Citrus Sinensis ID: 041121
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 574 | 2.2.26 [Sep-21-2011] | |||||||
| Q9C9H7 | 847 | Receptor-like protein 12 | no | no | 0.890 | 0.603 | 0.305 | 4e-44 | |
| O82318 | 960 | Probably inactive leucine | no | no | 0.729 | 0.436 | 0.311 | 4e-38 | |
| Q9FIZ3 | 1252 | LRR receptor-like serine/ | no | no | 0.763 | 0.349 | 0.305 | 1e-37 | |
| Q9FL28 | 1173 | LRR receptor-like serine/ | no | no | 0.808 | 0.395 | 0.304 | 3e-37 | |
| Q8VZG8 | 1045 | Probable LRR receptor-lik | no | no | 0.780 | 0.428 | 0.293 | 3e-37 | |
| Q8GUQ5 | 1207 | Brassinosteroid LRR recep | N/A | no | 0.696 | 0.331 | 0.322 | 3e-37 | |
| Q9LP24 | 1120 | Probable leucine-rich rep | no | no | 0.853 | 0.437 | 0.312 | 4e-37 | |
| Q9LVP0 | 1102 | Probable leucine-rich rep | no | no | 0.848 | 0.441 | 0.302 | 1e-36 | |
| Q8L899 | 1207 | Systemin receptor SR160 O | N/A | no | 0.766 | 0.364 | 0.303 | 3e-36 | |
| O49318 | 1124 | Probable leucine-rich rep | no | no | 0.890 | 0.454 | 0.273 | 7e-36 |
| >sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2 | Back alignment and function desciption |
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Score = 179 bits (455), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 190/621 (30%), Positives = 281/621 (45%), Gaps = 110/621 (17%)
Query: 34 IGKLHSLKTLTSHSCYL-----RPLSNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLS 88
IG L L+ L+ S L L N+S N V + L+ NQL G +P S +++ L +S
Sbjct: 202 IGDLKQLRNLSLASNNLIGEIPSSLGNLS-NLVHLVLTHNQLVGEVPASIGNLIELRVMS 260
Query: 89 LMFNELEGGIPKFFGNMLNLS------DN-------KLAIIQNMS--------------- 120
N L G IP F N+ LS +N ++I N+
Sbjct: 261 FENNSLSGNIPISFANLTKLSIFVLSSNNFTSTFPFDMSIFHNLEYFDVSYNSFSGPFPK 320
Query: 121 SGCLKNSLESLHLEVNHFTGPIPDLGGFSSMK--RLYLSDNLLNGTINKSIGQIFKLEIT 178
S L SLES++L+ N FTGPI SS K L L N L+G I +SI ++ LE
Sbjct: 321 SLLLIPSLESIYLQENQFTGPIEFANTSSSTKLQDLILGRNRLHGPIPESISRLLNLEEL 380
Query: 179 CLSQNSLT----------------DLANIQIKGKLPDLSSRFGTSN-------------- 208
+S N+ T DL+ ++G++P R T
Sbjct: 381 DISHNNFTGAIPPTISKLVNLLHLDLSKNNLEGEVPACLWRLNTMVLSHNSFSSFENTSQ 440
Query: 209 -----PGIDISSNHFEGPIPPLP---SNSSFLNLSKNRFSRSISLC--SISGSKLTYIDL 258
+D++SN F+GPIP + S+ FL+LS N FS SI C + SGS + ++L
Sbjct: 441 EEALIEELDLNSNSFQGPIPYMICKLSSLGFLDLSNNLFSGSIPSCIRNFSGS-IKELNL 499
Query: 259 SSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIV 318
N SG LPD + LV LD+ +N G+ P S+ + + + N+
Sbjct: 500 GDNNFSGTLPDIFSKATELVSLDVSHNQLEGKFPKSL--INCKALELVNVESNK------ 551
Query: 319 WELLTTQTFESWEE-----RFVRLKSNKFHGKTPFQLCQFAF--LQVLDLSLNNISGKIP 371
F SW E + L+SNKF+G + F L+++D+S NN SG +P
Sbjct: 552 ----IKDIFPSWLESLPSLHVLNLRSNKFYGPLYHRHASIGFQSLRIIDISHNNFSGTLP 607
Query: 372 KC-FNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDK-VMPTWKGSGREYRSTLGL 429
F+N+ MT ++ + Y H +K V +++ R++R+
Sbjct: 608 PYYFSNWKDMTTLTEEMDQYMTEFWRYADS-YYHEMEMVNKGVDMSFERIRRDFRA---- 662
Query: 430 IKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLV 489
++ S NK+NG +PE + L L LNLS N T + L L+ LD+SRN+L
Sbjct: 663 ---IDFSGNKINGNIPESLGYLKELRVLNLSGNAFTSVIPRFLANLTKLETLDISRNKLS 719
Query: 490 GGIPSSLSPLSVLSVMDLSYNNLSGKIPTGTQLQSFNGSVYAGNPELCGLPLPNKCRDEE 549
G IP L+ LS LS M+ S+N L G +P GTQ Q S + NP L G L + CRD
Sbjct: 720 GQIPQDLAALSFLSYMNFSHNLLQGPVPRGTQFQRQKCSSFLDNPGLYG--LEDICRD-T 776
Query: 550 SAPGPGMTEGRDDADTSEDDM 570
A P ++ +D +E++M
Sbjct: 777 GALNP-TSQLPEDLSEAEENM 796
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Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance. Arabidopsis thaliana (taxid: 3702) |
| >sp|O82318|Y2579_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 159 bits (403), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 165/530 (31%), Positives = 238/530 (44%), Gaps = 111/530 (20%)
Query: 13 SLRYLNLEENNLANCSDWFQVIGKLHSLKTLT-SHSCYLRPLSN---ISSNFVSIDLSFN 68
SLRYLNL NN + G L +L TL S++ + + N + SN +DL N
Sbjct: 124 SLRYLNLSNNNFSGSIPR----GFLPNLYTLDLSNNMFTGEIYNDIGVFSNLRVLDLGGN 179
Query: 69 QLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSL 128
L G +P ++ LE L+L N+L GG+P G M NL
Sbjct: 180 VLTGHVPGYLGNLSRLEFLTLASNQLTGGVPVELGKMKNL-------------------- 219
Query: 129 ESLHLEVNHFTGPIP-DLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLT- 186
+ ++L N+ +G IP +GG SS+ L L N L+G I S+G + KLE L QN L+
Sbjct: 220 KWIYLGYNNLSGEIPYQIGGLSSLNHLDLVYNNLSGPIPPSLGDLKKLEYMFLYQNKLSG 279
Query: 187 ---------------DLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPP----LPS 227
D ++ + G++P+L ++ S + + SN+ G IP LP
Sbjct: 280 QIPPSIFSLQNLISLDFSDNSLSGEIPELVAQM-QSLEILHLFSNNLTGKIPEGVTSLP- 337
Query: 228 NSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSF 287
L L NRFS I + LT +DLS+N L+GKLPD L L L +NS
Sbjct: 338 RLKVLQLWSNRFSGGIPANLGKHNNLTVLDLSTNNLTGKLPDTLCDSGHLTKLILFSNSL 397
Query: 288 SGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTP 347
+IP S+G Q+++ VRL++N F GK P
Sbjct: 398 DSQIPPSLGMCQSLER-------------------------------VRLQNNGFSGKLP 426
Query: 348 FQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYS 407
+ + LDLS NN+ G I N M Q D ++ ++
Sbjct: 427 RGFTKLQLVNFLDLSNNNLQGNI-----NTWDMPQLEMLDLSVNKFFGE----------- 470
Query: 408 FQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQ 467
+P + S R +K L+LS NK++G VP+ +M ++ L+LS N +TG
Sbjct: 471 -----LPDFSRSKR--------LKKLDLSRNKISGVVPQGLMTFPEIMDLDLSENEITGV 517
Query: 468 NSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIP 517
++ K+L LDLS N G IPSS + VLS +DLS N LSG+IP
Sbjct: 518 IPRELSSCKNLVNLDLSHNNFTGEIPSSFAEFQVLSDLDLSCNQLSGEIP 567
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2 | Back alignment and function description |
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Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 154/504 (30%), Positives = 223/504 (44%), Gaps = 66/504 (13%)
Query: 58 SNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSD-----NK 112
+N L N L+G +P + LE + L N G +P GN L + N+
Sbjct: 409 TNLQEFTLYHNNLEGKVPKEIGFLGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNR 468
Query: 113 LAIIQNMSSGCLKNSLESLHLEVNHFTGPIP-DLGGFSSMKRLYLSDNLLNGTINKSIGQ 171
L+ S G LK+ L LHL N G IP LG M + L+DN L+G+I S G
Sbjct: 469 LSGEIPSSIGRLKD-LTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGF 527
Query: 172 IFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSN-PGIDISSNHFEGPIPPLPSNSS 230
+ LE+ + NSL +G LPD S N I+ SSN F G I PL +SS
Sbjct: 528 LTALELFMIYNNSL--------QGNLPD--SLINLKNLTRINFSSNKFNGSISPLCGSSS 577
Query: 231 FL--NLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFS 288
+L ++++N F I L + L + L N +G++P + L +LD+ NS S
Sbjct: 578 YLSFDVTENGFEGDIPLELGKSTNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLS 637
Query: 289 GRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERF-----VRLKSNKFH 343
G IP +G + + T N + + +W + ++L SNKF
Sbjct: 638 GIIPVELGLCK----KLTHIDLNNNYL--------SGVIPTWLGKLPLLGELKLSSNKFV 685
Query: 344 GKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYV 403
G P ++ + L L N+++G IP+ N A+ + + GP
Sbjct: 686 GSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQALN-------ALNLEENQLSGP--- 735
Query: 404 HHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGL-VALNLSRN 462
+P+ G L + L LS N L G +P EI L L AL+LS N
Sbjct: 736 ---------LPSTIGK-------LSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLSYN 779
Query: 463 HLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTGTQL 522
+ TG+ I L L+ LDLS NQLVG +P + + L ++LSYNNL GK+ Q
Sbjct: 780 NFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKLK--KQF 837
Query: 523 QSFNGSVYAGNPELCGLPLPNKCR 546
+ + GN LCG PL + R
Sbjct: 838 SRWQADAFVGNAGLCGSPLSHCNR 861
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Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1 | Back alignment and function description |
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Score = 157 bits (396), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 168/552 (30%), Positives = 248/552 (44%), Gaps = 88/552 (15%)
Query: 10 RLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSC-----YLRPLSNISSNFVSID 64
RL L +L L EN+L + IG L SL+ LT HS + + ++N+ N +
Sbjct: 310 RLTQLTHLGLSENHLV--GPISEEIGFLESLEVLTLHSNNFTGEFPQSITNLR-NLTVLT 366
Query: 65 LSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGN-----MLNLSDNKLAIIQNM 119
+ FN + G +P + L +LS N L G IP N +L+LS N++ +
Sbjct: 367 VGFNNISGELPADLGLLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMT--GEI 424
Query: 120 SSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEIT 178
G + +L + + NHFTG IPD + S+++ L ++DN L GT+ IG++ KL I
Sbjct: 425 PRGFGRMNLTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKLQKLRIL 484
Query: 179 CLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLN---LS 235
+S NSLT +I G L DL+ + + SN F G IP SN + L +
Sbjct: 485 QVSYNSLTGPIPREI-GNLKDLNILY--------LHSNGFTGRIPREMSNLTLLQGLRMY 535
Query: 236 KNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSM 295
N I L+ +DLS+N SG++P + +SL L L N F+G IP S+
Sbjct: 536 SNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIPASL 595
Query: 296 GFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAF 355
L + T N T I ELL + + ++ +N G P +L +
Sbjct: 596 KSLSLLNTFDISD--NLLTGTIPGELLASL---KNMQLYLNFSNNLLTGTIPKELGKLEM 650
Query: 356 LQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPT 415
+Q +DLS N SG IP RS V+
Sbjct: 651 VQEIDLSNNLFSGSIP------------RSLQACKNVF---------------------- 676
Query: 416 WKGSGREYRSTLGLIKSLELSSNKLNGAVPEEI---MDLVGLVALNLSRNHLTGQNSPKI 472
+L+ S N L+G +P+E+ MD++ ++LNLSRN +G+
Sbjct: 677 ----------------TLDFSQNNLSGHIPDEVFQGMDMI--ISLNLSRNSFSGEIPQSF 718
Query: 473 GQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTGTQLQSFNGSVYAG 532
G + L LDLS N L G IP SL+ LS L + L+ NNL G +P ++ N S G
Sbjct: 719 GNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLKLASNNLKGHVPESGVFKNINASDLMG 778
Query: 533 NPELCGLPLPNK 544
N +LCG P K
Sbjct: 779 NTDLCGSKKPLK 790
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Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 157 bits (396), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 148/504 (29%), Positives = 228/504 (45%), Gaps = 56/504 (11%)
Query: 58 SNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQ 117
+ V++ L N L GSIP ++ L L L N L G IP FGN+ N++ L + +
Sbjct: 214 TKLVNLYLFINSLSGSIPSEIGNLPNLRELCLDRNNLTGKIPSSFGNLKNVT--LLNMFE 271
Query: 118 NMSSGCLK------NSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNLLNGTINKSIG 170
N SG + +L++L L N TGPIP LG ++ L+L N LNG+I +G
Sbjct: 272 NQLSGEIPPEIGNMTALDTLSLHTNKLTGPIPSTLGNIKTLAVLHLYLNQLNGSIPPELG 331
Query: 171 QIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFG--TSNPGIDISSNHFEGPIPPLPSN 228
++ + +S+N LT G +PD FG T+ + + N GPIPP +N
Sbjct: 332 EMESMIDLEISENKLT--------GPVPD---SFGKLTALEWLFLRDNQLSGPIPPGIAN 380
Query: 229 SS---FLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNN 285
S+ L L N F+ + G KL + L N G +P SL+ + N
Sbjct: 381 STELTVLQLDTNNFTGFLPDTICRGGKLENLTLDDNHFEGPVPKSLRDCKSLIRVRFKGN 440
Query: 286 SFSGRIPDSMGFLQNIQ-TQFTQQQFNRRTVFIVWELLTTQTFESWEE--RFVR--LKSN 340
SFSG I ++ G + + F+ Q +WE+ + V L +N
Sbjct: 441 SFSGDISEAFGVYPTLNFIDLSNNNFH------------GQLSANWEQSQKLVAFILSNN 488
Query: 341 KFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQER------SSDPTIKVYY 394
G P ++ L LDLS N I+G++P+ +N +++ + S +
Sbjct: 489 SITGAIPPEIWNMTQLSQLDLSSNRITGELPESISNINRISKLQLNGNRLSGKIPSGIRL 548
Query: 395 YTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGL 454
T + + F ++ PT R Y + LS N L+ +PE + L L
Sbjct: 549 LTNLEYLDLSSNRFSSEIPPTLNNLPRLYY--------MNLSRNDLDQTIPEGLTKLSQL 600
Query: 455 VALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSG 514
L+LS N L G+ S + L++L+ LDLS N L G IP S + L+ +D+S+NNL G
Sbjct: 601 QMLDLSYNQLDGEISSQFRSLQNLERLDLSHNNLSGQIPPSFKDMLALTHVDVSHNNLQG 660
Query: 515 KIPTGTQLQSFNGSVYAGNPELCG 538
IP ++ + GN +LCG
Sbjct: 661 PIPDNAAFRNAPPDAFEGNKDLCG 684
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q8GUQ5|BRI1_SOLLC Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 157 bits (396), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 163/506 (32%), Positives = 236/506 (46%), Gaps = 106/506 (20%)
Query: 63 IDLSFNQLQGSIP-DSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNL-----SDNKLAII 116
+D+S+N G +P D+ + ++ + L FN+ GG+P F N+L L S N L +
Sbjct: 357 VDISYNNFSGKLPVDTLSKLSNIKTMVLSFNKFVGGLPDSFSNLLKLETLDMSSNNLTGV 416
Query: 117 QNMSSGCLK---NSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNLLNGTINKSIGQI 172
+ SG K N+L+ L+L+ N F GPIPD L S + L LS N L G+I S+G +
Sbjct: 417 --IPSGICKDPMNNLKVLYLQNNLFKGPIPDSLSNCSQLVSLDLSFNYLTGSIPSSLGSL 474
Query: 173 FKLEITCLSQNSLTDLANIQIKGKLP-DLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSF 231
KL+ L N Q+ G++P +L N +D N GPIP
Sbjct: 475 SKLKDLILWLN--------QLSGEIPQELMYLQALENLILDF--NDLTGPIPA------- 517
Query: 232 LNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRI 291
S+S C+ KL +I LS+N LSG++P +L IL LGNNS SG I
Sbjct: 518 ----------SLSNCT----KLNWISLSNNQLSGEIPASLGRLSNLAILKLGNNSISGNI 563
Query: 292 PDSMGFLQ-----NIQTQFTQQQFN----RRTVFIVWELLTTQTFESWEERFVRLK---S 339
P +G Q ++ T F +++ I LLT + R+V +K S
Sbjct: 564 PAELGNCQSLIWLDLNTNFLNGSIPPPLFKQSGNIAVALLTGK-------RYVYIKNDGS 616
Query: 340 NKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVG 399
+ HG L +F ++ L+ IS + P C NFT + Y
Sbjct: 617 KECHGAG--NLLEFGGIR--QEQLDRISTRHP-C--NFTRV-------------YRGITQ 656
Query: 400 PPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNL 459
P + H+ G + L+LS NKL G++P+E+ + L LNL
Sbjct: 657 PTFNHN----------------------GSMIFLDLSYNKLEGSIPKELGAMYYLSILNL 694
Query: 460 SRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTG 519
N L+G ++G LK++ LDLS N+ G IP+SL+ L++L +DLS NNLSG IP
Sbjct: 695 GHNDLSGMIPQQLGGLKNVAILDLSYNRFNGTIPNSLTSLTLLGEIDLSNNNLSGMIPES 754
Query: 520 TQLQSFNGSVYAGNPELCGLPLPNKC 545
+F +A N LCG PLP C
Sbjct: 755 APFDTFPDYRFANN-SLCGYPLPIPC 779
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Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. May be involved in a feedback regulation of brassinosteroid biosynthesis. May be also involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants. Solanum lycopersicum (taxid: 4081) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 156 bits (394), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 177/566 (31%), Positives = 253/566 (44%), Gaps = 76/566 (13%)
Query: 11 LHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLR-----PLSNISSNFVSIDL 65
+ S+ L L +N L +G L +L L + YL + N+ S ++ L
Sbjct: 221 MESMTDLALSQNKLTGSIP--STLGNLKNLMVLYLYENYLTGVIPPEIGNMES-MTNLAL 277
Query: 66 SFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNM-----LNLSDNKLAIIQNMS 120
S N+L GSIP S ++ L LSL N L GGIP GN+ L LS+NKL S
Sbjct: 278 SQNKLTGSIPSSLGNLKNLTLLSLFQNYLTGGIPPKLGNIESMIDLELSNNKLTGSIPSS 337
Query: 121 SGCLKNSLESLHLEVNHFTGPIP-DLGGFSSMKRLYLSDNLLNGTINKSIGQ-------- 171
G LKN L L+L N+ TG IP +LG SM L L++N L G+I S G
Sbjct: 338 LGNLKN-LTILYLYENYLTGVIPPELGNMESMIDLQLNNNKLTGSIPSSFGNLKNLTYLY 396
Query: 172 --------IFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIP 223
+ E+ + DL+ ++ G +PD F T + + NH G IP
Sbjct: 397 LYLNYLTGVIPQELGNMESMINLDLSQNKLTGSVPDSFGNF-TKLESLYLRVNHLSGAIP 455
Query: 224 PLPSNSSFLN---LSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVIL 280
P +NSS L L N F+ G KL I L N L G +P SL+
Sbjct: 456 PGVANSSHLTTLILDTNNFTGFFPETVCKGRKLQNISLDYNHLEGPIPKSLRDCKSLIRA 515
Query: 281 DLGNNSFSGRIPDSMGFLQNIQ-TQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKS 339
N F+G I ++ G ++ F+ +F+ + WE +S + + + +
Sbjct: 516 RFLGNKFTGDIFEAFGIYPDLNFIDFSHNKFHGE-ISSNWE-------KSPKLGALIMSN 567
Query: 340 NKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVG 399
N G P ++ L LDLS NN+ G++P+ N T +++ R + +
Sbjct: 568 NNITGAIPTEIWNMTQLVELDLSTNNLFGELPEAIGNLTNLSRLRLNGNQL--------- 618
Query: 400 PPYVHHYSFQDKVMPTWKGSGR--EYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVAL 457
SGR S L ++SL+LSSN + +P+ + L +
Sbjct: 619 -------------------SGRVPAGLSFLTNLESLDLSSNNFSSEIPQTFDSFLKLHDM 659
Query: 458 NLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIP 517
NLSRN G P++ +L L LDLS NQL G IPS LS L L +DLS+NNLSG IP
Sbjct: 660 NLSRNKFDGS-IPRLSKLTQLTQLDLSHNQLDGEIPSQLSSLQSLDKLDLSHNNLSGLIP 718
Query: 518 TGTQLQSFNGSVYAGNPELCGLPLPN 543
T + +V N +L G PLP+
Sbjct: 719 TTFEGMIALTNVDISNNKLEG-PLPD 743
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 154 bits (390), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 174/576 (30%), Positives = 262/576 (45%), Gaps = 89/576 (15%)
Query: 34 IGKLHSLKTLTSHSCYL-----RPLSNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLS 88
IG L SL L ++S + R + N+ S N + GS+P L L
Sbjct: 165 IGNLLSLSQLVTYSNNISGQLPRSIGNLK-RLTSFRAGQNMISGSLPSEIGGCESLVMLG 223
Query: 89 LMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLK------NSLESLHLEVNHFTGPI 142
L N+L G +PK G + LS ++ + +N SG + SLE+L L N GPI
Sbjct: 224 LAQNQLSGELPKEIGMLKKLS--QVILWENEFSGFIPREISNCTSLETLALYKNQLVGPI 281
Query: 143 P-DLGGFSSMKRLYLSDNLLNGTINKSIGQI-FKLEITCLSQNSLT-----DLANI---- 191
P +LG S++ LYL N LNGTI + IG + + +EI S+N+LT +L NI
Sbjct: 282 PKELGDLQSLEFLYLYRNGLNGTIPREIGNLSYAIEID-FSENALTGEIPLELGNIEGLE 340
Query: 192 -------QIKGKLP-DLSSRFGTSNPGIDISSNHFEGPIP---PLPSNSSFLNLSKNRFS 240
Q+ G +P +LS+ S +D+S N GPIP L L +N S
Sbjct: 341 LLYLFENQLTGTIPVELSTLKNLSK--LDLSINALTGPIPLGFQYLRGLFMLQLFQNSLS 398
Query: 241 RSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQN 300
+I S L +D+S N LSG++P + +++IL+LG N+ SG IP + +
Sbjct: 399 GTIPPKLGWYSDLWVLDMSDNHLSGRIPSYLCLHSNMIILNLGTNNLSGNIPTGITTCKT 458
Query: 301 -IQTQFTQQQFNRRTVFIVWELLTTQTFESWEERF----------------VRLKSNKFH 343
+Q + + R + + + E + RF ++L N F
Sbjct: 459 LVQLRLARNNLVGRFPSNLCKQVNVTAIELGQNRFRGSIPREVGNCSALQRLQLADNGFT 518
Query: 344 GKTPFQLCQFAFLQVLDLSLNNISGKIPK-------------CFNNFTAMTQERSSDPTI 390
G+ P ++ + L L++S N ++G++P C NNF+
Sbjct: 519 GELPREIGMLSQLGTLNISSNKLTGEVPSEIFNCKMLQRLDMCCNNFSGTLPSE------ 572
Query: 391 KVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMD 450
VG Y G+ L + L++ N NG++P E+
Sbjct: 573 -------VGSLY--QLELLKLSNNNLSGTIPVALGNLSRLTELQMGGNLFNGSIPRELGS 623
Query: 451 LVGL-VALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSY 509
L GL +ALNLS N LTG+ P++ L L+FL L+ N L G IPSS + LS L + SY
Sbjct: 624 LTGLQIALNLSYNKLTGEIPPELSNLVMLEFLLLNNNNLSGEIPSSFANLSSLLGYNFSY 683
Query: 510 NNLSGKIPTGTQLQSFNGSVYAGNPELCGLPLPNKC 545
N+L+G IP L++ + S + GN LCG PL N+C
Sbjct: 684 NSLTGPIPL---LRNISMSSFIGNEGLCGPPL-NQC 715
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q8L899|BRI1_SOLPE Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1 | Back alignment and function description |
|---|
Score = 153 bits (387), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 179/589 (30%), Positives = 257/589 (43%), Gaps = 149/589 (25%)
Query: 14 LRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLR----------PLSNISSNFVSI 63
L +LNL N Q +G + L + + YLR L+++ V +
Sbjct: 283 LSFLNLTNN---------QFVGLVPKLPSESLQYLYLRGNDFQGVYPNQLADLCKTVVEL 333
Query: 64 DLSFNQLQGSIPDSSQHMVYLE-------------------------HLSLMFNELEGGI 98
DLS+N G +P+S LE + L FN+ GG+
Sbjct: 334 DLSYNNFSGMVPESLGECSSLELVDISNNNFSGKLPVDTLLKLSNIKTMVLSFNKFVGGL 393
Query: 99 PKFFGNM-----LNLSDNKLAIIQNMSSGCLK---NSLESLHLEVNHFTGPIPD-LGGFS 149
P F N+ L++S N L I + SG K N+L+ L+L+ N F GPIPD L S
Sbjct: 394 PDSFSNLPKLETLDMSSNNLTGI--IPSGICKDPMNNLKVLYLQNNLFKGPIPDSLSNCS 451
Query: 150 SMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLP-DLSSRFGTSN 208
+ L LS N L G+I S+G + KL+ L N Q+ G++P +L N
Sbjct: 452 QLVSLDLSFNYLTGSIPSSLGSLSKLKDLILWLN--------QLSGEIPQELMYLQALEN 503
Query: 209 PGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLP 268
+D N GPIP S+S C+ KL +I LS+N LSG++P
Sbjct: 504 LILDF--NDLTGPIPA-----------------SLSNCT----KLNWISLSNNQLSGEIP 540
Query: 269 DCWWMFDSLVILDLGNNSFSGRIPDSMGFLQ-----NIQTQFTQQQFN----RRTVFIVW 319
+L IL LGNNS SG IP +G Q ++ T F +++ I
Sbjct: 541 ASLGRLSNLAILKLGNNSISGNIPAELGNCQSLIWLDLNTNFLNGSIPPPLFKQSGNIAV 600
Query: 320 ELLTTQTFESWEERFVRLK---SNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNN 376
LLT + R+V +K S + HG L +F ++ L+ IS + P C N
Sbjct: 601 ALLTGK-------RYVYIKNDGSKECHGAG--NLLEFGGIR--QEQLDRISTRHP-C--N 646
Query: 377 FTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELS 436
FT + Y P + H+ G + L+LS
Sbjct: 647 FTRV-------------YRGITQPTFNHN----------------------GSMIFLDLS 671
Query: 437 SNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSL 496
NKL G++P+E+ + L LNL N L+G ++G LK++ LDLS N+ G IP+SL
Sbjct: 672 YNKLEGSIPKELGAMYYLSILNLGHNDLSGMIPQQLGGLKNVAILDLSYNRFNGTIPNSL 731
Query: 497 SPLSVLSVMDLSYNNLSGKIPTGTQLQSFNGSVYAGNPELCGLPLPNKC 545
+ L++L +DLS NNLSG IP +F +A N LCG PLP C
Sbjct: 732 TSLTLLGEIDLSNNNLSGMIPESAPFDTFPDYRFANN-SLCGYPLPLPC 779
|
Receptor with a serine/threonine-protein kinase activity. Involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants. May also regulate, in response to brassinosteroid binding, a signaling cascade involved in plant development. Solanum peruvianum (taxid: 4082) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 152 bits (384), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 161/588 (27%), Positives = 271/588 (46%), Gaps = 77/588 (13%)
Query: 10 RLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYL-----RPLSNISSNFVSID 64
+L LR N+ N L+ + IG L++L+ L +++ L R L N++ +
Sbjct: 155 KLSQLRSFNICNNKLS--GPLPEEIGDLYNLEELVAYTNNLTGPLPRSLGNLNK-LTTFR 211
Query: 65 LSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCL 124
N G+IP + L+ L L N + G +PK G ++ L + + + QN SG +
Sbjct: 212 AGQNDFSGNIPTEIGKCLNLKLLGLAQNFISGELPKEIGMLVKLQE--VILWQNKFSGFI 269
Query: 125 K------NSLESLHLEVNHFTGPIP-DLGGFSSMKRLYLSDNLLNGTINKSIGQIFKL-- 175
SLE+L L N GPIP ++G S+K+LYL N LNGTI K +G++ K+
Sbjct: 270 PKDIGNLTSLETLALYGNSLVGPIPSEIGNMKSLKKLYLYQNQLNGTIPKELGKLSKVME 329
Query: 176 --------------EITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGP 221
E++ +S+ L L ++ G +P+ S+ + +D+S N GP
Sbjct: 330 IDFSENLLSGEIPVELSKISELRLLYLFQNKLTGIIPNELSKL-RNLAKLDLSINSLTGP 388
Query: 222 IPPLPSNSSFLNLSKNR----FSRSISLCSISG----SKLTYIDLSSNLLSGKLPDCWWM 273
IPP F NL+ R F S+S G S L +D S N LSGK+P
Sbjct: 389 IPP-----GFQNLTSMRQLQLFHNSLSGVIPQGLGLYSPLWVVDFSENQLSGKIPPFICQ 443
Query: 274 FDSLVILDLGNNSFSGRIPDSMGFLQNI-QTQFTQQQFNRRTVFIVWELLTTQTFESWEE 332
+L++L+LG+N G IP + +++ Q + + + + +L+ E +
Sbjct: 444 QSNLILLNLGSNRIFGNIPPGVLRCKSLLQLRVVGNRLTGQFPTELCKLVNLSAIELDQN 503
Query: 333 RF----------------VRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNN 376
RF + L +N+F P ++ + + L ++S N+++G IP N
Sbjct: 504 RFSGPLPPEIGTCQKLQRLHLAANQFSSNLPNEISKLSNLVTFNVSSNSLTGPIPSEIAN 563
Query: 377 FTAMTQERSSDPTIKVYYYTFVG--PPYV---HHYSFQDKVMPTWKGSGREYRSTLGLIK 431
+ + + + +F+G PP + H + G+ L +
Sbjct: 564 CKMLQR-------LDLSRNSFIGSLPPELGSLHQLEILRLSENRFSGNIPFTIGNLTHLT 616
Query: 432 SLELSSNKLNGAVPEEIMDLVGL-VALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVG 490
L++ N +G++P ++ L L +A+NLS N +G+ P+IG L L +L L+ N L G
Sbjct: 617 ELQMGGNLFSGSIPPQLGLLSSLQIAMNLSYNDFSGEIPPEIGNLHLLMYLSLNNNHLSG 676
Query: 491 GIPSSLSPLSVLSVMDLSYNNLSGKIPTGTQLQSFNGSVYAGNPELCG 538
IP++ LS L + SYNNL+G++P Q+ + + GN LCG
Sbjct: 677 EIPTTFENLSSLLGCNFSYNNLTGQLPHTQIFQNMTLTSFLGNKGLCG 724
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 574 | ||||||
| 147855809 | 1107 | hypothetical protein VITISV_029207 [Viti | 0.874 | 0.453 | 0.417 | 1e-95 | |
| 225464712 | 1021 | PREDICTED: receptor-like protein 12-like | 0.972 | 0.546 | 0.348 | 7e-91 | |
| 296084223 | 651 | unnamed protein product [Vitis vinifera] | 0.846 | 0.746 | 0.429 | 5e-88 | |
| 359490572 | 975 | PREDICTED: probable LRR receptor-like se | 0.949 | 0.558 | 0.344 | 2e-87 | |
| 147795695 | 1680 | hypothetical protein VITISV_022720 [Viti | 0.813 | 0.277 | 0.421 | 4e-87 | |
| 302143722 | 750 | unnamed protein product [Vitis vinifera] | 0.832 | 0.637 | 0.416 | 2e-86 | |
| 225466147 | 1024 | PREDICTED: LRR receptor-like serine/thre | 0.878 | 0.492 | 0.380 | 1e-85 | |
| 359489995 | 867 | PREDICTED: probable LRR receptor-like se | 0.851 | 0.564 | 0.411 | 2e-85 | |
| 302143729 | 641 | unnamed protein product [Vitis vinifera] | 0.935 | 0.837 | 0.393 | 2e-85 | |
| 297737340 | 505 | unnamed protein product [Vitis vinifera] | 0.644 | 0.732 | 0.469 | 7e-85 |
| >gi|147855809|emb|CAN79130.1| hypothetical protein VITISV_029207 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 357 bits (915), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 249/596 (41%), Positives = 330/596 (55%), Gaps = 94/596 (15%)
Query: 63 IDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSG 122
+ LS NQLQG IP S ++ L+ + L N L G +P+ N + L++ N G
Sbjct: 459 LSLSXNQLQGEIPKSFSNLCNLQEVELDSNNLTGQLPQDLLACANGTLRTLSLSDNRFRG 518
Query: 123 CLKN-----SLESLHLEVNHFTGPIP------------DLGG--------------FSSM 151
+ + LE L+L+ N G +P D+G S++
Sbjct: 519 LVPHLIGFSFLERLYLDYNQLNGTLPESIGQLAKLTWFDIGSNSLQGVISEAHFFNLSNL 578
Query: 152 KRLYLSDNLLNGTINKSI-----GQIFKLEITCL-----------SQNSLTDL------- 188
RL LS N L T N S+ Q+ L++ +Q LT+L
Sbjct: 579 YRLDLSYNSL--TFNMSLEWVPPSQLGSLQLASCKLGPRFPSWLQTQKHLTELDLSNSDI 636
Query: 189 --------------------ANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSN 228
+N QI+G LP+LSS+FGT P IDISSN FEG IP LPS
Sbjct: 637 SDVLPDWFWNLTSNINTLNISNNQIRGVLPNLSSQFGTY-PDIDISSNSFEGSIPQLPST 695
Query: 229 SSFLNLSKNRFSRSISL-CSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSF 287
+ L+LS N+ S SISL C ++ S L Y+DLS+N L+G LP+CW + SLV+L+L NN F
Sbjct: 696 VTRLDLSNNKLSGSISLLCIVANSYLVYLDLSNNSLTGALPNCWPQWASLVVLNLENNKF 755
Query: 288 SGRIPDSMGFLQNIQT-QFTQQQFNRRTVFIVWELLT-TQTFESW------EERFVRLKS 339
SG+IP+S+G LQ IQT F QQQFN R FI EL + W + L+S
Sbjct: 756 SGKIPNSLGSLQLIQTLHFAQQQFNWRIAFIFEELYKLSGKIPLWIGGSLPNLTILSLRS 815
Query: 340 NKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVG 399
N+ G +LCQ +Q+LDLS N+ISG IP+C NNFTAMT++ S + + Y+F
Sbjct: 816 NRXSGSICSELCQLKKIQILDLSSNDISGVIPRCLNNFTAMTKKGS---LVVAHNYSFGS 872
Query: 400 PPY-----VHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGL 454
Y + S+ D+ + WKGS EY++TLGLI+S++LS N L G +P+EI DL+ L
Sbjct: 873 FAYKDPLKFKNESYVDEALIKWKGSEFEYKNTLGLIRSIDLSRNNLLGEIPKEITDLLEL 932
Query: 455 VALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSG 514
V+LNLSRN+LTG IGQLKSL+ LDLS+N+L G IP+SLS +S+LSV+DLS NNLSG
Sbjct: 933 VSLNLSRNNLTGLIPTTIGQLKSLEILDLSQNELFGEIPTSLSEISLLSVLDLSNNNLSG 992
Query: 515 KIPTGTQLQSFNGSVYAGNPELCGLPLPNKCRDEESAPGPGMTEGRDDADTSEDDM 570
KIP GTQLQSFN Y GNP LCGLPL KC ++E D +DM
Sbjct: 993 KIPKGTQLQSFNSYSYKGNPTLCGLPLLKKCPEDEMKQDSPTRSIEDKIQQDGNDM 1048
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225464712|ref|XP_002276171.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 341 bits (874), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 270/774 (34%), Positives = 359/774 (46%), Gaps = 216/774 (27%)
Query: 10 RLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRP----------------- 52
RL SLR+L+L NL W VI +L SL L H L
Sbjct: 204 RLSSLRHLDLSGLNLDKAIYWEHVINRLPSLTDLLLHDSALPQIITPSALSYTNSSKSLV 263
Query: 53 ----------------LSNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEG 96
L N+SS+ V +DLS NQ+QG IPD+ MV LE+L L FN+LEG
Sbjct: 264 VLDLSWNFLSSSVYPWLFNLSSSLVHLDLSINQIQGLIPDTFGEMVSLEYLDLFFNQLEG 323
Query: 97 GIPK-----------------------FFGNM-----LNLSDNKL--------------- 113
IP+ FG+M L+LS N+L
Sbjct: 324 EIPQSLTSTSLVHLDLSVNHLHGSIPDTFGHMTSLSYLDLSLNQLEGGIPKSFKNLCSLQ 383
Query: 114 --------------AIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDN 159
+QN S C K++LE L L N FTG P+ GFS + LY+ N
Sbjct: 384 MVMLLSNSLTAQLPEFVQN-SLSCSKDTLEVLVLSWNQFTGSFPNFTGFSVLGHLYIDHN 442
Query: 160 LLNGTINKSIGQIFKLEITCLSQNSL-----------------TDLANIQIK-------- 194
LNGT + IGQ+ +LE+ +S NSL DL++ +
Sbjct: 443 RLNGTFPEHIGQLSQLEVLEISGNSLHGNITEAHLSSLSKLYWLDLSSNSLALELSPEWT 502
Query: 195 -----GKLPDLSSRFGTSNPG-----------------------------------IDIS 214
G L LS + G + PG + I+
Sbjct: 503 PPFQVGYLGLLSCKMGPNFPGWLQTQKDLFSLDISNSSISDVIPSWFWNLTSKLIKLRIA 562
Query: 215 SNHFEGPIPPLP-SNSSFLNLSKNR---------------------FSRSIS-LCSISGS 251
+N G +P L ++ ++LS NR FS SIS LC+I
Sbjct: 563 NNQIRGRVPSLRMETAAVIDLSLNRFEGPIPSLPSGVRVLSLSKNLFSGSISLLCTIVDG 622
Query: 252 KLTYIDLSSNLLSGKLPDCWWMF-DSLVILDLGNNSFSGRIPDSMGFLQNIQT-QFTQQQ 309
L+Y+DLS NLLSG LPDCW + D L IL+L NN+FSG++P S+G L +QT
Sbjct: 623 ALSYLDLSDNLLSGALPDCWQQWRDQLQILNLANNNFSGKLPYSLGSLAALQTLHLYNNG 682
Query: 310 FNRRTVFIVWELLTTQTFESWEERF-----------------VRLKSNKFHGKTPFQLCQ 352
F + + + + RF + L+SN+FHG +C
Sbjct: 683 FLGELPSSLMNCTKLRLVDMGKNRFSGEIPTWIGERLSDLVVLSLRSNEFHGSISSDICL 742
Query: 353 FAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGP---------PYV 403
LQ+LD S NNISG IP+C NNFTAM Q+ Y + P P
Sbjct: 743 LKELQILDFSRNNISGTIPRCLNNFTAMAQKMIYSVIAHDYLALSIVPRGRNNLGITPRW 802
Query: 404 HHYS--------FQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLV 455
+ S + D + WKG EY++ LGL++S++LSSNKL+G +P+EI L+ L+
Sbjct: 803 AYSSGSFDTIARYVDSALIPWKGGEFEYKNILGLVRSIDLSSNKLSGEIPKEITKLMELI 862
Query: 456 ALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGK 515
+LNLSRNHL GQ IGQLKSLD LDLS+NQL G IPSSLS + LSV+DLS NNLSG+
Sbjct: 863 SLNLSRNHLNGQIPSMIGQLKSLDVLDLSKNQLDGKIPSSLSQIDRLSVLDLSSNNLSGQ 922
Query: 516 IPTGTQLQSFNGSVYAGNPELCGLPLPNKCRDEESAPGPGMTEGRDDADTSEDD 569
IP+GTQLQ F S Y GNPELCG PL KC+++E+A ++G +D D +D+
Sbjct: 923 IPSGTQLQGFEASSYMGNPELCGSPLKTKCQEDETAQTSPTSDGNED-DLQDDE 975
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296084223|emb|CBI24611.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 332 bits (850), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 234/545 (42%), Positives = 314/545 (57%), Gaps = 59/545 (10%)
Query: 65 LSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPK-FFGNM-----LNLSDNKLAIIQN 118
L +NQL G++P+S + L + N L+G I + F N+ L+LS N L N
Sbjct: 82 LDYNQLNGTLPESIGQLAKLTWFDIGSNSLQGVISEAHFFNLSNLYRLDLSYNSLTF--N 139
Query: 119 MSSGCLKNS-LESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNLLNGTINKSIGQIFKLE 176
MS + S L SL L P L + L LS N I +
Sbjct: 140 MSLEWVPPSQLGSLQLASCKLGPRFPSWLQTQKHLTELDLS--------NSDISDVLPDW 191
Query: 177 ITCLSQNSLT-DLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLS 235
L+ N T +++N QI+G LP+LSS+FGT P IDISSN FEG IP LPS + L+LS
Sbjct: 192 FWNLTSNINTLNISNNQIRGVLPNLSSQFGTY-PDIDISSNSFEGSIPQLPSTVTRLDLS 250
Query: 236 KNRFSRSISL-CSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDS 294
N+ S SISL C ++ S L Y+DLS+N L+G LP+CW + SLV+L+L NN FSG+IP+S
Sbjct: 251 NNKLSGSISLLCIVANSYLVYLDLSNNSLTGALPNCWPQWASLVVLNLENNKFSGKIPNS 310
Query: 295 MGFLQNIQTQFTQQQFNRRTVFIVWELLTT-------QTFESWEERF------------- 334
+G LQ IQT + R+ + EL ++ + + + R
Sbjct: 311 LGSLQLIQT------LHLRSNNLTGELPSSLKNCTSLRLIDLGKNRLSGKIPLWIGGSLP 364
Query: 335 ----VRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTI 390
+ L+SN+F G +LCQ +Q+LDLS N+ISG IP+C NNFTAMT++ S +
Sbjct: 365 NLTILSLRSNRFSGSICSELCQLKKIQILDLSSNDISGVIPRCLNNFTAMTKKGS---LV 421
Query: 391 KVYYYTFVGPPY-----VHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVP 445
+ Y+F Y + S+ D+ + WKGS EY++TLGLI+S++LS N L G +P
Sbjct: 422 VAHNYSFGSFAYKDPLKFKNESYVDEALIKWKGSEFEYKNTLGLIRSIDLSRNNLLGEIP 481
Query: 446 EEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVM 505
+EI DL+ LV+LNLSRN+LTG IGQLKSL+ LDLS+N+L G IP+SLS +S+LSV+
Sbjct: 482 KEITDLLELVSLNLSRNNLTGLIPTTIGQLKSLEILDLSQNELFGEIPTSLSEISLLSVL 541
Query: 506 DLSYNNLSGKIPTGTQLQSFNGSVYAGNPELCGLPLPNKCRDEESAPGPGMTEGRDDADT 565
DLS NNLSGKIP GTQLQSFN Y GNP LCGLPL KC ++E D
Sbjct: 542 DLSNNNLSGKIPKGTQLQSFNSYSYKGNPTLCGLPLLKKCPEDEMKQDSPTRSIEDKIQQ 601
Query: 566 SEDDM 570
+DM
Sbjct: 602 DGNDM 606
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359490572|ref|XP_003634116.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 329 bits (844), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 258/748 (34%), Positives = 353/748 (47%), Gaps = 203/748 (27%)
Query: 10 RLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYL-RPLS-------------- 54
RL SL +L L NL+ W I KL SL L SC L P++
Sbjct: 186 RLSSLTHLGLNHLNLSKAIRWADAINKLPSLIDLLLKSCDLPSPITPSLSLVTSSMSLAV 245
Query: 55 -----------------NISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGG 97
N +S+ V +DLS+N LQ S PD+ +MV LE+L L +N+L+G
Sbjct: 246 LDLSCNQLSTSIYPWLFNFNSSLVHLDLSYNHLQASPPDAFGNMVSLEYLDLSWNQLKGE 305
Query: 98 IPK----------------------FFGNM-----LNLSDNKL----------------- 113
IPK FGNM +NL+ N+L
Sbjct: 306 IPKSFSSSLVFLDLSNNQLQGSIPDTFGNMTSLRTVNLTRNQLEGEIPKSFNNLCNLQIL 365
Query: 114 ---------AIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGT 164
+++N+ + C ++LE L L N F G +PDL GFSS+ RL+L N LNGT
Sbjct: 366 KLHRNNLAGVLVKNLLA-CANDTLEILDLSHNQFIGSLPDLIGFSSLTRLHLGHNQLNGT 424
Query: 165 INKSIGQIFKLEITCLSQNSL---TDLANIQIKGKLPDL--------------------- 200
+ +SI Q+ +LE+ + NSL A++ KL L
Sbjct: 425 LPESIAQLAQLELLKIPSNSLQGTVSEAHLFSLSKLQRLDLSFNSLLTLNLSSDWVPQFQ 484
Query: 201 -------SSRFGTSNPG----------IDISSNHFEGPIP----PLPSNSSFLNLSKNRF 239
S + G PG +DIS + IP SN + LN+S N+
Sbjct: 485 LTHIFLASCKLGPRFPGWLRTQKGVGWLDISGSGISDVIPNWFWNFTSNLNRLNISNNQI 544
Query: 240 SRSISLCSISGSKLTYIDLSS--------------------------------------- 260
+ + SI S+ +D+SS
Sbjct: 545 TGVVPNASIEFSRFPQMDMSSNYFEGSIPVFIFYAGWLDLSKNMFSGSISSLCAVSRGAS 604
Query: 261 -------NLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQT---------- 303
NLLSG+LP+CW ++ LV+L+L NN+FSG+I DS+G L+ I++
Sbjct: 605 AYLDLSNNLLSGELPNCWAQWEGLVVLNLENNNFSGKIQDSIGSLEAIESLHLRNNKLTG 664
Query: 304 --QFTQQQFNRRTVFIVWELLTTQTFESWEER------FVRLKSNKFHGKTPFQLCQFAF 355
+ + + V + SW R + L+ N+F+G P +CQ
Sbjct: 665 ELPLSLKNCTKLRVIDLGRNKLCGNIPSWIGRSLPNLVVLNLRFNEFYGSIPMDMCQLKK 724
Query: 356 LQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTF-VGPPYVHHYSFQDKVMP 414
+Q+LDLS NNISG IP+CFNNFTAM Q+ S + Y YT P S+ DK M
Sbjct: 725 IQILDLSNNNISGMIPRCFNNFTAMVQQGS---LVITYNYTIPCFKPLSRPSSYVDKQMV 781
Query: 415 TWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQ 474
WKG EY TLGL+KS++LSSN+L+G +P E+ +L+ L++LNLSRN LTG P IGQ
Sbjct: 782 QWKGRELEYEKTLGLLKSIDLSSNELSGEIPREVTNLLDLISLNLSRNFLTGLIPPTIGQ 841
Query: 475 LKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTGTQLQSFNGSVYAGNP 534
LK++D LDLS N+L G IPS+LS + LSV+DLS+N+ GKIP+GTQLQSFN S Y GNP
Sbjct: 842 LKAMDALDLSWNRLFGKIPSNLSQIDRLSVLDLSHNDFWGKIPSGTQLQSFNSSTYEGNP 901
Query: 535 ELCGLPLPNKC----RDEESAPGPGMTE 558
+LCG PL KC R E S P G +
Sbjct: 902 KLCGPPLLKKCLEDERGEHSPPNEGHVQ 929
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147795695|emb|CAN67736.1| hypothetical protein VITISV_022720 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 328 bits (842), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 221/524 (42%), Positives = 304/524 (58%), Gaps = 57/524 (10%)
Query: 58 SNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQ 117
+ +DLS+N+L+GSIPD+ +M L +L L NELEG IPK ++ NL + L + Q
Sbjct: 103 TTLAYLDLSWNKLRGSIPDAFGNMTSLAYLDLSLNELEGEIPKSLTDLCNLQE--LWLSQ 160
Query: 118 NMSSG--------CLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSI 169
N +G C N+LE L L N G PBL GFS ++ L+L N L GT+++SI
Sbjct: 161 NNLTGLKEKDYLACPNNTLEVLDLSYNQLKGSFPBLSGFSQLRELFLDFNQLKGTLHESI 220
Query: 170 GQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPG-IDISSNHFEGPIPPLPSN 228
GQ+ +L++ + NSL +G + + FG SN +D+S N L N
Sbjct: 221 GQLAQLQLLSIPSNSL--------RGTV-SANHLFGLSNLSYLDLSFN-------SLTFN 264
Query: 229 SSFLNLSKNRFSRSISLCSISGSK----LTYIDLSSNLLSGKLPDCWWMFDSLVILDLGN 284
S + + R S SISL + ++ L+++DLS+N LSG+LP+CW + L++LDL N
Sbjct: 265 ISLEQVPQFRASSSISLSCGTPNQPSWGLSHLDLSNNRLSGELPNCWEQWKDLIVLDLAN 324
Query: 285 NSFSGRIPDSMGFLQNIQT-QFTQQQF---------NRRTVFIVWEL--------LTTQT 326
N+FSG+I +S+G L +QT F N R + ++ +L +T
Sbjct: 325 NNFSGKIKNSIGLLHQMQTLHLRNNSFTGALPSSLKNCRALRLI-DLGKNKLSGKITAWM 383
Query: 327 FESWEERFV-RLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERS 385
S + V L+SN+F+G P LCQ +Q+LDLS NN+SGKIPKC N TAM Q+ S
Sbjct: 384 GGSLSDLIVLNLRSNEFNGSIPSSLCQLKQIQMLDLSSNNLSGKIPKCLKNLTAMAQKGS 443
Query: 386 SDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVP 445
P + Y T +HY D + WKG +EY+ TL IKS++ S N L G +P
Sbjct: 444 --PVLS--YETIYNLSIPYHYV--DSTLVQWKGKEQEYKKTLRFIKSIDFSRNXLIGEIP 497
Query: 446 EEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVM 505
E+ DLV LV+LNLSRN+L G IGQLK LD LDLS+NQL G IP +LS ++ LSV+
Sbjct: 498 IEVTDLVELVSLNLSRNNLIGSIPTTIGQLKLLDVLDLSQNQLNGRIPDTLSQIADLSVL 557
Query: 506 DLSYNNLSGKIPTGTQLQSFNGSVYAGNPELCGLPLPNKCRDEE 549
DLS N LSGKIP GTQLQSF+ S Y GNP LCG PL +C ++E
Sbjct: 558 DLSNNTLSGKIPLGTQLQSFDASTYEGNPGLCGPPLLIRCPEDE 601
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302143722|emb|CBI22583.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 326 bits (836), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 226/543 (41%), Positives = 300/543 (55%), Gaps = 65/543 (11%)
Query: 57 SSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNM-----LNLSDN 111
S + +DLS+NQL GSIPD+ +M L +L L N L G IP GNM L LS N
Sbjct: 189 SISLAHLDLSWNQLHGSIPDAFGNMTTLAYLDLSSNHLNGSIPDALGNMTTLAHLYLSAN 248
Query: 112 KLA--IIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSI 169
+L I +++ C L L+L N F G PDL GFS ++ LYL N LNGT+ +SI
Sbjct: 249 QLEGEIPKSLRDLCNLQILLFLYLSENQFKGSFPDLSGFSQLRELYLGFNQLNGTLPESI 308
Query: 170 GQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNS 229
GQ+ +L+ + NSL GT +S+NH G S
Sbjct: 309 GQLAQLQGLNIRSNSLQ------------------GT------VSANHLFGL-----SKL 339
Query: 230 SFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSG 289
L+LS N + +ISL S L ++DLS+N LSG+LP CW + L++L+L NN+FSG
Sbjct: 340 WDLDLSFNYLTVNISL-EQSSWGLLHVDLSNNQLSGELPKCWEQWKYLIVLNLTNNNFSG 398
Query: 290 RIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFE--------------SW----- 330
I +S+G L +QT + N T + L + +W
Sbjct: 399 TIKNSIGMLHQMQTLHLRN--NSLTGALPLSLKNCRDLRLIDLGKNKLSGKMPAWIGGNL 456
Query: 331 -EERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPT 389
+ V L+SN+F+G P LCQ +Q+LDLS NN+SG IPKC NN TAM Q S
Sbjct: 457 SDLIVVNLRSNEFNGSIPLNLCQLKKVQMLDLSSNNLSGIIPKCLNNLTAMGQNGSLVIA 516
Query: 390 IKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIM 449
+ + F S+ D + WKG EY+ TL L+KS++ S+NKLNG +P E+
Sbjct: 517 YEERLFVFDSS-----ISYIDNTVVQWKGKELEYKKTLRLVKSIDFSNNKLNGEIPIEVT 571
Query: 450 DLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSY 509
DLV L++LNLS+N+L G IGQLKSLDFLDLS+NQL GGIP SLS ++ LSV+DLS
Sbjct: 572 DLVELLSLNLSKNNLIGSIPLMIGQLKSLDFLDLSQNQLHGGIPVSLSQIAGLSVLDLSD 631
Query: 510 NNLSGKIPTGTQLQSFNGSVYAGNPELCGLPLPNKCRDEESAPGPGMTEGRDDADTSEDD 569
N LSGKIP+GTQL SFN S Y GNP LCG PL KC+++E+ T ++ D +D
Sbjct: 632 NILSGKIPSGTQLHSFNASTYDGNPGLCGPPLLKKCQEDETKE-VSFTSLINEKDIQDDT 690
Query: 570 MKI 572
I
Sbjct: 691 NNI 693
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225466147|ref|XP_002270042.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 324 bits (830), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 252/662 (38%), Positives = 345/662 (52%), Gaps = 158/662 (23%)
Query: 13 SLRYLNLEENNLANCSDWFQV---IGKLHSLKTLTSHSCYLRPLSNISSNFVSIDLSFNQ 69
SL YL++ EN L W + +GK+ L SH +DLS NQ
Sbjct: 316 SLAYLDISENQL-----WGSIPDTVGKM----VLLSH----------------LDLSLNQ 350
Query: 70 LQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSG------- 122
LQGSIPD+ +MV L+ LSL N L+G IPK N+ NL + L + +N SG
Sbjct: 351 LQGSIPDTVGNMVSLKKLSLSENHLQGEIPKSLSNLCNLQE--LELDRNNLSGQLAPDFV 408
Query: 123 -CLKNSLESL-----------------------HLEVNHFTGPIPD-LGGFSSMKRLYLS 157
C ++LE+L HL+ N G +P+ +G ++++ L ++
Sbjct: 409 ACANDTLETLFLSDNQFSGSVPALIGFSSLRELHLDFNQLNGTLPESVGQLANLQSLDIA 468
Query: 158 DNLLNG-----------------------TINKSIGQIFKLEITCL-------------- 180
N L G T N S+ + ++ L
Sbjct: 469 SNSLQGTISEAHLFNLSWLSYLNLSSNSLTFNMSLDWVPPFQLLSLRLASCKLGPRFPSW 528
Query: 181 --SQNSLTDL---------------------------ANIQIKGKLPDLSSRFGTSNPGI 211
+QN L++L +N +IKG LP+LSS FG S I
Sbjct: 529 LRTQNQLSELDISNSEISDVLPDWFWNVTSTVNTLSISNNRIKGTLPNLSSEFG-SFSNI 587
Query: 212 DISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCW 271
D+SSN FEG IP LP + +L+LS N+ S SISL G++L +DLS+N LSG LP+CW
Sbjct: 588 DMSSNCFEGSIPQLPYDVQWLDLSNNKLSGSISLLCTVGTELLLLDLSNNSLSGGLPNCW 647
Query: 272 WMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQ---------FNRRTVFIVWELL 322
++SLV+L+L NN FSG+IP S G L++IQT + F T +L
Sbjct: 648 AQWESLVVLNLENNRFSGQIPISFGSLRSIQTLHLRNNNLTGELPLSFKNCTSLRFIDLA 707
Query: 323 TTQ---TFESW------EERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKC 373
+ W + L SN+F G +LCQ +Q+LDLS NN+ G +P+C
Sbjct: 708 KNRLSGKIPEWIGGSLPNLTVLNLGSNRFSGGICPELCQLKNIQILDLSSNNMLGVVPRC 767
Query: 374 FNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYS------FQDKVMPTWKGSGREYRSTL 427
FTAMT++ S + V+ Y+F + YS + D+ + WKG EY+STL
Sbjct: 768 VGGFTAMTKKGS---LVIVHNYSFAD--FSSKYSLIRNAFYVDRALVKWKGREFEYKSTL 822
Query: 428 GLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQ 487
GL+KS++ SSNKL+G +PEE++DLV LV+LNLSRN+LT +IGQLKSL+ LDLS+NQ
Sbjct: 823 GLVKSIDFSSNKLSGEIPEEVIDLVELVSLNLSRNNLTRLIPARIGQLKSLEVLDLSQNQ 882
Query: 488 LVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTGTQLQSFNGSVYAGNPELCGLPLPNKCRD 547
L G IP+SL +S LSV+DLS NNLSGKIP GTQLQSFN Y GNP LCGLPL KC +
Sbjct: 883 LFGEIPASLVEISDLSVLDLSDNNLSGKIPQGTQLQSFNIDSYKGNPALCGLPLLKKCFE 942
Query: 548 EE 549
++
Sbjct: 943 DK 944
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359489995|ref|XP_003634011.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 323 bits (827), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 225/547 (41%), Positives = 310/547 (56%), Gaps = 58/547 (10%)
Query: 58 SNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQ 117
S+ ++L NQ+ G++P S + LE L + N L+G I + ++L+LS +L+ +
Sbjct: 313 SSLKELELDHNQINGTLPKSIGQLTKLEALIIGSNSLQGVISE--AHLLHLS--RLSYLD 368
Query: 118 --------NMSSGCLKN-SLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKS 168
NMSS + L L L P + ++ S ++ I+
Sbjct: 369 LSSNSFNFNMSSEWVPPFQLIFLQLTSCQLG---PRFPSWLRTQKQLQSLDISTSDISDV 425
Query: 169 IGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSN 228
I F +T L +++N QI G LP+LSS+F ID+SSNH EG IP LPS
Sbjct: 426 IPHWF-WNLTSLIY--FFNISNNQITGTLPNLSSKFDQP-LYIDMSSNHLEGSIPQLPSG 481
Query: 229 SSFLNLSKNRFSRSISL-CSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSF 287
S+L+LS N+FS SI+L C+++ S L Y+DLS+NLLSG+LP+CW + SL +L+L NN F
Sbjct: 482 LSWLDLSNNKFSGSITLLCTVANSYLAYLDLSNNLLSGELPNCWPQWKSLTVLNLENNQF 541
Query: 288 SGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLT------------------TQTFES 329
S +IP+S G LQ IQT + R ++ EL + +
Sbjct: 542 SRKIPESFGSLQLIQT------LHLRNKNLIGELPSSLKKCKSLSFIDLAKNRLSGEIPP 595
Query: 330 W------EERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQE 383
W + L+SNKF G ++CQ +Q+LDLS NN+SG IP+C +NFTAMT++
Sbjct: 596 WIGGNLPNLMVLNLQSNKFSGSISPEVCQLKKIQILDLSDNNMSGTIPRCLSNFTAMTKK 655
Query: 384 RSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGA 443
S T Y F H+S+ DK WKG E+++TLGL+KS++LSSNKL G
Sbjct: 656 ESLTIT-----YNFSMS--YQHWSYVDKEFVKWKGREFEFKNTLGLVKSIDLSSNKLTGE 708
Query: 444 VPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLS 503
+P+E+ DL+ LV+LN SRN+LTG IGQLKSLD LDLS+NQL+G IPSSLS + LS
Sbjct: 709 IPKEVTDLLELVSLNFSRNNLTGLIPITIGQLKSLDILDLSQNQLIGEIPSSLSEIDRLS 768
Query: 504 VMDLSYNNLSGKIPTGTQLQSFNGSVYAGNPELCGLPLPNKCRDEESAPGPGMTEGRDDA 563
+DLS NNLSG IP GTQLQSFN Y GNP LCG PL KC +++ P + DD
Sbjct: 769 TLDLSNNNLSGMIPQGTQLQSFNTFSYEGNPTLCGPPLLKKCPRDKAEGAPNVYSDEDDI 828
Query: 564 DTSEDDM 570
+DM
Sbjct: 829 QQDGNDM 835
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302143729|emb|CBI22590.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 229/582 (39%), Positives = 327/582 (56%), Gaps = 45/582 (7%)
Query: 11 LHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLT-SHSCYLRPLSNIS--SNFVSIDLSF 67
L +L+ L L NNLA + +L+ L SH+ ++ L ++ S+ + L
Sbjct: 25 LCNLQILKLHRNNLAGVLVKNLLACANDTLEILDLSHNQFIGSLPDLIGFSSLTRLHLGH 84
Query: 68 NQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPK--FFG----NMLNLSDNKLAIIQNMSS 121
NQL G++P+S + LE L + N L+G + + F L+LS N L + S
Sbjct: 85 NQLNGTLPESIAQLAQLELLKIPSNSLQGTVSEAHLFSLSKLQRLDLSFNSLLTLNLSSD 144
Query: 122 GCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGT-INKSIGQIFKLEITCL 180
+ L + L P G + K + D ++G+ I+ I F + L
Sbjct: 145 WVPQFQLTHIFLASCKLGPRFP--GWLRTQKGVGWLD--ISGSGISDVIPNWFWNFTSNL 200
Query: 181 SQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFS 240
++ +++N QI G +P+ S F + P +D+SSN+FEG IP + +L+LSKN FS
Sbjct: 201 NR---LNISNNQITGVVPNASIEF-SRFPQMDMSSNYFEGSIPVFIFYAGWLDLSKNMFS 256
Query: 241 RSIS-LCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQ 299
SIS LC++S Y+DLS+NLLSG+LP+CW ++ LV+L+L NN+FSG+I DS+G L+
Sbjct: 257 GSISSLCAVSRGASAYLDLSNNLLSGELPNCWAQWEGLVVLNLENNNFSGKIQDSIGSLE 316
Query: 300 NIQT------------QFTQQQFNRRTVFIVWELLTTQTFESWEER------FVRLKSNK 341
I++ + + + V + SW R + L+ N+
Sbjct: 317 AIESLHLRNNKLTGELPLSLKNCTKLRVIDLGRNKLCGNIPSWIGRSLPNLVVLNLRFNE 376
Query: 342 FHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTF-VGP 400
F+G P +CQ +Q+LDLS NNISG IP+CFNNFTAM Q+ S + Y YT
Sbjct: 377 FYGSIPMDMCQLKKIQILDLSNNNISGMIPRCFNNFTAMVQQGS---LVITYNYTIPCFK 433
Query: 401 PYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLS 460
P S+ DK M WKG EY TLGL+KS++LSSN+L+G +P E+ +L+ L++LNLS
Sbjct: 434 PLSRPSSYVDKQMVQWKGRELEYEKTLGLLKSIDLSSNELSGEIPREVTNLLDLISLNLS 493
Query: 461 RNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTGT 520
RN LTG P IGQLK++D LDLS N+L G IPS+LS + LSV+DLS+N+ GKIP+GT
Sbjct: 494 RNFLTGLIPPTIGQLKAMDALDLSWNRLFGKIPSNLSQIDRLSVLDLSHNDFWGKIPSGT 553
Query: 521 QLQSFNGSVYAGNPELCGLPLPNKC----RDEESAPGPGMTE 558
QLQSFN S Y GNP+LCG PL KC R E S P G +
Sbjct: 554 QLQSFNSSTYEGNPKLCGPPLLKKCLEDERGEHSPPNEGHVQ 595
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297737340|emb|CBI26541.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 321 bits (822), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 192/409 (46%), Positives = 255/409 (62%), Gaps = 39/409 (9%)
Query: 187 DLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISL- 245
+++N QI G LP+LSS+F ID+SSNH EG IP LPS S+L+LS N+FS SI+L
Sbjct: 79 NISNNQITGTLPNLSSKFDQP-LYIDMSSNHLEGSIPQLPSGLSWLDLSNNKFSGSITLL 137
Query: 246 CSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQF 305
C+++ S L Y+DLS+NLLSG+LP+CW + SL +L+L NN FS +IP+S G LQ IQT
Sbjct: 138 CTVANSYLAYLDLSNNLLSGELPNCWPQWKSLTVLNLENNQFSRKIPESFGSLQLIQT-- 195
Query: 306 TQQQFNRRTVFIVWELLT------------------TQTFESW------EERFVRLKSNK 341
+ R ++ EL + + W + L+SNK
Sbjct: 196 ----LHLRNKNLIGELPSSLKKCKSLSFIDLAKNRLSGEIPPWIGGNLPNLMVLNLQSNK 251
Query: 342 FHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPP 401
F G ++CQ +Q+LDLS NN+SG IP+C +NFTAMT++ S T Y ++
Sbjct: 252 FSGSISPEVCQLKKIQILDLSDNNMSGTIPRCLSNFTAMTKKESLTIT---YNFSMS--- 305
Query: 402 YVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSR 461
H+S+ DK WKG E+++TLGL+KS++LSSNKL G +P+E+ DL+ LV+LN SR
Sbjct: 306 -YQHWSYVDKEFVKWKGREFEFKNTLGLVKSIDLSSNKLTGEIPKEVTDLLELVSLNFSR 364
Query: 462 NHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTGTQ 521
N+LTG IGQLKSLD LDLS+NQL+G IPSSLS + LS +DLS NNLSG IP GTQ
Sbjct: 365 NNLTGLIPITIGQLKSLDILDLSQNQLIGEIPSSLSEIDRLSTLDLSNNNLSGMIPQGTQ 424
Query: 522 LQSFNGSVYAGNPELCGLPLPNKCRDEESAPGPGMTEGRDDADTSEDDM 570
LQSFN Y GNP LCG PL KC +++ P + DD +DM
Sbjct: 425 LQSFNTFSYEGNPTLCGPPLLKKCPRDKAEGAPNVYSDEDDIQQDGNDM 473
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 574 | ||||||
| TAIR|locus:2085537 | 894 | RLP34 "AT3G11010" [Arabidopsis | 0.482 | 0.309 | 0.295 | 3.9e-39 | |
| TAIR|locus:2096349 | 860 | RLP31 "receptor like protein 3 | 0.848 | 0.566 | 0.288 | 2.6e-38 | |
| TAIR|locus:2119535 | 725 | RLP48 "receptor like protein 4 | 0.731 | 0.579 | 0.284 | 3.1e-38 | |
| TAIR|locus:2074633 | 943 | RLP35 "AT3G11080" [Arabidopsis | 0.536 | 0.326 | 0.292 | 8.9e-38 | |
| TAIR|locus:2094603 | 835 | RLP37 "receptor like protein 3 | 0.841 | 0.578 | 0.281 | 2.2e-37 | |
| TAIR|locus:2046585 | 808 | RLP27 "receptor like protein 2 | 0.862 | 0.612 | 0.276 | 1.5e-36 | |
| TAIR|locus:2180587 | 811 | RLP52 "receptor like protein 5 | 0.836 | 0.591 | 0.278 | 5.1e-36 | |
| TAIR|locus:2078102 | 875 | RLP33 "receptor like protein 3 | 0.491 | 0.322 | 0.317 | 1.5e-35 | |
| TAIR|locus:2090754 | 711 | RLP43 "receptor like protein 4 | 0.487 | 0.393 | 0.289 | 2.1e-35 | |
| TAIR|locus:2037308 | 976 | RLP14 "AT1G74180" [Arabidopsis | 0.869 | 0.511 | 0.284 | 6e-35 |
| TAIR|locus:2085537 RLP34 "AT3G11010" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 278 (102.9 bits), Expect = 3.9e-39, Sum P(2) = 3.9e-39
Identities = 88/298 (29%), Positives = 138/298 (46%)
Query: 273 MFDSLVILDLGNNSFSGRIPDSMGFLXXXXXXXXXXXXXXXTVFIVWELLTTQTFESWEE 332
+F+SL LD+G+N G++P S+ F +F W L + Q +
Sbjct: 564 IFESLRSLDVGHNQLVGKLPRSLRFFSNLEVLNVESNRIND-MFPFW-LSSLQKLQ---- 617
Query: 333 RFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIP-KCFNNFTAMTQERSSDPTIK 391
+ L+SN FHG P F L+++D+S N+ +G +P + F ++ M+ + +
Sbjct: 618 -VLVLRSNAFHG--PINQALFPKLRIIDISHNHFNGSLPTEYFVEWSRMSSLGTYEDGSN 674
Query: 392 VYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDL 451
V Y +G Y +QD ++ KG E L + +++ S NK G +P+ I L
Sbjct: 675 VNY---LGSGY-----YQDSMVLMNKGVESELVRILTIYTAVDFSGNKFEGEIPKSIGLL 726
Query: 452 VGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIXXXXXXXXXXXXMDLSYNN 511
L LNLS N TG IG L +L+ LD+S+N+L G I M+ S+N
Sbjct: 727 KELHVLNLSNNAFTGHIPSSIGNLTALESLDVSQNKLYGEIPQEIGNLSLLSYMNFSHNQ 786
Query: 512 LSGKIPTGTQLQSFNGSVYAGNPELCGLPLPNKCRDEESAPGPGMTEGRDDADTSEDD 569
L+G +P G Q + S + GN L G L CRD + P + + T E+D
Sbjct: 787 LTGLVPGGQQFLTQRCSSFEGNLGLFGSSLEEVCRDIHT---PASHQQFETPQTEEED 841
|
|
| TAIR|locus:2096349 RLP31 "receptor like protein 31" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 419 (152.6 bits), Expect = 2.6e-38, P = 2.6e-38
Identities = 151/524 (28%), Positives = 224/524 (42%)
Query: 59 NFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNK-LAIIQ 117
N + +DLSFN L GS P + LE ++L N L+G P FGNM + S K L Q
Sbjct: 303 NLIELDLSFNNLTGSFPTFLFTIPTLERVNLEGNHLKG--PVEFGNMSSSSSLKFLNFAQ 360
Query: 118 NMSSGCLKNS------LESLHLEVNHFTGPIP-DLGGFSSMKRLYLSDNLLNGTINKSIG 170
N +G + S LE LHL N+F G IP + + ++ L DN + G +
Sbjct: 361 NEFNGSIPESVSQYLNLEELHLSFNNFIGTIPRSISKLAKLEYFCLEDNNMVGEVPS--- 417
Query: 171 QIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGP----IXXXX 226
+++L + LS NS +G L + ++ +D+SSN F+GP I
Sbjct: 418 WLWRLTMVALSNNSFNSFGESS-EG-LDETQVQW------LDLSSNSFQGPFPHWICKLR 469
Query: 227 XXXXXXXXXXXXXXXXXXXXXXXXXKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNS 286
LT + L +N LSG LPD + L+ LD+ N
Sbjct: 470 SLEILIMSDNRFNGSIPPCLSSFMVSLTDLILRNNSLSGPLPDIFVNATKLLSLDVSRNK 529
Query: 287 FSGRIPDSMGFLXXXXXXXXXXXXXXXTVFIVWELLTTQTFESWEERFVRLKSNKFHGKT 346
G +P S+ F W L + + + L+SN+F+G
Sbjct: 530 LDGVLPKSLIHCKAMQLLNVRSNKIKDK-FPSW-LGSLPSLH-----VLILRSNEFYGTL 582
Query: 347 --PFQLCQFAFLQVLDLSLNNISGKIPKC-FNNFTAMTQERSSDPTIKVYYYTFVGPPYV 403
P F L+V+D+S N++ G +P F+++ M++ D ++ ++G
Sbjct: 583 YQPHASIGFQSLRVIDVSHNDLIGTLPSFYFSSWREMSRLTGEDGDFRLSEAPYMGKVLN 642
Query: 404 HHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNH 463
F D + KG E++ K + S N+ +G +PE I L L LNLS N
Sbjct: 643 ATAFFVDSMEIVNKGVETEFKRINEENKVINFSGNRFSGNIPESIGLLKELRHLNLSSNA 702
Query: 464 LTGQNSPKIGQLKSLDFLDLSRNQLVGGIXXXXXXXXXXXXMDLSYNNLSGKIPTGTQLQ 523
TG + L L+ LDLS NQL G I M+ SYN L G +P TQ Q
Sbjct: 703 FTGNIPQSLANLMKLEALDLSLNQLSGQIPQGLGSLSFMSTMNFSYNFLEGPVPKSTQFQ 762
Query: 524 SFNGSVYAGNPELCGLPLPNKCRDEESAPGPGMTEGRDDADTSE 567
N S + NP+L GL CR+ + P P E +D ++ E
Sbjct: 763 GQNCSAFMENPKLNGLE--EICRETDRVPNPKPQESKDLSEPEE 804
|
|
| TAIR|locus:2119535 RLP48 "receptor like protein 48" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 356 (130.4 bits), Expect = 3.1e-38, Sum P(2) = 3.1e-38
Identities = 129/454 (28%), Positives = 195/454 (42%)
Query: 144 DLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSL--TDLANIQIKGKLPDLS 201
DL G + LS GT+ + I + +Q SL D++ I+G++P+
Sbjct: 255 DLSGINLKISSTLSFPSATGTLILASCNIVEFPKFLENQTSLFYLDISANHIEGQVPEWL 314
Query: 202 SRFGTSNPGIDISSNHFEGPIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLTYIDLSSN 261
R T + ++I+ N F G + L + LS+N
Sbjct: 315 WRLPTLS-FVNIAQNSFSGELPMLPNSIYSFIASDNQFSGEIPRTVCELVSLNTLVLSNN 373
Query: 262 LLSGKLPDCWWMFDSLVILDLGNNSFSGRIP-----DSMGFLXXXXXXXXXXXXXXXTVF 316
SG +P C+ F ++ IL L NNS SG P +++ L
Sbjct: 374 KFSGSIPRCFENFKTISILHLRNNSLSGVFPKEIISETLTSLDVGHNWLSGQLPKSLIKC 433
Query: 317 IVWELLTTQT------FESWEE-----RFVRLKSNKFHGKTPFQL---CQFAFLQVLDLS 362
E L + F W + + L+SN+F+G F L F L++ D+S
Sbjct: 434 TDLEFLNVEDNRINDKFPFWLRSLSNLQILVLRSNEFYGPI-FSLEDSLSFPKLRIFDIS 492
Query: 363 LNNISGKIPK-CFNNFTAMTQERSS-DPTIKVYYY-TFVGPPYVHHYSFQDKVMPTWKGS 419
N+ +G +P F ++AM+ D T +V+ F G Y H+ V+ T KG
Sbjct: 493 ENHFTGVLPSDYFAGWSAMSSVVDIFDTTPQVHILGVFQG--YYHN-----SVVLTNKGL 545
Query: 420 GREY-RSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSL 478
E S + K++++S N+L G +PE I L L+ LN+S N TG P + L +L
Sbjct: 546 NMELVGSGFTIYKTIDVSGNRLEGDIPESIGILKELIVLNMSNNAFTGHIPPSLSNLSNL 605
Query: 479 DFLDLSRNQLVGGIXXXXXXXXXXXXMDLSYNNLSGKIPTGTQLQSFNGSVYAGNPELCG 538
LDLS+N+L G I M+ SYN L G IP TQ+QS N S +A NP LCG
Sbjct: 606 QSLDLSQNRLSGSIPPELGKLTFLEWMNFSYNRLEGPIPQATQIQSQNSSSFAENPGLCG 665
Query: 539 LPLPNKCRDEESAPGPGMTEGRDDADTSEDDMKI 572
P NKC EE + D+ + E+ ++
Sbjct: 666 APFLNKCGGEEEEEEEATKQEEDEDEEKEEKNQV 699
|
|
| TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 293 (108.2 bits), Expect = 8.9e-38, Sum P(2) = 8.9e-38
Identities = 99/339 (29%), Positives = 154/339 (45%)
Query: 253 LTYIDLSSNLLSGKLPDCWWMFDS-LVILDLGNNSFSGRIP----DSMGFLXXXXXXXXX 307
L +DLS N +G +P C S L +L+L N+ SG +P +S+ L
Sbjct: 571 LNTLDLSENNYNGSIPRCMEKLKSTLFVLNLRQNNLSGGLPKHIFESLRSLDVGHNLLVG 630
Query: 308 XXXXXXTVFIVWELLTTQ------TFESWEERFVRL-----KSNKFHGKTPFQLCQFAFL 356
F E+L + TF W +L +SN FHG P F L
Sbjct: 631 KLPRSLIRFSNLEVLNVESNRINDTFPFWLSSLSKLQVLVLRSNAFHG--PIHEATFPEL 688
Query: 357 QVLDLSLNNISGKIP-KCFNNFTAMTQ-ERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMP 414
+++D+S N+ +G +P + F ++AM+ ++ D + + Y +G Y +QD ++
Sbjct: 689 RIIDISHNHFNGTLPTEYFVKWSAMSSLGKNEDQSNEKY----MGSGL---Y-YQDSMVL 740
Query: 415 TWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQ 474
KG E L + +L+ S NK G +P+ I L L+ LNLS N G +G
Sbjct: 741 MNKGLAMELVRILTIYTALDFSGNKFEGEIPKSIGLLKELLVLNLSNNAFGGHIPSSMGN 800
Query: 475 LKSLDFLDLSRNQLVGGIXXXXXXXXXXXXMDLSYNNLSGKIPTGTQLQSFNGSVYAGNP 534
L +L+ LD+S+N+L G I M+ S+N L+G +P GTQ + N S + N
Sbjct: 801 LTALESLDVSQNKLTGEIPQELGDLSFLAYMNFSHNQLAGLVPGGTQFRRQNCSAFENNL 860
Query: 535 ELCGLPLPNKCRDEESAPGPGMTEGRDDADTSEDDMKIS 573
L G L CRD+ + P + ED+ +IS
Sbjct: 861 GLFGPSLDEVCRDKHT---PASQQNETTETEEEDEEEIS 896
|
|
| TAIR|locus:2094603 RLP37 "receptor like protein 37" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 410 (149.4 bits), Expect = 2.2e-37, P = 2.2e-37
Identities = 148/526 (28%), Positives = 224/526 (42%)
Query: 57 SSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAII 116
SS +D+S+N L G IP S +V LEHL L N G +P ++NL L +
Sbjct: 279 SSKLTELDVSYNNLDGLIPKSISTLVSLEHLELSHNNFRGQVPSSISKLVNLDG--LYLS 336
Query: 117 QNMSSGCLKNSLESL----HLEVNH--FTGPIPD-LGGFSSMKRLYLSDNLLNGTINKSI 169
N G + +S+ L HL+++H F G +P + ++ L LS N G + + I
Sbjct: 337 HNNFGGQVPSSIFKLVNLEHLDLSHNDFGGRVPSSISKLVNLSSLDLSYNKFEGHVPQCI 396
Query: 170 GQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIXXXXXXX 229
+ KL+ LS NS G++ +L + D+SSN +GPI
Sbjct: 397 WRSSKLDSVDLSYNSFNSF------GRILELGDE--SLERDWDLSSNSLQGPIPQWICNF 448
Query: 230 XXXXXXXXXXXXXXXXXXXXXXKLT--Y-IDLSSNLLSGKLPDCWWMFDSLVILDLGNNS 286
T Y ++L +N LSG +PD L LD+ N+
Sbjct: 449 RFFSFLDFSNNHLNGSIPQCLKNSTDFYMLNLRNNSLSGFMPDFCMDGSMLGSLDVSLNN 508
Query: 287 FSGRIPDSMGFLXXXXXXXXXXXXXXXTVFIVWELLTTQTFESWEERFVRLKSNKFHGKT 346
G++P+S T F VW L + Q + L+SN F+G
Sbjct: 509 LVGKLPESFINCEWMEYLNVRGNKIKDT-FPVW-LGSLQYLT-----VLVLRSNTFYGPV 561
Query: 347 PFQLCQFAF--LQVLDLSLNNISGKIPK-CFNNFTAMTQERSSDPTIKVYYYTFVGPP-- 401
F ++++D+S NN G +P+ F N+T M+ P + + Y + P
Sbjct: 562 YKASAYLGFPSMRIMDISNNNFVGSLPQDYFANWTEMSSVWQR-PMLTLDYKRNIAIPGS 620
Query: 402 -YVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLS 460
Y+ + QD + +KG ++ G K ++ S N+ +G +P I L L+ LNLS
Sbjct: 621 NYMGDDNHQDSIDLVYKGVDTDFEQIFGGFKVIDFSGNRFSGHIPRSIGLLSELLHLNLS 680
Query: 461 RNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIXXXXXXXXXXXXMDLSYNNLSGKIPTGT 520
N TG P + + L+ LDLSRN L G I ++ S+N+L G +P T
Sbjct: 681 GNAFTGNIPPSLASITKLETLDLSRNNLSGEIPRGLGKLSFLSNINFSHNHLEGLVPQST 740
Query: 521 QLQSFNGSVYAGNPEL------CG---LPLPNKCRDEESAPGPGMT 557
Q S N S + GNP L CG +P+P EE P T
Sbjct: 741 QFGSQNCSSFMGNPRLYGLDQICGETHVPIPTSLHPEEPLLEPEET 786
|
|
| TAIR|locus:2046585 RLP27 "receptor like protein 27" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 402 (146.6 bits), Expect = 1.5e-36, P = 1.5e-36
Identities = 150/542 (27%), Positives = 233/542 (42%)
Query: 52 PLSNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIP-KFFGNM----- 105
P S+ SS + L N +G I + ++ L+HL L F + I F +
Sbjct: 212 PNSSTSSRLEFMYLGNNHFEGQILEPISKLINLKHLDLSFLKTSYPIDLNLFSSFKSLVR 271
Query: 106 LNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNLLNGT 164
L LS N L S + +LE+L L ++ P L + ++ + LS+N + G
Sbjct: 272 LVLSGNSLLATSITSDSKIPLNLENLVL-LSCGLIEFPTILKNLTKLEHIDLSNNKIKGK 330
Query: 165 INKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIXX 224
+ + + +L L N TDL + L + S R +D++ NHF GP
Sbjct: 331 VPEWFWNLPRLRRVNLFNNLFTDLEGSE--EVLVNSSVRL------LDLAYNHFRGPFPK 382
Query: 225 XXXXXXXXXXXXXXXXXXXXXXXXXXXKLTYIDLSSNLLSGKLPDCWWMF-DSLVILDLG 283
L +DLS N L+G +P C F +SL++++L
Sbjct: 383 PPLSINLLSAWNNSFTGNIPLETCNRSSLAILDLSYNNLTGPIPRCLSDFQESLIVVNLR 442
Query: 284 NNSFSGRIPD-----------SMGFLXXXXXXXXXXXXXXXTVFI-VWELLTTQTFESW- 330
N+ G +PD +G+ F+ V TF W
Sbjct: 443 KNNLEGSLPDIFSDGALLRTLDVGYNQLTGKLPRSLLNCSMLRFVSVDHNKIKDTFPFWL 502
Query: 331 ----EERFVRLKSNKFHGK-TPFQLCQFAF--LQVLDLSLNNISGKIP-KCFNNFTAMTQ 382
+ + + L+SNKFHG +P AF L++L++S NN +G +P F N+ A +
Sbjct: 503 KALPDLQALTLRSNKFHGPISPPDRGPLAFPKLRILEISDNNFTGSLPPNYFVNWEASSL 562
Query: 383 ERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNG 442
+ + D ++Y + P Y+ ++D V +KG E L +++ S NKL G
Sbjct: 563 QMNEDG--RIYMGDYNNPYYI----YEDTVDLQYKGLFMEQGKVLTSYATIDFSGNKLEG 616
Query: 443 AVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIXXXXXXXXXX 502
+PE I L L+ALNLS N TG + + L+ LDLSRNQL G I
Sbjct: 617 QIPESIGLLKALIALNLSNNAFTGHIPLSLANVTELESLDLSRNQLSGTIPNGLKTLSFL 676
Query: 503 XXMDLSYNNLSGKIPTGTQLQSFNGSVYAGNPELCGLPLPNKCRDEESAPGPGMTEGRDD 562
+ +++N L G+IP GTQ+ + S + GN LCGLPL C + P P E +D
Sbjct: 677 AYISVAHNQLIGEIPQGTQITGQSKSSFEGNAGLCGLPLQGSCF---APPTPQPKEEDED 733
Query: 563 AD 564
+
Sbjct: 734 EE 735
|
|
| TAIR|locus:2180587 RLP52 "receptor like protein 52" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 397 (144.8 bits), Expect = 5.1e-36, P = 5.1e-36
Identities = 148/531 (27%), Positives = 225/531 (42%)
Query: 59 NFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQN 118
N + L N L G IP S L HL L N L G IP+ GN+ NL L + N
Sbjct: 260 NLTELYLFANDLTGEIPKSISAK-NLVHLDLSANNLNGSIPESIGNLTNLE--LLYLFVN 316
Query: 119 MSSGCLKNS------LESLHLEVNHFTGPIP-DLGGFSSMKRLYLSDNLLNGTINKSIGQ 171
+G + + L+ L L N TG IP ++G S ++R +S+N L G + +++
Sbjct: 317 ELTGEIPRAIGKLPELKELKLFTNKLTGEIPAEIGFISKLERFEVSENQLTGKLPENLCH 376
Query: 172 IFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIXXXXXXXXX 231
KL+ + N+LT G++P+ T + + + +N F G +
Sbjct: 377 GGKLQSVIVYSNNLT--------GEIPESLGDCETLS-SVLLQNNGFSGSVTISNNTRSN 427
Query: 232 XXXXXXXXXXXXXXXXXXXXKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRI 291
L +DLS+N +G +P C +L +L+LG N SG I
Sbjct: 428 NNFTGKIPSFICELHS-----LILLDLSTNKFNGSIPRCIANLSTLEVLNLGKNHLSGSI 482
Query: 292 PDSMGFLXXXXXXXXXXXXXXXTVFIV----WELLTTQ------TFESWEERFVRL---- 337
P+++ +V E+L + TF W + +L
Sbjct: 483 PENISTSVKSIDIGHNQLAGKLPRSLVRISSLEVLNVESNKINDTFPFWLDSMQQLQVLV 542
Query: 338 -KSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIP-KCFNNFTAMTQERSSDPTIKVYYY 395
+SN FHG F+ L+++D+S N+ +G +P F N+TAM S I+ Y
Sbjct: 543 LRSNAFHGS--INQNGFSKLRIIDISGNHFNGTLPLDFFVNWTAMF----SLGKIEDQY- 595
Query: 396 TFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLV 455
+G Y+ + D ++ KG E L +++ S NK G +P + L L
Sbjct: 596 --MGTNYMRTNYYSDSIVVMIKGIALEMVRILNTFTTIDFSGNKFEGEIPRSVGLLKELH 653
Query: 456 ALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIXXXXXXXXXXXXMDLSYNNLSGK 515
LNLS N TG +G L L+ LD+S+N+L G I M+ S N G
Sbjct: 654 VLNLSNNGFTGHIPSSMGNLIELESLDVSQNKLSGEIPPELGKLSYLAYMNFSQNQFVGL 713
Query: 516 IPTGTQLQSFNGSVYAGNPELCGLPLPNKCRD-EESAPGPG-MTEGRDDAD 564
+P GTQ Q+ S +A NP L GL L C D + P M E +D +
Sbjct: 714 VPGGTQFQTQPCSSFADNPRLFGLSLERVCVDIHKKTPQQSEMPEPEEDEE 764
|
|
| TAIR|locus:2078102 RLP33 "receptor like protein 33" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 306 (112.8 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
Identities = 99/312 (31%), Positives = 144/312 (46%)
Query: 253 LTYIDLSSNLLSGKLPDCWWMFDS-LVILDLGNNSFSGRIPD----SMGFLXXXXXXXXX 307
L +DLS+N SG +P C F S L L+L N SG +P S+ L
Sbjct: 505 LIILDLSNNNFSGAIPPCVGKFKSTLSDLNLRRNRLSGSLPKTIIKSLRSLDVSHNELEG 564
Query: 308 XXXXXXTVFIVWELLTTQ------TFESWEERFVRL-----KSNKFHGKTPFQLCQFAFL 356
F E+L + TF W +L +SN FHG+ +F L
Sbjct: 565 KLPRSLIHFSTLEVLNVESNRINDTFPFWLSSLKKLQVLVLRSNAFHGR--IHKTRFPKL 622
Query: 357 QVLDLSLNNISGKIPK-CFNNFTAM-TQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMP 414
+++D+S N+ +G +P CF +T M + E++ D + Y +G Y H D ++
Sbjct: 623 RIIDISRNHFNGTLPSDCFVEWTGMHSLEKNEDRFNEKY----MGSGYYH-----DSMVL 673
Query: 415 TWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQ 474
KG E L + +L+ S NK G +P I L L LNLS N TG +G
Sbjct: 674 MNKGLEMELVRILKIYTALDFSGNKFEGEIPRSIGLLKELHILNLSSNGFTGHIPSSMGN 733
Query: 475 LKSLDFLDLSRNQLVGGIXXXXXXXXXXXXMDLSYNNLSGKIPTGTQLQSFNGSVYAGNP 534
L+ L+ LD+SRN+L G I M+ S+N L G++P GTQ ++ + S + N
Sbjct: 734 LRELESLDVSRNKLSGEIPQELGNLSYLAYMNFSHNQLVGQVPGGTQFRTQSASSFEENL 793
Query: 535 ELCGLPLPNKCR 546
LCG PL +CR
Sbjct: 794 GLCGRPL-EECR 804
|
|
| TAIR|locus:2090754 RLP43 "receptor like protein 43" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 276 (102.2 bits), Expect = 2.1e-35, Sum P(2) = 2.1e-35
Identities = 87/301 (28%), Positives = 140/301 (46%)
Query: 273 MFDSLVILDLGNNSFSGRIPDSMGFLXXXXXXXXXXXXXXXTVFIVWELLTTQTFESWEE 332
+F+ L LD+G+N G++P S+ F T F W LT+ +
Sbjct: 381 IFEILRSLDVGHNQLVGKLPRSLRFFSTLEVLNVESNRINDT-FPFW--LTSLP----KL 433
Query: 333 RFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPK-CFNNFTAMTQERSSDPTIK 391
+ + L+SN FHG P F L+++D+S N+ +G +P F ++AM+ + +
Sbjct: 434 QVLVLRSNAFHG--PIHEASFLKLRIIDISHNHFNGTLPSDYFVKWSAMSSLGTDEDRSN 491
Query: 392 VYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDL 451
Y +G Y +QD ++ KG E L + +L+ S NK G +P+ I L
Sbjct: 492 ANY---MGSVY-----YQDSMVLMNKGVESELIRILTIYTALDFSGNKFEGEIPKSIGLL 543
Query: 452 VGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIXXXXXXXXXXXXMDLSYNN 511
L+ LNLS N TG +G+L +L+ LD+S+N+L G I M+ S+N
Sbjct: 544 KELLVLNLSNNAFTGHIPSSMGKLTALESLDVSQNKLYGEIPQEIGNLSFLSCMNFSHNQ 603
Query: 512 LSGKIPTGTQLQSFNGSVYAGNPELCGLPLPNKCRDEESAPGPGMTEGRDDADTSEDDMK 571
L+G +P G Q + S + N L G L CRD + P + +T E+D +
Sbjct: 604 LAGLVPGGQQFLTQPCSSFEDNLGLFGSTLEEDCRDIHT---PASHQQYKTPETEEEDEE 660
Query: 572 I 572
+
Sbjct: 661 V 661
|
|
| TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 389 (142.0 bits), Expect = 6.0e-35, P = 6.0e-35
Identities = 156/548 (28%), Positives = 230/548 (41%)
Query: 43 LTSHSCYLRPLSNISSNFVSIDLSFNQLQGSIPDSSQHMV-YLEHLSLMFNELEGGIPKF 101
L ++S + + I +D S N + G +PD+ H++ L H++ N +G +P
Sbjct: 414 LKNNSFTIFQIPTIVHKLQVLDFSANDITGVLPDNIGHVLPRLLHMNGSHNGFQGNLPSS 473
Query: 102 FGNM-----LNLSDNKLA--IIQNMSSGCLKNSLESLHLEVNHFTGPI-PDLGGFSSMKR 153
G M L+LS N + + +++ +GC SL +L L N F+GPI P +S+
Sbjct: 474 MGEMNDISFLDLSYNNFSGELPRSLLTGCF--SLITLQLSHNSFSGPILPIQTRLTSLIV 531
Query: 154 LYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDI 213
L + +NL G I + + L I S N LT L I +P SS + +
Sbjct: 532 LRMHNNLFTGEIGVGLRTLVNLSIFDASNNRLTGL----ISSSIPPDSSHLIM----LLL 583
Query: 214 SSNHFEGPIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLTY---IDLSSNLLSGKLPDC 270
S+N EG + Y I L +N +G LP
Sbjct: 584 SNNLLEGTLPPSLLAIHHLNFLDLSGNLLSGDLPSSVVNSMYGIKIFLHNNSFTGPLPVT 643
Query: 271 WWMFDSLVILDLGNNSFSGRIPDSMGFLXXXXXXXXXXXXXXXTVFIVWELLTTQTFESW 330
+ ++ ILDL NN SG IP F+ T I +L +
Sbjct: 644 --LLENAYILDLRNNKLSGSIPQ---FVNTGKMITLLLRGNNLTGSIPRKLCDLTSI--- 695
Query: 331 EERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSS---D 387
R + L NK +G P L + + L+ S +I F + M RS+ D
Sbjct: 696 --RLLDLSDNKLNGVIPPCLNHLSTELGEGIGLSGFSQEIS--FGDSLQMEFYRSTFLVD 751
Query: 388 PTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEE 447
+ Y T++ + F K G TL + L+LSSN+L+G +P E
Sbjct: 752 EFMLYYDSTYM----IVEIEFAAKQRYDSFSGG-----TLDYMYGLDLSSNELSGVIPAE 802
Query: 448 IMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIXXXXXXXXXXXXMDL 507
+ DL L ALNLSRN L+ +LK ++ LDLS N L G I ++
Sbjct: 803 LGDLSKLRALNLSRNLLSSSIPANFSKLKDIESLDLSYNMLQGNIPHQLTNLTSLAVFNV 862
Query: 508 SYNNLSGKIPTGTQLQSFNGSVYAGNPELCGLPLPNKC---RDEESAPGPGMTEGRDDAD 564
S+NNLSG IP G Q +FN + Y GNP LCG P C ++ + A G E DD D
Sbjct: 863 SFNNLSGIIPQGGQFNTFNDNSYLGNPLLCGTPTDRSCEGKKNTKEADNGGEEEEEDDDD 922
Query: 565 TSEDDMKI 572
+ DM +
Sbjct: 923 EAAIDMVV 930
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 574 | |||
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 2e-45 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 5e-42 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 5e-35 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 1e-17 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 1e-16 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-15 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 2e-12 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-07 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 3e-07 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 8e-05 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 8e-05 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 5e-04 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 9e-04 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 0.001 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 0.004 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 172 bits (437), Expect = 2e-45
Identities = 177/565 (31%), Positives = 254/565 (44%), Gaps = 113/565 (20%)
Query: 13 SLRYLNLEENNLANCSDWFQVIGKLHSLKTLT-SHSCYLRPLSN---ISSNFVSIDLSFN 68
SLRYLNL NN G + +L+TL S++ + N S+ +DL N
Sbjct: 119 SLRYLNLSNNNFTGSIPR----GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGN 174
Query: 69 QLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLK--- 125
L G IP+S ++ LE L+L N+L G IP+ G M +L L N+S
Sbjct: 175 VLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLG-YNNLSGEIPYEIG 233
Query: 126 --NSLESLHLEVNHFTGPIP-DLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQ 182
SL L L N+ TGPIP LG +++ L+L N L+G I SI + KL LS
Sbjct: 234 GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSD 293
Query: 183 NSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIP----PLPSNSSFLNLSKNR 238
NSL+ G++P+L + + + SN+F G IP LP L L N+
Sbjct: 294 NSLS--------GEIPELVIQLQNLEI-LHLFSNNFTGKIPVALTSLP-RLQVLQLWSNK 343
Query: 239 FSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFL 298
FS I + LT +DLS+N L+G++P+ +L L L +NS G IP S+G
Sbjct: 344 FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGAC 403
Query: 299 QNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQV 358
+++ R VRL+ N F G+ P + + +
Sbjct: 404 RSL-------------------------------RRVRLQDNSFSGELPSEFTKLPLVYF 432
Query: 359 LDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKG 418
LD+S NN+ G+I + + S + + F G +P G
Sbjct: 433 LDISNNNLQGRI-------NSRKWDMPSLQMLSLARNKFFGG------------LPDSFG 473
Query: 419 SGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSL 478
S R +++L+LS N+ +GAVP ++ L L+ L LS N L+G+ ++ K L
Sbjct: 474 SKR--------LENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKL 525
Query: 479 DFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIP--------------------- 517
LDLS NQL G IP+S S + VLS +DLS N LSG+IP
Sbjct: 526 VSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585
Query: 518 ----TGTQLQSFNGSVYAGNPELCG 538
TG L + N S AGN +LCG
Sbjct: 586 SLPSTGAFL-AINASAVAGNIDLCG 609
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 161 bits (410), Expect = 5e-42
Identities = 154/496 (31%), Positives = 220/496 (44%), Gaps = 78/496 (15%)
Query: 55 NISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNM------LNL 108
N SS VSIDLS + G I + + Y++ ++L N+L G IP LNL
Sbjct: 66 NNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL 125
Query: 109 SDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIP-DLGGFSSMKRLYLSDNLLNGTINK 167
S+N ++ G + N LE+L L N +G IP D+G FSS+K L L N+L G I
Sbjct: 126 SNNNFT--GSIPRGSIPN-LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN 182
Query: 168 SIGQIFKLEITCLSQNSLTD----------------LANIQIKGKLPDLSSRFGTSNPGI 211
S+ + LE L+ N L L + G++P + N +
Sbjct: 183 SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLN-HL 241
Query: 212 DISSNHFEGPIPPLPSNSS---FLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLP 268
D+ N+ GPIP N +L L +N+ S I S KL +DLS N LSG++P
Sbjct: 242 DLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP 301
Query: 269 DCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFE 328
+ +L IL L +N+F+G+IP ++ L +Q
Sbjct: 302 ELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQV------------------------- 336
Query: 329 SWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCF----NNFTAMTQER 384
++L SNKF G+ P L + L VLDLS NN++G+IP+ N F +
Sbjct: 337 ------LQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSN 390
Query: 385 SSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRS---TLGLIKSLELSSNKLN 441
S + I P + +V E S L L+ L++S+N L
Sbjct: 391 SLEGEI---------PKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQ 441
Query: 442 GAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSV 501
G + D+ L L+L+RN G P K L+ LDLSRNQ G +P L LS
Sbjct: 442 GRINSRKWDMPSLQMLSLARNKFFG-GLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSE 500
Query: 502 LSVMDLSYNNLSGKIP 517
L + LS N LSG+IP
Sbjct: 501 LMQLKLSENKLSGEIP 516
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 5e-35
Identities = 115/351 (32%), Positives = 170/351 (48%), Gaps = 46/351 (13%)
Query: 177 ITC--LSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIP----PLPSNSS 230
ITC S+ DL+ I GK+ R I++S+N GPIP S+
Sbjct: 63 ITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQT-INLSNNQLSGPIPDDIFTTSSSLR 121
Query: 231 FLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGR 290
+LNLS N F+ SI SI L +DLS+N+LSG++P+ F SL +LDLG N G+
Sbjct: 122 YLNLSNNNFTGSIPRGSIPN--LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGK 179
Query: 291 IPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQL 350
IP+S+ L +++ F N+ I EL ++ +++ L N G+ P+++
Sbjct: 180 IPNSLTNLTSLE--FLTLASNQLVGQIPRELGQMKSL-----KWIYLGYNNLSGEIPYEI 232
Query: 351 CQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQD 410
L LDL NN++G IP N + Y F+ +Q+
Sbjct: 233 GGLTSLNHLDLVYNNLTGPIPSSLGNLKNL-------------QYLFL---------YQN 270
Query: 411 KVMPTWKGSGREYRSTLGLIK--SLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQN 468
K+ SG S L K SL+LS N L+G +PE ++ L L L+L N+ TG+
Sbjct: 271 KL------SGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKI 324
Query: 469 SPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTG 519
+ L L L L N+ G IP +L + L+V+DLS NNL+G+IP G
Sbjct: 325 PVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG 375
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 86.4 bits (214), Expect = 1e-17
Identities = 67/242 (27%), Positives = 103/242 (42%), Gaps = 39/242 (16%)
Query: 286 SFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGK 345
SF I D + +L N +N +W+ +T + L GK
Sbjct: 36 SFKSSINDPLKYLSN---------WNSSADVCLWQGITCNNSSRVVS--IDLSGKNISGK 84
Query: 346 TPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHH 405
+ + ++Q ++LS N +SG IP + SS + + F G
Sbjct: 85 ISSAIFRLPYIQTINLSNNQLSGPIPD------DIFTTSSSLRYLNLSNNNFTGS----- 133
Query: 406 YSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLT 465
+P R ++ +++L+LS+N L+G +P +I L L+L N L
Sbjct: 134 -------IP---------RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV 177
Query: 466 GQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTGT-QLQS 524
G+ + L SL+FL L+ NQLVG IP L + L + L YNNLSG+IP L S
Sbjct: 178 GKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTS 237
Query: 525 FN 526
N
Sbjct: 238 LN 239
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 83.4 bits (206), Expect = 1e-16
Identities = 74/286 (25%), Positives = 112/286 (39%), Gaps = 88/286 (30%)
Query: 239 FSRSISLCSISG------SKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIP 292
++ S +C G S++ IDLS +SGK+ + + ++L NN SG IP
Sbjct: 51 WNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIP 110
Query: 293 DSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQ 352
D + S R++ L +N F G P
Sbjct: 111 DDIFTT------------------------------SSSLRYLNLSNNNFTGSIPRG--S 138
Query: 353 FAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKV 412
L+ LDLS N +SG+IP +F+++
Sbjct: 139 IPNLETLDLSNNMLSGEIPNDIGSFSSL-------------------------------- 166
Query: 413 MPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKI 472
K L+L N L G +P + +L L L L+ N L GQ ++
Sbjct: 167 ------------------KVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPREL 208
Query: 473 GQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPT 518
GQ+KSL ++ L N L G IP + L+ L+ +DL YNNL+G IP+
Sbjct: 209 GQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS 254
|
Length = 968 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 79.9 bits (197), Expect = 1e-15
Identities = 51/132 (38%), Positives = 74/132 (56%), Gaps = 10/132 (7%)
Query: 416 WKGSGREYRSTLG--LIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIG 473
W G+ ++ ST G I L L + L G +P +I L L ++NLS N + G P +G
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG 463
Query: 474 QLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPT--GTQL---QSFNGS 528
+ SL+ LDLS N G IP SL L+ L +++L+ N+LSG++P G +L SFN
Sbjct: 464 SITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN-- 521
Query: 529 VYAGNPELCGLP 540
+ N LCG+P
Sbjct: 522 -FTDNAGLCGIP 532
|
Length = 623 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 69.9 bits (171), Expect = 2e-12
Identities = 72/231 (31%), Positives = 98/231 (42%), Gaps = 51/231 (22%)
Query: 63 IDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDN--KLAIIQNMS 120
+D+S N LQG I M L+ LSL N+ GG+P FG S L + +N
Sbjct: 433 LDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG-----SKRLENLDLSRNQF 487
Query: 121 SGCLKNSLES------LHLEVNHFTGPIPDLGGFSSMKRLY---LSDNLLNGTINKSIGQ 171
SG + L S L L N +G IPD SS K+L LS N L+G I S +
Sbjct: 488 SGAVPRKLGSLSELMQLKLSENKLSGEIPD--ELSSCKKLVSLDLSHNQLSGQIPASFSE 545
Query: 172 IFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSF 231
+ L LSQN Q+ G++P S ++IS NH G LPS +F
Sbjct: 546 MPVLSQLDLSQN--------QLSGEIPKNLGNV-ESLVQVNISHNHLHGS---LPSTGAF 593
Query: 232 LNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDC--------WWMF 274
L ++ + + +I LC + SG LP C WW +
Sbjct: 594 LAINASAVAGNIDLC------------GGDTTSG-LPPCKRVRKTPSWWFY 631
|
Length = 968 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 1e-07
Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 22/119 (18%)
Query: 54 SNISSNFVS-IDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNK 112
S F+ + L L+G IP+ + +L+ ++L N + G IP G++
Sbjct: 413 STKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSI------- 465
Query: 113 LAIIQNMSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNLLNGTINKSIG 170
SLE L L N F G IP+ LG +S++ L L+ N L+G + ++G
Sbjct: 466 -------------TSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 3e-07
Identities = 35/110 (31%), Positives = 51/110 (46%), Gaps = 22/110 (20%)
Query: 187 DLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLC 246
L N ++G +P+ S+ I++S N G IPP SL
Sbjct: 424 GLDNQGLRGFIPNDISKLRHLQ-SINLSGNSIRGNIPP-------------------SLG 463
Query: 247 SISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMG 296
SI+ L +DLS N +G +P+ SL IL+L NS SGR+P ++G
Sbjct: 464 SITS--LEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 8e-05
Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 128 LESLHLEVNHFTGPIP-DLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLT 186
L+S++L N G IP LG +S++ L LS N NG+I +S+GQ+ L I L+ NSL+
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503
Query: 187 DLANIQIKGKLPDLSSRFGTSNPGI 211
+ G+L +S T N G+
Sbjct: 504 GRVPAALGGRLLHRASFNFTDNAGL 528
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 8e-05
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 252 KLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQ 302
L I+LS N + G +P SL +LDL NSF+G IP+S+G L +++
Sbjct: 443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 5e-04
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 12/89 (13%)
Query: 34 IGKLHSLKTLTSHSCYLR---PLS--NISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLS 88
I KL L+++ +R P S +I+S +DLS+N GSIP+S + L L+
Sbjct: 438 ISKLRHLQSINLSGNSIRGNIPPSLGSITS-LEVLDLSYNSFNGSIPESLGQLTSLRILN 496
Query: 89 LMFNELEGGIPKFFGNML------NLSDN 111
L N L G +P G L N +DN
Sbjct: 497 LNGNSLSGRVPAALGGRLLHRASFNFTDN 525
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 9e-04
Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 36/133 (27%)
Query: 239 FSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFL 298
F + I G + L + L G +P+ L ++L NS G IP S+G +
Sbjct: 411 FDSTKGKWFIDG-----LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSI 465
Query: 299 QNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQV 358
+++ + L N F+G P L Q L++
Sbjct: 466 TSLEV-------------------------------LDLSYNSFNGSIPESLGQLTSLRI 494
Query: 359 LDLSLNNISGKIP 371
L+L+ N++SG++P
Sbjct: 495 LNLNGNSLSGRVP 507
|
Length = 623 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 37.1 bits (87), Expect = 0.001
Identities = 25/60 (41%), Positives = 30/60 (50%)
Query: 453 GLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNL 512
L +L+LS N LT L +L LDLS N L P + S L L +DLS NNL
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.004
Identities = 36/154 (23%), Positives = 54/154 (35%), Gaps = 57/154 (37%)
Query: 344 GKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYV 403
G P + + LQ ++LS N+I G IP + T++
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLE---------------------- 469
Query: 404 HHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNH 463
L+LS N NG++PE + L L LNL+ N
Sbjct: 470 ----------------------------VLDLSYNSFNGSIPESLGQLTSLRILNLNGNS 501
Query: 464 LTGQNSPKIGQL----KSLDFLDLSRNQLVGGIP 493
L+G+ +G S +F D N + GIP
Sbjct: 502 LSGRVPAALGGRLLHRASFNFTD---NAGLCGIP 532
|
Length = 623 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 574 | |||
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 100.0 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 100.0 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 100.0 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.97 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.96 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.96 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.94 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.93 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.9 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.89 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.88 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.86 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.8 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.77 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.69 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.68 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.67 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.56 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.34 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.27 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.24 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.21 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.2 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.14 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.12 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.12 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.11 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.09 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.08 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.07 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.07 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 99.01 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.0 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.94 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.88 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.86 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.56 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.52 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.43 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.42 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.36 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 98.31 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.23 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.15 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 98.12 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 98.1 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 98.09 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.09 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.06 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.04 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 98.03 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 98.03 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.01 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 97.69 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 97.45 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.43 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.39 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 97.24 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.12 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 96.91 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.39 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.29 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 96.17 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.01 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 95.16 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 94.87 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 94.55 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 94.55 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 93.29 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 93.13 | |
| TIGR00864 | 2740 | PCC polycystin cation channel protein. Note: this | 92.84 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 92.62 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 92.5 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 91.89 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 91.89 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 91.54 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 91.54 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 90.06 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 88.08 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 87.67 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 87.16 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 85.61 | |
| smart00365 | 26 | LRR_SD22 Leucine-rich repeat, SDS22-like subfamily | 81.05 |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-53 Score=477.41 Aligned_cols=505 Identities=30% Similarity=0.429 Sum_probs=427.5
Q ss_pred hhhhhcCCCCCcEEECCCCCCCC-CCchhhhcCCCCCCcEEEccCCCCCCC--CCcCCcccEEEccCCcCCCCCCccccC
Q 041121 4 LLMRSLRLHSLRYLNLEENNLAN-CSDWFQVIGKLHSLKTLTSHSCYLRPL--SNISSNFVSIDLSFNQLQGSIPDSSQH 80 (574)
Q Consensus 4 l~~~l~~l~~L~~L~Ls~n~i~~-~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~L~~L~Ls~n~i~~~~~~~~~~ 80 (574)
++..|..+++|++|+|++|.++. +|. ..+..+++|++|++++|++++. ....++|++|++++|.+++..|..++.
T Consensus 85 ~~~~~~~l~~L~~L~Ls~n~~~~~ip~--~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~ 162 (968)
T PLN00113 85 ISSAIFRLPYIQTINLSNNQLSGPIPD--DIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGS 162 (968)
T ss_pred CChHHhCCCCCCEEECCCCccCCcCCh--HHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhc
Confidence 46778999999999999999985 455 1456999999999999998765 334589999999999999899999999
Q ss_pred CCCCCEEEccCCcCccCchhhhhccc-----CCCCCcccc-ccccccccccccCcEEEccCCcccccCCC-CCCCCCCCE
Q 041121 81 MVYLEHLSLMFNELEGGIPKFFGNML-----NLSDNKLAI-IQNMSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKR 153 (574)
Q Consensus 81 l~~L~~L~L~~n~l~~~~~~~~~~l~-----~L~~n~l~~-l~~~~~~~l~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~ 153 (574)
+++|++|++++|.+.+..|..+.++. +|++|.+++ +|. .+..+++ |++|++++|++.+..+. +.++++|++
T Consensus 163 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~-L~~L~L~~n~l~~~~p~~l~~l~~L~~ 240 (968)
T PLN00113 163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPR-ELGQMKS-LKWIYLGYNNLSGEIPYEIGGLTSLNH 240 (968)
T ss_pred CCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCCh-HHcCcCC-ccEEECcCCccCCcCChhHhcCCCCCE
Confidence 99999999999999989999888775 778888887 676 8999998 99999999999987777 999999999
Q ss_pred EEccCcccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCCC---CCCCc
Q 041121 154 LYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPL---PSNSS 230 (574)
Q Consensus 154 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~---~~~L~ 230 (574)
|++++|.+.+..|..|.++++|++|++++|.++ +.+|.. +..+++|+.|++++|.+.+.+|.. +++|+
T Consensus 241 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~--------~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 311 (968)
T PLN00113 241 LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS--------GPIPPS-IFSLQKLISLDLSDNSLSGEIPELVIQLQNLE 311 (968)
T ss_pred EECcCceeccccChhHhCCCCCCEEECcCCeee--------ccCchh-HhhccCcCEEECcCCeeccCCChhHcCCCCCc
Confidence 999999999899999999999999999998765 244544 567889999999999999887764 67899
Q ss_pred EEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCcccccccc--
Q 041121 231 FLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQ-- 308 (574)
Q Consensus 231 ~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~-- 308 (574)
.|++++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++++.++...
T Consensus 312 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~ 391 (968)
T PLN00113 312 ILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNS 391 (968)
T ss_pred EEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCE
Confidence 999999999988888888899999999999999888898899999999999999999988888888777776655322
Q ss_pred -------ccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCc
Q 041121 309 -------QFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMT 381 (574)
Q Consensus 309 -------~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 381 (574)
.+..++++ +.+++++|++.+..|..+..++.|+.|++++|.+++..+..+..+++|+
T Consensus 392 l~~~~p~~~~~~~~L----------------~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 455 (968)
T PLN00113 392 LEGEIPKSLGACRSL----------------RRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQ 455 (968)
T ss_pred ecccCCHHHhCCCCC----------------CEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCc
Confidence 11112222 7788888888888888888888888888888888887777777888888
Q ss_pred cccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCC
Q 041121 382 QERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSR 461 (574)
Q Consensus 382 ~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 461 (574)
.+++++|.+........+...+..+.+.++.+ .+..+..+..+++|+.|++++|.+.+.+|..+..+++|++|+|++
T Consensus 456 ~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l---~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 532 (968)
T PLN00113 456 MLSLARNKFFGGLPDSFGSKRLENLDLSRNQF---SGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSH 532 (968)
T ss_pred EEECcCceeeeecCcccccccceEEECcCCcc---CCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCC
Confidence 88888877643222222334455555555433 344556677899999999999999999999999999999999999
Q ss_pred CcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcccCCCcchhcccCcccccCCCCCCCCC
Q 041121 462 NHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTGTQLQSFNGSVYAGNPELCGLP 540 (574)
Q Consensus 462 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~l~~Np~~c~~~ 540 (574)
|.+++.+|..|.++++|++|++++|++++.+|..+..+++|+.+++++|++.|.+|...++..+....+.|||.+|+.+
T Consensus 533 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 533 NQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred CcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 9999999999999999999999999999999999999999999999999999999999888888889999999999855
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-49 Score=447.78 Aligned_cols=498 Identities=31% Similarity=0.367 Sum_probs=426.7
Q ss_pred CCCCcEEECCCCCCCCC-CchhhhcCCCCCCcEEEccCCCCCCC-----CCcCCcccEEEccCCcCCCCCCccccCCCCC
Q 041121 11 LHSLRYLNLEENNLANC-SDWFQVIGKLHSLKTLTSHSCYLRPL-----SNISSNFVSIDLSFNQLQGSIPDSSQHMVYL 84 (574)
Q Consensus 11 l~~L~~L~Ls~n~i~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L 84 (574)
..+++.|++++|.++.. +. +|..+++|++|++++|++++. .....+|++|++++|++++.+|. ..+++|
T Consensus 68 ~~~v~~L~L~~~~i~~~~~~---~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L 142 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKISS---AIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNL 142 (968)
T ss_pred CCcEEEEEecCCCccccCCh---HHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCC
Confidence 45799999999999887 55 899999999999999998743 22348999999999999887775 568999
Q ss_pred CEEEccCCcCccCchhhhhccc-----CCCCCcccc-ccccccccccccCcEEEccCCcccccCCC-CCCCCCCCEEEcc
Q 041121 85 EHLSLMFNELEGGIPKFFGNML-----NLSDNKLAI-IQNMSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLS 157 (574)
Q Consensus 85 ~~L~L~~n~l~~~~~~~~~~l~-----~L~~n~l~~-l~~~~~~~l~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~L~ 157 (574)
++|++++|.+.+..|..++.+. ++++|.+.+ +|. .+.++++ |++|++++|.+.+..+. +..+++|++|+++
T Consensus 143 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~-L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 220 (968)
T PLN00113 143 ETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN-SLTNLTS-LEFLTLASNQLVGQIPRELGQMKSLKWIYLG 220 (968)
T ss_pred CEEECcCCcccccCChHHhcCCCCCEEECccCcccccCCh-hhhhCcC-CCeeeccCCCCcCcCChHHcCcCCccEEECc
Confidence 9999999999988998888775 778898876 777 8999999 99999999999988777 9999999999999
Q ss_pred CcccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCCC---CCCCcEEEc
Q 041121 158 DNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPL---PSNSSFLNL 234 (574)
Q Consensus 158 ~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~L 234 (574)
+|.+.+..|..|.++++|++|++++|.++ +.+|.. +..+++|+.|++++|.+.+..|.. +.+|++|++
T Consensus 221 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~--------~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 291 (968)
T PLN00113 221 YNNLSGEIPYEIGGLTSLNHLDLVYNNLT--------GPIPSS-LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDL 291 (968)
T ss_pred CCccCCcCChhHhcCCCCCEEECcCceec--------cccChh-HhCCCCCCEEECcCCeeeccCchhHhhccCcCEEEC
Confidence 99999999999999999999999998775 345554 788999999999999999887765 689999999
Q ss_pred CCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCccccccccccccCc
Q 041121 235 SKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRT 314 (574)
Q Consensus 235 ~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~ 314 (574)
++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.++...+
T Consensus 292 s~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n----- 366 (968)
T PLN00113 292 SDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN----- 366 (968)
T ss_pred cCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCC-----
Confidence 999999888888889999999999999999999999999999999999999999999998888888876663321
Q ss_pred cceeeeccccccccccc-----cceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCc
Q 041121 315 VFIVWELLTTQTFESWE-----ERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPT 389 (574)
Q Consensus 315 ~l~~l~~~~~~~~~~~~-----~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~ 389 (574)
...+.+|.+. .+.+++++|++.+..|..+..+++|+.|++++|++++..|..|..++.|+.+++++|.
T Consensus 367 -------~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 439 (968)
T PLN00113 367 -------NLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN 439 (968)
T ss_pred -------eeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCc
Confidence 1111122111 1788999999999999999999999999999999998899999999999999999988
Q ss_pred cccc-cccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccC
Q 041121 390 IKVY-YYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQN 468 (574)
Q Consensus 390 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 468 (574)
+... +..+...+.+..+.+.++.... ..+..+ ..++|+.|++++|++++..|..|..+++|++|+|++|++.+.+
T Consensus 440 l~~~~~~~~~~l~~L~~L~L~~n~~~~---~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 515 (968)
T PLN00113 440 LQGRINSRKWDMPSLQMLSLARNKFFG---GLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEI 515 (968)
T ss_pred ccCccChhhccCCCCcEEECcCceeee---ecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeC
Confidence 7542 2233445566666666655432 122222 4578999999999999999999999999999999999999999
Q ss_pred CccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcccCCCc-chhcccCcccccCCCCCCCCC
Q 041121 469 SPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTG-TQLQSFNGSVYAGNPELCGLP 540 (574)
Q Consensus 469 ~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~l~~~~l~~Np~~c~~~ 540 (574)
|..+.++++|++|++++|++++.+|..|..+++|+.|+|++|++++.+|.. ..+..++.+++++|++.+..|
T Consensus 516 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 516 PDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred ChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence 999999999999999999999999999999999999999999999999986 457889999999999887665
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-43 Score=337.93 Aligned_cols=410 Identities=22% Similarity=0.214 Sum_probs=273.3
Q ss_pred cEEEccCCCCCCC------CCcCCcccEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccCchhhhhcccCCCCCccc
Q 041121 41 KTLTSHSCYLRPL------SNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLA 114 (574)
Q Consensus 41 ~~L~l~~n~l~~~------~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~ 114 (574)
+.|+++++.+..+ ..+++.-++|++++|.+....+..|.++++|+.+++..|.++ .+|.
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~-------------- 119 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPR-------------- 119 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccc--------------
Confidence 4577777777765 223356677888888888777777888888888888888877 5553
Q ss_pred cccccccccccccCcEEEccCCcccccCCC-CCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCccc
Q 041121 115 IIQNMSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQI 193 (574)
Q Consensus 115 ~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 193 (574)
|+.....|+.|+|.+|.|+.+... +..++.|+.|||+.|.|+.+.-..|..=.++++|+|++|+|+++....|
T Consensus 120 ------f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F 193 (873)
T KOG4194|consen 120 ------FGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHF 193 (873)
T ss_pred ------ccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccc
Confidence 222222266666666666655544 6666666666666666665555556655666666666666665554443
Q ss_pred cccCCchhhcCCCCCCeEeccCCcccCCCCCC---CCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcc
Q 041121 194 KGKLPDLSSRFGTSNPGIDISSNHFEGPIPPL---PSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDC 270 (574)
Q Consensus 194 ~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 270 (574)
. .+.+|..|.++.|+++..++.. ++.|+.|+|..|+|..+....|.++++|+.|.|..|.|......+
T Consensus 194 ~---------~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~ 264 (873)
T KOG4194|consen 194 D---------SLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGA 264 (873)
T ss_pred c---------ccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcc
Confidence 2 2234444555555554433322 455566666666666555556666666666666666666555566
Q ss_pred hhcCCCCcEEEccCcccccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhh
Q 041121 271 WWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQL 350 (574)
Q Consensus 271 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~ 350 (574)
|.++.++++|+|+.|++.....+++.++.+| +.++|++|.|..+-+..+
T Consensus 265 Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L-------------------------------~~L~lS~NaI~rih~d~W 313 (873)
T KOG4194|consen 265 FYGLEKMEHLNLETNRLQAVNEGWLFGLTSL-------------------------------EQLDLSYNAIQRIHIDSW 313 (873)
T ss_pred eeeecccceeecccchhhhhhcccccccchh-------------------------------hhhccchhhhheeecchh
Confidence 6666666666666666665555566666666 556666666666666666
Q ss_pred cCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcc
Q 041121 351 CQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLI 430 (574)
Q Consensus 351 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 430 (574)
..+++|++|+|++|+|+...+..|. .+..|
T Consensus 314 sftqkL~~LdLs~N~i~~l~~~sf~--------------------------------------------------~L~~L 343 (873)
T KOG4194|consen 314 SFTQKLKELDLSSNRITRLDEGSFR--------------------------------------------------VLSQL 343 (873)
T ss_pred hhcccceeEeccccccccCChhHHH--------------------------------------------------HHHHh
Confidence 6666666666666666644444443 34556
Q ss_pred cEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCC---ccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEec
Q 041121 431 KSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNS---PKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDL 507 (574)
Q Consensus 431 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~L 507 (574)
++|+|++|.+...-..+|.++++|++|||++|.++..+. ..|.++++|+.|++.+|+|..+.-.+|.++..|+.|||
T Consensus 344 e~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL 423 (873)
T KOG4194|consen 344 EELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDL 423 (873)
T ss_pred hhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecC
Confidence 888888898887777788889999999999998876543 35778889999999999998777778999999999999
Q ss_pred cCCcCcccCCCcchhcccCcccccCCCCCCCCCCC----------------CCCCCCCCCCCCCCCCCCC
Q 041121 508 SYNNLSGKIPTGTQLQSFNGSVYAGNPELCGLPLP----------------NKCRDEESAPGPGMTEGRD 561 (574)
Q Consensus 508 s~N~l~~~~p~~~~~~~l~~~~l~~Np~~c~~~l~----------------~~c~~~~~~~~~~~~~~~~ 561 (574)
.+|.|...-|..+.-..++++.+..-.++|||++. ..|+.|++-..-.+...+.
T Consensus 424 ~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~Wl~qWl~~~~lq~sv~a~CayPe~Lad~~i~svd~ 493 (873)
T KOG4194|consen 424 GDNAIASIQPNAFEPMELKELVMNSSSFLCDCQLKWLAQWLYRRKLQSSVIAKCAYPEPLADQSIVSVDT 493 (873)
T ss_pred CCCcceeecccccccchhhhhhhcccceEEeccHHHHHHHHHhcccccceeeeccCCcccccceeEeech
Confidence 99998855566655447888888777789999862 2587777755444443333
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-42 Score=330.27 Aligned_cols=357 Identities=21% Similarity=0.216 Sum_probs=229.0
Q ss_pred EEEccCCCCCCC----CCcCCcccEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccCchhhhhccc-----CCCCCc
Q 041121 42 TLTSHSCYLRPL----SNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNML-----NLSDNK 112 (574)
Q Consensus 42 ~L~l~~n~l~~~----~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----~L~~n~ 112 (574)
.|++++|++.++ +.-.++|+++.+.+|.++ .+|.......+|+.|+|.+|.|+....+.+..+. +|+.|.
T Consensus 82 ~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~ 160 (873)
T KOG4194|consen 82 TLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNL 160 (873)
T ss_pred eeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhch
Confidence 355555555555 122255555555555555 4454444445566666666655544444333221 444444
Q ss_pred cccccccccccccccCcEEEccCCcccccCCC-CCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCc
Q 041121 113 LAIIQNMSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANI 191 (574)
Q Consensus 113 l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~ 191 (574)
|++||...|..=.+ +++|+|++|+|+....+ |.++.+|..|.|+.|+|+...+..|+++++|+.|+|..|+|..+...
T Consensus 161 is~i~~~sfp~~~n-i~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~l 239 (873)
T KOG4194|consen 161 ISEIPKPSFPAKVN-IKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGL 239 (873)
T ss_pred hhcccCCCCCCCCC-ceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhh
Confidence 44444435555455 77888888888766666 77777888888888888766667777788888888888777654433
Q ss_pred cccccCCchhhcCCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcch
Q 041121 192 QIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCW 271 (574)
Q Consensus 192 ~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 271 (574)
.|.| +++|+.|.|..|.|.......|..+.++++|+|+.|+++..-..++
T Consensus 240 tFqg------------------------------L~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~l 289 (873)
T KOG4194|consen 240 TFQG------------------------------LPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWL 289 (873)
T ss_pred hhcC------------------------------chhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccc
Confidence 3322 4566667777777777777777777777777777777776666677
Q ss_pred hcCCCCcEEEccCcccccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhc
Q 041121 272 WMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLC 351 (574)
Q Consensus 272 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~ 351 (574)
.+++.|+.|++|+|.|...-++.+...++| ++++|++|.+....+..|.
T Consensus 290 fgLt~L~~L~lS~NaI~rih~d~WsftqkL-------------------------------~~LdLs~N~i~~l~~~sf~ 338 (873)
T KOG4194|consen 290 FGLTSLEQLDLSYNAIQRIHIDSWSFTQKL-------------------------------KELDLSSNRITRLDEGSFR 338 (873)
T ss_pred cccchhhhhccchhhhheeecchhhhcccc-------------------------------eeEeccccccccCChhHHH
Confidence 777777777777777777777777777777 7777777777777777777
Q ss_pred CCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCccc
Q 041121 352 QFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIK 431 (574)
Q Consensus 352 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 431 (574)
.+..|++|+|+.|.+.......|.++.+|++|+++.|.+.-.- ......|.++++|+
T Consensus 339 ~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~I-----------------------EDaa~~f~gl~~Lr 395 (873)
T KOG4194|consen 339 VLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCI-----------------------EDAAVAFNGLPSLR 395 (873)
T ss_pred HHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEE-----------------------ecchhhhccchhhh
Confidence 7777777777777777555556666666655555554443110 01122344566667
Q ss_pred EEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCC
Q 041121 432 SLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSR 485 (574)
Q Consensus 432 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 485 (574)
.|+|.+|++..+...+|.++++|++|+|.+|.|..+-+.+|..+ .|++|.+..
T Consensus 396 kL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 396 KLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred heeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 77777777765555667777777777777777766667777666 666666543
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-40 Score=304.38 Aligned_cols=470 Identities=23% Similarity=0.257 Sum_probs=328.6
Q ss_pred CCCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCCCCc---CCcccEEEccCCcCCCCCCccccCCCCCCEEE
Q 041121 12 HSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNI---SSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLS 88 (574)
Q Consensus 12 ~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 88 (574)
.-|+.+++++|.++.+.. .+.++..|.+|+.++|++...+.. ...++.++.++|+++ .+|+.+..++.|+.++
T Consensus 45 v~l~~lils~N~l~~l~~---dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~ 120 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLRE---DLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLD 120 (565)
T ss_pred cchhhhhhccCchhhccH---hhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhh
Confidence 356778888888887744 578888888888888888776222 257778888888887 7788888888888888
Q ss_pred ccCCcCccCchhhhhccc-----CCCCCccccccccccccccccCcEEEccCCcccccCCCCCCCCCCCEEEccCccccc
Q 041121 89 LMFNELEGGIPKFFGNML-----NLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNG 163 (574)
Q Consensus 89 L~~n~l~~~~~~~~~~l~-----~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~L~~n~i~~ 163 (574)
+++|++. ..|+.++.+. +..+|+++.+|. ++..+.+ +..+++.+|++....+....++.|++||...|.++
T Consensus 121 ~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~slp~-~~~~~~~-l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~- 196 (565)
T KOG0472|consen 121 CSSNELK-ELPDSIGRLLDLEDLDATNNQISSLPE-DMVNLSK-LSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE- 196 (565)
T ss_pred cccccee-ecCchHHHHhhhhhhhccccccccCch-HHHHHHH-HHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-
Confidence 8888887 6666777665 456788888888 7777777 88888888888877776334888888888888887
Q ss_pred ccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCCC---CCCCcEEEcCCCccc
Q 041121 164 TINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPL---PSNSSFLNLSKNRFS 240 (574)
Q Consensus 164 ~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~L~~n~i~ 240 (574)
.+|..++.+.+|+.|++.+|+|..++ . |..|..|.++.++.|++.-..... +.++..|||+.|+++
T Consensus 197 tlP~~lg~l~~L~~LyL~~Nki~~lP---------e--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk 265 (565)
T KOG0472|consen 197 TLPPELGGLESLELLYLRRNKIRFLP---------E--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK 265 (565)
T ss_pred cCChhhcchhhhHHHHhhhcccccCC---------C--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc
Confidence 77778888888888888888877443 1 566777788888888777433322 567777888888888
Q ss_pred ccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCccccc--ccCccccccccccccCcccee
Q 041121 241 RSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGF--LQNIQTQFTQQQFNRRTVFIV 318 (574)
Q Consensus 241 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~--l~~L~~l~~~~~~~~~~~l~~ 318 (574)
+++. ....+++|++||+++|.|+ ..|..++++ .|+.|-+.+|.+...-.+.+.. -.-|+++.....-.+.++-+.
T Consensus 266 e~Pd-e~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~ 342 (565)
T KOG0472|consen 266 EVPD-EICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEG 342 (565)
T ss_pred cCch-HHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcc
Confidence 6654 4446678888888888888 556677787 8888888888876321111100 011111111000000000000
Q ss_pred eecccccccccccc---------ceEEecCceeccCCChhhcCC---CCCCEEEccCCcccccCCccccccccCcc-ccC
Q 041121 319 WELLTTQTFESWEE---------RFVRLKSNKFHGKTPFQLCQF---AFLQVLDLSLNNISGKIPKCFNNFTAMTQ-ERS 385 (574)
Q Consensus 319 l~~~~~~~~~~~~~---------~~l~L~~n~~~~~~~~~~~~~---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~-l~l 385 (574)
-. ...++.|.+.. +.+++++-+++. +|...+.- .-...++++.|++. .+|..+..+..+.. +.+
T Consensus 343 ~~-e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~-VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~l 419 (565)
T KOG0472|consen 343 GT-ETAMTLPSESFPDIYAIITTKILDVSDKQLTL-VPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVL 419 (565)
T ss_pred cc-cccCCCCCCcccchhhhhhhhhhccccccccc-CCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHh
Confidence 00 11111122211 667777777764 34333222 23677788888887 66666555554433 224
Q ss_pred CCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCc
Q 041121 386 SDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLT 465 (574)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 465 (574)
++|.+.. .+..++.++.|+.|+|++|.+. .+|..++.+..|++|+++.|++.
T Consensus 420 snn~isf---------------------------v~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr 471 (565)
T KOG0472|consen 420 SNNKISF---------------------------VPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR 471 (565)
T ss_pred hcCcccc---------------------------chHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc
Confidence 4444332 2234467788899999999887 88888999999999999999998
Q ss_pred ccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcccCCCc-chhcccCcccccCCCCC
Q 041121 466 GQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTG-TQLQSFNGSVYAGNPEL 536 (574)
Q Consensus 466 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~l~~~~l~~Np~~ 536 (574)
..|..+..+..++.+-.++|++..+.++.+.+|.+|.+|||.+|.+. .+|+. ..+++++.+.+.|||+.
T Consensus 472 -~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 472 -MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred -cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 78888888888899989999999888888999999999999999998 66665 78899999999999977
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-38 Score=289.69 Aligned_cols=430 Identities=24% Similarity=0.308 Sum_probs=325.5
Q ss_pred hhhhhhcCCCCCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCCC---CcCCcccEEEccCCcCCCCCCcccc
Q 041121 3 KLLMRSLRLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLS---NISSNFVSIDLSFNQLQGSIPDSSQ 79 (574)
Q Consensus 3 ~l~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~L~~L~Ls~n~i~~~~~~~~~ 79 (574)
.+.+.+.++..|.+|++++|+++..|. +++.+..++.++.++|++..++ .-..+++.++.++|.+. ..++.++
T Consensus 59 ~l~~dl~nL~~l~vl~~~~n~l~~lp~---aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~ 134 (565)
T KOG0472|consen 59 VLREDLKNLACLTVLNVHDNKLSQLPA---AIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELK-ELPDSIG 134 (565)
T ss_pred hccHhhhcccceeEEEeccchhhhCCH---HHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccccee-ecCchHH
Confidence 345678899999999999999999988 8999999999999999998872 22368899999999998 6778888
Q ss_pred CCCCCCEEEccCCcCccCchhhhhccc-----CCCCCccccccccccccccccCcEEEccCCcccccCCCCCCCCCCCEE
Q 041121 80 HMVYLEHLSLMFNELEGGIPKFFGNML-----NLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRL 154 (574)
Q Consensus 80 ~l~~L~~L~L~~n~l~~~~~~~~~~l~-----~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L 154 (574)
.+-.|..++..+|+++ ..|.++..+. ++.+|+++.+|+ ..-+|.. |++||...|-+...+++++++.+|+.|
T Consensus 135 ~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~-~~i~m~~-L~~ld~~~N~L~tlP~~lg~l~~L~~L 211 (565)
T KOG0472|consen 135 RLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPE-NHIAMKR-LKHLDCNSNLLETLPPELGGLESLELL 211 (565)
T ss_pred HHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCH-HHHHHHH-HHhcccchhhhhcCChhhcchhhhHHH
Confidence 9999999999999998 6777776654 778888888887 4444887 888988888888777778888888888
Q ss_pred EccCcccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCCC--CCCCcEE
Q 041121 155 YLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPL--PSNSSFL 232 (574)
Q Consensus 155 ~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L 232 (574)
++.+|+|. ..| .|.+|..|++|.++.|+|+. +|+...+.++++..||+.+|+++..+... +.+|++|
T Consensus 212 yL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~---------lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rL 280 (565)
T KOG0472|consen 212 YLRRNKIR-FLP-EFPGCSLLKELHVGENQIEM---------LPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERL 280 (565)
T ss_pred Hhhhcccc-cCC-CCCccHHHHHHHhcccHHHh---------hHHHHhcccccceeeeccccccccCchHHHHhhhhhhh
Confidence 88888887 555 78888888888888888774 44444567778888888888888654443 6778888
Q ss_pred EcCCCcccccccccccCCCCccEEECCCCCCCC-------------------------------------C-CCcc---h
Q 041121 233 NLSKNRFSRSISLCSISGSKLTYIDLSSNLLSG-------------------------------------K-LPDC---W 271 (574)
Q Consensus 233 ~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~-------------------------------------~-~~~~---~ 271 (574)
|+++|.|++.+. .++++ .|+.|.+.+|.+.. . .+.. .
T Consensus 281 DlSNN~is~Lp~-sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~ 358 (565)
T KOG0472|consen 281 DLSNNDISSLPY-SLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDI 358 (565)
T ss_pred cccCCccccCCc-ccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccch
Confidence 888888886654 44555 67777777775420 0 0111 1
Q ss_pred hcCCCCcEEEccCcccccCCCc-ccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhh
Q 041121 272 WMFDSLVILDLGNNSFSGRIPD-SMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQL 350 (574)
Q Consensus 272 ~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~ 350 (574)
..+.+.++|++++-+++ .+|+ .|..-++=-. ..++++.|++.. +|..+
T Consensus 359 ~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~V-----------------------------t~VnfskNqL~e-lPk~L 407 (565)
T KOG0472|consen 359 YAIITTKILDVSDKQLT-LVPDEVFEAAKSEIV-----------------------------TSVNFSKNQLCE-LPKRL 407 (565)
T ss_pred hhhhhhhhhcccccccc-cCCHHHHHHhhhcce-----------------------------EEEecccchHhh-hhhhh
Confidence 23557888888888888 4444 3332221000 567777777763 44444
Q ss_pred cCCCC-CCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCc
Q 041121 351 CQFAF-LQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGL 429 (574)
Q Consensus 351 ~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 429 (574)
..+.. .+.+.+++|.+. .+|..+..++++..+++++|.+...+.. +.++..
T Consensus 408 ~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln~LP~e---------------------------~~~lv~ 459 (565)
T KOG0472|consen 408 VELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLNDLPEE---------------------------MGSLVR 459 (565)
T ss_pred HHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhhhcchh---------------------------hhhhhh
Confidence 33333 234555556555 6666677777777777777766533222 234555
Q ss_pred ccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccC
Q 041121 430 IKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSY 509 (574)
Q Consensus 430 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~ 509 (574)
|+.|+++.|++. ..|..+..+..|+.+-.++|+++.+.++.+.+|.+|.+||+.+|.+. .+|..+++|++|+.|+++|
T Consensus 460 Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~g 537 (565)
T KOG0472|consen 460 LQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDG 537 (565)
T ss_pred hheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecC
Confidence 899999999998 99999999999999999999999888888999999999999999999 6778899999999999999
Q ss_pred CcCc
Q 041121 510 NNLS 513 (574)
Q Consensus 510 N~l~ 513 (574)
|.|.
T Consensus 538 Npfr 541 (565)
T KOG0472|consen 538 NPFR 541 (565)
T ss_pred CccC
Confidence 9997
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=298.96 Aligned_cols=436 Identities=26% Similarity=0.309 Sum_probs=294.2
Q ss_pred hhcCCCCCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCCCC---cCCcccEEEccCCcCCCCCCccccCCCC
Q 041121 7 RSLRLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSN---ISSNFVSIDLSFNQLQGSIPDSSQHMVY 83 (574)
Q Consensus 7 ~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~L~~L~Ls~n~i~~~~~~~~~~l~~ 83 (574)
++.+.-.|++||+++|.+...|. .+..+++|+.|++++|.|..++. -..+|+++.|.+|.+. ..|..+..+++
T Consensus 40 ~~~~~v~L~~l~lsnn~~~~fp~---~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lkn 115 (1081)
T KOG0618|consen 40 FVEKRVKLKSLDLSNNQISSFPI---QITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKN 115 (1081)
T ss_pred HhhheeeeEEeeccccccccCCc---hhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhh-cCchhHHhhhc
Confidence 44444558888888888888877 78888888888888888887732 1268888888888887 67888888888
Q ss_pred CCEEEccCCcCccCchhhhhccc-----CCCCC-ccccccccccccccccCcEEEccCCcccccCCC-CCCCCCCCEEEc
Q 041121 84 LEHLSLMFNELEGGIPKFFGNML-----NLSDN-KLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYL 156 (574)
Q Consensus 84 L~~L~L~~n~l~~~~~~~~~~l~-----~L~~n-~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~L 156 (574)
|++||+++|.+. ..|..+..+. ..++| ++..++. . . ++.+++..|.+.+.+.. ...++. .|+|
T Consensus 116 l~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~-----~-~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldL 185 (1081)
T KOG0618|consen 116 LQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQ-----T-S-IKKLDLRLNVLGGSFLIDIYNLTH--QLDL 185 (1081)
T ss_pred ccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhcc-----c-c-chhhhhhhhhcccchhcchhhhhe--eeec
Confidence 888888888887 6666655543 45555 2222322 1 1 56666666666654443 444444 5778
Q ss_pred cCcccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCCC-CCCCcEEEcC
Q 041121 157 SDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPL-PSNSSFLNLS 235 (574)
Q Consensus 157 ~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~L~ 235 (574)
++|.+. .-.+..+++|+.+..+.|++..+. ...++++.|+.+.|.++...+.. +.++++++++
T Consensus 186 r~N~~~---~~dls~~~~l~~l~c~rn~ls~l~-------------~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis 249 (1081)
T KOG0618|consen 186 RYNEME---VLDLSNLANLEVLHCERNQLSELE-------------ISGPSLTALYADHNPLTTLDVHPVPLNLQYLDIS 249 (1081)
T ss_pred ccchhh---hhhhhhccchhhhhhhhcccceEE-------------ecCcchheeeeccCcceeeccccccccceeeecc
Confidence 777775 234566777777777777776442 22346677777777777544443 6677777777
Q ss_pred CCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCccccccccccccCcc
Q 041121 236 KNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTV 315 (574)
Q Consensus 236 ~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~ 315 (574)
.|++++++ .+...+++|+.+...+|.++ ..|.......+|+.|++.+|.+. -+|.....+.+|
T Consensus 250 ~n~l~~lp-~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL-------------- 312 (1081)
T KOG0618|consen 250 HNNLSNLP-EWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSL-------------- 312 (1081)
T ss_pred hhhhhcch-HHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCccccccee--------------
Confidence 77777666 55666777777777777775 55666666677777777777776 445555555555
Q ss_pred ceeeeccccccccccccceEEecCceeccCCChhhcCCCC-CCEEEccCCcccccCC-ccccccccCccccCCCCccccc
Q 041121 316 FIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAF-LQVLDLSLNNISGKIP-KCFNNFTAMTQERSSDPTIKVY 393 (574)
Q Consensus 316 l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~-L~~L~L~~n~l~~~~~-~~~~~l~~L~~l~l~~~~~~~~ 393 (574)
++|+|..|++....+..+..... ++.|+.+.|++. ..| -.=.....|+.+++.+|.+.
T Consensus 313 -----------------~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Lt-- 372 (1081)
T KOG0618|consen 313 -----------------RTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLT-- 372 (1081)
T ss_pred -----------------eeeeehhccccccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCccc--
Confidence 66666666666444333333332 555555666555 222 11122344555555555542
Q ss_pred cccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCcccc
Q 041121 394 YYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIG 473 (574)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 473 (574)
+.+...+.+++.|+.|+|++|++.......+.++..|++|+||||+++ .+|+.+.
T Consensus 373 ------------------------d~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva 427 (1081)
T KOG0618|consen 373 ------------------------DSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVA 427 (1081)
T ss_pred ------------------------ccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHH
Confidence 333444556778888999999887555567788888889999999888 5668888
Q ss_pred CCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCc-ccCCCcchhcccCcccccCCCCC
Q 041121 474 QLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLS-GKIPTGTQLQSFNGSVYAGNPEL 536 (574)
Q Consensus 474 ~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~-~~~p~~~~~~~l~~~~l~~Np~~ 536 (574)
.++.|++|....|++. ..| .+..++.|+.+|+|.|+++ ..+|.....+.++.++++||+|.
T Consensus 428 ~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 428 NLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred hhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCccc
Confidence 8888888888888888 455 6788888888999988888 44555544578888888888863
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-33 Score=274.95 Aligned_cols=364 Identities=23% Similarity=0.264 Sum_probs=241.4
Q ss_pred cCCCCCcEEECCCCCCCCC--CchhhhcCCCCCCcEEEccCCCCCCCCCcCCcccEEEccCCcCCCCCCccccCCCCCCE
Q 041121 9 LRLHSLRYLNLEENNLANC--SDWFQVIGKLHSLKTLTSHSCYLRPLSNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEH 86 (574)
Q Consensus 9 ~~l~~L~~L~Ls~n~i~~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 86 (574)
+-++-++-.|+++|.++.. |. ....+.+++.|.|.+.++. .+|+.++++.+|++
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~---~v~qMt~~~WLkLnrt~L~---------------------~vPeEL~~lqkLEH 59 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPH---DVEQMTQMTWLKLNRTKLE---------------------QVPEELSRLQKLEH 59 (1255)
T ss_pred cccceeecccccCCcCCCCcCch---hHHHhhheeEEEechhhhh---------------------hChHHHHHHhhhhh
Confidence 3455667777777777644 55 5666777777766665554 67888888888999
Q ss_pred EEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCccc--ccCCCCCCCCCCCEEEccCcccccc
Q 041121 87 LSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFT--GPIPDLGGFSSMKRLYLSDNLLNGT 164 (574)
Q Consensus 87 L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~--~~~~~l~~l~~L~~L~L~~n~i~~~ 164 (574)
|.+++|++... -. .+..+|. |+.+.+..|++. ++++++..+..|+.|||++|++. .
T Consensus 60 Ls~~HN~L~~v-hG-------------------ELs~Lp~-LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-E 117 (1255)
T KOG0444|consen 60 LSMAHNQLISV-HG-------------------ELSDLPR-LRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-E 117 (1255)
T ss_pred hhhhhhhhHhh-hh-------------------hhccchh-hHHHhhhccccccCCCCchhcccccceeeecchhhhh-h
Confidence 88888887732 11 4555676 888888888775 45555778899999999999998 7
Q ss_pred cchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCCC--CCCCcEEEcCCCccccc
Q 041121 165 INKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPL--PSNSSFLNLSKNRFSRS 242 (574)
Q Consensus 165 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~L~~n~i~~~ 242 (574)
.|..+..-.++-+|+||+|+|..|+ ...+.+++-|-.||+++|++...+|.. +..|+.|.|++|.+...
T Consensus 118 vP~~LE~AKn~iVLNLS~N~IetIP---------n~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hf 188 (1255)
T KOG0444|consen 118 VPTNLEYAKNSIVLNLSYNNIETIP---------NSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHF 188 (1255)
T ss_pred cchhhhhhcCcEEEEcccCccccCC---------chHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHH
Confidence 8888888889999999999888544 333566666777778888777666654 66777777777766654
Q ss_pred ccccccCCCCccEEECCCCCCC-CCCCcchhcCCCCcEEEccCcccccCCCcccccccCccccccccccccCccceeeec
Q 041121 243 ISLCSISGSKLTYIDLSSNLLS-GKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWEL 321 (574)
Q Consensus 243 ~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~ 321 (574)
.-..+-.+.+|+.|.+++.+=+ .-+|..+.++.+|..+|+|.|.+. .+|+++..+++|
T Consensus 189 QLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~L-------------------- 247 (1255)
T KOG0444|consen 189 QLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNL-------------------- 247 (1255)
T ss_pred HHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhh--------------------
Confidence 4444445556666666665432 235666777777777777777776 566666666666
Q ss_pred cccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCC
Q 041121 322 LTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPP 401 (574)
Q Consensus 322 ~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~ 401 (574)
+.++|++|+|+. +......+.+|++|+||.|+++ ..|.++..++.|
T Consensus 248 -----------rrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL--------------------- 293 (1255)
T KOG0444|consen 248 -----------RRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKL--------------------- 293 (1255)
T ss_pred -----------heeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhHHH---------------------
Confidence 556666666653 2223334455666666666665 555555554444
Q ss_pred ccccccccCcccccccCCCcccccccCcccEEEccCCcCC-CCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCE
Q 041121 402 YVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLN-GAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDF 480 (574)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 480 (574)
+.|++.+|+++ .-+|..++.+.+|+++..++|.+. ..|+.+..++.|+.
T Consensus 294 -----------------------------~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~k 343 (1255)
T KOG0444|consen 294 -----------------------------TKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQK 343 (1255)
T ss_pred -----------------------------HHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHH
Confidence 33444444443 235566666666666666666665 66666666666666
Q ss_pred EeCCCCcccccCCCCccCCCCCCEEeccCCcCc
Q 041121 481 LDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLS 513 (574)
Q Consensus 481 L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~ 513 (574)
|.|++|++- ..|+++.-++.|+.||+..|.=-
T Consensus 344 L~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 344 LKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred hccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 666666665 56666666666666666666543
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.1e-32 Score=262.99 Aligned_cols=366 Identities=23% Similarity=0.290 Sum_probs=278.2
Q ss_pred hhhhhhcCCCCCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCCCCc---CCcccEEEccCCcCCC-CCCccc
Q 041121 3 KLLMRSLRLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNI---SSNFVSIDLSFNQLQG-SIPDSS 78 (574)
Q Consensus 3 ~l~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~L~~L~Ls~n~i~~-~~~~~~ 78 (574)
..|..+..+++++.|.|...++..+|. .++.|.+|++|.+++|++..+.+- .+.|+.+++..|+++. -+|..+
T Consensus 23 ~FP~~v~qMt~~~WLkLnrt~L~~vPe---EL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~di 99 (1255)
T KOG0444|consen 23 RFPHDVEQMTQMTWLKLNRTKLEQVPE---ELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDI 99 (1255)
T ss_pred cCchhHHHhhheeEEEechhhhhhChH---HHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchh
Confidence 367888999999999999999999988 899999999999999999988332 3889999999999974 378888
Q ss_pred cCCCCCCEEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccccCCC-CCCCCCCCEEEcc
Q 041121 79 QHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLS 157 (574)
Q Consensus 79 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~L~ 157 (574)
.++..|++||||+|+++ ..|.. +..-.+ +-.|+|++|+|..++.. |.+++.|-.|||+
T Consensus 100 F~l~dLt~lDLShNqL~-EvP~~-------------------LE~AKn-~iVLNLS~N~IetIPn~lfinLtDLLfLDLS 158 (1255)
T KOG0444|consen 100 FRLKDLTILDLSHNQLR-EVPTN-------------------LEYAKN-SIVLNLSYNNIETIPNSLFINLTDLLFLDLS 158 (1255)
T ss_pred cccccceeeecchhhhh-hcchh-------------------hhhhcC-cEEEEcccCccccCCchHHHhhHhHhhhccc
Confidence 99999999999999998 67764 334455 78889999999877666 8889999999999
Q ss_pred CcccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCC
Q 041121 158 DNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKN 237 (574)
Q Consensus 158 ~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n 237 (574)
+|++. ..|.....+..|++|.|++|++...-- ..+|. +++|+.|.+++.+-+-
T Consensus 159 ~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQL----rQLPs-----mtsL~vLhms~TqRTl----------------- 211 (1255)
T KOG0444|consen 159 NNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQL----RQLPS-----MTSLSVLHMSNTQRTL----------------- 211 (1255)
T ss_pred cchhh-hcCHHHHHHhhhhhhhcCCChhhHHHH----hcCcc-----chhhhhhhcccccchh-----------------
Confidence 99997 677778888899999999988763321 12222 3344444444443221
Q ss_pred cccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCccccccccccccCccce
Q 041121 238 RFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFI 317 (574)
Q Consensus 238 ~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~ 317 (574)
...|.++..+.+|..+|+++|.+. ..|+.+..+++|+.|+||+|.|+ ..........++
T Consensus 212 ---~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~l---------------- 270 (1255)
T KOG0444|consen 212 ---DNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENL---------------- 270 (1255)
T ss_pred ---hcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhh----------------
Confidence 122334445677788888888887 77888888888888888888887 444444555555
Q ss_pred eeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccc-cCCccccccccCccccCCCCcccccccc
Q 041121 318 VWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISG-KIPKCFNNFTAMTQERSSDPTIKVYYYT 396 (574)
Q Consensus 318 ~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~ 396 (574)
.+++++.|+++ .+|.+++.++.|+.|++.+|+++- -+|..++.+..
T Consensus 271 ---------------EtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~----------------- 317 (1255)
T KOG0444|consen 271 ---------------ETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQ----------------- 317 (1255)
T ss_pred ---------------hhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhh-----------------
Confidence 77888888887 688899999999999999998862 23444444333
Q ss_pred ccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCC
Q 041121 397 FVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLK 476 (574)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 476 (574)
|+++..++|.+. .+|+.+..|..|+.|.|++|++- ..|+++.-++
T Consensus 318 ---------------------------------Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~ 362 (1255)
T KOG0444|consen 318 ---------------------------------LEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLP 362 (1255)
T ss_pred ---------------------------------hHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcC
Confidence 577888888887 89999999999999999999987 6888999999
Q ss_pred CCCEEeCCCCcccccCCCCccCCCCCCEEecc
Q 041121 477 SLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLS 508 (574)
Q Consensus 477 ~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls 508 (574)
.|++||+..|.---..|.--..-++|..-+++
T Consensus 363 ~l~vLDlreNpnLVMPPKP~da~~~lefYNID 394 (1255)
T KOG0444|consen 363 DLKVLDLRENPNLVMPPKPNDARKKLEFYNID 394 (1255)
T ss_pred CcceeeccCCcCccCCCCcchhhhcceeeecc
Confidence 99999999996553555443333556654444
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.6e-32 Score=275.29 Aligned_cols=441 Identities=23% Similarity=0.265 Sum_probs=306.9
Q ss_pred hhhhhcCCCCCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCCC---CcCCcccEEEccCCcCCCCCCccccC
Q 041121 4 LLMRSLRLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLS---NISSNFVSIDLSFNQLQGSIPDSSQH 80 (574)
Q Consensus 4 l~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~L~~L~Ls~n~i~~~~~~~~~~ 80 (574)
+|..+-.--.++.|+++.|.+-..| .+...+.-+|+.|++++|.+...+ ...+.|+.|+++.|.|. ..|.+..+
T Consensus 13 ip~~i~~~~~~~~ln~~~N~~l~~p--l~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~ 89 (1081)
T KOG0618|consen 13 IPEQILNNEALQILNLRRNSLLSRP--LEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIR-SVPSSCSN 89 (1081)
T ss_pred cchhhccHHHHHhhhccccccccCc--hHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHh-hCchhhhh
Confidence 4555555555788888888876654 224555566888888888887762 22368888888888887 66777888
Q ss_pred CCCCCEEEccCCcCccCchhhhhccc-----CCCCCccccccccccccccccCcEEEccCCcccccCCCCCCCCCCCEEE
Q 041121 81 MVYLEHLSLMFNELEGGIPKFFGNML-----NLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLY 155 (574)
Q Consensus 81 l~~L~~L~L~~n~l~~~~~~~~~~l~-----~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~ 155 (574)
+.+|++|.|.+|++. ..|..+..+. +++.|++..+|. .+..+.. ++.+..++|... ..++.. .++.++
T Consensus 90 ~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~~~Pl-~i~~lt~-~~~~~~s~N~~~---~~lg~~-~ik~~~ 162 (1081)
T KOG0618|consen 90 MRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFGPIPL-VIEVLTA-EEELAASNNEKI---QRLGQT-SIKKLD 162 (1081)
T ss_pred hhcchhheeccchhh-cCchhHHhhhcccccccchhccCCCch-hHHhhhH-HHHHhhhcchhh---hhhccc-cchhhh
Confidence 888888888888887 6676555433 555666666665 5555555 556666665111 112222 266666
Q ss_pred ccCcccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCCCCCCCcEEEcC
Q 041121 156 LSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLS 235 (574)
Q Consensus 156 L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~ 235 (574)
+..|.+.+.++.....+.. .|+|++|.+..+. ...+..++.+....|++....- .-++++.|+.+
T Consensus 163 l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~d------------ls~~~~l~~l~c~rn~ls~l~~-~g~~l~~L~a~ 227 (1081)
T KOG0618|consen 163 LRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLD------------LSNLANLEVLHCERNQLSELEI-SGPSLTALYAD 227 (1081)
T ss_pred hhhhhcccchhcchhhhhe--eeecccchhhhhh------------hhhccchhhhhhhhcccceEEe-cCcchheeeec
Confidence 6666666666666655555 6777777665221 3455666677777776653221 13677777788
Q ss_pred CCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCccccccccccccCcc
Q 041121 236 KNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTV 315 (574)
Q Consensus 236 ~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~ 315 (574)
.|.++...... ...+|+++++++|+++ ..|+|...+.+|+.++..+|.++ ..|..+...++|
T Consensus 228 ~n~l~~~~~~p--~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L-------------- 289 (1081)
T KOG0618|consen 228 HNPLTTLDVHP--VPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSL-------------- 289 (1081)
T ss_pred cCcceeecccc--ccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhH--------------
Confidence 88777443322 3467788888888887 45578888888888888888885 666666666666
Q ss_pred ceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccc-cc-cCccccCCCCccccc
Q 041121 316 FIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNN-FT-AMTQERSSDPTIKVY 393 (574)
Q Consensus 316 l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~-l~-~L~~l~l~~~~~~~~ 393 (574)
+.++...|.+.. +|....+.++|++|+|..|++. ..|+.|-. .. .+..+..+.+++...
T Consensus 290 -----------------~~l~~~~nel~y-ip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~l 350 (1081)
T KOG0618|consen 290 -----------------VSLSAAYNELEY-IPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTL 350 (1081)
T ss_pred -----------------HHHHhhhhhhhh-CCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhcccccc
Confidence 667777777774 3445566778888888888887 44443222 11 134444444444322
Q ss_pred cccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCcccc
Q 041121 394 YYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIG 473 (574)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 473 (574)
+. +. -..++.|+.|++.+|.+++..-..+.+..+|+.|+|++|++.......+.
T Consensus 351 p~------------~~--------------e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~ 404 (1081)
T KOG0618|consen 351 PS------------YE--------------ENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLR 404 (1081)
T ss_pred cc------------cc--------------chhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHh
Confidence 20 00 02456689999999999988888899999999999999999966667788
Q ss_pred CCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcccCCCcchhcccCcccccCCC
Q 041121 474 QLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTGTQLQSFNGSVYAGNP 534 (574)
Q Consensus 474 ~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~l~~Np 534 (574)
++..|++|+||+|+++ .+|.....++.|++|...+|+|. +.|...+++.++.++++.|.
T Consensus 405 kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fPe~~~l~qL~~lDlS~N~ 463 (1081)
T KOG0618|consen 405 KLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFPELAQLPQLKVLDLSCNN 463 (1081)
T ss_pred chHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-echhhhhcCcceEEecccch
Confidence 9999999999999999 77899999999999999999999 89988899999999998874
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.4e-29 Score=230.28 Aligned_cols=421 Identities=20% Similarity=0.188 Sum_probs=269.2
Q ss_pred EEEccCCCCCCC-CCcCCcccEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccCchhhhhccc------CCCCCccc
Q 041121 42 TLTSHSCYLRPL-SNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNML------NLSDNKLA 114 (574)
Q Consensus 42 ~L~l~~n~l~~~-~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------~L~~n~l~ 114 (574)
..+.++-.++.+ .++++.-++++|..|+|+.+++.+|+.+++|+.|||++|.|+.+.|.+|.++. .+++|+|+
T Consensus 50 ~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 50 IVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred eEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 456666677777 56778999999999999999999999999999999999999999999999876 66779999
Q ss_pred cccccccccccccCcEEEccCCcccccCCC-CCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCccc
Q 041121 115 IIQNMSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQI 193 (574)
Q Consensus 115 ~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 193 (574)
.+|..+|.++.. ++.|.+.-|++.-+..+ |..+++|..|.+.+|.++.+....|..+..++.+.+..|.+-..-.-..
T Consensus 130 ~l~k~~F~gL~s-lqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~w 208 (498)
T KOG4237|consen 130 DLPKGAFGGLSS-LQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPW 208 (498)
T ss_pred hhhhhHhhhHHH-HHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccch
Confidence 999999999998 99999999999987777 9999999999999999996666699999999999999988431110000
Q ss_pred -c---ccCCchhhcCCCCCCeEeccCCcccCCCCCC-CCCCcEE----EcCCCcccccccccccCCCCccEEECCCCCCC
Q 041121 194 -K---GKLPDLSSRFGTSNPGIDISSNHFEGPIPPL-PSNSSFL----NLSKNRFSRSISLCSISGSKLTYIDLSSNLLS 264 (574)
Q Consensus 194 -~---~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~L~~L----~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~ 264 (574)
. ...|. +++......-..+.+.++..+.+.. ...++.+ ....+.....+..+|..+++|++|+|++|+|+
T Consensus 209 la~~~a~~~i-etsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~ 287 (498)
T KOG4237|consen 209 LADDLAMNPI-ETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT 287 (498)
T ss_pred hhhHHhhchh-hcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc
Confidence 0 00010 0222222222233333333322211 1122221 22222233333456777888888888888888
Q ss_pred CCCCcchhcCCCCcEEEccCcccccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceecc
Q 041121 265 GKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHG 344 (574)
Q Consensus 265 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~ 344 (574)
++.+.+|.++..+++|.|..|++...-...|.++..| ++++|.+|+|+.
T Consensus 288 ~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L-------------------------------~tL~L~~N~it~ 336 (498)
T KOG4237|consen 288 RIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGL-------------------------------KTLSLYDNQITT 336 (498)
T ss_pred hhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccc-------------------------------eeeeecCCeeEE
Confidence 7777888888888888888888876666677777777 778888888888
Q ss_pred CCChhhcCCCCCCEEEccCCcccccCCc-cccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCccc
Q 041121 345 KTPFQLCQFAFLQVLDLSLNNISGKIPK-CFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREY 423 (574)
Q Consensus 345 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (574)
..|.+|....+|.+|+|-.|.+.....- ++. ..|+.-...++ .....+..++.+.+++..+..+.-..++.
T Consensus 337 ~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~--~Wlr~~~~~~~------~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee 408 (498)
T KOG4237|consen 337 VAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLG--EWLRKKSVVGN------PRCQSPGFVRQIPISDVAFGDFRCGGPEE 408 (498)
T ss_pred EecccccccceeeeeehccCcccCccchHHHH--HHHhhCCCCCC------CCCCCCchhccccchhccccccccCCccc
Confidence 8888888888888888887776532211 110 01111000000 00111112222222222222221111100
Q ss_pred c---------cccCcc-cEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCC
Q 041121 424 R---------STLGLI-KSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIP 493 (574)
Q Consensus 424 ~---------~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~ 493 (574)
. ..++-+ ++...|+..++ .+|..+. ..-.+|++.+|.++ .+|+. .+.+| .+|+++|+|....-
T Consensus 409 ~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn 481 (498)
T KOG4237|consen 409 LGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSN 481 (498)
T ss_pred cCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhc
Confidence 0 001111 23344555554 4443332 23456777777777 34443 45666 77888887776666
Q ss_pred CCccCCCCCCEEeccCC
Q 041121 494 SSLSPLSVLSVMDLSYN 510 (574)
Q Consensus 494 ~~l~~l~~L~~L~Ls~N 510 (574)
..|.++.+|.+|-|++|
T Consensus 482 ~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 482 YTFSNMTQLSTLILSYN 498 (498)
T ss_pred ccccchhhhheeEEecC
Confidence 67777777777777765
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-27 Score=221.01 Aligned_cols=325 Identities=20% Similarity=0.163 Sum_probs=240.6
Q ss_pred CeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccC-ccc
Q 041121 209 PGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGN-NSF 287 (574)
Q Consensus 209 ~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l 287 (574)
..++.++-.++.++...++..++++|..|.|+.+++.+|..+++|+.|||++|.|+.+.|++|.++++|.+|.+.+ |+|
T Consensus 49 ~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI 128 (498)
T KOG4237|consen 49 GIVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI 128 (498)
T ss_pred ceEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence 3567777778877777789999999999999999999999999999999999999999999999999988877766 999
Q ss_pred ccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCccc
Q 041121 288 SGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNIS 367 (574)
Q Consensus 288 ~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~ 367 (574)
++...+.|.++.++ +.+.+..|++..+....|..++++..|.+-.|.+.
T Consensus 129 ~~l~k~~F~gL~sl-------------------------------qrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q 177 (498)
T KOG4237|consen 129 TDLPKGAFGGLSSL-------------------------------QRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ 177 (498)
T ss_pred hhhhhhHhhhHHHH-------------------------------HHHhcChhhhcchhHHHHHHhhhcchhcccchhhh
Confidence 98888899999999 67888888888888889999999999999999988
Q ss_pred ccCCccccccccCccccCCCCcccc-cccc------------ccCCCccccccccCcccccccCCCcccc-cccCcccEE
Q 041121 368 GKIPKCFNNFTAMTQERSSDPTIKV-YYYT------------FVGPPYVHHYSFQDKVMPTWKGSGREYR-STLGLIKSL 433 (574)
Q Consensus 368 ~~~~~~~~~l~~L~~l~l~~~~~~~-~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~L~~L 433 (574)
.+...+|..+..++.+.+..|.... .... +.+.....-..+.. ..........| ....++..-
T Consensus 178 ~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~---~Ri~q~~a~kf~c~~esl~s~ 254 (498)
T KOG4237|consen 178 SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYY---KRINQEDARKFLCSLESLPSR 254 (498)
T ss_pred hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHH---HHhcccchhhhhhhHHhHHHh
Confidence 5555588888888888776665211 0000 00000000000000 00001111111 111122111
Q ss_pred EccCCcCCCCCc-HhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcC
Q 041121 434 ELSSNKLNGAVP-EEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNL 512 (574)
Q Consensus 434 ~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l 512 (574)
..+.+...++-| ..|.++++|++|+|++|+|+.+.+.+|.++..+++|.|..|+|..+....|.++..|+.|+|.+|+|
T Consensus 255 ~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~i 334 (498)
T KOG4237|consen 255 LSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQI 334 (498)
T ss_pred hccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCee
Confidence 122222222334 5789999999999999999999999999999999999999999988889999999999999999999
Q ss_pred cccCCCcc-hhcccCcccccCCCCCCCCCCC--------------CCCCCCCCCCCCCCCCCCCCCCCcc
Q 041121 513 SGKIPTGT-QLQSFNGSVYAGNPELCGLPLP--------------NKCRDEESAPGPGMTEGRDDADTSE 567 (574)
Q Consensus 513 ~~~~p~~~-~~~~l~~~~l~~Np~~c~~~l~--------------~~c~~~~~~~~~~~~~~~~~~~~~~ 567 (574)
+..-|..+ ...++..+.+.+|||-|+|.+. ..|..+..-..-.+++.+-++-+|.
T Consensus 335 t~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~ 404 (498)
T KOG4237|consen 335 TTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCG 404 (498)
T ss_pred EEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccC
Confidence 97777664 3677888899999999999973 2576666655556666665555554
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-22 Score=228.40 Aligned_cols=331 Identities=21% Similarity=0.171 Sum_probs=217.3
Q ss_pred hcCCCCCCcEEEccCCCCCC-----------CCCcCCcccEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccCchhh
Q 041121 33 VIGKLHSLKTLTSHSCYLRP-----------LSNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKF 101 (574)
Q Consensus 33 ~~~~l~~L~~L~l~~n~l~~-----------~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 101 (574)
+|.++++|++|.+..+.... ...++.+|+.|.+.++.++ .+|..| ...+|+.|++++|++. .++.
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~- 628 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWD- 628 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccc-
Confidence 78899999999887654321 1223457888888888877 556666 5678888888888776 3443
Q ss_pred hhcccCCCCCccccccccccccccccCcEEEccCCcccccCCCCCCCCCCCEEEccCcccccccchhhhccCCCCEEEcc
Q 041121 102 FGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLS 181 (574)
Q Consensus 102 ~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls 181 (574)
.+..+++ |+.|+++++.....+|.+..+++|++|++++|..-..+|..+..+++|+.|+++
T Consensus 629 ------------------~~~~l~~-Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~ 689 (1153)
T PLN03210 629 ------------------GVHSLTG-LRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS 689 (1153)
T ss_pred ------------------ccccCCC-CCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence 4456777 999999987655566678888999999999887666788889999999999999
Q ss_pred CCC-CCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCC
Q 041121 182 QNS-LTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSS 260 (574)
Q Consensus 182 ~N~-l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~ 260 (574)
+|. ++ .+|.. ..+++|+.|++++|.....+|..+.+|++|++++|.+..++... .+++|++|.+.+
T Consensus 690 ~c~~L~---------~Lp~~--i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~--~l~~L~~L~l~~ 756 (1153)
T PLN03210 690 RCENLE---------ILPTG--INLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNL--RLENLDELILCE 756 (1153)
T ss_pred CCCCcC---------ccCCc--CCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccc--cccccccccccc
Confidence 853 33 33432 25678888888888766666666777888888888876654321 456777777766
Q ss_pred CCCC-------CCCCcchhcCCCCcEEEccCcccccCCCcccccccCccccccccccccCccceeeeccccccccccccc
Q 041121 261 NLLS-------GKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEER 333 (574)
Q Consensus 261 n~l~-------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 333 (574)
+... ...+..+...++|+.|++++|...+.+|..+..+++| +
T Consensus 757 ~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L-------------------------------~ 805 (1153)
T PLN03210 757 MKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKL-------------------------------E 805 (1153)
T ss_pred cchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCC-------------------------------C
Confidence 4321 1112222234566666666665555556556555555 5
Q ss_pred eEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCccc
Q 041121 334 FVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVM 413 (574)
Q Consensus 334 ~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (574)
.|++++|.....+|..+ .+++|+.|++++|......|.
T Consensus 806 ~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~----------------------------------------- 843 (1153)
T PLN03210 806 HLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD----------------------------------------- 843 (1153)
T ss_pred EEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc-----------------------------------------
Confidence 55555554333334333 455566666665432212221
Q ss_pred ccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCc-CcccCCccccCCCCCCEEeCCCC
Q 041121 414 PTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNH-LTGQNSPKIGQLKSLDFLDLSRN 486 (574)
Q Consensus 414 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N 486 (574)
...+|+.|+|++|.++ .+|..+..+++|++|+|++|+ ++ .+|..+..+++|+.+++++|
T Consensus 844 ------------~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 844 ------------ISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred ------------cccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecCCC
Confidence 1234677778887776 667777777788888887743 54 35556667777777777776
|
syringae 6; Provisional |
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.5e-22 Score=211.04 Aligned_cols=268 Identities=23% Similarity=0.247 Sum_probs=194.3
Q ss_pred CCCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCCCCcCCcccEEEccCCcCCCCCCccccCCCCCCEEEccC
Q 041121 12 HSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMF 91 (574)
Q Consensus 12 ~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 91 (574)
..-..|++++++++.+|. .+. ++|+.|++++|+++.++...++|++|++++|+++. +|.. .++|+.|++++
T Consensus 201 ~~~~~LdLs~~~LtsLP~---~l~--~~L~~L~L~~N~Lt~LP~lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPD---CLP--AHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTS-LPVL---PPGLLELSIFS 271 (788)
T ss_pred CCCcEEEcCCCCCCcCCc---chh--cCCCEEEccCCcCCCCCCCCCCCcEEEecCCccCc-ccCc---ccccceeeccC
Confidence 457789999999998876 454 48999999999999998888999999999999984 4532 46889999999
Q ss_pred CcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccccCCCCCCCCCCCEEEccCcccccccchhhhc
Q 041121 92 NELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQ 171 (574)
Q Consensus 92 n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~ 171 (574)
|.++ .+|..+ .. |+.|++++|+++..+. ..++|++|++++|++.+. |..
T Consensus 272 N~L~-~Lp~lp----------------------~~-L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~L-p~l--- 320 (788)
T PRK15387 272 NPLT-HLPALP----------------------SG-LCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLASL-PAL--- 320 (788)
T ss_pred Cchh-hhhhch----------------------hh-cCEEECcCCccccccc---cccccceeECCCCccccC-CCC---
Confidence 9887 344321 22 7777888887775432 236788888888877743 332
Q ss_pred cCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCC
Q 041121 172 IFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGS 251 (574)
Q Consensus 172 l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~ 251 (574)
...|+.|++++|.|+.++. . ..+|+.|++++|++++ +|..+.+|+.|++++|.+..++.. ..
T Consensus 321 p~~L~~L~Ls~N~L~~LP~---------l----p~~Lq~LdLS~N~Ls~-LP~lp~~L~~L~Ls~N~L~~LP~l----~~ 382 (788)
T PRK15387 321 PSELCKLWAYNNQLTSLPT---------L----PSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPAL----PS 382 (788)
T ss_pred cccccccccccCccccccc---------c----ccccceEecCCCccCC-CCCCCcccceehhhccccccCccc----cc
Confidence 2356777788877764432 1 1367788888888875 444567788888888888865532 35
Q ss_pred CccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCccccccccccccCccceeeeccccccccccc
Q 041121 252 KLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWE 331 (574)
Q Consensus 252 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~ 331 (574)
+|+.|++++|.+++ +|.. .++|+.|++++|.+++ +|..+ .+|
T Consensus 383 ~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l~---~~L------------------------------ 424 (788)
T PRK15387 383 GLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPMLP---SGL------------------------------ 424 (788)
T ss_pred ccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcch---hhh------------------------------
Confidence 78888888888884 4433 3578888999988874 45432 234
Q ss_pred cceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCcccccc
Q 041121 332 ERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNF 377 (574)
Q Consensus 332 ~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 377 (574)
+.+++++|+++ .+|..++.+++|+.|+|++|++++..+..+..+
T Consensus 425 -~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l 468 (788)
T PRK15387 425 -LSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 468 (788)
T ss_pred -hhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence 66888888887 567788888999999999999987776655433
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.6e-21 Score=216.85 Aligned_cols=309 Identities=18% Similarity=0.168 Sum_probs=220.4
Q ss_pred hhhhcCCCCCcEEECCCCCCCC-------CCchhhhcCCC-CCCcEEEccCCCCCCCCC-c-CCcccEEEccCCcCCCCC
Q 041121 5 LMRSLRLHSLRYLNLEENNLAN-------CSDWFQVIGKL-HSLKTLTSHSCYLRPLSN-I-SSNFVSIDLSFNQLQGSI 74 (574)
Q Consensus 5 ~~~l~~l~~L~~L~Ls~n~i~~-------~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~-~-~~~L~~L~Ls~n~i~~~~ 74 (574)
+.+|.++++|+.|.+..+.... +|. .|..+ .+|+.|.+.++.++.++. + ..+|++|++++|.+. .+
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~---~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~-~L 626 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPE---GFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLE-KL 626 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCc---chhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCcccc-cc
Confidence 3679999999999997664321 233 56665 469999999999888733 2 379999999999998 57
Q ss_pred CccccCCCCCCEEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccccCCC-CCCCCCCCE
Q 041121 75 PDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKR 153 (574)
Q Consensus 75 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~ 153 (574)
+..+..+++|+.|+|+++.....+| .+..+++ |++|++++|......|. +..+++|++
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip--------------------~ls~l~~-Le~L~L~~c~~L~~lp~si~~L~~L~~ 685 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEIP--------------------DLSMATN-LETLKLSDCSSLVELPSSIQYLNKLED 685 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcCC--------------------ccccCCc-ccEEEecCCCCccccchhhhccCCCCE
Confidence 7888999999999999875433444 3445666 99999998765555555 888899999
Q ss_pred EEccCcccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCCC-CCCCcEE
Q 041121 154 LYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPL-PSNSSFL 232 (574)
Q Consensus 154 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~L~~L 232 (574)
|++++|..-..+|..+ ++++|+.|++++|... +.+|.. ..+|+.|++++|.+...+... +++|++|
T Consensus 686 L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L--------~~~p~~----~~nL~~L~L~~n~i~~lP~~~~l~~L~~L 752 (1153)
T PLN03210 686 LDMSRCENLEILPTGI-NLKSLYRLNLSGCSRL--------KSFPDI----STNISWLDLDETAIEEFPSNLRLENLDEL 752 (1153)
T ss_pred EeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCc--------cccccc----cCCcCeeecCCCccccccccccccccccc
Confidence 9998875444566554 6888999999887421 122322 357888999998877543332 6778888
Q ss_pred EcCCCcccc-------cccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCccccc
Q 041121 233 NLSKNRFSR-------SISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQF 305 (574)
Q Consensus 233 ~L~~n~i~~-------~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~ 305 (574)
.+.++.... ..+..+...++|++|++++|......|..+..+++|+.|++++|...+.+|... .+++|
T Consensus 753 ~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL---- 827 (1153)
T PLN03210 753 ILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESL---- 827 (1153)
T ss_pred cccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-Ccccc----
Confidence 887644322 112222345789999999997766788899999999999999876544666554 56667
Q ss_pred cccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccC
Q 041121 306 TQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERS 385 (574)
Q Consensus 306 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l 385 (574)
+.+++++|......|.. ..+|+.|+|++|.++ .+|..+..+++|+.+++
T Consensus 828 ---------------------------~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L 876 (1153)
T PLN03210 828 ---------------------------ESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDM 876 (1153)
T ss_pred ---------------------------CEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEEC
Confidence 77778776544444332 357888888888887 56767777777766665
Q ss_pred CC
Q 041121 386 SD 387 (574)
Q Consensus 386 ~~ 387 (574)
++
T Consensus 877 ~~ 878 (1153)
T PLN03210 877 NG 878 (1153)
T ss_pred CC
Confidence 54
|
syringae 6; Provisional |
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-21 Score=206.91 Aligned_cols=252 Identities=25% Similarity=0.268 Sum_probs=200.2
Q ss_pred hhhhhhcCCCCCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCCCCcCCcccEEEccCCcCCCCCCccccCCC
Q 041121 3 KLLMRSLRLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNISSNFVSIDLSFNQLQGSIPDSSQHMV 82 (574)
Q Consensus 3 ~l~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~ 82 (574)
.+|..+. ++|+.|++++|+++.+|. ..++|++|++++|+++.++...++|++|++++|.++. +|.. ..
T Consensus 215 sLP~~l~--~~L~~L~L~~N~Lt~LP~------lp~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~L~~-Lp~l---p~ 282 (788)
T PRK15387 215 TLPDCLP--AHITTLVIPDNNLTSLPA------LPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTH-LPAL---PS 282 (788)
T ss_pred cCCcchh--cCCCEEEccCCcCCCCCC------CCCCCcEEEecCCccCcccCcccccceeeccCCchhh-hhhc---hh
Confidence 4666665 389999999999999875 2589999999999999998778999999999999984 4443 36
Q ss_pred CCCEEEccCCcCccCchhhhhccc--CCCCCccccccccccccccccCcEEEccCCcccccCCCCCCCCCCCEEEccCcc
Q 041121 83 YLEHLSLMFNELEGGIPKFFGNML--NLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNL 160 (574)
Q Consensus 83 ~L~~L~L~~n~l~~~~~~~~~~l~--~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~L~~n~ 160 (574)
+|+.|++++|+++ .+|....++. ++++|.++.+|. ++.+|+.|++++|++++++ .+ ..+|++|++++|+
T Consensus 283 ~L~~L~Ls~N~Lt-~LP~~p~~L~~LdLS~N~L~~Lp~-----lp~~L~~L~Ls~N~L~~LP-~l--p~~Lq~LdLS~N~ 353 (788)
T PRK15387 283 GLCKLWIFGNQLT-SLPVLPPGLQELSVSDNQLASLPA-----LPSELCKLWAYNNQLTSLP-TL--PSGLQELSVSDNQ 353 (788)
T ss_pred hcCEEECcCCccc-cccccccccceeECCCCccccCCC-----CcccccccccccCcccccc-cc--ccccceEecCCCc
Confidence 7889999999998 5565444444 888999998876 2223889999999998543 32 2589999999999
Q ss_pred cccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCCccc
Q 041121 161 LNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFS 240 (574)
Q Consensus 161 i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~ 240 (574)
|+. +|.. ..+|+.|++++|+|+.++. . ..+|+.|++++|++++ +|..+.+|+.|++++|.+.
T Consensus 354 Ls~-LP~l---p~~L~~L~Ls~N~L~~LP~---------l----~~~L~~LdLs~N~Lt~-LP~l~s~L~~LdLS~N~Ls 415 (788)
T PRK15387 354 LAS-LPTL---PSELYKLWAYNNRLTSLPA---------L----PSGLKELIVSGNRLTS-LPVLPSELKELMVSGNRLT 415 (788)
T ss_pred cCC-CCCC---CcccceehhhccccccCcc---------c----ccccceEEecCCcccC-CCCcccCCCEEEccCCcCC
Confidence 984 4443 3578889999999885542 1 2468999999999996 5555789999999999999
Q ss_pred ccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccc
Q 041121 241 RSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFL 298 (574)
Q Consensus 241 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 298 (574)
+++.. ..+|+.|++++|+|+ .+|..+..+++|+.|++++|++++..+..+..+
T Consensus 416 sIP~l----~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l 468 (788)
T PRK15387 416 SLPML----PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 468 (788)
T ss_pred CCCcc----hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence 76542 357899999999998 678889999999999999999998777665443
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.8e-19 Score=190.49 Aligned_cols=55 Identities=22% Similarity=0.313 Sum_probs=25.7
Q ss_pred CCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccc
Q 041121 228 NSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFS 288 (574)
Q Consensus 228 ~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 288 (574)
+|+.|++++|.++.++... .++|++|++++|.++. +|..+. ++|+.|++++|.++
T Consensus 305 sL~~L~Ls~N~Lt~LP~~l---~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~ 359 (754)
T PRK15370 305 GITHLNVQSNSLTALPETL---PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT 359 (754)
T ss_pred hHHHHHhcCCccccCCccc---cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC
Confidence 3444444444444332211 1455555555555553 333222 45555566555554
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-18 Score=184.18 Aligned_cols=227 Identities=23% Similarity=0.310 Sum_probs=144.6
Q ss_pred CCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCC-CCcCCcccEEEccCCcCCCCCCccccCCCCCCEEEccC
Q 041121 13 SLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPL-SNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMF 91 (574)
Q Consensus 13 ~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 91 (574)
+..+|+++++.++.+|. .+. +.|+.|++++|+++.+ ..+..+|++|++++|+++ .+|..+. ++|+.|+|++
T Consensus 179 ~~~~L~L~~~~LtsLP~---~Ip--~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 179 NKTELRLKILGLTTIPA---CIP--EQITTLILDNNELKSLPENLQGNIKTLYANSNQLT-SIPATLP--DTIQEMELSI 250 (754)
T ss_pred CceEEEeCCCCcCcCCc---ccc--cCCcEEEecCCCCCcCChhhccCCCEEECCCCccc-cCChhhh--ccccEEECcC
Confidence 56788888888888865 332 5788888888888877 334468888888888887 4455443 4688888888
Q ss_pred CcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccccCCCCCCCCCCCEEEccCcccccccchhhhc
Q 041121 92 NELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQ 171 (574)
Q Consensus 92 n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~ 171 (574)
|.+. .+|..+. .. |+.|++++|+++.++..+. ++|++|++++|+++. +|..+.
T Consensus 251 N~L~-~LP~~l~---------------------s~-L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp- 303 (754)
T PRK15370 251 NRIT-ELPERLP---------------------SA-LQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRT-LPAHLP- 303 (754)
T ss_pred CccC-cCChhHh---------------------CC-CCEEECcCCccCccccccC--CCCcEEECCCCcccc-Ccccch-
Confidence 8877 4554322 12 7777777777774333232 467777777777763 343332
Q ss_pred cCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCC
Q 041121 172 IFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGS 251 (574)
Q Consensus 172 l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~ 251 (574)
+.|+.|++++|.++.++.. ..++|+.|++++|.+++.....+++|+.|++++|.|..++. .+ .+
T Consensus 304 -~sL~~L~Ls~N~Lt~LP~~------------l~~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~L~~LP~-~l--p~ 367 (754)
T PRK15370 304 -SGITHLNVQSNSLTALPET------------LPPGLKTLEAGENALTSLPASLPPELQVLDVSKNQITVLPE-TL--PP 367 (754)
T ss_pred -hhHHHHHhcCCccccCCcc------------ccccceeccccCCccccCChhhcCcccEEECCCCCCCcCCh-hh--cC
Confidence 3567777777776643321 12456777777777766443345677777777777765433 22 25
Q ss_pred CccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcc
Q 041121 252 KLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDS 294 (574)
Q Consensus 252 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 294 (574)
+|++|++++|.++. +|..+. ..|+.|++++|++. .+|..
T Consensus 368 ~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~-~LP~s 406 (754)
T PRK15370 368 TITTLDVSRNALTN-LPENLP--AALQIMQASRNNLV-RLPES 406 (754)
T ss_pred CcCEEECCCCcCCC-CCHhHH--HHHHHHhhccCCcc-cCchh
Confidence 67777777777773 344333 25777777777776 44443
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-18 Score=172.10 Aligned_cols=108 Identities=22% Similarity=0.254 Sum_probs=67.0
Q ss_pred CcccEEEccCCcCCCCC----cHhhhhcCCCCEEeCCCCcCcccCCcccc-----CCCCCCEEeCCCCcccc----cCCC
Q 041121 428 GLIKSLELSSNKLNGAV----PEEIMDLVGLVALNLSRNHLTGQNSPKIG-----QLKSLDFLDLSRNQLVG----GIPS 494 (574)
Q Consensus 428 ~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-----~l~~L~~L~L~~N~i~~----~~~~ 494 (574)
++|++|++++|.+++.. ...+..+++|++|++++|.+++.....+. ..+.|++|++++|.++. ....
T Consensus 193 ~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~ 272 (319)
T cd00116 193 CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAE 272 (319)
T ss_pred CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHH
Confidence 45677888888776332 23445667788888888877743222221 23678888888887752 2233
Q ss_pred CccCCCCCCEEeccCCcCccc----CCCc-chh-cccCcccccCCCC
Q 041121 495 SLSPLSVLSVMDLSYNNLSGK----IPTG-TQL-QSFNGSVYAGNPE 535 (574)
Q Consensus 495 ~l~~l~~L~~L~Ls~N~l~~~----~p~~-~~~-~~l~~~~l~~Np~ 535 (574)
.+..+++|+.+++++|.++.. +... ... ..++.+++.+|||
T Consensus 273 ~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 273 VLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 455567888888888888722 1111 122 5667777777775
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-17 Score=165.17 Aligned_cols=165 Identities=24% Similarity=0.223 Sum_probs=78.7
Q ss_pred hhhcCCCCCcEEECCCCCCCCC--CchhhhcCCCCCCcEEEccCCCCCCC----------CCcCCcccEEEccCCcCCCC
Q 041121 6 MRSLRLHSLRYLNLEENNLANC--SDWFQVIGKLHSLKTLTSHSCYLRPL----------SNISSNFVSIDLSFNQLQGS 73 (574)
Q Consensus 6 ~~l~~l~~L~~L~Ls~n~i~~~--~~~~~~~~~l~~L~~L~l~~n~l~~~----------~~~~~~L~~L~Ls~n~i~~~ 73 (574)
..+..+++|++|+++++.++.. ..+...+...+.+++|+++++.+... ..-.++|++|++++|.+...
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 96 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD 96 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence 3444555566666666665443 22223445555566666666655420 01124555555555555443
Q ss_pred CCccccCCCC---CCEEEccCCcCccCchhhhhcccCCCCCccccccccccccc-cccCcEEEccCCccccc----CCC-
Q 041121 74 IPDSSQHMVY---LEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCL-KNSLESLHLEVNHFTGP----IPD- 144 (574)
Q Consensus 74 ~~~~~~~l~~---L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l-~~~L~~L~L~~n~l~~~----~~~- 144 (574)
.+..+..+.+ |++|++++|++.......+.. .+..+ ++ |+.|++++|.+++. ...
T Consensus 97 ~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~---------------~l~~~~~~-L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 97 GCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK---------------GLKDLPPA-LEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred HHHHHHHHhccCcccEEEeeCCccchHHHHHHHH---------------HHHhCCCC-ceEEEcCCCcCCchHHHHHHHH
Confidence 3333333333 555555555554211111111 22333 34 66666666665521 111
Q ss_pred CCCCCCCCEEEccCcccccc----cchhhhccCCCCEEEccCCCCC
Q 041121 145 LGGFSSMKRLYLSDNLLNGT----INKSIGQIFKLEITCLSQNSLT 186 (574)
Q Consensus 145 l~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~Ls~N~l~ 186 (574)
+..+++|++|++++|.+.+. ++..+..+++|+.|++++|.++
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT 206 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccC
Confidence 44455566666666655521 2233444456666666666554
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-18 Score=144.04 Aligned_cols=155 Identities=30% Similarity=0.471 Sum_probs=107.2
Q ss_pred CCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCccccccccccccCccceeeecccccccc
Q 041121 249 SGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFE 328 (574)
Q Consensus 249 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~ 328 (574)
.+..++.|.+++|+++ .+|..+..+.+|+.|++.+|+++ ..|..++.+++|
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~kl--------------------------- 81 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKL--------------------------- 81 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhh---------------------------
Confidence 5677788888888888 56666788888888888888887 666677777766
Q ss_pred ccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccc-cCCccccccccCccccCCCCccccccccccCCCcccccc
Q 041121 329 SWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISG-KIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYS 407 (574)
Q Consensus 329 ~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~ 407 (574)
+.++++-|++. ..|..|+.+|.|+.|||++|++.. ..|..|-.++.
T Consensus 82 ----r~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~t---------------------------- 128 (264)
T KOG0617|consen 82 ----RILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTT---------------------------- 128 (264)
T ss_pred ----hheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHH----------------------------
Confidence 55666655555 566667777777777777776643 23444433333
Q ss_pred ccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCc
Q 041121 408 FQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQ 487 (574)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 487 (574)
|+.|+|+.|.+. .+|..++.+++|+.|.+..|.+- ..|..++.++.|++|++.+|+
T Consensus 129 ----------------------lralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 129 ----------------------LRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred ----------------------HHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccce
Confidence 356667777776 66777777777777777777765 566667777777777777777
Q ss_pred cc
Q 041121 488 LV 489 (574)
Q Consensus 488 i~ 489 (574)
++
T Consensus 185 l~ 186 (264)
T KOG0617|consen 185 LT 186 (264)
T ss_pred ee
Confidence 76
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.1e-17 Score=135.26 Aligned_cols=131 Identities=25% Similarity=0.430 Sum_probs=75.9
Q ss_pred CCCCCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCCCCcCCcccEEEccCCcCCCCCCccccCCCCCCEEEc
Q 041121 10 RLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSL 89 (574)
Q Consensus 10 ~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 89 (574)
++.+++.|.||+|.++.+|. .+..+.+|++|++++|+|+ .+|..++.+++|++|++
T Consensus 31 ~~s~ITrLtLSHNKl~~vpp---nia~l~nlevln~~nnqie---------------------~lp~~issl~klr~lnv 86 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPP---NIAELKNLEVLNLSNNQIE---------------------ELPTSISSLPKLRILNV 86 (264)
T ss_pred chhhhhhhhcccCceeecCC---cHHHhhhhhhhhcccchhh---------------------hcChhhhhchhhhheec
Confidence 34445555555555555533 3455555555555554444 45556666666666666
Q ss_pred cCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccc-cCCC-CCCCCCCCEEEccCcccccccch
Q 041121 90 MFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTG-PIPD-LGGFSSMKRLYLSDNLLNGTINK 167 (574)
Q Consensus 90 ~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~-~~~~-l~~l~~L~~L~L~~n~i~~~~~~ 167 (574)
+-|++. ..|. .|+.+|. |+.||+++|++.. ..|+ |..++.|+.|++++|.+. ++|.
T Consensus 87 gmnrl~-~lpr-------------------gfgs~p~-levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~ 144 (264)
T KOG0617|consen 87 GMNRLN-ILPR-------------------GFGSFPA-LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPP 144 (264)
T ss_pred chhhhh-cCcc-------------------ccCCCch-hhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCCh
Confidence 666655 4444 4455555 6666666666654 3344 666666666666666665 5566
Q ss_pred hhhccCCCCEEEccCCCCC
Q 041121 168 SIGQIFKLEITCLSQNSLT 186 (574)
Q Consensus 168 ~~~~l~~L~~L~Ls~N~l~ 186 (574)
.++++++|+.|.+.+|.+-
T Consensus 145 dvg~lt~lqil~lrdndll 163 (264)
T KOG0617|consen 145 DVGKLTNLQILSLRDNDLL 163 (264)
T ss_pred hhhhhcceeEEeeccCchh
Confidence 6666666666666666554
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.6e-12 Score=136.97 Aligned_cols=118 Identities=36% Similarity=0.638 Sum_probs=107.6
Q ss_pred cccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEecc
Q 041121 429 LIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLS 508 (574)
Q Consensus 429 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls 508 (574)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+++.+|..+..+++|+.|+|++|++++.+|+.+..+++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCcccCCCcch--hcccCcccccCCCCCCCCCCCCCCC
Q 041121 509 YNNLSGKIPTGTQ--LQSFNGSVYAGNPELCGLPLPNKCR 546 (574)
Q Consensus 509 ~N~l~~~~p~~~~--~~~l~~~~l~~Np~~c~~~l~~~c~ 546 (574)
+|+++|.+|.... ...+..+++.+|+.+|++|-...|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 9999999998632 2345677899999999987666774
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.3e-13 Score=133.53 Aligned_cols=192 Identities=30% Similarity=0.426 Sum_probs=117.4
Q ss_pred EEcCCCccccccccccc-CCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCcccccccccc
Q 041121 232 LNLSKNRFSRSISLCSI-SGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQF 310 (574)
Q Consensus 232 L~L~~n~i~~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~ 310 (574)
|.|++-++...+...+. .+.--...|++.|++. .+|..+..+..|+.+.++.|.+. .+|..+..+..|
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~l--------- 123 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEAL--------- 123 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHH---------
Confidence 44444444443332222 2233345677777776 66776777777777777777777 666677777777
Q ss_pred ccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCcc
Q 041121 311 NRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTI 390 (574)
Q Consensus 311 ~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~ 390 (574)
++++|+.|+++ ..|..+|.++ |+.|-+++|+++ ..|..++....|
T Consensus 124 ----------------------t~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl---------- 168 (722)
T KOG0532|consen 124 ----------------------TFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTL---------- 168 (722)
T ss_pred ----------------------HHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhH----------
Confidence 66777777776 4666777776 888888888887 666665544444
Q ss_pred ccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCc
Q 041121 391 KVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSP 470 (574)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 470 (574)
..||.+.|.+. .+|..+.++.+|+.|+++.|.+. ..|.
T Consensus 169 ----------------------------------------~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~ 206 (722)
T KOG0532|consen 169 ----------------------------------------AHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPE 206 (722)
T ss_pred ----------------------------------------HHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCH
Confidence 55555566554 55555556666666666666655 2333
Q ss_pred cccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCc
Q 041121 471 KIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLS 513 (574)
Q Consensus 471 ~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~ 513 (574)
.+..+ .|..||+++|+|. .+|-.|..|+.|++|-|.+|.++
T Consensus 207 El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 207 ELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred HHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 33333 3556666666665 45555666666666666666665
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.3e-13 Score=123.75 Aligned_cols=251 Identities=16% Similarity=0.136 Sum_probs=130.0
Q ss_pred hhhcCCCCCcEEECCCCCCCCC-C-chhhhcCCCCCCcEEEccCCCCCCC-CCcCCcccEEEccCCcCCCCCCccccCCC
Q 041121 6 MRSLRLHSLRYLNLEENNLANC-S-DWFQVIGKLHSLKTLTSHSCYLRPL-SNISSNFVSIDLSFNQLQGSIPDSSQHMV 82 (574)
Q Consensus 6 ~~l~~l~~L~~L~Ls~n~i~~~-~-~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~ 82 (574)
+.+..+..++.|+||+|.+..- . .+...+.+.++|+..++++--.... ..+...|. ....++..+|
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~-----------~l~~aL~~~~ 92 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALK-----------MLSKALLGCP 92 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHH-----------HHHHHHhcCC
Confidence 4456677888888888887766 2 2334567777888887776433222 00000000 0112233444
Q ss_pred CCCEEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccc----c---------CCC-CCCC
Q 041121 83 YLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTG----P---------IPD-LGGF 148 (574)
Q Consensus 83 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~----~---------~~~-l~~l 148 (574)
+|++||||+|.+....+..|..+ +..+.. |++|.|.+|.+.- . ... .+.-
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~l---------------l~s~~~-L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~ 156 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEEL---------------LSSCTD-LEELYLNNCGLGPEAGGRLGRALFELAVNKKAASK 156 (382)
T ss_pred ceeEeeccccccCccchHHHHHH---------------HHhccC-HHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCC
Confidence 55555555555544444444332 222333 4444444444321 0 011 3334
Q ss_pred CCCCEEEccCccccc----ccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCC---
Q 041121 149 SSMKRLYLSDNLLNG----TINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGP--- 221 (574)
Q Consensus 149 ~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~--- 221 (574)
++|+++...+|++.. .+...|...+.|+.+.++.|.|..-.. .+-...+.+|++|+.||+.+|.++..
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~-----~al~eal~~~~~LevLdl~DNtft~egs~ 231 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGV-----TALAEALEHCPHLEVLDLRDNTFTLEGSV 231 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchh-----HHHHHHHHhCCcceeeecccchhhhHHHH
Confidence 555555555555532 123344455555555555555432111 01111144555555555555555421
Q ss_pred ----CCCCCCCCcEEEcCCCcccccccccc-----cCCCCccEEECCCCCCCCC----CCcchhcCCCCcEEEccCcccc
Q 041121 222 ----IPPLPSNSSFLNLSKNRFSRSISLCS-----ISGSKLTYIDLSSNLLSGK----LPDCWWMFDSLVILDLGNNSFS 288 (574)
Q Consensus 222 ----~~~~~~~L~~L~L~~n~i~~~~~~~~-----~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~ 288 (574)
.-..+++|+++++.+|.+..-....+ ...|+|+.|.+.+|.|+.. ........+.|+.|+|++|.+.
T Consensus 232 ~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 232 ALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 11113577788888887766554332 2568889999999888732 2233455788999999999883
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.7e-12 Score=109.90 Aligned_cols=127 Identities=19% Similarity=0.158 Sum_probs=47.8
Q ss_pred cCCCCCCcEEEccCCCCCCCCCcC---CcccEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccCchhhhhcccCCCC
Q 041121 34 IGKLHSLKTLTSHSCYLRPLSNIS---SNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSD 110 (574)
Q Consensus 34 ~~~l~~L~~L~l~~n~l~~~~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 110 (574)
+.+..++++|+|++|+|+.+.++. .+|+.|++++|.|+.. +.+..+++|++|++++|+|+...+ .+
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~-~l-------- 83 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISE-GL-------- 83 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CH-HH--------
T ss_pred cccccccccccccccccccccchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcccc-ch--------
Confidence 345556677777777777664332 4677777777777743 247778889999999998884322 11
Q ss_pred CccccccccccccccccCcEEEccCCcccccCCC--CCCCCCCCEEEccCccccccc---chhhhccCCCCEEEccC
Q 041121 111 NKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPD--LGGFSSMKRLYLSDNLLNGTI---NKSIGQIFKLEITCLSQ 182 (574)
Q Consensus 111 n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~--l~~l~~L~~L~L~~n~i~~~~---~~~~~~l~~L~~L~Ls~ 182 (574)
...+|+ |++|++++|++.....- +..+++|++|++.+|.+.... ...+..+|+|+.||-..
T Consensus 84 ----------~~~lp~-L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 84 ----------DKNLPN-LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp ----------HHH-TT---EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred ----------HHhCCc-CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 124677 89999999988764443 778899999999999887432 23567889999887654
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.9e-11 Score=106.61 Aligned_cols=124 Identities=23% Similarity=0.247 Sum_probs=40.1
Q ss_pred cCCCCCcEEECCCCCCCCCCchhhhcC-CCCCCcEEEccCCCCCCCCCcC--CcccEEEccCCcCCCCCCccc-cCCCCC
Q 041121 9 LRLHSLRYLNLEENNLANCSDWFQVIG-KLHSLKTLTSHSCYLRPLSNIS--SNFVSIDLSFNQLQGSIPDSS-QHMVYL 84 (574)
Q Consensus 9 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~--~~L~~L~Ls~n~i~~~~~~~~-~~l~~L 84 (574)
.+..++++|+|++|.|+.+.. ++ .+.+|+.|++++|+|+.+.++. +.|++|++++|+|+.. ...+ ..+|+|
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie~----L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L 90 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIEN----LGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNL 90 (175)
T ss_dssp --------------------S------TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S--CHHHHHH-TT-
T ss_pred ccccccccccccccccccccc----hhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCcc-ccchHHhCCcC
Confidence 344456777777777776643 33 4667777777777777764443 6777777777777643 3333 356777
Q ss_pred CEEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccccCCC----CCCCCCCCEEEc
Q 041121 85 EHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPD----LGGFSSMKRLYL 156 (574)
Q Consensus 85 ~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~----l~~l~~L~~L~L 156 (574)
++|++++|+|.... .+. .+..+++ |+.|++.+|.++..... +..+|+|+.||-
T Consensus 91 ~~L~L~~N~I~~l~--~l~----------------~L~~l~~-L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 91 QELYLSNNKISDLN--ELE----------------PLSSLPK-LRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -EEE-TTS---SCC--CCG----------------GGGG-TT---EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CEEECcCCcCCChH--HhH----------------HHHcCCC-cceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 77777777765321 111 3445666 77777777777644321 456677777764
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.4e-12 Score=120.96 Aligned_cols=207 Identities=21% Similarity=0.179 Sum_probs=112.6
Q ss_pred CCCCCCcEEEccCCCCCCCC-----CcCCcccEEEccCCcCCC--CCCccccCCCCCCEEEccCCcCccCchhhhhcccC
Q 041121 35 GKLHSLKTLTSHSCYLRPLS-----NISSNFVSIDLSFNQLQG--SIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLN 107 (574)
Q Consensus 35 ~~l~~L~~L~l~~n~l~~~~-----~~~~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 107 (574)
+++++|+.+.|.++.+.... ..+++++.||||+|-+.. .+......+|+|+.|+|+.|++..-....
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~------ 191 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN------ 191 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcccc------
Confidence 34556666666665554432 223555566666655442 12233456777777777777765211110
Q ss_pred CCCCccccccccccccccccCcEEEccCCcccccCCC--CCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCC
Q 041121 108 LSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPD--LGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSL 185 (574)
Q Consensus 108 L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~--l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l 185 (574)
.-..++. |+.|.++.|.++..... +..+|+|+.|++.+|....+......-++.|+.|+|++|++
T Consensus 192 ------------~~~~l~~-lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~l 258 (505)
T KOG3207|consen 192 ------------TTLLLSH-LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNL 258 (505)
T ss_pred ------------chhhhhh-hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcc
Confidence 1112444 77777777777643222 55677777788777754334445555677777778887777
Q ss_pred CcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCCccccccccc------ccCCCCccEEECC
Q 041121 186 TDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLC------SISGSKLTYIDLS 259 (574)
Q Consensus 186 ~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~------~~~~~~L~~L~L~ 259 (574)
.+.+..... +.++.|+.|.++.+.+. ++.... ....++|++|++.
T Consensus 259 i~~~~~~~~--------~~l~~L~~Lnls~tgi~---------------------si~~~d~~s~~kt~~f~kL~~L~i~ 309 (505)
T KOG3207|consen 259 IDFDQGYKV--------GTLPGLNQLNLSSTGIA---------------------SIAEPDVESLDKTHTFPKLEYLNIS 309 (505)
T ss_pred ccccccccc--------ccccchhhhhccccCcc---------------------hhcCCCccchhhhcccccceeeecc
Confidence 655433222 23333344444444433 322111 1245777777777
Q ss_pred CCCCCCC-CCcchhcCCCCcEEEccCccccc
Q 041121 260 SNLLSGK-LPDCWWMFDSLVILDLGNNSFSG 289 (574)
Q Consensus 260 ~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~ 289 (574)
.|+|... ....+..+++|+.|.+..|.++.
T Consensus 310 ~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 310 ENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred cCccccccccchhhccchhhhhhcccccccc
Confidence 7777521 11234455666777777777653
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2e-12 Score=127.10 Aligned_cols=175 Identities=30% Similarity=0.468 Sum_probs=138.2
Q ss_pred cCCCCcEEEccCcccccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcC
Q 041121 273 MFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQ 352 (574)
Q Consensus 273 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~ 352 (574)
++.--...|++.|++. ++|..+..+..| ..+.|..|.+. .+|.++++
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~L-------------------------------e~liLy~n~~r-~ip~~i~~ 119 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSL-------------------------------ESLILYHNCIR-TIPEAICN 119 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHH-------------------------------HHHHHHhccce-ecchhhhh
Confidence 4445567778888877 667666666666 55666777766 46667777
Q ss_pred CCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccE
Q 041121 353 FAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKS 432 (574)
Q Consensus 353 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 432 (574)
+..|+.+||+.|+++ ..|..+..++ |+.
T Consensus 120 L~~lt~l~ls~NqlS-~lp~~lC~lp---------------------------------------------------Lkv 147 (722)
T KOG0532|consen 120 LEALTFLDLSSNQLS-HLPDGLCDLP---------------------------------------------------LKV 147 (722)
T ss_pred hhHHHHhhhccchhh-cCChhhhcCc---------------------------------------------------cee
Confidence 778888888888877 5554433222 689
Q ss_pred EEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcC
Q 041121 433 LELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNL 512 (574)
Q Consensus 433 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l 512 (574)
|-+++|+++ .+|..++.+..|..|+.+.|.+. ..|..++++.+|+.|.+..|++.. .|..+..+ .|.+||+|.|++
T Consensus 148 li~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~~L-pLi~lDfScNki 223 (722)
T KOG0532|consen 148 LIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELCSL-PLIRLDFSCNKI 223 (722)
T ss_pred EEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHhCC-ceeeeecccCce
Confidence 999999998 88888999999999999999998 567788999999999999999995 45555655 599999999999
Q ss_pred cccCCCc-chhcccCcccccCCCCCC
Q 041121 513 SGKIPTG-TQLQSFNGSVYAGNPELC 537 (574)
Q Consensus 513 ~~~~p~~-~~~~~l~~~~l~~Np~~c 537 (574)
+ .||.. ..+..+..+.+..||...
T Consensus 224 s-~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 224 S-YLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred e-ecchhhhhhhhheeeeeccCCCCC
Confidence 9 88876 578999999999999653
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.1e-12 Score=116.79 Aligned_cols=222 Identities=18% Similarity=0.163 Sum_probs=136.1
Q ss_pred hhhhhhhcCCCCCcEEECCCCCCCCC----Cc----hhhhcCCCCCCcEEEccCCCCCCC--------CCcCCcccEEEc
Q 041121 2 RKLLMRSLRLHSLRYLNLEENNLANC----SD----WFQVIGKLHSLKTLTSHSCYLRPL--------SNISSNFVSIDL 65 (574)
Q Consensus 2 ~~l~~~l~~l~~L~~L~Ls~n~i~~~----~~----~~~~~~~l~~L~~L~l~~n~l~~~--------~~~~~~L~~L~L 65 (574)
+.+-+.+.+.++|++-++|.--.... |. +.+++-.+++|++|+||+|.+..- ..-+..|++|.|
T Consensus 48 ~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L 127 (382)
T KOG1909|consen 48 RAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYL 127 (382)
T ss_pred HHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhh
Confidence 44556677777777777775432222 11 234566677777777777766543 111357777777
Q ss_pred cCCcCCCC-------------CCccccCCCCCCEEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEE
Q 041121 66 SFNQLQGS-------------IPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLH 132 (574)
Q Consensus 66 s~n~i~~~-------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~ 132 (574)
.+|.+.-. ..+....-++|+++..++|++.......+.. .|...+. |+.+.
T Consensus 128 ~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~---------------~~~~~~~-leevr 191 (382)
T KOG1909|consen 128 NNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAE---------------AFQSHPT-LEEVR 191 (382)
T ss_pred hcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHH---------------HHHhccc-cceEE
Confidence 77776522 1223345678888888888887444333332 5666777 88888
Q ss_pred ccCCcccccCC----C-CCCCCCCCEEEccCccccc----ccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhc
Q 041121 133 LEVNHFTGPIP----D-LGGFSSMKRLYLSDNLLNG----TINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSR 203 (574)
Q Consensus 133 L~~n~l~~~~~----~-l~~l~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~ 203 (574)
+.+|.|..... . |..++.|++|||.+|-++. .+...++.++.|+.|+++++.++.-....+...+..
T Consensus 192 ~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~---- 267 (382)
T KOG1909|consen 192 LSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKE---- 267 (382)
T ss_pred EecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhc----
Confidence 88887763211 2 6777888888888887753 245566677778888888877765443333322211
Q ss_pred CCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCCccccccc----ccccCCCCccEEECCCCCCC
Q 041121 204 FGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSIS----LCSISGSKLTYIDLSSNLLS 264 (574)
Q Consensus 204 ~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~----~~~~~~~~L~~L~L~~n~l~ 264 (574)
. .+.|+.+.+.+|.|+.-.. .+....+.|.+|++++|.+.
T Consensus 268 ~---------------------~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 268 S---------------------APSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred c---------------------CCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 1 3556666666666654222 22334677888888888873
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.6e-11 Score=111.40 Aligned_cols=88 Identities=27% Similarity=0.265 Sum_probs=59.1
Q ss_pred cCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccC-CCCccCCCCCCEE
Q 041121 427 LGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGI-PSSLSPLSVLSVM 505 (574)
Q Consensus 427 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~-~~~l~~l~~L~~L 505 (574)
+++|+.||||+|.++ .+.++-..+-+.++|.|++|.|... ..++.+-+|..||+++|+|.... -..++++|-|+.+
T Consensus 328 L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l 404 (490)
T KOG1259|consen 328 LPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETL 404 (490)
T ss_pred cccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHH
Confidence 455677777777776 5555666677777777777777522 24556667777777777777432 2356777777777
Q ss_pred eccCCcCcccCCC
Q 041121 506 DLSYNNLSGKIPT 518 (574)
Q Consensus 506 ~Ls~N~l~~~~p~ 518 (574)
.|.+|++. .+|+
T Consensus 405 ~L~~NPl~-~~vd 416 (490)
T KOG1259|consen 405 RLTGNPLA-GSVD 416 (490)
T ss_pred hhcCCCcc-ccch
Confidence 77777777 4443
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.9e-11 Score=110.99 Aligned_cols=205 Identities=20% Similarity=0.142 Sum_probs=131.2
Q ss_pred hhhcCCCCCcEEECCCCC--CCC--C-Cch-hhhcCCCCCCcEEEccCCCCCCC---CCcCCcccEEEccCCcCCCC---
Q 041121 6 MRSLRLHSLRYLNLEENN--LAN--C-SDW-FQVIGKLHSLKTLTSHSCYLRPL---SNISSNFVSIDLSFNQLQGS--- 73 (574)
Q Consensus 6 ~~l~~l~~L~~L~Ls~n~--i~~--~-~~~-~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~L~~L~Ls~n~i~~~--- 73 (574)
..+.-+.+|++|..++.. +.. + +.. .-.+.-+++|..+.++.|.-..+ ....|.|+++...+..++..
T Consensus 176 hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l 255 (490)
T KOG1259|consen 176 HVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSL 255 (490)
T ss_pred HHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccc
Confidence 344556778888877642 111 1 110 00345567788888888764444 44457888888876655421
Q ss_pred CCcc--------------------ccCCCCCCEEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEc
Q 041121 74 IPDS--------------------SQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHL 133 (574)
Q Consensus 74 ~~~~--------------------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L 133 (574)
.|.. +....-|+++||++|.|+ .+.+ ++.-.|+ ++.|++
T Consensus 256 ~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~-~iDE-------------------SvKL~Pk-ir~L~l 314 (490)
T KOG1259|consen 256 LPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLIT-QIDE-------------------SVKLAPK-LRRLIL 314 (490)
T ss_pred cchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchh-hhhh-------------------hhhhccc-eeEEec
Confidence 2211 122345677777777666 2222 4555677 888888
Q ss_pred cCCcccccCCCCCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEec
Q 041121 134 EVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDI 213 (574)
Q Consensus 134 ~~n~l~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l 213 (574)
++|.+..+. .++.+++|++|||++|.++ .+..+=.++-+.++|.|++|.|.+++. ...+-+|..||+
T Consensus 315 S~N~i~~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~LSG-----------L~KLYSLvnLDl 381 (490)
T KOG1259|consen 315 SQNRIRTVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETLSG-----------LRKLYSLVNLDL 381 (490)
T ss_pred cccceeeeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhhhh-----------hHhhhhheeccc
Confidence 888888433 3778888888888888887 334444567788888888888876543 456667888888
Q ss_pred cCCcccCCCC----CCCCCCcEEEcCCCccccccc
Q 041121 214 SSNHFEGPIP----PLPSNSSFLNLSKNRFSRSIS 244 (574)
Q Consensus 214 ~~n~l~~~~~----~~~~~L~~L~L~~n~i~~~~~ 244 (574)
++|++..... ..++.|+.+.|.+|.+.++..
T Consensus 382 ~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 382 SSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred cccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 8888775321 127888888899998876554
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.5e-10 Score=117.99 Aligned_cols=80 Identities=38% Similarity=0.492 Sum_probs=41.7
Q ss_pred ccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccC
Q 041121 430 IKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSY 509 (574)
Q Consensus 430 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~ 509 (574)
|+++.+++|.+. ..+..+..+.++..+.+.+|++.. .+..+..++++++|++++|+++.+.. +..+.+++.|++++
T Consensus 211 L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~ 286 (394)
T COG4886 211 LEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSG 286 (394)
T ss_pred hhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhccccccceecccccccccccc--ccccCccCEEeccC
Confidence 355555555433 344445555555555555555542 23444555555555555555553332 55555555555555
Q ss_pred CcCc
Q 041121 510 NNLS 513 (574)
Q Consensus 510 N~l~ 513 (574)
|.++
T Consensus 287 n~~~ 290 (394)
T COG4886 287 NSLS 290 (394)
T ss_pred cccc
Confidence 5554
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.6e-10 Score=116.30 Aligned_cols=165 Identities=28% Similarity=0.438 Sum_probs=88.4
Q ss_pred EEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCCC---CcCC-cccEEEccCCcCCCCCCccccCCCCCCEEEccC
Q 041121 16 YLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLS---NISS-NFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMF 91 (574)
Q Consensus 16 ~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 91 (574)
.++++.+.+..... .+..+..++.|++.+|.++.+. .... +|+.|++++|.+. .+|..+..+++|+.|++++
T Consensus 97 ~l~~~~~~~~~~~~---~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLRSNIS---ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeeccccccccCch---hhhcccceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence 46666666633322 3455577777777777777762 2232 6777777777777 4455677777888888887
Q ss_pred CcCccCchhhh---hccc--CCCCCccccccccccccccccCcEEEccCCcccccCCCCCCCCCCCEEEccCcccccccc
Q 041121 92 NELEGGIPKFF---GNML--NLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTIN 166 (574)
Q Consensus 92 n~l~~~~~~~~---~~l~--~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~L~~n~i~~~~~ 166 (574)
|++. .+|... ..+. ++++|.+..+|. ....... |++|.+++|++...+..+..+.++..+.+.+|++. ..+
T Consensus 173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~-~~~~~~~-L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~ 248 (394)
T COG4886 173 NDLS-DLPKLLSNLSNLNNLDLSGNKISDLPP-EIELLSA-LEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLP 248 (394)
T ss_pred chhh-hhhhhhhhhhhhhheeccCCccccCch-hhhhhhh-hhhhhhcCCcceecchhhhhcccccccccCCceee-ecc
Confidence 7777 333321 1111 344444444443 2222222 55555555543323333444555555555555554 223
Q ss_pred hhhhccCCCCEEEccCCCCCcc
Q 041121 167 KSIGQIFKLEITCLSQNSLTDL 188 (574)
Q Consensus 167 ~~~~~l~~L~~L~Ls~N~l~~l 188 (574)
..+..++.+++|++++|.++++
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~~i 270 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQISSI 270 (394)
T ss_pred chhccccccceecccccccccc
Confidence 4444555555555555555543
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.4e-11 Score=116.05 Aligned_cols=214 Identities=19% Similarity=0.184 Sum_probs=132.5
Q ss_pred hhhhcCCCCCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCC------CCcCCcccEEEccCCcCCCCCCccc
Q 041121 5 LMRSLRLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPL------SNISSNFVSIDLSFNQLQGSIPDSS 78 (574)
Q Consensus 5 ~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~~L~~L~Ls~n~i~~~~~~~~ 78 (574)
-+.=+++..|+.+.|.+..+...+.- +....|++++.|||++|-+..+ ..-.++|+.|+++.|++........
T Consensus 114 ~akQsn~kkL~~IsLdn~~V~~~~~~-~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~ 192 (505)
T KOG3207|consen 114 AAKQSNLKKLREISLDNYRVEDAGIE-EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT 192 (505)
T ss_pred HHHhhhHHhhhheeecCccccccchh-hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc
Confidence 33346778888888888887776310 2567889999999999887776 2334889999999998864332222
Q ss_pred -cCCCCCCEEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccccCCC-CCCCCCCCEEEc
Q 041121 79 -QHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYL 156 (574)
Q Consensus 79 -~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~L 156 (574)
..+++|+.|.|+.|.++...... ....+|. |+.|+|..|........ ...+..|++|+|
T Consensus 193 ~~~l~~lK~L~l~~CGls~k~V~~------------------~~~~fPs-l~~L~L~~N~~~~~~~~~~~i~~~L~~LdL 253 (505)
T KOG3207|consen 193 TLLLSHLKQLVLNSCGLSWKDVQW------------------ILLTFPS-LEVLYLEANEIILIKATSTKILQTLQELDL 253 (505)
T ss_pred hhhhhhhheEEeccCCCCHHHHHH------------------HHHhCCc-HHHhhhhcccccceecchhhhhhHHhhccc
Confidence 35788889999988887322221 3444666 77777777742222222 555667777777
Q ss_pred cCccccccc-chhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccC--CCCCC--CCCCcE
Q 041121 157 SDNLLNGTI-NKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEG--PIPPL--PSNSSF 231 (574)
Q Consensus 157 ~~n~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~--~~~~~--~~~L~~ 231 (574)
++|.+.... ......++.|..|+++.+.+.++..-... .. . ....+++|+.|++..|++.. .+-.. +.+|+.
T Consensus 254 s~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~-s~-~-kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~ 330 (505)
T KOG3207|consen 254 SNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVE-SL-D-KTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKH 330 (505)
T ss_pred cCCcccccccccccccccchhhhhccccCcchhcCCCcc-ch-h-hhcccccceeeecccCccccccccchhhccchhhh
Confidence 777664221 23455677777777777777655321110 00 0 02455677777777777742 11111 566777
Q ss_pred EEcCCCcccc
Q 041121 232 LNLSKNRFSR 241 (574)
Q Consensus 232 L~L~~n~i~~ 241 (574)
|.+..|.+..
T Consensus 331 l~~~~n~ln~ 340 (505)
T KOG3207|consen 331 LRITLNYLNK 340 (505)
T ss_pred hhcccccccc
Confidence 7777777654
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.9e-10 Score=82.52 Aligned_cols=61 Identities=41% Similarity=0.497 Sum_probs=43.4
Q ss_pred CCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcC
Q 041121 452 VGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNL 512 (574)
Q Consensus 452 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l 512 (574)
++|++|++++|+++.+.++.|.++++|++|++++|+++.+.++.|.++++|+.|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3566777777777766666777777777777777777766667777777777777777764
|
... |
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=8.5e-10 Score=117.83 Aligned_cols=93 Identities=30% Similarity=0.465 Sum_probs=75.9
Q ss_pred ccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCC-CCCCE
Q 041121 426 TLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPL-SVLSV 504 (574)
Q Consensus 426 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l-~~L~~ 504 (574)
.+++|+.|+|++|.+++.+|..+..+++|+.|+|++|++++.+|..++++++|+.|+|++|++++.+|..+... .++..
T Consensus 440 ~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~ 519 (623)
T PLN03150 440 KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRAS 519 (623)
T ss_pred CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCce
Confidence 34446888899998888888888889999999999999988888888889999999999999988888877653 45678
Q ss_pred EeccCCcCcccCCC
Q 041121 505 MDLSYNNLSGKIPT 518 (574)
Q Consensus 505 L~Ls~N~l~~~~p~ 518 (574)
+++++|...+..|.
T Consensus 520 l~~~~N~~lc~~p~ 533 (623)
T PLN03150 520 FNFTDNAGLCGIPG 533 (623)
T ss_pred EEecCCccccCCCC
Confidence 88888886655553
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.3e-10 Score=81.20 Aligned_cols=61 Identities=39% Similarity=0.553 Sum_probs=57.1
Q ss_pred CcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcc
Q 041121 428 GLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQL 488 (574)
Q Consensus 428 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i 488 (574)
|+|++|++++|.++...++.|.++++|++|++++|+++.+.+++|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4689999999999977778999999999999999999999999999999999999999986
|
... |
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.3e-10 Score=116.91 Aligned_cols=237 Identities=26% Similarity=0.262 Sum_probs=104.8
Q ss_pred CCCCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCCCC-c--CCcccEEEccCCcCCCCCCccccCCCCCCEE
Q 041121 11 LHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSN-I--SSNFVSIDLSFNQLQGSIPDSSQHMVYLEHL 87 (574)
Q Consensus 11 l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 87 (574)
+..++.+.+..|.|..+.. .+..+.+|.+|++.+|+|..+.. + .++|++|++++|.|+.+. .+..++.|+.|
T Consensus 71 l~~l~~l~l~~n~i~~~~~---~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L 145 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILN---HLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKEL 145 (414)
T ss_pred hHhHHhhccchhhhhhhhc---ccccccceeeeeccccchhhcccchhhhhcchheecccccccccc--chhhccchhhh
Confidence 3444444455555554322 34555555555555555555433 1 244555555555554321 23344445555
Q ss_pred EccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccccCCC-CCCCCCCCEEEccCcccccccc
Q 041121 88 SLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNLLNGTIN 166 (574)
Q Consensus 88 ~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~L~~n~i~~~~~ 166 (574)
++++|.|+. +. .+..++. |+.+++++|++..+... ...+.+++.+.+.+|.+..+
T Consensus 146 ~l~~N~i~~-~~--------------------~~~~l~~-L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i-- 201 (414)
T KOG0531|consen 146 NLSGNLISD-IS--------------------GLESLKS-LKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREI-- 201 (414)
T ss_pred eeccCcchh-cc--------------------CCccchh-hhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcc--
Confidence 555554441 11 2222444 55555555555533332 34455555555555555422
Q ss_pred hhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCC--CCCeEeccCCcccCC--CCCCCCCCcEEEcCCCccccc
Q 041121 167 KSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGT--SNPGIDISSNHFEGP--IPPLPSNSSFLNLSKNRFSRS 242 (574)
Q Consensus 167 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~--~L~~L~l~~n~l~~~--~~~~~~~L~~L~L~~n~i~~~ 242 (574)
..+..+..+..+++..|.++.+.... ... .|+.+++++|.+... .......+..+++..|++...
T Consensus 202 ~~~~~~~~l~~~~l~~n~i~~~~~l~-----------~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~ 270 (414)
T KOG0531|consen 202 EGLDLLKKLVLLSLLDNKISKLEGLN-----------ELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNL 270 (414)
T ss_pred cchHHHHHHHHhhcccccceeccCcc-----------cchhHHHHHHhcccCccccccccccccccccccchhhcccccc
Confidence 22333333444455555544332211 011 245555555555532 122245555555555555543
Q ss_pred ccccccCCCCccEEECCCCCCCCC---CCc-chhcCCCCcEEEccCccccc
Q 041121 243 ISLCSISGSKLTYIDLSSNLLSGK---LPD-CWWMFDSLVILDLGNNSFSG 289 (574)
Q Consensus 243 ~~~~~~~~~~L~~L~L~~n~l~~~---~~~-~~~~l~~L~~L~L~~N~l~~ 289 (574)
... ...+.+..+....|.+... ... .....+.++.+.+..|.+..
T Consensus 271 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 271 EGL--ERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred ccc--cccchHHHhccCcchhcchhhhhccccccccccccccccccCcccc
Confidence 321 1234444444444444311 111 13344556666666665543
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.9e-10 Score=116.07 Aligned_cols=125 Identities=30% Similarity=0.288 Sum_probs=75.1
Q ss_pred CcEEEccCCcccccCCCCCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCC
Q 041121 128 LESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTS 207 (574)
Q Consensus 128 L~~L~L~~n~l~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~ 207 (574)
++.+.+..|.+......+..+++|+.|++.+|+|..+ ...+..+++|++|++++|.|+.+... ..
T Consensus 74 l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~~l-----------~~--- 138 (414)
T KOG0531|consen 74 LKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLEGL-----------ST--- 138 (414)
T ss_pred HHhhccchhhhhhhhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccccch-----------hh---
Confidence 6666677777775344477777888888888887633 22266677777777777777755421 11
Q ss_pred CCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCC-cchhcCCCCcEEEccCcc
Q 041121 208 NPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLP-DCWWMFDSLVILDLGNNS 286 (574)
Q Consensus 208 L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~ 286 (574)
+..|+.|++++|.|..+.... .+..|+.+++++|.++...+ . ...+.+++.+++++|.
T Consensus 139 ------------------l~~L~~L~l~~N~i~~~~~~~--~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 139 ------------------LTLLKELNLSGNLISDISGLE--SLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNS 197 (414)
T ss_pred ------------------ccchhhheeccCcchhccCCc--cchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCc
Confidence 233455555555555443322 25666666666666664333 1 3555666666666666
Q ss_pred cc
Q 041121 287 FS 288 (574)
Q Consensus 287 l~ 288 (574)
+.
T Consensus 198 i~ 199 (414)
T KOG0531|consen 198 IR 199 (414)
T ss_pred hh
Confidence 64
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.6e-09 Score=109.79 Aligned_cols=62 Identities=26% Similarity=0.201 Sum_probs=30.2
Q ss_pred cccccccCcEEEccCCcccccCCC-CCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCC
Q 041121 121 SGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLT 186 (574)
Q Consensus 121 ~~~l~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 186 (574)
+..+++ |++|||++|++..++.. -.++. |..|.+++|.++.. ..+.++.+|+.||+++|-|.
T Consensus 205 Lr~l~~-LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~ 267 (1096)
T KOG1859|consen 205 LRRLPK-LKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLS 267 (1096)
T ss_pred HHhccc-ccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhccchhHhhhh
Confidence 344555 55555555555533322 22322 55555555555422 33445555555555555544
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.2e-09 Score=106.88 Aligned_cols=112 Identities=32% Similarity=0.324 Sum_probs=88.9
Q ss_pred ccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCC
Q 041121 422 EYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSV 501 (574)
Q Consensus 422 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~ 501 (574)
..++-++.|+.|+|++|+++.. +.+..++.|++|||++|.++.+..-.-.++. |+.|.+++|.++.. ..+.++++
T Consensus 181 ~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~Lks 255 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKS 255 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhhh
Confidence 3456678899999999999743 3789999999999999999854433334444 99999999999844 34788999
Q ss_pred CCEEeccCCcCcccCC--CcchhcccCcccccCCCCCCC
Q 041121 502 LSVMDLSYNNLSGKIP--TGTQLQSFNGSVYAGNPELCG 538 (574)
Q Consensus 502 L~~L~Ls~N~l~~~~p--~~~~~~~l~~~~l~~Np~~c~ 538 (574)
|+.||+++|-|.+.-. .-..+..+..+.+.|||.-|.
T Consensus 256 L~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 256 LYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred hhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 9999999999985433 224578888999999998774
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.43 E-value=3e-08 Score=89.29 Aligned_cols=248 Identities=17% Similarity=0.116 Sum_probs=131.8
Q ss_pred hhcCCCCCcEEECCCCCCCCC-Cc-hhhhcCCCCCCcEEEccCCCCCCC--------------CCcCCcccEEEccCCcC
Q 041121 7 RSLRLHSLRYLNLEENNLANC-SD-WFQVIGKLHSLKTLTSHSCYLRPL--------------SNISSNFVSIDLSFNQL 70 (574)
Q Consensus 7 ~l~~l~~L~~L~Ls~n~i~~~-~~-~~~~~~~l~~L~~L~l~~n~l~~~--------------~~~~~~L~~L~Ls~n~i 70 (574)
-+.-+..++.+|||+|-|..- .. +...+.+-++|+..+++.--.... .--+|+|+..+||.|.+
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 344577888899999988776 33 224566678888888876543332 01126777777777776
Q ss_pred CCCCCccc----cCCCCCCEEEccCCcCccCchhhhhc-ccCCCCCccccccccccccccccCcEEEccCCcccccCCC-
Q 041121 71 QGSIPDSS----QHMVYLEHLSLMFNELEGGIPKFFGN-MLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPD- 144 (574)
Q Consensus 71 ~~~~~~~~----~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~- 144 (574)
....|..+ ++-..|++|.+++|.+....-..+++ +..|..|+ -...-|. |+......|++..-...
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nK-------Kaa~kp~-Le~vicgrNRlengs~~~ 176 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNK-------KAADKPK-LEVVICGRNRLENGSKEL 176 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHh-------hhccCCC-ceEEEeccchhccCcHHH
Confidence 64444333 45566777777777554222122221 11111111 1122344 77777777766532211
Q ss_pred ----CCCCCCCCEEEccCcccccc-----cchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccC
Q 041121 145 ----LGGFSSMKRLYLSDNLLNGT-----INKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISS 215 (574)
Q Consensus 145 ----l~~l~~L~~L~L~~n~i~~~-----~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~ 215 (574)
+..-..|+++.+..|.|.-. ....+..+++|+.||+.+|.++......+...++.|
T Consensus 177 ~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W--------------- 241 (388)
T COG5238 177 SAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEW--------------- 241 (388)
T ss_pred HHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhccc---------------
Confidence 33335677777777766522 112234466677777777766654444443344443
Q ss_pred CcccCCCCCCCCCCcEEEcCCCccccccccc----c--cCCCCccEEECCCCCCCCCC------Ccc-hhcCCCCcEEEc
Q 041121 216 NHFEGPIPPLPSNSSFLNLSKNRFSRSISLC----S--ISGSKLTYIDLSSNLLSGKL------PDC-WWMFDSLVILDL 282 (574)
Q Consensus 216 n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~----~--~~~~~L~~L~L~~n~l~~~~------~~~-~~~l~~L~~L~L 282 (574)
+.|++|.+..|.++.-...+ | -..|+|..|-..+|.+.+.. +.. -..++-|..|.+
T Consensus 242 -----------~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ 310 (388)
T COG5238 242 -----------NLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLER 310 (388)
T ss_pred -----------chhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHH
Confidence 33455555555444322211 1 13466666766666654321 111 124566677777
Q ss_pred cCcccc
Q 041121 283 GNNSFS 288 (574)
Q Consensus 283 ~~N~l~ 288 (574)
.+|++.
T Consensus 311 ngNr~~ 316 (388)
T COG5238 311 NGNRIK 316 (388)
T ss_pred ccCcch
Confidence 777776
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.42 E-value=4e-07 Score=99.77 Aligned_cols=250 Identities=18% Similarity=0.155 Sum_probs=122.2
Q ss_pred CCCcEEEccCCCCCCCCC--cCCcccEEEccCCc--CCCCCCccccCCCCCCEEEccCCcCccCchhhhhccc-----CC
Q 041121 38 HSLKTLTSHSCYLRPLSN--ISSNFVSIDLSFNQ--LQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNML-----NL 108 (574)
Q Consensus 38 ~~L~~L~l~~n~l~~~~~--~~~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----~L 108 (574)
...|.+.+.+|.+..+.. ..+.|++|-+..|. +.......|..+|.|++|||++|.--+.+|..++.+- +|
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L 602 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDL 602 (889)
T ss_pred hheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccc
Confidence 445555555555544411 12456666666664 3433344455666666666665544445555555432 34
Q ss_pred CCCccccccccccccccccCcEEEccCCcccccCCC-CCCCCCCCEEEccCccc--ccccchhhhccCCCCEEEccCCCC
Q 041121 109 SDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNLL--NGTINKSIGQIFKLEITCLSQNSL 185 (574)
Q Consensus 109 ~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~L~~n~i--~~~~~~~~~~l~~L~~L~Ls~N~l 185 (574)
+...+..+|. .+.++.. |.+|++..+.....++. ...+++|++|.+..... ....-..+..+..|+.+.......
T Consensus 603 ~~t~I~~LP~-~l~~Lk~-L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~ 680 (889)
T KOG4658|consen 603 SDTGISHLPS-GLGNLKK-LIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV 680 (889)
T ss_pred cCCCccccch-HHHHHHh-hheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh
Confidence 4444444555 6667776 88888887765545555 56688888888765542 122233344555555555533222
Q ss_pred CcccCccccccCCchhhcCCCCC----CeEeccCCcccCCCCCC--CCCCcEEEcCCCccccccccccc-----C-CCCc
Q 041121 186 TDLANIQIKGKLPDLSSRFGTSN----PGIDISSNHFEGPIPPL--PSNSSFLNLSKNRFSRSISLCSI-----S-GSKL 253 (574)
Q Consensus 186 ~~l~~~~~~~~lp~~~~~~~~~L----~~L~l~~n~l~~~~~~~--~~~L~~L~L~~n~i~~~~~~~~~-----~-~~~L 253 (574)
..+.. +..+..| +.+.+.++.....+... +.+|+.|.+.++.+......... . ++++
T Consensus 681 ~~~e~-----------l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l 749 (889)
T KOG4658|consen 681 LLLED-----------LLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNL 749 (889)
T ss_pred HhHhh-----------hhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHH
Confidence 00000 0111111 12222222222222221 67777777777776543322211 0 2233
Q ss_pred cEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCc
Q 041121 254 TYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNI 301 (574)
Q Consensus 254 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 301 (574)
..+...++... ..+.+....++|+.|.+..+...+.+......+..+
T Consensus 750 ~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l 796 (889)
T KOG4658|consen 750 SKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLEL 796 (889)
T ss_pred HHHHhhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhc
Confidence 33333333222 233344456788888887776654444444433333
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.8e-07 Score=100.95 Aligned_cols=128 Identities=23% Similarity=0.228 Sum_probs=85.6
Q ss_pred CCCCeEeccCCcccCCCCCC-CCCCcEEEcCCCc--ccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEc
Q 041121 206 TSNPGIDISSNHFEGPIPPL-PSNSSFLNLSKNR--FSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDL 282 (574)
Q Consensus 206 ~~L~~L~l~~n~l~~~~~~~-~~~L~~L~L~~n~--i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 282 (574)
...+...+-+|.+....-.. .+.|+.|-+..|. +..+....|..++.|+.||+++|.=-+..|..++++-+|++|++
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L 602 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDL 602 (889)
T ss_pred hheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccc
Confidence 34455555555554332222 3467777777775 55555555667788888888877654577888888888888888
Q ss_pred cCcccccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEcc
Q 041121 283 GNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLS 362 (574)
Q Consensus 283 ~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~ 362 (574)
++..++ .+|..+..+..| .+|++..+......+.....+.+|++|.+-
T Consensus 603 ~~t~I~-~LP~~l~~Lk~L-------------------------------~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~ 650 (889)
T KOG4658|consen 603 SDTGIS-HLPSGLGNLKKL-------------------------------IYLNLEVTGRLESIPGILLELQSLRVLRLP 650 (889)
T ss_pred cCCCcc-ccchHHHHHHhh-------------------------------heeccccccccccccchhhhcccccEEEee
Confidence 888887 777777777777 666666666555556666667778877777
Q ss_pred CCc
Q 041121 363 LNN 365 (574)
Q Consensus 363 ~n~ 365 (574)
...
T Consensus 651 ~s~ 653 (889)
T KOG4658|consen 651 RSA 653 (889)
T ss_pred ccc
Confidence 654
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.1e-08 Score=79.85 Aligned_cols=108 Identities=20% Similarity=0.269 Sum_probs=81.9
Q ss_pred ccEEEccCCcCCCCCcHhhh-hcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEecc
Q 041121 430 IKSLELSSNKLNGAVPEEIM-DLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLS 508 (574)
Q Consensus 430 L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls 508 (574)
|+..+|++|.+. ..|..|. ..+.++.|+|++|.|+ ..|..+..++.|+.|+++.|.+. ..|..+..+.++-.|+..
T Consensus 55 l~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 55 LTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred EEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence 577889999988 5555554 4568899999999998 56666888999999999999998 677777778889999999
Q ss_pred CCcCcccCCCcchhcccC-cccccCCCCCCCCCC
Q 041121 509 YNNLSGKIPTGTQLQSFN-GSVYAGNPELCGLPL 541 (574)
Q Consensus 509 ~N~l~~~~p~~~~~~~l~-~~~l~~Np~~c~~~l 541 (574)
+|.+. .||....+++.. .+.+..+||--+|+.
T Consensus 132 ~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~ 164 (177)
T KOG4579|consen 132 ENARA-EIDVDLFYSSLPALIKLGNEPLGDETKK 164 (177)
T ss_pred CCccc-cCcHHHhccccHHHHHhcCCcccccCcc
Confidence 99987 777664443333 344667787766554
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.23 E-value=8.9e-07 Score=81.09 Aligned_cols=197 Identities=19% Similarity=0.128 Sum_probs=104.3
Q ss_pred CcEEEccCCCCCCC------CCcCCcccEEEccCCcCCC--CCCccccCCCCCCEEEccCCcCccCchhhhhcccCCCCC
Q 041121 40 LKTLTSHSCYLRPL------SNISSNFVSIDLSFNQLQG--SIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDN 111 (574)
Q Consensus 40 L~~L~l~~n~l~~~------~~~~~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n 111 (574)
+..|-+.++.|... ....+.++++||.+|.|+. .+...+.++|.|++|+|+.|.+...+-.
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~----------- 115 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS----------- 115 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc-----------
Confidence 33455556655554 2223677888888888763 3445567888999999998888733211
Q ss_pred ccccccccccccccccCcEEEccCCcccccCCC--CCCCCCCCEEEccCccccc--ccchhhhcc-CCCCEEEccCCCCC
Q 041121 112 KLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPD--LGGFSSMKRLYLSDNLLNG--TINKSIGQI-FKLEITCLSQNSLT 186 (574)
Q Consensus 112 ~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~--l~~l~~L~~L~L~~n~i~~--~~~~~~~~l-~~L~~L~Ls~N~l~ 186 (574)
+| ....+ |+.|-|.+..+...... +..+|.+++|+++.|.+.. ......... +.+++|.+.+|...
T Consensus 116 ----lp----~p~~n-l~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~ 186 (418)
T KOG2982|consen 116 ----LP----LPLKN-LRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQ 186 (418)
T ss_pred ----Cc----ccccc-eEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHH
Confidence 11 12344 88888888877653332 6778888888888884432 112222222 24555555554322
Q ss_pred ccc-CccccccCCchhhcCCCCCCeEeccCCcccCCCC----CCCCCCcEEEcCCCccccccc-ccccCCCCccEEECCC
Q 041121 187 DLA-NIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIP----PLPSNSSFLNLSKNRFSRSIS-LCSISGSKLTYIDLSS 260 (574)
Q Consensus 187 ~l~-~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~----~~~~~L~~L~L~~n~i~~~~~-~~~~~~~~L~~L~L~~ 260 (574)
.-. .+.+ ...++++..+.+..|.+...-. ...+.+..|+|+.+.|.+... ..+.+++.|..|.+++
T Consensus 187 ~w~~~~~l--------~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~ 258 (418)
T KOG2982|consen 187 LWLNKNKL--------SRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSE 258 (418)
T ss_pred HHHHHHhH--------HhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccC
Confidence 100 0000 1234455555555555543211 113344455555555544322 2334555555555555
Q ss_pred CCCC
Q 041121 261 NLLS 264 (574)
Q Consensus 261 n~l~ 264 (574)
+.+.
T Consensus 259 ~Pl~ 262 (418)
T KOG2982|consen 259 NPLS 262 (418)
T ss_pred Cccc
Confidence 5544
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.15 E-value=5e-08 Score=89.08 Aligned_cols=35 Identities=20% Similarity=0.195 Sum_probs=18.7
Q ss_pred CcccEEEccCCcCCCCCCccccCCCCCCEEEccCC
Q 041121 58 SNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFN 92 (574)
Q Consensus 58 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 92 (574)
..|+.|.+-++++.+.+...+++..+|+.|+|+.+
T Consensus 210 ~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~ 244 (419)
T KOG2120|consen 210 SKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMC 244 (419)
T ss_pred HhhhhccccccccCcHHHHHHhccccceeeccccc
Confidence 34455555555555555555555555555555543
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.12 E-value=4.5e-06 Score=72.39 Aligned_cols=120 Identities=22% Similarity=0.200 Sum_probs=72.7
Q ss_pred cEEEccCCCCCCCCCc---CCcccEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccCchhhhhcccCCCCCcccccc
Q 041121 41 KTLTSHSCYLRPLSNI---SSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQ 117 (574)
Q Consensus 41 ~~L~l~~n~l~~~~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~ 117 (574)
+.++|.+.++..+..+ ......+||++|.+. .-..|.+++.|.+|.|++|+|+.+-|. +.
T Consensus 22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~-L~-------------- 84 (233)
T KOG1644|consen 22 RELDLRGLKIPVIENLGATLDQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPD-LD-------------- 84 (233)
T ss_pred cccccccccccchhhccccccccceecccccchh--hcccCCCccccceEEecCCcceeeccc-hh--------------
Confidence 3455555555444222 245556677777664 224566777788888888877744442 11
Q ss_pred ccccccccccCcEEEccCCcccccCC--CCCCCCCCCEEEccCccccccc---chhhhccCCCCEEEccC
Q 041121 118 NMSSGCLKNSLESLHLEVNHFTGPIP--DLGGFSSMKRLYLSDNLLNGTI---NKSIGQIFKLEITCLSQ 182 (574)
Q Consensus 118 ~~~~~~l~~~L~~L~L~~n~l~~~~~--~l~~l~~L~~L~L~~n~i~~~~---~~~~~~l~~L~~L~Ls~ 182 (574)
.-+|+ |+.|.+.+|++..... .++.+|+|++|.+-+|.++... .-.+..+++|++||+.+
T Consensus 85 ----~~~p~-l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 85 ----TFLPN-LKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ----hhccc-cceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 12455 7788888887765333 2777788888888777775322 12355677777777765
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.4e-06 Score=55.15 Aligned_cols=39 Identities=21% Similarity=0.337 Sum_probs=33.2
Q ss_pred CCCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCC
Q 041121 12 HSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPL 53 (574)
Q Consensus 12 ~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 53 (574)
++|++|++++|+|++++. .+++|++|++|++++|+++++
T Consensus 1 ~~L~~L~l~~N~i~~l~~---~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPP---ELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp TT-SEEEETSSS-SSHGG---HGTTCTTSSEEEETSSCCSBE
T ss_pred CcceEEEccCCCCcccCc---hHhCCCCCCEEEecCCCCCCC
Confidence 589999999999999876 689999999999999998865
|
... |
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.09 E-value=5.3e-06 Score=71.92 Aligned_cols=126 Identities=20% Similarity=0.189 Sum_probs=97.1
Q ss_pred CCcEEECCCCCCCCCCchhhhcC-CCCCCcEEEccCCCCCCCCCcC--CcccEEEccCCcCCCCCCccccCCCCCCEEEc
Q 041121 13 SLRYLNLEENNLANCSDWFQVIG-KLHSLKTLTSHSCYLRPLSNIS--SNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSL 89 (574)
Q Consensus 13 ~L~~L~Ls~n~i~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 89 (574)
+=+.++|.+.++..+.. ++ -+.+...+||++|.+..+..+. +.|.+|.+++|+|+.+.|.--.-+++|+.|.|
T Consensus 20 ~e~e~~LR~lkip~ien----lg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~L 95 (233)
T KOG1644|consen 20 RERELDLRGLKIPVIEN----LGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLIL 95 (233)
T ss_pred cccccccccccccchhh----ccccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEe
Confidence 35778888888776632 22 2457788999999999886665 89999999999999877776677899999999
Q ss_pred cCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccccCCC----CCCCCCCCEEEccCccc
Q 041121 90 MFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPD----LGGFSSMKRLYLSDNLL 161 (574)
Q Consensus 90 ~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~----l~~l~~L~~L~L~~n~i 161 (574)
.+|.|..... +. .+..+|+ |++|.+-+|..+....- +..+|+|+.||+.+-.-
T Consensus 96 tnNsi~~l~d--l~----------------pLa~~p~-L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 96 TNNSIQELGD--LD----------------PLASCPK-LEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred cCcchhhhhh--cc----------------hhccCCc-cceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 9998873211 11 4566887 99999999998864432 77899999999986443
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.09 E-value=5.2e-08 Score=88.99 Aligned_cols=154 Identities=21% Similarity=0.143 Sum_probs=101.5
Q ss_pred cCcEEEccCCcccccC-CC-CCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcC
Q 041121 127 SLESLHLEVNHFTGPI-PD-LGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRF 204 (574)
Q Consensus 127 ~L~~L~L~~n~l~~~~-~~-l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~ 204 (574)
+||+|||+...++... .. +..+.+|+.|.+.++++.+.+...+....+|+.|+++.+. .|...-....+..
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s-------G~t~n~~~ll~~s 258 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS-------GFTENALQLLLSS 258 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccc-------ccchhHHHHHHHh
Confidence 4888888888777422 22 6778888888888888888888888888889988888753 1111112233677
Q ss_pred CCCCCeEeccCCcccCCCCC-----CCCCCcEEEcCCCccc---ccccccccCCCCccEEECCCCC-CCCCCCcchhcCC
Q 041121 205 GTSNPGIDISSNHFEGPIPP-----LPSNSSFLNLSKNRFS---RSISLCSISGSKLTYIDLSSNL-LSGKLPDCWWMFD 275 (574)
Q Consensus 205 ~~~L~~L~l~~n~l~~~~~~-----~~~~L~~L~L~~n~i~---~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~ 275 (574)
|+.|..|+++-|.+...... .-++++.|+|++.+=. .-...-...+|++.+|||++|- ++......|..++
T Consensus 259 cs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~ 338 (419)
T KOG2120|consen 259 CSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFN 338 (419)
T ss_pred hhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcc
Confidence 88888888888877654322 2467777877766321 1111112366778888887653 4443444566777
Q ss_pred CCcEEEccCccc
Q 041121 276 SLVILDLGNNSF 287 (574)
Q Consensus 276 ~L~~L~L~~N~l 287 (574)
.|++|.++.+..
T Consensus 339 ~L~~lSlsRCY~ 350 (419)
T KOG2120|consen 339 YLQHLSLSRCYD 350 (419)
T ss_pred hheeeehhhhcC
Confidence 777777777763
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.4e-06 Score=79.92 Aligned_cols=85 Identities=19% Similarity=0.184 Sum_probs=59.1
Q ss_pred CCCCCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCC-CCc---CCcccEEEccCCcCCC-CCCccccCCCCC
Q 041121 10 RLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPL-SNI---SSNFVSIDLSFNQLQG-SIPDSSQHMVYL 84 (574)
Q Consensus 10 ~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~---~~~L~~L~Ls~n~i~~-~~~~~~~~l~~L 84 (574)
.+++++.+||.+|.|++...+..-+.++|.|++|+++.|++... ..+ ..+|++|.|.+..+.- .....+..+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 46678888888888887755555567788888888888887766 222 2578888887776642 234455677788
Q ss_pred CEEEccCCcC
Q 041121 85 EHLSLMFNEL 94 (574)
Q Consensus 85 ~~L~L~~n~l 94 (574)
+.|.++.|.+
T Consensus 149 telHmS~N~~ 158 (418)
T KOG2982|consen 149 TELHMSDNSL 158 (418)
T ss_pred hhhhhccchh
Confidence 8887777743
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.9e-06 Score=77.94 Aligned_cols=191 Identities=17% Similarity=0.063 Sum_probs=104.8
Q ss_pred hcCCCCCCcEEEccCCCCCCC--------CCcCCcccEEEccCCcCCCC----CC---------ccccCCCCCCEEEccC
Q 041121 33 VIGKLHSLKTLTSHSCYLRPL--------SNISSNFVSIDLSFNQLQGS----IP---------DSSQHMVYLEHLSLMF 91 (574)
Q Consensus 33 ~~~~l~~L~~L~l~~n~l~~~--------~~~~~~L~~L~Ls~n~i~~~----~~---------~~~~~l~~L~~L~L~~ 91 (574)
++-+|++|+..+||+|.+..- ..-...|.+|.|++|.+.-+ +. +-...-|.|++.....
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 444555555555555544432 11124555555555554321 11 1223557788888888
Q ss_pred CcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccccC------CCCCCCCCCCEEEccCccccc--
Q 041121 92 NELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPI------PDLGGFSSMKRLYLSDNLLNG-- 163 (574)
Q Consensus 92 n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~------~~l~~l~~L~~L~L~~n~i~~-- 163 (574)
|++. ..+...... .+..-.. |+.+.+.+|.|.... ..+..+.+|+.||+.+|-++-
T Consensus 167 NRle-ngs~~~~a~--------------~l~sh~~-lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~g 230 (388)
T COG5238 167 NRLE-NGSKELSAA--------------LLESHEN-LKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEG 230 (388)
T ss_pred chhc-cCcHHHHHH--------------HHHhhcC-ceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhh
Confidence 8776 233222211 2222334 777777777765321 114456788888888887652
Q ss_pred --ccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCC------C----CCCCCCcE
Q 041121 164 --TINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPI------P----PLPSNSSF 231 (574)
Q Consensus 164 --~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~------~----~~~~~L~~ 231 (574)
....++..++.|+.|.+.+|-++.-....+. ........++|..|-..+|...+.. + ..++-|..
T Consensus 231 S~~La~al~~W~~lrEL~lnDClls~~G~~~v~---~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~ 307 (388)
T COG5238 231 SRYLADALCEWNLLRELRLNDCLLSNEGVKSVL---RRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVD 307 (388)
T ss_pred HHHHHHHhcccchhhhccccchhhccccHHHHH---HHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHH
Confidence 3445566677788888887776643322222 1222345567777777777665421 1 12566777
Q ss_pred EEcCCCccccc
Q 041121 232 LNLSKNRFSRS 242 (574)
Q Consensus 232 L~L~~n~i~~~ 242 (574)
+.+.+|+|...
T Consensus 308 le~ngNr~~E~ 318 (388)
T COG5238 308 LERNGNRIKEL 318 (388)
T ss_pred HHHccCcchhH
Confidence 77888887754
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=98.03 E-value=6.3e-06 Score=53.87 Aligned_cols=40 Identities=25% Similarity=0.449 Sum_probs=28.4
Q ss_pred CCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCccc
Q 041121 149 SSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLA 189 (574)
Q Consensus 149 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~ 189 (574)
++|++|++++|+|+. +|..+.++++|++|++++|+|++++
T Consensus 1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCCCCc
Confidence 467888888888873 4556788888888888888877554
|
... |
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.6e-07 Score=74.61 Aligned_cols=120 Identities=25% Similarity=0.282 Sum_probs=88.6
Q ss_pred cccEEEccCCcCCCCCCcc---ccCCCCCCEEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccC
Q 041121 59 NFVSIDLSFNQLQGSIPDS---SQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEV 135 (574)
Q Consensus 59 ~L~~L~Ls~n~i~~~~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~ 135 (574)
.+-.++|++|.+- .++++ +....+|+..+|++|.+. ..|..|. ..++. ++.|++++
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft------------------~kf~t-~t~lNl~~ 86 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFT------------------IKFPT-ATTLNLAN 86 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHh------------------hccch-hhhhhcch
Confidence 4567788888775 33433 345566777788888887 5555443 23445 88999999
Q ss_pred CcccccCCCCCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCccccccCCch
Q 041121 136 NHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDL 200 (574)
Q Consensus 136 n~l~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~ 200 (574)
|.+++++.+++.++.|+.|+++.|.+. ..|..+..+.++..|+..+|.+..++...+....|..
T Consensus 87 neisdvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~eid~dl~~s~~~al 150 (177)
T KOG4579|consen 87 NEISDVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARAEIDVDLFYSSLPAL 150 (177)
T ss_pred hhhhhchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccccCcHHHhccccHHH
Confidence 999976666999999999999999997 6677777799999999999988877766554444443
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.4e-05 Score=77.18 Aligned_cols=138 Identities=17% Similarity=0.170 Sum_probs=65.8
Q ss_pred cCCCCCCcEEEccCCCCCCCCCcCCcccEEEccCCcCCCCCCccccCCCCCCEEEccCC-cCccCchhhhhcccCCCCCc
Q 041121 34 IGKLHSLKTLTSHSCYLRPLSNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFN-ELEGGIPKFFGNMLNLSDNK 112 (574)
Q Consensus 34 ~~~l~~L~~L~l~~n~l~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~n~ 112 (574)
+..+.+++.|++++|.++.++.++++|++|.+++|.--..+|+.+ .++|++|++++| .+. .+|..+..+. ++.+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~sLe~L~-L~~n~ 123 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPVLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPESVRSLE-IKGSA 123 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCCCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccccccceEE-eCCCC
Confidence 344566777777777666666666667777776643222444433 246777777766 443 4444433321 22222
Q ss_pred cccccccccccccccCcEEEccCCcccccCCCCCCC-CCCCEEEccCcccccccchhhhccCCCCEEEccCC
Q 041121 113 LAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGF-SSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQN 183 (574)
Q Consensus 113 l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~l~~l-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N 183 (574)
... +..+|.+|+.|.+.+++.......-..+ ++|++|++++|... ..|..+. .+|+.|+++.+
T Consensus 124 ~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 124 TDS-----IKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred Ccc-----cccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 111 2223334666665432211000000011 45666666665543 2333332 35666666554
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00017 Score=60.50 Aligned_cols=64 Identities=19% Similarity=0.190 Sum_probs=30.8
Q ss_pred ccccccccccccCcEEEccCCcccccCCC-CCCCCCCCEEEccCcccccccchhhhccCCCCEEEccC
Q 041121 116 IQNMSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQ 182 (574)
Q Consensus 116 l~~~~~~~l~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~ 182 (574)
|++.+|.++.+ |+.+.+.. .+..+... |.++++|+.+.+.++ +..+...+|.++++++.+.+..
T Consensus 3 i~~~~F~~~~~-l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 3 IGNNAFYNCSN-LESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN 67 (129)
T ss_dssp E-TTTTTT-TT---EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS
T ss_pred ECHHHHhCCCC-CCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc
Confidence 44446666666 67666664 44444444 666666777766654 5545555666666666666644
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00049 Score=57.69 Aligned_cols=121 Identities=10% Similarity=0.108 Sum_probs=58.6
Q ss_pred CCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCC
Q 041121 145 LGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPP 224 (574)
Q Consensus 145 l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~ 224 (574)
|.++++|+.+.+.. .+..+...+|.++++|+.+.+.++ +..++...| ..+++
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F---------~~~~~----------------- 59 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAF---------SNCKS----------------- 59 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTT---------TT-TT-----------------
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeee---------ecccc-----------------
Confidence 78888999999875 577677788989988999998875 665554433 33333
Q ss_pred CCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCc
Q 041121 225 LPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNI 301 (574)
Q Consensus 225 ~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 301 (574)
++.+.+.+ .+..+....|..+++++.+.+..+ +.......|.++ +|+.+.+.. .++......|.++++|
T Consensus 60 ----l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 60 ----LESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp -----EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ----cccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 44455543 344444555666677777777654 443445566666 777777665 3333445556555544
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00082 Score=66.56 Aligned_cols=137 Identities=15% Similarity=0.140 Sum_probs=82.5
Q ss_pred ccccCcEEEccCCcccccCCCCCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCC-CCCcccCccccccCCchhh
Q 041121 124 LKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQN-SLTDLANIQIKGKLPDLSS 202 (574)
Q Consensus 124 l~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~~lp~~~~ 202 (574)
+.+ ++.|++++|.++..+ .+ -++|++|.++++.--...|..+ .++|++|++++| .+.. +|
T Consensus 51 ~~~-l~~L~Is~c~L~sLP-~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~s---------LP---- 111 (426)
T PRK15386 51 ARA-SGRLYIKDCDIESLP-VL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISG---------LP---- 111 (426)
T ss_pred hcC-CCEEEeCCCCCcccC-CC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccc---------cc----
Confidence 566 889999988777543 22 2468899988743323555544 357888888887 4432 22
Q ss_pred cCCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEc
Q 041121 203 RFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDL 282 (574)
Q Consensus 203 ~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 282 (574)
..|+.|++..+... .++..+++|+.|.+.++...........-.++|++|++++|... ..|..+. .+|+.|++
T Consensus 112 ---~sLe~L~L~~n~~~-~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~l 184 (426)
T PRK15386 112 ---ESVRSLEIKGSATD-SIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITL 184 (426)
T ss_pred ---cccceEEeCCCCCc-ccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEe
Confidence 24677777665543 24445677888877543311111000011367889999888765 3444333 48888888
Q ss_pred cCcc
Q 041121 283 GNNS 286 (574)
Q Consensus 283 ~~N~ 286 (574)
+.+.
T Consensus 185 s~n~ 188 (426)
T PRK15386 185 HIEQ 188 (426)
T ss_pred cccc
Confidence 7764
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0001 Score=79.06 Aligned_cols=17 Identities=12% Similarity=0.145 Sum_probs=9.4
Q ss_pred cCCCCCCEEEccCCcCc
Q 041121 79 QHMVYLEHLSLMFNELE 95 (574)
Q Consensus 79 ~~l~~L~~L~L~~n~l~ 95 (574)
.++|+|..||+|++.++
T Consensus 170 ~sFpNL~sLDIS~TnI~ 186 (699)
T KOG3665|consen 170 ASFPNLRSLDISGTNIS 186 (699)
T ss_pred hccCccceeecCCCCcc
Confidence 45555555555555554
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0001 Score=66.93 Aligned_cols=56 Identities=20% Similarity=0.145 Sum_probs=26.2
Q ss_pred cccCcEEEccCCcccc--cCCCCCCCCCCCEEEccCcccccc---cchhhhccCCCCEEEcc
Q 041121 125 KNSLESLHLEVNHFTG--PIPDLGGFSSMKRLYLSDNLLNGT---INKSIGQIFKLEITCLS 181 (574)
Q Consensus 125 ~~~L~~L~L~~n~l~~--~~~~l~~l~~L~~L~L~~n~i~~~---~~~~~~~l~~L~~L~Ls 181 (574)
|+ |++|+++.|++.. .++.+..+.+|..|++.+|..+.. -...|.-+++|++|+-.
T Consensus 91 P~-l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 91 PN-LKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred Cc-eeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 44 5555555555442 111244455555555555544321 12335555666655543
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00019 Score=77.00 Aligned_cols=157 Identities=15% Similarity=0.202 Sum_probs=93.9
Q ss_pred hhcCCCCCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCC---CC-------c---------CCcccEEEccC
Q 041121 7 RSLRLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPL---SN-------I---------SSNFVSIDLSF 67 (574)
Q Consensus 7 ~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~-------~---------~~~L~~L~Ls~ 67 (574)
.+..-.++...++.+........ +.+.+.. |+.|.+.+-....- .. + ..+|++||+++
T Consensus 55 ~~~~~f~ltki~l~~~~~~~~~~--~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G 131 (699)
T KOG3665|consen 55 RIIRKFNLTKIDLKNVTLQHQTL--EMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISG 131 (699)
T ss_pred hhhhhheeEEeeccceecchhHH--HHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccc
Confidence 34445567777777766554411 2344444 66666654322111 00 0 14788888877
Q ss_pred CcCC-CCCCccc-cCCCCCCEEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccccCCCC
Q 041121 68 NQLQ-GSIPDSS-QHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDL 145 (574)
Q Consensus 68 n~i~-~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~l 145 (574)
...- ..-|..+ ..+|.|++|.+++-.+.. +.|.. ...++|+ |..||+++.+++.. .++
T Consensus 132 ~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~---~dF~~---------------lc~sFpN-L~sLDIS~TnI~nl-~GI 191 (699)
T KOG3665|consen 132 SELFSNGWPKKIGTMLPSLRSLVISGRQFDN---DDFSQ---------------LCASFPN-LRSLDISGTNISNL-SGI 191 (699)
T ss_pred cchhhccHHHHHhhhCcccceEEecCceecc---hhHHH---------------HhhccCc-cceeecCCCCccCc-HHH
Confidence 5432 1122222 457888888887655542 22333 4556777 88888888888744 447
Q ss_pred CCCCCCCEEEccCccccc-ccchhhhccCCCCEEEccCCCCC
Q 041121 146 GGFSSMKRLYLSDNLLNG-TINKSIGQIFKLEITCLSQNSLT 186 (574)
Q Consensus 146 ~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~N~l~ 186 (574)
+.+++|++|.+.+-.+.. ..-..+.++++|+.||+|.....
T Consensus 192 S~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~ 233 (699)
T KOG3665|consen 192 SRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN 233 (699)
T ss_pred hccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccc
Confidence 788888888888766653 23345667888888888876544
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.91 E-value=7.2e-05 Score=72.18 Aligned_cols=80 Identities=13% Similarity=0.110 Sum_probs=38.2
Q ss_pred CCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCC-CCCC-----CCcCCcccEEEccCC-cCCCCCCc-cccCCCCC
Q 041121 13 SLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCY-LRPL-----SNISSNFVSIDLSFN-QLQGSIPD-SSQHMVYL 84 (574)
Q Consensus 13 ~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-----~~~~~~L~~L~Ls~n-~i~~~~~~-~~~~l~~L 84 (574)
.|+.|.+.|+.=......-..-..++++++|++.+|. +++. ....+.|++|++..| .|+...-+ -...+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 4556666655422221111133456666666666664 2222 333456666666653 33322222 22356666
Q ss_pred CEEEccCC
Q 041121 85 EHLSLMFN 92 (574)
Q Consensus 85 ~~L~L~~n 92 (574)
++|+++.+
T Consensus 219 ~~lNlSwc 226 (483)
T KOG4341|consen 219 KYLNLSWC 226 (483)
T ss_pred HHhhhccC
Confidence 66666544
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.00013 Score=66.66 Aligned_cols=98 Identities=17% Similarity=0.044 Sum_probs=53.4
Q ss_pred CCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCCC-CCCCcEEEcCCCcccccccc-cccCC
Q 041121 173 FKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPL-PSNSSFLNLSKNRFSRSISL-CSISG 250 (574)
Q Consensus 173 ~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~L~~n~i~~~~~~-~~~~~ 250 (574)
.+.+.|+.-++.|++|+. ...++.|+.|.++-|+++...|-. +..|++|+|..|.|..+... .+.++
T Consensus 19 ~~vkKLNcwg~~L~DIsi-----------c~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknl 87 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISI-----------CEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNL 87 (388)
T ss_pred HHhhhhcccCCCccHHHH-----------HHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcC
Confidence 344455555555554432 234445555555555554433322 45666677777766655442 23366
Q ss_pred CCccEEECCCCCCCCCCCc-----chhcCCCCcEEE
Q 041121 251 SKLTYIDLSSNLLSGKLPD-----CWWMFDSLVILD 281 (574)
Q Consensus 251 ~~L~~L~L~~n~l~~~~~~-----~~~~l~~L~~L~ 281 (574)
++|+.|.|..|.-.+..+. .+..+++|+.||
T Consensus 88 psLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 88 PSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred chhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 7777777777765544332 355667777765
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.00012 Score=66.80 Aligned_cols=105 Identities=19% Similarity=0.159 Sum_probs=78.2
Q ss_pred cCCCCCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCCCCc--CCcccEEEccCCcCCCCC-CccccCCCCCC
Q 041121 9 LRLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNI--SSNFVSIDLSFNQLQGSI-PDSSQHMVYLE 85 (574)
Q Consensus 9 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~ 85 (574)
+.+.+.+.|+.-|+.++++. -..+++.|++|.|+-|+|+.+..+ +++|++|.|..|.|.... -..+.++|+|+
T Consensus 16 sdl~~vkKLNcwg~~L~DIs----ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 16 SDLENVKKLNCWGCGLDDIS----ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred hHHHHhhhhcccCCCccHHH----HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 44667888999999998883 246899999999999999988444 479999999999987432 13457899999
Q ss_pred EEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEE
Q 041121 86 HLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLH 132 (574)
Q Consensus 86 ~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~ 132 (574)
+|.|..|.-.+..+...... .+..+|+ |++||
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~--------------VLR~LPn-LkKLD 123 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRK--------------VLRVLPN-LKKLD 123 (388)
T ss_pred hHhhccCCcccccchhHHHH--------------HHHHccc-chhcc
Confidence 99999887766555433322 4555666 77664
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.00018 Score=69.57 Aligned_cols=63 Identities=17% Similarity=0.122 Sum_probs=34.1
Q ss_pred CCCCcEEEcCCCcccccc--cccccCCCCccEEECCCCCCCCCC-----CcchhcCCCCcEEEccCcccc
Q 041121 226 PSNSSFLNLSKNRFSRSI--SLCSISGSKLTYIDLSSNLLSGKL-----PDCWWMFDSLVILDLGNNSFS 288 (574)
Q Consensus 226 ~~~L~~L~L~~n~i~~~~--~~~~~~~~~L~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~L~~N~l~ 288 (574)
.+.|+.+++..+...... .....+++.|+.+.++++...... ...-.++..|+.+.+++.+..
T Consensus 345 ~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i 414 (483)
T KOG4341|consen 345 CPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLI 414 (483)
T ss_pred ChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCc
Confidence 345555555555433222 111226677888888877643221 122345667788888877654
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.0042 Score=56.71 Aligned_cols=88 Identities=22% Similarity=0.213 Sum_probs=62.5
Q ss_pred cccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCC--cCcccCCccccCCCCCCEEeCCCCccccc-CCCCccCCCC
Q 041121 425 STLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRN--HLTGQNSPKIGQLKSLDFLDLSRNQLVGG-IPSSLSPLSV 501 (574)
Q Consensus 425 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~~L~~L~L~~N~i~~~-~~~~l~~l~~ 501 (574)
..+..|+.|.+.+.+++.. ..|..+++|++|.++.| ++++-.+.....+++|++|++++|+|+.+ .-..+..+.+
T Consensus 40 d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred ccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 3455677777777777522 45677889999999999 55554454556679999999999998831 1123455667
Q ss_pred CCEEeccCCcCcc
Q 041121 502 LSVMDLSYNNLSG 514 (574)
Q Consensus 502 L~~L~Ls~N~l~~ 514 (574)
|..|++.+|.-+.
T Consensus 118 L~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 118 LKSLDLFNCSVTN 130 (260)
T ss_pred hhhhhcccCCccc
Confidence 8889999988774
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.00019 Score=73.69 Aligned_cols=164 Identities=21% Similarity=0.225 Sum_probs=95.6
Q ss_pred CcEEECCCCCCCCC--CchhhhcCCCCCCcEEEccCCCCCCC--------CCc-CCcccEEEccCCcCCCC----CCccc
Q 041121 14 LRYLNLEENNLANC--SDWFQVIGKLHSLKTLTSHSCYLRPL--------SNI-SSNFVSIDLSFNQLQGS----IPDSS 78 (574)
Q Consensus 14 L~~L~Ls~n~i~~~--~~~~~~~~~l~~L~~L~l~~n~l~~~--------~~~-~~~L~~L~Ls~n~i~~~----~~~~~ 78 (574)
+..|.|.+|.+.+. ....+++.....|..|++++|.+.+. ... ...+++|++..|.++.. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 67778888887776 44556777888888888888887754 111 14567777777777643 44555
Q ss_pred cCCCCCCEEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccccC----CC-CCCCCC-CC
Q 041121 79 QHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPI----PD-LGGFSS-MK 152 (574)
Q Consensus 79 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~----~~-l~~l~~-L~ 152 (574)
.....++.++++.|.+....-..... . ++. .+..... +++|.+++|.++... .. +...+. +.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~--~--------l~~-~~~~~~~-le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~ 236 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQ--A--------LES-AASPLSS-LETLKLSRCGVTSSSCALLDEVLASGESLLR 236 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhh--h--------hhh-hhccccc-HHHHhhhhcCcChHHHHHHHHHHhccchhhH
Confidence 56777888888877764111000000 0 000 1222344 777777777765311 11 344444 66
Q ss_pred EEEccCcccccc----cchhhhcc-CCCCEEEccCCCCCccc
Q 041121 153 RLYLSDNLLNGT----INKSIGQI-FKLEITCLSQNSLTDLA 189 (574)
Q Consensus 153 ~L~L~~n~i~~~----~~~~~~~l-~~L~~L~Ls~N~l~~l~ 189 (574)
+|++..|++.+. ....+..+ ..+++++++.|.|+.-.
T Consensus 237 el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~ 278 (478)
T KOG4308|consen 237 ELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKG 278 (478)
T ss_pred HHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccc
Confidence 677777776533 23334444 55677777777766433
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.00057 Score=70.22 Aligned_cols=169 Identities=24% Similarity=0.262 Sum_probs=118.4
Q ss_pred hhhhhhcCCCCCcEEECCCCCCCCC--CchhhhcCCC-CCCcEEEccCCCCCCC---------CCcCCcccEEEccCCcC
Q 041121 3 KLLMRSLRLHSLRYLNLEENNLANC--SDWFQVIGKL-HSLKTLTSHSCYLRPL---------SNISSNFVSIDLSFNQL 70 (574)
Q Consensus 3 ~l~~~l~~l~~L~~L~Ls~n~i~~~--~~~~~~~~~l-~~L~~L~l~~n~l~~~---------~~~~~~L~~L~Ls~n~i 70 (574)
.+-+++...+.|+.|++++|.+.+. ....+.+... ..|++|++..|.++.. .. ...++.++++.|.+
T Consensus 106 ~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~-~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 106 ELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEK-NEHLTELDLSLNGL 184 (478)
T ss_pred HHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhc-ccchhHHHHHhccc
Confidence 3557889999999999999999866 3333444444 6788899999998887 12 47899999999988
Q ss_pred CC----CCCcccc----CCCCCCEEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCccccc-
Q 041121 71 QG----SIPDSSQ----HMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGP- 141 (574)
Q Consensus 71 ~~----~~~~~~~----~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~- 141 (574)
.. .++..+. ...++++|.++++.++...-..+.. ++...+..+..|++..|.+.+.
T Consensus 185 ~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~---------------~l~~~~~~~~el~l~~n~l~d~g 249 (478)
T KOG4308|consen 185 IELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDE---------------VLASGESLLRELDLASNKLGDVG 249 (478)
T ss_pred chhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHH---------------HHhccchhhHHHHHHhcCcchHH
Confidence 42 1333333 5788999999999887222111111 2333333256689999988753
Q ss_pred ----CCCCCCC-CCCCEEEccCcccccc----cchhhhccCCCCEEEccCCCCCc
Q 041121 142 ----IPDLGGF-SSMKRLYLSDNLLNGT----INKSIGQIFKLEITCLSQNSLTD 187 (574)
Q Consensus 142 ----~~~l~~l-~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~Ls~N~l~~ 187 (574)
.+.+..+ ..+++++++.|.|... ....+..++.++++.++.|.+.+
T Consensus 250 ~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 250 VEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 2225555 7889999999999754 34556677889999999998774
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.018 Score=31.10 Aligned_cols=19 Identities=37% Similarity=0.410 Sum_probs=9.6
Q ss_pred CCEEEccCcccccccchhhh
Q 041121 151 MKRLYLSDNLLNGTINKSIG 170 (574)
Q Consensus 151 L~~L~L~~n~i~~~~~~~~~ 170 (574)
|++|++++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 3444343
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.016 Score=31.25 Aligned_cols=12 Identities=42% Similarity=0.423 Sum_probs=5.7
Q ss_pred ccEEEccCCcCC
Q 041121 60 FVSIDLSFNQLQ 71 (574)
Q Consensus 60 L~~L~Ls~n~i~ 71 (574)
|++|++++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 444444444444
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.054 Score=27.07 Aligned_cols=14 Identities=43% Similarity=0.681 Sum_probs=6.2
Q ss_pred CCcEEECCCCCCCC
Q 041121 13 SLRYLNLEENNLAN 26 (574)
Q Consensus 13 ~L~~L~Ls~n~i~~ 26 (574)
+|+.|++++|+++.
T Consensus 2 ~L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 2 NLRTLDLSNNRLTS 15 (17)
T ss_dssp T-SEEEETSS--SS
T ss_pred ccCEEECCCCCCCC
Confidence 45556666655544
|
... |
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.032 Score=58.51 Aligned_cols=83 Identities=23% Similarity=0.143 Sum_probs=41.6
Q ss_pred CCCCCcEEECCCCC-CCCCCchhhhcCCCCCCcEEEccCC-CC-CCC-------CCcCCcccEEEccCCc-CCCCCCccc
Q 041121 10 RLHSLRYLNLEENN-LANCSDWFQVIGKLHSLKTLTSHSC-YL-RPL-------SNISSNFVSIDLSFNQ-LQGSIPDSS 78 (574)
Q Consensus 10 ~l~~L~~L~Ls~n~-i~~~~~~~~~~~~l~~L~~L~l~~n-~l-~~~-------~~~~~~L~~L~Ls~n~-i~~~~~~~~ 78 (574)
.++.|+.|.+.++. ++... .......++.|+.|+++++ .. ... ....++|+.|+++++. ++...-..+
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDS-LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hCchhhHhhhcccccCChhh-HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 35667777766664 33321 1224556777777777663 11 111 1222566666666665 443322222
Q ss_pred c-CCCCCCEEEccCCc
Q 041121 79 Q-HMVYLEHLSLMFNE 93 (574)
Q Consensus 79 ~-~l~~L~~L~L~~n~ 93 (574)
. .+++|++|.+.++.
T Consensus 265 ~~~c~~L~~L~l~~c~ 280 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCS 280 (482)
T ss_pred HhhCCCcceEccCCCC
Confidence 2 25666666655444
|
|
| >TIGR00864 PCC polycystin cation channel protein | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.06 Score=64.91 Aligned_cols=35 Identities=34% Similarity=0.516 Sum_probs=20.3
Q ss_pred eccCCcCcccCCCc--chhcccCcccccCCCCCCCCCC
Q 041121 506 DLSYNNLSGKIPTG--TQLQSFNGSVYAGNPELCGLPL 541 (574)
Q Consensus 506 ~Ls~N~l~~~~p~~--~~~~~l~~~~l~~Np~~c~~~l 541 (574)
||++|+|+ .+|.. ..+.++..+++++|||.|+|.+
T Consensus 1 DLSnN~Ls-tLp~g~F~~L~sL~~LdLsgNPw~CDC~L 37 (2740)
T TIGR00864 1 DISNNKIS-TIEEGICANLCNLSEIDLSGNPFECDCGL 37 (2740)
T ss_pred CCCCCcCC-ccChHHhccCCCceEEEeeCCcccccccc
Confidence 35555555 44433 1244555566677777787776
|
Note: this model has been restricted to the amino half because for technical reasons. |
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.62 E-value=0.014 Score=51.17 Aligned_cols=78 Identities=14% Similarity=0.168 Sum_probs=59.8
Q ss_pred CCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCC------CCcCCcccEEEccCC-cCCCCCCccccCCCCCC
Q 041121 13 SLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPL------SNISSNFVSIDLSFN-QLQGSIPDSSQHMVYLE 85 (574)
Q Consensus 13 ~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~ 85 (574)
.++.+|-++..|... ..+.+..++.++.|.+.+|.--+. .+..++|+.|++++| +|+...-..+.++++|+
T Consensus 102 ~IeaVDAsds~I~~e--Gle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYE--GLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred eEEEEecCCchHHHH--HHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 467788888777665 123678889999999999864333 556799999999998 68876667788899999
Q ss_pred EEEccCC
Q 041121 86 HLSLMFN 92 (574)
Q Consensus 86 ~L~L~~n 92 (574)
.|.+.+-
T Consensus 180 ~L~l~~l 186 (221)
T KOG3864|consen 180 RLHLYDL 186 (221)
T ss_pred HHHhcCc
Confidence 9988754
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.50 E-value=0.0048 Score=55.14 Aligned_cols=86 Identities=20% Similarity=0.163 Sum_probs=74.8
Q ss_pred cccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCE
Q 041121 425 STLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSV 504 (574)
Q Consensus 425 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~ 504 (574)
......+.||++.|++. .....|+-++.|..|+++.|.+. ..|..+++...++.+++.+|..+ ..|..+...+.+++
T Consensus 39 ~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKK 115 (326)
T ss_pred hccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence 34556789999999986 56677888899999999999998 78888999999999999999888 77888999999999
Q ss_pred EeccCCcCc
Q 041121 505 MDLSYNNLS 513 (574)
Q Consensus 505 L~Ls~N~l~ 513 (574)
+++-+|.+.
T Consensus 116 ~e~k~~~~~ 124 (326)
T KOG0473|consen 116 NEQKKTEFF 124 (326)
T ss_pred hhhccCcch
Confidence 999999976
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=91.89 E-value=0.11 Score=29.22 Aligned_cols=13 Identities=62% Similarity=0.652 Sum_probs=5.3
Q ss_pred CCCEEeCCCCccc
Q 041121 477 SLDFLDLSRNQLV 489 (574)
Q Consensus 477 ~L~~L~L~~N~i~ 489 (574)
+|++|+|++|+|+
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3344444444444
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=91.89 E-value=0.11 Score=29.22 Aligned_cols=13 Identities=62% Similarity=0.652 Sum_probs=5.3
Q ss_pred CCCEEeCCCCccc
Q 041121 477 SLDFLDLSRNQLV 489 (574)
Q Consensus 477 ~L~~L~L~~N~i~ 489 (574)
+|++|+|++|+|+
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3344444444444
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=91.54 E-value=0.15 Score=28.70 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=12.3
Q ss_pred CCCCEEeCCCCcCcccCCccc
Q 041121 452 VGLVALNLSRNHLTGQNSPKI 472 (574)
Q Consensus 452 ~~L~~L~Ls~N~l~~~~~~~~ 472 (574)
++|+.|+|++|+|+.+.++.|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456666666666665544444
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=91.54 E-value=0.15 Score=28.70 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=12.3
Q ss_pred CCCCEEeCCCCcCcccCCccc
Q 041121 452 VGLVALNLSRNHLTGQNSPKI 472 (574)
Q Consensus 452 ~~L~~L~Ls~N~l~~~~~~~~ 472 (574)
++|+.|+|++|+|+.+.++.|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456666666666665544444
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.06 E-value=0.096 Score=54.93 Aligned_cols=90 Identities=17% Similarity=0.156 Sum_probs=62.6
Q ss_pred hhhcCCCCCcEEECCCC-C-CCCCCch-hhhcCCCCCCcEEEccCCC-CCCC-----CCcCCcccEEEccCCc-CCCC-C
Q 041121 6 MRSLRLHSLRYLNLEEN-N-LANCSDW-FQVIGKLHSLKTLTSHSCY-LRPL-----SNISSNFVSIDLSFNQ-LQGS-I 74 (574)
Q Consensus 6 ~~l~~l~~L~~L~Ls~n-~-i~~~~~~-~~~~~~l~~L~~L~l~~n~-l~~~-----~~~~~~L~~L~Ls~n~-i~~~-~ 74 (574)
.....+++|+.|+++++ . +...+.. ......+++|+.|+++++. +++. ....++|++|.+.+|. ++.. +
T Consensus 208 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl 287 (482)
T KOG1947|consen 208 ALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGL 287 (482)
T ss_pred HHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHH
Confidence 45678899999999973 2 2222211 1134568999999999998 6655 2335799999988886 5543 2
Q ss_pred CccccCCCCCCEEEccCCcCc
Q 041121 75 PDSSQHMVYLEHLSLMFNELE 95 (574)
Q Consensus 75 ~~~~~~l~~L~~L~L~~n~l~ 95 (574)
......+++|++|+++++...
T Consensus 288 ~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 288 VSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred HHHHHhcCcccEEeeecCccc
Confidence 333467889999999977553
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.08 E-value=0.046 Score=48.12 Aligned_cols=82 Identities=23% Similarity=0.216 Sum_probs=58.3
Q ss_pred ccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccC-Ccccc-CCCCCCEEeCCCC-cccccCCCCccCCCCCCEEe
Q 041121 430 IKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQN-SPKIG-QLKSLDFLDLSRN-QLVGGIPSSLSPLSVLSVMD 506 (574)
Q Consensus 430 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~-~l~~L~~L~L~~N-~i~~~~~~~l~~l~~L~~L~ 506 (574)
++.+|-++..|..+--+-+..++.++.|.+.+|+--+.. -+.++ ..++|+.|++++| +|+..--..+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 588899998887665566777888888888888633211 11122 3478999999988 78876666778888888887
Q ss_pred ccCCc
Q 041121 507 LSYNN 511 (574)
Q Consensus 507 Ls~N~ 511 (574)
+.+=.
T Consensus 183 l~~l~ 187 (221)
T KOG3864|consen 183 LYDLP 187 (221)
T ss_pred hcCch
Confidence 76543
|
|
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=87.67 E-value=0.19 Score=27.61 Aligned_cols=20 Identities=25% Similarity=0.157 Sum_probs=10.9
Q ss_pred CCCCCEEEccCCcCccCchh
Q 041121 81 MVYLEHLSLMFNELEGGIPK 100 (574)
Q Consensus 81 l~~L~~L~L~~n~l~~~~~~ 100 (574)
+++|++|+|++|+|+.....
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~ 20 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGAS 20 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHH
Confidence 35677777777777654443
|
... |
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=87.16 E-value=0.27 Score=27.02 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=10.1
Q ss_pred CCCCEEEccCcccccccchh
Q 041121 149 SSMKRLYLSDNLLNGTINKS 168 (574)
Q Consensus 149 ~~L~~L~L~~n~i~~~~~~~ 168 (574)
++|++|+|++|+|++....+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~ 21 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASA 21 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHH
Confidence 55666666666665444333
|
... |
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.61 E-value=0.041 Score=49.43 Aligned_cols=58 Identities=14% Similarity=0.184 Sum_probs=45.2
Q ss_pred ccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCccc
Q 041121 430 IKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLV 489 (574)
Q Consensus 430 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~ 489 (574)
+..|+++.|.+. ..|..+..+..+..+++-+|..+ ..|.+++..++++.+++.+|.+.
T Consensus 67 ~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 67 LVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred HHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence 577788888876 77778887777778887777776 66778888888888888888755
|
|
| >smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily | Back alignment and domain information |
|---|
Probab=81.05 E-value=1.3 Score=24.91 Aligned_cols=16 Identities=25% Similarity=0.441 Sum_probs=9.1
Q ss_pred CCCcEEECCCCCCCCC
Q 041121 12 HSLRYLNLEENNLANC 27 (574)
Q Consensus 12 ~~L~~L~Ls~n~i~~~ 27 (574)
++|++|++++|.|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4556666666665544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 574 | ||||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 6e-29 | ||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 7e-29 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 3e-13 |
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 316 bits (811), Expect = 8e-99
Identities = 152/567 (26%), Positives = 227/567 (40%), Gaps = 91/567 (16%)
Query: 8 SLRLHSLRYLNLEENNLA-NCSDWFQVIGKLHSLKTLTSHSCYL-----RPLSNISSNFV 61
L L SL+YL+L EN D+ G +L L + + S
Sbjct: 265 PLPLKSLQYLSLAENKFTGEIPDFL--SGACDTLTGLDLSGNHFYGAVPPFFGSCS-LLE 321
Query: 62 SIDLSFNQLQGSIPDSS-QHMVYLEHLSLMFNELEGGIPKFFGNM------LNLSDNKL- 113
S+ LS N G +P + M L+ L L FNE G +P+ N+ L+LS N
Sbjct: 322 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 381
Query: 114 -AIIQNMSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNLLNGTINKSIGQ 171
I+ N+ L+ L+L+ N FTG IP L S + L+LS N L+GTI S+G
Sbjct: 382 GPILPNLCQNPKNT-LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS 440
Query: 172 IFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSS- 230
+ KL L N L G++P + + + + N G IP SN +
Sbjct: 441 LSKLRDLKLWLNMLE--------GEIPQ-ELMYVKTLETLILDFNDLTGEIPSGLSNCTN 491
Query: 231 --FLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFS 288
+++LS NR + I L + LS+N SG +P SL+ LDL N F+
Sbjct: 492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551
Query: 289 GRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPF 348
G IP +M N + + +E +F G
Sbjct: 552 GTIPAAMFKQSGKI------AANFIAGKRYVYI---KNDGMKKECHGAGNLLEFQGIRSE 602
Query: 349 QLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSF 408
QL + + +++ G F+N +M
Sbjct: 603 QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM--------------------------- 635
Query: 409 QDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQN 468
L++S N L+G +P+EI + L LNL N ++G
Sbjct: 636 -----------------------FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI 672
Query: 469 SPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTGTQLQSFNGS 528
++G L+ L+ LDLS N+L G IP ++S L++L+ +DLS NNLSG IP Q ++F +
Sbjct: 673 PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPA 732
Query: 529 VYAGNPELCGLPLPNKCRDEESAPGPG 555
+ NP LCG PLP
Sbjct: 733 KFLNNPGLCGYPLPRCDPSNADGYAHH 759
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 253 bits (649), Expect = 3e-75
Identities = 129/527 (24%), Positives = 201/527 (38%), Gaps = 115/527 (21%)
Query: 8 SLRLHSLRYLNLEENNLA-NCSDWFQVIGKLHSLKTLTSHSCYLR---PLSNISSNFVSI 63
L+L+SL L+L N+++ + + LK L + +S N +
Sbjct: 147 GLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV-NLEFL 205
Query: 64 DLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNM-----LNLSDNKLAIIQN 118
D+S N IP L+HL + N+L G + LN+S N+
Sbjct: 206 DVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV--GP 262
Query: 119 MSSGCLKNSLESLHLEVNHFTGPIPD--LGGFSSMKRLYLSDNLLNGTINKSIGQIFKLE 176
+ LK+ L+ L L N FTG IPD G ++ L LS N G + G LE
Sbjct: 263 IPPLPLKS-LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 321
Query: 177 ITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPP----LPSNSSFL 232
LS N+ + + K+ L +D+S N F G +P L ++ L
Sbjct: 322 SLALSSNNFSGELPMDTLLKMRGLKV--------LDLSFNEFSGELPESLTNLSASLLTL 373
Query: 233 NLSKNRFSRSI--SLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGR 290
+LS N FS I +LC + L + L +N +GK+P LV L L N SG
Sbjct: 374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT 433
Query: 291 IPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQL 350
IP S+G L ++ ++L N G+ P +L
Sbjct: 434 IPSSLGSLSKLR-------------------------------DLKLWLNMLEGEIPQEL 462
Query: 351 CQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQD 410
L+ L L N+++G+IP +N T +
Sbjct: 463 MYVKTLETLILDFNDLTGEIPSGLSNCTNLN----------------------------- 493
Query: 411 KVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSP 470
+ LS+N+L G +P+ I L L L LS N +G
Sbjct: 494 ---------------------WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532
Query: 471 KIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIP 517
++G +SL +LDL+ N G IP+++ S ++ N ++GK
Sbjct: 533 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQS----GKIAANFIAGKRY 575
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 234 bits (599), Expect = 3e-68
Identities = 135/534 (25%), Positives = 200/534 (37%), Gaps = 123/534 (23%)
Query: 9 LRLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLR----PLSNIS--SNFVS 62
L L L L L +++ + SL +L L L+++ S
Sbjct: 74 LSLTGLESLFLSNSHI---NGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKF 130
Query: 63 IDLSFNQLQGSIPDSS-QHMVYLEHLSLMFNELEGGIP---KFFGNM-----LNLSDNKL 113
+++S N L S + LE L L N + G L +S NK+
Sbjct: 131 LNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKI 190
Query: 114 AIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIF 173
+ ++ N LE L + N+F+ IP LG S+++ L +S N L+G +++I
Sbjct: 191 S--GDVDVSRCVN-LEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCT 247
Query: 174 KLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPP-LPSNSS-- 230
+L++ +S N G +P S + ++ N F G IP L
Sbjct: 248 ELKLLNISSNQFV--------GPIP--PLPL-KSLQYLSLAENKFTGEIPDFLSGACDTL 296
Query: 231 -FLNLSKNRFSRSI--SLCSISGSKLTYIDLSSNLLSGKLPDCWW-MFDSLVILDLGNNS 286
L+LS N F ++ S S L + LSSN SG+LP L +LDL N
Sbjct: 297 TGLDLSGNHFYGAVPPFFGSC--SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354
Query: 287 FSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKT 346
FSG +P+S+ L S + L SN F G
Sbjct: 355 FSGELPESLTNL------------------------------SASLLTLDLSSNNFSGPI 384
Query: 347 PFQLCQFAF--LQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVH 404
LCQ LQ L L N +GKIP +N + +
Sbjct: 385 LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELV----------------------- 421
Query: 405 HYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHL 464
SL LS N L+G +P + L L L L N L
Sbjct: 422 ---------------------------SLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 454
Query: 465 TGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPT 518
G+ ++ +K+L+ L L N L G IPS LS + L+ + LS N L+G+IP
Sbjct: 455 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 225 bits (575), Expect = 7e-65
Identities = 133/532 (25%), Positives = 207/532 (38%), Gaps = 96/532 (18%)
Query: 22 NNLANCSDWFQVIGKLHSLKTLTSHSCYLR-PLSNISSNF------VSIDLSFNQLQGSI 74
++ N + V + + ++ S L S +SS+ S+ LS + + GS+
Sbjct: 34 SSNKNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSV 93
Query: 75 PDSSQHMVYLEHLSLMFNELEGGIPKF--FGNM-----LNLSDNKLAIIQNMSSGCLKNS 127
L L L N L G + G+ LN+S N L +S G NS
Sbjct: 94 SGFKC-SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNS 152
Query: 128 LESLHLEVNHFTGPIPD----LGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQN 183
LE L L N +G G +K L +S N ++G + + + LE +S N
Sbjct: 153 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSN 210
Query: 184 SLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSS---FLNLSKNRFS 240
+ + I G L +DIS N G S + LN+S N+F
Sbjct: 211 NFST--GIPFLGDCSALQH--------LDISGNKLSGDFSRAISTCTELKLLNISSNQFV 260
Query: 241 RSISLCSISGSKLTYIDLSSNLLSGKLPDC-WWMFDSLVILDLGNNSFSGRIPDSMGFLQ 299
I + L Y+ L+ N +G++PD D+L LDL N F G +P G
Sbjct: 261 GPIPPLPL--KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318
Query: 300 NIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQ-LCQFAFLQV 358
++ + L SN F G+ P L + L+V
Sbjct: 319 LLE-------------------------------SLALSSNNFSGELPMDTLLKMRGLKV 347
Query: 359 LDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKG 418
LDLS N SG++P+ N +A T+ + F GP +
Sbjct: 348 LDLSFNEFSGELPESLTNLSASLL------TLDLSSNNFSGP------------ILPNLC 389
Query: 419 SGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSL 478
++ ++ L L +N G +P + + LV+L+LS N+L+G +G L L
Sbjct: 390 -----QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL 444
Query: 479 DFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTG----TQLQSFN 526
L L N L G IP L + L + L +N+L+G+IP+G T L +
Sbjct: 445 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS 496
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 183 bits (468), Expect = 1e-53
Identities = 79/361 (21%), Positives = 134/361 (37%), Gaps = 69/361 (19%)
Query: 191 IQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSS---FLNLSKNRFSRSISLCS 247
+QIK L + ++ + P D + + G + + + L+LS + + S
Sbjct: 12 LQIKKDLGNPTT-LSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPS 70
Query: 248 ISG--SKLTYIDLSS-NLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQ 304
L ++ + N L G +P L L + + + SG IPD + ++ +
Sbjct: 71 SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV-- 128
Query: 305 FTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLN 364
+ N G P + L + N
Sbjct: 129 -----------------------------TLDFSYNALSGTLPPSISSLPNLVGITFDGN 159
Query: 365 NISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVG--PPYVHHYSFQDKVMPTWKGSGRE 422
ISG IP + +F+ + + + G PP + +
Sbjct: 160 RISGAIPDSYGSFSKLFTS------MTISRNRLTGKIPPTFANLNLAF------------ 201
Query: 423 YRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLD 482
++LS N L G ++L++N L + K+G K+L+ LD
Sbjct: 202 ----------VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF-DLGKVGLSKNLNGLD 250
Query: 483 LSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTGTQLQSFNGSVYAGNPELCGLPLP 542
L N++ G +P L+ L L +++S+NNL G+IP G LQ F+ S YA N LCG PLP
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP 310
Query: 543 N 543
Sbjct: 311 A 311
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 151 bits (384), Expect = 1e-41
Identities = 69/338 (20%), Positives = 121/338 (35%), Gaps = 76/338 (22%)
Query: 54 SNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEG--GIPKFFGNMLNLSDN 111
+ +SS + D G + D+ + +L L L IP N+ L
Sbjct: 22 TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYL--- 78
Query: 112 KLAIIQNMSSGCLKNSLESLHL-EVNHFTGPIPD-LGGFSSMKRLYLSDNLLNGTINKSI 169
L++ +N+ GPIP + + + LY++ ++G I +
Sbjct: 79 -----------------NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL 121
Query: 170 GQIFKLEITCLSQNSLTDL--ANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPP--- 224
QI L S N+L+ +I LP+L I N G IP
Sbjct: 122 SQIKTLVTLDFSYNALSGTLPPSI---SSLPNLVG--------ITFDGNRISGAIPDSYG 170
Query: 225 -LPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLG 283
+ + +S+NR + I + + L ++DLS N+L G + + + L
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPP-TFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229
Query: 284 NNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFH 343
NS + + +G +N+ + L++N+ +
Sbjct: 230 KNSLAFDLG-KVGLSKNLN-------------------------------GLDLRNNRIY 257
Query: 344 GKTPFQLCQFAFLQVLDLSLNNISGKIPK--CFNNFTA 379
G P L Q FL L++S NN+ G+IP+ F
Sbjct: 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDV 295
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 1e-23
Identities = 50/259 (19%), Positives = 93/259 (35%), Gaps = 70/259 (27%)
Query: 10 RLHSLRYLNLEENNL-----ANCSDWFQVIGKLHSLKTLTSHSCYLR---P--LSNISSN 59
+L L YL + N+ + ++ +L TL L P +S++ N
Sbjct: 99 KLTQLHYLYITHTNVSGAIPDF-------LSQIKTLVTLDFSYNALSGTLPPSISSLP-N 150
Query: 60 FVSIDLSFNQLQGSIPDSSQHMVYL-EHLSLMFNELEGGIPKFFGNM----LNLSDNKL- 113
V I N++ G+IPDS L +++ N L G IP F N+ ++LS N L
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLE 210
Query: 114 ----AIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSI 169
+ + + + +HL N + +G ++ L L +N + GT+ + +
Sbjct: 211 GDASVLFGSDKN------TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGL 264
Query: 170 GQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNS 229
Q+ L +++S N+ G I P
Sbjct: 265 TQLKFLHS---------------------------------LNVSFNNLCGEI---PQGG 288
Query: 230 SFLNLSKNRFSRSISLCSI 248
+ + ++ + LC
Sbjct: 289 NLQRFDVSAYANNKCLCGS 307
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 180 bits (459), Expect = 3e-49
Identities = 100/570 (17%), Positives = 192/570 (33%), Gaps = 75/570 (13%)
Query: 11 LHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNIS------SNFVSID 64
+L L+L N L++ +L +L+ L + ++ L + S+ ++
Sbjct: 120 QKNLITLDLSHNGLSSTKL--GTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE 177
Query: 65 LSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNM--------LNLSDNKL-AI 115
LS NQ++ P + L L L +L + + L+LS+++L
Sbjct: 178 LSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTT 237
Query: 116 IQNMSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNLLNGTINKSIGQIFK 174
G +L L L N+ D ++ +L N + + S+ +F
Sbjct: 238 SNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFN 297
Query: 175 LEITCLSQNSLT-DLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSS--- 230
+ L ++ ++ + + D S ++ +++ N G + +
Sbjct: 298 VRYLNLKRSFTKQSISLASLPK-IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLK 356
Query: 231 FLNLSKNRFS----RSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNS 286
+L+LS + S + + S++ S L ++L+ N +S D + L +LDLG N
Sbjct: 357 YLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE 416
Query: 287 FSGRIPDSM-GFLQNIQ------TQFTQQQFNRRTVFIVWELLTTQTFESWEE-RFVRLK 338
+ L+NI ++ Q LT +F + + L+
Sbjct: 417 IGQELTGQEWRGLENIFEIYLSYNKYLQ--------------LTRNSFALVPSLQRLMLR 462
Query: 339 SNKFHG--KTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYT 396
+P L +LDLS NNI+ +
Sbjct: 463 RVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEI-------------- 508
Query: 397 FVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVA 456
+ H + G + L + L L SN + E DL L
Sbjct: 509 ----LDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI 564
Query: 457 LNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSP-LSVLSVMDLSYNNLSGK 515
++L N+L + SL L+L +N + P L+ +D+ +N
Sbjct: 565 IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624
Query: 516 IPTGTQLQSFNGSVYAGNPEL-----CGLP 540
+ ++ + PEL C P
Sbjct: 625 CESIAWFVNWINETHTNIPELSSHYLCNTP 654
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 167 bits (425), Expect = 1e-44
Identities = 84/480 (17%), Positives = 166/480 (34%), Gaps = 51/480 (10%)
Query: 54 SNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNM-----LNL 108
++ +N ++L+ NQL+ + L L + FN + P+ + LNL
Sbjct: 21 DDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNL 80
Query: 109 SDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNLLNGTINK 167
N+L+ + + + N L LHL N + ++ L LS N L+ T
Sbjct: 81 QHNELSQLSDKTFAFCTN-LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG 139
Query: 168 SIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPS 227
+ Q+ L+ LS N + L K +L +S +++SSN + P
Sbjct: 140 TQVQLENLQELLLSNNKIQAL-------KSEELDIFANSSLKKLELSSNQIKEFSPGCFH 192
Query: 228 NSS---FLNLSKNRFSRSIS---LCSISGSKLTYIDLSSNLLSGKLPD--CWWMFDSLVI 279
L L+ + S++ ++ + + + LS++ LS + +L +
Sbjct: 193 AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTM 252
Query: 280 LDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFE----SWEERFV 335
LDL N+ + DS +L ++ ++N L
Sbjct: 253 LDLSYNNLNVVGNDSFAWLPQLEY--FFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ 310
Query: 336 RLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYY 395
+ F L+ L++ N+I G F + S
Sbjct: 311 SISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS--------N 362
Query: 396 TFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLV 455
+F + + +F + L L+ NK++ + L L
Sbjct: 363 SFTSLRTLTNETFVS--------------LAHSPLHILNLTKNKISKIESDAFSWLGHLE 408
Query: 456 ALNLSRNHLTGQNSPK-IGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSG 514
L+L N + + + + L+++ + LS N+ + +S + + L + L L
Sbjct: 409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN 468
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 162 bits (412), Expect = 7e-43
Identities = 99/536 (18%), Positives = 170/536 (31%), Gaps = 97/536 (18%)
Query: 10 RLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNIS----SNFVSIDL 65
R L L++ N ++ ++ KL LK L L LS+ + +N + L
Sbjct: 47 RYSQLTSLDVGFNTISKLEP--ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104
Query: 66 SFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNM-----LNLSDNKLAIIQNMS 120
N +Q + L L L N L + L LS+NK+ +++
Sbjct: 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEE 164
Query: 121 SGCLKN-SLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNLLNGTINKSIGQIF---KL 175
N SL+ L L N P + L+L++ L ++ + + +
Sbjct: 165 LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSI 224
Query: 176 EITCLSQNSLTDLANIQIKG-KLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSS---F 231
LS + L+ +N G K +L+ +D+S N+ + +
Sbjct: 225 RNLSLSNSQLSTTSNTTFLGLKWTNLTM--------LDLSYNNLNVVGNDSFAWLPQLEY 276
Query: 232 LNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKL---------PDCWWMFDSLVILDL 282
L N S + Y++L + + + L L++
Sbjct: 277 FFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNM 336
Query: 283 GNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEE---RFVRLKS 339
+N G + L N++ + + ++ LT +TF S + L
Sbjct: 337 EDNDIPGIKSNMFTGLINLK--YLSLSNSFTSLRT----LTNETFVSLAHSPLHILNLTK 390
Query: 340 NKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVG 399
NK L+VLDL LN I ++ + +
Sbjct: 391 NKISKIESDAFSWLGHLEVLDLGLNEIGQELTG--QEWRGLEN----------------- 431
Query: 400 PPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNL 459
I + LS NK + L L L
Sbjct: 432 ------------------------------IFEIYLSYNKYLQLTRNSFALVPSLQRLML 461
Query: 460 SRNHLTGQNSPK--IGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLS 513
R L +S L++L LDLS N + L L L ++DL +NNL+
Sbjct: 462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 517
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 160 bits (408), Expect = 2e-42
Identities = 102/532 (19%), Positives = 179/532 (33%), Gaps = 66/532 (12%)
Query: 13 SLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNIS----SNFVSIDLSFN 68
S + L D ++ L LR L + S S+D+ FN
Sbjct: 5 SHEVADCSHLKLTQVPDDL-----PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN 59
Query: 69 QLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNM-----LNLSDNKLAIIQNMSSGC 123
+ P+ Q + L+ L+L NEL K F L+L N + I+N
Sbjct: 60 TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK 119
Query: 124 LKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNLLNGTINK--SIGQIFKLEITCL 180
KN L +L L N + +++ L LS+N + ++ I L+ L
Sbjct: 120 QKN-LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178
Query: 181 SQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNS------SFLNL 234
S N + + + + L + +++ + L+L
Sbjct: 179 SSNQIKEFSPGCFHA-IGRLFG--------LFLNNVQLGPSLTEKLCLELANTSIRNLSL 229
Query: 235 SKNRFSRSI--SLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIP 292
S ++ S + + + + LT +DLS N L+ D + L L N+
Sbjct: 230 SNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS 289
Query: 293 DSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEE----RFVRLKSNKFHGKTPF 348
S+ L N++ + + I L S++ + ++ N G
Sbjct: 290 HSLHGLFNVRY--LNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN 347
Query: 349 QLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSF 408
L+ L LS + S F ++ S + + + +F
Sbjct: 348 MFTGLINLKYLSLSNSFTSL-RTLTNETFVSLAH--SPLHILNLTKNKISK---IESDAF 401
Query: 409 QDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVP-EEIMDLVGLVALNLSRNHLTGQ 467
S LG ++ L+L N++ + +E L + + LS N
Sbjct: 402 ----------------SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQL 445
Query: 468 NSPKIGQLKSLDFLDLSRNQL--VGGIPSSLSPLSVLSVMDLSYNNLSGKIP 517
+ SL L L R L V PS PL L+++DLS NN++
Sbjct: 446 TRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIND 497
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 147 bits (373), Expect = 7e-38
Identities = 102/584 (17%), Positives = 175/584 (29%), Gaps = 114/584 (19%)
Query: 11 LHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNIS----SNFVSIDLS 66
L +L+ L L N + I SLK L S ++ S + L+
Sbjct: 144 LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN 203
Query: 67 FNQLQGSIPDS---SQHMVYLEHLSLMFNELEGGIPKFFGNM-------LNLSDNKLAII 116
QL S+ + + +LSL ++L F + L+LS N L ++
Sbjct: 204 NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263
Query: 117 QNMSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNL---------LNGTIN 166
N S L LE LE N+ L G +++ L L + L +
Sbjct: 264 GNDSFAWLPQ-LEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDD 322
Query: 167 KSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPP-- 224
S + LE + N + + + L +L + +S++
Sbjct: 323 FSFQWLKCLEHLNMEDNDIPGI-KSNMFTGLINLKY--------LSLSNSFTSLRTLTNE 373
Query: 225 ----LPSNS-SFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLP-DCWWMFDSLV 278
L + LNL+KN+ S+ S L +DL N + +L W +++
Sbjct: 374 TFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIF 433
Query: 279 ILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLK 338
+ L N + +S + ++Q + L+
Sbjct: 434 EIYLSYNKYLQLTRNSFALVPSLQR-------------------------------LMLR 462
Query: 339 SNKFHG--KTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMT---------QERSSD 387
+P L +LDLS NNI+ +
Sbjct: 463 RVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKH 522
Query: 388 PTIKVYYYTFVGPP-------------YVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLE 434
Y G + F+D L +K ++
Sbjct: 523 ANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKD----------------LFELKIID 566
Query: 435 LSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIG-QLKSLDFLDLSRNQLVGGIP 493
L N LN + V L +LNL +N +T G ++L LD+ N
Sbjct: 567 LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626
Query: 494 SSLSPLSVLSVMDLSYNNLSGKIPTGTQLQSFNGSVYAGNPELC 537
S ++ ++ + LS T V + C
Sbjct: 627 SIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDTSSC 670
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 80.4 bits (199), Expect = 5e-16
Identities = 46/297 (15%), Positives = 80/297 (26%), Gaps = 86/297 (28%)
Query: 232 LNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRI 291
+ S + + + + +T ++L+ N L + + L LD+G N+ S
Sbjct: 9 ADCSHLKLT---QVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLE 65
Query: 292 PDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLC 351
P+ L ++ + L+ N+ +
Sbjct: 66 PELCQKLPMLKV-------------------------------LNLQHNELSQLSDKTFA 94
Query: 352 QFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDK 411
L L L N+I F
Sbjct: 95 FCTNLTELHLMSNSIQKIKNNPFVKQKN-------------------------------- 122
Query: 412 VMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTG--QNS 469
+ +L+LS N L+ + L L L LS N +
Sbjct: 123 ------------------LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEE 164
Query: 470 PKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTGTQLQSFN 526
I SL L+LS NQ+ P + L + L+ L + L+ N
Sbjct: 165 LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELAN 221
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 77.7 bits (192), Expect = 3e-15
Identities = 44/274 (16%), Positives = 76/274 (27%), Gaps = 89/274 (32%)
Query: 246 CSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQF 305
C++S D S L+ ++PD + ++ +L+L +N + +
Sbjct: 2 CTVS---HEVADCSHLKLT-QVPD--DLPTNITVLNLTHNQLRRLPAANFTRYSQLT--- 52
Query: 306 TQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNN 365
+ + N P + L+VL+L N
Sbjct: 53 ----------------------------SLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84
Query: 366 ISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRS 425
+S K F
Sbjct: 85 LSQLSDKTFAF------------------------------------------------- 95
Query: 426 TLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSR 485
+ L L SN + + L+ L+LS N L+ QL++L L LS
Sbjct: 96 -CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSN 154
Query: 486 NQLVGGIPSSLS--PLSVLSVMDLSYNNLSGKIP 517
N++ L S L ++LS N + P
Sbjct: 155 NKIQALKSEELDIFANSSLKKLELSSNQIKEFSP 188
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 8e-10
Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 431 KSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVG 490
+ + S KL VP+++ + LNL+ N L + + L LD+ N +
Sbjct: 7 EVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63
Query: 491 GIPSSLSPLSVLSVMDLSYNNLSGKIPT 518
P L +L V++L +N LS
Sbjct: 64 LEPELCQKLPMLKVLNLQHNELSQLSDK 91
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 162 bits (411), Expect = 5e-43
Identities = 73/537 (13%), Positives = 155/537 (28%), Gaps = 128/537 (23%)
Query: 11 LHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNISSNFVSIDLSFNQL 70
+ NN+ S + +L L+ + NI + + + + Q
Sbjct: 182 TLKDTQIGQLSNNITFVSKA---VMRLTKLRQFYMGNSPFVA-ENICEAWENENSEYAQQ 237
Query: 71 QGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNM-----LNLSDNKL-------AIIQN 118
+ ++ L + + +P F + +N++ N+ Q
Sbjct: 238 YKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQA 297
Query: 119 MSSGCLKNSLESLHLEVNHF-TGPIP-DLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLE 176
++ + ++ +++ N+ T P+ L + L N L G + + G KL
Sbjct: 298 LADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLA 356
Query: 177 ITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSF----- 231
L+ N +T++ G + + + + N + IP + S
Sbjct: 357 SLNLAYNQITEIPA-NFCGFTEQVEN--------LSFAHNKLKY-IPNIFDAKSVSVMSA 406
Query: 232 LNLSKNRFS-------RSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGN 284
++ S N + G ++ I+LS+N +S + + L ++L
Sbjct: 407 IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG 466
Query: 285 NSFSG-------RIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRL 337
N + ++ + + + L
Sbjct: 467 NMLTEIPKNSLKDENENFKNTYLLTS-------------------------------IDL 495
Query: 338 KSNKFHG-KTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYT 396
+ NK F+ +L +DLS N+ S P N + +
Sbjct: 496 RFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLK--------------- 539
Query: 397 FVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVA 456
G+ + N+ PE I L
Sbjct: 540 -----------------------------GFGIRNQRDAQGNRTLREWPEGITLCPSLTQ 570
Query: 457 LNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLS 513
L + N + + KI ++ LD+ N + S + P + L Y+
Sbjct: 571 LQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 156 bits (397), Expect = 4e-41
Identities = 62/556 (11%), Positives = 158/556 (28%), Gaps = 104/556 (18%)
Query: 10 RLHSLRYLNLEENNLANCSDWF--QVIGKLHSLKTLTSHSCYLRPLS------NISSNFV 61
+L L L L + F + I S + + + S+ +
Sbjct: 103 QLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLI 162
Query: 62 SIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNM-----LNLSDNKLAII 116
++ + Q SI SS+ + + + N + + K + + ++
Sbjct: 163 KDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPF--- 218
Query: 117 QNMSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNLLNGTINKSIGQIFKL 175
+ + + E+ + E + + + + + + + ++
Sbjct: 219 ---VAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEM 275
Query: 176 EITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNP-GIDISSNHF-EGPIPPLPSNSS--- 230
++ ++ N Q+K L+ I I N+ P+
Sbjct: 276 QLINVACNRGISG--EQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLG 333
Query: 231 FLNLSKNRFSRSISLCSISG-SKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSG 289
L N+ + + KL ++L+ N ++ + + + L +N
Sbjct: 334 MLECLYNQLEGKLP--AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY 391
Query: 290 RIPD--SMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKT- 346
IP+ + + + N+
Sbjct: 392 -IPNIFDAKSVSVMSA-------------------------------IDFSYNEIGSVDG 419
Query: 347 ------PFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGP 400
+ + ++LS N IS + F+ + ++ +I +
Sbjct: 420 KNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS-------SINLMGNMLTEI 472
Query: 401 PYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMD--LVGLVALN 458
P + L+ S++L NKL + ++ L LV ++
Sbjct: 473 PKNSLKDENENF------------KNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGID 519
Query: 459 LSRNHLTGQNSPKIGQLKSL------DFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNL 512
LS N + + +L + D N+ + P ++ L+ + + N++
Sbjct: 520 LSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578
Query: 513 SGKIPTG--TQLQSFN 526
+ + +
Sbjct: 579 RK-VNEKITPNISVLD 593
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 141 bits (358), Expect = 6e-36
Identities = 65/588 (11%), Positives = 144/588 (24%), Gaps = 165/588 (28%)
Query: 10 RLHSLRYLNLEENNLA--------------------NCSDWFQVIGKLHSLKTLTSHSCY 49
+ L+LE + + + + + S
Sbjct: 79 SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138
Query: 50 LRPLSNISSNFVS-------IDLSFNQLQG-----SIPDSSQHMVYLEHLSLMFNELEGG 97
+ + FV DL + + SI SS+ + + + N +
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT-F 197
Query: 98 IPKFFGNM-----LNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSM 151
+ K + + ++ + + + E+ + E +
Sbjct: 198 VSKAVMRLTKLRQFYMGNSPF------VAENICEAWENENSEYAQQYKTEDLKWDNLKDL 251
Query: 152 KRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSN-PG 210
+ + + + + + ++++ ++ N Q+K L+
Sbjct: 252 TDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISG--EQLKDDWQALADAPVGEKIQI 309
Query: 211 IDISSNHF-EGPIPPLPSNSS---FLNLSKNRFSRSISLCSISG-SKLTYIDLSSNLLSG 265
I I N+ P+ L N+ + + KL ++L+ N ++
Sbjct: 310 IYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQITE 367
Query: 266 KLPDCWWMFDSLVILDLGNNSFSGRIPD--SMGFLQNIQTQFTQQQFNRRTVFIVWELLT 323
+ + + L +N IP+ + +
Sbjct: 368 IPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSA-------------------- 406
Query: 324 TQTFESWEERFVRLKSNKFHGKT-------PFQLCQFAFLQVLDLSLNNISGKIPKCFNN 376
+ N+ + + ++LS N IS + F+
Sbjct: 407 -----------IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFST 455
Query: 377 FTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELS 436
+ ++ S+ L
Sbjct: 456 GSPLS--------------------------------------------------SINLM 465
Query: 437 SNKLNG-------AVPEEIMDLVGLVALNLSRNHLTG-QNSPKIGQLKSLDFLDLSRNQL 488
N L E + L +++L N LT + + L L +DLS N
Sbjct: 466 GNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSF 525
Query: 489 VGGIPSSLSPLSVLSVM------DLSYNNLSGKIPTG----TQLQSFN 526
P+ S L D N + P G L
Sbjct: 526 -SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQ 572
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 9e-28
Identities = 55/386 (14%), Positives = 100/386 (25%), Gaps = 68/386 (17%)
Query: 145 LGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRF 204
L + L L +G + +IGQ+ +LE+ L + + +
Sbjct: 77 LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISAN---- 132
Query: 205 GTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGS-----KLTYIDLS 259
S+ H++ F +L K+ + SI S K T I
Sbjct: 133 -MSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQL 191
Query: 260 SNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVW 319
SN ++ + L +GN+ F +N
Sbjct: 192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENEN------------------- 231
Query: 320 ELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTA 379
+ + + + L +++ K+P
Sbjct: 232 -----------------SEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPE 274
Query: 380 MTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNK 439
M I V + I+ + + N
Sbjct: 275 MQ-------LINVACNRGISGEQ-----------LKDDWQALADAPVGEKIQIIYIGYNN 316
Query: 440 L-NGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSP 498
L V + + L L N L G P G L L+L+ NQ+ +
Sbjct: 317 LKTFPVETSLQKMKKLGMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQITEIPANFCGF 375
Query: 499 LSVLSVMDLSYNNLSGKIPTGTQLQS 524
+ + ++N L IP +S
Sbjct: 376 TEQVENLSFAHNKLKY-IPNIFDAKS 400
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 2e-26
Identities = 57/398 (14%), Positives = 120/398 (30%), Gaps = 73/398 (18%)
Query: 10 RLHSLRYLNLEENNLANCSDW------FQVIGKLHSLKTLTSHSCYLRPLSNISS----- 58
L ++ +N+ N + ++ + L+ +S
Sbjct: 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMK 330
Query: 59 NFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNM-----LNLSDNKL 113
++ +NQL+G +P + + L L+L +N++ F G L+ + NKL
Sbjct: 331 KLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKL 389
Query: 114 AIIQNMSSGCLKNSLESLHLEVNHFTGPI--------PDLGGFSSMKRLYLSDNLLNGTI 165
I N+ + + ++ N P ++ + LS+N ++
Sbjct: 390 KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFP 449
Query: 166 NKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPL 225
+ L L N LT++ +K + + + ID+ N
Sbjct: 450 KELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKN--TYLLTSIDLRFNKLTKLSDDF 507
Query: 226 PSNS----SFLNLSKNRFSRSISLCSISGSKLTYIDLSSNL------LSGKLPDCWWMFD 275
+ + ++LS N FS ++ S L + + + P+ +
Sbjct: 508 RATTLPYLVGIDLSYNSFS-KFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCP 566
Query: 276 SLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFV 335
SL L +G+N + + NI +
Sbjct: 567 SLTQLQIGSNDIRK-VNEK--ITPNISV-------------------------------L 592
Query: 336 RLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKC 373
+K N +C + + L + I C
Sbjct: 593 DIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ-DIRGC 629
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 1e-11
Identities = 16/122 (13%), Positives = 34/122 (27%), Gaps = 6/122 (4%)
Query: 425 STLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSP----KIGQLKSLDF 480
++ G + L L +G VP+ I L L L L + I S +
Sbjct: 78 NSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ 137
Query: 481 LDLSRNQLVGGIPSSLSPLSV--LSVMDLSYNNLSGKIPTGTQLQSFNGSVYAGNPELCG 538
R L ++ + I +++ + + + +
Sbjct: 138 KQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF 197
Query: 539 LP 540
+
Sbjct: 198 VS 199
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 160 bits (407), Expect = 1e-42
Identities = 100/528 (18%), Positives = 178/528 (33%), Gaps = 87/528 (16%)
Query: 11 LHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLR--PLSNISSNFVS---IDL 65
L SL+ L E NLA+ + IG L +LK L ++ L SN + +DL
Sbjct: 99 LSSLQKLVAVETNLASLEN--FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156
Query: 66 SFNQLQGSIPDSSQHMVYLE----HLSLMFNELEGGIPKFFGNM----LNLSDNKLAIIQ 117
S N++Q + + + L L N + P F + L L +N ++
Sbjct: 157 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNV 216
Query: 118 NMSSGCLKNSLESLHLEVNHFTG----PIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIF 173
+ LE L + F D + L + + L ++ + I
Sbjct: 217 MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA-YLDYYLDDII 275
Query: 174 KLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLN 233
L CL+ S L ++ I+ + D S + +++ + F + L
Sbjct: 276 DL-FNCLTNVSSFSLVSVTIER-VKDFS--YNFGWQHLELVNCKFGQFPTLKLKSLKRLT 331
Query: 234 LSKNRFSRSISLCSISGSKLTYIDLSSNLLS--GKLPDCWWMFDSLVILDLGNNSFSGRI 291
+ N+ + S + L ++DLS N LS G + SL LDL N +
Sbjct: 332 FTSNKGGNAFSEVDL--PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-M 388
Query: 292 PDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQ-L 350
+ L+ ++ + + + + F
Sbjct: 389 SSNFLGLEQLEH-------------------------------LDFQHSNLKQMSEFSVF 417
Query: 351 CQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQD 410
L LD+S + FN +++ + SFQ+
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL------------------KMAGNSFQE 459
Query: 411 KVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSP 470
+P + + L + L+LS +L P L L LN+S N+ ++
Sbjct: 460 NFLP-------DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 512
Query: 471 KIGQLKSLDFLDLSRNQLVGGIPSSLSPL-SVLSVMDLSYNNLSGKIP 517
L SL LD S N ++ L S L+ ++L+ N+ +
Sbjct: 513 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 560
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 156 bits (396), Expect = 4e-41
Identities = 78/479 (16%), Positives = 149/479 (31%), Gaps = 49/479 (10%)
Query: 54 SNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKL 113
N+ + ++DLSFN L+ S L+ L L E++ + ++
Sbjct: 24 DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL-------- 75
Query: 114 AIIQNMSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNLLNGTINKSIGQI 172
+ L +L L N G SS+++L + L N IG +
Sbjct: 76 ------------SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123
Query: 173 FKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPP-------L 225
L+ ++ N + + L +L +D+SSN + +
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEH--------LDLSSNKIQSIYCTDLRVLHQM 175
Query: 226 PSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLP-DCWWMFDSLVILDLGN 284
P + L+LS N + I + +L + L +N S + C L + L
Sbjct: 176 PLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 234
Query: 285 NSFSGRIPDSMGFLQNIQT-QFTQQQFNRRTVFIVWELLTTQTFESWEE-RFVRLKSNKF 342
F ++ + R + F L S
Sbjct: 235 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI 294
Query: 343 HGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPY 402
F Q L+L + +T + ++ V P
Sbjct: 295 ERVKDFSYNFG--WQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA----FSEVDLPS 348
Query: 403 VHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRN 462
+ + ++KG + +K L+LS N + + + L L L+ +
Sbjct: 349 LEFLDLSRNGL-SFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHS 406
Query: 463 HLTGQNSPKI-GQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTGT 520
+L + + L++L +LD+S + LS L V+ ++ N+
Sbjct: 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 148 bits (375), Expect = 2e-38
Identities = 93/524 (17%), Positives = 158/524 (30%), Gaps = 104/524 (19%)
Query: 11 LHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNISSNFVSIDLSFNQL 70
L L L L N + + + L SL+ L L
Sbjct: 75 LSHLSTLILTGNPIQSLAL--GAFSGLSSLQKL--------------------VAVETNL 112
Query: 71 QGSIPDSSQHMVYLEHLSLMFNELEGG-IPKFFGNM-----LNLSDNKLAIIQNMSSGCL 124
H+ L+ L++ N ++ +P++F N+ L+LS NK+ I L
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172
Query: 125 KN---SLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINK-SIGQIFKLEITCL 180
SL L +N P + +L L +N + + K I + LE+ L
Sbjct: 173 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL 232
Query: 181 SQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFS 240
+ N++ + EG L+ +
Sbjct: 233 VLGEFRNEGNLE-------------------KFDKSALEGLC---NLTIEEFRLAYLDYY 270
Query: 241 RSISLCSISG-SKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQ 299
+ + + ++ L S + + L+L N F + L+
Sbjct: 271 LDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY--NFGWQHLELVNCKFGQFPTLKLKSLK 328
Query: 300 NIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNK--FHGKTPFQLCQFAFLQ 357
+ FT + + L + L N F G L+
Sbjct: 329 RL--TFTSNKGGNAFSEVDLPSLEF----------LDLSRNGLSFKGCCSQSDFGTTSLK 376
Query: 358 VLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWK 417
LDLS N + F+G + H FQ
Sbjct: 377 YLDLSFNGVITMSS------------------------NFLGLEQLEHLDFQH-----SN 407
Query: 418 GSGREYRSTLGLIKSLE---LSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKI-G 473
S +++L +S A L L L ++ N P I
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 467
Query: 474 QLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIP 517
+L++L FLDLS+ QL P++ + LS L V+++S+NN
Sbjct: 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 511
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 146 bits (370), Expect = 1e-37
Identities = 88/529 (16%), Positives = 163/529 (30%), Gaps = 94/529 (17%)
Query: 13 SLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNISSNFVSIDLSFNQLQG 72
S + L+L N L + L+ L DLS ++Q
Sbjct: 29 STKNLDLSFNPLRHLGS--YSFFSFPELQVL--------------------DLSRCEIQT 66
Query: 73 SIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNM-----LNLSDNKLAIIQNMSSGCLKNS 127
+ Q + +L L L N ++ F + L + LA ++N G LK
Sbjct: 67 IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT- 125
Query: 128 LESLHLEVNHFTG-PIPD-LGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSL 185
L+ L++ N +P+ ++++ L LS N + + + ++ + LS
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS---- 181
Query: 186 TDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLP----SNSSFLNLSKNRFSR 241
DL+ + P + + +N + + L F
Sbjct: 182 LDLSLNPMNFIQPGAFKEIRLHK--LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239
Query: 242 SISLCSISGS---KLTYIDLSSNLLS------GKLPDCWWMFDSLVILDLGNNSFSGRIP 292
+L S L + + L+ + D + ++ L + +
Sbjct: 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD 299
Query: 293 DSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQ 352
S N Q + + F +L + + RL G F
Sbjct: 300 FS----YNFGWQHLELVNCKFGQFPTLKLKSLK----------RLTFTSNKGGNAFSEVD 345
Query: 353 FAFLQVLDLSLNNIS--GKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQD 410
L+ LDLS N +S G + T++ S + F+G
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG----------- 394
Query: 411 KVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEI-MDLVGLVALNLSRNHLTGQNS 469
L ++ L+ + L + + L L+ L++S H +
Sbjct: 395 ----------------LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438
Query: 470 PKIGQLKSLDFLDLSRNQLVGGI-PSSLSPLSVLSVMDLSYNNLSGKIP 517
L SL+ L ++ N P + L L+ +DLS L P
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 130 bits (328), Expect = 4e-32
Identities = 84/562 (14%), Positives = 168/562 (29%), Gaps = 132/562 (23%)
Query: 11 LHSLRYLNLEENNLANCSDWFQVIGKLHSLKTL--------TSHSCYLRPLSNISSNFVS 62
L +L+ LN+ N + + + L +L+ L + + LR L + +S
Sbjct: 123 LKTLKELNVAHNLIQSFKLP-EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181
Query: 63 IDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGN------MLNLSDNKLAII 116
+DLS N + P + + + L L+L N + K + L +
Sbjct: 182 LDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240
Query: 117 QNMS-------SGCLKNSLESLHLE-VNHFTGPIPDL-GGFSSMKRLYLSDNLLNGTINK 167
N+ G ++E L ++++ I DL +++ L + +
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF 300
Query: 168 SIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPG----------IDISSNH 217
S F + L +++K + N +D+S N
Sbjct: 301 S--YNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG 358
Query: 218 --FEGPIPPLPSNSS---FLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLP-DCW 271
F+G ++ +L+LS N ++S + +L ++D + L +
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 417
Query: 272 WMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWE 331
+L+ LD+ + L +++
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV---------------------------- 449
Query: 332 ERFVRLKSNKFHGK-TPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTI 390
+++ N F P + L LDLS + P FN+ ++
Sbjct: 450 ---LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS----------- 495
Query: 391 KVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMD 450
++ L +S N
Sbjct: 496 ---------------------------------------LQVLNMSHNNFFSLDTFPYKC 516
Query: 451 LVGLVALNLSRNHLTGQNSPKIGQL-KSLDFLDLSRNQLVGGIPSS--LSPLSVLSVMDL 507
L L L+ S NH+ ++ SL FL+L++N L + + +
Sbjct: 517 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLV 576
Query: 508 SYNNLSGKIPT---GTQLQSFN 526
+ P+ G + S N
Sbjct: 577 EVERMECATPSDKQGMPVLSLN 598
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 1e-28
Identities = 73/536 (13%), Positives = 147/536 (27%), Gaps = 121/536 (22%)
Query: 11 LHSLRYLNLEENNLAN-CSDWFQVIGKLHSLK-TLTSHSCYLR---PLSNISSNFVSIDL 65
L +L +L+L N + + +V+ ++ L +L + P + + L
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTL 207
Query: 66 SFNQLQGSIPDSSQH-MVYLEHLSLMFNELEGGIPKFFG-----------NMLNLSDNKL 113
N ++ + + LE L+ E + L
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267
Query: 114 AIIQNMSSGCLKN--SLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQ 171
+ ++ S L + D + L L + +
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNFGWQHLELVNCKFGQFPTLKLKS 326
Query: 172 IFKLEITCLSQNSLT-----------DLANIQIKGKLPDLSSRFGTSNP-GIDISSNHFE 219
+ +L T + DL+ + K S FGT++ +D+S N
Sbjct: 327 LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386
Query: 220 GPIPPLPSNSS--FLNLSKNRFSRSISLCSISG-SKLTYIDLSSNLLSGKLPDCWWMFDS 276
L+ + + L Y+D+S + S
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446
Query: 277 LVILDLGNNSFSGRI-PDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFV 335
L +L + NSF PD L+N+ +
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTF-------------------------------L 475
Query: 336 RLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYY 395
L + +P + LQVL++S NN + +
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS---------------- 519
Query: 396 TFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVG-L 454
++ L+ S N + + +E+ L
Sbjct: 520 ----------------------------------LQVLDYSLNHIMTSKKQELQHFPSSL 545
Query: 455 VALNLSRNHLTG--QNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLS 508
LNL++N ++ + +K L + ++ PS + VLS+ +++
Sbjct: 546 AFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSL-NIT 600
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 7e-15
Identities = 50/309 (16%), Positives = 85/309 (27%), Gaps = 88/309 (28%)
Query: 212 DISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCW 271
+F LP ++ L+LS N S S +L +DLS + +
Sbjct: 13 QCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 72
Query: 272 WMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWE 331
L L L N + L ++Q
Sbjct: 73 QSLSHLSTLILTGNPIQSLALGAFSGLSSLQK---------------------------- 104
Query: 332 ERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNI-SGKIPKCFNNFTAMTQERSSDPTI 390
+ F + L+ L+++ N I S K+P+ F+N T
Sbjct: 105 ---LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN----------- 150
Query: 391 KVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMD 450
++ L+LSSNK+ ++
Sbjct: 151 ---------------------------------------LEHLDLSSNKIQSIYCTDLRV 171
Query: 451 LVGL----VALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPS-SLSPLSVLSVM 505
L + ++L+LS N + P + L L L N + + L+ L V
Sbjct: 172 LHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVH 230
Query: 506 DLSYNNLSG 514
L
Sbjct: 231 RLVLGEFRN 239
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 140 bits (356), Expect = 8e-36
Identities = 86/526 (16%), Positives = 161/526 (30%), Gaps = 114/526 (21%)
Query: 11 LHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSN------ISSNFVSID 64
+L L L N++++ LK L + + LS + +S++
Sbjct: 128 QKTLESLYLGSNHISSIKL--PKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLN 185
Query: 65 LSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGN-------MLNLSDNKL-AII 116
L+ N + I + + L+ + I K N + D I
Sbjct: 186 LNGNDIA-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDIS 244
Query: 117 QNMSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNLLNGTINKSIGQIFKL 175
+ G + S+ES++L+ ++F + FS ++ L L+ L+ + + + L
Sbjct: 245 PAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTL 303
Query: 176 EITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLP----SNSSF 231
+ LS N +L I P L+ + I N + N
Sbjct: 304 KKLVLSANKFENLCQISASN-FPSLTH--------LSIKGNTKRLELGTGCLENLENLRE 354
Query: 232 LNLSKNRFSRS-ISLCSISG-SKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSG 289
L+LS + S + S L ++LS N + + L +LDL
Sbjct: 355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV 414
Query: 290 RIPDS-MGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPF 348
+ S L ++ + L + +
Sbjct: 415 KDAQSPFQNLHLLKV-------------------------------LNLSHSLLDISSEQ 443
Query: 349 QLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSF 408
LQ L+L N+ + N+ + +
Sbjct: 444 LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGR-------------------------- 477
Query: 409 QDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQN 468
++ L LS L+ L + ++LS N LT +
Sbjct: 478 ---------------------LEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSS 516
Query: 469 SPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSG 514
+ LK + +L+L+ N + +PS L LS ++L N L
Sbjct: 517 IEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 138 bits (351), Expect = 4e-35
Identities = 73/500 (14%), Positives = 136/500 (27%), Gaps = 98/500 (19%)
Query: 54 SNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNM-----LNL 108
+ ++ ++ SFN L + ++ L L L ++ F + L L
Sbjct: 29 GTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVL 88
Query: 109 SDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNLLNGTINK 167
+ N L + + K L+ L + L +++ LYL N ++
Sbjct: 89 TANPLIFMAETALSGPKA-LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLP 147
Query: 168 SIGQIFKLEITCLSQNSLT------------------DLANIQIKGKLPDLSSRFGTSNP 209
KL++ N++ +L I G + +
Sbjct: 148 KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQ- 205
Query: 210 GIDISSNHFEGPIPPLPSNSSFLNLSKNRFSR-------SISLCSISGSKLTYIDLSSNL 262
++ I NS+ +L F + + I+L +
Sbjct: 206 SLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY 265
Query: 263 LSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELL 322
+ + F L LDL S +P + L ++
Sbjct: 266 FFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKK------------------- 305
Query: 323 TTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKI-PKCFNNFTAMT 381
+ L +NKF F L L + N ++ C N +
Sbjct: 306 ------------LVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353
Query: 382 Q---ERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSN 438
+ T L ++SL LS N
Sbjct: 354 ELDLSHDDIETSDCCNLQLRN---------------------------LSHLQSLNLSYN 386
Query: 439 KLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKI-GQLKSLDFLDLSRNQLVGGIPSSLS 497
+ E + L L+L+ L +++ L L L+LS + L
Sbjct: 387 EPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD 446
Query: 498 PLSVLSVMDLSYNNLSGKIP 517
L L ++L N+
Sbjct: 447 GLPALQHLNLQGNHFPKGNI 466
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 3e-34
Identities = 98/522 (18%), Positives = 163/522 (31%), Gaps = 73/522 (13%)
Query: 10 RLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNISSNFVSIDLSFNQ 69
RL +L +L+L + + H L TL L+ N
Sbjct: 55 RLINLTFLDLTRCQIYWIHE--DTFQSQHRLDTL--------------------VLTANP 92
Query: 70 LQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNM-----LNLSDNKLAIIQNMSSGCL 124
L + L+HL + + N L L N ++ I+
Sbjct: 93 LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPT 152
Query: 125 KNSLESLHLEVNHFTGPIP-DLGGFSSMKRLYLSDNLLN-GTINKSIGQIFKLEITCLSQ 182
+ L+ L + N D+ L L+ N + I +
Sbjct: 153 EK-LKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGG 211
Query: 183 NSLTDLANIQIKG-KLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSR 241
+ +K + L DIS FEG + +NL K+ F
Sbjct: 212 TQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL---CEMSVESINLQKHYFFN 268
Query: 242 SISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNI 301
S S L +DL++ LS +LP +L L L N F S ++
Sbjct: 269 ISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSL 327
Query: 302 QTQFTQQQFNRRTVFIVWELLTTQTFESWEE-RFVRLKSNKFH--GKTPFQLCQFAFLQV 358
+ N + + + T E+ E R + L + QL + LQ
Sbjct: 328 TH--LSIKGNTKRLELG-----TGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQS 380
Query: 359 LDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKG 418
L+LS N + F + + + + K +
Sbjct: 381 LNLSYNEPLSLKTEAFKECPQLE-------LL-----------DLAFTRLKVKDAQSPFQ 422
Query: 419 SGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTG---QNSPKIGQL 475
+ L L+K L LS + L+ + + L L LNL NH Q + + L
Sbjct: 423 N-------LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL 475
Query: 476 KSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIP 517
L+ L LS L + + L +++ +DLS+N L+
Sbjct: 476 GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI 517
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 4e-24
Identities = 54/314 (17%), Positives = 106/314 (33%), Gaps = 31/314 (9%)
Query: 9 LRLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNIS----SNFVSID 64
+ SL E+ + + S S++++ Y +S+ + S +D
Sbjct: 225 STIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELD 284
Query: 65 LSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNM-----LNLSDNKLAIIQNM 119
L+ L +P + L+ L L N+ E N L++ N +
Sbjct: 285 LTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNT--KRLEL 341
Query: 120 SSGCLKN--SLESLHLEVNHFTGPIPDLGGFSSM---KRLYLSDNLLNGTINKSIGQIFK 174
+GCL+N +L L L + ++ + L LS N ++ + +
Sbjct: 342 GTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ 401
Query: 175 LEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSS---F 231
LE+ L+ L L L +++S + + L
Sbjct: 402 LELLDLAFTRLKVKDAQSPFQNLHLLKV--------LNLSHSLLDISSEQLFDGLPALQH 453
Query: 232 LNLSKNRFSRSISLCS---ISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFS 288
LNL N F + + + +L + LS LS + + +DL +N +
Sbjct: 454 LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT 513
Query: 289 GRIPDSMGFLQNIQ 302
+++ L+ I
Sbjct: 514 SSSIEALSHLKGIY 527
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 1e-23
Identities = 60/390 (15%), Positives = 109/390 (27%), Gaps = 55/390 (14%)
Query: 8 SLRLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNIS------SNFV 61
+ + LN + SL T +S +
Sbjct: 198 AFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVE 257
Query: 62 SIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNM-----LNLSDNKLAII 116
SI+L + ++ L+ L L L +P + L LS NK +
Sbjct: 258 SINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENL 316
Query: 117 QNMSSGCLKNSLESLHLEVNHFTGPIPD--LGGFSSMKRLYLSDNLLN--GTINKSIGQI 172
+S+ + L L ++ N + L +++ L LS + + N + +
Sbjct: 317 CQISASNFPS-LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL 375
Query: 173 FKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPP----LPSN 228
L+ LS N L K P L +D++ +
Sbjct: 376 SHLQSLNLSYNEPLSLKTEAFKE-CPQLEL--------LDLAFTRLKVKDAQSPFQNLHL 426
Query: 229 SSFLNLSKNRFSRSISLCSISG-SKLTYIDLSSNLLSGKLPDCWWMF---DSLVILDLGN 284
LNLS + S G L +++L N L IL L
Sbjct: 427 LKVLNLSHSLLD-ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSF 485
Query: 285 NSFSGRIPDSMGFLQNIQT------QFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLK 338
S + L+ + + T + + + ++ L
Sbjct: 486 CDLSSIDQHAFTSLKMMNHVDLSHNRLTS--------------SSIEALSHLKGIYLNLA 531
Query: 339 SNKFHGKTPFQLCQFAFLQVLDLSLNNISG 368
SN P L + + ++L N +
Sbjct: 532 SNHISIILPSLLPILSQQRTINLRQNPLDC 561
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 2e-23
Identities = 66/426 (15%), Positives = 120/426 (28%), Gaps = 69/426 (16%)
Query: 103 GNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIP-DLGGFSSMKRLYLSDNLL 161
N + L I G L NS E L N ++ L L+ +
Sbjct: 14 NKTYNCENLGLNEI----PGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQI 69
Query: 162 NGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGP 221
+ +L+ L+ N L ++ GP
Sbjct: 70 YWIHEDTFQSQHRLDTLVLTANPLIF-------------------------MAETALSGP 104
Query: 222 IPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILD 281
L + S + + L + L SN +S + + L +LD
Sbjct: 105 -----KALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLD 159
Query: 282 LGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNK 341
NN+ + M LQ N + F+S + + +
Sbjct: 160 FQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG------IEPGAFDSAVFQSLNFGGTQ 213
Query: 342 FHGKTP--FQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVG 399
+ L + + P F M+ E +I + + F
Sbjct: 214 NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVE-----SINLQKHYFFN 268
Query: 400 PPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNL 459
+ +F ++ L+L++ L+ +P ++ L L L L
Sbjct: 269 ---ISSNTFHC----------------FSGLQELDLTATHLS-ELPSGLVGLSTLKKLVL 308
Query: 460 SRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPS-SLSPLSVLSVMDLSYNNLSGKIPT 518
S N SL L + N + + L L L +DLS++++
Sbjct: 309 SANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCC 368
Query: 519 GTQLQS 524
QL++
Sbjct: 369 NLQLRN 374
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 5e-11
Identities = 34/277 (12%), Positives = 64/277 (23%), Gaps = 84/277 (30%)
Query: 251 SKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQF 310
+ ++ S N+L + +L LDL D+ + T
Sbjct: 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDT------- 85
Query: 311 NRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKI 370
+ L +N L L+ L IS
Sbjct: 86 ------------------------LVLTANPLIFMAETALSGPKALKHLFFIQTGISSID 121
Query: 371 PKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLI 430
+N +
Sbjct: 122 FIPLHNQKT--------------------------------------------------L 131
Query: 431 KSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLD--FLDLSRNQL 488
+SL L SN ++ + L L+ N + + + L+ L+L+ N +
Sbjct: 132 ESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191
Query: 489 VGGIPSSLSPLSVLSVMDLSYNNLSGKIPTGTQLQSF 525
GI +V ++ I G + +
Sbjct: 192 -AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTI 227
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 1e-09
Identities = 34/272 (12%), Positives = 68/272 (25%), Gaps = 86/272 (31%)
Query: 256 IDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTV 315
+ + L+ ++P + +S L+ N + L N+
Sbjct: 17 YNCENLGLN-EIPGT--LPNSTECLEFSFNVLPTIQNTTFSRLINLT------------- 60
Query: 316 FIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFN 375
F+ L + + L L L+ N + +
Sbjct: 61 ------------------FLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALS 102
Query: 376 NFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLEL 435
A +K L
Sbjct: 103 GPKA--------------------------------------------------LKHLFF 112
Query: 436 SSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSS 495
++ + + L +L L NH++ PK + L LD N +
Sbjct: 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED 172
Query: 496 LSPLSVLSVM--DLSYNNLSGKIPTGTQLQSF 525
+S L + + +L+ N+++G P F
Sbjct: 173 MSSLQQATNLSLNLNGNDIAGIEPGAFDSAVF 204
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 2e-35
Identities = 71/533 (13%), Positives = 161/533 (30%), Gaps = 115/533 (21%)
Query: 11 LHSLRYLNLEENNLANCSDWFQVI----GKLHSLKTLTSHSCYLRPLSNISSNFVSIDLS 66
+ ++L++ + N ++ I +L L+ + + + + ++ +
Sbjct: 417 IKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNI-AVDWEDANSD 475
Query: 67 FNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNM-----LNLSDNKLAIIQNMSS 121
+ + + S ++ L + L +P F ++ LN++ N+ + +
Sbjct: 476 YAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKA 535
Query: 122 GCLK--------NSLESLHLEVNHFTG--PIPDLGGFSSMKRLYLSDNLLNGTINKSIGQ 171
+ ++ ++ N+ L + L N + ++ G
Sbjct: 536 DWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGT 593
Query: 172 IFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSS- 230
KL L N + ++ + + S N + IP + + S
Sbjct: 594 NVKLTDLKLDYNQIEEIPE-DFCAFTDQVEG--------LGFSHNKLKY-IPNIFNAKSV 643
Query: 231 ----FLNLSKNRFSR-----SISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILD 281
++ S N+ S S+ G + + LS N + + + + +
Sbjct: 644 YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTII 703
Query: 282 LGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNK 341
L NN + IP++ ++ + LLTT + L+ NK
Sbjct: 704 LSNNLMT-SIPENSLKPKD-------------GNYKNTYLLTT----------IDLRFNK 739
Query: 342 FHGKTP-FQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGP 400
+ F+ +L +D+S N S P N + +
Sbjct: 740 LTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLK------------------- 779
Query: 401 PYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLS 460
G+ + N++ P I L+ L +
Sbjct: 780 -------------------------AFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIG 814
Query: 461 RNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLS 513
N + K+ L LD++ N + +S+ P + L Y+
Sbjct: 815 SNDIRK-VDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 139 bits (352), Expect = 7e-35
Identities = 67/551 (12%), Positives = 155/551 (28%), Gaps = 96/551 (17%)
Query: 10 RLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNISSNFVSI---DLS 66
+L L+ L+ ++ F + H + + DL
Sbjct: 345 QLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLL 404
Query: 67 FNQLQ-----GSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNM-----LNLSDNKLAII 116
+ + I S+ + + + N + I K + + +++
Sbjct: 405 QDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPF--- 460
Query: 117 QNMSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNLLNGTINKSIGQIFKL 175
+ + E + + + + L + + + + +L
Sbjct: 461 ---TYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPEL 517
Query: 176 EITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNP--GIDISSNHFEGPIPPLPSNSSF-- 231
+ ++ N Q+K L+ T + N+ E P+++S
Sbjct: 518 QSLNIACNRGISA--AQLKADWTRLADDEDTGPKIQIFYMGYNNLEE----FPASASLQK 571
Query: 232 ------LNLSKNRFSRSISLCSISG-SKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGN 284
L+ N+ L + KLT + L N + D D + L +
Sbjct: 572 MVKLGLLDCVHNKVR---HLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSH 628
Query: 285 NSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHG 344
N IP+ +N+ + ++ V L N+
Sbjct: 629 NKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK 687
Query: 345 KTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVH 404
+ + + LS N ++ IP+ N+ +
Sbjct: 688 FPTELFATGSPISTIILSNNLMT-SIPE--NSLKPKDGNYKN------------------ 726
Query: 405 HYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIM--DLVGLVALNLSRN 462
L+ +++L NKL + ++ L L +++S N
Sbjct: 727 ----------------------TYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYN 763
Query: 463 HLTG-----QNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIP 517
+ NS ++ D N+++ P+ ++ L + + N++ K+
Sbjct: 764 CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVD 822
Query: 518 TG--TQLQSFN 526
QL +
Sbjct: 823 EKLTPQLYILD 833
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 5e-28
Identities = 64/506 (12%), Positives = 140/506 (27%), Gaps = 133/506 (26%)
Query: 57 SSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFG-----NMLNLSDN 111
+ + L+ +G +PD+ + L+ LS + F +M +
Sbjct: 322 NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKH 381
Query: 112 KLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINK---- 167
++ + L L + P++ R+ L D + N+
Sbjct: 382 RIRMHYKKMFLDYDQRLNLSDLLQDAINR-NPEMKPIKKDSRISLKDTQIGNLTNRITFI 440
Query: 168 --SIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPG----------IDISS 215
+I ++ KL+I + + T ++ + +++ +
Sbjct: 441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYN 500
Query: 216 NHFEGPIPPLPSNSS---FLNLSKNRFSRSISLCSI---------SGSKLTYIDLSSNLL 263
+P + LN++ NR + L + +G K+ + N L
Sbjct: 501 CPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560
Query: 264 SGKLPDCWWMFD--SLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWEL 321
P + L +LD +N ++ G +
Sbjct: 561 EE-FPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTD------------------ 599
Query: 322 LTTQTFESWEERFVRLKSNKFHGKTPFQLCQFA-FLQVLDLSLNNISGKIPKCFNNFTAM 380
++L N+ P C F ++ L S N + IP FN
Sbjct: 600 -------------LKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNA---- 640
Query: 381 TQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKL 440
++ ++ S++ S NK+
Sbjct: 641 --------------------------------------------KSVYVMGSVDFSYNKI 656
Query: 441 NGAVPE-----EIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQL------- 488
+ + + LS N + + + + LS N +
Sbjct: 657 GSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENS 716
Query: 489 VGGIPSSLSPLSVLSVMDLSYNNLSG 514
+ + +L+ +DL +N L+
Sbjct: 717 LKPKDGNYKNTYLLTTIDLRFNKLTS 742
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 4e-25
Identities = 63/324 (19%), Positives = 112/324 (34%), Gaps = 49/324 (15%)
Query: 10 RLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNIS--SNFVSIDLSF 67
++ + NNL + K+ L L +R L + L +
Sbjct: 546 TGPKIQIFYMGYNNLEEFPAS-ASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDY 604
Query: 68 NQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFG-------NMLNLSDNKLAIIQNMS 120
NQ++ D +E L N+L+ IP F ++ S NK+
Sbjct: 605 NQIEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNI 663
Query: 121 SGCLKN----SLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNLL-------NGTINKS 168
S + + + ++ L N + S + + LS+NL+ + +
Sbjct: 664 SCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGN 723
Query: 169 IGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSN 228
+ L L N LT L++ LP LS+ +D+S N F P P N
Sbjct: 724 YKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSN--------MDVSYNCFSS-FPTQPLN 774
Query: 229 SSFL---------NLSKNRFSRSI--SLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSL 277
SS L + NR R + + L + + SN + K+ + + L
Sbjct: 775 SSQLKAFGIRHQRDAEGNRILRQWPTGITTCP--SLIQLQIGSNDIR-KVDE--KLTPQL 829
Query: 278 VILDLGNNSF-SGRIPDSMGFLQN 300
ILD+ +N S + +++
Sbjct: 830 YILDIADNPNISIDVTSVCPYIEA 853
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 9e-25
Identities = 63/481 (13%), Positives = 126/481 (26%), Gaps = 98/481 (20%)
Query: 55 NISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNK-L 113
N + ++ + + I D E L G + LN + NK L
Sbjct: 249 NKLTKDANVPIQLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKEL 308
Query: 114 AIIQNMSSGCLKN--SLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNLLNGTINKSIG 170
+ + L N + L L G +PD +G + +K L + +
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368
Query: 171 QIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSS 230
+ +++ ++ + L+ + I+ N PI S
Sbjct: 369 EELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQD---AINRNPEMKPIKKD----S 421
Query: 231 FLNLSKNRFSRSI-SLCSISGS-----KLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGN 284
++L + + IS + KL I +++ + +
Sbjct: 422 RISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIA-----VDWEDANSDY 476
Query: 285 NSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHG 344
S L+++ V L +
Sbjct: 477 AKQYENEELSWSNLKDLTD-------------------------------VELYNCPNMT 505
Query: 345 KTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVH 404
+ P L LQ L+++ N + ++T + + +
Sbjct: 506 QLPDFLYDLPELQSLNIACNRGIS-AAQLKADWTRLADDEDT------------------ 546
Query: 405 HYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPE-EIMDLVGLVALNLSRNH 463
I+ + N L + +V L L+ N
Sbjct: 547 ----------------------GPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK 584
Query: 464 LTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTGTQLQ 523
+ + G L L L NQ+ + + + S+N L IP +
Sbjct: 585 VR--HLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAK 641
Query: 524 S 524
S
Sbjct: 642 S 642
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 71.8 bits (176), Expect = 3e-13
Identities = 24/215 (11%), Positives = 58/215 (26%), Gaps = 24/215 (11%)
Query: 337 LKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYY- 395
L G+ P + Q L+VL ++ + + I+++Y
Sbjct: 330 LAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKK 389
Query: 396 -TFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLEL--SSNKLNGAVPEEIMDLV 452
++ + + + +K ++ +N++ + + I L
Sbjct: 390 MFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLT 448
Query: 453 GLVALNLSRNHLTG-------------------QNSPKIGQLKSLDFLDLSRNQLVGGIP 493
L + + + T LK L ++L + +P
Sbjct: 449 KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP 508
Query: 494 SSLSPLSVLSVMDLSYNNLSGKIPTGTQLQSFNGS 528
L L L ++++ N
Sbjct: 509 DFLYDLPELQSLNIACNRGISAAQLKADWTRLADD 543
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 58.7 bits (142), Expect = 4e-09
Identities = 26/197 (13%), Positives = 55/197 (27%), Gaps = 43/197 (21%)
Query: 10 RLHSLRYLNLEENNL-----ANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNISSNFVSID 64
+ + L N + + + L T+ D
Sbjct: 695 TGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTI--------------------D 734
Query: 65 LSFNQLQGSIPDSSQH--MVYLEHLSLMFNELEGGIPKFFGNM-----LNLSDNKLAIIQ 117
L FN+L S+ D + + YL ++ + +N P N + + A
Sbjct: 735 LRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGN 792
Query: 118 NMSS------GCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQ 171
+ + L L + N + + + L ++DN S+
Sbjct: 793 RILRQWPTGITTCPS-LIQLQIGSNDIRK-VDE-KLTPQLYILDIADNPNISIDVTSVCP 849
Query: 172 IFKLEITCLSQNSLTDL 188
+ + L + D+
Sbjct: 850 YIEAGMYVLLYDKTQDI 866
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 56.0 bits (135), Expect = 2e-08
Identities = 17/101 (16%), Positives = 38/101 (37%), Gaps = 2/101 (1%)
Query: 427 LGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRN 486
G + L L+ G VP+ I L L L+ + T + + D + ++
Sbjct: 322 NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKH 381
Query: 487 QLVGGIPS-SLSPLSVLSVMDLSYNNLSGKIPTGTQLQSFN 526
++ L L++ DL + ++ + P ++ +
Sbjct: 382 RIRMHYKKMFLDYDQRLNLSDLLQDAIN-RNPEMKPIKKDS 421
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 1e-07
Identities = 28/223 (12%), Positives = 57/223 (25%), Gaps = 46/223 (20%)
Query: 340 NKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMT-------QERSSDPTIKV 392
+ + + L + L L+ G++P T + E S
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368
Query: 393 YYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLV 452
T H + + + +L + +N E+ +
Sbjct: 369 EELTPDMSEERKHRIRMH--------YKKMFLDYDQRLNLSDLLQDAINRN--PEMKPIK 418
Query: 453 GLVALNLSRNHLTGQN------SPKIGQLKSLDFLDLSRNQLVG---------------- 490
++L + S I +L L + + +
Sbjct: 419 KDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAK 478
Query: 491 ---GIPSSLSPLSVLSVMDLSYNNLSGKIPTG----TQLQSFN 526
S S L L+ ++L ++P +LQS N
Sbjct: 479 QYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLN 521
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 3e-34
Identities = 87/548 (15%), Positives = 161/548 (29%), Gaps = 101/548 (18%)
Query: 10 RLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNIS----SNFVSIDL 65
L++L+L + D + LH L L ++ S S ++ ++
Sbjct: 54 NFSELQWLDLSRCEIETIED--KAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111
Query: 66 SFNQLQGSIPDSSQHMVYLEHLSLMFNELEG-GIPKFFGNM-----LNLSDNKLAIIQNM 119
+L ++ L+ L++ N + +P +F N+ ++LS N + I
Sbjct: 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN 171
Query: 120 SSGCLKN---SLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQ-IFKL 175
L+ SL + +N + L L N + I K+ Q + L
Sbjct: 172 DLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGL 231
Query: 176 EITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSF---L 232
+ L D N++I + + + ++ + + +
Sbjct: 232 HVHRLILGEFKDERNLEI-FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAM 290
Query: 233 NLSKNRFSR-------------SISLCSISG------SKLTYIDLSSNLLSGKLPDCWWM 273
+L+ SI C + L + L+ N S
Sbjct: 291 SLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVA-- 348
Query: 274 FDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEE- 332
SL LDL N+ S S L + FN + + F EE
Sbjct: 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM-------SANFMGLEEL 401
Query: 333 RFVRLKSNKFHGKTPFQ-LCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIK 391
+ + + + T F L LD+S N F T+
Sbjct: 402 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS------------ 449
Query: 392 VYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIM-D 450
+ +L+++ N + +
Sbjct: 450 --------------------------------------LNTLKMAGNSFKDNTLSNVFAN 471
Query: 451 LVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYN 510
L L+LS+ L + L L L++S N L+ S + L LS +D S+N
Sbjct: 472 TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN 531
Query: 511 NLSGKIPT 518
+
Sbjct: 532 RIETSKGI 539
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 1e-32
Identities = 92/523 (17%), Positives = 167/523 (31%), Gaps = 63/523 (12%)
Query: 11 LHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNIS----SNFVSIDLS 66
LH L L L N + + S L SL+ L + L L + ++++
Sbjct: 79 LHHLSNLILTGNPIQSFSP--GSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVA 136
Query: 67 FNQLQG-SIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNM---------LNLSDNKLAII 116
N + +P ++ L H+ L +N ++ + L++S N + I
Sbjct: 137 HNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFI 196
Query: 117 QNMSSGCLKNSLESLHLEVNHFTGPIPD--LGGFSSMKRLYLSDNLLNGTINKSIGQIFK 174
Q+ + + L L L N + I L + + L N I +
Sbjct: 197 QDQAFQGI--KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSI 254
Query: 175 LEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSS--FL 232
+E C L + + ++ + + +P + L
Sbjct: 255 MEGLCDVTIDEFRLTYTNDFSDDIVKFHCL-ANVSAMSLAGVSIKY-LEDVPKHFKWQSL 312
Query: 233 NLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIP 292
++ + + ++ L + L+ N S SL LDL N+ S
Sbjct: 313 SIIRCQLK---QFPTLDLPFLKSLTLTMNKGSISFKKVA--LPSLSYLDLSRNALSFSGC 367
Query: 293 DSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEE-RFVRLKSNKFHGKTPFQ-L 350
S L + FN + + F EE + + + + T F
Sbjct: 368 CSYSDLGTNSLRHLDLSFNGAIIM-------SANFMGLEELQHLDFQHSTLKRVTEFSAF 420
Query: 351 CQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQD 410
L LD+S N F T++ T+ + SF+D
Sbjct: 421 LSLEKLLYLDISYTNTKIDFDGIFLGLTSLN-------TL-----------KMAGNSFKD 462
Query: 411 KVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSP 470
+ + + L+LS +L L L LN+S N+L +S
Sbjct: 463 NTLS-------NVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS 515
Query: 471 KIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLS 513
QL SL LD S N++ L+ +L+ N+++
Sbjct: 516 HYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 3e-31
Identities = 78/487 (16%), Positives = 147/487 (30%), Gaps = 66/487 (13%)
Query: 54 SNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKL 113
+I S+ +IDLSFN L+ S + L+ L +LS ++
Sbjct: 28 DDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWL-------------------DLSRCEI 68
Query: 114 AIIQNMSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNLLNGTINKSIGQI 172
I++ + L + L +L L N P G +S++ L + L + IGQ+
Sbjct: 69 ETIEDKAWHGLHH-LSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQL 127
Query: 173 FKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPP-------L 225
L+ ++ N + L +L +D+S N+ +
Sbjct: 128 ITLKKLNVAHNFIHSCKLPAYFSNLTNLVH--------VDLSYNYIQTITVNDLQFLREN 179
Query: 226 PSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLP-DCWWMFDSLVILDLGN 284
P + L++S N I + G KL + L N S + C L + L
Sbjct: 180 PQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLIL 238
Query: 285 NSFSG----RIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEE-RFVRLKS 339
F I + + + F F + L
Sbjct: 239 GEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFS----DDIVKFHCLANVSAMSLAG 294
Query: 340 NKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVG 399
K + + Q L + + P + + + + + V
Sbjct: 295 VSI--KYLEDVPKHFKWQSLSIIRCQLKQ-FP--TLDLPFLKSLTLTMNKGSISF-KKVA 348
Query: 400 PP-----YVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGL 454
P + + ++ G ++ L+LS N + M L L
Sbjct: 349 LPSLSYLDLSRNALSFSGCCSYSDLG------TNSLRHLDLSFNGAII-MSANFMGLEEL 401
Query: 455 VALNLSRNHLTGQNSPK-IGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLS 513
L+ + L L+ L +LD+S L+ L+ + ++ N+
Sbjct: 402 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK 461
Query: 514 GKIPTGT 520
+
Sbjct: 462 DNTLSNV 468
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 97.0 bits (242), Expect = 2e-21
Identities = 57/308 (18%), Positives = 106/308 (34%), Gaps = 32/308 (10%)
Query: 11 LHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNIS-SNFVSIDLSFNQ 69
L ++ ++L ++ D K ++L+ C L+ + S+ L+ N+
Sbjct: 284 LANVSAMSLAGVSIKYLEDVP----KHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNK 339
Query: 70 LQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNM-------LNLSDNKLAIIQNMSSG 122
SI + L +L L N L + ++ L+LS N I+ G
Sbjct: 340 G--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMG 397
Query: 123 CLKNSLESLHLEVNHFTGPIPDLGGFSSMKRL---YLSDNLLNGTINKSIGQIFKLEITC 179
L+ L + + + + F S+++L +S + + L
Sbjct: 398 L--EELQHLDFQHSTLKR-VTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK 454
Query: 180 LSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSS---FLNLSK 236
++ NS D + +L+ +D+S E + LN+S
Sbjct: 455 MAGNSFKDNTLSNVFANTTNLTF--------LDLSKCQLEQISWGVFDTLHRLQLLNMSH 506
Query: 237 NRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMG 296
N S L+ +D S N + SL +L NNS + I +
Sbjct: 507 NNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVAC-ICEHQK 565
Query: 297 FLQNIQTQ 304
FLQ ++ Q
Sbjct: 566 FLQWVKEQ 573
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 2e-14
Identities = 38/244 (15%), Positives = 70/244 (28%), Gaps = 44/244 (18%)
Query: 7 RSLRLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNISSNFVSIDLS 66
L +SLR+L+L N S F L L+ L D
Sbjct: 371 SDLGTNSLRHLDLSFNGAIIMSANFM---GLEELQHL--------------------DFQ 407
Query: 67 FNQLQGSIPDSS-QHMVYLEHLSLMFNELEGGIPKFFGNM-----LNLSDNKLAIIQNMS 120
+ L+ S+ + L +L + + + F + L ++ N N
Sbjct: 408 HSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF--KDNTL 465
Query: 121 SGCLKN--SLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEI 177
S N +L L L ++ L +S N L + Q++ L
Sbjct: 466 SNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLST 525
Query: 178 TCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKN 237
S N + ++ L+ ++++N I ++ K
Sbjct: 526 LDCSFNRIETSKG-ILQHFPKSLAF--------FNLTNNSVAC-ICEHQKFLQWVKEQKQ 575
Query: 238 RFSR 241
Sbjct: 576 FLVN 579
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 2e-12
Identities = 53/420 (12%), Positives = 101/420 (24%), Gaps = 149/420 (35%)
Query: 106 LNLSDNKL-AIIQNMSSGCLKNSLESLHLEVNHFTGPIP-DLGGFSSMKRLYLSDNLLNG 163
D KL + ++ S S +++ L N FS ++ L LS +
Sbjct: 16 YQCMDQKLSKVPDDIPS-----STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET 70
Query: 164 TINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIP 223
+K+ + L L+ N + + G L L + +
Sbjct: 71 IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSG-LTSLEN--------LVAVETKLASLES 121
Query: 224 PLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSG-KLPDCWWMFDSLVILDL 282
L L ++++ N + KLP + +LV +DL
Sbjct: 122 -----FPIGQLIT----------------LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDL 160
Query: 283 GNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKF 342
N + + FL+
Sbjct: 161 SYNYIQTITVNDLQFLRENPQV-------------------------------------- 182
Query: 343 HGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPY 402
LD+SLN I + F
Sbjct: 183 -------------NLSLDMSLNPIDFIQDQAFQGIK------------------------ 205
Query: 403 VHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEE-IMDLVGLVALNLSR 461
+ L L N + + + + +L GL L
Sbjct: 206 ---------------------------LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLIL 238
Query: 462 NHLTGQNSPKIGQLKSLDFL--------DLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLS 513
+ + +I + ++ L L+ L+ +S M L+ ++
Sbjct: 239 GEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK 298
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 2e-09
Identities = 40/303 (13%), Positives = 69/303 (22%), Gaps = 94/303 (31%)
Query: 251 SKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQF 310
S IDLS N L + F L LDL + L ++
Sbjct: 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSN------- 84
Query: 311 NRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKI 370
+ L N +P L+ L ++
Sbjct: 85 ------------------------LILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLE 120
Query: 371 PKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLI 430
+
Sbjct: 121 SFPIGQLIT--------------------------------------------------L 130
Query: 431 KSLELSSNKLNGA-VPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDF----LDLSR 485
K L ++ N ++ +P +L LV ++LS N++ + L+ LD+S
Sbjct: 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190
Query: 486 NQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIP-------TGTQLQSFNGSVYAGNPELCG 538
N + + + L + L N S I G + + L
Sbjct: 191 NPIDFIQDQAFQGIK-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI 249
Query: 539 LPL 541
Sbjct: 250 FEP 252
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 5e-08
Identities = 41/265 (15%), Positives = 64/265 (24%), Gaps = 89/265 (33%)
Query: 254 TYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRR 313
LS K+PD + S +DL N S +Q
Sbjct: 14 ITYQCMDQKLS-KVPD--DIPSSTKNIDLSFNPLKILKSYSFSNFSELQ----------- 59
Query: 314 TVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKC 373
++ L + L L L+ N I P
Sbjct: 60 --------------------WLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGS 99
Query: 374 FNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSL 433
F+ L +++L
Sbjct: 100 FSG--------------------------------------------------LTSLENL 109
Query: 434 ELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPK-IGQLKSLDFLDLSRNQLVGGI 492
KL I L+ L LN++ N + P L +L +DLS N +
Sbjct: 110 VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT 169
Query: 493 PSSLSPLSVLSVM----DLSYNNLS 513
+ L L + D+S N +
Sbjct: 170 VNDLQFLRENPQVNLSLDMSLNPID 194
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 2e-26
Identities = 94/540 (17%), Positives = 175/540 (32%), Gaps = 82/540 (15%)
Query: 11 LHSLRYLNLEENNLAN-CSDWFQVIGKLHSLK------TLTSHSCYLRPLSNISSNFVSI 63
L++ L L N + + F + +L L+ LT R L N+ +
Sbjct: 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLR----IL 78
Query: 64 DLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGI--PKFFGNM-----LNLSDNKLAII 116
DL +++ PD+ Q + +L L L F L + +F N+ L+LS N++ +
Sbjct: 79 DLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL 138
Query: 117 QNMSSGCLKNSLESLHLEVNHFTG-PIPDLGGFS--SMKRLYLSDNLLNGTINKSIGQIF 173
S NSL+S+ N +L ++ L+ N L ++ G+
Sbjct: 139 YLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCM 198
Query: 174 K------LEITCLSQNSLTDLAN---IQIKGKLPDLSSRFGTSNPGIDISSNHFE----G 220
LEI +S N T K S G ++ +
Sbjct: 199 NPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN 258
Query: 221 PIPPLPSNS-SFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVI 279
L +S L+LS S + L ++L+ N ++ + ++ D+L +
Sbjct: 259 TFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQV 318
Query: 280 LDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKS 339
L+L N + L + + L+
Sbjct: 319 LNLSYNLLGELYSSNFYGLPKVAY-------------------------------IDLQK 347
Query: 340 NKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVG 399
N LQ LDL N ++ + ++ S + +
Sbjct: 348 NHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLVTLPKINLT 402
Query: 400 PPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEI-MDLVGLVALN 458
+H + + + + + ++ L L+ N+ + ++ + L L
Sbjct: 403 ANLIHLSENRLENLDILY-----FLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLF 457
Query: 459 LSRNHLTGQNSPKI-----GQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLS 513
L N L ++ L L L L+ N L P S L+ L + L+ N L+
Sbjct: 458 LGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 111 bits (278), Expect = 1e-25
Identities = 102/566 (18%), Positives = 176/566 (31%), Gaps = 105/566 (18%)
Query: 10 RLHSLRYLNLEENNLANCS-DWFQVIGKLHSLKTLTSHSCYLRPLSNISSNFV------S 62
L +LR L+L + + D FQ L L L + C L F
Sbjct: 71 NLPNLRILDLGSSKIYFLHPDAFQ---GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127
Query: 63 IDLSFNQLQG-SIPDSSQHMVYLEHLSLMFNELEGGIPKFFGN-------MLNLSDNKLA 114
+DLS NQ++ + S + L+ + N++ +L+ N L
Sbjct: 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLY 187
Query: 115 IIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFK 174
++ G N ++ LE+ +G ++ N ++ + S+
Sbjct: 188 SRVSVDWGKCMNPFRNMVLEILDVSGN------GWTVDITGNFSNAISKSQAFSLILAHH 241
Query: 175 LEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLP----SNSS 230
+ +++ D G L S R +D+S + +
Sbjct: 242 IMGAGFGFHNIKDPDQNTFAG-LARSSVRH------LDLSHGFVFS-LNSRVFETLKDLK 293
Query: 231 FLNLSKNRFSRSISLCSISG-SKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSG 289
LNL+ N+ + I+ + G L ++LS NLL ++ + +DL N +
Sbjct: 294 VLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAI 352
Query: 290 RIPDSMGFLQNIQT------QFTQQQF--NRRTVFIVWELLTTQTFESWEERFVRLKSNK 341
+ FL+ +QT T F + +F+ L T + + L N+
Sbjct: 353 IQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENR 412
Query: 342 FHGKTPFQ-LCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGP 400
L + LQ+L L+ N S
Sbjct: 413 LENLDILYFLLRVPHLQILILNQNRFSSCSGDQT----------------------PSEN 450
Query: 401 PYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEI-----MDLVGLV 455
P ++ L L N L A E+ L L
Sbjct: 451 PS---------------------------LEQLFLGENMLQLAWETELCWDVFEGLSHLQ 483
Query: 456 ALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGK 515
L L+ N+L L +L L L+ N+L + L L ++D+S N L
Sbjct: 484 VLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPAN--LEILDISRNQLL-- 539
Query: 516 IPTGTQLQSFNGSVYAGNPELCGLPL 541
P S + N +C L
Sbjct: 540 APNPDVFVSLSVLDITHNKFICECEL 565
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 94.1 bits (234), Expect = 3e-20
Identities = 73/483 (15%), Positives = 140/483 (28%), Gaps = 116/483 (24%)
Query: 48 CYLRPLSNISSNFVSI---DLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGI-PKFFG 103
L+ + + LSFN ++ S + L+ L L I + F
Sbjct: 11 YRFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFR 70
Query: 104 NM-----LNLSDNKLAIIQNMSSGCLKN--SLESLHLEVNHFTGPIPDLGGFSSM---KR 153
N+ L+L +K I + + L L L + + G F ++ R
Sbjct: 71 NLPNLRILDLGSSK---IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127
Query: 154 LYLSDNLLNG-TINKSIGQIFKLEITCLSQNSLTDLANIQIKG-KLPDLSSRFGTSNPGI 211
L LS N + ++ S G++ L+ S N + + +++ + LS +N
Sbjct: 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLY 187
Query: 212 DISSNHFEGPIPPLPSNS-SFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDC 270
S + + P + L++S N ++ I+ SN +S
Sbjct: 188 SRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDIT------------GNFSNAISKSQAFS 235
Query: 271 WWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESW 330
+ ++ G ++ ++ L +
Sbjct: 236 LILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVR-------------------------- 269
Query: 331 EERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTI 390
+ L L+VL+L+ N I+ + F
Sbjct: 270 ---HLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDN----------- 315
Query: 391 KVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMD 450
++ L LS N L
Sbjct: 316 ---------------------------------------LQVLNLSYNLLGELYSSNFYG 336
Query: 451 LVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYN 510
L + ++L +NH+ L+ L LDL N L +++ + + + LS N
Sbjct: 337 LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL-----TTIHFIPSIPDIFLSGN 391
Query: 511 NLS 513
L
Sbjct: 392 KLV 394
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 92.2 bits (229), Expect = 1e-19
Identities = 66/327 (20%), Positives = 111/327 (33%), Gaps = 43/327 (13%)
Query: 5 LMRSLRLHSLRYLNLEENNL----------ANCSDWFQVIGKLHSLKTLTSHSCYLRPLS 54
M R L L++ N A + H + ++
Sbjct: 197 CMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPD 256
Query: 55 N------ISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNM--- 105
S+ +DLS + + + L+ L+L +N++ + F +
Sbjct: 257 QNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNL 316
Query: 106 --LNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTG-PIPDLGGFSSMKRLYLSDNLLN 162
LNLS N L + + + L + + L+ NH ++ L L DN L
Sbjct: 317 QVLNLSYNLLGELYSSNFYGLPK-VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375
Query: 163 GTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPI 222
+I I + LS N L L I + L LS N ++ +F +
Sbjct: 376 -----TIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLS-----ENRLENLDILYFLLRV 425
Query: 223 PPLPSNSSFLNLSKNRFSRSISLCSISG-SKLTYIDLSSNLLSGKLPD--CWWMFD---S 276
P L L L++NRFS + S L + L N+L CW +F+
Sbjct: 426 PHL----QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSH 481
Query: 277 LVILDLGNNSFSGRIPDSMGFLQNIQT 303
L +L L +N + P L ++
Sbjct: 482 LQVLYLNHNYLNSLPPGVFSHLTALRG 508
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 87.9 bits (218), Expect = 2e-18
Identities = 72/393 (18%), Positives = 129/393 (32%), Gaps = 54/393 (13%)
Query: 7 RSLRLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNISSNFVSIDLS 66
L+ +L + +L N+L + + + + + +S
Sbjct: 169 EPLQGKTLSFFSLAANSLYS----RVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNF 224
Query: 67 FNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNM-------LNLSDNKLAIIQNM 119
N + S S ++ F+ ++ F + L+LS + + +
Sbjct: 225 SNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR 284
Query: 120 SSGCLKNSLESLHLEVNHFTG-PIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEIT 178
LK+ L+ L+L N G +++ L LS NLL + + + K+
Sbjct: 285 VFETLKD-LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYI 343
Query: 179 CLSQNSLTDLANIQIKG----KLPDLSS------RFGTSNPGIDISSNHFEGPIPPLPSN 228
L +N + + + K + DL F S P I +S N +P +
Sbjct: 344 DLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVT-LPKINLT 402
Query: 229 SSFLNLSKNRFSRSISLCSISG-SKLTYIDLSSNLLSGKLPDC-WWMFDSLVILDLGNNS 286
++ ++LS+NR L + L + L+ N S D SL L LG N
Sbjct: 403 ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENM 462
Query: 287 FSGRI-----PDSMGFLQNIQT------QFTQQQFNRRTVFIVWELLTTQTFESWEE-RF 334
D L ++Q L F R
Sbjct: 463 LQLAWETELCWDVFEGLSHLQVLYLNHNYLNS--------------LPPGVFSHLTALRG 508
Query: 335 VRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNIS 367
+ L SN+ + L A L++LD+S N +
Sbjct: 509 LSLNSNRLTVLSHNDL--PANLEILDISRNQLL 539
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 87.6 bits (217), Expect = 3e-18
Identities = 73/418 (17%), Positives = 129/418 (30%), Gaps = 79/418 (18%)
Query: 103 GNMLNLSDNKL-AIIQNMSSGCLKNSLESLHLEVNHFTG-PIPDLGGFSSMKRLYLSDNL 160
G + L + Q +++ E L L N+ ++ L L
Sbjct: 6 GRIAFYRFCNLTQVPQVLNT------TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQY 59
Query: 161 LNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEG 220
TI+K + +L L DL S + + + F+G
Sbjct: 60 TPLTIDKE---------AFRNLPNLRIL----------DLGS-----SKIYFLHPDAFQG 95
Query: 221 PIPPLPSNSSFLNLSKNRFSRSISLCSI--SGSKLTYIDLSSNLLSG-KLPDCWWMFDSL 277
+ L L S ++ + LT +DLS N + L + +SL
Sbjct: 96 L-----FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSL 150
Query: 278 VILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRL 337
+D +N + LQ F N L ++ W +
Sbjct: 151 KSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS---------LYSRVSVDWGKCMNPF 201
Query: 338 KSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERS--SDPTIKVYYY 395
++ L++LD+S N + I F+N + +Q S I +
Sbjct: 202 RNMV--------------LEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGF 247
Query: 396 TFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLV 455
F +F + ++ L+LS + L L
Sbjct: 248 GFHNIKDPDQNTFAGLARSS--------------VRHLDLSHGFVFSLNSRVFETLKDLK 293
Query: 456 ALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLS 513
LNL+ N + L +L L+LS N L S+ L ++ +DL N+++
Sbjct: 294 VLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA 351
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 4e-07
Identities = 19/96 (19%), Positives = 33/96 (34%), Gaps = 1/96 (1%)
Query: 430 IKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKI-GQLKSLDFLDLSRNQL 488
+ L LS N + L L L L + + L +L LDL +++
Sbjct: 26 TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI 85
Query: 489 VGGIPSSLSPLSVLSVMDLSYNNLSGKIPTGTQLQS 524
P + L L + L + LS + ++
Sbjct: 86 YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN 121
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 5e-25
Identities = 77/481 (16%), Positives = 152/481 (31%), Gaps = 53/481 (11%)
Query: 54 SNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKL 113
N+ + ++DLSFN L+ S L+ L L E++ + ++
Sbjct: 24 DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL-------- 75
Query: 114 AIIQNMSSGCLKNSLESLHLEVNHFTG-PIPDLGGFSSMKRLYLSDNLLNGTINKSIGQI 172
+ L +L L N + G SS+++L + L N IG +
Sbjct: 76 ------------SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123
Query: 173 FKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEG-------PIPPL 225
L+ ++ N + + L +L +D+SSN + + +
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEH--------LDLSSNKIQSIYCTDLRVLHQM 175
Query: 226 PSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPD-CWWMFDSLVILDLGN 284
P + L+LS N + I + +L + L +N S + C L + L
Sbjct: 176 PLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 234
Query: 285 NSFSG----RIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSN 340
F D + + ++ + + L S
Sbjct: 235 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSF--SLVSV 292
Query: 341 KFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGP 400
F Q L+L + +T + ++ V
Sbjct: 293 TIERVKDF--SYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA----FSEVDL 346
Query: 401 PYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLS 460
P + + ++KG + +K L+LS N + + + L L L+
Sbjct: 347 PSLEFLDLSRNGL-SFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQ 404
Query: 461 RNHLTGQNSPKI-GQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTG 519
++L + + L++L +LD+S + LS L V+ ++ N+
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464
Query: 520 T 520
Sbjct: 465 I 465
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 2e-23
Identities = 89/525 (16%), Positives = 161/525 (30%), Gaps = 88/525 (16%)
Query: 10 RLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNIS----SNFVSIDL 65
L+ L+L + D L L TL ++ L+ + S+ +
Sbjct: 50 SFPELQVLDLSRCEIQTIED--GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107
Query: 66 SFNQLQGSIPDSSQHMVYLEHLSLMFNEL-EGGIPKFFGNM-----LNLSDNKLAIIQNM 119
L H+ L+ L++ N + +P++F N+ L+LS NK+ I
Sbjct: 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167
Query: 120 SSGCLKN---SLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTI-NKSIGQIFKL 175
L SL L +N P + +L L +N + + I + L
Sbjct: 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGL 227
Query: 176 EITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPS-NSSFLNL 234
E+ L + N++ + EG L + L
Sbjct: 228 EVHRLVLGEFRNEGNLE-------------------KFDKSALEG----LCNLTIEEFRL 264
Query: 235 SKNRFSRSISLCSISG-SKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPD 293
+ + + + + ++ L S + + L+L N F
Sbjct: 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY--NFGWQHLELVNCKFGQFPTL 322
Query: 294 SMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFH--GKTPFQLC 351
+ L+ + FT + + L + L N G
Sbjct: 323 KLKSLKRL--TFTSNKGGNAFSEVDLPSLEF----------LDLSRNGLSFKGCCSQSDF 370
Query: 352 QFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKV--YYYTFVGPPYVHHYSFQ 409
L+ LDLS N + + F + +K + F+
Sbjct: 371 GTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN------- 422
Query: 410 DKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNS 469
+ L++S A L L L ++ N
Sbjct: 423 --------------------LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462
Query: 470 PKI-GQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLS 513
P I +L++L FLDLS+ QL P++ + LS L V++++ N L
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK 507
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 89.4 bits (222), Expect = 5e-19
Identities = 91/528 (17%), Positives = 164/528 (31%), Gaps = 122/528 (23%)
Query: 11 LHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNIS----SNFVSIDLS 66
L L L L N + + + L SL+ L + L L N ++++
Sbjct: 75 LSHLSTLILTGNPIQSLAL--GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 132
Query: 67 FNQLQ-GSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNM---------LNLSDNKLAII 116
N +Q +P+ ++ LEHL L N+++ + L+LS N + I
Sbjct: 133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 192
Query: 117 QNMSSGCLKN-SLESLHLEVNHFTGPIP-----------------------------DLG 146
Q G K L L L N + + D
Sbjct: 193 Q---PGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS 249
Query: 147 GFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGT 206
+ L + + L ++ + I L CL+ S L ++ I+ ++ D S +
Sbjct: 250 ALEGLCNLTIEEFRLAY-LDYYLDDIIDL-FNCLTNVSSFSLVSVTIE-RVKDFS--YNF 304
Query: 207 SNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLS-- 264
+++ + F + L + N+ + S + L ++DLS N LS
Sbjct: 305 GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLP--SLEFLDLSRNGLSFK 362
Query: 265 GKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQT---QFTQ-QQFNRRTVFIVWE 320
G + SL LDL N + + L+ ++ Q + +Q + +VF+
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421
Query: 321 LLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAM 380
L + + + L+VL ++ N+ + FT +
Sbjct: 422 NLIY----------LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP--DIFTEL 469
Query: 381 TQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKL 440
+ L+LS +L
Sbjct: 470 RN-----------------------------------------------LTFLDLSQCQL 482
Query: 441 NGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQL 488
P L L LN++ N L +L SL + L N
Sbjct: 483 EQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 69.0 bits (169), Expect = 2e-12
Identities = 53/292 (18%), Positives = 101/292 (34%), Gaps = 55/292 (18%)
Query: 11 LHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNIS-SNFVSIDLSFNQ 69
L ++ +L + D+ + L +C + + + + N+
Sbjct: 281 LTNVSSFSLVSVTIERVKDFS----YNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNK 336
Query: 70 LQGSIPDSSQHMVYLEHLSLMFNELE--GGIPKFFGNM-----LNLSDNKLAIIQNMSSG 122
+ S + LE L L N L G + L+LS N + + + G
Sbjct: 337 GGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG 394
Query: 123 CLKNSLESLHLEVNHFTGPIPDLGGFSSM---KRLYLSDNLLNGTINKSIGQIFKLEITC 179
LE L + ++ + + F S+ L +S N + LE+
Sbjct: 395 L--EQLEHLDFQHSNLKQ-MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 451
Query: 180 LSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRF 239
++ NS + I +L +L+ +D+S E + P ++F +LS
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTF--------LDLSQCQLEQ-LSP----TAFNSLSS--- 495
Query: 240 SRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFD---SLVILDLGNNSFS 288
L ++++SN L +PD +FD SL + L N +
Sbjct: 496 -------------LQVLNMASNQLK-SVPD--GIFDRLTSLQKIWLHTNPWD 531
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 66.7 bits (163), Expect = 9e-12
Identities = 33/169 (19%), Positives = 64/169 (37%), Gaps = 16/169 (9%)
Query: 10 RLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNIS-----SNFVSID 64
SL+YL+L N + S F L L+ L L+ +S S N + +D
Sbjct: 371 GTTSLKYLDLSFNGVITMSSNFL---GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427
Query: 65 LSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPK-FFGNM-----LNLSDNKLAIIQN 118
+S + + + LE L + N + F + L+LS +L +
Sbjct: 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487
Query: 119 MSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNLLNGTIN 166
+ L + L+ L++ N +S+++++L N + +
Sbjct: 488 TAFNSLSS-LQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 65.1 bits (159), Expect = 2e-11
Identities = 54/259 (20%), Positives = 92/259 (35%), Gaps = 30/259 (11%)
Query: 6 MRSLRLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNISSNFV---- 61
+L+L SL+ L N N L SL+ L L S +
Sbjct: 319 FPTLKLKSLKRLTFTSNKGGNAFSEV----DLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374
Query: 62 --SIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIP-KFFGNM-----LNLSDNKL 113
+DLSFN + ++ + + LEHL + L+ F ++ L++S
Sbjct: 375 LKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433
Query: 114 AIIQNMSSGCLKNSLESLHLEVNHFTGPIPD--LGGFSSMKRLYLSDNLLNGTINKSIGQ 171
+ N L + LE L + N F ++ L LS L +
Sbjct: 434 RVAFNGIFNGLSS-LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492
Query: 172 IFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSF 231
+ L++ ++ N L + I +L L I + +N ++ P + S +
Sbjct: 493 LSSLQVLNMASNQLKSV-PDGIFDRLTSLQK--------IWLHTNPWDCSCPRIDYLSRW 543
Query: 232 LNLSKNRFSRSISLCSISG 250
LN + + S CS SG
Sbjct: 544 LNKNSQKEQGSA-KCSGSG 561
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 4e-10
Identities = 49/247 (19%), Positives = 78/247 (31%), Gaps = 34/247 (13%)
Query: 9 LRLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNIS--SNFVSIDLS 66
L +N + L SLK LT S + + +DLS
Sbjct: 304 FGWQHLELVNCKFGQFPTLK--------LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLS 355
Query: 67 FNQLQ--GSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNM-----LNLSDNKLAIIQNM 119
N L G S L++L L FN + + F + L+ + L +
Sbjct: 356 RNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEF 414
Query: 120 SSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNLLNGTINKSI-GQIFKLEI 177
S +L L + H G SS++ L ++ N I ++ L
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474
Query: 178 TCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHF----EGPIPPLPSNSSFLN 233
LSQ L L+ L L ++++SN +G L S +
Sbjct: 475 LDLSQCQLEQLSP-TAFNSLSSLQV--------LNMASNQLKSVPDGIFDRLTSLQK-IW 524
Query: 234 LSKNRFS 240
L N +
Sbjct: 525 LHTNPWD 531
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 1e-24
Identities = 88/512 (17%), Positives = 171/512 (33%), Gaps = 131/512 (25%)
Query: 11 LHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNIS--SNFVSIDLSFN 68
L L + N+ + L + TL + ++ + + +N I+ S N
Sbjct: 23 LAEKMKTVLGKTNVTDTVS----QTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNN 78
Query: 69 QLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNM-----LNLSDNKLAIIQNMSSGC 123
QL P + + L + + N++ P N+ L L +N++ I + +
Sbjct: 79 QLTDITPLKN--LTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKN-- 132
Query: 124 LKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQN 183
L N L L L N + I L G +S+++L + + + K + + LE +S N
Sbjct: 133 LTN-LNRLELSSNTISD-ISALSGLTSLQQLSFGNQVTD---LKPLANLTTLERLDISSN 187
Query: 184 SLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSS--FLNLSKNRFSR 241
++D++ + KL +L S + ++N I PL ++ L+L+ N+
Sbjct: 188 KVSDISVL---AKLTNLES--------LIATNNQISD-ITPLGILTNLDELSLNGNQLKD 235
Query: 242 SISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNI 301
+L S++ LT +DL++N +S P L L LG N S + L +
Sbjct: 236 IGTLASLT--NLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISN--ISPLAGLTAL 289
Query: 302 QTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDL 361
+ L N+ +P + L L L
Sbjct: 290 TN-------------------------------LELNENQLEDISP--ISNLKNLTYLTL 316
Query: 362 SLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGR 421
NNIS P ++ T +
Sbjct: 317 YFNNISDISP--VSSLTKLQ---------------------------------------- 334
Query: 422 EYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFL 481
L +NK++ + +L + L+ N ++ + + L + L
Sbjct: 335 ----------RLFFYNNKVSD--VSSLANLTNINWLSAGHNQIS--DLTPLANLTRITQL 380
Query: 482 DLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLS 513
L+ + + +S+ + + L
Sbjct: 381 GLNDQAWTNAPVNYKANVSIPNTVKNVTGALI 412
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 96.2 bits (240), Expect = 2e-21
Identities = 64/289 (22%), Positives = 120/289 (41%), Gaps = 32/289 (11%)
Query: 11 LHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNIS--SNFVSIDLSFN 68
L +L L N +++ +G L +L L+ + L+ + ++ +N +DL+ N
Sbjct: 198 LTNLESLIATNNQISD----ITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANN 253
Query: 69 QLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFG----NMLNLSDNKLAIIQNMSSGCL 124
Q+ P S + L L L N++ I G L L++N+L I +S+ L
Sbjct: 254 QISNLAPLS--GLTKLTELKLGANQISN-ISPLAGLTALTNLELNENQLEDISPISN--L 308
Query: 125 KNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNS 184
KN L L L N+ + I + + ++RL+ +N ++ S+ + + N
Sbjct: 309 KN-LTYLTLYFNNISD-ISPVSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQ 364
Query: 185 LTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSIS 244
++DL + L ++ + ++ + +N S N KN I+
Sbjct: 365 ISDLTPL---ANLTRITQ--------LGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIA 413
Query: 245 LCSIS-GSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIP 292
+IS G T D++ NL S + + F V + G +FSG +
Sbjct: 414 PATISDGGSYTEPDITWNLPS-YTNEVSYTFSQPVTIGKGTTTFSGTVT 461
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 92.0 bits (229), Expect = 6e-20
Identities = 67/377 (17%), Positives = 139/377 (36%), Gaps = 51/377 (13%)
Query: 10 RLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNIS--SNFVSIDLSF 67
L++L +N N L + + + L L + ++ + ++ ++ +N + L
Sbjct: 66 YLNNLTQINFSNNQLTDITP----LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFN 121
Query: 68 NQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLS----DNKLAIIQNMSSGC 123
NQ+ P ++ L L L N + + +L N++ ++ +++
Sbjct: 122 NQITDIDPLK--NLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVTDLKPLAN-- 175
Query: 124 LKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQN 183
L LE L + N + I L ++++ L ++N ++ +G + L+ L+ N
Sbjct: 176 LTT-LERLDISSNKVSD-ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGN 231
Query: 184 SLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSS--FLNLSKNRFSR 241
L D+ + L +L+ +D+++N + PL + L L N+ S
Sbjct: 232 QLKDIGTL---ASLTNLTD--------LDLANNQISN-LAPLSGLTKLTELKLGANQISN 279
Query: 242 SISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNI 301
L + + LT ++L+ N L +L L L N+ S P + L +
Sbjct: 280 ISPLAGL--TALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP--VSSLTKL 333
Query: 302 QTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDL 361
Q F N+ + LT ++ N+ TP + L L
Sbjct: 334 QRLFFYN--NKVSDVSSLANLTNIN-------WLSAGHNQISDLTPLA--NLTRITQLGL 382
Query: 362 SLNNISGKIPKCFNNFT 378
+ + N +
Sbjct: 383 NDQAWTNAPVNYKANVS 399
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 91.2 bits (227), Expect = 1e-19
Identities = 72/494 (14%), Positives = 155/494 (31%), Gaps = 106/494 (21%)
Query: 50 LRPLSNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNM---- 105
+ + ++ + L + ++ + + + L ++ +
Sbjct: 17 IFTDTALA-EKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK--SIDGVEYLNNLT 71
Query: 106 -LNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGT 164
+N S+N+L I + + L L + + N I L +++ L L +N +
Sbjct: 72 QINFSNNQLTDITPLKN--LTK-LVDILMNNNQIAD-ITPLANLTNLTGLTLFNNQITDI 127
Query: 165 INKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPP 224
+ + L LS N+++D++ + L L + + + + P
Sbjct: 128 DP--LKNLTNLNRLELSSNTISDISAL---SGLTSLQQ--------LSFGNQVTD--LKP 172
Query: 225 LPSNSS--FLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDL 282
L + ++ L++S N+ S L ++ L + ++N +S P + +L L L
Sbjct: 173 LANLTTLERLDISSNKVSDISVLAKLT--NLESLIATNNQISDITPLG--ILTNLDELSL 228
Query: 283 GNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKF 342
N ++ L N+ + L +N+
Sbjct: 229 NGNQLKD--IGTLASLTNLTD-------------------------------LDLANNQI 255
Query: 343 HGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPY 402
P L L L N IS P TA+T ++ +
Sbjct: 256 SNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQL------------ 299
Query: 403 VHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRN 462
S L + L L N ++ + L L L N
Sbjct: 300 ----------------EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFYNN 341
Query: 463 HLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTGTQL 522
++ + + L ++++L NQ+ P L+ L+ ++ + L+ +
Sbjct: 342 KVS--DVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKAN 397
Query: 523 QSFNGSVYAGNPEL 536
S +V L
Sbjct: 398 VSIPNTVKNVTGAL 411
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 88.1 bits (219), Expect = 9e-19
Identities = 56/302 (18%), Positives = 122/302 (40%), Gaps = 42/302 (13%)
Query: 11 LHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNIS--SNFVSIDLSFN 68
L SL+ L+ N + + + L +L+ L S + +S ++ +N S+ + N
Sbjct: 155 LTSLQQLSFG-NQVTDLKP----LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNN 209
Query: 69 QLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNM-----LNLSDNKLAIIQNMSSGC 123
Q+ P + L+ LSL N+L+ ++ L+L++N+++ + +S
Sbjct: 210 QISDITPLG--ILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSG-- 263
Query: 124 LKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQN 183
L L L L N + I L G +++ L L++N L I + L L N
Sbjct: 264 LTK-LTELKLGANQISN-ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFN 319
Query: 184 SLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSS--FLNLSKNRFSR 241
+++D++ + L L + +N + L + ++ +L+ N+ S
Sbjct: 320 NISDISPV---SSLTKLQR--------LFFYNNKVSD-VSSLANLTNINWLSAGHNQISD 367
Query: 242 SISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRI-PDSMGFLQN 300
L ++ +++T + L+ + + ++ I + N I P ++ +
Sbjct: 368 LTPLANL--TRITQLGLNDQAWTNAPVN---YKANVSIPNTVKNVTGALIAPATISDGGS 422
Query: 301 IQ 302
Sbjct: 423 YT 424
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 6e-24
Identities = 55/289 (19%), Positives = 111/289 (38%), Gaps = 38/289 (13%)
Query: 11 LHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNIS--SNFVSIDLSFN 68
L +L YLNL N + + S + L L L + + +S + +N + L+ +
Sbjct: 65 LTNLEYLNLNGNQITDISP----LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNED 120
Query: 69 QLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNM-----LNLSDNKLAIIQNMSSGC 123
+ P ++ + L+L N NM L ++++K+ + +++
Sbjct: 121 NISDISP--LANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTPIAN-- 175
Query: 124 LKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQN 183
L + L SL L N I L +S+ N + + + +L + N
Sbjct: 176 LTD-LYSLSLNYNQIED-ISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNN 231
Query: 184 SLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSS--FLNLSKNRFSR 241
+TDL+ + L L+ ++I +N I + + LN+ N+ S
Sbjct: 232 KITDLSPL---ANLSQLTW--------LEIGTNQISD-INAVKDLTKLKMLNVGSNQIS- 278
Query: 242 SISLCSISG-SKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSG 289
+ ++ S+L + L++N L + + +L L L N +
Sbjct: 279 --DISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 96.5 bits (241), Expect = 5e-22
Identities = 61/370 (16%), Positives = 136/370 (36%), Gaps = 71/370 (19%)
Query: 11 LHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNIS--SNFVSIDLSFN 68
L L++ ++ + +L S+ L + + I +N ++L+ N
Sbjct: 21 LAEGIRAVLQKASVTDVVT----QEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGN 76
Query: 69 QLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNM-----LNLSDNKLAIIQNMSSGC 123
Q+ P S ++V L +L + N++ N+ L L+++ ++ I +++
Sbjct: 77 QITDISPLS--NLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISDISPLAN-- 130
Query: 124 LKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQN 183
L + SL+L NH + L + + L ++++ + I + L L+ N
Sbjct: 131 LTK-MYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187
Query: 184 SLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSS--FLNLSKNRFSR 241
+ D++ + L L N I P+ + + L + N+ +
Sbjct: 188 QIEDISPL---ASLTSLHY--------FTAYVNQITD-ITPVANMTRLNSLKIGNNKITD 235
Query: 242 SISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNI 301
L ++ S+LT++++ +N +S + L +L++G+N S + L +
Sbjct: 236 LSPLANL--SQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQL 289
Query: 302 QTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDL 361
+ + L +N+ + + L L L
Sbjct: 290 NS-------------------------------LFLNNNQLGNEDMEVIGGLTNLTTLFL 318
Query: 362 SLNNISGKIP 371
S N+I+ P
Sbjct: 319 SQNHITDIRP 328
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 91.8 bits (229), Expect = 2e-20
Identities = 69/439 (15%), Positives = 147/439 (33%), Gaps = 109/439 (24%)
Query: 62 SIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNM-----LNLSDNKLAII 116
++ + PD+ + L + + + L ++ K+A I
Sbjct: 4 TLATLPAPINQIFPDA--DLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVASI 59
Query: 117 QNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLE 176
Q + L N LE L+L N T I L + LY+ N + T ++ + L
Sbjct: 60 QGIEY--LTN-LEYLNLNGNQITD-ISPLSNLVKLTNLYIGTNKI--TDISALQNLTNLR 113
Query: 177 ITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSS--FLNL 234
L++++++D++ + L + S +++ +NH + PL + + +L +
Sbjct: 114 ELYLNEDNISDISPL---ANLTKMYS--------LNLGANHNLSDLSPLSNMTGLNYLTV 162
Query: 235 SKNRFSRSISLCSISGSKLTYIDLSSNLLS-----GKLPDCWWMFDSLVILDLGNNSFSG 289
++++ + +++ L + L+ N + L SL N +
Sbjct: 163 TESKVKDVTPIANLT--DLYSLSLNYNQIEDISPLASLT-------SLHYFTAYVNQITD 213
Query: 290 RIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQ 349
P + + + + +++ +NK +P
Sbjct: 214 ITP--VANMTRLNS-------------------------------LKIGNNKITDLSPLA 240
Query: 350 LCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQ 409
L L++ N IS + T + + V +++
Sbjct: 241 NLSQ--LTWLEIGTNQISD--INAVKDLTKLK-------MLNVGSNQISDISVLNN---- 285
Query: 410 DKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNS 469
L + SL L++N+L E I L L L LS+NH+T +
Sbjct: 286 -----------------LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT--DI 326
Query: 470 PKIGQLKSLDFLDLSRNQL 488
+ L +D D + +
Sbjct: 327 RPLASLSKMDSADFANQVI 345
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 4e-17
Identities = 49/284 (17%), Positives = 108/284 (38%), Gaps = 52/284 (18%)
Query: 10 RLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNIS--SNFVSIDLSF 67
L L L + N + + S + L +L+ L + + +S ++ + S++L
Sbjct: 86 NLVKLTNLYIGTNKITDIS----ALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGA 141
Query: 68 NQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNM-----LNLSDNKLAIIQNMSSG 122
N S +M L +L++ ++++ P N+ L+L+ N++ I ++S
Sbjct: 142 NHNL-SDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPLAS- 197
Query: 123 CLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQ 182
L + L VN T I + + + L + +N + + + +L +
Sbjct: 198 -LTS-LHYFTAYVNQITD-ITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGT 252
Query: 183 NSLTDLANI--------------QIK-----GKLPDLSSRFGTSNPGIDISSNHFEGPIP 223
N ++D+ + QI L L+S + +++N
Sbjct: 253 NQISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNS--------LFLNNNQLGNEDM 304
Query: 224 PLPSNSS---FLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLS 264
+ + L LS+N + L S+S K+ D ++ ++
Sbjct: 305 EVIGGLTNLTTLFLSQNHITDIRPLASLS--KMDSADFANQVIK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 2e-09
Identities = 23/98 (23%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
Query: 431 KSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVG 490
LE+ +N+++ + DL L LN+ N ++ + + L L+ L L+ NQL
Sbjct: 246 TWLEIGTNQISD--INAVKDLTKLKMLNVGSNQIS--DISVLNNLSQLNSLFLNNNQLGN 301
Query: 491 GIPSSLSPLSVLSVMDLSYNNLSGKIPTG--TQLQSFN 526
+ L+ L+ + LS N+++ P +++ S +
Sbjct: 302 EDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSAD 339
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 6e-09
Identities = 19/99 (19%), Positives = 44/99 (44%), Gaps = 7/99 (7%)
Query: 430 IKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLV 489
+ +L + +NK+ + +L L L L+ ++++ + L + L+L N +
Sbjct: 90 LTNLYIGTNKITD--ISALQNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNL 145
Query: 490 GGIPSSLSPLSVLSVMDLSYNNLSGKIPTG--TQLQSFN 526
S LS ++ L+ + ++ + + P T L S +
Sbjct: 146 -SDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLS 183
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 8e-08
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 425 STLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLS 484
L +K L + SN+++ + +L L +L L+ N L ++ IG L +L L LS
Sbjct: 262 KDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS 319
Query: 485 RNQLVGGIPSSLSPLSVLSVMDLSYNNLS 513
+N + L+ LS + D + +
Sbjct: 320 QNHITD--IRPLASLSKMDSADFANQVIK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 2e-07
Identities = 19/104 (18%), Positives = 45/104 (43%), Gaps = 8/104 (7%)
Query: 425 STLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLS 484
S + + L ++ +K+ I +L L +L+L+ N + + + L SL +
Sbjct: 152 SNMTGLNYLTVTESKVKD--VTPIANLTDLYSLSLNYNQIE--DISPLASLTSLHYFTAY 207
Query: 485 RNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTG--TQLQSFN 526
NQ+ + ++ ++ L+ + + N ++ P +QL
Sbjct: 208 VNQITD--ITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLE 249
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 4e-07
Identities = 18/90 (20%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 425 STLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLS 484
L ++ L L+ + ++ + +L + +LNL NH SP + + L++L ++
Sbjct: 107 QNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVT 163
Query: 485 RNQLVGGIPSSLSPLSVLSVMDLSYNNLSG 514
+++ + ++ L+ L + L+YN +
Sbjct: 164 ESKVKD--VTPIANLTDLYSLSLNYNQIED 191
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 1e-06
Identities = 15/90 (16%), Positives = 41/90 (45%), Gaps = 6/90 (6%)
Query: 425 STLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLS 484
++L + N++ + ++ L +L + N +T + + L L +L++
Sbjct: 196 ASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKIT--DLSPLANLSQLTWLEIG 251
Query: 485 RNQLVGGIPSSLSPLSVLSVMDLSYNNLSG 514
NQ+ +++ L+ L ++++ N +S
Sbjct: 252 TNQISD--INAVKDLTKLKMLNVGSNQISD 279
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 3e-06
Identities = 21/100 (21%), Positives = 42/100 (42%), Gaps = 7/100 (7%)
Query: 425 STLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLS 484
+ L L + V +E +L + L ++ + + I L +L++L+L+
Sbjct: 19 ADLAEGIRAVLQKASVTDVVTQE--ELESITKLVVAGEKVA--SIQGIEYLTNLEYLNLN 74
Query: 485 RNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTGTQLQS 524
NQ+ S LS L L+ + + N ++ I L +
Sbjct: 75 GNQITD--ISPLSNLVKLTNLYIGTNKIT-DISALQNLTN 111
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 5e-05
Identities = 16/98 (16%), Positives = 38/98 (38%), Gaps = 8/98 (8%)
Query: 431 KSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVG 490
+L +N P+ DL + L + +T +L+S+ L ++ ++
Sbjct: 3 ATLATLPAPINQIFPDA--DLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVAS 58
Query: 491 GIPSSLSPLSVLSVMDLSYNNLSGKIPTG--TQLQSFN 526
+ L+ L ++L+ N ++ P +L +
Sbjct: 59 --IQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLY 94
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 1e-22
Identities = 64/300 (21%), Positives = 110/300 (36%), Gaps = 45/300 (15%)
Query: 5 LMRSLRLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNISSNFVSID 64
MR+ + LN+ E+ L D + + TL L L + +++
Sbjct: 33 KMRACLNNGNAVLNVGESGLTTLPD---CLPA--HITTLVIPDNNLTSLPALPPELRTLE 87
Query: 65 LSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCL 124
+S NQL S+P ++ L S L L + N+L + +
Sbjct: 88 VSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPSGL--CKLWIFGNQLTSLPVLPP--- 141
Query: 125 KNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNS 184
L+ L + N +P L S + +L+ +N L ++ + +L +S N
Sbjct: 142 --GLQELSVSDNQLAS-LPAL--PSELCKLWAYNNQLT-SLPMLPSGLQELS---VSDNQ 192
Query: 185 LTDL-ANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSI 243
L L +L L +N +P LPS L +S NR +
Sbjct: 193 LASLPTLP---SELYKL-----------WAYNNRLT-SLPALPSGLKELIVSGNRLTSLP 237
Query: 244 SLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQT 303
L S+L + +S N L+ LP L+ L + N + R+P+S+ L + T
Sbjct: 238 VLP----SELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETT 288
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 70.3 bits (172), Expect = 8e-13
Identities = 46/238 (19%), Positives = 83/238 (34%), Gaps = 27/238 (11%)
Query: 11 LHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNISSNFVSIDLSFNQL 70
L+ L++ +N LA+ L L +++ L L + S + +S NQL
Sbjct: 140 PPGLQELSVSDNQLASLPAL------PSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQL 193
Query: 71 QGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNM--LNLSDNKLAIIQNMSSGCLKNSL 128
S+P + L + L P + L +S N+L + L + L
Sbjct: 194 A-SLPTLPSELYKLWAYNNRLTSL----PALPSGLKELIVSGNRLTSL-----PVLPSEL 243
Query: 129 ESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDL 188
+ L + N T +P L S + L + N L + +S+ + L N L++
Sbjct: 244 KELMVSGNRLTS-LPML--PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER 299
Query: 189 ANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGP-IPPLPSNSSFLNLSKNRFSRSISL 245
++ +++S G S P I P ++ L R
Sbjct: 300 TLQALR----EITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPA 353
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 7e-07
Identities = 22/100 (22%), Positives = 38/100 (38%), Gaps = 12/100 (12%)
Query: 425 STLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLS 484
+ +++LE+S N+L ++P L+ L + HL L L +
Sbjct: 78 ALPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLP-------ALPSGLCKLWIF 129
Query: 485 RNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTGTQLQS 524
NQL +P L L +S N L+ ++L
Sbjct: 130 GNQL-TSLPVLPPGLQEL---SVSDNQLASLPALPSELCK 165
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 1e-05
Identities = 22/97 (22%), Positives = 31/97 (31%), Gaps = 12/97 (12%)
Query: 430 IKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLV 489
I +L + N L ++P L L +S N LT L L L
Sbjct: 63 ITTLVIPDNNLT-SLPALP---PELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHL- 116
Query: 490 GGIPSSLSPLSVLSVMDLSYNNLSGKIPTGTQLQSFN 526
P+ S L L + N L+ LQ +
Sbjct: 117 ---PALPSGLCKL---WIFGNQLTSLPVLPPGLQELS 147
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 1e-05
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 12/89 (13%)
Query: 425 STLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLS 484
+ + L +N+L ++P GL L +S N LT +LK L +S
Sbjct: 198 TLPSELYKLWAYNNRLT-SLPALP---SGLKELIVSGNRLTSL-PVLPSELKELM---VS 249
Query: 485 RNQLVGGIPSSLSPLSVLSVMDLSYNNLS 513
N+L +P S L L + N L+
Sbjct: 250 GNRLT-SLPMLPSGLLSL---SVYRNQLT 274
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 5e-05
Identities = 26/152 (17%), Positives = 46/152 (30%), Gaps = 7/152 (4%)
Query: 11 LHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNISSNFVSIDLSFNQL 70
L+ L + N L + LK L L L + S +S+ + NQL
Sbjct: 220 PSGLKELIVSGNRLTSLPV------LPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQL 273
Query: 71 QGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLES 130
+P+S H+ ++L N L + + + II+ +G
Sbjct: 274 T-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETR 332
Query: 131 LHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLN 162
G + R ++ N
Sbjct: 333 ALHLAAADWLVPAREGEPAPADRWHMFGQEDN 364
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 4e-04
Identities = 25/116 (21%), Positives = 40/116 (34%), Gaps = 16/116 (13%)
Query: 425 STLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLS 484
++ L +S N+L ++P +L L N LT L+ L +S
Sbjct: 138 VLPPGLQELSVSDNQLA-SLPALPSELC---KLWAYNNQLT-SLPMLPSGLQELS---VS 189
Query: 485 RNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTGTQLQSFNGSVYAGNPELCGLP 540
NQL +P+ S L L + +L + L+ L LP
Sbjct: 190 DNQLA-SLPTLPSELYKLWAYNNRLTSLPALP---SGLKEL----IVSGNRLTSLP 237
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 97.9 bits (244), Expect = 9e-22
Identities = 80/535 (14%), Positives = 159/535 (29%), Gaps = 87/535 (16%)
Query: 13 SLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNIS----SNFVSIDLSFN 68
+++ L+L N + + +L+ L S + + + + +DLS N
Sbjct: 27 AMKSLDLSFNKITYIGH--GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84
Query: 69 QLQGSIPDSS-QHMVYLEHLSLMFNEL-EGGIPKFFGNM-----LNLSD-NKLAIIQNMS 120
L S+ S + L++L+LM N G+ F N+ L + + + I+ +
Sbjct: 85 HLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRID 143
Query: 121 SGCLKNSLESLHLEVNHFTG-PIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITC 179
L + L L ++ L + L L + + + +
Sbjct: 144 FAGLTS-LNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLE 202
Query: 180 LSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLN------ 233
L +L S + G ++ F + L L+
Sbjct: 203 LRDTNLARF-QFSPLPVDEVSSPMKKLAFRGSVLTDESFN-ELLKLLRYILELSEVEFDD 260
Query: 234 --------LSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNN 285
+ + L + + + + L L + + + + + + N+
Sbjct: 261 CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS 320
Query: 286 SFSGRIPDSMGFLQNIQT------QFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKS 339
L++++ ++ W L T + L
Sbjct: 321 KVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQT----------LVLSQ 370
Query: 340 NKFH--GKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTF 397
N KT L L LD+S N +P M
Sbjct: 371 NHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMR---------------- 413
Query: 398 VGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVAL 457
+++ S +V+ ++ L++S+N L+ + + L L L
Sbjct: 414 ----FLNLSSTGIRVVK---------TCIPQTLEVLDVSNNNLD-SFS---LFLPRLQEL 456
Query: 458 NLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNL 512
+SRN L P L + +SRNQL L+ L + L N
Sbjct: 457 YISRNKLKTL--PDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 85.2 bits (211), Expect = 1e-17
Identities = 71/489 (14%), Positives = 151/489 (30%), Gaps = 69/489 (14%)
Query: 54 SNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNM-----LNL 108
S +++ S+DLSFN++ + L+ L L + + F ++ L+L
Sbjct: 22 SGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81
Query: 109 SDNKLAIIQNMSSGCLKN--SLESLHLEVNHFT--GPIPDLGGFSSMKRLYLSDNLLNGT 164
SDN L ++SS SL+ L+L N + G ++++ L + +
Sbjct: 82 SDNHL---SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSE 138
Query: 165 INK-SIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIP 223
I + + L + SL + + +K + D+ + + +
Sbjct: 139 IRRIDFAGLTSLNELEIKALSLRNYQSQSLKS-IRDIHH--------LTLHLSESA---- 185
Query: 224 PLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLG 283
L + S+ + + L + L
Sbjct: 186 ---------FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLT 236
Query: 284 NNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEE---RFVRLKSN 340
+ SF+ + L+ + +F N F E E R + +
Sbjct: 237 DESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQF 296
Query: 341 KFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGP 400
++ + + + + + ++ +
Sbjct: 297 YLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLE-------FL---------- 339
Query: 401 PYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLN--GAVPEEIMDLVGLVALN 458
+ ++ + G +++L LS N L E ++ L L +L+
Sbjct: 340 -DLSENLMVEEYLKNSACKG-----AWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLD 393
Query: 459 LSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPT 518
+SRN + + FL+LS + + + + L V+D+S NNL
Sbjct: 394 ISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLD-SFSL 448
Query: 519 G-TQLQSFN 526
+LQ
Sbjct: 449 FLPRLQELY 457
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 79.4 bits (196), Expect = 9e-16
Identities = 72/386 (18%), Positives = 129/386 (33%), Gaps = 67/386 (17%)
Query: 11 LHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLT-SHSCYLRPLSNIS----SNFVSIDL 65
L SL+YLNL N + L +L+TL + + I ++ +++
Sbjct: 97 LSSLKYLNLMGNPYQTLGV-TSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEI 155
Query: 66 SFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNM-----LNLSDNKLAIIQ--- 117
L+ S + + + HL+L +E + F + L L D LA Q
Sbjct: 156 KALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSP 215
Query: 118 ----NMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIF 173
+SS K + L F + L + + D LNG + + +
Sbjct: 216 LPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESD 275
Query: 174 KL-EITCLSQNSLT--DLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSS 230
+ E+ + ++ + + L + S I + ++ +
Sbjct: 276 VVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLL-EKVKRITVENSKVFLVPCSFSQHLK 334
Query: 231 ---FLNLSKNRFSRSI---SLCSISGSKLTYIDLSSNLLSGKLPDCWWMFD---SLVILD 281
FL+LS+N S C + L + LS N L + + +L LD
Sbjct: 335 SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLD 393
Query: 282 LGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNK 341
+ N+F +PDS + + + RF+ L S
Sbjct: 394 ISRNTFH-PMPDSCQWPEKM-------------------------------RFLNLSSTG 421
Query: 342 FHGKTPFQLCQFAFLQVLDLSLNNIS 367
+ C L+VLD+S NN+
Sbjct: 422 I---RVVKTCIPQTLEVLDVSNNNLD 444
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 76.7 bits (189), Expect = 6e-15
Identities = 62/328 (18%), Positives = 111/328 (33%), Gaps = 54/328 (16%)
Query: 10 RLHSLRYLNLEENNLANCSDW-FQVIGKLHSLKTLTSHSCYLRPLSNIS----------- 57
L S+RYL L + NLA V +K L L S
Sbjct: 194 ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL 253
Query: 58 SNFVSIDLSFNQLQGSIPDSSQ--------HMVYLEHLSLMFNELEGGIPKFFGNM---- 105
S D + N L P S V + L + L + + +
Sbjct: 254 SEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVK 313
Query: 106 -LNLSDNKLAIIQNMSSGCLKN--SLESLHLEVNHFTGPIPD----LGGFSSMKRLYLSD 158
+ + ++K + + ++ SLE L L N G + S++ L LS
Sbjct: 314 RITVENSK---VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQ 370
Query: 159 NLLNGTINKSIGQIFKLE-ITCL--SQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISS 215
N L ++ K+ + L+ +T L S+N+ + + + +++SS
Sbjct: 371 NHLR-SMQKTGEILLTLKNLTSLDISRNTFHPMPDSC--QWPEKMRF--------LNLSS 419
Query: 216 NHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFD 275
+P L++S N + S+ +L + +S N L LPD +F
Sbjct: 420 TGIRVVKTCIPQTLEVLDVSNNN----LDSFSLFLPRLQELYISRNKLK-TLPDAS-LFP 473
Query: 276 SLVILDLGNNSFSGRIPDSMGFLQNIQT 303
L+++ + N L ++Q
Sbjct: 474 VLLVMKISRNQLKSVPDGIFDRLTSLQK 501
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 1e-13
Identities = 59/421 (14%), Positives = 132/421 (31%), Gaps = 69/421 (16%)
Query: 106 LNLSDNKLAII-QNMSSGCLKNSLESLHLEVNHFTG-PIPDLGGFSSMKRLYLSDNLLNG 163
+ I +++ +++SL L N T DL ++++ L L + +N
Sbjct: 10 CDGRSRSFTSIPSGLTA-----AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT 64
Query: 164 TINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHF-EGPI 222
+ + LE LS N L+ L++ L L +++ N + +
Sbjct: 65 IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGP-LSSLKY--------LNLMGNPYQTLGV 115
Query: 223 PPLPSNSS---FLNLSKNRFSRSISLCSISG-SKLTYIDLSSNLLSGKLPDCWWMFDSLV 278
L N + L + I +G + L +++ + L +
Sbjct: 116 TSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIH 175
Query: 279 ILDLGNNSFSGRIPDSMGFLQNIQT---QFTQQQFNRRTVFIVWELLTTQTFESWEERFV 335
L L + + + L +++ + T + + V E+ + ++ +
Sbjct: 176 HLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVL 235
Query: 336 RLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYY 395
+S K + + + ++ D +LN + P + + + + +
Sbjct: 236 TDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVT-------- 287
Query: 396 TFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLV 455
I+ L + L + L +
Sbjct: 288 ----------------------------------IRRLHIPQFYLFYDLSTVYSLLEKVK 313
Query: 456 ALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLS---VMDLSYNNL 512
+ + + + LKSL+FLDLS N +V + + + LS N+L
Sbjct: 314 RITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL 373
Query: 513 S 513
Sbjct: 374 R 374
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 66.7 bits (163), Expect = 8e-12
Identities = 58/306 (18%), Positives = 96/306 (31%), Gaps = 58/306 (18%)
Query: 1 MRKLLMRSLRLHSLRYLNLEENNLA----NCSDWFQVIGKLH--SLKTLTSHSCYLRPLS 54
+ KLL L L + + + N L + SD +GK+ +++ L YL
Sbjct: 243 LLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDL 302
Query: 55 NIS----SNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPK---FFGNM-- 105
+ I + +++ SQH+ LE L L N + K G
Sbjct: 303 STVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS 362
Query: 106 ---LNLSDNKLAIIQNMSSGCLK-NSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLL 161
L LS N L +Q L +L SL + N F M+ L LS
Sbjct: 363 LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSST-- 420
Query: 162 NGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGP 221
I + L +D+S+N+ +
Sbjct: 421 --------------GIRVVKTCIPQTLEV--------------------LDVSNNNLDS- 445
Query: 222 IPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILD 281
L +S+N+ ++ S+ L + +S N L + SL +
Sbjct: 446 FSLFLPRLQELYISRNKLK-TLPDASLF-PVLLVMKISRNQLKSVPDGIFDRLTSLQKIW 503
Query: 282 LGNNSF 287
L N +
Sbjct: 504 LHTNPW 509
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 9e-05
Identities = 52/336 (15%), Positives = 94/336 (27%), Gaps = 63/336 (18%)
Query: 212 DISSNHFEGPIPP-LPSNSSFLNLSKNRFSRSISLCSISG-SKLTYIDLSSNLLSGKLPD 269
D S F IP L + L+LS N+ + I + + L + L S+ ++ D
Sbjct: 11 DGRSRSFTS-IPSGLTAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGD 68
Query: 270 CWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFES 329
++ SL LDL +N S G L +++
Sbjct: 69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKY-------------------------- 102
Query: 330 WEERFVRLKSNKFHGKTPFQLCQ-FAFLQVLDLSLNNISGKIPK-CFNNFTAMTQERSSD 387
+ L N + L LQ L + +I + F T++
Sbjct: 103 -----LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLN------ 151
Query: 388 PTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEE 447
+++ + S + + I L L ++ +
Sbjct: 152 -ELEIKALSLR---NYQSQSLKS----------------IRDIHHLTLHLSESAFLLEIF 191
Query: 448 IMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDL 507
L + L L +L + + + + S + L L L
Sbjct: 192 ADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYIL 251
Query: 508 SYNNLSGKIPTGTQLQSFNGSVYAGNPELCGLPLPN 543
+ + T L FN S EL +
Sbjct: 252 ELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVT 287
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 97.2 bits (242), Expect = 1e-21
Identities = 73/470 (15%), Positives = 148/470 (31%), Gaps = 64/470 (13%)
Query: 58 SNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNM-----LNLSDNK 112
+ + ++ + L+ ++ Q ++ L L N L LNLS N
Sbjct: 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69
Query: 113 LAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQI 172
L ++ S L L +L L N+ +L S++ L+ ++N ++ ++ S GQ
Sbjct: 70 LYETLDLES--LST-LRTLDLNNNYVQ----ELLVGPSIETLHAANNNIS-RVSCSRGQ- 120
Query: 173 FKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEG-PIPPLPSNSS- 230
+ L+ N +T L ++ G + +D+ N + L ++S
Sbjct: 121 -GKKNIYLANNKITMLRDLDE-GCRSRVQY--------LDLKLNEIDTVNFAELAASSDT 170
Query: 231 --FLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFS 288
LNL N +KL +DLSSN L+ + + + + L NN
Sbjct: 171 LEHLNLQYNFIYDVKGQVVF--AKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV 227
Query: 289 GRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPF 348
I ++ F QN++ + N + T + F S +R + T
Sbjct: 228 -LIEKALRFSQNLEH--FDLRGNG------FHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278
Query: 349 QLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSF 408
+ + + A+ ++ + +
Sbjct: 279 NEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSG------------------ 320
Query: 409 QDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQN 468
RE ++ + ++ + + + + + L + L Q
Sbjct: 321 -QGSETERLECERENQARQ---REIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQV 376
Query: 469 SPKIGQLKSLDFLDLSRNQLVG--GIPSSLSPLSVLSVMDLSYNNLSGKI 516
S LD + SPL +L + Y + +
Sbjct: 377 SNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQ 426
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 90.7 bits (225), Expect = 1e-19
Identities = 52/386 (13%), Positives = 116/386 (30%), Gaps = 48/386 (12%)
Query: 11 LHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLS-NISSNFVSIDLSFNQ 69
L +LR L+L N + Q + S++TL + + + +S + +I L+ N+
Sbjct: 79 LSTLRTLDLNNNYV-------QELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNK 131
Query: 70 LQGSIPDSSQHMVYLEHLSLMFNELEG-GIPKFFGNM-----LNLSDNKLAIIQNMSSGC 123
+ +++L L NE++ + + LNL N + +
Sbjct: 132 ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV---KGQV 188
Query: 124 LKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLE------- 176
+ L++L L N P+ + + + L +N L I K++ LE
Sbjct: 189 VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGN 247
Query: 177 -ITCLSQ-------NSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSN 228
C + + +A +K L + T + E P
Sbjct: 248 GFHCGTLRDFFSKNQRVQTVAKQTVKK-LTGQNEEECTVPTLGHYGAYCCEDLPAPFADR 306
Query: 229 SSFLNLSKNRF-------SRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILD 281
L ++ + + + ++ ID + + + L+
Sbjct: 307 LIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLE 366
Query: 282 LGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNK 341
+ + N + + + EL +S + +
Sbjct: 367 QKKKALD-------EQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRY 419
Query: 342 FHGKTPFQLCQFAFLQVLDLSLNNIS 367
Q Q ++ D+ + +
Sbjct: 420 EEMYVEQQSVQNNAIRDWDMYQHKET 445
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 64.1 bits (156), Expect = 5e-11
Identities = 23/106 (21%), Positives = 46/106 (43%), Gaps = 3/106 (2%)
Query: 421 REYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDF 480
E + K +++ + L A+ + L+LS N L+ ++ + L+
Sbjct: 3 HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62
Query: 481 LDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTGTQLQSFN 526
L+LS N L L LS L +DL+ N + ++ G +++ +
Sbjct: 63 LNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-ELLVGPSIETLH 105
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 5e-08
Identities = 16/95 (16%), Positives = 34/95 (35%), Gaps = 5/95 (5%)
Query: 431 KSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVG 490
++L ++N ++ V G + L+ N +T G + +LDL N++
Sbjct: 102 ETLHAANNNIS-RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158
Query: 491 -GIPSSLSPLSVLSVMDLSYNNLSGKIPTGTQLQS 524
+ L ++L YN + +
Sbjct: 159 VNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAK 192
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 3e-07
Identities = 43/274 (15%), Positives = 82/274 (29%), Gaps = 49/274 (17%)
Query: 242 SISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNI 301
+I +G++ ++ + L L ++ LDL N S + +
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 302 QTQFTQQQFNRRTVFIVWELLTTQTFESWEE-RFVRLKSNKFHGKTPFQLCQFAFLQVLD 360
+ N L T ES R + L +N +L ++ L
Sbjct: 61 --ELLNLSSNV--------LYETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLH 105
Query: 361 LSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSG 420
+ NNIS ++ + ++ I + +
Sbjct: 106 AANNNIS-RVS--CSRGQGKKNIYLANNKITM----------LRDLDE------------ 140
Query: 421 REYRSTLGLIKSLELSSNKLNG-AVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLD 479
++ L+L N+++ E L LNL N + + L
Sbjct: 141 ----GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY--DVKGQVVFAKLK 194
Query: 480 FLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLS 513
LDLS N+L + + ++ + L N L
Sbjct: 195 TLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV 227
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 3e-06
Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
Query: 443 AVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVL 502
A+ E + ++ + L + ++ LDLS N L + L+P + L
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 503 SVMDLSYNNLSGKIPTGTQLQS 524
+++LS N L L +
Sbjct: 61 ELLNLSSNVLYE-TLDLESLST 81
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 1e-05
Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 11/90 (12%)
Query: 431 KSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVG 490
+ L LSSN L ++ L L L+L+ N++ ++ S++ L + N +
Sbjct: 61 ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR 113
Query: 491 GIPSSLSPLSVLSVMDLSYNNLSGKIPTGT 520
S + L+ N ++ +
Sbjct: 114 VSCSRGQGKKNI---YLANNKIT-MLRDLD 139
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 88.1 bits (219), Expect = 3e-19
Identities = 50/309 (16%), Positives = 102/309 (33%), Gaps = 49/309 (15%)
Query: 11 LHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNISSNFVSIDLSFNQL 70
+ + + +++L + ++K L DLS N L
Sbjct: 9 GNRYKIEKVTDSSLKQALA--SLRQSAWNVKEL--------------------DLSGNPL 46
Query: 71 QGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGN----MLNLSDNKLAIIQNMSSGCLKN 126
LE L+L N L L+L++N + + S
Sbjct: 47 SQISAADLAPFTKLELLNLSSNVLYE-TLDLESLSTLRTLDLNNNYVQELLVGPS----- 100
Query: 127 SLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLT 186
+E+LH N+ + + K +YL++N + + G +++ L N +
Sbjct: 101 -IETLHAANNNISR-VS-CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157
Query: 187 DLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSS--FLNLSKNRFSRSIS 244
+ ++ L +++ N + + L+LS N+ + +
Sbjct: 158 TVNFAELAASSDTLEH--------LNLQYNFIYD-VKGQVVFAKLKTLDLSSNKLA-FMG 207
Query: 245 LCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQ 304
S + +T+I L +N L + +L DL N F F +N + Q
Sbjct: 208 PEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQ 265
Query: 305 FTQQQFNRR 313
+Q ++
Sbjct: 266 TVAKQTVKK 274
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 87.0 bits (216), Expect = 6e-19
Identities = 53/263 (20%), Positives = 103/263 (39%), Gaps = 32/263 (12%)
Query: 50 LRPLSNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNM---- 105
+ + + + ++ + L+ ++ Q ++ L L N L
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 106 -LNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGT 164
LNLS N L ++ S L L +L L N+ +L S++ L+ ++N ++
Sbjct: 62 LLNLSSNVLYETLDLES--LST-LRTLDLNNNYVQ----ELLVGPSIETLHAANNNIS-R 113
Query: 165 INKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEG-PIP 223
++ S GQ + L+ N +T L ++ G + +D+ N +
Sbjct: 114 VSCSRGQ--GKKNIYLANNKITMLRDLDE-GCRSRVQY--------LDLKLNEIDTVNFA 162
Query: 224 PLPSNSS---FLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVIL 280
L ++S LNL N + + +KL +DLSSN L+ + + + +
Sbjct: 163 ELAASSDTLEHLNLQYNFIY-DVK-GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWI 219
Query: 281 DLGNNSFSGRIPDSMGFLQNIQT 303
L NN I ++ F QN++
Sbjct: 220 SLRNNKLV-LIEKALRFSQNLEH 241
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 2e-11
Identities = 23/106 (21%), Positives = 46/106 (43%), Gaps = 3/106 (2%)
Query: 421 REYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDF 480
E + K +++ + L A+ + L+LS N L+ ++ + L+
Sbjct: 3 HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62
Query: 481 LDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTGTQLQSFN 526
L+LS N L L LS L +DL+ N + ++ G +++ +
Sbjct: 63 LNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-ELLVGPSIETLH 105
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 2e-11
Identities = 36/243 (14%), Positives = 71/243 (29%), Gaps = 36/243 (14%)
Query: 10 RLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNISSNFVSIDLSFNQ 69
S+ L+ NN++ S + K + L+ N+
Sbjct: 97 VGPSIETLHAANNNISRVS-----CSRGQGKKNI--------------------YLANNK 131
Query: 70 LQGSIPDSSQHMVYLEHLSLMFNELEG-GIPKFFGNM-----LNLSDNKLAIIQNMSSGC 123
+ +++L L NE++ + + LNL N + +
Sbjct: 132 ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV---KGQV 188
Query: 124 LKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQN 183
+ L++L L N P+ + + + L +N L I K++ LE L N
Sbjct: 189 VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGN 247
Query: 184 SLTDLANIQIKGKLPDLSSRFGTSNPGI-DISSNHFEGPIPPLPSNSSFLNLSKNRFSRS 242
K + + + + + P +L R
Sbjct: 248 GFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRL 307
Query: 243 ISL 245
I+L
Sbjct: 308 IAL 310
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 1e-10
Identities = 50/380 (13%), Positives = 105/380 (27%), Gaps = 104/380 (27%)
Query: 126 NSLESLHLEVNHFTGPIPDLG-GFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNS 184
N + + + + L ++K L LS N L+ + KLE+ LS N
Sbjct: 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69
Query: 185 LTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSIS 244
L + ++ L L + +D+++N+ + + PS + L+ + N S
Sbjct: 70 LYETLDL---ESLSTLRT--------LDLNNNYVQE-LLVGPSIET-LHAANNNIS---R 113
Query: 245 LCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSG-RIPDSMGFLQNIQT 303
+ G I L++N ++ + LDL N + ++
Sbjct: 114 VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173
Query: 304 QFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSL 363
+ L+ N + + L+ LDLS
Sbjct: 174 -------------------------------LNLQYNFIYDVKGQVVFAK--LKTLDLSS 200
Query: 364 NNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREY 423
N ++ + F +
Sbjct: 201 NKLA-FMGPEFQSAAG-------------------------------------------- 215
Query: 424 RSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPK-IGQLKSLDFLD 482
+ + L +NKL + + + L +L N + + + +
Sbjct: 216 ------VTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268
Query: 483 LSRNQLVGGIPSSLSPLSVL 502
+ + G + L
Sbjct: 269 KQTVKKLTGQNEEECTVPTL 288
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 9e-10
Identities = 43/288 (14%), Positives = 86/288 (29%), Gaps = 58/288 (20%)
Query: 232 LNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRI 291
++ + ++++ S + +DLS N LS F L +L+L +N
Sbjct: 15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-T 73
Query: 292 PDSMGFLQNIQT------QFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGK 345
D + L ++T + + T + +N
Sbjct: 74 LD-LESLSTLRTLDLNNNYVQELLVGPS--------IET----------LHAANNNI--- 111
Query: 346 TPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHH 405
+ + + + L+ N I+ + + I
Sbjct: 112 SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-------------- 157
Query: 406 YSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLT 465
+ E ++ ++ L L N + V +++ L L+LS N L
Sbjct: 158 -----------TVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA 204
Query: 466 GQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLS 513
P+ + ++ L N+LV I +L L DL N
Sbjct: 205 -FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 9e-09
Identities = 17/101 (16%), Positives = 35/101 (34%), Gaps = 5/101 (4%)
Query: 425 STLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLS 484
I++L ++N ++ V G + L+ N +T G + +LDL
Sbjct: 96 LVGPSIETLHAANNNIS-RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152
Query: 485 RNQLVG-GIPSSLSPLSVLSVMDLSYNNLSGKIPTGTQLQS 524
N++ + L ++L YN + +
Sbjct: 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAK 192
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 2e-08
Identities = 23/165 (13%), Positives = 48/165 (29%), Gaps = 58/165 (35%)
Query: 356 LQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPT 415
++ ++ +++ + +
Sbjct: 12 YKIEKVTDSSLKQALASLRQSAWN------------------------------------ 35
Query: 416 WKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQL 475
+K L+LS N L+ ++ L LNLS N L + + L
Sbjct: 36 --------------VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY--ETLDLESL 79
Query: 476 KSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTGT 520
+L LDL+ N + L + + + NN+S ++
Sbjct: 80 STLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVSCSR 118
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 4e-08
Identities = 43/274 (15%), Positives = 82/274 (29%), Gaps = 49/274 (17%)
Query: 242 SISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNI 301
+I +G++ ++ + L L ++ LDL N S + +
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 302 QTQFTQQQFNRRTVFIVWELLTTQTFESWEE-RFVRLKSNKFHGKTPFQLCQFAFLQVLD 360
+ N L T ES R + L +N +L ++ L
Sbjct: 61 EL--LNLSSNV--------LYETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLH 105
Query: 361 LSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSG 420
+ NNIS ++ + ++ I + +
Sbjct: 106 AANNNIS-RVS--CSRGQGKKNIYLANNKITM----------LRDLDE------------ 140
Query: 421 REYRSTLGLIKSLELSSNKLNG-AVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLD 479
++ L+L N+++ E L LNL N + + L
Sbjct: 141 ----GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY--DVKGQVVFAKLK 194
Query: 480 FLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLS 513
LDLS N+L + + ++ + L N L
Sbjct: 195 TLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV 227
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 3e-06
Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Query: 443 AVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVL 502
A+ E + ++ + L + ++ LDLS N L + L+P + L
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 503 SVMDLSYNNLSGKIPTGTQLQS 524
+++LS N L + L +
Sbjct: 61 ELLNLSSNVLY-ETLDLESLST 81
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 8e-06
Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 11/90 (12%)
Query: 431 KSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVG 490
+ L LSSN L ++ L L L+L+ N++ ++ S++ L + N +
Sbjct: 61 ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR 113
Query: 491 GIPSSLSPLSVLSVMDLSYNNLSGKIPTGT 520
S + L+ N ++ +
Sbjct: 114 VSCSRGQGKKNI---YLANNKIT-MLRDLD 139
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 1e-18
Identities = 62/291 (21%), Positives = 120/291 (41%), Gaps = 42/291 (14%)
Query: 13 SLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNISSNFVSIDLSFNQLQG 72
L L N+L + Q SLK+L + L+ LS++ + +S NQL+
Sbjct: 92 HLESLVASCNSLTELPELPQ------SLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLE- 144
Query: 73 SIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNM--LNLSDNKLAIIQNMSSGCLKNSLES 130
+P+ +L+ + + N L+ +P ++ + +N+L + + + L L +
Sbjct: 145 KLPELQN-SSFLKIIDVDNNSLK-KLPDLPPSLEFIAAGNNQLEELPELQN--LPF-LTA 199
Query: 131 LHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLAN 190
++ + N +PDL S++ + +N+L + + L N L
Sbjct: 200 IYADNNSLKK-LPDL--PLSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK---- 250
Query: 191 IQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISG 250
+ P L + +++ N+ +P LP + +FL++S+N FS L
Sbjct: 251 -TLPDLPPSLEA--------LNVRDNYLTD-LPELPQSLTFLDVSENIFSGLSELP---- 296
Query: 251 SKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNI 301
L Y++ SSN + L D SL L++ NN +P L+ +
Sbjct: 297 PNLYYLNASSNEIR-SLCDLP---PSLEELNVSNNKLI-ELPALPPRLERL 342
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 83.5 bits (207), Expect = 3e-17
Identities = 75/467 (16%), Positives = 150/467 (32%), Gaps = 120/467 (25%)
Query: 49 YLRPLSNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNL 108
++ P + ++ + L +P ++++ ++E E P G +
Sbjct: 2 FINPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60
Query: 109 SDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKS 168
+ ++L CL L L + +P+L ++ L S N L + +
Sbjct: 61 AVSRL-------RDCLDRQAHELELNNLGLS-SLPEL--PPHLESLVASCNSLT-ELPEL 109
Query: 169 IGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSN 228
+ L + + +L+DL P L + +S+N E +P L ++
Sbjct: 110 PQSLKSLLVDNNNLKALSDL--------PPLLEY--------LGVSNNQLEK-LPELQNS 152
Query: 229 SS--FLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNS 286
S +++ N + L L +I +N L +LP+ + L + NNS
Sbjct: 153 SFLKIIDVDNNSLKKLPDLPP----SLEFIAAGNNQLE-ELPELQNL-PFLTAIYADNNS 206
Query: 287 FSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKT 346
++PD L++I +N +
Sbjct: 207 LK-KLPDLPLSLESIV----------------------------------AGNNIL--EE 229
Query: 347 PFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHY 406
+L FL + N + +P + A+ +
Sbjct: 230 LPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNY-------------------- 268
Query: 407 SFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTG 466
+ + L++S N +G + E L LN S N +
Sbjct: 269 -------------LTDLPELPQSLTFLDVSENIFSG-LSELP---PNLYYLNASSNEIRS 311
Query: 467 QNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLS 513
SL+ L++S N+L+ +P+ L L S+N+L+
Sbjct: 312 L----CDLPPSLEELNVSNNKLI-ELPALPPRLERL---IASFNHLA 350
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 5e-15
Identities = 59/313 (18%), Positives = 106/313 (33%), Gaps = 56/313 (17%)
Query: 11 LHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNISSNFVSIDLSFNQL 70
SL ++ N L + + L L + + + L+ L ++ + SI N L
Sbjct: 172 PPSLEFIAAGNNQLEELPE----LQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNIL 227
Query: 71 QGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNM--LNLSDNKLAIIQNMSSGCLKNSL 128
Q++ +L + N L+ +P ++ LN+ DN L + + SL
Sbjct: 228 --EELPELQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLPELPQ-----SL 279
Query: 129 ESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDL 188
L + N F+G + +L ++ L S N I LE +S N L +L
Sbjct: 280 TFLDVSENIFSG-LSEL--PPNLYYLNASSNE----IRSLCDLPPSLEELNVSNNKLIEL 332
Query: 189 -ANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSR------ 241
A +L L S NH +P LP N L++ N
Sbjct: 333 PALP---PRLERL-----------IASFNHLAE-VPELPQNLKQLHVEYNPLREFPDIPE 377
Query: 242 -------SISLCSI--SGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIP 292
+ L + L + + +N L + PD +S+ L + +
Sbjct: 378 SVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPDI---PESVEDLRMNSERVVDPYE 433
Query: 293 DSMGFLQNIQTQF 305
+ ++
Sbjct: 434 FAHETTDKLEDDV 446
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 8e-14
Identities = 45/262 (17%), Positives = 96/262 (36%), Gaps = 30/262 (11%)
Query: 11 LHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNISSNFVSIDLSFNQL 70
SL + N L + + L L T+ + + L+ L ++ + ++++ N L
Sbjct: 214 PLSLESIVAGNNILEELPE----LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYL 269
Query: 71 QGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNM--LNLSDNKLAIIQNMSSGCLKNSL 128
+P+ Q + +L+ +F+ L + N+ LN S N++ + ++ SL
Sbjct: 270 T-DLPELPQSLTFLDVSENIFSGL----SELPPNLYYLNASSNEIRSLCDLPP-----SL 319
Query: 129 ESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDL 188
E L++ N +P L ++RL S N L + + + +L + N L +
Sbjct: 320 EELNVSNNKLIE-LPAL--PPRLERLIASFNHLA-EVPELPQNLKQLH---VEYNPLREF 372
Query: 189 ANIQIKGKLPDLSSRFGTSNPGI------DISSNHFEGPIPPLPSNSSFLNLSKNRFSRS 242
+I + ++S + +N P +P + L ++ R
Sbjct: 373 PDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE-FPDIPESVEDLRMNSERVVDP 431
Query: 243 ISLCSISGSKLTYIDLSSNLLS 264
+ KL +
Sbjct: 432 YEFAHETTDKLEDDVFEHHHHH 453
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 3e-06
Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 11/94 (11%)
Query: 431 KSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVG 490
K +++ +N L +P+ L + N L P++ L L + N L
Sbjct: 156 KIIDVDNNSLK-KLPDL---PPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLK- 208
Query: 491 GIPSSLSPLSVLSVMDLSYNNLSGKIPTGTQLQS 524
+P L + N L ++P L
Sbjct: 209 KLPDLPLSLESI---VAGNNILE-ELPELQNLPF 238
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 22/115 (19%), Positives = 37/115 (32%), Gaps = 21/115 (18%)
Query: 425 STLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTG---------------QNS 469
++SL S N L +PE L L+ N + L+ +
Sbjct: 88 ELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKL 146
Query: 470 PKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTGTQLQS 524
P++ L +D+ N L +P L + N L ++P L
Sbjct: 147 PELQNSSFLKIIDVDNNSLK-KLPDLPPSLEFI---AAGNNQLE-ELPELQNLPF 196
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 2e-05
Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 7/96 (7%)
Query: 431 KSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVG 490
++ +N L +P+ + L ++ N L P++ L L + N L
Sbjct: 198 TAIYADNNSLK-KLPDL---PLSLESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK- 250
Query: 491 GIPSSLSPLSVLSVMDLSYNNLSGKIPTGTQLQSFN 526
+P L L+V D +L + T L
Sbjct: 251 TLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSE 286
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 7/91 (7%)
Query: 427 LGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRN 486
++S+ +N L E+ +L L + N L L++L+ D
Sbjct: 214 PLSLESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLT 270
Query: 487 QLVGGIPSSLSPLSVLSVMDLSYNNLSGKIP 517
L P L+ L V + ++ LS P
Sbjct: 271 DL----PELPQSLTFLDVSENIFSGLSELPP 297
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 8/96 (8%)
Query: 431 KSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVG 490
+ L +S+N+L +PE + + L +++ N L P SL+F+ NQL
Sbjct: 134 EYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLK--KLPD--LPPSLEFIAAGNNQLE- 186
Query: 491 GIPSSLSPLSVLSVMDLSYNNLSGKIPTGTQLQSFN 526
L L L+ + N+L L+S
Sbjct: 187 -ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIV 221
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 80.7 bits (199), Expect = 3e-16
Identities = 73/477 (15%), Positives = 156/477 (32%), Gaps = 40/477 (8%)
Query: 54 SNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNM-----LNL 108
++S +++S N + + L L + N ++ F L+L
Sbjct: 17 KDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDL 76
Query: 109 SDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKS 168
S NKL +S N L+ L L N F +P F +M +L
Sbjct: 77 SHNKL---VKISCHPTVN-LKHLDLSFNAFDA-LPICKEFGNMSQL-------------- 117
Query: 169 IGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSN 228
+ L T L ++S+ +A++ I L L +G + + E P+N
Sbjct: 118 --KFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN 175
Query: 229 SSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFS 288
F + +L + + + S LS S + L+ +++
Sbjct: 176 KEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN 235
Query: 289 GRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPF 348
+ + + + + + + ++ S+ F +
Sbjct: 236 -SFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSY 294
Query: 349 QLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQER-SSDPTIKVYYYTFVGPPYVHHYS 407
F+ + + + +++ C + + S++ + +
Sbjct: 295 IYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLI 354
Query: 408 FQD---KVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMD-LVGLVALNLSRNH 463
Q K + + +S + L++S N ++ + L++LN+S N
Sbjct: 355 LQMNQLKELSKIAEMTTQMKSL----QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI 410
Query: 464 LTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTGT 520
LT + + LDL N++ IP + L L ++++ N L +P G
Sbjct: 411 LTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGI 463
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 66.0 bits (161), Expect = 1e-11
Identities = 82/502 (16%), Positives = 144/502 (28%), Gaps = 111/502 (22%)
Query: 10 RLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNISSNFVSIDLSFNQ 69
L YL+L N L S +LK L DLSFN
Sbjct: 67 FNQELEYLDLSHNKLVKIS-----CHPTVNLKHL--------------------DLSFNA 101
Query: 70 LQGSIPDSS--QHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNS 127
++P +M L+ L L LE + LN+S L + +
Sbjct: 102 FD-ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH-LNISKVLLVLGETYGEKEDPEG 159
Query: 128 LESLHLEVNHFT----GPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQN 183
L+ + E H + S L + + + + F + L N
Sbjct: 160 LQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTN 219
Query: 184 SLT---DLANIQIKGKLPD--LSSRFGTSNPGIDISSNHFEGPIPPLPSNSSF------- 231
L NI+ L + T+ IS+ +G + + S
Sbjct: 220 PKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALS 279
Query: 232 -LNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFS-- 288
+ + F S S + + + + C + LD NN +
Sbjct: 280 IHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDT 339
Query: 289 -GRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTP 347
+ L+ + Q Q + + + ++ + Q + + N
Sbjct: 340 VFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLD--------ISQNSVSYDEK 391
Query: 348 FQLCQFAF-LQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHY 406
C + L L++S N ++ I +C
Sbjct: 392 KGDCSWTKSLLSLNMSSNILTDTIFRCL-------------------------------- 419
Query: 407 SFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTG 466
IK L+L SNK+ ++P++++ L L LN++ N L
Sbjct: 420 --------------------PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS 458
Query: 467 QNSPKIGQLKSLDFLDLSRNQL 488
+L SL + L N
Sbjct: 459 VPDGIFDRLTSLQKIWLHTNPW 480
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 57.6 bits (139), Expect = 6e-09
Identities = 51/294 (17%), Positives = 92/294 (31%), Gaps = 64/294 (21%)
Query: 5 LMRSLRLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNIS------- 57
+++ + ++ Y ++ L D+ SLK L+ H
Sbjct: 240 ILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIF 299
Query: 58 SNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQ 117
SN + + + + + HL N L + + G++
Sbjct: 300 SNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHL------------ 347
Query: 118 NMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEI 177
LE+L L++N + MK L+
Sbjct: 348 --------TELETLILQMNQLKELSKIAEMTTQMK---------------------SLQQ 378
Query: 178 TCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHF-EGPIPPLPSNSSFLNLSK 236
+SQNS++ L S +++SSN + LP L+L
Sbjct: 379 LDISQNSVSYDEKKGDCSWTKSLLS--------LNMSSNILTDTIFRCLPPRIKVLDLHS 430
Query: 237 NRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFD---SLVILDLGNNSF 287
N+ SI + L ++++SN L +PD FD SL + L N +
Sbjct: 431 NKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGI--FDRLTSLQKIWLHTNPW 480
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 4e-08
Identities = 38/196 (19%), Positives = 77/196 (39%), Gaps = 11/196 (5%)
Query: 2 RKLLMRSLRLHSLRYLNLEENNLANCSDW-FQVIGKLHSLK-TLTSHSCYLRPLSNISSN 59
R L +L + + + +++ ++ T++ + S
Sbjct: 266 RDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISP 325
Query: 60 FVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELE--GGIPKFFGNM-----LNLSDNK 112
F+ +D S N L ++ ++ H+ LE L L N+L+ I + M L++S N
Sbjct: 326 FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS 385
Query: 113 LAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQI 172
++ + SL SL++ N T I +K L L N + +I K + ++
Sbjct: 386 VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR-CLPPRIKVLDLHSNKIK-SIPKQVVKL 443
Query: 173 FKLEITCLSQNSLTDL 188
L+ ++ N L +
Sbjct: 444 EALQELNVASNQLKSV 459
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 1e-15
Identities = 50/260 (19%), Positives = 92/260 (35%), Gaps = 50/260 (19%)
Query: 54 SNISSNFVSIDLSFNQLQGSIPDSS-QHMVYLEHLSLMFNELEGGIPKFFGNM-----LN 107
++ + +DL N++ I D +++ L L L+ N++ P F + L
Sbjct: 48 KDLPPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106
Query: 108 LSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPD--LGGFSSMKRLYLSDNLLNGTI 165
LS N+L + K L+ L + N T + G + M + L N
Sbjct: 107 LSKNQLKELP---EKMPKT-LQELRVHENEITK-VRKSVFNGLNQMIVVELGTN------ 155
Query: 166 NKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPP- 224
L+ + + + + + I I+ + IP
Sbjct: 156 --------PLKSSGIENGAFQGMKKLSY-----------------IRIADTNITT-IPQG 189
Query: 225 LPSNSSFLNLSKNRFSRSISLCSISG-SKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLG 283
LP + + L+L N+ + + S+ G + L + LS N +S L L L
Sbjct: 190 LPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN 248
Query: 284 NNSFSGRIPDSMGFLQNIQT 303
NN ++P + + IQ
Sbjct: 249 NNKLV-KVPGGLADHKYIQV 267
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 7e-13
Identities = 54/289 (18%), Positives = 96/289 (33%), Gaps = 46/289 (15%)
Query: 10 RLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPL-SNISSNFVSIDLSFN 68
L +L L L N ++ S L L+ L L+ L + + + N
Sbjct: 74 NLKNLHTLILINNKISKISP--GAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHEN 131
Query: 69 QLQGSIPDSS-QHMVYLEHLSLMFNEL-EGGIPK-FFGNM-----LNLSDNKLAIIQNMS 120
++ + S + + + L N L GI F M + ++D + I
Sbjct: 132 EIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP--- 187
Query: 121 SGCLKNSLESLHLEVNHFTG-PIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITC 179
G + L LHL+ N T L G +++ +L LS N ++ N S+ L
Sbjct: 188 QGLPPS-LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH 246
Query: 180 LSQNSLTDLANIQIKGKLPDLSS-RFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNR 238
L+ N L ++ G L D + + + +N+ + N
Sbjct: 247 LNNNKLV-----KVPGGLADHKYIQV------VYLHNNNIS-------------AIGSND 282
Query: 239 FSRSISLCSISGSKLTYIDLSSNLLSGKL--PDCWWMFDSLVILDLGNN 285
F + + + L SN + P + + LGN
Sbjct: 283 FCPPGYNTKK--ASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 8e-06
Identities = 22/96 (22%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Query: 427 LGLIKSLELSSNKL-NGAVPEEI-MDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLS 484
L + +EL +N L + + + L + ++ ++T + G SL L L
Sbjct: 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLD 200
Query: 485 RNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTGT 520
N++ +SL L+ L+ + LS+N++S + G+
Sbjct: 201 GNKITKVDAASLKGLNNLAKLGLSFNSIS-AVDNGS 235
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 3e-05
Identities = 52/300 (17%), Positives = 92/300 (30%), Gaps = 77/300 (25%)
Query: 232 LNLSKNRFSRSISLCSISG-SKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGR 290
L L N+ S IS + + KL + LS N L +LP+ M +L L + N + +
Sbjct: 81 LILINNKIS-KISPGAFAPLVKLERLYLSKNQLK-ELPEK--MPKTLQELRVHENEIT-K 135
Query: 291 IPDSMGF--LQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEE-RFVRLKSNKFHGKTP 347
+ S+ F L + N + + F+ ++ ++R+ P
Sbjct: 136 VRKSV-FNGLNQMIVVELGT--NP----LKSSGIENGAFQGMKKLSYIRIADTNIT-TIP 187
Query: 348 FQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYS 407
L L L L N I+ V S
Sbjct: 188 QGL--PPSLTELHLDGNKIT----------------------------------KVDAAS 211
Query: 408 FQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQ 467
+ L + L LS N ++ + + L L+L+ N L +
Sbjct: 212 LKG----------------LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-K 254
Query: 468 NSPKIGQLKSLDFLDLSRNQL------VGGIPSSLSPLSVLSVMDLSYNNLS-GKIPTGT 520
+ K + + L N + P + + S + L N + +I T
Sbjct: 255 VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPST 314
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 4e-05
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Query: 425 STLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLS 484
L + +L L +NK++ P LV L L LS+N L K+L L +
Sbjct: 73 KNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK---ELPEKMPKTLQELRVH 129
Query: 485 RNQLVGGIPSSLSPLSVLSVMDLSYNNL-SGKIPTGT 520
N++ S + L+ + V++L N L S I G
Sbjct: 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 166
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 9e-05
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Query: 431 KSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVG 490
+ ++ S L VP+++ L+L N +T LK+L L L N++
Sbjct: 34 RVVQCSDLGLE-KVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 90
Query: 491 GIPSSLSPLSVLSVMDLSYNNLSGKIPTGT 520
P + +PL L + LS N L ++P
Sbjct: 91 ISPGAFAPLVKLERLYLSKNQLK-ELPEKM 119
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 35/186 (18%), Positives = 56/186 (30%), Gaps = 56/186 (30%)
Query: 337 LKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYT 396
L++NK L L L N IS P F
Sbjct: 59 LQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP-------------------- 98
Query: 397 FVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVA 456
L ++ L LS N+L +PE++ L
Sbjct: 99 ------------------------------LVKLERLYLSKNQLK-ELPEKM--PKTLQE 125
Query: 457 LNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQL-VGGIPS-SLSPLSVLSVMDLSYNNLSG 514
L + N +T L + ++L N L GI + + + LS + ++ N++
Sbjct: 126 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT- 184
Query: 515 KIPTGT 520
IP G
Sbjct: 185 TIPQGL 190
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 78.6 bits (194), Expect = 1e-15
Identities = 53/252 (21%), Positives = 90/252 (35%), Gaps = 22/252 (8%)
Query: 54 SNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNM-----LNL 108
I + +DL N+++ D +LE L L N + P F N+ L L
Sbjct: 28 EGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGL 87
Query: 109 SDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPD--LGGFSSMKRLYLSDNLLNGTIN 166
N+L +I L N L L + N + D ++K L + DN L +
Sbjct: 88 RSNRLKLIPLGVFTGLSN-LTKLDISENKIVI-LLDYMFQDLYNLKSLEVGDNDLVYISH 145
Query: 167 KSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLP 226
++ + LE L + +LT + + L L I F+
Sbjct: 146 RAFSGLNSLEQLTLEKCNLTSIPTEALSH-LHGLIVLRLRHLNINAIRDYSFKR-----L 199
Query: 227 SNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFD---SLVILDLG 283
L +S + +++ + G LT + ++ L+ +P + L L+L
Sbjct: 200 YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVP--YLAVRHLVYLRFLNLS 256
Query: 284 NNSFSGRIPDSM 295
N S I SM
Sbjct: 257 YNPIS-TIEGSM 267
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 77.8 bits (192), Expect = 2e-15
Identities = 56/293 (19%), Positives = 101/293 (34%), Gaps = 27/293 (9%)
Query: 10 RLHSLRYLNLEENNLAN-CSDWFQVIGKLHSLKTLTSHSCYLRPLSNIS----SNFVSID 64
L L L EN ++ F L +L+TL S L+ + SN +D
Sbjct: 54 SFPHLEELELNENIVSAVEPGAFN---NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110
Query: 65 LSFNQLQGSIPDSS-QHMVYLEHLSLMFNELEGGIPKFFGNM-----LNLSDNKLAIIQN 118
+S N++ + D Q + L+ L + N+L + F + L L L I
Sbjct: 111 ISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169
Query: 119 MSSGCLKNSLESLHLEVNHFTGPIPD--LGGFSSMKRLYLSDNLLNGTINKSIGQIFKLE 176
+ L L L L + I D +K L +S T+ + L
Sbjct: 170 EALSHLHG-LIVLRLRHLNINA-IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLT 227
Query: 177 ITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSK 236
++ +LT + + ++ L L + NP I + + L
Sbjct: 228 SLSITHCNLTAVPYLAVRH-LVYLRFLNLSYNPISTIEGSMLHE-----LLRLQEIQLVG 281
Query: 237 NRFSRSISLCSISG-SKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFS 288
+ + + G + L +++S N L+ + +L L L +N +
Sbjct: 282 GQL-AVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 64.4 bits (157), Expect = 4e-11
Identities = 60/309 (19%), Positives = 110/309 (35%), Gaps = 29/309 (9%)
Query: 222 IPP-LPSNSSFLNLSKNRFSRSISLCSISG-SKLTYIDLSSNLLSGKLPDCWWMFDSLVI 279
+P +P+ + L+L KNR +++ + L ++L+ N++S P + +L
Sbjct: 26 VPEGIPTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRT 84
Query: 280 LDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEE-RFVRLK 338
L L +N IP + F N+ + L F+ + + +
Sbjct: 85 LGLRSNRLK-LIPLGV-FTGLSNLTKLDISENKIVI------LLDYMFQDLYNLKSLEVG 136
Query: 339 SNKFHGKTPFQLCQFAF-----LQVLDLSLNNISGKIPKCFNNFTAMTQER-SSDPTIKV 392
N + AF L+ L L N++ + ++ + R +
Sbjct: 137 DNDLV-----YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191
Query: 393 YYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEE-IMDL 451
Y+F + Y L SL ++ L AVP + L
Sbjct: 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL---TSLSITHCNLT-AVPYLAVRHL 247
Query: 452 VGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNN 511
V L LNLS N ++ + +L L + L QL P + L+ L V+++S N
Sbjct: 248 VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307
Query: 512 LSGKIPTGT 520
L+ +
Sbjct: 308 LT-TLEESV 315
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 4e-05
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
Query: 431 KSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVG 490
+++ + AVPE I L+L +N + N + L+ L+L+ N +
Sbjct: 14 RAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA 70
Query: 491 GIPSSLSPLSVLSVMDLSYNNLSGKIPTGT 520
P + + L L + L N L IP G
Sbjct: 71 VEPGAFNNLFNLRTLGLRSNRLK-LIPLGV 99
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 1e-14
Identities = 49/313 (15%), Positives = 104/313 (33%), Gaps = 50/313 (15%)
Query: 9 LRLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNISSNFVSIDLSFN 68
+ L++ + + + + + ++ ++ L +L+
Sbjct: 42 ITLNNQKIVTFKNSTMRKLPAA--LLDSFRQVELL--------------------NLNDL 79
Query: 69 QLQGSIPDSS-QHMVYLEHLSLMFNELEGGIPKFFGNM-----LNLSDNKLAIIQNMSSG 122
Q++ I + + ++ L + FN + P F N+ L L N L+ +
Sbjct: 80 QIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFH 138
Query: 123 CLKNSLESLHLEVNHFTGPIPD--LGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCL 180
L +L + N+ I D +S++ L LS N L + + I L +
Sbjct: 139 NTPK-LTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLT-HV--DLSLIPSLFHANV 193
Query: 181 SQNSLTDLAN------IQIKG-KLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSS--F 231
S N L+ LA + + + + + N+ L +
Sbjct: 194 SYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLT-DTAWLLNYPGLVE 252
Query: 232 LNLSKNRFSRSISLCSISG-SKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGR 290
++LS N I +L + +S+N L L +L +LDL +N
Sbjct: 253 VDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-H 309
Query: 291 IPDSMGFLQNIQT 303
+ + ++
Sbjct: 310 VERNQPQFDRLEN 322
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 2e-13
Identities = 52/288 (18%), Positives = 88/288 (30%), Gaps = 37/288 (12%)
Query: 11 LHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNIS----SNFVSIDLS 66
H+++ L + N + V + L L L L ++ +S
Sbjct: 92 AHTIQKLYMGFNAIRYLPP--HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS 149
Query: 67 FNQLQGSIPDSS-QHMVYLEHLSLMFNELEGGIPKFFGNM--LNLSDNKLAIIQNMSSGC 123
N L+ I D + Q L++L L N L ++ N+S N L+ + +
Sbjct: 150 NNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIA-- 206
Query: 124 LKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQN 183
+E L N + + L L N L T + L LS N
Sbjct: 207 ----VEELDASHNSINV-VRG-PVNVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYN 258
Query: 184 SLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSS---FLNLSKNRFS 240
L + + L + IS+N + L+LS N
Sbjct: 259 ELEKIMYHPFVK-MQRLER--------LYISNNRLVA-LNLYGQPIPTLKVLDLSHNHL- 307
Query: 241 RSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFS 288
+ +L + L N + L +L L L +N +
Sbjct: 308 LHVERNQPQFDRLENLYLDHNSIV-TLKLS--THHTLKNLTLSHNDWD 352
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 2e-12
Identities = 70/484 (14%), Positives = 139/484 (28%), Gaps = 129/484 (26%)
Query: 73 SIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNM-----LNLSDNKLAIIQNMSSGCLKNS 127
I + Q+ + + + + + ++ + + +
Sbjct: 12 CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQ- 70
Query: 128 LESLHLEVNHFTGPIPD--LGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSL 185
+E L+L I ++++LY+ N + + L + L +N L
Sbjct: 71 VELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 129
Query: 186 TDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNS-------SFLNLSKNR 238
+ L I P L++ + +S+N+ + + ++ L LS NR
Sbjct: 130 SSLPR-GIFHNTPKLTT--------LSMSNNN----LERIEDDTFQATTSLQNLQLSSNR 176
Query: 239 FSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFL 298
+ + L I L + ++S NLLS L ++ LD +NS + +
Sbjct: 177 LT-HVDLSLIPS--LFHANVSYNLLS-TLAIPI----AVEELDASHNSIN-VVRG--PVN 225
Query: 299 QNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQV 358
+ ++L+ N + L
Sbjct: 226 VELTI-------------------------------LKLQHNNLTDTAWLL--NYPGLVE 252
Query: 359 LDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKG 418
+DLS N + + F + +
Sbjct: 253 VDLSYNELEKIMYHPFVKMQRLER------------------------------------ 276
Query: 419 SGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSL 478
L +S+N+L A+ + L L+LS NHL Q L
Sbjct: 277 --------------LYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRL 320
Query: 479 DFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTGTQLQSFNGSVYAGNPELCG 538
+ L L N +V S+ L L LS+N+ ++ + C
Sbjct: 321 ENLYLDHNSIVTLKLSTHHTLKNL---TLSHNDWDC-NSLRALFRNVARPAVDDADQHCK 376
Query: 539 LPLP 542
+
Sbjct: 377 IDYQ 380
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 73.4 bits (180), Expect = 6e-14
Identities = 82/490 (16%), Positives = 142/490 (28%), Gaps = 75/490 (15%)
Query: 54 SNISSNFVSIDLSFNQLQGSIPDSS-QHMVYLEHLSLMFNELEGGIPKFFGNM-----LN 107
++ ++ LS N + + + L L L N + F L+
Sbjct: 48 KDLPPRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106
Query: 108 LSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINK 167
+S N+L QN+S + + L L L N F +P F ++ +L
Sbjct: 107 VSHNRL---QNISCCPMAS-LRHLDLSFNDFDV-LPVCKEFGNLTKL------------- 148
Query: 168 SIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPS 227
L Q L +A++ + L DL S + +
Sbjct: 149 ---TFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP 205
Query: 228 NSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDL---GN 284
NS F + L +L+ I L+ + + +L++
Sbjct: 206 NSLFSVQVNMSVNALGHL------QLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHI 259
Query: 285 NSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHG 344
+ F ++ T I E T +K+ F
Sbjct: 260 ETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLF 319
Query: 345 KTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVH 404
FA + + LS+++ C + ++ T
Sbjct: 320 SKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTF------------------LNFT 361
Query: 405 HYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHL 464
F D V STL +++L L N L + + + +L L
Sbjct: 362 QNVFTDSVFQGC--------STLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSL 412
Query: 465 T----GQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTG- 519
+S+ L+LS N L G + L P + V+DL N + IP
Sbjct: 413 NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPK--VKVLDLHNNRIM-SIPKDV 469
Query: 520 ---TQLQSFN 526
LQ N
Sbjct: 470 THLQALQELN 479
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 60.7 bits (147), Expect = 7e-10
Identities = 67/389 (17%), Positives = 125/389 (32%), Gaps = 40/389 (10%)
Query: 10 RLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLR--PLSNIS----SNFVSI 63
L LR L L N + + V L+ L + L NIS ++ +
Sbjct: 74 FLSELRVLRLSHNRIRSLDF--HVFLFNQDLEYL-----DVSHNRLQNISCCPMASLRHL 126
Query: 64 DLSFNQLQGSIPDSS--QHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSS 121
DLSFN +P ++ L L L + + L+LS L ++
Sbjct: 127 DLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAH-LHLSCILLDLVSYHIK 184
Query: 122 GCLKNSLESLHLEVNHFTG------PIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKL 175
G SL+ + V H + +++ L LS+ LN + +
Sbjct: 185 GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSE 244
Query: 176 EITCLSQNSLT-DLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSS---- 230
+ ++T K + + ++I + I S
Sbjct: 245 LTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETAL 304
Query: 231 ----FLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNS 286
++ F S +++ LS + C S L+ N
Sbjct: 305 KSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNV 364
Query: 287 FSGRIPDSMGFLQNIQTQFTQQQFNR-RTVFIVWELLTTQTFESWEERFVRLKSNKFHGK 345
F+ + L+ +QT Q+ N + F V + + + + N +
Sbjct: 365 FTDSVFQGCSTLKRLQTLILQR--NGLKNFFKVALMTKNMS----SLETLDVSLNSLNSH 418
Query: 346 TPFQLCQFAF-LQVLDLSLNNISGKIPKC 373
+ C +A + VL+LS N ++G + +C
Sbjct: 419 AYDRTCAWAESILVLNLSSNMLTGSVFRC 447
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 1e-07
Identities = 39/296 (13%), Positives = 93/296 (31%), Gaps = 22/296 (7%)
Query: 13 SLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYL--RPLSNISSNFVSIDLSFNQL 70
L + L + N + + + +L +T + + F + + +
Sbjct: 224 QLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI 283
Query: 71 QGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLES 130
+ L + ++ + + +
Sbjct: 284 YNLTITERIDREEFTYSETALKSL---------MIEHVKNQVFLFSKEALYSVFAE-MNI 333
Query: 131 LHLEVNHFTG-PIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLA 189
L ++ + SS L + N+ ++ + + +L+ L +N L +
Sbjct: 334 KMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFF 393
Query: 190 NIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSIS 249
+ ++SS ++S+ ++ + LNLS N + S+ C
Sbjct: 394 KVA--LMTKNMSSLETLDVSLNSLNSHAYDRTC-AWAESILVLNLSSNMLTGSVFRC--L 448
Query: 250 GSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNN---SFSGRIPDSMGFLQNIQ 302
K+ +DL +N + +P +L L++ +N S + D + LQ I
Sbjct: 449 PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIW 503
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 7e-14
Identities = 54/259 (20%), Positives = 86/259 (33%), Gaps = 49/259 (18%)
Query: 54 SNISSNFVSIDLSFNQLQGSIPDSS-QHMVYLEHLSLMFNELEGGIPKFFGNM-----LN 107
IS + +DL N + + + + +L L L+ N++ K F + L
Sbjct: 50 KEISPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108
Query: 108 LSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPD--LGGFSSMKRLYLSDNLLNGTI 165
+S N L I + L L + N +P G +M + + N
Sbjct: 109 ISKNHLVEIP---PNLPSS-LVELRIHDNRIRK-VPKGVFSGLRNMNCIEMGGN------ 157
Query: 166 NKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPL 225
LE + + L KL L IS G L
Sbjct: 158 --------PLENSGFEPGAFDGL-------KLNYL-----------RISEAKLTGIPKDL 191
Query: 226 PSNSSFLNLSKNRFSRSISLCSISG-SKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGN 284
P + L+L N+ +I L + SKL + L N + +L L L N
Sbjct: 192 PETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDN 250
Query: 285 NSFSGRIPDSMGFLQNIQT 303
N S R+P + L+ +Q
Sbjct: 251 NKLS-RVPAGLPDLKLLQV 268
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 4e-12
Identities = 53/298 (17%), Positives = 100/298 (33%), Gaps = 65/298 (21%)
Query: 10 RLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPL-SNISSNFVSIDLSFN 68
L L L L N ++ + + L L+ L +L + N+ S+ V + + N
Sbjct: 76 GLQHLYALVLVNNKISKIHE--KAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDN 133
Query: 69 QLQGSIPDSS-QHMVYLEHLSLMFNELEGGI--PKFFGNM----LNLSDNKLAIIQNMSS 121
+++ +P + + + + N LE P F + L +S+ KL I
Sbjct: 134 RIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKD-- 190
Query: 122 GCLKNSLESLHLEVNHFTG-PIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCL 180
L +L LHL+ N + DL +S + RL L N +I +
Sbjct: 191 --LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN----------------QIRMI 232
Query: 181 SQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPP-LPSNSS--FLNLSKN 237
SL+ L ++ + + +N +P LP + L N
Sbjct: 233 ENGSLSFLPTLRE-----------------LHLDNNKLSR-VPAGLPDLKLLQVVYLHTN 274
Query: 238 RFSR------SISLCSISGSKLTYIDLSSNLLS-GKLPDCWWMFD---SLVILDLGNN 285
++ + + I L +N + ++ F + + GN
Sbjct: 275 NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPA--TFRCVTDRLAIQFGNY 330
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 7e-08
Identities = 50/289 (17%), Positives = 95/289 (32%), Gaps = 51/289 (17%)
Query: 232 LNLSKNRFSRSISLCSISG-SKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGR 290
L L N+ S I + S KL + +S N L ++P + SLV L + +N +
Sbjct: 83 LVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLV-EIPPN--LPSSLVELRIHDNRIR-K 137
Query: 291 IPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQL 350
+P + F + N + F+ + ++R+ K P L
Sbjct: 138 VPKGV-FSGLRNMNCIEMGGNP----LENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL 191
Query: 351 CQFAFLQVLDLSLNNISGKIPK-CFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQ 409
L L L N I I ++ + + I++ + + S
Sbjct: 192 --PETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRM----------IENGSLS 238
Query: 410 DKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTG--- 466
L ++ L L +NKL+ VP + DL L + L N++T
Sbjct: 239 F----------------LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGV 281
Query: 467 ---QNSPKIGQLKSLDFLDLSRNQL-VGGI-PSSLSPLSVLSVMDLSYN 510
+ + + L N + + P++ ++ +
Sbjct: 282 NDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 8e-06
Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 5/95 (5%)
Query: 427 LGLIKSLELSSNKL-NGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSR 485
L + +E+ N L N D + L L +S LT ++L+ L L
Sbjct: 146 LRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT---GIPKDLPETLNELHLDH 202
Query: 486 NQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTGT 520
N++ L S L + L +N + I G+
Sbjct: 203 NKIQAIELEDLLRYSKLYRLGLGHNQIR-MIENGS 236
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 1e-05
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 430 IKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLV 489
+ L L NK+ E+++ L L L N + + + L +L L L N+L
Sbjct: 195 LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS 254
Query: 490 GGIPSSLSPLSVLSVMDLSYNNLSGKIPTGT 520
+P+ L L +L V+ L NN++ K+
Sbjct: 255 R-VPAGLPDLKLLQVVYLHTNNIT-KVGVND 283
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 5e-05
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 430 IKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLV 489
L+L +N ++ ++ L L AL L N ++ + L+ L L +S+N LV
Sbjct: 56 TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV 115
Query: 490 ---GGIPSSLSPLSVLSVMDLSYNNLSGKIPTGT 520
+PSSL L + N + K+P G
Sbjct: 116 EIPPNLPSSLVEL------RIHDNRIR-KVPKGV 142
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 4/97 (4%)
Query: 425 STLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLS 484
L + +L L +NK++ + L L L +S+NHL SL L +
Sbjct: 75 KGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV---EIPPNLPSSLVELRIH 131
Query: 485 RNQLVGGIPSSLSPLSVLSVMDLSYNNL-SGKIPTGT 520
N++ S L ++ +++ N L + G
Sbjct: 132 DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGA 168
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Query: 431 KSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVG 490
+ ++ S L AVP+EI L+L N ++ L+ L L L N++
Sbjct: 36 RVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK 92
Query: 491 GIPSSLSPLSVLSVMDLSYNNLSGKIPTGT 520
+ SPL L + +S N+L +IP
Sbjct: 93 IHEKAFSPLRKLQKLYISKNHLV-EIPPNL 121
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 72.7 bits (178), Expect = 1e-13
Identities = 49/316 (15%), Positives = 104/316 (32%), Gaps = 50/316 (15%)
Query: 6 MRSLRLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNISSNFVSIDL 65
+ L++ + + + + + ++ ++ L +L
Sbjct: 45 FEDITLNNQKIVTFKNSTMRKLPAA--LLDSFRQVELL--------------------NL 82
Query: 66 SFNQLQGSIPDSS-QHMVYLEHLSLMFNELEGGIPKFFGNM-----LNLSDNKLAIIQNM 119
+ Q++ I + + ++ L + FN + P F N+ L L N L+ +
Sbjct: 83 NDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG 141
Query: 120 SSGCLKNSLESLHLEVNHFTGPIPD--LGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEI 177
L +L + N+ I D +S++ L LS N L + + I L
Sbjct: 142 IFHNTPK-LTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLT-HV--DLSLIPSLFH 196
Query: 178 TCLSQNSLTDLAN------IQIKG-KLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSS 230
+S N L+ LA + + + + + N+ L +
Sbjct: 197 ANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLT-DTAWLLNYPG 255
Query: 231 --FLNLSKNRFSRSISLCSISG-SKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSF 287
++LS N I +L + +S+N L L +L +LDL +N
Sbjct: 256 LVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHL 313
Query: 288 SGRIPDSMGFLQNIQT 303
+ + ++
Sbjct: 314 L-HVERNQPQFDRLEN 328
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 62.6 bits (152), Expect = 2e-10
Identities = 64/413 (15%), Positives = 125/413 (30%), Gaps = 91/413 (22%)
Query: 106 LNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTG-PIPDLGGFSSMKRLYLSDNLLNGT 164
+++ + L N + + + + P L F ++ L L+D +
Sbjct: 32 VHIDMQTQDVYFGFEDITLNN-QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI 90
Query: 165 INKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPP 224
+ ++ + N++ L + +P L+ + + N +P
Sbjct: 91 DTYAFAYAHTIQKLYMGFNAIRYLPP-HVFQNVPLLTV--------LVLERNDLSS-LPR 140
Query: 225 --LPSNSS--FLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVIL 280
+ L++S N R + + L + LSSN L+ + + SL
Sbjct: 141 GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDL--SLIPSLFHA 197
Query: 281 DLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSN 340
++ N S + + ++ + R V + EL ++L+ N
Sbjct: 198 NVSYNLLS-TLAIPI-AVEELDASHNSINVVRGPVNV--EL-----------TILKLQHN 242
Query: 341 KFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGP 400
+ L +DLS N + + F + +
Sbjct: 243 NLTDTAWLL--NYPGLVEVDLSYNELEKIMYHPFVKMQRLER------------------ 282
Query: 401 PYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLS 460
L +S+N+L A+ + L L+LS
Sbjct: 283 --------------------------------LYISNNRLV-ALNLYGQPIPTLKVLDLS 309
Query: 461 RNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLS 513
NHL Q L+ L L N +V S+ L L LS+N+
Sbjct: 310 HNHLLHV-ERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNL---TLSHNDWD 358
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 58.4 bits (141), Expect = 4e-09
Identities = 31/157 (19%), Positives = 59/157 (37%), Gaps = 17/157 (10%)
Query: 11 LHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLS-NISSNFVSIDLSFNQ 69
+ SL + N+ N L + +++ L + + + ++ + L N
Sbjct: 191 IPSLFHANVSYNLL-------STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNN 243
Query: 70 LQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNM-----LNLSDNKLAIIQNMSSGCL 124
L + + L + L +NELE + F M L +S+N+L +
Sbjct: 244 L--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPI- 300
Query: 125 KNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLL 161
+L+ L L NH + F ++ LYL N +
Sbjct: 301 -PTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSI 336
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 50.7 bits (121), Expect = 1e-06
Identities = 58/352 (16%), Positives = 109/352 (30%), Gaps = 66/352 (18%)
Query: 176 EITCLSQNSLTD--LANIQIKGKLPDLSSRFGTSNPG----IDISSNHFEGPIPPLPSNS 229
E C+ N D ++ I + D+ F + ++ L +
Sbjct: 15 EYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSF 74
Query: 230 S---FLNLSKNRFSRSISLCSISG-SKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNN 285
LNL+ + I + + + + + N + P + L +L L N
Sbjct: 75 RQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 133
Query: 286 SFSGRIPDSM-GFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHG 344
S +P + + T + + +N
Sbjct: 134 DLS-SLPRGIFHNTPKLTT-------------------------------LSMSNNNLER 161
Query: 345 KTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVH 404
LQ L LS N ++ + + ++ S + T P V
Sbjct: 162 IEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS----TLAIPIAVE 214
Query: 405 HYSFQD---KVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSR 461
V+ + L+L N L +++ GLV ++LS
Sbjct: 215 ELDASHNSINVVR---------GPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSY 263
Query: 462 NHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLS 513
N L +++ L+ L +S N+LV + P+ L V+DLS+N+L
Sbjct: 264 NELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL 314
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 1e-06
Identities = 17/95 (17%), Positives = 37/95 (38%), Gaps = 1/95 (1%)
Query: 426 TLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSR 485
TL K + ++ + + + LNL+ + ++ ++ L +
Sbjct: 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 108
Query: 486 NQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTGT 520
N + P + +L+V+ L N+LS +P G
Sbjct: 109 NAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGI 142
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 9e-06
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 6/97 (6%)
Query: 431 KSLELSSNKLNGAVPEEI-MDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLV 489
L L N L+ ++P I + L L++S N+L SL L LS N+L
Sbjct: 126 TVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 184
Query: 490 GGIPSSLSPLSVLSVMDLSYNNLSGKIPTGTQLQSFN 526
S + L ++SYN LS + ++ +
Sbjct: 185 HVDLSLIPSLFHA---NVSYNLLS-TLAIPIAVEELD 217
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 1/96 (1%)
Query: 425 STLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLS 484
+ ++ L L+ ++ + L + N + + L L L
Sbjct: 72 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 131
Query: 485 RNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTGT 520
RN L L+ + +S NNL +I T
Sbjct: 132 RNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDT 166
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 2e-04
Identities = 7/96 (7%), Positives = 31/96 (32%), Gaps = 1/96 (1%)
Query: 425 STLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLS 484
+ + + + E + L + + + + + + ++ L+L+
Sbjct: 24 QYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN 83
Query: 485 RNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTGT 520
Q+ + + + + + +N + +P
Sbjct: 84 DLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHV 118
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 70.7 bits (174), Expect = 1e-13
Identities = 49/314 (15%), Positives = 89/314 (28%), Gaps = 62/314 (19%)
Query: 13 SLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNI-----SSNFVSIDLSF 67
L N N ++ + T L+ +++ V+++L
Sbjct: 31 VLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRS 90
Query: 68 NQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNM-----LNLSDNKLAIIQNMSSG 122
L PD + + +L+H+++ L +P L L+ N L + S
Sbjct: 91 VPLP-QFPDQAFRLSHLQHMTIDAAGLME-LPDTMQQFAGLETLTLARNPLRALPA-SIA 147
Query: 123 CLKNSLESLHLEVNHFTGPIPD----------LGGFSSMKRLYLSDNLLNGTINKSIGQI 172
L L L + +P+ G +++ L L + ++ SI +
Sbjct: 148 SLNR-LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANL 205
Query: 173 FKLEITCLSQNSLTDL-ANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSF 231
L+ + + L+ L I LP L
Sbjct: 206 QNLKSLKIRNSPLSALGPAI---HHLPKLEE----------------------------- 233
Query: 232 LNLSKNRFSRSI--SLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSG 289
L+L R+ + L + L LP L LDL
Sbjct: 234 LDLRGCTALRNYPPIFGGRA--PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291
Query: 290 RIPDSMGFLQNIQT 303
R+P + L
Sbjct: 292 RLPSLIAQLPANCI 305
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 6e-10
Identities = 32/204 (15%), Positives = 67/204 (32%), Gaps = 37/204 (18%)
Query: 10 RLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSC-----------YLRPLSNIS- 57
+ L L L N L I L+ L+ L+ +C
Sbjct: 125 QFAGLETLTLARNPLRALPAS---IASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181
Query: 58 -SNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNM-----LNLSDN 111
N S+ L + ++ S+P S ++ L+ L + + L + ++ L+L
Sbjct: 182 LVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGC 239
Query: 112 KL-----AIIQNMSSGCLKNSLESLHL-EVNHFTGPIPD-LGGFSSMKRLYLSDNLLNGT 164
I + L+ L L + ++ +P + + +++L L +
Sbjct: 240 TALRNYPPIFGGRA------PLKRLILKDCSNLLT-LPLDIHRLTQLEKLDLRGCVNLSR 292
Query: 165 INKSIGQIFKLEITCLSQNSLTDL 188
+ I Q+ I + + L
Sbjct: 293 LPSLIAQLPANCIILVPPHLQAQL 316
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 2e-07
Identities = 31/168 (18%), Positives = 51/168 (30%), Gaps = 35/168 (20%)
Query: 3 KLLMRSLRLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNISSNFVS 62
L +L+ L LE + + I L +LK+L
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGIRSLPAS---IANLQNLKSL------------------- 211
Query: 63 IDLSFNQLQGSIPDSSQHMVYLEHLSLM-FNELEGGIPKFFGNM-----LNLSD-NKLAI 115
+ + L ++ + H+ LE L L L P FG L L D + L
Sbjct: 212 -KIRNSPLS-ALGPAIHHLPKLEELDLRGCTALR-NYPPIFGGRAPLKRLILKDCSNLLT 268
Query: 116 IQNMSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNLLN 162
+ L LE L L +P + + + + +L
Sbjct: 269 LPL-DIHRLTQ-LEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 2e-07
Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 6/93 (6%)
Query: 425 STLGLIKSLELSSNKLNG--AVPEEIMDL--VGLVALNLSRNHLTGQNSPKIGQLKSLDF 480
+ ++ + A + + D G VAL L L Q + +L L
Sbjct: 50 WRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQH 108
Query: 481 LDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLS 513
+ + L+ +P ++ + L + L+ N L
Sbjct: 109 MTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR 140
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 3e-07
Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 431 KSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLS-RNQLV 489
KSL++ ++ L+ A+ I L L L+L P G L L L + L+
Sbjct: 209 KSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267
Query: 490 GGIPSSLSPLSVLSVMDLSYNNLSGKIP 517
+P + L+ L +DL ++P
Sbjct: 268 -TLPLDIHRLTQLEKLDLRGCVNLSRLP 294
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 6e-07
Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 11/96 (11%)
Query: 431 KSLELSSNKLNGAVPEEI---------MDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFL 481
+ L + + +PE + LV L +L L + I L++L L
Sbjct: 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSL 211
Query: 482 DLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIP 517
+ + L + ++ L L +DL P
Sbjct: 212 KIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYP 246
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 2e-06
Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 11/92 (11%)
Query: 431 KSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVG 490
+ + + + L +P+ + GL L L+RN L I L L L + +
Sbjct: 107 QHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELT 164
Query: 491 GIPSSLSPLSV---------LSVMDLSYNNLS 513
+P L+ L + L + +
Sbjct: 165 ELPEPLASTDASGEHQGLVNLQSLRLEWTGIR 196
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 1e-05
Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 5/89 (5%)
Query: 431 KSLELSSNKLNGAVPEEIMDLVGLVALNLS-RNHLTGQNSPK-IGQLKSLDFLDLSRNQL 488
+ L+L P L L L ++L P I +L L+ LDL
Sbjct: 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL--TLPLDIHRLTQLEKLDLRGCVN 289
Query: 489 VGGIPSSLSPLSVLSVMDLSYNNLSGKIP 517
+ +PS ++ L ++ + +L ++
Sbjct: 290 LSRLPSLIAQLPANCIILVP-PHLQAQLD 317
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 4e-05
Identities = 33/207 (15%), Positives = 61/207 (29%), Gaps = 70/207 (33%)
Query: 347 PFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHY 406
P Q + + LQ + + + ++P F
Sbjct: 97 PDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAG--------------------------- 128
Query: 407 SFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSR-NHLT 465
+++L L+ N L A+P I L L L++ LT
Sbjct: 129 -----------------------LETLTLARNPLR-ALPASIASLNRLRELSIRACPELT 164
Query: 466 --------GQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIP 517
S + L +L L L + +P+S++ L L + + + LS +
Sbjct: 165 ELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALG 222
Query: 518 TG----TQLQSFNGSVYAGNPELCGLP 540
+L+ + G L P
Sbjct: 223 PAIHHLPKLEELDLR---GCTALRNYP 246
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 2e-13
Identities = 46/288 (15%), Positives = 100/288 (34%), Gaps = 32/288 (11%)
Query: 11 LHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNIS--SNFVSIDLSFN 68
L + L+ + + L++L L + L+ + + ++LS N
Sbjct: 40 LDGITTLSAFGTGVTTIEG----VQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGN 95
Query: 69 QLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFG----NMLNLSDNKLAIIQNMSSGCL 124
L + + ++ L L ++ + G +L L N++ I ++ L
Sbjct: 96 PL--KNVSAIAGLQSIKTLDLTSTQITD-VTPLAGLSNLQVLYLDLNQITNISPLAG--L 150
Query: 125 KNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNS 184
N L+ L + + + L S + L DN + + + + L L N
Sbjct: 151 TN-LQYLSIGNAQVSD-LTPLANLSKLTTLKADDNKI--SDISPLASLPNLIEVHLKNNQ 206
Query: 185 LTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSIS 244
++D++ + +L + +++ +N N+ K I+
Sbjct: 207 ISDVSPL---ANTSNLFI--------VTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIA 255
Query: 245 LCSIS-GSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRI 291
+IS +L+ NL S + + + F+ V FSG +
Sbjct: 256 PATISDNGTYASPNLTWNLTSF-INNVSYTFNQSVTFKNTTVPFSGTV 302
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 2e-05
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 425 STLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLS 484
+ L IK+L+L+S ++ + L L L L N +T N + L +L +L +
Sbjct: 104 AGLQSIKTLDLTSTQITD--VTPLAGLSNLQVLYLDLNQIT--NISPLAGLTNLQYLSIG 159
Query: 485 RNQLVGGIPSSLSPLSVLSVMDLSYNNLS 513
Q+ + L+ LS L+ + N +S
Sbjct: 160 NAQVSD--LTPLANLSKLTTLKADDNKIS 186
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 4e-04
Identities = 28/164 (17%), Positives = 56/164 (34%), Gaps = 27/164 (16%)
Query: 127 SLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLT 186
+ + ++ T + + L + T + + + L L N +T
Sbjct: 20 NAIKIAAGKSNVTDTVT-QADLDGITTLSAFGTGV--TTIEGVQYLNNLIGLELKDNQIT 76
Query: 187 DLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLC 246
DLA + L ++ + NP ++S I L + L+L+ + + L
Sbjct: 77 DLAPL---KNLTKITELELSGNPLKNVS------AIAGLQ-SIKTLDLTSTQITDVTPLA 126
Query: 247 SISGSKLTYIDLSSNLLS-----GKLPDCWWMFDSLVILDLGNN 285
+ S L + L N ++ L +L L +GN
Sbjct: 127 GL--SNLQVLYLDLNQITNISPLAGLT-------NLQYLSIGNA 161
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 6e-04
Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Query: 430 IKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLV 489
+ + + V + DL G+ L+ +T + L +L L+L NQ+
Sbjct: 21 AIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT--TIEGVQYLNNLIGLELKDNQIT 76
Query: 490 GGIPSSLSPLSVLSVMDLSYNNLS 513
+ L L+ ++ ++LS N L
Sbjct: 77 D--LAPLKNLTKITELELSGNPLK 98
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 69.0 bits (169), Expect = 1e-12
Identities = 79/476 (16%), Positives = 135/476 (28%), Gaps = 113/476 (23%)
Query: 55 NISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPK--FFG----NMLNL 108
+ ++ +DLS N + S + L+ L + I F G +L L
Sbjct: 27 ELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86
Query: 109 SDNKLAIIQNMSSGCLKN--SLESLHLEVNHFTGPIPDLGGF---SSMKRLYLSDNLLNG 163
N+ + +G +LE L L + G + F +S++ L L DN +
Sbjct: 87 DYNQF---LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI-- 141
Query: 164 TINKSI--GQIF----KLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNH 217
K I F + + L+ N + + L + + T + +SS
Sbjct: 142 ---KKIQPASFFLNMRRFHVLDLTFNKVKSICE----EDLLNFQGKHFTL---LRLSSIT 191
Query: 218 FEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSL 277
++++ + +T +DLS N + FD++
Sbjct: 192 -------------LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAK--RFFDAI 236
Query: 278 VILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRL 337
+ + S F F L + + L
Sbjct: 237 AGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF--------KGLEASGV------KTCDL 282
Query: 338 KSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTF 397
+K F L+ L L+ N I+ F T +
Sbjct: 283 SKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLL---------------- 326
Query: 398 VGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMD-LVGLVA 456
L LS N L G++ + + L L
Sbjct: 327 ----------------------------------KLNLSQNFL-GSIDSRMFENLDKLEV 351
Query: 457 LNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNL 512
L+LS NH+ L +L L L NQL L+ L + L N
Sbjct: 352 LDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 9e-11
Identities = 70/421 (16%), Positives = 129/421 (30%), Gaps = 95/421 (22%)
Query: 106 LNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPD--LGGFSSMKRLYLSDNLLNG 163
++LS N +A + S L++ L+ L +E I + G SS+ L L N
Sbjct: 35 VDLSLNSIAELNETSFSRLQD-LQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN---- 89
Query: 164 TINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIP 223
+ L + LAN+++ + ++ + +G +
Sbjct: 90 ------------QFLQLETGAFNGLANLEV-----------------LTLTQCNLDGAVL 120
Query: 224 PLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFD---SLVIL 280
+ F L+ L + L N + P F +L
Sbjct: 121 S---GNFFKPLTS----------------LEMLVLRDNNIKKIQPAS--FFLNMRRFHVL 159
Query: 281 DLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSN 340
DL N I + + ++ +
Sbjct: 160 DLTFNKVK-SICEE--------------------DLLNFQGKHFTLLRLSSITLQDMNEY 198
Query: 341 KFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGP 400
+ + + LDLS N + K F + A T+ +S + + G
Sbjct: 199 WLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH 258
Query: 401 PYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMD-LVGLVALNL 459
+ G E K+ +LS +K+ A+ + + L L L
Sbjct: 259 TNFKD-------PDNFTFKGLEASGV----KTCDLSKSKIF-ALLKSVFSHFTDLEQLTL 306
Query: 460 SRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTG 519
++N + + L L L+LS+N L L L V+DLSYN++ +
Sbjct: 307 AQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA-LGDQ 365
Query: 520 T 520
+
Sbjct: 366 S 366
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 62.1 bits (151), Expect = 2e-10
Identities = 49/292 (16%), Positives = 86/292 (29%), Gaps = 44/292 (15%)
Query: 10 RLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNISSNFVSIDLSFNQ 69
RL L++L +E+ L SL L L +NQ
Sbjct: 52 RLQDLQFLKVEQQTPG-LVIRNNTFRGLSSLIIL--------------------KLDYNQ 90
Query: 70 LQGSIPDSS-QHMVYLEHLSLMFNELEGGI--PKFFGNM-----LNLSDNKLAIIQNMSS 121
+ + + LE L+L L+G + FF + L L DN + IQ S
Sbjct: 91 FL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149
Query: 122 GCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLS 181
L L N I + + + + + L+ + + + + C +
Sbjct: 150 FLNMRRFHVLDLTFNKVKS-ICE-EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGN 207
Query: 182 QNSLT-----DLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSK 236
T DL+ K + + ++ +F +
Sbjct: 208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT-NFKDPDN 266
Query: 237 NRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFS 288
F + S + DLS + + L + F L L L N +
Sbjct: 267 FTFKG------LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN 312
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 5e-09
Identities = 54/298 (18%), Positives = 91/298 (30%), Gaps = 63/298 (21%)
Query: 10 RLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNISSNFVSIDLSFNQ 69
L SL L L+ N L +L+ L L+
Sbjct: 77 GLSSLIILKLDYNQFLQLET--GAFNGLANLEVL--------------------TLTQCN 114
Query: 70 LQGS-IPDSS-QHMVYLEHLSLMFNELEGGIPK-FFGNM-----LNLSDNKLAIIQNMS- 120
L G+ + + + + LE L L N ++ P FF NM L+L+ NK+ I
Sbjct: 115 LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDL 174
Query: 121 SGCLKNSLESLHLEVNHFT---------GPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQ 171
L L + +S+ L LS N ++ +
Sbjct: 175 LNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMA---KR 231
Query: 172 IFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSF 231
F ++ + L D + F+G S
Sbjct: 232 FFDA----IAGTKIQSLILSNSYNMGSSFG-----HTNFKDPDNFTFKGLE---ASGVKT 279
Query: 232 LNLSKNRFSRSISLCSISG-SKLTYIDLSSNLLSGKLPDCWWMFDSLV---ILDLGNN 285
+LSK++ ++ S + L + L+ N ++ K+ D F L L+L N
Sbjct: 280 CDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDN--AFWGLTHLLKLNLSQN 333
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 5e-05
Identities = 62/316 (19%), Positives = 95/316 (30%), Gaps = 64/316 (20%)
Query: 10 RLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNISSNFVSIDLSFNQ 69
L SL L L +NN+ Q +++ +DL+FN+
Sbjct: 127 PLTSLEMLVLRDNNIKK----IQPASFFLNMRRFH-----------------VLDLTFNK 165
Query: 70 LQGSIPDS---SQHMVYLEHLSLMFNELE---------GGIPKFFGNM----LNLSDNKL 113
++ SI + + + L L L+ F N L+LS N
Sbjct: 166 VK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGF 224
Query: 114 AIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIF 173
+ L +++ F + G
Sbjct: 225 KESMAKRFFDAIAGTKIQSLILSNSYNMG---SSFGHTNFKDPDNFTFKGLEASG----- 276
Query: 174 KLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLN 233
++ LS++ + L + DL N I N F G ++ LN
Sbjct: 277 -VKTCDLSKSKIFALLK-SVFSHFTDLEQLTLAQNEINKIDDNAFWG-----LTHLLKLN 329
Query: 234 LSKNRFSRSISLCSISG-SKLTYIDLSSNLLSGKLPDCWWMFD---SLVILDLGNN---S 286
LS+N SI KL +DLS N + L D F +L L L N S
Sbjct: 330 LSQNFLG-SIDSRMFENLDKLEVLDLSYNHIRA-LGDQ--SFLGLPNLKELALDTNQLKS 385
Query: 287 FSGRIPDSMGFLQNIQ 302
I D + LQ I
Sbjct: 386 VPDGIFDRLTSLQKIW 401
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 1e-12
Identities = 58/253 (22%), Positives = 94/253 (37%), Gaps = 33/253 (13%)
Query: 54 SNISSNFVSIDLSFNQLQGSIPDSS-QHMVYLEHLSLMFNELEG---GIPKFFG----NM 105
+ I S+ ++L N+LQ S+P + L LSL N L FG
Sbjct: 24 TGIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKY 82
Query: 106 LNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSM---KRLYLSDNLLN 162
L+LS N + + + G LE L + ++ + + F S+ L +S
Sbjct: 83 LDLSFNGVITMSSNFLGL--EQLEHLDFQHSNLKQ-MSEFSVFLSLRNLIYLDISHTHTR 139
Query: 163 GTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPI 222
N + LE+ ++ NS + I +L +L+ +D+S E +
Sbjct: 140 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF--------LDLSQCQLEQ-L 190
Query: 223 PPLPSNS----SFLNLSKNRFSRSISLCSISG-SKLTYIDLSSNLLSGKLPDCWW--MFD 275
P NS LN+S N F S+ + L +D S N +
Sbjct: 191 SPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPS 248
Query: 276 SLVILDLGNNSFS 288
SL L+L N F+
Sbjct: 249 SLAFLNLTQNDFA 261
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 5e-12
Identities = 55/245 (22%), Positives = 87/245 (35%), Gaps = 47/245 (19%)
Query: 10 RLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNISSNFVSIDLSFNQ 69
+L L L+L N L+ Q SLK L DLSFN
Sbjct: 50 KLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYL--------------------DLSFNG 89
Query: 70 LQGSIPDSSQHMVYLEHLSLMFNELEGGIPK-FFGNM-----LNLSDNKLAIIQNMSSGC 123
+ ++ + + LEHL + L+ F ++ L++S + N G
Sbjct: 90 VI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN---GI 145
Query: 124 LKN--SLESLHLEVNHFTGPIPD--LGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITC 179
SLE L + N F ++ L LS L + + L++
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205
Query: 180 LSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHF----EGPIPPLPSNSSFLNLS 235
+S N+ L K L L +D S NH + + PS+ +FLNL+
Sbjct: 206 MSHNNFFSLDTFPYKC-LNSLQV--------LDYSLNHIMTSKKQELQHFPSSLAFLNLT 256
Query: 236 KNRFS 240
+N F+
Sbjct: 257 QNDFA 261
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 6e-07
Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 2/95 (2%)
Query: 427 LGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKI-GQLKSLDFLDLSR 485
+K L+LS N + + + L L L+ ++L + + L++L +LD+S
Sbjct: 77 TTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 135
Query: 486 NQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTGT 520
+ LS L V+ ++ N+
Sbjct: 136 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 170
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 1e-06
Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 2/95 (2%)
Query: 427 LGLIKSLELSSNKLNGAVPEEI-MDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSR 485
L ++ L+++ N +I +L L L+LS+ L + L SL L++S
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
Query: 486 NQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTGT 520
N L+ L V+D S N++
Sbjct: 209 NNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQE 242
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 1e-06
Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 3/93 (3%)
Query: 430 IKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQ--NSPKIGQLKSLDFLDLSRNQ 487
LEL SNKL L L L+LS N L+ + S SL +LDLS N
Sbjct: 30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89
Query: 488 LVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTGT 520
++ + S+ L L +D ++NL
Sbjct: 90 VI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 121
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 8e-05
Identities = 23/85 (27%), Positives = 31/85 (36%), Gaps = 5/85 (5%)
Query: 431 KSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQL-- 488
+ +S L +VP I L L N L +L L L LS N L
Sbjct: 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66
Query: 489 VGGIPSSLSPLSVLSVMDLSYNNLS 513
G S + L +DLS+N +
Sbjct: 67 KGCCSQSDFGTTSLKYLDLSFNGVI 91
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 68.5 bits (167), Expect = 2e-12
Identities = 40/190 (21%), Positives = 80/190 (42%), Gaps = 25/190 (13%)
Query: 5 LMRSLRLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNISSNFVSID 64
L++ ++ L L NL++ D + + L L L + ++ +D
Sbjct: 52 LLKECLINQFSELQLNRLNLSSLPDN---LPP--QITVLEITQNALISLPELPASLEYLD 106
Query: 65 LSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGN--MLNLSDNKLAIIQNMSSG 122
N+L ++P+ L+HL + N+L +P+ +N +N+L ++ + +
Sbjct: 107 ACDNRLS-TLPEL---PASLKHLDVDNNQLT-MLPELPALLEYINADNNQLTMLPELPT- 160
Query: 123 CLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITC--- 179
SLE L + N T +P+L S++ L +S NLL ++ + E T
Sbjct: 161 ----SLEVLSVRNNQLTF-LPEL--PESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFF 212
Query: 180 -LSQNSLTDL 188
+N +T +
Sbjct: 213 RCRENRITHI 222
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 67.3 bits (164), Expect = 5e-12
Identities = 67/456 (14%), Positives = 134/456 (29%), Gaps = 95/456 (20%)
Query: 50 LRPLSNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLS 109
+ P++N S +S + +N + G+ D E +L
Sbjct: 4 MLPINNNFS--LSQNSFYNTISGTYADYFSAWDKWEKQALPGENRN-------------- 47
Query: 110 DNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSI 169
+++++ CL N L L + + +PD + L ++ N L ++ +
Sbjct: 48 -EAVSLLKE----CLINQFSELQLNRLNLSS-LPD-NLPPQITVLEITQNAL-ISLPELP 99
Query: 170 GQIFKLEITCLSQNSLTDL-ANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSN 228
+ L+ N L+ L L L D+ +N +P LP+
Sbjct: 100 ASLEYLD---ACDNRLSTLPELP---ASLKHL-----------DVDNNQLTM-LPELPAL 141
Query: 229 SSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFS 288
++N N+ + L + L + + +N L+ LP+ +SL LD+ N
Sbjct: 142 LEYINADNNQLTMLPELPT----SLEVLSVRNNQLT-FLPEL---PESLEALDVSTNLLE 193
Query: 289 GRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPF 348
+P + + F R + N+ P
Sbjct: 194 -SLPAVPVRNHHSEETEI---------------------------FFRCRENRIT-HIPE 224
Query: 349 QLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSF 408
+ + L N +S +I + + TA + +
Sbjct: 225 NILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAV 284
Query: 409 --------QDKVMPTWKGSGREYRST--LGLIKSLELSSNKLNGA-----VPEEIMDLVG 453
Q V W E + + L + + N + V + L
Sbjct: 285 TAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSA 344
Query: 454 LVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLV 489
L + + +L + +L + LV
Sbjct: 345 SAELRQQSFAVAADATESCEDRVALTWNNLRKTLLV 380
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 51.1 bits (122), Expect = 6e-07
Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 10/98 (10%)
Query: 431 KSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSL----DFLDLSRN 486
+ L + +N+L +PE L AL++S N L + F N
Sbjct: 163 EVLSVRNNQLT-FLPEL---PESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCREN 217
Query: 487 QLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTGTQLQS 524
++ IP ++ L + L N LS +I Q+
Sbjct: 218 RITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 47.3 bits (112), Expect = 1e-05
Identities = 24/119 (20%), Positives = 38/119 (31%), Gaps = 15/119 (12%)
Query: 425 STLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLS 484
+K L++ +N+L +PE L +N N LT L+ L +
Sbjct: 117 ELPASLKHLDVDNNQLT-MLPELPA---LLEYINADNNQLT-MLPELPTSLEVLS---VR 168
Query: 485 RNQLVGGIPSSLSPLSVLSVMDLSYNNLSG---KIPTGTQLQSFNGSVYAGNPELCGLP 540
NQL +P L L D+S N L + + +P
Sbjct: 169 NNQL-TFLPELPESLEAL---DVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIP 223
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 2e-05
Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 11/84 (13%)
Query: 430 IKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLV 489
L+L+ L+ ++P+ + + L +++N L L+ LD N+L
Sbjct: 61 FSELQLNRLNLS-SLPDNL--PPQITVLEITQNALI-SLPELPASLEYLD---ACDNRLS 113
Query: 490 GGIPSSLSPLSVLSVMDLSYNNLS 513
+P + L L D+ N L+
Sbjct: 114 -TLPELPASLKHL---DVDNNQLT 133
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 8e-05
Identities = 17/93 (18%), Positives = 30/93 (32%), Gaps = 6/93 (6%)
Query: 425 STLGLIKSLELSSNKLNGAVPEEIMDLVGL----VALNLSRNHLTGQNSPKIGQLKSLDF 480
+++L++S+N L ++P + + N +T I L
Sbjct: 177 ELPESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCT 234
Query: 481 LDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLS 513
+ L N L I SLS + S
Sbjct: 235 IILEDNPLSSRIRESLSQQTAQPDYHGPRIYFS 267
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 2e-04
Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 10/86 (11%)
Query: 432 SLELSSNKLNGAVPEEIM----DLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQ 487
S N ++ + +RN + K + L L+R
Sbjct: 14 SQNSFYNTIS-GTYADYFSAWDKWEKQALPGENRNEAV--SLLKECLINQFSELQLNRLN 70
Query: 488 LVGGIPSSLSPLSVLSVMDLSYNNLS 513
L +P +L P ++V++++ N L
Sbjct: 71 LS-SLPDNLPPQ--ITVLEITQNALI 93
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 5e-04
Identities = 29/184 (15%), Positives = 60/184 (32%), Gaps = 28/184 (15%)
Query: 13 SLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNISSNFVSIDLSFNQLQG 72
L Y+N + N L + SL+ L+ + L L + + ++D+S N L+
Sbjct: 141 LLEYINADNNQLTMLPE------LPTSLEVLSVRNNQLTFLPELPESLEALDVSTNLLE- 193
Query: 73 SIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLH 132
S+P + E + +N++ I + L ++
Sbjct: 194 SLPAVPVRNHHSEETEI---------------FFRCRENRITHIPE-NILSLDP-TCTII 236
Query: 133 LEVNHFTG-PIPDLGGFSSMKRLYLSDNLLN---GTINKSIGQIFKLEITCLSQNSLTDL 188
LE N + L ++ + + G N + +N +D+
Sbjct: 237 LEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDV 296
Query: 189 ANIQ 192
+ I
Sbjct: 297 SQIW 300
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 66.8 bits (163), Expect = 3e-12
Identities = 57/308 (18%), Positives = 95/308 (30%), Gaps = 44/308 (14%)
Query: 13 SLRYLNLEENNLANC--SDWFQVIGKLHSLKTLTSHSCYLRPLSNISSNFVSIDLSFNQL 70
+ + ++ NC + ++ G SL+ L L + S+ L +
Sbjct: 16 NFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTV 75
Query: 71 QG-SIPDSSQH-------MVYLEHLSLMFNELEGGIPKFFGNM-------LNLSDNKLAI 115
+ IP + L+ L+L E+ G P LNL + A
Sbjct: 76 RAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT 135
Query: 116 IQN---MSSGCLKNSLESLHLEVNHFTG-PIPDLGGFSSMKRLYLSDNLLNGTINKSI-- 169
LK L+ L + H + F ++ L LSDN G
Sbjct: 136 RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195
Query: 170 --GQIFKLEITCLSQNSLTDLANI--QIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPL 225
+ L++ L + + + + L +D+S N
Sbjct: 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQG--------LDLSHNSLRDAAGAP 247
Query: 226 ----PSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILD 281
PS + LNLS + +KL+ +DLS N L P + + L
Sbjct: 248 SCDWPSQLNSLNLSFTGLK-QVPKGL--PAKLSVLDLSYNRLDR-NPSPDEL-PQVGNLS 302
Query: 282 LGNNSFSG 289
L N F
Sbjct: 303 LKGNPFLD 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 62.6 bits (152), Expect = 8e-11
Identities = 36/238 (15%), Positives = 64/238 (26%), Gaps = 35/238 (14%)
Query: 5 LMRSLRLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNISSNFVS-- 62
+R L + L+ L LE + + + L L + +
Sbjct: 88 ALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWL 147
Query: 63 ------IDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFG---------NMLN 107
+ ++ + + L L L N G +L
Sbjct: 148 KPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLA 207
Query: 108 LSDNKLAIIQNMSSGCLKN--SLESLHLEVNHFTGPIPDLG--GFSSMKRLYLSDNLLNG 163
L + + + S L+ L L N S + L LS L
Sbjct: 208 LRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK- 266
Query: 164 TINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGP 221
+ K + KL + LS N L + +LP + + + + N F
Sbjct: 267 QVPKGLPA--KLSVLDLSYNRLDRNPSPD---ELPQVGN--------LSLKGNPFLDS 311
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 57.6 bits (139), Expect = 3e-09
Identities = 37/237 (15%), Positives = 64/237 (27%), Gaps = 46/237 (19%)
Query: 142 IPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLS 201
+ G S ++ L L + + GT + + ++ L+ L +++ L +L
Sbjct: 88 ALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILN---LRNVSWATRDAWLAELQ 144
Query: 202 SRFGTSNPGIDISSNHFEGPIPPLPSNSS---FLNLSKNRFSRSI----SLCSISGSKLT 254
+ I+ H L+LS N +LC + L
Sbjct: 145 QWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQ 204
Query: 255 YIDLSSNLLSGKLPDCWWMFD---SLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFN 311
+ L + + C + L LDL +NS +
Sbjct: 205 VLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD-AAGAPSCDWP----------- 252
Query: 312 RRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISG 368
L + L A L VLDLS N +
Sbjct: 253 --------SQL----------NSLNLSFTGLKQVPK---GLPAKLSVLDLSYNRLDR 288
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 3e-06
Identities = 50/305 (16%), Positives = 78/305 (25%), Gaps = 58/305 (19%)
Query: 227 SNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDS---LVILDLG 283
S L I L + + + + ++ L L L
Sbjct: 44 SLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLE 103
Query: 284 NNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFH 343
N +G P + + W L Q + + + +
Sbjct: 104 NLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAW-LAELQQWLKPGLKVLSIAQAHSL 162
Query: 344 GKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYV 403
+ Q+ F L LDLS N G+ +
Sbjct: 163 NFSCEQVRVFPALSTLDLSDNPELGERG-----LISALCP-------------------- 197
Query: 404 HHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLN---GAVPEEIMDLVGLVALNLS 460
++ L L + + G V L L+LS
Sbjct: 198 ---------------------LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLS 236
Query: 461 RNHLTGQNSPKIGQ-LKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTG 519
N L L+ L+LS L +P L LSV+DLSYN L P+
Sbjct: 237 HNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPAK--LSVLDLSYNRLDR-NPSP 292
Query: 520 TQLQS 524
+L
Sbjct: 293 DELPQ 297
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 8e-06
Identities = 54/272 (19%), Positives = 82/272 (30%), Gaps = 43/272 (15%)
Query: 230 SFLNLSKNRFSRSI---SLCSISGSKLTYIDLSSNLLSGKLPDCWWMFD--SLVILDLGN 284
L + R I +L + S L + L + ++G P L IL+L N
Sbjct: 71 KRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRN 130
Query: 285 NSFSGRIPDSMGFLQNIQTQFTQ--QQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKF 342
S++ R Q ++ F ++ + L N
Sbjct: 131 VSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALS-----TLDLSDNPE 185
Query: 343 HGKTPF--QLCQFAF--LQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFV 398
G+ LC F LQVL L + C A Q + D
Sbjct: 186 LGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLD----------- 234
Query: 399 GPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALN 458
+ H S +D + SL LS L VP+ + L L+
Sbjct: 235 ----LSHNSLRDAAGA-------PSCDWPSQLNSLNLSFTGLK-QVPKGL--PAKLSVLD 280
Query: 459 LSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVG 490
LS N L +P +L + L L N +
Sbjct: 281 LSYNRLDR--NPSPDELPQVGNLSLKGNPFLD 310
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 67.1 bits (164), Expect = 5e-12
Identities = 58/247 (23%), Positives = 98/247 (39%), Gaps = 28/247 (11%)
Query: 54 SNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNM-----LNL 108
IS+N ++L NQ+Q +S +H+ +LE L L N + F + L L
Sbjct: 60 DGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119
Query: 109 SDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPD--LGGFSSMKRLYLSD-NLLNGTI 165
DN+L I N + L L+ L L N IP S++RL L + L+
Sbjct: 120 FDNRLTTIPNGAFVYLSK-LKELWLRNNPIES-IPSYAFNRIPSLRRLDLGELKRLSYIS 177
Query: 166 NKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHF----EGP 221
+ + L L+ +L ++ N+ KL +L D+S NH G
Sbjct: 178 EGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDEL-----------DLSGNHLSAIRPGS 226
Query: 222 IPPLPSNSSFLNLSKNRFSRSISLCSISG-SKLTYIDLSSNLLSGKLPDCWWMFDSLVIL 280
L + L + +++ + I + L I+L+ N L+ D + L +
Sbjct: 227 FQGLM-HLQKLWMIQSQI-QVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERI 284
Query: 281 DLGNNSF 287
L +N +
Sbjct: 285 HLHHNPW 291
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 3e-06
Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 1/91 (1%)
Query: 430 IKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLV 489
+ L L N++ L L L LSRNH+ L +L+ L+L N+L
Sbjct: 66 TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT 125
Query: 490 GGIPSSLSPLSVLSVMDLSYNNLSGKIPTGT 520
+ LS L + L N + IP+
Sbjct: 126 TIPNGAFVYLSKLKELWLRNNPIE-SIPSYA 155
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 4e-06
Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 4/90 (4%)
Query: 431 KSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVG 490
+ L VP+ I LNL N + L+ L+ L LSRN +
Sbjct: 46 SKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT 102
Query: 491 GIPSSLSPLSVLSVMDLSYNNLSGKIPTGT 520
+ + L+ L+ ++L N L+ IP G
Sbjct: 103 IEIGAFNGLANLNTLELFDNRLT-TIPNGA 131
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 6e-06
Identities = 25/97 (25%), Positives = 38/97 (39%), Gaps = 4/97 (4%)
Query: 425 STLGLIKSLELSSNKLNGAVPEEI-MDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDL 483
+ + ++ L+L K + E L L LNL+ +L P + L LD LDL
Sbjct: 157 NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR--EIPNLTPLIKLDELDL 214
Query: 484 SRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTGT 520
S N L P S L L + + + + I
Sbjct: 215 SGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNA 250
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 2e-05
Identities = 22/96 (22%), Positives = 32/96 (33%)
Query: 425 STLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLS 484
L ++ L+LS N + L L L L N LT + L L L L
Sbjct: 85 KHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR 144
Query: 485 RNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTGT 520
N + + + + L +DL I G
Sbjct: 145 NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGA 180
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 6e-05
Identities = 38/193 (19%), Positives = 56/193 (29%), Gaps = 52/193 (26%)
Query: 333 RFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKV 392
R + L N+ L++L LS N+I FN +
Sbjct: 67 RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANL------------ 114
Query: 393 YYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLV 452
+LEL N+L + L
Sbjct: 115 --------------------------------------NTLELFDNRLTTIPNGAFVYLS 136
Query: 453 GLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSR-NQLVGGIPSSLSPLSVLSVMDLSYNN 511
L L L N + S ++ SL LDL +L + LS L ++L+ N
Sbjct: 137 KLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN 196
Query: 512 LSGKIPTGTQLQS 524
L +IP T L
Sbjct: 197 LR-EIPNLTPLIK 208
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.0 bits (165), Expect = 6e-12
Identities = 77/527 (14%), Positives = 154/527 (29%), Gaps = 137/527 (25%)
Query: 48 CYLRPLSNISSNFV----SIDLSF--NQLQGSIPDSSQHMV-YLEHLSLMFNELEGGIPK 100
L + FV I+ F + ++ S Y+E ++N+ + K
Sbjct: 70 TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV-FAK 128
Query: 101 FFGN-----------MLNLSDNKLAIIQNMSSGCLKNSL--ESL--HLEVNHFTGPI--P 143
+ + +L L K +I + G K + + + I
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVL-GSGKTWVALDVCLSYKVQCKMDFKIFWL 187
Query: 144 DLGGFSS-------MKRLY---------LSDNLLNGTINKSIGQIFKLEITCLSQ--NSL 185
+L +S +++L SD+ N + Q + N L
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 186 TDLANIQIKGKLP--DLSSR--FGTSNPGI----------DISSNHFEGPIPPLPSN--- 228
L N+Q +LS + T + IS +H + P
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307
Query: 229 SSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKL---PDCW--WMFDSLVILDLG 283
+L+ R + + + ++++ + W W +
Sbjct: 308 LKYLDCRPQDLPREV--LTTN-------PRRLSIIAESIRDGLATWDNW-------KHVN 351
Query: 284 NNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVF------------IVWELLTTQTFESWE 331
+ + I S L ++ ++ F+R +VF ++W +
Sbjct: 352 CDKLTTIIESS---LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408
Query: 332 ERFVR---LKSNKFHGKTPFQLCQFAFLQVLD--LSLNNI---SGKIPKCFNNFTAMTQE 383
+ + ++ L+ +L+ IPK F++
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL---- 464
Query: 384 RSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELS--SNKL- 440
P + Y+Y+ +G HH K R TL + L+ K+
Sbjct: 465 --IPPYLDQYFYSHIG----HHL----------KNIEHPERMTLFRMVFLDFRFLEQKIR 508
Query: 441 ----NGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKS--LDFL 481
I++ L L + ++ N PK +L + LDFL
Sbjct: 509 HDSTAWNASGSILNT--LQQLKFYKPYIC-DNDPKYERLVNAILDFL 552
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.2 bits (150), Expect = 4e-10
Identities = 79/484 (16%), Positives = 145/484 (29%), Gaps = 125/484 (25%)
Query: 63 IDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSG 122
+D + Q D L F N + D +Q+M
Sbjct: 7 MDFETGEHQYQYKD------ILSVF----------EDAFVDN-FDCKD-----VQDMPKS 44
Query: 123 CLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLY-LSDNLLNGTINKSIGQIFKLEITCLS 181
L E++H D ++ L LL+ + + Q F E+ L
Sbjct: 45 ILSKE------EIDHIIM-SKD-----AVSGTLRLFWTLLSK--QEEMVQKFVEEV--LR 88
Query: 182 QNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPL--PSNSSFLNLSKN-- 237
N ++ I+ + + P + +R + N +L L +
Sbjct: 89 INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ---VFAKYNVSRLQPYLKLRQALL 145
Query: 238 --RFSRSISLCSISGS-K--LTYIDLSSNLLSGKLPD-CWWMFDSLVILDLGNNSFSGRI 291
R ++++ + + GS K + S + K+ +W L+L N
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW-------LNLKNC----NS 194
Query: 292 PDS-MGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQL 350
P++ + LQ + Q +R S + RL +K P++
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSS----NIKLRIHSIQAELRRLLKSK-----PYEN 245
Query: 351 CQFAFLQVLDLSLNNISGKIPKCFNNF-----TAMTQERSSDPTIKVYYYTFVGPPYVHH 405
C L VL N+ K +N F +T + + F+ H
Sbjct: 246 C----LLVLL----NVQ--NAKAWNAFNLSCKILLT---TRFKQV----TDFLSAATTTH 288
Query: 406 YSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMD----LVGLVALNLSR 461
S M + L+K L+ L P E++ + ++A ++
Sbjct: 289 ISLDHHSMTLTPDEVKSL-----LLKYLDCRPQDL----PREVLTTNPRRLSIIAESIRD 339
Query: 462 NHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLS-----GKI 516
T N + K ++ S N L P+ + ++ LS I
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLE---PAEYRKM---------FDRLSVFPPSAHI 387
Query: 517 PTGT 520
PT
Sbjct: 388 PTIL 391
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 66.7 bits (163), Expect = 7e-12
Identities = 60/249 (24%), Positives = 95/249 (38%), Gaps = 32/249 (12%)
Query: 54 SNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNM-----LNL 108
I SN ++L N +Q D+ +H+ +LE L L N + F + L L
Sbjct: 71 QGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130
Query: 109 SDNKLAIIQNMSSGCLKN--SLESLHLEVNHFTGPIPD--LGGFSSMKRLYLSD-NLLNG 163
DN L +I SG + L L L N IP S+ RL L + L
Sbjct: 131 FDNWLTVIP---SGAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLMRLDLGELKKLEY 186
Query: 164 TINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHF----E 219
+ +F L+ L ++ D+ N+ L L +++S NHF
Sbjct: 187 ISEGAFEGLFNLKYLNLGMCNIKDMPNLT---PLVGLEE--------LEMSGNHFPEIRP 235
Query: 220 GPIPPLPSNSSFLNLSKNRFSRSISLCSISG-SKLTYIDLSSNLLSGKLPDCWWMFDSLV 278
G L + L + ++ I + G + L ++L+ N LS D + LV
Sbjct: 236 GSFHGLS-SLKKLWVMNSQV-SLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV 293
Query: 279 ILDLGNNSF 287
L L +N +
Sbjct: 294 ELHLHHNPW 302
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 8e-08
Identities = 45/187 (24%), Positives = 72/187 (38%), Gaps = 36/187 (19%)
Query: 11 LHSLRYLNLEENNLANC-SDWFQVIGKLHSLKTLTSHSCYLRPLSNISSNFVSIDLSFNQ 69
L SL L L +N L S F+ L L+ L L N
Sbjct: 122 LASLNTLELFDNWLTVIPSGAFE---YLSKLREL--------------------WLRNNP 158
Query: 70 LQGSIPDSS-QHMVYLEHLSLM-FNELEGGIPKFFGNM-----LNLSDNKLAIIQNMSSG 122
++ SIP + + L L L +LE F + LNL + + N++
Sbjct: 159 IE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTP- 216
Query: 123 CLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLS 181
L LE L + NHF P G SS+K+L++ ++ ++ + + L L+
Sbjct: 217 -LVG-LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLA 274
Query: 182 QNSLTDL 188
N+L+ L
Sbjct: 275 HNNLSSL 281
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 9e-08
Identities = 35/164 (21%), Positives = 66/164 (40%), Gaps = 24/164 (14%)
Query: 11 LHSLRYLNLEENNLANC-SDWFQVIGKLHSLKTLTSHSCYLRPLSNIS-------SNFVS 62
L LR L L N + + S F ++ SL L + L IS N
Sbjct: 146 LSKLRELWLRNNPIESIPSYAFN---RVPSLMRLDLGEL--KKLEYISEGAFEGLFNLKY 200
Query: 63 IDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNM-----LNLSDNKLAIIQ 117
++L ++ +P+ + +V LE L + N P F + L + ++++++I+
Sbjct: 201 LNLGMCNIK-DMPNLT-PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIE 258
Query: 118 NMSSGCLKNSLESLHLEVNHFTGPIPD--LGGFSSMKRLYLSDN 159
+ L + L L+L N+ + +P + L+L N
Sbjct: 259 RNAFDGLAS-LVELNLAHNNLSS-LPHDLFTPLRYLVELHLHHN 300
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 6e-07
Identities = 42/239 (17%), Positives = 69/239 (28%), Gaps = 49/239 (20%)
Query: 333 RFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIK- 391
R++ L N L+VL L N+I FN ++ D +
Sbjct: 78 RYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTV 137
Query: 392 VYYYTFVGPP-------------YVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSN 438
+ F + Y+F + + L+L
Sbjct: 138 IPSGAFEYLSKLRELWLRNNPIESIPSYAFNR----------------VPSLMRLDLGEL 181
Query: 439 KLNGAVPEEI-MDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLS 497
K + E L L LNL ++ + P + L L+ L++S N P S
Sbjct: 182 KKLEYISEGAFEGLFNLKYLNLGMCNIK--DMPNLTPLVGLEELEMSGNHFPEIRPGSFH 239
Query: 498 PLSVLSVMDLSYNNLSGKIPTGT---------------QLQSFNGSVYAGNPELCGLPL 541
LS L + + + +S I L S ++ L L L
Sbjct: 240 GLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHL 297
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 3e-06
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Query: 431 KSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVG 490
+ + L+ VP+ I LNL N++ + L L+ L L RN +
Sbjct: 57 SKVVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ 113
Query: 491 GIPSSLSPLSVLSVMDLSYNNLSGKIPTGT 520
+ + L+ L+ ++L N L+ IP+G
Sbjct: 114 IEVGAFNGLASLNTLELFDNWLT-VIPSGA 142
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 6e-06
Identities = 23/91 (25%), Positives = 33/91 (36%), Gaps = 1/91 (1%)
Query: 430 IKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLV 489
+ L L N + + L L L L RN + L SL+ L+L N L
Sbjct: 77 TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT 136
Query: 490 GGIPSSLSPLSVLSVMDLSYNNLSGKIPTGT 520
+ LS L + L N + IP+
Sbjct: 137 VIPSGAFEYLSKLRELWLRNNPIE-SIPSYA 166
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 9e-11
Identities = 28/161 (17%), Positives = 63/161 (39%), Gaps = 16/161 (9%)
Query: 11 LHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNISS--NFVSIDLSFN 68
++SL Y+ L N+ + + I H++K LT ++ + + IS N + +
Sbjct: 43 MNSLTYITLANINVTDLTG----IEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGK 98
Query: 69 QLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNM-----LNLSDN-KLAIIQNMSSG 122
+ + + L L + + + I + ++LS N + I + +
Sbjct: 99 DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKT- 157
Query: 123 CLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNG 163
L L+SL+++ + + F + +LY + G
Sbjct: 158 -LPE-LKSLNIQFDGVHD-YRGIEDFPKLNQLYAFSQTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 6e-10
Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 1/89 (1%)
Query: 425 STLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLS 484
S L ++ L + + + L L L++S + KI L ++ +DLS
Sbjct: 85 SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLS 144
Query: 485 RNQLVGGIPSSLSPLSVLSVMDLSYNNLS 513
N + I L L L +++ ++ +
Sbjct: 145 YNGAITDI-MPLKTLPELKSLNIQFDGVH 172
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 5e-08
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Query: 431 KSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVG 490
K L +++ I L L L + +T P + L SL LD+S +
Sbjct: 69 KDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126
Query: 491 GIPSSLSPLSVLSVMDLSYNNLSGKI 516
I + ++ L ++ +DLSYN I
Sbjct: 127 SILTKINTLPKVNSIDLSYNGAITDI 152
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 2e-07
Identities = 30/163 (18%), Positives = 61/163 (37%), Gaps = 19/163 (11%)
Query: 106 LNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTI 165
+ L++ + + + N ++ L + H T + G S+++RL + +
Sbjct: 49 ITLANINVTDLTGIEY--AHN-IKDLTINNIHATN-YNPISGLSNLERLRIMGKDVTSDK 104
Query: 166 NKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPL 225
++ + L + +S ++ D +I LP ++S ID+S N I PL
Sbjct: 105 IPNLSGLTSLTLLDISHSAHDDSILTKINT-LPKVNS--------IDLSYNGAITDIMPL 155
Query: 226 PSNSS--FLNLSKNRFSRSISLCSISG-SKLTYIDLSSNLLSG 265
+ LN+ + I KL + S + G
Sbjct: 156 KTLPELKSLNIQFDGVH---DYRGIEDFPKLNQLYAFSQTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 6e-07
Identities = 18/90 (20%), Positives = 38/90 (42%), Gaps = 4/90 (4%)
Query: 430 IKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLV 489
+ + L++ + I + L ++ H T N I L +L+ L + +
Sbjct: 46 LTYITLANINVTDL--TGIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVT 101
Query: 490 GGIPSSLSPLSVLSVMDLSYNNLSGKIPTG 519
+LS L+ L+++D+S++ I T
Sbjct: 102 SDKIPNLSGLTSLTLLDISHSAHDDSILTK 131
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 7e-07
Identities = 13/84 (15%), Positives = 33/84 (39%), Gaps = 3/84 (3%)
Query: 431 KSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVG 490
L++S + + ++ +I L + +++LS N P + L L L++ + +
Sbjct: 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHD 173
Query: 491 GIPSSLSPLSVLSVMDLSYNNLSG 514
+ L+ + + G
Sbjct: 174 --YRGIEDFPKLNQLYAFSQTIGG 195
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 61.7 bits (149), Expect = 3e-10
Identities = 58/341 (17%), Positives = 117/341 (34%), Gaps = 54/341 (15%)
Query: 11 LHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNISS--NFVSIDLSFN 68
L+S+ + +++ + I L ++ L + L + +++ N + L N
Sbjct: 42 LNSIDQIIANNSDIKSVQG----IQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDEN 97
Query: 69 QLQGSIPDSSQHMVYLEHLSLMFNELE--GGIPKFFG-NMLNLSDNKLAIIQNMSSGCLK 125
+++ + S + + L+ LSL N + G+ L L +NK+ I +S L
Sbjct: 98 KIK-DL-SSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSR--LT 153
Query: 126 NSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSL 185
L++L LE N + I L G + ++ LYLS N I+ L +L
Sbjct: 154 K-LDTLSLEDNQISD-IVPLAGLTKLQNLYLSKN----------------HISDLR--AL 193
Query: 186 TDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISL 245
L N+ + +++ S SN N KN ++
Sbjct: 194 AGLKNLDV-----------------LELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTP 236
Query: 246 CSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQ----NI 301
IS L + ++F V + F GR+ + + ++
Sbjct: 237 EIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDV 296
Query: 302 QTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKF 342
+ + T + T Q + + +++
Sbjct: 297 DGTVIKTKVEAGTRITAPKPPTKQGYVFKGWYTEKNGGHEW 337
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 1e-05
Identities = 30/197 (15%), Positives = 62/197 (31%), Gaps = 32/197 (16%)
Query: 106 LNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTI 165
+ I + +L+ T +S+ ++ +++ + ++
Sbjct: 4 TITVSTPIKQIFPDDA--FAE-TIKDNLKKKSVTD-AVTQNELNSIDQIIANNSDIK-SV 58
Query: 166 NKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNP--------------GI 211
+ I + + L+ N LTD+ + L +L F N +
Sbjct: 59 -QGIQYLPNVTKLFLNGNKLTDIKPL---TNLKNLGWLFLDENKIKDLSSLKDLKKLKSL 114
Query: 212 DISSNHFEGPIPPLPSNSSF--LNLSKNRFSRSISLCSISG-SKLTYIDLSSNLLSGKLP 268
+ N I L L L N+ + + +S +KL + L N +S +
Sbjct: 115 SLEHNGISD-INGLVHLPQLESLYLGNNKIT---DITVLSRLTKLDTLSLEDNQIS-DIV 169
Query: 269 DCWWMFDSLVILDLGNN 285
+ L L L N
Sbjct: 170 PLAGL-TKLQNLYLSKN 185
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 5e-05
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 12/92 (13%)
Query: 425 STLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLS 484
L +KSL L N ++ ++ L L +L L N +T + + +L LD L L
Sbjct: 106 KDLKKLKSLSLEHNGIS--DINGLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLE 161
Query: 485 RNQLVGGIPSSLSPLS---VLSVMDLSYNNLS 513
NQ+ S + PL+ L + LS N++S
Sbjct: 162 DNQI-----SDIVPLAGLTKLQNLYLSKNHIS 188
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 6e-04
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 12/87 (13%)
Query: 430 IKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLV 489
+ L L+ NKL P + +L L L L N + + + LK L L L N +
Sbjct: 67 VTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK--DLSSLKDLKKLKSLSLEHNGI- 121
Query: 490 GGIPSSLSPLSVLS---VMDLSYNNLS 513
S ++ L L + L N ++
Sbjct: 122 ----SDINGLVHLPQLESLYLGNNKIT 144
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 5e-10
Identities = 58/273 (21%), Positives = 100/273 (36%), Gaps = 46/273 (16%)
Query: 54 SNISSNFVSIDLSFNQLQGSIPDSS-QHMVYLEHLSLMFN---ELEGGIPKFFGN--MLN 107
S ++ S+DLS N++ I +S Q V L+ L L N +E G+ L+
Sbjct: 48 SGLTEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106
Query: 108 LSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINK 167
LS N L+ + + L + L L+L N + + + FS + +L + T K
Sbjct: 107 LSYNYLSNLSSSWFKPLSS-LTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNMDTFTK 164
Query: 168 SIGQIF----KLE--------ITCLSQNSLTDLANI--------QIKGKLPDLSSRFGTS 207
+ F LE + SL + N+ Q L ++ +S
Sbjct: 165 IQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSS 223
Query: 208 NPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSIS----------GSKLTYID 257
+++ + S +L K R++ + S S L ++
Sbjct: 224 VECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELE 283
Query: 258 LSSNLLSGKLPDCWWMFD---SLVILDLGNNSF 287
S N L +PD +FD SL + L N +
Sbjct: 284 FSRNQLKS-VPD--GIFDRLTSLQKIWLHTNPW 313
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 1e-07
Identities = 33/176 (18%), Positives = 54/176 (30%), Gaps = 28/176 (15%)
Query: 10 RLHSLRYLNLEENNLANCSD--WFQVIGKLHSLKTLTSHSCYLRPLSNISSN-FVS---- 62
L SL +LNL N + F + KL L+ + + I F
Sbjct: 122 PLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDT-----FTKIQRKDFAGLTFL 176
Query: 63 --IDLSFNQLQGSIPDSS-QHMVYLEHLSLMFNELEGGIPKFFGNM-----LNLSDNKLA 114
+++ + LQ S S + + + HL L + + F L L D L
Sbjct: 177 EELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLD 235
Query: 115 IIQNMS-------SGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNG 163
S K + ++ + + L S + L S N L
Sbjct: 236 TFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS 291
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 2e-05
Identities = 24/167 (14%), Positives = 51/167 (30%), Gaps = 44/167 (26%)
Query: 10 RLHSLRYLNLEENNLAN-CSDWFQVIGKLHSLKTLTSHSCYLRPLSNISSNFVSIDLSFN 68
L L L ++ ++L + + + ++ L L
Sbjct: 172 GLTFLEELEIDASDLQSYEPKSLK---SIQNVSHL--------------------ILHMK 208
Query: 69 QLQGSIPDSS-QHMVYLEHLSLM--------FNELEGGIPKFFGNM-----LNLSDNKLA 114
Q + + +E L L F+EL G + ++D L
Sbjct: 209 QHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF 267
Query: 115 IIQNMSSGCLKNSLESLHLEVNHFTGPIPD--LGGFSSMKRLYLSDN 159
+ + + + L L N +PD +S+++++L N
Sbjct: 268 QVMKLLNQI--SGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTN 311
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 4e-05
Identities = 30/113 (26%), Positives = 44/113 (38%), Gaps = 2/113 (1%)
Query: 430 IKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLV 489
+KSL+LS+N++ ++ V L AL L+ N + L SL+ LDLS N L
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
Query: 490 GGIPSSLSPLSVLSVMDLSYNNLSGKIPTGT--QLQSFNGSVYAGNPELCGLP 540
S PLS L+ ++L N T L +
Sbjct: 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 166
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 1e-04
Identities = 53/339 (15%), Positives = 98/339 (28%), Gaps = 99/339 (29%)
Query: 207 SNPGIDISSNHFEGPIPP-LPSNSSFLNLSKNRFSRSISLCSISG-SKLTYIDLSSNLLS 264
N SS IP L L+LS NR + IS + L + L+SN ++
Sbjct: 32 RNGICKGSSGSLNS-IPSGLTEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN 89
Query: 265 GKLPDCWWMFDSLV---ILDLGNNSFSGRIP----DSMGFLQ-------NIQTQFTQQQF 310
+ + F SL LDL N S + + L +T F
Sbjct: 90 -TIEE--DSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLF 145
Query: 311 NRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKI 370
+ T + + + F +++ F G FL+ L++ +++
Sbjct: 146 SHLTKLQILRVG-------NMDTFTKIQRKDFAG--------LTFLEELEIDASDLQSYE 190
Query: 371 PKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLI 430
PK + +
Sbjct: 191 PKSLKSIQN--------------------------------------------------V 200
Query: 431 KSLELSSNKLNGAVPEEIMD-LVGLVALNLSRNHLTGQNSPKI--------GQLKSLDFL 481
L L + + E +D + L L L + ++ + + +
Sbjct: 201 SHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNV 259
Query: 482 DLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTGT 520
++ L + L+ +S L ++ S N L +P G
Sbjct: 260 KITDESLFQ-VMKLLNQISGLLELEFSRNQLKS-VPDGI 296
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 2e-04
Identities = 47/261 (18%), Positives = 89/261 (34%), Gaps = 34/261 (13%)
Query: 231 FLNLSKNRFSRSISLCSISG-SKLTYIDLSSNLLSGKLPDCWWMFD---SLVILDLGNNS 286
L L+ N + +I S S L ++DLS N LS L W F SL L+L N
Sbjct: 80 ALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLS-NLSSSW--FKPLSSLTFLNLLGNP 135
Query: 287 FSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEE-RFVRLKSNKFHGK 345
+ + ++ F + Q + I + F + + ++
Sbjct: 136 YK-TLGETSLFSHLTKLQILRVGNMDTFTKI-----QRKDFAGLTFLEELEIDASDLQSY 189
Query: 346 TPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHH 405
P L + L L + + + +++ D +
Sbjct: 190 EPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDL--------------- 234
Query: 406 YSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLT 465
+F + T + + + T ++++++ L V + + + GL+ L SRN L
Sbjct: 235 DTFHFSELSTGETNSLIKKFTF---RNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK 290
Query: 466 GQNSPKIGQLKSLDFLDLSRN 486
+L SL + L N
Sbjct: 291 SVPDGIFDRLTSLQKIWLHTN 311
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 1e-09
Identities = 50/244 (20%), Positives = 83/244 (34%), Gaps = 44/244 (18%)
Query: 54 SNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNM-----LNL 108
I + I L N++ S + L L L N L F + L+L
Sbjct: 28 VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87
Query: 109 SDNKLAIIQNMSSGCLKN--SLESLHLEVNHFTGPIPD--LGGFSSMKRLYLSDNLLNGT 164
SDN A ++++ L +LHL+ + G ++++ LYL DN
Sbjct: 88 SDN--AQLRSVDPATFHGLGRLHTLHLDRCGLQE-LGPGLFRGLAALQYLYLQDN----- 139
Query: 165 INKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPP 224
+ L ++ DL N+ L L N + F G
Sbjct: 140 -----------ALQALPDDTFRDLGNLT---HL-FLH-----GNRISSVPERAFRG---- 175
Query: 225 LPSNSSFLNLSKNRFSRSISLCSISG-SKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLG 283
L + L L +NR + + +L + L +N LS + +L L L
Sbjct: 176 LH-SLDRLLLHQNRV-AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN 233
Query: 284 NNSF 287
+N +
Sbjct: 234 DNPW 237
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 1e-07
Identities = 35/168 (20%), Positives = 58/168 (34%), Gaps = 24/168 (14%)
Query: 10 RLHSLRYLNLEENNLANCS-DWFQVIGKLHSLKTLT-SHSCYLRPLSNIS----SNFVSI 63
+L L L N LA F L L+ L S + LR + + ++
Sbjct: 54 ACRNLTILWLHSNVLARIDAAAFT---GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110
Query: 64 DLSFNQLQGSIPDSS-QHMVYLEHLSLMFNELEGGIPKFFGNM-----LNLSDNKLAIIQ 117
L LQ + + + L++L L N L+ F ++ L L N+++ +
Sbjct: 111 HLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169
Query: 118 NMSSGCLKN--SLESLHLEVNHFTGPIPD--LGGFSSMKRLYLSDNLL 161
+ SL+ L L N + + LYL N L
Sbjct: 170 E---RAFRGLHSLDRLLLHQNRVAH-VHPHAFRDLGRLMTLYLFANNL 213
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 8e-07
Identities = 34/160 (21%), Positives = 62/160 (38%), Gaps = 39/160 (24%)
Query: 11 LHSLRYLNLEENNLANC-SDWFQVIGKLHSLKTLTSHSCYLRPLSNISSNFVSIDLSFNQ 69
L L L+L+ L F+ L +L+ L L N
Sbjct: 104 LGRLHTLHLDRCGLQELGPGLFR---GLAALQYL--------------------YLQDNA 140
Query: 70 LQGSIPDSS-QHMVYLEHLSLMFNELEGGIPKFFGNM-----LNLSDNKLAIIQNMSSGC 123
LQ ++PD + + + L HL L N + + F + L L N+ + ++
Sbjct: 141 LQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR---VAHVHPHA 196
Query: 124 LKN--SLESLHLEVNHFTGPIPD--LGGFSSMKRLYLSDN 159
++ L +L+L N+ + +P L +++ L L+DN
Sbjct: 197 FRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDN 235
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 2e-06
Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 2/92 (2%)
Query: 430 IKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLV 489
+ + L N+++ L L L N L ++ L L+ LDLS N +
Sbjct: 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93
Query: 490 GGIPSS-LSPLSVLSVMDLSYNNLSGKIPTGT 520
+ + L L + L L ++ G
Sbjct: 94 RSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGL 124
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 6e-06
Identities = 36/223 (16%), Positives = 58/223 (26%), Gaps = 45/223 (20%)
Query: 336 RLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQER-SSDPTIKVYY 394
L N+ L +L L N ++ F + Q S + ++
Sbjct: 38 FLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS-- 95
Query: 395 YTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEI-MDLVG 453
V +F LG + +L L L + + L
Sbjct: 96 --------VDPATFHG----------------LGRLHTLHLDRCGLQ-ELGPGLFRGLAA 130
Query: 454 LVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLS 513
L L L N L L +L L L N++ + L L + L N ++
Sbjct: 131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190
Query: 514 GKIPTGT---------------QLQSFNGSVYAGNPELCGLPL 541
+ L + A L L L
Sbjct: 191 -HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL 232
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 3/89 (3%)
Query: 432 SLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGG 491
+ L AVP I + L N ++ + ++L L L N L
Sbjct: 15 TTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI 71
Query: 492 IPSSLSPLSVLSVMDLSYNNLSGKIPTGT 520
++ + L++L +DLS N + T
Sbjct: 72 DAAAFTGLALLEQLDLSDNAQLRSVDPAT 100
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 1e-08
Identities = 37/259 (14%), Positives = 86/259 (33%), Gaps = 44/259 (16%)
Query: 38 HSLKTLTSHSCYLRPLSNISSNFVSIDLSFNQLQGSIPDSS-QHMVYLEHLSLMFNELEG 96
H + ++ + ++ + ++ L L+ +IP + ++ + + + +
Sbjct: 11 HQEEDFRVTCKDIQRIPSLPPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQ 69
Query: 97 GIPK--FFG----NMLNLSDNKLAIIQNMSSGCLKN--SLESLHLEVNHFTGPIPDLGGF 148
+ F+ + + + + + + LK L+ L + PDL
Sbjct: 70 QLESHSFYNLSKVTHIEIRNTRN--LTYIDPDALKELPLLKFLGIFNTGLKM-FPDLTKV 126
Query: 149 SSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSN 208
S ++ + N +T + N+ L N + KL +N
Sbjct: 127 YSTDIFFILEITDN------------PYMTSIPVNAFQGLCNETLTLKL--------YNN 166
Query: 209 PGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISG--SKLTYIDLSSNLLSGK 266
+ F G + + L+KN++ I + G S + +D+S ++
Sbjct: 167 GFTSVQGYAFNG------TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-A 219
Query: 267 LPDCWWMFDSLVILDLGNN 285
LP + L L N
Sbjct: 220 LPS--KGLEHLKELIARNT 236
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 2e-07
Identities = 32/191 (16%), Positives = 68/191 (35%), Gaps = 16/191 (8%)
Query: 106 LNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPD--LGGFSSMKRLYLSDNLLNG 163
L L + L I + + L N + +++ ++ + S + + + +
Sbjct: 36 LKLIETHLRTIPSHAFSNLPN-ISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT 94
Query: 164 TINKSI-GQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGID-ISSNHFEGP 221
I+ ++ L+ + L ++ T NP + I N F+G
Sbjct: 95 YIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQG- 153
Query: 222 IPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFD----SL 277
L + + L L N F+ S+ + +G+KL + L+ N + F
Sbjct: 154 ---LCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDK--DAFGGVYSGP 207
Query: 278 VILDLGNNSFS 288
+LD+ S +
Sbjct: 208 SLLDVSQTSVT 218
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 56.7 bits (136), Expect = 1e-08
Identities = 34/166 (20%), Positives = 58/166 (34%), Gaps = 17/166 (10%)
Query: 4 LLMRSLRLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNISSNFVS- 62
LL L + +L L E+ L S + + + + S +L S + +
Sbjct: 385 LLTIILLMRALDPLLYEKETLQYFST-LKAVDPMRAAYLDDLRSKFLLENSVLKMEYADV 443
Query: 63 --IDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNM-----LNLSDNKLAI 115
+ L+ L ++ + ++ + HL L N L +P + L SDN L
Sbjct: 444 RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN 500
Query: 116 IQNMSSGCLKNSLESLHLEVNHFTGP--IPDLGGFSSMKRLYLSDN 159
+ + L L+ L L N I L + L L N
Sbjct: 501 VDGV--ANLPR-LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 53.2 bits (127), Expect = 1e-07
Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 6/94 (6%)
Query: 422 EYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFL 481
+ L L+ L+LS N+L A+P + L L L S N L N + L L L
Sbjct: 457 CHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE--NVDGVANLPRLQEL 513
Query: 482 DLSRNQLVGGIPS--SLSPLSVLSVMDLSYNNLS 513
L N+L + L L +++L N+L
Sbjct: 514 LLCNNRL-QQSAAIQPLVSCPRLVLLNLQGNSLC 546
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 52.1 bits (124), Expect = 4e-07
Identities = 37/205 (18%), Positives = 67/205 (32%), Gaps = 12/205 (5%)
Query: 1 MRKLLMRSLRLHSLRYLNLEENNLANCSDWFQVIGKLHSLK-----TLTSHSCYLRPLSN 55
S L L + +L L+ L + +R L
Sbjct: 338 PECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDP 397
Query: 56 ISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAI 115
+ ++ F+ L+ P + ++ L L+ N + + +L+L+ L +
Sbjct: 398 LLYEKETLQY-FSTLKAVDPMRAAYLDDLRSKFLLENSVLK-MEYADVRVLHLAHKDLTV 455
Query: 116 IQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKL 175
+ ++ L + L L N P L ++ L SDN L + + +L
Sbjct: 456 LCHLEQ--LLL-VTHLDLSHNRLRALPPALAALRCLEVLQASDNAL--ENVDGVANLPRL 510
Query: 176 EITCLSQNSLTDLANIQIKGKLPDL 200
+ L N L A IQ P L
Sbjct: 511 QELLLCNNRLQQSAAIQPLVSCPRL 535
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 51.3 bits (122), Expect = 6e-07
Identities = 44/276 (15%), Positives = 78/276 (28%), Gaps = 50/276 (18%)
Query: 3 KLLMRSLRLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNISSNFVS 62
L L H+ R + ++ C S+ S
Sbjct: 307 ASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQS 366
Query: 63 IDLSFNQLQGSIPDSS-------------QHMVYLEHLSLMFNELEGGIPKFFGNMLNLS 109
S +LQ P++ ++Y + F+ L+ P + +L
Sbjct: 367 ELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 426
Query: 110 DNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSI 169
L + LHL T + L + L LS N L + ++
Sbjct: 427 SKFLLENS--VLKMEYADVRVLHLAHKDLTV-LCHLEQLLLVTHLDLSHNRLR-ALPPAL 482
Query: 170 GQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNS 229
+ LE+ S N+L ++ + LP L
Sbjct: 483 AALRCLEVLQASDNALENVDGV---ANLPRL----------------------------- 510
Query: 230 SFLNLSKNRFSRSISLCSISG-SKLTYIDLSSNLLS 264
L L NR +S ++ + +L ++L N L
Sbjct: 511 QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 1e-08
Identities = 46/243 (18%), Positives = 83/243 (34%), Gaps = 43/243 (17%)
Query: 54 SNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPK--FFG----NMLN 107
N+ + ++DLSFN L+ S L+ L L E++ I + + L
Sbjct: 24 DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLI 82
Query: 108 LSDNKLAIIQNMSSGCLKN--SLESLHLEVNHFTGPIPD--LGGFSSMKRLYLSDNLLNG 163
L+ N + Q+++ G SL+ L + + + +G ++K L ++ NL+
Sbjct: 83 LTGNPI---QSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQS 138
Query: 164 TINKSI-GQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPI 222
+ LE LS N + I +
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQ-------------------------SIYCTDLRV-L 172
Query: 223 PPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDL 282
+P + L+LS N I + +L + L +N L + SL + L
Sbjct: 173 HQMPLLNLSLDLSLNPM-NFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWL 231
Query: 283 GNN 285
N
Sbjct: 232 HTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 4e-06
Identities = 27/121 (22%), Positives = 48/121 (39%), Gaps = 9/121 (7%)
Query: 427 LGLIKSLELSSNKLNGAVPEEIMD-LVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSR 485
L + +L L+ N + ++ L L L +L + IG LK+L L+++
Sbjct: 75 LSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133
Query: 486 NQL-VGGIPSSLSPLSVLSVMDLSYNNLSGKIPTG-----TQLQSFNGSVYAGNPELCGL 539
N + +P S L+ L +DLS N + I Q+ N S+ + +
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 192
Query: 540 P 540
Sbjct: 193 Q 193
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 25/102 (24%), Positives = 34/102 (33%), Gaps = 12/102 (11%)
Query: 430 IKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQL- 488
K+L+LS N L L L+LSR + L L L L+ N +
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 489 --VGGIPSSLSPLSVLSVMDLSYNNLSGKIPTG-----TQLQ 523
G S LS L L NL+ + L+
Sbjct: 90 SLALGAFSGLSSLQKL---VAVETNLA-SLENFPIGHLKTLK 127
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 46/256 (17%), Positives = 72/256 (28%), Gaps = 75/256 (29%)
Query: 10 RLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNISSNFVSIDLSFNQ 69
L+ L+L + D L L TL L+ N
Sbjct: 50 SFPELQVLDLSRCEIQTIED--GAYQSLSHLSTL--------------------ILTGNP 87
Query: 70 LQGSIP-DSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSL 128
+Q S+ + + L+ L + LA ++N G LK L
Sbjct: 88 IQ-SLALGAFSGLSSLQK-------------------LVAVETNLASLENFPIGHLKT-L 126
Query: 129 ESLHLEVNHFTGPIPDLGGFSSM---KRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSL 185
+ L++ N FS++ + L LS N +I + L
Sbjct: 127 KELNVAHNLIQS-FKLPEYFSNLTNLEHLDLSSN----------------KIQSIYCTDL 169
Query: 186 TDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISL 245
L + + DLS NP I F+ L L N+
Sbjct: 170 RVLHQMPLLNLSLDLS-----LNPMNFIQPGAFKEI------RLKELALDTNQLKSVPDG 218
Query: 246 CSISGSKLTYIDLSSN 261
+ L I L +N
Sbjct: 219 IFDRLTSLQKIWLHTN 234
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 2e-08
Identities = 56/289 (19%), Positives = 94/289 (32%), Gaps = 52/289 (17%)
Query: 11 LHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLS-NISSNFVSIDLSFNQ 69
+L YL + N L N + L L L + L L + + ++ + N
Sbjct: 84 NTNLTYLACDSNKLTNLD-----VTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNT 138
Query: 70 LQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGN----MLNLSDNKLAIIQNMSSGCLK 125
L I S H L L N+ L+ S NK I + K
Sbjct: 139 LT-EIDVS--HNTQLTELDCHLNKKIT-KLDVTPQTQLTTLDCSFNK---ITELDVSQNK 191
Query: 126 NSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSL 185
L L+ + N+ T DL + L S N L I+ + + +L S N L
Sbjct: 192 L-LNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPL 245
Query: 186 TDLANIQIKGKLPDLSSRFGTSNP--GIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSI 243
T+L L L++ ID++ N + + R + +
Sbjct: 246 TEL----DVSTLSKLTTLHCIQTDLLEIDLTHN----------TQLIYFQAEGCRKIKEL 291
Query: 244 SLCSISGSKLTYIDLSSNLLS----GKLPDCWWMFDSLVILDLGNNSFS 288
+ + +L +D + ++ + P LV L L N +
Sbjct: 292 DVTHNT--QLYLLDCQAAGITELDLSQNP-------KLVYLYLNNTELT 331
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 9e-08
Identities = 48/279 (17%), Positives = 81/279 (29%), Gaps = 32/279 (11%)
Query: 11 LHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLS-NISSNFVSIDLSFNQ 69
L L L NN+ + + +L L S L L + ++ N+
Sbjct: 63 LTGLTKLICTSNNITTLD-----LSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNK 117
Query: 70 LQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLE 129
L + S L +L+ N L + L + I + L
Sbjct: 118 LT-KLDVS--QNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQ-LT 173
Query: 130 SLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLA 189
+L N T D+ + RL N + + Q +L S N LT++
Sbjct: 174 TLDCSFNKITE--LDVSQNKLLNRLNCDTNNIT---KLDLNQNIQLTFLDCSSNKLTEI- 227
Query: 190 NIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSIS 249
++ L L+ D S N S + L+ + I L
Sbjct: 228 DV---TPLTQLTY--------FDCSVNPLTELDVSTLSKLTTLHCIQTDLL-EIDLTHN- 274
Query: 250 GSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFS 288
++L Y +L L +LD +
Sbjct: 275 -TQLIYFQAEGCRKIKELDVT--HNTQLYLLDCQAAGIT 310
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 3e-07
Identities = 40/283 (14%), Positives = 77/283 (27%), Gaps = 39/283 (13%)
Query: 11 LHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNISS--NFVSIDLSFN 68
L YLN N L + L L H +++ ++D SFN
Sbjct: 126 NPLLTYLNCARNTLTEID-----VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFN 180
Query: 69 QLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNM--LNLSDNKLAIIQNMSSGCLKN 126
++ + S L L+ N + + L+ S NK + + L
Sbjct: 181 KIT-ELDVS--QNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNK---LTEIDVTPLTQ 234
Query: 127 SLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLT 186
L VN T D+ S + L+ L Q+ + +
Sbjct: 235 -LTYFDCSVNPLT--ELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKEL 291
Query: 187 DLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEG-PIPPLPSNSSFLNLSKNRFSRSISL 245
D+ + L +D + + P +L L+ + + +
Sbjct: 292 DVTH------NTQLYL--------LDCQAAGITELDLSQNP-KLVYLYLNNTELT-ELDV 335
Query: 246 CSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFS 288
+ KL + + + + +L
Sbjct: 336 SHNT--KLKSLSCVNAHIQ-DFSSVGKI-PALNNNFEAEGQTI 374
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 63/363 (17%), Positives = 116/363 (31%), Gaps = 76/363 (20%)
Query: 10 RLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLR--PLSNISSNFVSIDLSF 67
+L +L L+ +++ + + I KL L L S + LS ++N +
Sbjct: 40 QLATLTSLDCHNSSITDMTG----IEKLTGLTKLICTSNNITTLDLSQ-NTNLTYLACDS 94
Query: 68 NQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGN--MLNLSDNKLAIIQNMSSGCLK 125
N+L ++ + + L +L+ N+L LN + N L I S +
Sbjct: 95 NKLT-NLDVT--PLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEIDV--SHNTQ 149
Query: 126 NSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSL 185
L L +N D+ + + L S N + + Q L N++
Sbjct: 150 --LTELDCHLNKKI-TKLDVTPQTQLTTLDCSFNKIT---ELDVSQNKLLNRLNCDTNNI 203
Query: 186 TDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISL 245
T L D++ N +FL+ S N+ + I +
Sbjct: 204 TKL-----------------------DLNQN----------IQLTFLDCSSNKLT-EIDV 229
Query: 246 CSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQF 305
++ +LTY D S N L+ +L L L + N Q +
Sbjct: 230 TPLT--QLTYFDCSVNPLT-ELDV--STLSKLTTLHCIQTDLL-----EIDLTHNTQLIY 279
Query: 306 TQQQFNRRTVFIVWELLTTQTFESWEE-RFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLN 364
Q + R + + + ++ T L Q L L L+
Sbjct: 280 FQAEGCR--------KIKELDVTHNTQLYLLDCQAAGI---TELDLSQNPKLVYLYLNNT 328
Query: 365 NIS 367
++
Sbjct: 329 ELT 331
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 37/235 (15%), Positives = 80/235 (34%), Gaps = 31/235 (13%)
Query: 58 SNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGN----MLNLSDNKL 113
NF S + ++Q + S + + L L + + + L + N +
Sbjct: 18 DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTGIEKLTGLTKLICTSNNI 76
Query: 114 AIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIF 173
+ N L L + N T D+ + + L N L + Q
Sbjct: 77 TTL---DLSQNTN-LTYLACDSNKLTN--LDVTPLTKLTYLNCDTNKLT---KLDVSQNP 127
Query: 174 KLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLN 233
L ++N+LT++ ++ +L +L +D++ + + L+
Sbjct: 128 LLTYLNCARNTLTEI-DVSHNTQLTELDCHLNKKITKLDVTPQ----------TQLTTLD 176
Query: 234 LSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFS 288
S N+ + + + L ++ +N ++ KL L LD +N +
Sbjct: 177 CSFNKIT-ELDVSQN--KLLNRLNCDTNNIT-KLDLN--QNIQLTFLDCSSNKLT 225
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 3e-05
Identities = 39/230 (16%), Positives = 67/230 (29%), Gaps = 41/230 (17%)
Query: 11 LHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNISSNFVSIDLSFNQL 70
L L Y + N L + L L TL L + +++ N I
Sbjct: 232 LTQLTYFDCSVNPLTELD-----VSTLSKLTTLHCIQTDLLEI-DLTHNTQLIYFQAEGC 285
Query: 71 QGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLES 130
+ H L L + L+LS N L
Sbjct: 286 RKIKELDVTHNTQLYLLDCQAAGIT---------ELDLSQNP--------------KLVY 322
Query: 131 LHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLAN 190
L+L T D+ + +K L + + + S+G+I L ++ +
Sbjct: 323 LYLNNTELT--ELDVSHNTKLKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQTITM-- 376
Query: 191 IQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFS 240
K L + S S +D N P+ P + + + N +
Sbjct: 377 --PKETLTNNSLTIAVSPDLLDQFGN----PMNIEPGDGGVYDQATNTIT 420
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 3e-04
Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 425 STLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLS 484
L + SL+ ++ + I L GL L + N++T + + Q +L +L
Sbjct: 39 EQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNNIT---TLDLSQNTNLTYLACD 93
Query: 485 RNQLVGGIPSSLSPLSVLSVMDLSYNNLS 513
N+L ++PL+ L+ ++ N L+
Sbjct: 94 SNKLTN---LDVTPLTKLTYLNCDTNKLT 119
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 1e-07
Identities = 46/215 (21%), Positives = 83/215 (38%), Gaps = 24/215 (11%)
Query: 11 LHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNISS--NFVSIDLSFN 68
L + NL + ++ + +L ++ + ++ L+ + N + LS N
Sbjct: 18 LANAVKQNLGKQSVTDLVS----QKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHN 73
Query: 69 QLQGSIPDSSQHMVYLEHLSLMFNELEG--GIPKFFGNMLNLSDNKLAIIQNMSSGCLKN 126
Q+ S + + LE LS+ N L+ GIP + L L +N+L ++ LKN
Sbjct: 74 QI--SDLSPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRDTDSLIH--LKN 129
Query: 127 SLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLT 186
LE L + N I LG S ++ L L N + T + ++ K+ L+
Sbjct: 130 -LEILSIRNNKLKS-IVMLGFLSKLEVLDLHGNEI--TNTGGLTRLKKVNWIDLTGQKCV 185
Query: 187 DLA-----NIQIKGKLPDLSSRFGTSNPGIDISSN 216
+ + I + D G IS+
Sbjct: 186 NEPVKYQPELYITNTVKDPD---GRWISPYYISNG 217
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 3e-04
Identities = 32/162 (19%), Positives = 59/162 (36%), Gaps = 25/162 (15%)
Query: 106 LNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTI 165
N ++ + + M N L+ LHL N + + L + ++ L ++ N L
Sbjct: 46 FNGDNSNIQSLAGMQF--FTN-LKELHLSHNQISD-LSPLKDLTKLEELSVNRNRLK--- 98
Query: 166 NKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPL 225
N + L L N L D ++ L +L + I +N + I L
Sbjct: 99 NLNGIPSACLSRLFLDNNELRDTDSLI---HLKNLEI--------LSIRNNKLKS-IVML 146
Query: 226 PSNSS--FLNLSKNRFSRSISLCSISG-SKLTYIDLSSNLLS 264
S L+L N + + ++ K+ +IDL+
Sbjct: 147 GFLSKLEVLDLHGNEIT---NTGGLTRLKKVNWIDLTGQKCV 185
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 4e-04
Identities = 31/183 (16%), Positives = 69/183 (37%), Gaps = 27/183 (14%)
Query: 106 LNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTI 165
NL + + + L +++ + + ++ + + F+++K L+LS N ++ +
Sbjct: 24 QNLGKQSVTDLVSQKE--LSG-VQNFNGDNSNIQS-LAGMQFFTNLKELHLSHNQIS-DL 78
Query: 166 NKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPL 225
+ + KLE +++N L +L I L L + +N L
Sbjct: 79 -SPLKDLTKLEELSVNRNRLKNLNGIPSA-CLSRL-----------FLDNNELRD-TDSL 124
Query: 226 PSNSS--FLNLSKNRFSRSISLCSISG-SKLTYIDLSSNLLSGKLPDCWWMFDSLVILDL 282
+ L++ N+ S+ + SKL +DL N ++ + +DL
Sbjct: 125 IHLKNLEILSIRNNKLK---SIVMLGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDL 179
Query: 283 GNN 285
Sbjct: 180 TGQ 182
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 3e-07
Identities = 40/164 (24%), Positives = 64/164 (39%), Gaps = 25/164 (15%)
Query: 10 RLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNISSNFVSI------ 63
L LNL+ L QV G L L TL L ++ ++
Sbjct: 53 PYTRLTQLNLDRAELTK----LQVDGTLPVLGTL---DLSHNQLQSLPLLGQTLPALTVL 105
Query: 64 DLSFNQLQGSIPDSS-QHMVYLEHLSLMFNELEGGIPKFFGNM-----LNLSDNKLAIIQ 117
D+SFN+L S+P + + + L+ L L NEL+ P L+L++N L
Sbjct: 106 DVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL---T 161
Query: 118 NMSSGCLKN--SLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDN 159
+ +G L +L++L L+ N G + +L N
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 5e-07
Identities = 35/98 (35%), Positives = 44/98 (44%), Gaps = 9/98 (9%)
Query: 431 KSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVG 490
L LS N L +M L LNL R LT G L L LDLS NQL
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT--KLQVDGTLPVLGTLDLSHNQLQ- 90
Query: 491 GIPSSLSPLSVLSVMDLSYNNLSGKIPTG-----TQLQ 523
+P L L+V+D+S+N L+ +P G +LQ
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQ 127
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 2e-05
Identities = 37/176 (21%), Positives = 62/176 (35%), Gaps = 35/176 (19%)
Query: 353 FAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKV 412
+L LS N + +T +T ++ +
Sbjct: 30 PKDTTILHLSENLLYTFSLATLMPYTRLT--------------------QLNLDRAELTK 69
Query: 413 MPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKI 472
+ L ++ +L+LS N+L ++P L L L++S N LT +
Sbjct: 70 LQVDGT--------LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 473 GQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTG-----TQLQ 523
L L L L N+L P L+P L + L+ NNL+ ++P G L
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLD 175
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 1e-04
Identities = 36/146 (24%), Positives = 57/146 (39%), Gaps = 20/146 (13%)
Query: 54 SNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFG----NMLNLS 109
++ + + LS N L + L L+L EL + L+LS
Sbjct: 27 PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDGTLPVLGTLDLS 85
Query: 110 DNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPD--LGGFSSMKRLYLSDNLLNGTINK 167
N+L + + L L L + N T +P L G ++ LYL N L K
Sbjct: 86 HNQLQSLPLLGQT-LPA-LTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNEL-----K 137
Query: 168 SI-GQIF----KLEITCLSQNSLTDL 188
++ + KLE L+ N+LT+L
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTEL 163
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 1e-06
Identities = 40/215 (18%), Positives = 87/215 (40%), Gaps = 23/215 (10%)
Query: 11 LHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNISS--NFVSIDLSFN 68
L+S+ + +++ + I L ++ L + L + +++ N + L N
Sbjct: 45 LNSIDQIIANNSDIKSVQG----IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDEN 100
Query: 69 QLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNM-----LNLSDNKLAIIQNMSSGC 123
+++ + S + + L+ LSL N + ++ L L +NK+ I +S
Sbjct: 101 KVK-DL-SSLKDLKKLKSLSLEHNGIS--DINGLVHLPQLESLYLGNNKITDITVLSR-- 154
Query: 124 LKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQN 183
L L++L LE N + I L G + ++ LYLS N ++ +++ + L++ L
Sbjct: 155 LTK-LDTLSLEDNQISD-IVPLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQ 210
Query: 184 SLTDLANIQIKG--KLPDLSSRFGTSNPGIDISSN 216
+ + + G+ IS +
Sbjct: 211 ECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDD 245
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 3e-04
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 12/92 (13%)
Query: 425 STLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLS 484
L +KSL L N ++ ++ L L +L L N +T + + +L LD L L
Sbjct: 109 KDLKKLKSLSLEHNGIS--DINGLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLE 164
Query: 485 RNQLVGGIPSSLSPLS---VLSVMDLSYNNLS 513
NQ+ S + PL+ L + LS N++S
Sbjct: 165 DNQI-----SDIVPLAGLTKLQNLYLSKNHIS 191
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 1e-06
Identities = 37/149 (24%), Positives = 58/149 (38%), Gaps = 19/149 (12%)
Query: 54 SNISSNFVSIDLSFNQLQGSIPDSS-QHMVYLEHLSLMFNELEGGIPKFFGNM-----LN 107
++ S +DLS N L + + + L L L N L + F + L+
Sbjct: 35 QSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD 94
Query: 108 LSDNKLAIIQNMSSGCLKN--SLESLHLEVNHFTGPIPD--LGGFSSMKRLYLSDNLL-- 161
LS N L + + +LE L L NH + + +++LYLS N +
Sbjct: 95 LSSNHLHTLD---EFLFSDLQALEVLLLYNNHIVV-VDRNAFEDMAQLQKLYLSQNQISR 150
Query: 162 --NGTINKSIGQIFKLEITCLSQNSLTDL 188
I K ++ KL + LS N L L
Sbjct: 151 FPVELI-KDGNKLPKLMLLDLSSNKLKKL 178
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 2e-06
Identities = 41/203 (20%), Positives = 72/203 (35%), Gaps = 48/203 (23%)
Query: 10 RLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNISSNFVSIDLSFNQ 69
RL +L L L N+L S + + +L+ L DLS N
Sbjct: 62 RLTNLHSLLLSHNHLNFISS--EAFVPVPNLRYL--------------------DLSSNH 99
Query: 70 LQGSIPDSS-QHMVYLEHLSLMFNELEGGIPKF-FGNM-----LNLSDNKLAIIQNMSSG 122
L ++ + + LE L L N + + + F +M L LS N+++
Sbjct: 100 LH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIK 157
Query: 123 CLKN--SLESLHLEVNHFTG-PIPDLGGFSSMKR--LYLSDN----------LLNGTINK 167
L L L N P+ DL + + LYL +N L + +
Sbjct: 158 DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYR 217
Query: 168 SIGQI--FKLEITCLSQNSLTDL 188
+ + F+ ++ C+ L ++
Sbjct: 218 QLSSVMDFQEDLYCMHSKKLHNI 240
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 1e-05
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 430 IKSLELSSNKLNGAVPEEIMD-LVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQL 488
L+LS N L+ E L L +L LS NHL +S + +L +LDLS N L
Sbjct: 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100
Query: 489 VGGIPSSLSPLSVLSVMDLSYNNLSGKIPTGT 520
S L L V+ L N++ +
Sbjct: 101 HTLDEFLFSDLQALEVLLLYNNHIV-VVDRNA 131
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 3e-05
Identities = 39/173 (22%), Positives = 66/173 (38%), Gaps = 33/173 (19%)
Query: 353 FAFLQVLDLSLNNISGKIPKC-FNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDK 411
++ +LDLS NN+S + T + S + ++ +F
Sbjct: 38 PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN----------FISSEAFVP- 86
Query: 412 VMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEI-MDLVGLVALNLSRNHLTGQNSP 470
+ ++ L+LSSN L+ + E + DL L L L NH+ +
Sbjct: 87 ---------------VPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRN 130
Query: 471 KIGQLKSLDFLDLSRNQLV---GGIPSSLSPLSVLSVMDLSYNNLSGKIPTGT 520
+ L L LS+NQ+ + + L L ++DLS N L K+P
Sbjct: 131 AFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTD 182
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 6e-06
Identities = 47/245 (19%), Positives = 91/245 (37%), Gaps = 25/245 (10%)
Query: 54 SNISSNFVSIDLSFNQLQGSIPDSS-QHMVYLEHLSLMFNELEGGIPKF-FGNMLNLSD- 110
S++ N + + +L+ I + LE + + N++ I F N+ L +
Sbjct: 26 SDLPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEI 84
Query: 111 --NKLAIIQNMSSGCLKN--SLESLHLEVNHFTGPIPDLGGFSS--MKRLYLSDNLLNGT 164
K + ++ +N +L+ L + +PD+ S L + DN+ T
Sbjct: 85 RIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH-LPDVHKIHSLQKVLLDIQDNINIHT 143
Query: 165 I--NKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPI 222
I N +G F+ I L++N + ++ N G +N ++ ++ F G
Sbjct: 144 IERNSFVGLSFESVILWLNKNGIQEIHNSAFNG-TQLDELNLSDNNNLEELPNDVFHG-- 200
Query: 223 PPLPSNSSFLNLSKNRFSRSISLCSISG-SKLTYIDLSSNLLSGKLPDCWWMFDSLVILD 281
S L++S+ R S+ + KL + KLP +L+
Sbjct: 201 ---ASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNL---KKLPT-LEKLVALMEAS 252
Query: 282 LGNNS 286
L S
Sbjct: 253 LTYPS 257
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 8e-06
Identities = 21/100 (21%), Positives = 43/100 (43%), Gaps = 9/100 (9%)
Query: 106 LNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRL---YLSDNLLN 162
L+L K+ +I+N+ + + +++ N I L GF ++RL +++N +
Sbjct: 24 LDLRGYKIPVIENLGATL--DQFDAIDFSDNE----IRKLDGFPLLRRLKTLLVNNNRIC 77
Query: 163 GTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSS 202
+ L L+ NSL +L ++ L L+
Sbjct: 78 RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTY 117
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 2e-05
Identities = 22/100 (22%), Positives = 38/100 (38%), Gaps = 7/100 (7%)
Query: 106 LNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRL---YLSDNLLN 162
L L +++ + LE L + + + +L LSDN ++
Sbjct: 22 LVLDNSRSNEGKLEGLTDEFEELEFLSTINVG----LTSIANLPKLNKLKKLELSDNRVS 77
Query: 163 GTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSS 202
G + + L LS N + DL+ I+ KL +L S
Sbjct: 78 GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKS 117
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 1e-04
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 430 IKSLELSSNKLNGAVPEEIMD-LVGLVALNLSRNHLTGQNSPKIG---QLKSLDFLDLSR 485
+K L L +++ N E + D L L+ LT I +L L L+LS
Sbjct: 19 VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-----SIANLPKLNKLKKLELSD 73
Query: 486 NQLVGGIPSSLSPLSVLSVMDLSYNNLS 513
N++ GG+ L+ ++LS N +
Sbjct: 74 NRVSGGLEVLAEKCPNLTHLNLSGNKIK 101
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 3e-05
Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 1/99 (1%)
Query: 104 NMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNG 163
L L + K + +LE L L + +L +K+L LS+N + G
Sbjct: 27 RELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-VSNLPKLPKLKKLELSENRIFG 85
Query: 164 TINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSS 202
++ ++ L LS N L D++ ++ KL L S
Sbjct: 86 GLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKS 124
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 1e-04
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 430 IKSLELSSNKLNGAVPEEIMD-LVGLVALNLSRNHLTG-QNSPKIGQLKSLDFLDLSRNQ 487
++ L L + K N E + V L L+L L N PK L L L+LS N+
Sbjct: 26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPK---LPKLKKLELSENR 82
Query: 488 LVGGIPSSLSPLSVLSVMDLSYNNLS 513
+ GG+ L L+ ++LS N L
Sbjct: 83 IFGGLDMLAEKLPNLTHLNLSGNKLK 108
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 3e-05
Identities = 20/107 (18%), Positives = 48/107 (44%), Gaps = 11/107 (10%)
Query: 61 VSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELE-----GGIPKFFGNMLNLSDNKLAI 115
V + ++ + + + +HL+L N +E G+ +L+L N +
Sbjct: 28 VELHGMIPPIEK-MDATLSTLKACKHLALSTNNIEKISSLSGMENL--RILSLGRNLIKK 84
Query: 116 IQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLN 162
I+N+ + + ++LE L + N + + +++ LY+S+N +
Sbjct: 85 IENLDA--VADTLEELWISYNQIAS-LSGIEKLVNLRVLYMSNNKIT 128
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 3e-05
Identities = 29/101 (28%), Positives = 40/101 (39%), Gaps = 12/101 (11%)
Query: 431 KSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLV- 489
+ L+L S L L L LNL N L ++ L L L L+ NQL
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 490 --GGIPSSLSPLSVLSVMDLSYNNLSGKIPTG-----TQLQ 523
G+ L+ L L L N L +P+G T+L+
Sbjct: 98 LPLGVFDHLTQLDKL---YLGGNQLK-SLPSGVFDRLTKLK 134
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 6e-05
Identities = 61/341 (17%), Positives = 109/341 (31%), Gaps = 83/341 (24%)
Query: 13 SLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYL-----RPLSNI---SSNFVSID 64
++ L+++ L++ + W +++ L + + C L + +S+ + ++
Sbjct: 4 DIQSLDIQCEELSD-ARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62
Query: 65 LSFNQLQGS--------IPDSSQHMVYLEHLSLMFNELEGGIPKFFGNM---------LN 107
L N+L + S ++ LSL L G + L+
Sbjct: 63 LRSNELGDVGVHCVLQGLQTPSCK---IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELH 119
Query: 108 LSDNKL--AIIQNMSSGCLKN--SLESLHLEVNHFTGP-----IPDLGGFSSMKRLYLSD 158
LSDN L A +Q + G L LE L LE + L K L +S+
Sbjct: 120 LSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN 179
Query: 159 NLLNGTINKSIGQIFK-----LEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGI-- 211
N +N + + Q K LE L +T DL S +
Sbjct: 180 NDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDN-------CRDLCGIV-ASKASLRE 231
Query: 212 -DISSNHF---------EGPIPPLPSNSSFLNLSKNRFS----RSISLCSISGSKLTYID 257
+ SN G + P + L + + + + + L +
Sbjct: 232 LALGSNKLGDVGMAELCPGLLHPSSRLRT-LWIWECGITAKGCGDLCRVLRAKESLKELS 290
Query: 258 LSSNLLSG----------KLPDCWWMFDSLVILDLGNNSFS 288
L+ N L P C L L + + SF+
Sbjct: 291 LAGNELGDEGARLLCETLLEPGC-----QLESLWVKSCSFT 326
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 7e-05
Identities = 34/102 (33%), Positives = 44/102 (43%), Gaps = 18/102 (17%)
Query: 433 LELSSNKLNGAVPEEIMD-LVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGG 491
L L+ NKL +P I L L L ++ N L QL +L L L RNQL
Sbjct: 66 LYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQL--- 121
Query: 492 IPSSLSP-----LSVLSVMDLSYNNLSGKIPTG-----TQLQ 523
SL P L+ L+ + L YN L +P G T L+
Sbjct: 122 --KSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLK 160
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 6e-04
Identities = 46/167 (27%), Positives = 68/167 (40%), Gaps = 27/167 (16%)
Query: 10 RLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNISSN-FVS------ 62
RL LR L L +N L G LK L + L + F
Sbjct: 59 RLTKLRLLYLNDNKLQTLPA-----GIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAE 113
Query: 63 IDLSFNQLQGSIPDSS-QHMVYLEHLSLMFNELEGGIPK--FFG----NMLNLSDNKLAI 115
+ L NQL+ S+P + L +LSL +NEL+ +PK F L L +N+L
Sbjct: 114 LRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKR 171
Query: 116 IQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGF---SSMKRLYLSDN 159
+ + L L++L L+ N +P+ G F +K L L +N
Sbjct: 172 VPEGAFDKLTE-LKTLKLDNNQLKR-VPE-GAFDSLEKLKMLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 7e-04
Identities = 34/132 (25%), Positives = 50/132 (37%), Gaps = 15/132 (11%)
Query: 42 TLTSHSCYLRPL----SNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGG 97
S C + L SNI ++ +DL N+L + + L L L N+L+
Sbjct: 17 NKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTL 76
Query: 98 IPKFFGNM-----LNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSM- 151
F + L ++DNKL + L N L L L+ N +P F S+
Sbjct: 77 PAGIFKELKNLETLWVTDNKLQALPIGVFDQLVN-LAELRLDRNQLKS-LPP-RVFDSLT 133
Query: 152 --KRLYLSDNLL 161
L L N L
Sbjct: 134 KLTYLSLGYNEL 145
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 3e-04
Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 2/91 (2%)
Query: 431 KSLELSSNKLNGAVPEEIMD-LVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLV 489
L L++N+ I L L +N S N +T ++ + L+ N+L
Sbjct: 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94
Query: 490 GGIPSSLSPLSVLSVMDLSYNNLSGKIPTGT 520
L L + L N ++ + +
Sbjct: 95 NVQHKMFKGLESLKTLMLRSNRIT-CVGNDS 124
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 5e-04
Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 1/90 (1%)
Query: 431 KSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVG 490
+ L N + P L ++LS N ++ L+SL+ L L N++
Sbjct: 35 TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE 94
Query: 491 GIPSSLSPLSVLSVMDLSYNNLSGKIPTGT 520
S L L ++ L+ N ++ +
Sbjct: 95 LPKSLFEGLFSLQLLLLNANKIN-CLRVDA 123
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 574 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 100.0 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.98 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.98 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.98 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.97 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.97 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.97 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.97 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.97 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.96 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.96 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.96 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.96 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.96 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.95 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.95 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.95 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.94 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.94 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.94 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.94 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.94 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.93 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.93 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.93 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.93 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.93 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.93 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.93 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.93 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.93 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.92 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.92 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.92 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.91 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.9 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.9 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.9 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.89 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.89 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.88 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.88 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.88 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.87 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.87 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.87 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.87 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.86 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.86 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.86 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.86 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.85 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.84 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.84 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.84 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.82 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.82 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.81 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.81 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.81 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.8 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.8 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.8 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.78 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.77 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.76 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.76 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.76 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.76 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.75 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.75 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.74 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.74 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.74 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.74 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.72 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.71 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.7 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.7 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.69 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.68 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.66 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.65 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.65 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.65 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.63 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.63 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.63 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.61 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.6 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.6 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.59 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.58 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.58 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.55 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.54 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.52 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.51 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.5 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.48 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.47 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.45 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.44 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.4 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.38 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.36 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.31 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.28 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.22 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 99.12 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 99.08 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.83 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.77 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.71 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.57 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.34 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.22 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.08 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 97.93 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.91 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.83 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.5 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 97.1 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-60 Score=524.27 Aligned_cols=542 Identities=28% Similarity=0.363 Sum_probs=412.6
Q ss_pred hhcCCCCCcEEECCCCCCCCC-Cc-------------------------hhhhcCCCCCCcEEEccCCCCCCCC--CcCC
Q 041121 7 RSLRLHSLRYLNLEENNLANC-SD-------------------------WFQVIGKLHSLKTLTSHSCYLRPLS--NISS 58 (574)
Q Consensus 7 ~l~~l~~L~~L~Ls~n~i~~~-~~-------------------------~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~ 58 (574)
.++++++|++|++++|.++.. +. ....+.++++|++|++++|.+++.. .-.+
T Consensus 121 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~ 200 (768)
T 3rgz_A 121 SLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV 200 (768)
T ss_dssp GGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCT
T ss_pred HHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCC
Confidence 666777777777777666544 22 0001344445555555555444331 2236
Q ss_pred cccEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccCchhhhhccc-----CCCCCcccc-ccccccccccccCcEEE
Q 041121 59 NFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNML-----NLSDNKLAI-IQNMSSGCLKNSLESLH 132 (574)
Q Consensus 59 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----~L~~n~l~~-l~~~~~~~l~~~L~~L~ 132 (574)
+|++|++++|.+++.+|. +..+++|++|++++|.+++..|..|..+. ++++|.+++ +|. . .+++ |++|+
T Consensus 201 ~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~--~l~~-L~~L~ 275 (768)
T 3rgz_A 201 NLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP-L--PLKS-LQYLS 275 (768)
T ss_dssp TCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCC-C--CCTT-CCEEE
T ss_pred cCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCc-c--ccCC-CCEEE
Confidence 888888988888877776 88999999999999999888888888765 777888877 544 2 6777 99999
Q ss_pred ccCCcccccCCC-CCC-CCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCe
Q 041121 133 LEVNHFTGPIPD-LGG-FSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPG 210 (574)
Q Consensus 133 L~~n~l~~~~~~-l~~-l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~ 210 (574)
+++|++++..+. +.. +++|++|++++|++++..|..|..+++|++|++++|.++ +.+|...+..+++|++
T Consensus 276 L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~--------~~ip~~~l~~l~~L~~ 347 (768)
T 3rgz_A 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS--------GELPMDTLLKMRGLKV 347 (768)
T ss_dssp CCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEE--------EECCHHHHTTCTTCCE
T ss_pred CcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCccc--------CcCCHHHHhcCCCCCE
Confidence 999999877666 555 499999999999999889999999999999999998764 3555544677888888
Q ss_pred EeccCCcccCCCCCC---C-CCCcEEEcCCCcccccccccccC--CCCccEEECCCCCCCCCCCcchhcCCCCcEEEccC
Q 041121 211 IDISSNHFEGPIPPL---P-SNSSFLNLSKNRFSRSISLCSIS--GSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGN 284 (574)
Q Consensus 211 L~l~~n~l~~~~~~~---~-~~L~~L~L~~n~i~~~~~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 284 (574)
|++++|.+++.+|.. + .+|+.|++++|.+.+..+..+.. +++|++|++++|.+++..|..+..+++|+.|++++
T Consensus 348 L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 427 (768)
T 3rgz_A 348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 427 (768)
T ss_dssp EECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCS
T ss_pred EeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcC
Confidence 888888888777765 3 37888888888887766655544 67788888888888877788888888888888888
Q ss_pred cccccCCCcccccccCcccccccc---------ccccCccceeeec---ccccccccccc-----ceEEecCceeccCCC
Q 041121 285 NSFSGRIPDSMGFLQNIQTQFTQQ---------QFNRRTVFIVWEL---LTTQTFESWEE-----RFVRLKSNKFHGKTP 347 (574)
Q Consensus 285 N~l~~~~~~~~~~l~~L~~l~~~~---------~~~~~~~l~~l~~---~~~~~~~~~~~-----~~l~L~~n~~~~~~~ 347 (574)
|.+++..|..+..+++|+.++... .+..++.++.+++ ...+.+|.+.. +.+++++|++.+..|
T Consensus 428 N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 507 (768)
T 3rgz_A 428 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 507 (768)
T ss_dssp SEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred CcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCC
Confidence 888888888888888888777332 3455667777777 44455555543 889999999998899
Q ss_pred hhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccc-cccccccCCCcccccccc-----------------
Q 041121 348 FQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIK-VYYYTFVGPPYVHHYSFQ----------------- 409 (574)
Q Consensus 348 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~-~~~~~~~~~~~~~~~~~~----------------- 409 (574)
..+..+++|++|++++|++++.+|..+..+++|+.+++++|.+. .++..+..........+.
T Consensus 508 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (768)
T 3rgz_A 508 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC 587 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTC
T ss_pred hHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccc
Confidence 99999999999999999998888988999999999999888765 222222111111100000
Q ss_pred --------------------------CcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCc
Q 041121 410 --------------------------DKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNH 463 (574)
Q Consensus 410 --------------------------~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 463 (574)
......+.+..+..+..+++|+.|||++|.+++.+|..|+.+++|++|+|++|+
T Consensus 588 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~ 667 (768)
T 3rgz_A 588 HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHND 667 (768)
T ss_dssp CSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSC
T ss_pred cccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCc
Confidence 000112334455567788999999999999999999999999999999999999
Q ss_pred CcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcccCCCcchhcccCcccccCCCCCCCCCCCC
Q 041121 464 LTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTGTQLQSFNGSVYAGNPELCGLPLPN 543 (574)
Q Consensus 464 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~l~~Np~~c~~~l~~ 543 (574)
+++.+|..|+++++|++|||++|++++.+|..+..+++|++|++++|+++|.+|...++.++....+.|||++||.|+.
T Consensus 668 l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~- 746 (768)
T 3rgz_A 668 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP- 746 (768)
T ss_dssp CCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-
T ss_pred cCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 041121 544 KCRDEESAPGPGMTEGRDD 562 (574)
Q Consensus 544 ~c~~~~~~~~~~~~~~~~~ 562 (574)
.|..+.+..|+++.+.+..
T Consensus 747 ~C~~~~~~~~~~~~~~~~~ 765 (768)
T 3rgz_A 747 RCDPSNADGYAHHQRSHHH 765 (768)
T ss_dssp CCCSCC-------------
T ss_pred CCCCCccCCCCCCCCcccc
Confidence 8998888888887666543
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-55 Score=479.84 Aligned_cols=526 Identities=26% Similarity=0.325 Sum_probs=368.6
Q ss_pred hhhhhhcCCCCCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCC------CCcCCcccEEEccCCcCCCCCCc
Q 041121 3 KLLMRSLRLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPL------SNISSNFVSIDLSFNQLQGSIPD 76 (574)
Q Consensus 3 ~l~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~~L~~L~Ls~n~i~~~~~~ 76 (574)
.++.++.+++.|+.++++.+.+...+. .|..+++|++|+|++|.+++. ..-.++|++|++++|.+++..|.
T Consensus 68 ~l~~~l~~L~~L~~l~~~~~~~~~l~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 144 (768)
T 3rgz_A 68 AVSSSLLSLTGLESLFLSNSHINGSVS---GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKV 144 (768)
T ss_dssp HHHHHTTTCTTCCEEECTTSCEEECCC---CCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSC
T ss_pred ccChhHhccCcccccCCcCCCcCCCch---hhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCH
Confidence 378889999999999999998876666 789999999999999998753 12237999999999999877777
Q ss_pred cc-cCCCCCCEEEccCCcCccCchhh---hhccc-----CCCCCccccccccccccccccCcEEEccCCcccccCCCCCC
Q 041121 77 SS-QHMVYLEHLSLMFNELEGGIPKF---FGNML-----NLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGG 147 (574)
Q Consensus 77 ~~-~~l~~L~~L~L~~n~l~~~~~~~---~~~l~-----~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~l~~ 147 (574)
.+ .++++|++|++++|.+++..|.. +.++. ++++|.+++... +..+++ |++|++++|++++.++.+.+
T Consensus 145 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~-L~~L~Ls~n~l~~~~~~l~~ 221 (768)
T 3rgz_A 145 SGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVN-LEFLDVSSNNFSTGIPFLGD 221 (768)
T ss_dssp CSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTT-CCEEECCSSCCCSCCCBCTT
T ss_pred HHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCc-CCEEECcCCcCCCCCccccc
Confidence 66 88999999999999999877766 44443 778888887443 367888 99999999999987777999
Q ss_pred CCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCc--------------ccCccccccCCchhhcCCCCCCeEec
Q 041121 148 FSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTD--------------LANIQIKGKLPDLSSRFGTSNPGIDI 213 (574)
Q Consensus 148 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~--------------l~~~~~~~~lp~~~~~~~~~L~~L~l 213 (574)
+++|++|++++|.+++..|..|..+++|++|++++|.++. +..+.+.+.+|......+++|++|++
T Consensus 222 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~L 301 (768)
T 3rgz_A 222 CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDL 301 (768)
T ss_dssp CCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEEC
T ss_pred CCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEEC
Confidence 9999999999999998889999999999999999998762 11222223333332222344444444
Q ss_pred cCCcccCCCCCC---CCCCcEEEcCCCccccccc-ccccCCCCccEEECCCCCCCCCCCcchhcCC-CCcEEEccCcccc
Q 041121 214 SSNHFEGPIPPL---PSNSSFLNLSKNRFSRSIS-LCSISGSKLTYIDLSSNLLSGKLPDCWWMFD-SLVILDLGNNSFS 288 (574)
Q Consensus 214 ~~n~l~~~~~~~---~~~L~~L~L~~n~i~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~ 288 (574)
++|.+++.+|.. +++|++|++++|.+.+..+ ..+..+++|++|++++|.+++..|..+..++ +|+.|++++|.++
T Consensus 302 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~ 381 (768)
T 3rgz_A 302 SGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 381 (768)
T ss_dssp CSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEE
T ss_pred cCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcC
Confidence 444444444332 3444445555554442222 2244444555555555554444444444444 4555555555544
Q ss_pred cCCCccccc--ccCcccccccc---------ccccCccceeeec---ccccccccccc-----ceEEecCceeccCCChh
Q 041121 289 GRIPDSMGF--LQNIQTQFTQQ---------QFNRRTVFIVWEL---LTTQTFESWEE-----RFVRLKSNKFHGKTPFQ 349 (574)
Q Consensus 289 ~~~~~~~~~--l~~L~~l~~~~---------~~~~~~~l~~l~~---~~~~~~~~~~~-----~~l~L~~n~~~~~~~~~ 349 (574)
+..|..+.. +++|+.++... .+..++.++.+++ ...+.+|.... +.+++++|.+.+..|..
T Consensus 382 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 461 (768)
T 3rgz_A 382 GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 461 (768)
T ss_dssp EECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred CCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHH
Confidence 444444333 44444444211 3444555555555 33333443332 56666666666666666
Q ss_pred hcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccc-cccccccCCCccccccccCcccccccCCCcccccccC
Q 041121 350 LCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIK-VYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLG 428 (574)
Q Consensus 350 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 428 (574)
+..+++|++|++++|++++..|..+.++++|+.+++++|.+. ..+..+...+.+..+.+.++.+. +..+..+..++
T Consensus 462 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~---~~~p~~l~~l~ 538 (768)
T 3rgz_A 462 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS---GNIPAELGDCR 538 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE---EECCGGGGGCT
T ss_pred HcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCccc---CcCCHHHcCCC
Confidence 666666777777777766666666666777777777766665 34444445555566665555432 34456677888
Q ss_pred cccEEEccCCcCCCCCcHhhh-----------------------------------------------------------
Q 041121 429 LIKSLELSSNKLNGAVPEEIM----------------------------------------------------------- 449 (574)
Q Consensus 429 ~L~~L~Ls~n~l~~~~~~~~~----------------------------------------------------------- 449 (574)
+|+.|++++|.+++.+|..+.
T Consensus 539 ~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 618 (768)
T 3rgz_A 539 SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR 618 (768)
T ss_dssp TCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSC
T ss_pred CCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccc
Confidence 899999999988777765442
Q ss_pred -----------hcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcccCCC
Q 041121 450 -----------DLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPT 518 (574)
Q Consensus 450 -----------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~ 518 (574)
.+++|++|+|++|++++.+|..|++++.|+.|+|++|++++.+|..|..+++|+.|||++|+++|.+|.
T Consensus 619 ~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~ 698 (768)
T 3rgz_A 619 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698 (768)
T ss_dssp EEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCG
T ss_pred eecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCCh
Confidence 356789999999999999999999999999999999999999999999999999999999999999998
Q ss_pred c-chhcccCcccccCCCCCC
Q 041121 519 G-TQLQSFNGSVYAGNPELC 537 (574)
Q Consensus 519 ~-~~~~~l~~~~l~~Np~~c 537 (574)
. ..++.++.+++++|+...
T Consensus 699 ~l~~l~~L~~L~ls~N~l~g 718 (768)
T 3rgz_A 699 AMSALTMLTEIDLSNNNLSG 718 (768)
T ss_dssp GGGGCCCCSEEECCSSEEEE
T ss_pred HHhCCCCCCEEECcCCcccc
Confidence 7 568889999999997554
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-52 Score=452.94 Aligned_cols=488 Identities=18% Similarity=0.143 Sum_probs=314.9
Q ss_pred hhcCCCCCcEEECCCCCCCCC-CchhhhcCCCCCCcEEEccCCCCCCCCC----cCCcccEEEccCCcCCCCCCccccCC
Q 041121 7 RSLRLHSLRYLNLEENNLANC-SDWFQVIGKLHSLKTLTSHSCYLRPLSN----ISSNFVSIDLSFNQLQGSIPDSSQHM 81 (574)
Q Consensus 7 ~l~~l~~L~~L~Ls~n~i~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~L~~L~Ls~n~i~~~~~~~~~~l 81 (574)
.|.++++|++|++++|.++.+ +. +|.++++|++|++++|+++.+.. -.++|++|++++|++++..+..|..+
T Consensus 44 ~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 120 (680)
T 1ziw_A 44 NFTRYSQLTSLDVGFNTISKLEPE---LCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120 (680)
T ss_dssp GGGGGTTCSEEECCSSCCCCCCTT---HHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTC
T ss_pred HHhCCCcCcEEECCCCccCccCHH---HHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHcccc
Confidence 355555555555555555554 33 44555555555555555544421 12445555555555544444444445
Q ss_pred CCCCEEEccCCcCccCchhhhhccc-------------------------------CCCCCccccccccccccc------
Q 041121 82 VYLEHLSLMFNELEGGIPKFFGNML-------------------------------NLSDNKLAIIQNMSSGCL------ 124 (574)
Q Consensus 82 ~~L~~L~L~~n~l~~~~~~~~~~l~-------------------------------~L~~n~l~~l~~~~~~~l------ 124 (574)
++|++|++++|.+++..|..+..+. ++++|.+++++...+..+
T Consensus 121 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 200 (680)
T 1ziw_A 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGL 200 (680)
T ss_dssp TTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEE
T ss_pred CCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhh
Confidence 5555555555444444333333322 445555554433333322
Q ss_pred ---------------------cccCcEEEccCCcccccCCC-CCCCCC--CCEEEccCcccccccchhhhccCCCCEEEc
Q 041121 125 ---------------------KNSLESLHLEVNHFTGPIPD-LGGFSS--MKRLYLSDNLLNGTINKSIGQIFKLEITCL 180 (574)
Q Consensus 125 ---------------------~~~L~~L~L~~n~l~~~~~~-l~~l~~--L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 180 (574)
+. |+.|++++|.+.+..+. |.+++. |++|++++|++++..+..|..+++|++|++
T Consensus 201 ~l~~~~l~~~~~~~~~~~l~~~~-L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 279 (680)
T 1ziw_A 201 FLNNVQLGPSLTEKLCLELANTS-IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFL 279 (680)
T ss_dssp ECTTCCCHHHHHHHHHHHHTTSC-CCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred hccccccChhhHHHHHHHhhhcc-ccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeC
Confidence 22 44555555555544444 554433 777777777776666666777777777777
Q ss_pred cCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCC-----CC-------CCCCCCcEEEcCCCccccccccccc
Q 041121 181 SQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGP-----IP-------PLPSNSSFLNLSKNRFSRSISLCSI 248 (574)
Q Consensus 181 s~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~-----~~-------~~~~~L~~L~L~~n~i~~~~~~~~~ 248 (574)
++|.++.+. |.. +..+++|+.|++++|...+. +| ..+++|++|++++|.+.++.+..+.
T Consensus 280 ~~n~l~~~~--------~~~-~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 350 (680)
T 1ziw_A 280 EYNNIQHLF--------SHS-LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFT 350 (680)
T ss_dssp CSCCBSEEC--------TTT-TTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTT
T ss_pred CCCccCccC--------hhh-hcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhc
Confidence 777665432 222 45566777777766544321 11 1257788888888888887777777
Q ss_pred CCCCccEEECCCCCCCC--CCCcchhcC--CCCcEEEccCcccccCCCcccccccCccccccccccccCccceeeecccc
Q 041121 249 SGSKLTYIDLSSNLLSG--KLPDCWWMF--DSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTT 324 (574)
Q Consensus 249 ~~~~L~~L~L~~n~l~~--~~~~~~~~l--~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~ 324 (574)
.+++|++|++++|.+.. .....|..+ ++|+.|++++|.+++..|..+..+++|
T Consensus 351 ~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L----------------------- 407 (680)
T 1ziw_A 351 GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHL----------------------- 407 (680)
T ss_dssp TCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTC-----------------------
T ss_pred cccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCC-----------------------
Confidence 88888888888876432 223344433 478888888888887777777777777
Q ss_pred ccccccccceEEecCceeccCCC-hhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccc---cccccccCC
Q 041121 325 QTFESWEERFVRLKSNKFHGKTP-FQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIK---VYYYTFVGP 400 (574)
Q Consensus 325 ~~~~~~~~~~l~L~~n~~~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~---~~~~~~~~~ 400 (574)
+.+++++|.+.+..+ ..+..+++|++|++++|++.+..+..|..++.|+.+++++|.+. ..+..+...
T Consensus 408 --------~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l 479 (680)
T 1ziw_A 408 --------EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL 479 (680)
T ss_dssp --------CEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTC
T ss_pred --------CEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccC
Confidence 666666666655333 45666666666666666666566666666666666666666553 223334444
Q ss_pred CccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCc--------HhhhhcCCCCEEeCCCCcCcccCCccc
Q 041121 401 PYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVP--------EEIMDLVGLVALNLSRNHLTGQNSPKI 472 (574)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 472 (574)
..+..+.+.++.+. +..+..+..+++|++|++++|.+++..+ ..|.++++|++|+|++|+++.+.+..|
T Consensus 480 ~~L~~L~Ls~N~l~---~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~ 556 (680)
T 1ziw_A 480 RNLTILDLSNNNIA---NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF 556 (680)
T ss_dssp TTCCEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCCCEEECCCCCCC---cCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHc
Confidence 45555555554433 3445567789999999999999975422 237899999999999999997777789
Q ss_pred cCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcccCCCcc--hhcccCcccccCCCCCCCCCC
Q 041121 473 GQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTGT--QLQSFNGSVYAGNPELCGLPL 541 (574)
Q Consensus 473 ~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~--~~~~l~~~~l~~Np~~c~~~l 541 (574)
.++++|+.|++++|+++++.+..|..+++|+.|++++|+|++..|... .++.++.+++++|||.|+|++
T Consensus 557 ~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 557 KDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred ccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 999999999999999998888889999999999999999996555543 578999999999999999985
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-52 Score=449.63 Aligned_cols=478 Identities=19% Similarity=0.149 Sum_probs=343.6
Q ss_pred hhhhhhcCCCCCcEEECCCCCCCCC-CchhhhcCCCCCCcEEEccCCCCCCC----CCcCCcccEEEccCCcCCCCCCcc
Q 041121 3 KLLMRSLRLHSLRYLNLEENNLANC-SDWFQVIGKLHSLKTLTSHSCYLRPL----SNISSNFVSIDLSFNQLQGSIPDS 77 (574)
Q Consensus 3 ~l~~~l~~l~~L~~L~Ls~n~i~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~L~~L~Ls~n~i~~~~~~~ 77 (574)
.+|..+.. .+++|++++|.|+.+ +. +|.++++|++|++++|+++.+ ..-.++|++|++++|++++..|..
T Consensus 26 ~iP~~l~~--~l~~L~Ls~n~i~~~~~~---~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 100 (606)
T 3t6q_A 26 EIPGTLPN--STECLEFSFNVLPTIQNT---TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETA 100 (606)
T ss_dssp SCCTTSCT--TCCEEECTTCCCSEECTT---TSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTT
T ss_pred cCcCCCCC--cCcEEEccCCccCcCChh---HhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhh
Confidence 34555543 678888888888877 55 788888888888888887765 223478888888888888777778
Q ss_pred ccCCCCCCEEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccccC-CCCCCCCCCCEEEc
Q 041121 78 SQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPI-PDLGGFSSMKRLYL 156 (574)
Q Consensus 78 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~-~~l~~l~~L~~L~L 156 (574)
|..+++|++|++++|.+++..+. .+..+++ |++|++++|++++.. +.+.++++|++|++
T Consensus 101 ~~~l~~L~~L~L~~n~i~~l~~~-------------------~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 160 (606)
T 3t6q_A 101 LSGPKALKHLFFIQTGISSIDFI-------------------PLHNQKT-LESLYLGSNHISSIKLPKGFPTEKLKVLDF 160 (606)
T ss_dssp TSSCTTCCEEECTTSCCSCGGGS-------------------CCTTCTT-CCEEECCSSCCCCCCCCTTCCCTTCCEEEC
T ss_pred hcccccccEeeccccCcccCCcc-------------------hhccCCc-ccEEECCCCcccccCcccccCCcccCEEEc
Confidence 88888888888888887754444 4445555 666666666666533 33444666666666
Q ss_pred cCcccccccchhhhccCCCC--EEEccCCCCCcccCccccc---------------------------------------
Q 041121 157 SDNLLNGTINKSIGQIFKLE--ITCLSQNSLTDLANIQIKG--------------------------------------- 195 (574)
Q Consensus 157 ~~n~i~~~~~~~~~~l~~L~--~L~Ls~N~l~~l~~~~~~~--------------------------------------- 195 (574)
++|.+++..+..|..+++|+ .|++++|.++.+....+..
T Consensus 161 ~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~ 240 (606)
T 3t6q_A 161 QNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDD 240 (606)
T ss_dssp CSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCC
T ss_pred ccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccc
Confidence 66666655566666666666 5666666665444332211
Q ss_pred -cCCchhhcCC--CCCCeEeccCCcccCCCCCC---CCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCc
Q 041121 196 -KLPDLSSRFG--TSNPGIDISSNHFEGPIPPL---PSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPD 269 (574)
Q Consensus 196 -~lp~~~~~~~--~~L~~L~l~~n~l~~~~~~~---~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 269 (574)
.++...+..+ .+++.+++++|.+++..+.. +++|++|++++|.++.++. .+..+++|++|++++|.+++..|.
T Consensus 241 ~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~-~l~~l~~L~~L~l~~n~l~~~~~~ 319 (606)
T 3t6q_A 241 EDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPS-GLVGLSTLKKLVLSANKFENLCQI 319 (606)
T ss_dssp CCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCS-SCCSCTTCCEEECTTCCCSBGGGG
T ss_pred cccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCCh-hhcccccCCEEECccCCcCcCchh
Confidence 0111111111 16778888888888766653 6788888888888885543 566788888888888888877777
Q ss_pred chhcCCCCcEEEccCcccccCCCc-ccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCC--
Q 041121 270 CWWMFDSLVILDLGNNSFSGRIPD-SMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKT-- 346 (574)
Q Consensus 270 ~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~-- 346 (574)
.+..+++|++|++++|.+.+..+. .+..+++| +.+++++|.+.+..
T Consensus 320 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L-------------------------------~~L~l~~n~l~~~~~~ 368 (606)
T 3t6q_A 320 SASNFPSLTHLSIKGNTKRLELGTGCLENLENL-------------------------------RELDLSHDDIETSDCC 368 (606)
T ss_dssp CGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC-------------------------------CEEECCSSCCCEEEES
T ss_pred hhhccCcCCEEECCCCCcccccchhhhhccCcC-------------------------------CEEECCCCccccccCc
Confidence 888888888888888888755544 47777777 66666666666544
Q ss_pred ChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccc--cccCCCccccccccCcccccccCCCcccc
Q 041121 347 PFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYY--TFVGPPYVHHYSFQDKVMPTWKGSGREYR 424 (574)
Q Consensus 347 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (574)
+..+..+++|++|++++|++++..+..|..+++|+.+++++|.+..... .+...+.+..+.+.++.+ .+..+..+
T Consensus 369 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~ 445 (606)
T 3t6q_A 369 NLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL---DISSEQLF 445 (606)
T ss_dssp TTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCC---BTTCTTTT
T ss_pred chhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCcc---CCcCHHHH
Confidence 5556666666666666666666666666666666666666666543321 133444555555554433 23345567
Q ss_pred cccCcccEEEccCCcCCCC---CcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCC
Q 041121 425 STLGLIKSLELSSNKLNGA---VPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSV 501 (574)
Q Consensus 425 ~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~ 501 (574)
..+++|++|++++|.+++. .+..+..+++|++|++++|++++..|..|.++++|++|++++|++++..|+.|..++.
T Consensus 446 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 525 (606)
T 3t6q_A 446 DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKG 525 (606)
T ss_dssp TTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCS
T ss_pred hCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCcccc
Confidence 7899999999999999752 3367899999999999999999999999999999999999999999999999999999
Q ss_pred CCEEeccCCcCcccCCCc-chhcccCcccccCCCCCCCCCC
Q 041121 502 LSVMDLSYNNLSGKIPTG-TQLQSFNGSVYAGNPELCGLPL 541 (574)
Q Consensus 502 L~~L~Ls~N~l~~~~p~~-~~~~~l~~~~l~~Np~~c~~~l 541 (574)
| .|++++|++++..|.. ..++.++.+++++|||.|+|+.
T Consensus 526 L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 526 I-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp C-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred c-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 9 9999999999766664 5688999999999999999984
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-50 Score=432.59 Aligned_cols=459 Identities=18% Similarity=0.114 Sum_probs=295.9
Q ss_pred hhhhhcCCCCCcEEECCCCCCCCC-CchhhhcCCCCCCcEEEccCCCCCCC----CCcCCcccEEEccCCcCCCCCCccc
Q 041121 4 LLMRSLRLHSLRYLNLEENNLANC-SDWFQVIGKLHSLKTLTSHSCYLRPL----SNISSNFVSIDLSFNQLQGSIPDSS 78 (574)
Q Consensus 4 l~~~l~~l~~L~~L~Ls~n~i~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~L~~L~Ls~n~i~~~~~~~~ 78 (574)
+|..+. ++|++|++++|.++.+ +. +|.++++|++|++++|+++.+ ..-.++|++|++++|.+++..|..|
T Consensus 26 ip~~~~--~~l~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~ 100 (606)
T 3vq2_A 26 VPDDIP--SSTKNIDLSFNPLKILKSY---SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSF 100 (606)
T ss_dssp CCTTSC--TTCCEEECTTSCCCEECTT---TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSS
T ss_pred CCCCCC--CCcCEEECCCCCcCEeChh---hccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhc
Confidence 444443 5778888888887777 44 677788888888888877766 1223678888888888877777778
Q ss_pred cCCCCCCEEEccCCcCccCchhhhhccc-----CCCCCcccc--ccccccccccccCcEEEccCCcccccCCC-CCCCCC
Q 041121 79 QHMVYLEHLSLMFNELEGGIPKFFGNML-----NLSDNKLAI--IQNMSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSS 150 (574)
Q Consensus 79 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----~L~~n~l~~--l~~~~~~~l~~~L~~L~L~~n~l~~~~~~-l~~l~~ 150 (574)
.++++|++|++++|.+.+..+..|+++. ++++|.+++ +|. .+.++++ |++|++++|++++..+. +..+++
T Consensus 101 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~-~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~l~~ 178 (606)
T 3vq2_A 101 SGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA-YFSNLTN-LVHVDLSYNYIQTITVNDLQFLRE 178 (606)
T ss_dssp TTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCG-GGGTCTT-CCEEECCSSCCCEECTTTTHHHHH
T ss_pred CCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechH-hHhhcCC-CCEEEccCCcceecChhhhhhhhc
Confidence 8888888888888877765555565554 566676664 455 6777776 77777777777766554 555544
Q ss_pred CC----EEEccCcccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCC-------------------
Q 041121 151 MK----RLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTS------------------- 207 (574)
Q Consensus 151 L~----~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~------------------- 207 (574)
|+ +|++++|.+++..+..|... +|++|++++|.++.- ..|.. +..++.
T Consensus 179 L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~-------~~~~~-~~~l~~L~~l~l~~~~~~~~~~l~~ 249 (606)
T 3vq2_A 179 NPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSN-------IMKTC-LQNLAGLHVHRLILGEFKDERNLEI 249 (606)
T ss_dssp CTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHH-------HHHHH-HHTTTTCEEEEEEEECCTTSCCCSC
T ss_pred cccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchh-------HHHHH-hccccccccccccccccccCCcccc
Confidence 43 67777777765555555444 677777777665410 00000 111111
Q ss_pred -------------CCeEec-cCCcccCCCCCC--CCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcch
Q 041121 208 -------------NPGIDI-SSNHFEGPIPPL--PSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCW 271 (574)
Q Consensus 208 -------------L~~L~l-~~n~l~~~~~~~--~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 271 (574)
++.+++ ..+.+.+..|.. +++|+.|++++|.+..++ .+..+++|++|++++|.+. .+|. +
T Consensus 250 ~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~--~l~~~~~L~~L~l~~n~l~-~lp~-~ 325 (606)
T 3vq2_A 250 FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE--DVPKHFKWQSLSIIRCQLK-QFPT-L 325 (606)
T ss_dssp CCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC--CCCTTCCCSEEEEESCCCS-SCCC-C
T ss_pred cChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhh--hccccccCCEEEcccccCc-cccc-C
Confidence 111122 222333322222 344555555555554433 3334455555555555552 3332 2
Q ss_pred hcCCCCcEEEccCc----------------------ccccC--CCcccccccCccccccccccccCccceeeeccccccc
Q 041121 272 WMFDSLVILDLGNN----------------------SFSGR--IPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTF 327 (574)
Q Consensus 272 ~~l~~L~~L~L~~N----------------------~l~~~--~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~ 327 (574)
.+++|+.|++++| .+++. .+..+..+++|
T Consensus 326 -~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L-------------------------- 378 (606)
T 3vq2_A 326 -DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSL-------------------------- 378 (606)
T ss_dssp -CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCC--------------------------
T ss_pred -CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcc--------------------------
Confidence 4555555555555 44432 13333444444
Q ss_pred cccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCC-ccccccccCccccCCCCccccccccccCCCccccc
Q 041121 328 ESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIP-KCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHY 406 (574)
Q Consensus 328 ~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~ 406 (574)
+.+++++|.+.+ .+..+..+++|++|++++|++.+..+ ..+..+++|+.+++++|.+.
T Consensus 379 -----~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~--------------- 437 (606)
T 3vq2_A 379 -----RHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK--------------- 437 (606)
T ss_dssp -----CEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCE---------------
T ss_pred -----cEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCC---------------
Confidence 455555555543 22444555555555555555554444 34555555555555554432
Q ss_pred cccCcccccccCCCcccccccCcccEEEccCCcCCC-CCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCC
Q 041121 407 SFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNG-AVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSR 485 (574)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 485 (574)
+..+..+..+++|++|++++|.+++ .+|..|..+++|++|+|++|++++..|..|.++++|++|++++
T Consensus 438 -----------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 506 (606)
T 3vq2_A 438 -----------IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506 (606)
T ss_dssp -----------ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred -----------ccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCC
Confidence 2234456778999999999999986 3788899999999999999999999999999999999999999
Q ss_pred CcccccCCCCccCCCCCCEEeccCCcCcccCCCc-chhc-ccCcccccCCCCCCCCCCC
Q 041121 486 NQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTG-TQLQ-SFNGSVYAGNPELCGLPLP 542 (574)
Q Consensus 486 N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~~-~l~~~~l~~Np~~c~~~l~ 542 (574)
|++++..|..|..+++|+.|++++|+|+ .+|.. ..++ +++.+++++|||.|+|++.
T Consensus 507 N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 507 NNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp SCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred CcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccH
Confidence 9999998999999999999999999999 67765 3444 5899999999999999974
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-48 Score=423.10 Aligned_cols=532 Identities=20% Similarity=0.163 Sum_probs=345.5
Q ss_pred hhhhhcCCCCCcEEECCCCCCCCC-CchhhhcCCCCCCcEEEccCCCCCCCC----CcCCcccEEEccCCcCCCCCCccc
Q 041121 4 LLMRSLRLHSLRYLNLEENNLANC-SDWFQVIGKLHSLKTLTSHSCYLRPLS----NISSNFVSIDLSFNQLQGSIPDSS 78 (574)
Q Consensus 4 l~~~l~~l~~L~~L~Ls~n~i~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~L~~L~Ls~n~i~~~~~~~~ 78 (574)
+|..+. +++++|++++|.++.+ +. +|.++++|++|++++|.++.+. .-.++|++|++++|.++...+.+|
T Consensus 19 ip~~~~--~~l~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~ 93 (680)
T 1ziw_A 19 VPDDLP--TNITVLNLTHNQLRRLPAA---NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTF 93 (680)
T ss_dssp CCSCSC--TTCSEEECCSSCCCCCCGG---GGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTT
T ss_pred cccccC--CCCcEEECCCCCCCCcCHH---HHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhh
Confidence 454443 5788888888888887 44 6788888888888888887762 123788888888888886666678
Q ss_pred cCCCCCCEEEccCCcCccCchhhhhccc-----CCCCCccccccccccccccccCcEEEccCCcccccCCC-C--CCCCC
Q 041121 79 QHMVYLEHLSLMFNELEGGIPKFFGNML-----NLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPD-L--GGFSS 150 (574)
Q Consensus 79 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~-l--~~l~~ 150 (574)
..+++|++|++++|.+++..|..|.++. ++++|.+++++...+..+++ |++|++++|.+++..+. + ..+++
T Consensus 94 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~~~~~~ 172 (680)
T 1ziw_A 94 AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN-LQELLLSNNKIQALKSEELDIFANSS 172 (680)
T ss_dssp TTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTT-CCEEECCSSCCCCBCHHHHGGGTTCE
T ss_pred ccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhccccc-CCEEEccCCcccccCHHHhhcccccc
Confidence 8888888888888888766556665543 55666666654445666666 66666666666655443 2 24466
Q ss_pred CCEEEccCcccccccchhhhccCCCCEEEccCCCCCc-------------------ccCccccccCCchhhcCC--CCCC
Q 041121 151 MKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTD-------------------LANIQIKGKLPDLSSRFG--TSNP 209 (574)
Q Consensus 151 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-------------------l~~~~~~~~lp~~~~~~~--~~L~ 209 (574)
|++|++++|.+++..+..|..+++|+.|+++++.+.. +..+.+.+..|.. +..+ ++|+
T Consensus 173 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~-~~~l~~~~L~ 251 (680)
T 1ziw_A 173 LKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT-FLGLKWTNLT 251 (680)
T ss_dssp ESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTT-TGGGGGSCCC
T ss_pred ccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhH-hhccCcCCCC
Confidence 6666666666666666666555554444444433321 0001111111111 1222 2244
Q ss_pred eEeccCCcccCCCCCC---CCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCC-----CCC----cchhcCCCC
Q 041121 210 GIDISSNHFEGPIPPL---PSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSG-----KLP----DCWWMFDSL 277 (574)
Q Consensus 210 ~L~l~~n~l~~~~~~~---~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~-----~~~----~~~~~l~~L 277 (574)
.|++++|.+++..+.. +++|++|++++|.+.+..+..+..+++|++|++++|...+ ..| ..|..+++|
T Consensus 252 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L 331 (680)
T 1ziw_A 252 MLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCL 331 (680)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTC
T ss_pred EEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCC
Confidence 5555555444433322 3444455555555544444444444455555554433221 111 134445555
Q ss_pred cEEEccCcccccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCC
Q 041121 278 VILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQ 357 (574)
Q Consensus 278 ~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~ 357 (574)
++|++++|.+++..+..|..+++|+.++.......... +.............+.+++++|++.+..+..+..+++|+
T Consensus 332 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~---l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 408 (680)
T 1ziw_A 332 EHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT---LTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE 408 (680)
T ss_dssp CEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCE---ECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CEEECCCCccCCCChhHhccccCCcEEECCCCchhhhh---cchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCC
Confidence 55555555555544444555555544443221100000 000000000111228899999999999999999999999
Q ss_pred EEEccCCcccccCC-ccccccccCccccCCCCccccc-cccccCCCccccccccCcccccccCCCcccccccCcccEEEc
Q 041121 358 VLDLSLNNISGKIP-KCFNNFTAMTQERSSDPTIKVY-YYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLEL 435 (574)
Q Consensus 358 ~L~L~~n~l~~~~~-~~~~~l~~L~~l~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L 435 (574)
+|++++|.+++.++ ..|.++++|+.+++++|.+... ...+...+.+..+.+.++..... +..+..+..+++|+.|++
T Consensus 409 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~p~~~~~l~~L~~L~L 487 (680)
T 1ziw_A 409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV-DSSPSPFQPLRNLTILDL 487 (680)
T ss_dssp EEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCT-TCSSCTTTTCTTCCEEEC
T ss_pred EEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccccccc-ccCCcccccCCCCCEEEC
Confidence 99999999987665 6899999999999999987543 33455566777777776654332 344566788999999999
Q ss_pred cCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCC--------ccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEec
Q 041121 436 SSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNS--------PKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDL 507 (574)
Q Consensus 436 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--------~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~L 507 (574)
++|.+++..+..|.++++|++|+|++|++++..+ ..|.++++|++|++++|+++.+.++.|.++++|+.|++
T Consensus 488 s~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 567 (680)
T 1ziw_A 488 SNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDL 567 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeEC
Confidence 9999998888889999999999999999986532 24788999999999999999777778999999999999
Q ss_pred cCCcCcccCCCc--chhcccCcccccCCCC-------------------CCCCCCCCCCCC
Q 041121 508 SYNNLSGKIPTG--TQLQSFNGSVYAGNPE-------------------LCGLPLPNKCRD 547 (574)
Q Consensus 508 s~N~l~~~~p~~--~~~~~l~~~~l~~Np~-------------------~c~~~l~~~c~~ 547 (574)
++|+++ .+|.. ..+..++.+++++|.. +.++|+.+.|..
T Consensus 568 s~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 568 GLNNLN-TLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CCCCCC-cCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 999999 55554 3678899999998842 246778877864
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-48 Score=421.02 Aligned_cols=470 Identities=19% Similarity=0.165 Sum_probs=330.8
Q ss_pred hhhhcCCCCCcEEECCCCCCCCC-CchhhhcCCCCCCcEEEccCCCCCCC----CCcCCcccEEEccCCcCCCCCCcccc
Q 041121 5 LMRSLRLHSLRYLNLEENNLANC-SDWFQVIGKLHSLKTLTSHSCYLRPL----SNISSNFVSIDLSFNQLQGSIPDSSQ 79 (574)
Q Consensus 5 ~~~l~~l~~L~~L~Ls~n~i~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~L~~L~Ls~n~i~~~~~~~~~ 79 (574)
|.+|.++++|++|++++|.++.+ +. +|.++++|++|++++|+++.. ..-.++|++|++++|.++...+..+.
T Consensus 50 ~~~~~~l~~L~~L~Ls~n~i~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~ 126 (606)
T 3t6q_A 50 NTTFSRLINLTFLDLTRCQIYWIHED---TFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLH 126 (606)
T ss_dssp TTTSTTCTTCSEEECTTCCCCEECTT---TTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCT
T ss_pred hhHhccCccceEEECCCCccceeChh---hccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhc
Confidence 57899999999999999999988 66 899999999999999999876 23348999999999999987788899
Q ss_pred CCCCCCEEEccCCcCccCchhhhhccc-----CCCCCccccccccccccccccCc--EEEccCCcccccCCCCCCCCCCC
Q 041121 80 HMVYLEHLSLMFNELEGGIPKFFGNML-----NLSDNKLAIIQNMSSGCLKNSLE--SLHLEVNHFTGPIPDLGGFSSMK 152 (574)
Q Consensus 80 ~l~~L~~L~L~~n~l~~~~~~~~~~l~-----~L~~n~l~~l~~~~~~~l~~~L~--~L~L~~n~l~~~~~~l~~l~~L~ 152 (574)
.+++|++|++++|.+.+..+..+..+. ++++|.+++++...+..+++ |+ .|++++|.+++..+......+|+
T Consensus 127 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~l~L~l~~n~l~~~~~~~~~~~~L~ 205 (606)
T 3t6q_A 127 NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQ-ATNLSLNLNGNDIAGIEPGAFDSAVFQ 205 (606)
T ss_dssp TCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTT-CCSEEEECTTCCCCEECTTTTTTCEEE
T ss_pred cCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcc-cceeEEecCCCccCccChhHhhhcccc
Confidence 999999999999999875434443343 78899999976668889998 99 89999999998877743445666
Q ss_pred EEEccCcccc--------------------------cccchhhhccC--CCCEEEccCCCCCcccCccccccCCchhhcC
Q 041121 153 RLYLSDNLLN--------------------------GTINKSIGQIF--KLEITCLSQNSLTDLANIQIKGKLPDLSSRF 204 (574)
Q Consensus 153 ~L~L~~n~i~--------------------------~~~~~~~~~l~--~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~ 204 (574)
+|++++|... ...+..|..+. +|+.|++++|.++.++.. .+..
T Consensus 206 ~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~---------~~~~ 276 (606)
T 3t6q_A 206 SLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN---------TFHC 276 (606)
T ss_dssp EEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTT---------TTTT
T ss_pred ccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHH---------Hhcc
Confidence 6666655310 01122222222 566666666666543322 1455
Q ss_pred CCCCCeEeccCCcccCCCCCC--CCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCC-cchhcCCCCcEEE
Q 041121 205 GTSNPGIDISSNHFEGPIPPL--PSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLP-DCWWMFDSLVILD 281 (574)
Q Consensus 205 ~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~ 281 (574)
+++|++|++++|.++..++.. +++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+ ..+..+++|++|+
T Consensus 277 l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 356 (606)
T 3t6q_A 277 FSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD 356 (606)
T ss_dssp CTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEE
T ss_pred ccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEE
Confidence 666777777777666433222 4666777777777766666666666777777777776654333 3466667777777
Q ss_pred ccCcccccCC--CcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEE
Q 041121 282 LGNNSFSGRI--PDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVL 359 (574)
Q Consensus 282 L~~N~l~~~~--~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L 359 (574)
+++|.+++.. +..+..+++| +.+++++|.+.+..+..+..+++|++|
T Consensus 357 l~~n~l~~~~~~~~~~~~l~~L-------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L 405 (606)
T 3t6q_A 357 LSHDDIETSDCCNLQLRNLSHL-------------------------------QSLNLSYNEPLSLKTEAFKECPQLELL 405 (606)
T ss_dssp CCSSCCCEEEESTTTTTTCTTC-------------------------------CEEECCSCSCEEECTTTTTTCTTCSEE
T ss_pred CCCCccccccCcchhcccCCCC-------------------------------CEEECCCCcCCcCCHHHhcCCccCCeE
Confidence 7777666544 5556666666 445555555554444455555555555
Q ss_pred EccCCcccccCCc-cccccccCccccCCCCcccccc-ccccCCCccccccccCcccccccCCCcccccccCcccEEEccC
Q 041121 360 DLSLNNISGKIPK-CFNNFTAMTQERSSDPTIKVYY-YTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSS 437 (574)
Q Consensus 360 ~L~~n~l~~~~~~-~~~~l~~L~~l~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~ 437 (574)
++++|++++..+. .+..+++|+.+++++|.+.... ..+...+.+..+.+.++.+..........+..+++|++|++++
T Consensus 406 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~ 485 (606)
T 3t6q_A 406 DLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSF 485 (606)
T ss_dssp ECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTT
T ss_pred ECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCC
Confidence 5555555433332 2444555555555555443321 1223334444444444433221112234567899999999999
Q ss_pred CcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcccCC
Q 041121 438 NKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIP 517 (574)
Q Consensus 438 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p 517 (574)
|.+++..|..|.++++|++|+|++|++++..|..|.+++.| .|++++|++++..|+.+..+++|+.|++++|++.+..+
T Consensus 486 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 486 CDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred CccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 99998889999999999999999999999999999999999 99999999999999999999999999999999997666
Q ss_pred Cc
Q 041121 518 TG 519 (574)
Q Consensus 518 ~~ 519 (574)
..
T Consensus 565 ~~ 566 (606)
T 3t6q_A 565 NI 566 (606)
T ss_dssp GH
T ss_pred cH
Confidence 43
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-49 Score=436.95 Aligned_cols=483 Identities=20% Similarity=0.199 Sum_probs=318.9
Q ss_pred CCCCCcEEECCCCCCCCC-CchhhhcCCCCCCcEEEccCCCCCC-C----CCcCCcccEEEccCCcCCCCCCccccCCCC
Q 041121 10 RLHSLRYLNLEENNLANC-SDWFQVIGKLHSLKTLTSHSCYLRP-L----SNISSNFVSIDLSFNQLQGSIPDSSQHMVY 83 (574)
Q Consensus 10 ~l~~L~~L~Ls~n~i~~~-~~~~~~~~~l~~L~~L~l~~n~l~~-~----~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~ 83 (574)
-.++|++|+|++|.|+.+ +. +|.++++|++|++++|.... + ..-.++|++|+|++|.+++..|..|..+++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~---~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~ 98 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTAS---SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFH 98 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSS---SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSS
T ss_pred CCCCcCEEECCCCcCCccChh---HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcc
Confidence 347899999999999988 66 89999999999999995432 2 233479999999999999888999999999
Q ss_pred CCEEEccCCcCccCchhh--hhccc-----CCCCCcccccc-ccccccccccCcEEEccCCcccccCCC-CCCC--CCCC
Q 041121 84 LEHLSLMFNELEGGIPKF--FGNML-----NLSDNKLAIIQ-NMSSGCLKNSLESLHLEVNHFTGPIPD-LGGF--SSMK 152 (574)
Q Consensus 84 L~~L~L~~n~l~~~~~~~--~~~l~-----~L~~n~l~~l~-~~~~~~l~~~L~~L~L~~n~l~~~~~~-l~~l--~~L~ 152 (574)
|++|+|++|.+++..|.. |..+. +|++|.+++++ ...|.++++ |++|++++|.+++..+. +..+ ++|+
T Consensus 99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~-L~~L~Ls~N~i~~~~~~~l~~l~~~~L~ 177 (844)
T 3j0a_A 99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNS-LKSIDFSSNQIFLVCEHELEPLQGKTLS 177 (844)
T ss_dssp CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSS-CCEEEEESSCCCCCCSGGGHHHHHCSSC
T ss_pred cCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCC-CCEEECCCCcCCeeCHHHcccccCCccc
Confidence 999999999998766554 55443 55666666642 225667776 77777777777665554 5555 6777
Q ss_pred EEEccCcccccccchhhhccCC------CCEEEccCCCCCcccCccccccCC---------------------------c
Q 041121 153 RLYLSDNLLNGTINKSIGQIFK------LEITCLSQNSLTDLANIQIKGKLP---------------------------D 199 (574)
Q Consensus 153 ~L~L~~n~i~~~~~~~~~~l~~------L~~L~Ls~N~l~~l~~~~~~~~lp---------------------------~ 199 (574)
+|++++|.+.+..+..+..+++ |++|++++|.++......+...+. .
T Consensus 178 ~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~ 257 (844)
T 3j0a_A 178 FFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQ 257 (844)
T ss_dssp CCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGG
T ss_pred eEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCCh
Confidence 7777777776666655555544 777777777655322111111100 0
Q ss_pred hhhcC--CCCCCeEeccCCcccCCCCCC---CCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcC
Q 041121 200 LSSRF--GTSNPGIDISSNHFEGPIPPL---PSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMF 274 (574)
Q Consensus 200 ~~~~~--~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 274 (574)
..+.. .++++.|++++|.+.+..+.. +++|+.|+|++|.+.++.+..|..+++|++|++++|.+++..+..|.++
T Consensus 258 ~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 337 (844)
T 3j0a_A 258 NTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGL 337 (844)
T ss_dssp TTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSC
T ss_pred hhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCC
Confidence 00111 245666666666665544433 4566666666666666655556666666666666666665555666666
Q ss_pred CCCcEEEccCcccccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCC
Q 041121 275 DSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFA 354 (574)
Q Consensus 275 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~ 354 (574)
++|+.|++++|.+.+..+..|..+++| +.+++++|.+.+.. .++
T Consensus 338 ~~L~~L~L~~N~i~~~~~~~~~~l~~L-------------------------------~~L~Ls~N~l~~i~-----~~~ 381 (844)
T 3j0a_A 338 PKVAYIDLQKNHIAIIQDQTFKFLEKL-------------------------------QTLDLRDNALTTIH-----FIP 381 (844)
T ss_dssp TTCCEEECCSCCCCCCCSSCSCSCCCC-------------------------------CEEEEETCCSCCCS-----SCC
T ss_pred CCCCEEECCCCCCCccChhhhcCCCCC-------------------------------CEEECCCCCCCccc-----CCC
Confidence 666666666666665555555556666 44444444444211 134
Q ss_pred CCCEEEccCCcccccCCccccccccCccccCCCCcccccccc--ccCCCccccccccCcccccccCCCcccccccCcccE
Q 041121 355 FLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYT--FVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKS 432 (574)
Q Consensus 355 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 432 (574)
+|+.|++++|+++ .+|.. ...++.++++.|.+...... +...+.+..+.+.++.+..... ...+..+++|+.
T Consensus 382 ~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~~~~~L~~ 455 (844)
T 3j0a_A 382 SIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSG--DQTPSENPSLEQ 455 (844)
T ss_dssp SCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCS--SSSSCSCTTCCB
T ss_pred CcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccc--ccccccCCcccc
Confidence 4444444444444 22221 22344444444444332211 1133344444444443332211 112345788999
Q ss_pred EEccCCcCC-----CCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEec
Q 041121 433 LELSSNKLN-----GAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDL 507 (574)
Q Consensus 433 L~Ls~n~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~L 507 (574)
|++++|.++ +..+..|.++++|++|+|++|++++..+..|.++++|++|+|++|++++..+..+. ++|+.|++
T Consensus 456 L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~L 533 (844)
T 3j0a_A 456 LFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDI 533 (844)
T ss_dssp CEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEE
T ss_pred ccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEEC
Confidence 999999986 34456788999999999999999999999999999999999999999988777776 79999999
Q ss_pred cCCcCcccCCCcchhcccCcccccCCCCCCCCCCC
Q 041121 508 SYNNLSGKIPTGTQLQSFNGSVYAGNPELCGLPLP 542 (574)
Q Consensus 508 s~N~l~~~~p~~~~~~~l~~~~l~~Np~~c~~~l~ 542 (574)
++|+|++..|.. +..+..+++++|||.|+|++.
T Consensus 534 s~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~~~ 566 (844)
T 3j0a_A 534 SRNQLLAPNPDV--FVSLSVLDITHNKFICECELS 566 (844)
T ss_dssp EEECCCCCCSCC--CSSCCEEEEEEECCCCSSSCC
T ss_pred CCCcCCCCChhH--hCCcCEEEecCCCcccccccH
Confidence 999999887764 458889999999999999863
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-46 Score=404.87 Aligned_cols=439 Identities=19% Similarity=0.162 Sum_probs=368.1
Q ss_pred hhhhcCCCCCcEEECCCCCCCCC-CchhhhcCCCCCCcEEEccCCCCCCC-C---CcCCcccEEEccCCcCCCCCCcccc
Q 041121 5 LMRSLRLHSLRYLNLEENNLANC-SDWFQVIGKLHSLKTLTSHSCYLRPL-S---NISSNFVSIDLSFNQLQGSIPDSSQ 79 (574)
Q Consensus 5 ~~~l~~l~~L~~L~Ls~n~i~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~-~---~~~~~L~~L~Ls~n~i~~~~~~~~~ 79 (574)
+..|.++++|++|++++|.++.+ +. +|.++++|++|++++|+++.+ + .-.++|++|++++|.+++..+..+.
T Consensus 49 ~~~~~~l~~L~~L~Ls~n~l~~i~~~---~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 125 (606)
T 3vq2_A 49 SYSFSNFSELQWLDLSRCEIETIEDK---AWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIG 125 (606)
T ss_dssp TTTTTTCTTCCEEECTTCCCCEECTT---TTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCT
T ss_pred hhhccCCccCcEEeCCCCcccccCHH---HhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccC
Confidence 35789999999999999999998 66 799999999999999999887 2 2348999999999999988888899
Q ss_pred CCCCCCEEEccCCcCcc-Cchhhhhccc-----CCCCCccccccccccccccccCc----EEEccCCcccccCCCCCCCC
Q 041121 80 HMVYLEHLSLMFNELEG-GIPKFFGNML-----NLSDNKLAIIQNMSSGCLKNSLE----SLHLEVNHFTGPIPDLGGFS 149 (574)
Q Consensus 80 ~l~~L~~L~L~~n~l~~-~~~~~~~~l~-----~L~~n~l~~l~~~~~~~l~~~L~----~L~L~~n~l~~~~~~l~~l~ 149 (574)
++++|++|++++|.+.+ .+|..|+++. ++++|.+++++...+..+.+ |+ +|++++|.+++..+......
T Consensus 126 ~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~~l~~L~l~~n~l~~~~~~~~~~~ 204 (606)
T 3vq2_A 126 QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE-NPQVNLSLDMSLNPIDFIQDQAFQGI 204 (606)
T ss_dssp TCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHH-CTTCCCEEECTTCCCCEECTTTTTTC
T ss_pred CCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhc-cccccceeeccCCCcceeCcccccCc
Confidence 99999999999999986 4688888776 78899999977668888877 65 89999999998777733344
Q ss_pred CCCEEEccCccccc-ccchh--------------------------------------------------------hhcc
Q 041121 150 SMKRLYLSDNLLNG-TINKS--------------------------------------------------------IGQI 172 (574)
Q Consensus 150 ~L~~L~L~~n~i~~-~~~~~--------------------------------------------------------~~~l 172 (574)
+|++|++++|.+.+ ..+.. |..+
T Consensus 205 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l 284 (606)
T 3vq2_A 205 KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCL 284 (606)
T ss_dssp EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGG
T ss_pred eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccC
Confidence 89999999987641 12222 5556
Q ss_pred CCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCCC-CCCCcEEEcCCCcccccccccccCCC
Q 041121 173 FKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPL-PSNSSFLNLSKNRFSRSISLCSISGS 251 (574)
Q Consensus 173 ~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~L~~n~i~~~~~~~~~~~~ 251 (574)
++|+.|++++|.++.++ .+..+++|++|++++|.+ +.+|.. +++|++|++++|...+.. .+..++
T Consensus 285 ~~L~~L~l~~~~~~~l~-----------~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~~~--~~~~l~ 350 (606)
T 3vq2_A 285 ANVSAMSLAGVSIKYLE-----------DVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGSISF--KKVALP 350 (606)
T ss_dssp TTCSEEEEESCCCCCCC-----------CCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSCEEC--CCCCCT
T ss_pred CCCCEEEecCccchhhh-----------hccccccCCEEEcccccC-cccccCCCCccceeeccCCcCccch--hhccCC
Confidence 67777777777766433 146678899999999998 455543 788999999999554433 566889
Q ss_pred CccEEECCCCCCCCC--CCcchhcCCCCcEEEccCcccccCCCcccccccCccccccccccccCccceeeeccccccccc
Q 041121 252 KLTYIDLSSNLLSGK--LPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFES 329 (574)
Q Consensus 252 ~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~ 329 (574)
+|++|++++|.+++. .+..+..+++|++|++++|.+++ .|..+..+++|
T Consensus 351 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L---------------------------- 401 (606)
T 3vq2_A 351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEEL---------------------------- 401 (606)
T ss_dssp TCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTC----------------------------
T ss_pred CCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCC----------------------------
Confidence 999999999999865 37889999999999999999985 55788888888
Q ss_pred cccceEEecCceeccCCC-hhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccc
Q 041121 330 WEERFVRLKSNKFHGKTP-FQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSF 408 (574)
Q Consensus 330 ~~~~~l~L~~n~~~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 408 (574)
+.+++++|.+.+..+ ..+..+++|++|++++|.+++..|..+.++++|+.+++++|.+...
T Consensus 402 ---~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--------------- 463 (606)
T 3vq2_A 402 ---QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN--------------- 463 (606)
T ss_dssp ---CEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG---------------
T ss_pred ---CeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCc---------------
Confidence 899999999998877 6889999999999999999988999999999999999999876520
Q ss_pred cCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcc
Q 041121 409 QDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQL 488 (574)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i 488 (574)
..+..+..+++|++|++++|.+++..|..|.++++|++|+|++|++++..|..|.++++|++|++++|++
T Consensus 464 ----------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l 533 (606)
T 3vq2_A 464 ----------TLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533 (606)
T ss_dssp ----------EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCC
T ss_pred ----------chHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcC
Confidence 1233456788999999999999988899999999999999999999999899999999999999999999
Q ss_pred cccCCCCccCCC-CCCEEeccCCcCcccCCCc
Q 041121 489 VGGIPSSLSPLS-VLSVMDLSYNNLSGKIPTG 519 (574)
Q Consensus 489 ~~~~~~~l~~l~-~L~~L~Ls~N~l~~~~p~~ 519 (574)
+ .+|..+..++ +|+.|++++|++.+..+..
T Consensus 534 ~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 534 E-TSKGILQHFPKSLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp C-CEESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred c-ccCHhHhhhcccCcEEEccCCCcccCCccH
Confidence 9 5556688887 5999999999999766654
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-45 Score=389.51 Aligned_cols=473 Identities=21% Similarity=0.174 Sum_probs=307.4
Q ss_pred CcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCCC----CcCCcccEEEccCCcCCCCCCccccCCCCCCEEEc
Q 041121 14 LRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLS----NISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSL 89 (574)
Q Consensus 14 L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 89 (574)
.+..+.++.+++.+|. .+. +++++|++++|+++.+. .-.++|++|++++|++++..+.+|.++++|++|++
T Consensus 9 ~~~~~c~~~~l~~ip~---~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L 83 (570)
T 2z63_A 9 NITYQCMELNFYKIPD---NLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 83 (570)
T ss_dssp TTEEECCSSCCSSCCS---SSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CcEEEeCCCCccccCC---Ccc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeC
Confidence 4578888888888876 343 57999999999988772 22479999999999999888888999999999999
Q ss_pred cCCcCccCchhhhhccc-----CCCCCccccccccccccccccCcEEEccCCccccc-CCC-CCCCCCCCEEEccCcccc
Q 041121 90 MFNELEGGIPKFFGNML-----NLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGP-IPD-LGGFSSMKRLYLSDNLLN 162 (574)
Q Consensus 90 ~~n~l~~~~~~~~~~l~-----~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~-~~~-l~~l~~L~~L~L~~n~i~ 162 (574)
++|++++..|..|.++. ++++|.++.++...+..+++ |++|++++|.+++. .|. |.++++|++|++++|+++
T Consensus 84 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~-L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 84 TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT-LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp TTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTT-CCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC
T ss_pred cCCcCCccCHhhhcCccccccccccccccccCCCcccccccc-ccEEecCCCccceecChhhhcccCCCCEEeCcCCccc
Confidence 99999866666665543 55566666665555666666 66666666666642 233 666666666666666666
Q ss_pred cccchhhhccCCC----CEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCC-----------------
Q 041121 163 GTINKSIGQIFKL----EITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGP----------------- 221 (574)
Q Consensus 163 ~~~~~~~~~l~~L----~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~----------------- 221 (574)
+..+..|..+++| +.|++++|.++.+....+ ... +|+.+++++|.....
T Consensus 163 ~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~---------~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l 232 (570)
T 2z63_A 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF---------KEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL 232 (570)
T ss_dssp EECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTT---------TTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEE
T ss_pred eecHHHccchhccchhhhhcccCCCCceecCHHHh---------ccC-cceeEecccccccccchhhhhcCccccceeee
Confidence 5555666666666 566666666654433221 111 455555554421100
Q ss_pred -------------CC-CCC-----CCCcEEEcCCC-cccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEE
Q 041121 222 -------------IP-PLP-----SNSSFLNLSKN-RFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILD 281 (574)
Q Consensus 222 -------------~~-~~~-----~~L~~L~L~~n-~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 281 (574)
++ ..+ ..++.++++++ .+.+..+..+..+++|++|++++|.++ ..|..+..+ +|+.|+
T Consensus 233 ~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~ 310 (570)
T 2z63_A 233 VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLE 310 (570)
T ss_dssp EEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEE
T ss_pred ccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEe
Confidence 00 000 01223333333 333334444455566666666666665 355555555 666666
Q ss_pred ccCcccccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEc
Q 041121 282 LGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDL 361 (574)
Q Consensus 282 L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L 361 (574)
+++|.+. .+|. ..+++| +.+++++|.+.+..+. ..+++|++|++
T Consensus 311 l~~n~~~-~l~~--~~l~~L-------------------------------~~L~l~~n~~~~~~~~--~~~~~L~~L~l 354 (570)
T 2z63_A 311 LVNCKFG-QFPT--LKLKSL-------------------------------KRLTFTSNKGGNAFSE--VDLPSLEFLDL 354 (570)
T ss_dssp EESCBCS-SCCB--CBCSSC-------------------------------CEEEEESCBSCCBCCC--CBCTTCCEEEC
T ss_pred eccCccc-ccCc--cccccc-------------------------------CEEeCcCCcccccccc--ccCCCCCEEeC
Confidence 6666665 3332 234444 4444444444433322 34444555555
Q ss_pred cCCcccccC--CccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCc
Q 041121 362 SLNNISGKI--PKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNK 439 (574)
Q Consensus 362 ~~n~l~~~~--~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~ 439 (574)
++|.+++.. +..+.++++|+.+++++|.+......+...+.+..+.+.++.+... .....+..+++|++|++++|.
T Consensus 355 ~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~l~~L~~L~l~~n~ 432 (570)
T 2z63_A 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM--SEFSVFLSLRNLIYLDISHTH 432 (570)
T ss_dssp CSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESC--TTSCTTTTCTTCCEEECTTSC
T ss_pred cCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccc--cchhhhhcCCCCCEEeCcCCc
Confidence 555444322 3334444445555544444443333333334444444443332221 112346678999999999999
Q ss_pred CCCCCcHhhhhcCCCCEEeCCCCcCc-ccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcccCCC
Q 041121 440 LNGAVPEEIMDLVGLVALNLSRNHLT-GQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPT 518 (574)
Q Consensus 440 l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~ 518 (574)
+.+..|..|.++++|++|++++|+++ +..|..|..+++|++|++++|++++..|..|..+++|+.|++++|++++..|.
T Consensus 433 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 512 (570)
T 2z63_A 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG 512 (570)
T ss_dssp CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHH
Confidence 99888999999999999999999997 56888999999999999999999999899999999999999999999966665
Q ss_pred c-chhcccCcccccCCCCCCCCCCC
Q 041121 519 G-TQLQSFNGSVYAGNPELCGLPLP 542 (574)
Q Consensus 519 ~-~~~~~l~~~~l~~Np~~c~~~l~ 542 (574)
. ..++.++.+++++||+.|+|+..
T Consensus 513 ~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 513 IFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp TTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred HhhcccCCcEEEecCCcccCCCcch
Confidence 4 46789999999999999999864
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-45 Score=391.06 Aligned_cols=461 Identities=20% Similarity=0.174 Sum_probs=372.5
Q ss_pred hhhhhcCCCCCcEEECCCCCCCCC-CchhhhcCCCCCCcEEEccCCCCCCCC----CcCCcccEEEccCCcCCCCCCccc
Q 041121 4 LLMRSLRLHSLRYLNLEENNLANC-SDWFQVIGKLHSLKTLTSHSCYLRPLS----NISSNFVSIDLSFNQLQGSIPDSS 78 (574)
Q Consensus 4 l~~~l~~l~~L~~L~Ls~n~i~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~L~~L~Ls~n~i~~~~~~~~ 78 (574)
+|..+. +++++|++++|.++.+ +. +|.++++|++|++++|+++.+. .-.++|++|++++|.++...+.+|
T Consensus 22 ip~~l~--~~l~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 96 (570)
T 2z63_A 22 IPDNLP--FSTKNLDLSFNPLRHLGSY---SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF 96 (570)
T ss_dssp CCSSSC--SSCCEEECCSCCCCEECTT---TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT
T ss_pred cCCCcc--ccccEEEccCCccCccChh---HhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhh
Confidence 454443 4799999999999888 55 7899999999999999988762 224799999999999988888899
Q ss_pred cCCCCCCEEEccCCcCccCchhhhhccc-----CCCCCcccc--ccccccccccccCcEEEccCCcccccCCC-CCCCCC
Q 041121 79 QHMVYLEHLSLMFNELEGGIPKFFGNML-----NLSDNKLAI--IQNMSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSS 150 (574)
Q Consensus 79 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----~L~~n~l~~--l~~~~~~~l~~~L~~L~L~~n~l~~~~~~-l~~l~~ 150 (574)
..+++|++|++++|.+++..+..|+.+. ++++|.++. +|. .+.++++ |++|++++|++++..+. +..+++
T Consensus 97 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~-~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~ 174 (570)
T 2z63_A 97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTN-LEHLDLSSNKIQSIYCTDLRVLHQ 174 (570)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCG-GGGGCTT-CCEEECTTSCCCEECGGGGHHHHT
T ss_pred cCccccccccccccccccCCCccccccccccEEecCCCccceecChh-hhcccCC-CCEEeCcCCccceecHHHccchhc
Confidence 9999999999999999865554566654 778888887 566 8889998 99999999999887766 777777
Q ss_pred C----CEEEccCcccccccchhhhccCCCCEEEccCCCCC-------------------------------cccCc----
Q 041121 151 M----KRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLT-------------------------------DLANI---- 191 (574)
Q Consensus 151 L----~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~-------------------------------~l~~~---- 191 (574)
| ++|++++|.+.+..+..|... +|+.|++++|... .++..
T Consensus 175 L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~ 253 (570)
T 2z63_A 175 MPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 253 (570)
T ss_dssp CTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGG
T ss_pred cchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhcc
Confidence 7 899999999998888887766 7999988887321 11111
Q ss_pred ---------------cccccCCchhhcCCCCCCeEeccCCcccCCCCCC--CCCCcEEEcCCCcccccccccccCCCCcc
Q 041121 192 ---------------QIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPL--PSNSSFLNLSKNRFSRSISLCSISGSKLT 254 (574)
Q Consensus 192 ---------------~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~L~~n~i~~~~~~~~~~~~~L~ 254 (574)
.+.+..|.. +..+++|+.|++++|.+.+..+.. . +|++|++++|.+..++. ..+++|+
T Consensus 254 l~~l~l~~l~l~~~~~~~~~~~~~-~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~---~~l~~L~ 328 (570)
T 2z63_A 254 LCNLTIEEFRLAYLDYYLDDIIDL-FNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPT---LKLKSLK 328 (570)
T ss_dssp GGGSEEEEEEEEETTEEESCSTTT-TGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCB---CBCSSCC
T ss_pred ccccchhhhhhhcchhhhhhchhh-hcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCc---ccccccC
Confidence 223344554 677899999999999998643322 5 89999999999986554 3678999
Q ss_pred EEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCC--CcccccccCccccccccccccCccceeeecccccccccccc
Q 041121 255 YIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRI--PDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEE 332 (574)
Q Consensus 255 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 332 (574)
+|++++|.+.+..+. ..+++|+.|++++|.+++.. +..+..+++|
T Consensus 329 ~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L------------------------------- 375 (570)
T 2z63_A 329 RLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL------------------------------- 375 (570)
T ss_dssp EEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCC-------------------------------
T ss_pred EEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCcc-------------------------------
Confidence 999999998866554 68899999999999998654 5677788888
Q ss_pred ceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCC-ccccccccCccccCCCCccccccccccCCCccccccccCc
Q 041121 333 RFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIP-KCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDK 411 (574)
Q Consensus 333 ~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (574)
+.+++++|.+.+..+. +..+++|++|++++|.+.+..+ ..+..+++|+.+++++|.+..
T Consensus 376 ~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~------------------- 435 (570)
T 2z63_A 376 KYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV------------------- 435 (570)
T ss_dssp CEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEE-------------------
T ss_pred CEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccc-------------------
Confidence 8899999999876555 8899999999999999987665 568899999999998887642
Q ss_pred ccccccCCCcccccccCcccEEEccCCcCC-CCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccc
Q 041121 412 VMPTWKGSGREYRSTLGLIKSLELSSNKLN-GAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVG 490 (574)
Q Consensus 412 ~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~ 490 (574)
..+..+..+++|++|++++|.++ +.+|..|..+++|++|+|++|++++..|..|.++++|++|++++|++++
T Consensus 436 -------~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 508 (570)
T 2z63_A 436 -------AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS 508 (570)
T ss_dssp -------CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred -------cchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCC
Confidence 22334567889999999999997 4688899999999999999999999989999999999999999999999
Q ss_pred cCCCCccCCCCCCEEeccCCcCcccCCCcchh-cccC--cccccCCCCCCC
Q 041121 491 GIPSSLSPLSVLSVMDLSYNNLSGKIPTGTQL-QSFN--GSVYAGNPELCG 538 (574)
Q Consensus 491 ~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~-~~l~--~~~l~~Np~~c~ 538 (574)
..++.|..+++|+.|++++|++++.+|....+ ..+. ...+.+.| .|.
T Consensus 509 ~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~wl~~~~~~~~~~~-~C~ 558 (570)
T 2z63_A 509 VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSA-KCS 558 (570)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHTGGGEESCC-BBT
T ss_pred CCHHHhhcccCCcEEEecCCcccCCCcchHHHHHHHHhccccCCCch-hhC
Confidence 88899999999999999999999988875333 2222 23355555 554
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-45 Score=392.37 Aligned_cols=430 Identities=20% Similarity=0.162 Sum_probs=260.0
Q ss_pred CCCcEEECCCCCCCCC-CchhhhcCCCCCCcEEEccCCCCCCCC----CcCCcccEEEccCCcCCCCCCccccCCCCCCE
Q 041121 12 HSLRYLNLEENNLANC-SDWFQVIGKLHSLKTLTSHSCYLRPLS----NISSNFVSIDLSFNQLQGSIPDSSQHMVYLEH 86 (574)
Q Consensus 12 ~~L~~L~Ls~n~i~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 86 (574)
++|++|++++|.++.+ +. +|..+++|++|++++|+++.+. .-.++|++|++++|++++..+..|+.+++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 102 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHG---DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKY 102 (549)
T ss_dssp TTCCEEECCSSCCCEECSS---TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCE
T ss_pred CCccEEECcCCccCccChh---hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcE
Confidence 5677777777777666 44 5677777777777777666552 12256777777777776666666677777777
Q ss_pred EEccCCcCccC-chhhhhcccCCCCCccccccccccccccccCcEEEccCCc-ccccCCC-CCCCCCCCEEEccCccccc
Q 041121 87 LSLMFNELEGG-IPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNH-FTGPIPD-LGGFSSMKRLYLSDNLLNG 163 (574)
Q Consensus 87 L~L~~n~l~~~-~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~-l~~~~~~-l~~l~~L~~L~L~~n~i~~ 163 (574)
|++++|.+++. .|. .+..+++ |++|++++|+ +....+. |.++++|++|++++|++++
T Consensus 103 L~Ls~n~l~~~~~~~-------------------~~~~l~~-L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 162 (549)
T 2z81_A 103 LNLMGNPYQTLGVTS-------------------LFPNLTN-LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162 (549)
T ss_dssp EECTTCCCSSSCSSC-------------------SCTTCTT-CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred EECCCCcccccchhh-------------------hhhccCC-ccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence 77777766642 233 4555555 6666666665 3333333 6666666666666666666
Q ss_pred ccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCC------CCCCCCCcEEEcCCC
Q 041121 164 TINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPI------PPLPSNSSFLNLSKN 237 (574)
Q Consensus 164 ~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~------~~~~~~L~~L~L~~n 237 (574)
..|..+..+++|++|++++|.+..+ |...+..+++|++|++++|.+++.. .....+|+.|++++|
T Consensus 163 ~~~~~l~~l~~L~~L~l~~n~~~~~---------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n 233 (549)
T 2z81_A 163 YQSQSLKSIRDIHHLTLHLSESAFL---------LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS 233 (549)
T ss_dssp ECTTTTTTCSEEEEEEEECSBSTTH---------HHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESC
T ss_pred cChhhhhccccCceEecccCccccc---------chhhHhhcccccEEEccCCccccccccccchhhhhhcccceecccc
Confidence 6666666666666666666654422 2222344566666666666666531 112455666666666
Q ss_pred cccccccc----cccCCCCccEEECCCCCCCCCC------CcchhcCCCCcEEEccCccccc------------------
Q 041121 238 RFSRSISL----CSISGSKLTYIDLSSNLLSGKL------PDCWWMFDSLVILDLGNNSFSG------------------ 289 (574)
Q Consensus 238 ~i~~~~~~----~~~~~~~L~~L~L~~n~l~~~~------~~~~~~l~~L~~L~L~~N~l~~------------------ 289 (574)
.+.+..+. .+..+++|+.+++++|.+.+.. ...+..+++|+.|+++++.+..
T Consensus 234 ~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~ 313 (549)
T 2z81_A 234 VLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVK 313 (549)
T ss_dssp EEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCC
T ss_pred ccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccce
Confidence 65543221 1223455556666555543211 1123344455555555544432
Q ss_pred ----------CCCccc-ccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCCh---hhcCCCC
Q 041121 290 ----------RIPDSM-GFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPF---QLCQFAF 355 (574)
Q Consensus 290 ----------~~~~~~-~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~---~~~~~~~ 355 (574)
.+|..+ ..+++| +.+++++|++.+..+. .+..+++
T Consensus 314 ~L~l~~n~l~~ip~~~~~~l~~L-------------------------------~~L~Ls~N~l~~~~~~~~~~~~~l~~ 362 (549)
T 2z81_A 314 RITVENSKVFLVPCSFSQHLKSL-------------------------------EFLDLSENLMVEEYLKNSACKGAWPS 362 (549)
T ss_dssp EEEEESSCCCCCCHHHHHHCTTC-------------------------------CEEECCSSCCCHHHHHHHTCTTSSTT
T ss_pred EEEeccCccccCCHHHHhcCccc-------------------------------cEEEccCCccccccccchhhhhcccc
Confidence 222222 233333 4455555555443321 2344455
Q ss_pred CCEEEccCCcccccCC--ccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEE
Q 041121 356 LQVLDLSLNNISGKIP--KCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSL 433 (574)
Q Consensus 356 L~~L~L~~n~l~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 433 (574)
|++|++++|++++..+ ..+..+++|+.+++++|.+. . .+..+..+++|++|
T Consensus 363 L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-----------------------~----lp~~~~~~~~L~~L 415 (549)
T 2z81_A 363 LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-----------------------P----MPDSCQWPEKMRFL 415 (549)
T ss_dssp CCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-----------------------C----CCSCCCCCTTCCEE
T ss_pred CcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-----------------------c----CChhhcccccccEE
Confidence 5555555555543221 23444555555555554433 1 12234567889999
Q ss_pred EccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCc
Q 041121 434 ELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLS 513 (574)
Q Consensus 434 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~ 513 (574)
++++|.++ .+|..+ .++|++|+|++|++++.. ..+++|++|++++|+++ .+|. ...+++|+.|++++|+++
T Consensus 416 ~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~ 486 (549)
T 2z81_A 416 NLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLK 486 (549)
T ss_dssp ECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCC
T ss_pred ECCCCCcc-cccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccC
Confidence 99999997 445443 268999999999998643 57899999999999999 4555 467899999999999999
Q ss_pred ccCCCc-chhcccCcccccCCCCCCCCC
Q 041121 514 GKIPTG-TQLQSFNGSVYAGNPELCGLP 540 (574)
Q Consensus 514 ~~~p~~-~~~~~l~~~~l~~Np~~c~~~ 540 (574)
+..|.. ..++.++.+++++|||.|+|+
T Consensus 487 ~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 487 SVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 777764 568889999999999999998
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-44 Score=385.80 Aligned_cols=422 Identities=16% Similarity=0.162 Sum_probs=295.9
Q ss_pred CCCcEEECCCCCCCCC-CchhhhcCCCCCCcEEEccCCCCCCCC---C---c----------------------------
Q 041121 12 HSLRYLNLEENNLANC-SDWFQVIGKLHSLKTLTSHSCYLRPLS---N---I---------------------------- 56 (574)
Q Consensus 12 ~~L~~L~Ls~n~i~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~---~---~---------------------------- 56 (574)
.+++.|+|++++++.. |. +|+++++|++|+|++|.+.... + .
T Consensus 81 ~~V~~L~L~~~~l~g~lp~---~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPD---AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPRED 157 (636)
T ss_dssp CCEEEEECTTSCCEEEECG---GGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGG
T ss_pred CCEEEEEecCcccCCcCCh---HHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhh
Confidence 5899999999999877 76 8999999999999999651110 0 0
Q ss_pred ----C------------------CcccEEEc--cCCcCCCCCCccccCCCCCCEEEccCCcCccC-chhhhhcccCCCCC
Q 041121 57 ----S------------------SNFVSIDL--SFNQLQGSIPDSSQHMVYLEHLSLMFNELEGG-IPKFFGNMLNLSDN 111 (574)
Q Consensus 57 ----~------------------~~L~~L~L--s~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~n 111 (574)
. ..++.+.+ ..|++++ +|..++++++|++|+|++|.+++. .+.... .-...
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~---~~~~~ 233 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWE---NENSE 233 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCS---CTTSH
T ss_pred HHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcccccccccccc---ccccc
Confidence 0 01111111 1578887 888999999999999999999863 110000 00000
Q ss_pred cccc-ccccccc--cccccCcEEEccCCcccccCCC-CCCCCCCCEEEccCcc-ccc-ccchhhhcc------CCCCEEE
Q 041121 112 KLAI-IQNMSSG--CLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNL-LNG-TINKSIGQI------FKLEITC 179 (574)
Q Consensus 112 ~l~~-l~~~~~~--~l~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~L~~n~-i~~-~~~~~~~~l------~~L~~L~ 179 (574)
...+ +|. .+. ++++ |++|++++|++.+..|. +.++++|++|++++|+ +++ .+|..+..+ ++|++|+
T Consensus 234 ~~~~~ip~-~l~~~~l~~-L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~ 311 (636)
T 4eco_A 234 YAQQYKTE-DLKWDNLKD-LTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIY 311 (636)
T ss_dssp HHHHHTTS-CCCGGGCTT-CCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEE
T ss_pred hhcccCch-hhhhcccCC-CCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEE
Confidence 1111 344 556 8888 99999999999988887 9999999999999998 998 789888887 9999999
Q ss_pred ccCCCCCcccCccccccCCc-hhhcCCCCCCeEeccCCcccCCCCCC--CCCCcEEEcCCCcccccccccccCCCC-ccE
Q 041121 180 LSQNSLTDLANIQIKGKLPD-LSSRFGTSNPGIDISSNHFEGPIPPL--PSNSSFLNLSKNRFSRSISLCSISGSK-LTY 255 (574)
Q Consensus 180 Ls~N~l~~l~~~~~~~~lp~-~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~L~~n~i~~~~~~~~~~~~~-L~~ 255 (574)
+++|.++. +|. ..+..+++|+.|++++|.++|.+|.. +++|++|++++|.+..+ +..+..+++ |++
T Consensus 312 L~~n~l~~---------ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~l-p~~l~~l~~~L~~ 381 (636)
T 4eco_A 312 IGYNNLKT---------FPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEI-PANFCGFTEQVEN 381 (636)
T ss_dssp CCSSCCSS---------CCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEEC-CTTSEEECTTCCE
T ss_pred CCCCcCCc---------cCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccc-cHhhhhhcccCcE
Confidence 99999874 444 12678899999999999999877744 68899999999999954 445778888 999
Q ss_pred EECCCCCCCCCCCcchhcCC--CCcEEEccCcccccCCCcccc-------cccCccccccccccccCccceeeecccccc
Q 041121 256 IDLSSNLLSGKLPDCWWMFD--SLVILDLGNNSFSGRIPDSMG-------FLQNIQTQFTQQQFNRRTVFIVWELLTTQT 326 (574)
Q Consensus 256 L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~N~l~~~~~~~~~-------~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~ 326 (574)
|++++|.++ .+|..+..+. +|+.|++++|.+++..|..+. .+++|
T Consensus 382 L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L------------------------- 435 (636)
T 4eco_A 382 LSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINV------------------------- 435 (636)
T ss_dssp EECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCE-------------------------
T ss_pred EEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCC-------------------------
Confidence 999999999 6787777655 899999999999998888887 66667
Q ss_pred ccccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccc-------cCccccCCCCccccccccccC
Q 041121 327 FESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFT-------AMTQERSSDPTIKVYYYTFVG 399 (574)
Q Consensus 327 ~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-------~L~~l~l~~~~~~~~~~~~~~ 399 (574)
+.+++++|.+....+..+..+++|++|+|++|+++...+..+.... +|+.+++++|.+..++..+.
T Consensus 436 ------~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~- 508 (636)
T 4eco_A 436 ------SSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFR- 508 (636)
T ss_dssp ------EEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGS-
T ss_pred ------CEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhh-
Confidence 8899999999976666677799999999999999843333343322 55555555554431111000
Q ss_pred CCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeC------CCCcCcccCCcccc
Q 041121 400 PPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNL------SRNHLTGQNSPKIG 473 (574)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L------s~N~l~~~~~~~~~ 473 (574)
...+++|+.|++++|.+++ +|..+..+++|++|+| ++|++.+.+|..+.
T Consensus 509 ------------------------~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~ 563 (636)
T 4eco_A 509 ------------------------ATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGIT 563 (636)
T ss_dssp ------------------------TTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGG
T ss_pred ------------------------hccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHh
Confidence 0134455555555555553 4555555555555555 33444455555555
Q ss_pred CCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCc
Q 041121 474 QLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLS 513 (574)
Q Consensus 474 ~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~ 513 (574)
++++|++|++++|++. .+|..+. ++|+.|++++|++.
T Consensus 564 ~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 564 LCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp GCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTC
T ss_pred cCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCc
Confidence 5555555555555553 3344333 45555555555554
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-44 Score=395.66 Aligned_cols=470 Identities=18% Similarity=0.127 Sum_probs=315.6
Q ss_pred cEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCC----CCcCCcccEEEccCCcCCCC-CCccccCCCCCCEEEc
Q 041121 15 RYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPL----SNISSNFVSIDLSFNQLQGS-IPDSSQHMVYLEHLSL 89 (574)
Q Consensus 15 ~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L 89 (574)
+..+.++++++.+|. -.++|++|+|++|.++.+ ..-.++|++|++++|..... .|.+|.++++|++|+|
T Consensus 7 ~~~dcs~~~L~~vP~------lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~L 80 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ------VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80 (844)
T ss_dssp EEEEESCCCSSCCCS------SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEEC
T ss_pred eEEEccCCCCCCCCC------CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEEC
Confidence 467888888888864 347899999999998876 22337999999999955444 4888999999999999
Q ss_pred cCCcCccCchhhhhccc-----CCCCCcccc-ccc-cccccccccCcEEEccCCcccccCCC--CCCCCCCCEEEccCcc
Q 041121 90 MFNELEGGIPKFFGNML-----NLSDNKLAI-IQN-MSSGCLKNSLESLHLEVNHFTGPIPD--LGGFSSMKRLYLSDNL 160 (574)
Q Consensus 90 ~~n~l~~~~~~~~~~l~-----~L~~n~l~~-l~~-~~~~~l~~~L~~L~L~~n~l~~~~~~--l~~l~~L~~L~L~~n~ 160 (574)
++|.+.+..|..|.++. +|++|.+++ ++. ..+..+++ |++|++++|.+++..+. |.++++|++|++++|.
T Consensus 81 s~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~-L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 81 GSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA-LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp TTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSS-CCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred CCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCC-CCEEECCCCcccccccchhHhhCCCCCEEECCCCc
Confidence 99999987788887765 667787776 333 34778887 88888888888776543 7888888888888888
Q ss_pred cccccchhhhcc--CCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCCC-------------
Q 041121 161 LNGTINKSIGQI--FKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPL------------- 225 (574)
Q Consensus 161 i~~~~~~~~~~l--~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~------------- 225 (574)
+++..+..|..+ ++|+.|++++|.+.......+. ..+.. +. ...|+.|++++|.+.+..+..
T Consensus 160 i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~-~~~~~-~~-~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L 236 (844)
T 3j0a_A 160 IFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWG-KCMNP-FR-NMVLEILDVSGNGWTVDITGNFSNAISKSQAFSL 236 (844)
T ss_dssp CCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCC-SSSCT-TT-TCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEE
T ss_pred CCeeCHHHcccccCCccceEECCCCccccccccchh-hcCCc-cc-cCceeEEecCCCcCchhHHHHHHhhcCcccccce
Confidence 887777777777 7888888888877642211111 01100 11 124888888888776544322
Q ss_pred ----------------------------CCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCC
Q 041121 226 ----------------------------PSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSL 277 (574)
Q Consensus 226 ----------------------------~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 277 (574)
.++++.|++++|.+.+..+..+..+++|++|++++|.+++..+..|.++++|
T Consensus 237 ~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 316 (844)
T 3j0a_A 237 ILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNL 316 (844)
T ss_dssp ECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSC
T ss_pred ecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCC
Confidence 1345555555555555555455555555555555555554445555555555
Q ss_pred cEEEccCcccccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCC
Q 041121 278 VILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQ 357 (574)
Q Consensus 278 ~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~ 357 (574)
++|++++|.+++..+..+..+++| +.+++++|.+....+..|..+++|+
T Consensus 317 ~~L~Ls~N~l~~~~~~~~~~l~~L-------------------------------~~L~L~~N~i~~~~~~~~~~l~~L~ 365 (844)
T 3j0a_A 317 QVLNLSYNLLGELYSSNFYGLPKV-------------------------------AYIDLQKNHIAIIQDQTFKFLEKLQ 365 (844)
T ss_dssp CEEEEESCCCSCCCSCSCSSCTTC-------------------------------CEEECCSCCCCCCCSSCSCSCCCCC
T ss_pred CEEECCCCCCCccCHHHhcCCCCC-------------------------------CEEECCCCCCCccChhhhcCCCCCC
Confidence 555555555554445555555555 5556666665555555555566666
Q ss_pred EEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccC
Q 041121 358 VLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSS 437 (574)
Q Consensus 358 ~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~ 437 (574)
+|+|++|.+++. ..+++|+.+++++|.+..++.. ...+..+.+..+.+.... ....+..+++|+.|++++
T Consensus 366 ~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~l~~~---~~~l~~L~ls~N~l~~l~--~~~~~~~l~~L~~L~Ls~ 435 (844)
T 3j0a_A 366 TLDLRDNALTTI-----HFIPSIPDIFLSGNKLVTLPKI---NLTANLIHLSENRLENLD--ILYFLLRVPHLQILILNQ 435 (844)
T ss_dssp EEEEETCCSCCC-----SSCCSCSEEEEESCCCCCCCCC---CTTCCEEECCSCCCCSST--THHHHTTCTTCCEEEEES
T ss_pred EEECCCCCCCcc-----cCCCCcchhccCCCCccccccc---ccccceeecccCccccCc--hhhhhhcCCccceeeCCC
Confidence 666666655521 1144555555555555433211 112223333333322221 112345789999999999
Q ss_pred CcCCCCCcH-hhhhcCCCCEEeCCCCcCc-----ccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCc
Q 041121 438 NKLNGAVPE-EIMDLVGLVALNLSRNHLT-----GQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNN 511 (574)
Q Consensus 438 n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~-----~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~ 511 (574)
|.+++..+. .+..+++|++|+|++|.++ +..+..|.++++|++|+|++|++++..+..|..+++|+.|+|++|+
T Consensus 436 N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 515 (844)
T 3j0a_A 436 NRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNR 515 (844)
T ss_dssp CCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCC
T ss_pred CcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCC
Confidence 999855443 4567899999999999997 3445678899999999999999999999999999999999999999
Q ss_pred CcccCCCcchhcccCcccccCCCCC
Q 041121 512 LSGKIPTGTQLQSFNGSVYAGNPEL 536 (574)
Q Consensus 512 l~~~~p~~~~~~~l~~~~l~~Np~~ 536 (574)
|++..|.... ..++.+++++|...
T Consensus 516 l~~l~~~~~~-~~L~~L~Ls~N~l~ 539 (844)
T 3j0a_A 516 LTVLSHNDLP-ANLEILDISRNQLL 539 (844)
T ss_dssp CSSCCCCCCC-SCCCEEEEEEECCC
T ss_pred CCccChhhhh-ccccEEECCCCcCC
Confidence 9954444333 78889999988654
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-43 Score=379.63 Aligned_cols=442 Identities=19% Similarity=0.175 Sum_probs=313.9
Q ss_pred CCcEEECCCCCCCCC-CchhhhcCCCCCCcEEEccCCCCCCCC----CcCCcccEEEccCCcCCCCCCccccCCCCCCEE
Q 041121 13 SLRYLNLEENNLANC-SDWFQVIGKLHSLKTLTSHSCYLRPLS----NISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHL 87 (574)
Q Consensus 13 ~L~~L~Ls~n~i~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 87 (574)
++++|||++|.|+.+ +. +|.++++|++|+|++|+|+.+. .-.++|++|+|++|+++...+..|.++++|++|
T Consensus 53 ~~~~LdLs~N~i~~l~~~---~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSY---SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 129 (635)
T ss_dssp TCCEEECTTSCCCEECTT---TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEE
T ss_pred CCCEEEeeCCCCCCCCHH---HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEE
Confidence 678888888888777 44 6778888888888888777662 223677788888877776666777777788888
Q ss_pred EccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccccC-CC-CCCCCCCCEEEccCccccccc
Q 041121 88 SLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPI-PD-LGGFSSMKRLYLSDNLLNGTI 165 (574)
Q Consensus 88 ~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~-~~-l~~l~~L~~L~L~~n~i~~~~ 165 (574)
++++|++++..+. +|+++++ |++|++++|.++... +. +..+++|++|++++|++++..
T Consensus 130 ~Ls~N~l~~l~~~-------------------~~~~L~~-L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 189 (635)
T 4g8a_A 130 VAVETNLASLENF-------------------PIGHLKT-LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 189 (635)
T ss_dssp ECTTSCCCCSTTC-------------------CCTTCTT-CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred ECCCCcCCCCChh-------------------hhhcCcc-cCeeccccCccccCCCchhhccchhhhhhcccCccccccc
Confidence 7777777754433 4556666 777777777666432 33 566677777777777766666
Q ss_pred chhhhccCCC----CEEEccCCCCCcccCccccc----------------------------------------------
Q 041121 166 NKSIGQIFKL----EITCLSQNSLTDLANIQIKG---------------------------------------------- 195 (574)
Q Consensus 166 ~~~~~~l~~L----~~L~Ls~N~l~~l~~~~~~~---------------------------------------------- 195 (574)
+..|..++++ ..++++.|.++.++...+..
T Consensus 190 ~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~ 269 (635)
T 4g8a_A 190 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 269 (635)
T ss_dssp GGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC
T ss_pred cccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccc
Confidence 6665554433 24556666555332211100
Q ss_pred ---------------------------cCCchhhcCCCCCCeEeccCCcccCCCCC-CCCCCcEEEcCCCcccccccccc
Q 041121 196 ---------------------------KLPDLSSRFGTSNPGIDISSNHFEGPIPP-LPSNSSFLNLSKNRFSRSISLCS 247 (574)
Q Consensus 196 ---------------------------~lp~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~L~~L~L~~n~i~~~~~~~~ 247 (574)
..+.. +.....++.+.+..+.+....+. ....++.|++.+|.+......
T Consensus 270 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-- 346 (635)
T 4g8a_A 270 FDKSALEGLCNLTIEEFRLAYLDYYLDGIIDL-FNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL-- 346 (635)
T ss_dssp CCTTTTGGGGGSEEEEEEEECCCSCEEECTTT-TGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCC--
T ss_pred ccccccccccchhhhhhhhhhhcccccchhhh-hhhhcccccccccccccccccccccchhhhhhhcccccccCcCcc--
Confidence 00000 22334455556555555443221 256889999999988776553
Q ss_pred cCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCccccc--CCCcccccccCccccccccccccCccceeeeccccc
Q 041121 248 ISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSG--RIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQ 325 (574)
Q Consensus 248 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~ 325 (574)
.+..|+.+++..|.+.... .+..+++|+.+++++|.+.. ..+..+..+.++
T Consensus 347 -~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L------------------------ 399 (635)
T 4g8a_A 347 -KLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISL------------------------ 399 (635)
T ss_dssp -BCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCC------------------------
T ss_pred -cchhhhhcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhh------------------------
Confidence 3578889999998876432 34578899999999998863 344455556666
Q ss_pred cccccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCC-ccccccccCccccCCCCccccccccccCCCccc
Q 041121 326 TFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIP-KCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVH 404 (574)
Q Consensus 326 ~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~ 404 (574)
+.+++..+.+... +..+..+++|+.++++.++.....+ ..|..+..++.++++.|.+...
T Consensus 400 -------~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~----------- 460 (635)
T 4g8a_A 400 -------KYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA----------- 460 (635)
T ss_dssp -------CEEECCSCSEEEE-CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEEC-----------
T ss_pred -------hhhhccccccccc-cccccccccccchhhhhccccccccccccccccccccccccccccccc-----------
Confidence 7777777777643 3456778888888888877664443 4577778888888777765422
Q ss_pred cccccCcccccccCCCcccccccCcccEEEccCCcCC-CCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeC
Q 041121 405 HYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLN-GAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDL 483 (574)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 483 (574)
.+..+..++.|+.|++++|.+. ...|..|..+++|++|+|++|+++++.|..|.++++|++|+|
T Consensus 461 ---------------~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~L 525 (635)
T 4g8a_A 461 ---------------FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 525 (635)
T ss_dssp ---------------CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred ---------------cccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEEC
Confidence 2233456778899999999753 456788999999999999999999999999999999999999
Q ss_pred CCCcccccCCCCccCCCCCCEEeccCCcCcccCCCcch-h-cccCcccccCCCCCCCCCC
Q 041121 484 SRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTGTQ-L-QSFNGSVYAGNPELCGLPL 541 (574)
Q Consensus 484 ~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~-~-~~l~~~~l~~Np~~c~~~l 541 (574)
++|+|++..+..|.++++|++|+|++|+|++..|.... + .+++.+++++|||.|+|.+
T Consensus 526 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~ 585 (635)
T 4g8a_A 526 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 585 (635)
T ss_dssp TTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred CCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence 99999998899999999999999999999977777643 3 6789999999999999985
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-43 Score=374.98 Aligned_cols=350 Identities=18% Similarity=0.186 Sum_probs=276.1
Q ss_pred hcCCCCCCcEEEccCCCCCC------------------CC---C--cCCcccEEEccCCcCCCCCCccccCCCCCCEEEc
Q 041121 33 VIGKLHSLKTLTSHSCYLRP------------------LS---N--ISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSL 89 (574)
Q Consensus 33 ~~~~l~~L~~L~l~~n~l~~------------------~~---~--~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 89 (574)
+|+++++|++|++++|.+++ ++ . -.++|++|++++|.+.+.+|..+.++++|++|++
T Consensus 201 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 280 (636)
T 4eco_A 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV 280 (636)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEEC
T ss_pred HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEEC
Confidence 67778888888888888777 41 1 2367888888888877778888888888888888
Q ss_pred cCCc-Ccc-CchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccccCC--CCCCCCCCCEEEccCccccccc
Q 041121 90 MFNE-LEG-GIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIP--DLGGFSSMKRLYLSDNLLNGTI 165 (574)
Q Consensus 90 ~~n~-l~~-~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~--~l~~l~~L~~L~L~~n~i~~~~ 165 (574)
++|+ +++ .+|..++.+. .+..+++ |++|++++|+++.++. .+.++++|++|++++|++.+.+
T Consensus 281 s~n~~l~~~~lp~~~~~L~-------------~~~~l~~-L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~i 346 (636)
T 4eco_A 281 ACNRGISGEQLKDDWQALA-------------DAPVGEK-IQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKL 346 (636)
T ss_dssp TTCTTSCHHHHHHHHHHHH-------------HSGGGGT-CCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEEC
T ss_pred cCCCCCccccchHHHHhhh-------------ccccCCC-CCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccch
Confidence 8887 776 6776555431 2334477 9999999999995555 4889999999999999999888
Q ss_pred chhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCC-CCeEeccCCcccCCCCCC-----CCCCcEEEcCCCcc
Q 041121 166 NKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTS-NPGIDISSNHFEGPIPPL-----PSNSSFLNLSKNRF 239 (574)
Q Consensus 166 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~-L~~L~l~~n~l~~~~~~~-----~~~L~~L~L~~n~i 239 (574)
| .|..+++|++|++++|.++. +|.. +..+++ |+.|++++|.++ .+|.. +++|++|++++|.+
T Consensus 347 p-~~~~l~~L~~L~L~~N~l~~---------lp~~-l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l 414 (636)
T 4eco_A 347 P-AFGSEIKLASLNLAYNQITE---------IPAN-FCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEI 414 (636)
T ss_dssp C-CCEEEEEESEEECCSSEEEE---------CCTT-SEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCT
T ss_pred h-hhCCCCCCCEEECCCCcccc---------ccHh-hhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcC
Confidence 8 89999999999999998773 3443 566777 999999999998 44543 23799999999999
Q ss_pred ccccccccc-------CCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCccccccc-------Cccccc
Q 041121 240 SRSISLCSI-------SGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQ-------NIQTQF 305 (574)
Q Consensus 240 ~~~~~~~~~-------~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-------~L~~l~ 305 (574)
.+..+..+. .+++|++|++++|.++...+..+..+++|++|++++|.++...+..+.... +|
T Consensus 415 ~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L---- 490 (636)
T 4eco_A 415 GSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLL---- 490 (636)
T ss_dssp TTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGC----
T ss_pred CCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCc----
Confidence 988776666 678999999999999965555677799999999999999943333443322 55
Q ss_pred cccccccCccceeeeccccccccccccceEEecCceeccCCChhhc--CCCCCCEEEccCCcccccCCccccccccCccc
Q 041121 306 TQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLC--QFAFLQVLDLSLNNISGKIPKCFNNFTAMTQE 383 (574)
Q Consensus 306 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l 383 (574)
+.+++++|++. .+|..+. .+++|++|+|++|++++ +|..+..+++|
T Consensus 491 ---------------------------~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L--- 538 (636)
T 4eco_A 491 ---------------------------TSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTL--- 538 (636)
T ss_dssp ---------------------------CEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSC---
T ss_pred ---------------------------cEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCC---
Confidence 88999999998 5667776 88999999999999986 67666555554
Q ss_pred cCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEc------cCCcCCCCCcHhhhhcCCCCEE
Q 041121 384 RSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLEL------SSNKLNGAVPEEIMDLVGLVAL 457 (574)
Q Consensus 384 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L------s~n~l~~~~~~~~~~l~~L~~L 457 (574)
+.|++ ++|.+.+.+|..+..+++|++|
T Consensus 539 -----------------------------------------------~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L 571 (636)
T 4eco_A 539 -----------------------------------------------KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQL 571 (636)
T ss_dssp -----------------------------------------------CEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEE
T ss_pred -----------------------------------------------CEEECCCCcccccCcccccChHHHhcCCCCCEE
Confidence 66766 5688888999999999999999
Q ss_pred eCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCC
Q 041121 458 NLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPS 494 (574)
Q Consensus 458 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~ 494 (574)
+|++|+++ .+|..+. ++|++|++++|++......
T Consensus 572 ~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~~~~ 605 (636)
T 4eco_A 572 QIGSNDIR-KVNEKIT--PNISVLDIKDNPNISIDLS 605 (636)
T ss_dssp ECCSSCCC-BCCSCCC--TTCCEEECCSCTTCEEECT
T ss_pred ECCCCcCC-ccCHhHh--CcCCEEECcCCCCccccHH
Confidence 99999995 6666655 8999999999999865433
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-44 Score=377.89 Aligned_cols=452 Identities=18% Similarity=0.142 Sum_probs=308.0
Q ss_pred cEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCCC----CcCCcccEEEccCCcCCCCCCccccCCCCCCEEEcc
Q 041121 15 RYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLS----NISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLM 90 (574)
Q Consensus 15 ~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 90 (574)
++||+++|+++.+|. .+. ++|++|++++|+++.+. .-.++|++|++++|++++..|..|..+++|++|+++
T Consensus 3 ~~l~ls~n~l~~ip~---~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 77 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPK---DLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS 77 (520)
T ss_dssp CEEECTTSCCSSCCC---SCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECC
T ss_pred ceEecCCCCcccccc---ccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecC
Confidence 578999999998866 444 88999999999888772 234788899999998887778888889999999998
Q ss_pred CCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCccccc-CCC-CCCCCCCCEEEccCcccccccchh
Q 041121 91 FNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGP-IPD-LGGFSSMKRLYLSDNLLNGTINKS 168 (574)
Q Consensus 91 ~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~-~~~-l~~l~~L~~L~L~~n~i~~~~~~~ 168 (574)
+|+++ .+|. . .+++ |++|++++|++++. .|. |+++++|++|++++|.+.+ ..
T Consensus 78 ~N~l~-~lp~-------------------~--~l~~-L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~ 131 (520)
T 2z7x_B 78 HNKLV-KISC-------------------H--PTVN-LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SS 131 (520)
T ss_dssp SSCCC-EEEC-------------------C--CCCC-CSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GG
T ss_pred CCcee-ecCc-------------------c--ccCC-ccEEeccCCccccccchhhhccCCcceEEEecCcccch---hh
Confidence 88887 3442 2 4566 88888888888763 344 8888888888888888864 45
Q ss_pred hhccCCC--CEEEccCCCC--CcccCccccccCCchhhcCCC-CCCeEeccCCcccCCCCCC----CCCCcEEEcCCCc-
Q 041121 169 IGQIFKL--EITCLSQNSL--TDLANIQIKGKLPDLSSRFGT-SNPGIDISSNHFEGPIPPL----PSNSSFLNLSKNR- 238 (574)
Q Consensus 169 ~~~l~~L--~~L~Ls~N~l--~~l~~~~~~~~lp~~~~~~~~-~L~~L~l~~n~l~~~~~~~----~~~L~~L~L~~n~- 238 (574)
|..+++| ++|++++|.+ ... .|.. +..+. ....+++++|.+.+.++.. +++|+.+++++|.
T Consensus 132 ~~~l~~L~L~~L~l~~n~l~~~~~--------~~~~-l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~ 202 (520)
T 2z7x_B 132 VLPIAHLNISKVLLVLGETYGEKE--------DPEG-LQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLE 202 (520)
T ss_dssp GGGGTTSCEEEEEEEECTTTTSSC--------CTTT-TTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCS
T ss_pred ccccccceeeEEEeeccccccccc--------cccc-ccccccceEEEEeccCcchhhhhhhhhhcccceeecccccccc
Confidence 6667777 8888888876 221 1111 11111 1223455556555544432 4556666666664
Q ss_pred ------ccccccccccCCCCccEEECCCCCCCCCCCcch---hcCCCCcEEEccCcccccCCCccc-----ccccCcccc
Q 041121 239 ------FSRSISLCSISGSKLTYIDLSSNLLSGKLPDCW---WMFDSLVILDLGNNSFSGRIPDSM-----GFLQNIQTQ 304 (574)
Q Consensus 239 ------i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~-----~~l~~L~~l 304 (574)
+.+..+ .+..+++|++|++++|.+++..+..+ ...++|++|++++|.+++.+|..+ ..+++|+.+
T Consensus 203 ~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l 281 (520)
T 2z7x_B 203 DNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIH 281 (520)
T ss_dssp TTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEE
T ss_pred ccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEec
Confidence 433333 44455666666666655543211111 013456666666666665555554 444444333
Q ss_pred ccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCcccc
Q 041121 305 FTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQER 384 (574)
Q Consensus 305 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~ 384 (574)
+.....-..+. ......++....+.+++++|.+.... .+..+++|++|++++|++++..|..+..+++|+.++
T Consensus 282 ~l~~n~~~~p~-----~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 354 (520)
T 2z7x_B 282 QVVSDVFGFPQ-----SYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLI 354 (520)
T ss_dssp EEEECCCCSCT-----HHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEE
T ss_pred cccccceecch-----hhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEE
Confidence 21110000000 00000000001188899999876533 125788999999999999988888899999999999
Q ss_pred CCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcH-hhhhcCCCCEEeCCCCc
Q 041121 385 SSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPE-EIMDLVGLVALNLSRNH 463 (574)
Q Consensus 385 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~ 463 (574)
+++|.+..++. .+..+..+++|++|++++|.+++.+|. .+..+++|++|++++|+
T Consensus 355 L~~N~l~~l~~------------------------~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~ 410 (520)
T 2z7x_B 355 LQMNQLKELSK------------------------IAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI 410 (520)
T ss_dssp CCSSCCCBHHH------------------------HHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSC
T ss_pred ccCCccCcccc------------------------chHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCC
Confidence 99888753211 112345688899999999999874665 48889999999999999
Q ss_pred CcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcccCCCc--chhcccCcccccCCCCCCCCCC
Q 041121 464 LTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTG--TQLQSFNGSVYAGNPELCGLPL 541 (574)
Q Consensus 464 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~--~~~~~l~~~~l~~Np~~c~~~l 541 (574)
+++..+..+. ++|++|++++|+++ .+|..+..+++|+.|++++|+|+ .+|.. ..++.++.+++++||+.|+|++
T Consensus 411 l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 411 LTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp CCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred CCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCCc
Confidence 9877776654 79999999999999 66776779999999999999999 67764 4578899999999999999986
Q ss_pred C
Q 041121 542 P 542 (574)
Q Consensus 542 ~ 542 (574)
.
T Consensus 487 ~ 487 (520)
T 2z7x_B 487 I 487 (520)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-42 Score=379.32 Aligned_cols=448 Identities=16% Similarity=0.137 Sum_probs=340.7
Q ss_pred CCCcEEECCCCCCCCC-CchhhhcCCCCCCcEEEc-cCCCCCCC--CC---c----------------------------
Q 041121 12 HSLRYLNLEENNLANC-SDWFQVIGKLHSLKTLTS-HSCYLRPL--SN---I---------------------------- 56 (574)
Q Consensus 12 ~~L~~L~Ls~n~i~~~-~~~~~~~~~l~~L~~L~l-~~n~l~~~--~~---~---------------------------- 56 (574)
.+++.|+|++++++.. |. +|+++++|++|+| ++|.+.+. .. .
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~---~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~ 399 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPD---AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLN 399 (876)
T ss_dssp SCEEEEECTTTCCEEEECG---GGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGG
T ss_pred CCEEEEECccCCCCCcCch---HHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchh
Confidence 5799999999999877 77 8999999999999 77754332 00 0
Q ss_pred ----------------------CCcccEEEcc--CCcCCCCCCccccCCCCCCEEEccCCcCccC-chhhhhcccCCCCC
Q 041121 57 ----------------------SSNFVSIDLS--FNQLQGSIPDSSQHMVYLEHLSLMFNELEGG-IPKFFGNMLNLSDN 111 (574)
Q Consensus 57 ----------------------~~~L~~L~Ls--~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~n 111 (574)
...++.+.+. .|++++ +|..+.++++|++|+|++|.+++. ++..+. ..+.|
T Consensus 400 ~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~---~~s~n 475 (876)
T 4ecn_A 400 LSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWE---DANSD 475 (876)
T ss_dssp SCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCS---CTTSH
T ss_pred hhHHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCccccccc---ccccc
Confidence 0122333333 377876 889999999999999999999872 221111 11223
Q ss_pred cccc-ccccccc--cccccCcEEEccCCcccccCCC-CCCCCCCCEEEccCcc-ccc-ccchhhhccC-------CCCEE
Q 041121 112 KLAI-IQNMSSG--CLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNL-LNG-TINKSIGQIF-------KLEIT 178 (574)
Q Consensus 112 ~l~~-l~~~~~~--~l~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~L~~n~-i~~-~~~~~~~~l~-------~L~~L 178 (574)
.+++ +|. .+. ++++ |++|+|++|++.+.+|. |.++++|++|++++|+ +++ .+|..+..++ +|++|
T Consensus 476 ~~~g~iP~-~l~f~~L~~-L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L 553 (876)
T 4ecn_A 476 YAKQYENE-ELSWSNLKD-LTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF 553 (876)
T ss_dssp HHHHHTTS-CCCGGGCTT-CCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEE
T ss_pred cccccCCh-hhhhccCCC-CCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEE
Confidence 3333 565 555 8998 99999999999988887 9999999999999998 987 7888777766 99999
Q ss_pred EccCCCCCcccCccccccCCc-hhhcCCCCCCeEeccCCcccCCCCCC--CCCCcEEEcCCCcccccccccccCCCC-cc
Q 041121 179 CLSQNSLTDLANIQIKGKLPD-LSSRFGTSNPGIDISSNHFEGPIPPL--PSNSSFLNLSKNRFSRSISLCSISGSK-LT 254 (574)
Q Consensus 179 ~Ls~N~l~~l~~~~~~~~lp~-~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~L~~n~i~~~~~~~~~~~~~-L~ 254 (574)
++++|.++. +|. ..+..+++|+.|++++|.++ .+|.. +++|+.|+|++|.+.. .+..+..+++ |+
T Consensus 554 ~Ls~N~L~~---------ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l~~-lp~~l~~l~~~L~ 622 (876)
T 4ecn_A 554 YMGYNNLEE---------FPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIEE-IPEDFCAFTDQVE 622 (876)
T ss_dssp ECCSSCCCB---------CCCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSCCSC-CCTTSCEECTTCC
T ss_pred EeeCCcCCc---------cCChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcceEEECcCCcccc-chHHHhhccccCC
Confidence 999999874 444 12678899999999999999 56544 7889999999999994 4445777888 99
Q ss_pred EEECCCCCCCCCCCcchhcCCC--CcEEEccCcccccCCCcccc-----cccCccccccccccccCccceeeeccccccc
Q 041121 255 YIDLSSNLLSGKLPDCWWMFDS--LVILDLGNNSFSGRIPDSMG-----FLQNIQTQFTQQQFNRRTVFIVWELLTTQTF 327 (574)
Q Consensus 255 ~L~L~~n~l~~~~~~~~~~l~~--L~~L~L~~N~l~~~~~~~~~-----~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~ 327 (574)
+|++++|.++ .+|..+..++. |+.|++++|.+.+..|.... .+++|
T Consensus 623 ~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L-------------------------- 675 (876)
T 4ecn_A 623 GLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINA-------------------------- 675 (876)
T ss_dssp EEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCE--------------------------
T ss_pred EEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCc--------------------------
Confidence 9999999999 67888777654 99999999999876654322 22345
Q ss_pred cccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCc-cccc-------cccCccccCCCCccccccccccC
Q 041121 328 ESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPK-CFNN-------FTAMTQERSSDPTIKVYYYTFVG 399 (574)
Q Consensus 328 ~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~-------l~~L~~l~l~~~~~~~~~~~~~~ 399 (574)
+.+++++|.+....+..+..+++|+.|+|++|+++ .+|. .+.. +++|+.|++++|.+..++..+.
T Consensus 676 -----~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~- 748 (876)
T 4ecn_A 676 -----STVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFR- 748 (876)
T ss_dssp -----EEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGS-
T ss_pred -----CEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCccchHHhh-
Confidence 88999999999554445568999999999999999 4544 3332 3388888888887653221111
Q ss_pred CCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCC------CcCcccCCcccc
Q 041121 400 PPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSR------NHLTGQNSPKIG 473 (574)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~------N~l~~~~~~~~~ 473 (574)
...+++|+.|+|++|.+++ +|..+..+++|++|+|++ |++.+.+|..|.
T Consensus 749 ------------------------~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~ 803 (876)
T 4ecn_A 749 ------------------------ATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGIT 803 (876)
T ss_dssp ------------------------TTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGG
T ss_pred ------------------------hccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHh
Confidence 0267889999999999985 788888999999999976 778888899999
Q ss_pred CCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcccCCCcc-hhcccCcccccCCCCCC--CCCC
Q 041121 474 QLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTGT-QLQSFNGSVYAGNPELC--GLPL 541 (574)
Q Consensus 474 ~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~-~~~~l~~~~l~~Np~~c--~~~l 541 (574)
++++|+.|+|++|++. .+|..+. ++|+.|+|++|++...-+... .........+.+|++.+ +|+-
T Consensus 804 ~L~~L~~L~Ls~N~L~-~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~I~gC~~ 871 (876)
T 4ecn_A 804 TCPSLIQLQIGSNDIR-KVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDA 871 (876)
T ss_dssp GCSSCCEEECCSSCCC-BCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSEEESCGG
T ss_pred cCCCCCEEECCCCCCC-ccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccccCCCCC
Confidence 9999999999999994 6676665 589999999999984444332 23344556677777665 7653
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-41 Score=372.92 Aligned_cols=415 Identities=17% Similarity=0.192 Sum_probs=337.2
Q ss_pred CcccEEEccCCcCCCCCCccccCCCCCCEEEc-cCCcCccCchhhhhc--------------------------------
Q 041121 58 SNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSL-MFNELEGGIPKFFGN-------------------------------- 104 (574)
Q Consensus 58 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L-~~n~l~~~~~~~~~~-------------------------------- 104 (574)
.+++.|+|++|++.+.+|.+++.+++|++|+| ++|.+.|..|.....
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57899999999999999999999999999999 888876652211000
Q ss_pred ----------------------cc--CC--CCCccccccccccccccccCcEEEccCCcccc------------------
Q 041121 105 ----------------------ML--NL--SDNKLAIIQNMSSGCLKNSLESLHLEVNHFTG------------------ 140 (574)
Q Consensus 105 ----------------------l~--~L--~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~------------------ 140 (574)
+. .+ ..|.+++||. .+.++++ |++|+|++|++++
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~-~l~~L~~-L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~ 480 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISK-AIQRLTK-LQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECG-GGGGCTT-CCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhH-HHhcCCC-CCEEECcCCcCCCCccccccccccccccccc
Confidence 00 11 3478888998 8999999 9999999999998
Q ss_pred cCCCCC--CCCCCCEEEccCcccccccchhhhccCCCCEEEccCCC-CCc--ccCccccccCCchhhcCCCCCCeEeccC
Q 041121 141 PIPDLG--GFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNS-LTD--LANIQIKGKLPDLSSRFGTSNPGIDISS 215 (574)
Q Consensus 141 ~~~~l~--~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~--l~~~~~~~~lp~~~~~~~~~L~~L~l~~ 215 (574)
+++.+. ++++|++|+|++|.+.+.+|..|.++++|++|++++|+ ++. ++... +.++. .+..+++|+.|++++
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i--~~L~~-~~~~l~~L~~L~Ls~ 557 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADW--TRLAD-DEDTGPKIQIFYMGY 557 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHH--HHHHH-CTTTTTTCCEEECCS
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHH--Hhhhh-cccccCCccEEEeeC
Confidence 444477 99999999999999999999999999999999999997 763 32110 01110 135567999999999
Q ss_pred CcccCCCCC-----CCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCC-CcEEEccCccccc
Q 041121 216 NHFEGPIPP-----LPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDS-LVILDLGNNSFSG 289 (574)
Q Consensus 216 n~l~~~~~~-----~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~N~l~~ 289 (574)
|.++ .+|. .+++|+.|+|++|.+..++ .+..+++|++|++++|.++ .+|..+..+++ |+.|++++|.++
T Consensus 558 N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~- 632 (876)
T 4ecn_A 558 NNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK- 632 (876)
T ss_dssp SCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC--CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-
T ss_pred CcCC-ccCChhhhhcCCCCCEEECCCCCcccch--hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-
Confidence 9999 5666 2889999999999999555 7889999999999999999 78888999999 999999999999
Q ss_pred CCCcccccccC--ccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhh---c--CCCCCCEEEcc
Q 041121 290 RIPDSMGFLQN--IQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQL---C--QFAFLQVLDLS 362 (574)
Q Consensus 290 ~~~~~~~~l~~--L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~---~--~~~~L~~L~L~ 362 (574)
.+|..+..+.. | +.+++++|.+.+..|... . .+++|+.|+|+
T Consensus 633 ~lp~~~~~~~~~~L-------------------------------~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls 681 (876)
T 4ecn_A 633 YIPNIFNAKSVYVM-------------------------------GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLS 681 (876)
T ss_dssp SCCSCCCTTCSSCE-------------------------------EEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECC
T ss_pred cCchhhhccccCCC-------------------------------CEEECcCCcCCCccccchhhhccccCCCcCEEEcc
Confidence 77777766543 6 889999999988665322 2 34589999999
Q ss_pred CCcccccCCc-cccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCC
Q 041121 363 LNNISGKIPK-CFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLN 441 (574)
Q Consensus 363 ~n~l~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 441 (574)
+|.++ .+|. .+..+++|+.|++++|.+..++...... ....+..+++|+.|+|++|.++
T Consensus 682 ~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~-------------------~~~~l~nl~~L~~L~Ls~N~L~ 741 (876)
T 4ecn_A 682 YNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKP-------------------KDGNYKNTYLLTTIDLRFNKLT 741 (876)
T ss_dssp SSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSC-------------------TTSCCTTGGGCCEEECCSSCCC
T ss_pred CCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhcc-------------------ccccccccCCccEEECCCCCCc
Confidence 99999 4554 4568899999999999876332221110 0011234568999999999999
Q ss_pred CCCcHhhh--hcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCC------CcccccCCCCccCCCCCCEEeccCCcCc
Q 041121 442 GAVPEEIM--DLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSR------NQLVGGIPSSLSPLSVLSVMDLSYNNLS 513 (574)
Q Consensus 442 ~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~------N~i~~~~~~~l~~l~~L~~L~Ls~N~l~ 513 (574)
.+|..+. .+++|++|+|++|++++ +|..+..+++|+.|+|++ |++.+.+|..|..+++|+.|+|++|+|
T Consensus 742 -~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L- 818 (876)
T 4ecn_A 742 -SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI- 818 (876)
T ss_dssp -CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-
T ss_pred -cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-
Confidence 7888886 99999999999999997 688899999999999977 788889999999999999999999999
Q ss_pred ccCCCcchhcccCcccccCCCCCC
Q 041121 514 GKIPTGTQLQSFNGSVYAGNPELC 537 (574)
Q Consensus 514 ~~~p~~~~~~~l~~~~l~~Np~~c 537 (574)
+.+|.... +.++.+++++||+..
T Consensus 819 ~~Ip~~l~-~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 819 RKVDEKLT-PQLYILDIADNPNIS 841 (876)
T ss_dssp CBCCSCCC-SSSCEEECCSCTTCE
T ss_pred CccCHhhc-CCCCEEECCCCCCCc
Confidence 59998743 789999999999754
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-42 Score=367.28 Aligned_cols=423 Identities=18% Similarity=0.144 Sum_probs=315.4
Q ss_pred hhhhcCCCCCcEEECCCCCCCCC-CchhhhcCCCCCCcEEEccCCCCCCCC----CcCCcccEEEccCCcCCCC-CCccc
Q 041121 5 LMRSLRLHSLRYLNLEENNLANC-SDWFQVIGKLHSLKTLTSHSCYLRPLS----NISSNFVSIDLSFNQLQGS-IPDSS 78 (574)
Q Consensus 5 ~~~l~~l~~L~~L~Ls~n~i~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~L~~L~Ls~n~i~~~-~~~~~ 78 (574)
+..|.++++|++|++++|.++.+ +. +|..+++|++|++++|+++... .-.++|++|++++|.+++. .|..+
T Consensus 43 ~~~~~~l~~L~~L~Ls~n~i~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 119 (549)
T 2z81_A 43 HGDLRACANLQVLILKSSRINTIEGD---AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF 119 (549)
T ss_dssp SSTTSSCTTCCEEECTTSCCCEECTT---TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSC
T ss_pred hhhhhcCCcccEEECCCCCcCccChh---hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhh
Confidence 56799999999999999999998 56 8999999999999999999872 2348999999999999863 57789
Q ss_pred cCCCCCCEEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccccCCC-CCCCCCCCEEEcc
Q 041121 79 QHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLS 157 (574)
Q Consensus 79 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~L~ 157 (574)
..+++|++|++++|.+.+.+|.. .+.++++ |++|++++|++++..+. +..+++|++|+++
T Consensus 120 ~~l~~L~~L~L~~n~~~~~~~~~------------------~~~~l~~-L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 180 (549)
T 2z81_A 120 PNLTNLQTLRIGNVETFSEIRRI------------------DFAGLTS-LNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180 (549)
T ss_dssp TTCTTCCEEEEEESSSCCEECTT------------------TTTTCCE-EEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred hccCCccEEECCCCccccccCHh------------------hhhcccc-cCeeeccCCcccccChhhhhccccCceEecc
Confidence 99999999999999844444421 4445555 66666666666665554 6666666666666
Q ss_pred CcccccccchhhhccCCCCEEEccCCCCCcccCccc-------------------cc----cCCchhhcCCCCCCeEecc
Q 041121 158 DNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQI-------------------KG----KLPDLSSRFGTSNPGIDIS 214 (574)
Q Consensus 158 ~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~-------------------~~----~lp~~~~~~~~~L~~L~l~ 214 (574)
+|.+.......+..+++|++|++++|.++.+..... .+ .++.. ...+++++.++++
T Consensus 181 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~-~~~~~~L~~l~l~ 259 (549)
T 2z81_A 181 LSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKL-LRYILELSEVEFD 259 (549)
T ss_dssp CSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGG-GGGCTTCCEEEEE
T ss_pred cCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHH-hhhhccccccccc
Confidence 666653333333456666666666666654321000 00 01111 2345566666776
Q ss_pred CCcccCCC---------CCCCCCCcEEEcCCCcccccccc-----cccCCCCccEEECCCCCCCCCCCcch-hcCCCCcE
Q 041121 215 SNHFEGPI---------PPLPSNSSFLNLSKNRFSRSISL-----CSISGSKLTYIDLSSNLLSGKLPDCW-WMFDSLVI 279 (574)
Q Consensus 215 ~n~l~~~~---------~~~~~~L~~L~L~~n~i~~~~~~-----~~~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~ 279 (574)
+|.+.+.. ...+.+++.+++.++.+...... .+...++|++|++++|.+. .+|..+ ..+++|++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~ 338 (549)
T 2z81_A 260 DCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEF 338 (549)
T ss_dssp SCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCE
T ss_pred cccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccE
Confidence 66665421 12256777777777766543210 1123468999999999998 556554 68999999
Q ss_pred EEccCcccccCCC---cccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCC--hhhcCCC
Q 041121 280 LDLGNNSFSGRIP---DSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTP--FQLCQFA 354 (574)
Q Consensus 280 L~L~~N~l~~~~~---~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~--~~~~~~~ 354 (574)
|++++|.+++..| ..+..+++| +.+++++|++++..+ ..+..++
T Consensus 339 L~Ls~N~l~~~~~~~~~~~~~l~~L-------------------------------~~L~Ls~N~l~~~~~~~~~~~~l~ 387 (549)
T 2z81_A 339 LDLSENLMVEEYLKNSACKGAWPSL-------------------------------QTLVLSQNHLRSMQKTGEILLTLK 387 (549)
T ss_dssp EECCSSCCCHHHHHHHTCTTSSTTC-------------------------------CEEECTTSCCCCHHHHHHHGGGCT
T ss_pred EEccCCccccccccchhhhhccccC-------------------------------cEEEccCCcccccccchhhhhcCC
Confidence 9999999987653 346677888 899999999986543 4688999
Q ss_pred CCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEE
Q 041121 355 FLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLE 434 (574)
Q Consensus 355 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 434 (574)
+|++|++++|+++ .+|..+..+++|+.+++++|.+..++.. .+++|++|+
T Consensus 388 ~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~-----------------------------~~~~L~~L~ 437 (549)
T 2z81_A 388 NLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTC-----------------------------IPQTLEVLD 437 (549)
T ss_dssp TCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCTT-----------------------------SCTTCSEEE
T ss_pred CCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccccch-----------------------------hcCCceEEE
Confidence 9999999999999 6788888999999999999887532211 124689999
Q ss_pred ccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcc
Q 041121 435 LSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSG 514 (574)
Q Consensus 435 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~ 514 (574)
+++|++++.. ..+++|++|+|++|+++ .+|. ...+++|++|++++|++++..|+.|..+++|+.|++++|++++
T Consensus 438 Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 511 (549)
T 2z81_A 438 VSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 511 (549)
T ss_dssp CCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCC
T ss_pred CCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccC
Confidence 9999998643 57899999999999999 4554 4679999999999999999999999999999999999999998
Q ss_pred cCCC
Q 041121 515 KIPT 518 (574)
Q Consensus 515 ~~p~ 518 (574)
.+|.
T Consensus 512 ~~~~ 515 (549)
T 2z81_A 512 SCPR 515 (549)
T ss_dssp CHHH
T ss_pred CCcc
Confidence 8774
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-41 Score=349.59 Aligned_cols=384 Identities=20% Similarity=0.164 Sum_probs=277.1
Q ss_pred CcEEEccCCCCCCCCCcCCcccEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccCchhhhhcccCCCCCcccccccc
Q 041121 40 LKTLTSHSCYLRPLSNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNM 119 (574)
Q Consensus 40 L~~L~l~~n~l~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~ 119 (574)
-+.++.++++++.++.+.++|++|++++|.+++..|..|.++++|++|++++|.+.+.++..
T Consensus 12 ~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~------------------ 73 (455)
T 3v47_A 12 GYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNN------------------ 73 (455)
T ss_dssp TTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTT------------------
T ss_pred ccccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcc------------------
Confidence 34678888888888777788999999999999888999999999999999999886544332
Q ss_pred ccccccccCcEEEccCCcccccCCC-CCCCCCCCEEEccCcccccccchh--hhccCCCCEEEccCCCCCcccCcccccc
Q 041121 120 SSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNLLNGTINKS--IGQIFKLEITCLSQNSLTDLANIQIKGK 196 (574)
Q Consensus 120 ~~~~l~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~L~~n~i~~~~~~~--~~~l~~L~~L~Ls~N~l~~l~~~~~~~~ 196 (574)
+|.++++ |++|++++|++++..+. |.++++|++|++++|.+++..+.. |..+++|++|++++|.++.+.
T Consensus 74 ~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~------- 145 (455)
T 3v47_A 74 TFRGLSS-LIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ------- 145 (455)
T ss_dssp TTTTCTT-CCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCC-------
T ss_pred ccccccc-CCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccC-------
Confidence 6777888 99999999999988776 999999999999999998755544 889999999999999887542
Q ss_pred CCchhhcCCCCCCeEeccCCcccCCCCCCC-----CCCcEEEcCCCcccccccccc--------cCCCCccEEECCCCCC
Q 041121 197 LPDLSSRFGTSNPGIDISSNHFEGPIPPLP-----SNSSFLNLSKNRFSRSISLCS--------ISGSKLTYIDLSSNLL 263 (574)
Q Consensus 197 lp~~~~~~~~~L~~L~l~~n~l~~~~~~~~-----~~L~~L~L~~n~i~~~~~~~~--------~~~~~L~~L~L~~n~l 263 (574)
|...+..+++|++|++++|.+++..+..+ ..++.+++++|.+.+..+..+ ..+++|++|++++|.+
T Consensus 146 -~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 224 (455)
T 3v47_A 146 -PASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGF 224 (455)
T ss_dssp -CCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCC
T ss_pred -cccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcc
Confidence 33225678899999999999988776652 578889999999887665432 2557899999999998
Q ss_pred CCCCCcchhcC---CCCcEEEccCcccccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCc
Q 041121 264 SGKLPDCWWMF---DSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSN 340 (574)
Q Consensus 264 ~~~~~~~~~~l---~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n 340 (574)
++..|..+... ++|+.|++++|...+.... ...++...... + ........+.+++++|
T Consensus 225 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~~----~--------------~~~~~~~L~~L~l~~n 285 (455)
T 3v47_A 225 KESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG-HTNFKDPDNFT----F--------------KGLEASGVKTCDLSKS 285 (455)
T ss_dssp CHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT-CCSSCCCCTTT----T--------------GGGTTSCCCEEECCSS
T ss_pred cccchhhhhccccccceeeEeeccccccccccc-hhhhccCcccc----c--------------ccccccCceEEEecCc
Confidence 87666666554 7899999998876543211 11111100000 0 0000000055555555
Q ss_pred eeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCC
Q 041121 341 KFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSG 420 (574)
Q Consensus 341 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (574)
.+.+..+..+..+++|++|++++|++++..+..|.+
T Consensus 286 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-------------------------------------------- 321 (455)
T 3v47_A 286 KIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG-------------------------------------------- 321 (455)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT--------------------------------------------
T ss_pred cccccchhhcccCCCCCEEECCCCcccccChhHhcC--------------------------------------------
Confidence 555555555555555666666665555444444433
Q ss_pred cccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCC
Q 041121 421 REYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLS 500 (574)
Q Consensus 421 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~ 500 (574)
+++|++|++++|.+++..+..|.++++|++|+|++|++++..|..|.++++|++|++++|++++..++.|..++
T Consensus 322 ------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 395 (455)
T 3v47_A 322 ------LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLT 395 (455)
T ss_dssp ------CTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred ------cccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCC
Confidence 44457788888888766677778888888888888888777777788888888888888888876666777788
Q ss_pred CCCEEeccCCcCcccCCCc
Q 041121 501 VLSVMDLSYNNLSGKIPTG 519 (574)
Q Consensus 501 ~L~~L~Ls~N~l~~~~p~~ 519 (574)
+|+.|++++|++++.+|..
T Consensus 396 ~L~~L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 396 SLQKIWLHTNPWDCSCPRI 414 (455)
T ss_dssp TCCEEECCSSCBCCCTTTT
T ss_pred cccEEEccCCCcccCCCcc
Confidence 8888888888888777754
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-41 Score=359.39 Aligned_cols=449 Identities=16% Similarity=0.159 Sum_probs=277.8
Q ss_pred cEEEccCCCCCCCC-CcCCcccEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccCchhhhhccc-----CCCCCccc
Q 041121 41 KTLTSHSCYLRPLS-NISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNML-----NLSDNKLA 114 (574)
Q Consensus 41 ~~L~l~~n~l~~~~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----~L~~n~l~ 114 (574)
+++++++|+++.++ .+.++|++|++++|.+++..+..|..+++|++|++++|++++..|..|.++. +|++|.++
T Consensus 34 ~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 113 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ 113 (562)
T ss_dssp CEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred cEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC
Confidence 44444444444442 1234444444444444444444444444444444444444443344333332 33344444
Q ss_pred cccccccccccccCcEEEccCCcccccC-CC-CCCCCCCCEEEccCcccccccchhhhccCCC--CEEEccCCCC--Ccc
Q 041121 115 IIQNMSSGCLKNSLESLHLEVNHFTGPI-PD-LGGFSSMKRLYLSDNLLNGTINKSIGQIFKL--EITCLSQNSL--TDL 188 (574)
Q Consensus 115 ~l~~~~~~~l~~~L~~L~L~~n~l~~~~-~~-l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L--~~L~Ls~N~l--~~l 188 (574)
.+|. . .+++ |++|++++|++++.. +. |.++++|++|++++|+++.. .|..+++| ++|++++|.+ +..
T Consensus 114 ~lp~-~--~l~~-L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~ 186 (562)
T 3a79_B 114 NISC-C--PMAS-LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGG 186 (562)
T ss_dssp EECS-C--CCTT-CSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSS
T ss_pred ccCc-c--cccc-CCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccccccccc
Confidence 4444 2 5666 888888888888644 34 88888888888888888753 45555555 8888888877 432
Q ss_pred cCccccccCCchhhcCCC-CCCeEeccCCcccCCCCCC----CCCCcEEEcCCCc-----ccccccccccCCCCccEEEC
Q 041121 189 ANIQIKGKLPDLSSRFGT-SNPGIDISSNHFEGPIPPL----PSNSSFLNLSKNR-----FSRSISLCSISGSKLTYIDL 258 (574)
Q Consensus 189 ~~~~~~~~lp~~~~~~~~-~L~~L~l~~n~l~~~~~~~----~~~L~~L~L~~n~-----i~~~~~~~~~~~~~L~~L~L 258 (574)
....+ ..+. ..-.++++.|.+.+.++.. +.+|+.+++++|. +.+.. ..+...++++.+++
T Consensus 187 ~~~~l---------~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~-~~l~~l~~L~~L~L 256 (562)
T 3a79_B 187 ETESL---------QIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL-SELTRGPTLLNVTL 256 (562)
T ss_dssp SCCEE---------EECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHH-HHHHSCSSCEEEEE
T ss_pred Ccccc---------cccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHH-HHHhccCcceEEEe
Confidence 22111 1111 1114466666666544432 5667777777774 11111 23445667777777
Q ss_pred CCCCCCCCC----CcchhcCCCCcEEEccCcccccCCCccc-----ccccCccccccccccccCccceeeeccccccccc
Q 041121 259 SSNLLSGKL----PDCWWMFDSLVILDLGNNSFSGRIPDSM-----GFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFES 329 (574)
Q Consensus 259 ~~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~~~~~-----~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~ 329 (574)
+++.+.+.. +.. ...++|++|++++|.+++.+|..+ ..++.|+..+.....-..+. -.....++.
T Consensus 257 ~~~~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~-----~~~~~~~~~ 330 (562)
T 3a79_B 257 QHIETTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSK-----EALYSVFAE 330 (562)
T ss_dssp EEEEECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCH-----HHHHHHHHT
T ss_pred cCCcCcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecCh-----hhhhhhhcc
Confidence 666554211 111 123477777777777776666655 33333322211100000000 000000000
Q ss_pred cccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCcccccccc
Q 041121 330 WEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQ 409 (574)
Q Consensus 330 ~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 409 (574)
...+.+++++|.+.... ....+++|++|++++|.+++..|..+.++++|+.+++++|.+..++.
T Consensus 331 ~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------------- 394 (562)
T 3a79_B 331 MNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFK-------------- 394 (562)
T ss_dssp CCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTH--------------
T ss_pred CcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCccc--------------
Confidence 11278899999876432 12678899999999999998888889999999999999888753211
Q ss_pred CcccccccCCCcccccccCcccEEEccCCcCCCCCc-HhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcc
Q 041121 410 DKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVP-EEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQL 488 (574)
Q Consensus 410 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i 488 (574)
.+..+..+++|++|++++|.+++.+| ..+..+++|++|++++|++++..+..+. ++|++|++++|++
T Consensus 395 ----------~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l 462 (562)
T 3a79_B 395 ----------VALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRI 462 (562)
T ss_dssp ----------HHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCC
T ss_pred ----------chhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcC
Confidence 11234567889999999999987344 4588899999999999999876665543 7899999999999
Q ss_pred cccCCCCccCCCCCCEEeccCCcCcccCCCc--chhcccCcccccCCCCCCCCCCC
Q 041121 489 VGGIPSSLSPLSVLSVMDLSYNNLSGKIPTG--TQLQSFNGSVYAGNPELCGLPLP 542 (574)
Q Consensus 489 ~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~--~~~~~l~~~~l~~Np~~c~~~l~ 542 (574)
+ .+|..+..+++|+.|++++|+|+ .+|.. ..++.++.+++++|||.|+|++.
T Consensus 463 ~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 516 (562)
T 3a79_B 463 M-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPGI 516 (562)
T ss_dssp C-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHHHH
T ss_pred c-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcchH
Confidence 9 55665669999999999999999 67764 46788889999999999999753
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-41 Score=354.05 Aligned_cols=437 Identities=18% Similarity=0.170 Sum_probs=318.4
Q ss_pred hhhhhhcCCCCCcEEECCCCCCCCC-CchhhhcCCCCCCcEEEccCCCCCCC----CCcCCcccEEEccCCcCCCCCCcc
Q 041121 3 KLLMRSLRLHSLRYLNLEENNLANC-SDWFQVIGKLHSLKTLTSHSCYLRPL----SNISSNFVSIDLSFNQLQGSIPDS 77 (574)
Q Consensus 3 ~l~~~l~~l~~L~~L~Ls~n~i~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~L~~L~Ls~n~i~~~~~~~ 77 (574)
.+|..+. ++|++|++++|.++.+ +. +|..+++|++|++++|+++.+ ..-.++|++|++++|+++. +|..
T Consensus 14 ~ip~~~~--~~L~~L~Ls~n~i~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~ 87 (520)
T 2z7x_B 14 HVPKDLS--QKTTILNISQNYISELWTS---DILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-ISCH 87 (520)
T ss_dssp SCCCSCC--TTCSEEECCSSCCCCCCHH---HHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE-EECC
T ss_pred ccccccc--ccccEEECCCCcccccChh---hccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee-cCcc
Confidence 3555444 7888888888888887 34 788888888888888888876 2223788888888888884 4544
Q ss_pred ccCCCCCCEEEccCCcCcc-Cchhhhhccc-----CCCCCccccccccccccccccC--cEEEccCCcc--cccCCC-CC
Q 041121 78 SQHMVYLEHLSLMFNELEG-GIPKFFGNML-----NLSDNKLAIIQNMSSGCLKNSL--ESLHLEVNHF--TGPIPD-LG 146 (574)
Q Consensus 78 ~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~-----~L~~n~l~~l~~~~~~~l~~~L--~~L~L~~n~l--~~~~~~-l~ 146 (574)
.+++|++|++++|.+++ ..|..|+.+. ++++|.+++ ..+..+++ | ++|++++|.+ .+..+. +.
T Consensus 88 --~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~-L~L~~L~l~~n~l~~~~~~~~~l~ 161 (520)
T 2z7x_B 88 --PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAH-LNISKVLLVLGETYGEKEDPEGLQ 161 (520)
T ss_dssp --CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTT-SCEEEEEEEECTTTTSSCCTTTTT
T ss_pred --ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhcccccc-ceeeEEEeeccccccccccccccc
Confidence 78888888888888886 3577777766 455666655 36677777 7 9999999988 555554 55
Q ss_pred CCC-CCCEEEccCcccccccc-hhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCC
Q 041121 147 GFS-SMKRLYLSDNLLNGTIN-KSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPP 224 (574)
Q Consensus 147 ~l~-~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~ 224 (574)
.+. +...+++++|.+.+..+ ..+..+++|+.|++++|.-.. ....+.+.+|. +..+++|+.|++++|.+.+..+.
T Consensus 162 ~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~--l~~l~~L~~L~l~~~~l~~~~~~ 238 (520)
T 2z7x_B 162 DFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDN-KCSYFLSILAK--LQTNPKLSNLTLNNIETTWNSFI 238 (520)
T ss_dssp TCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTT-TTHHHHHHHHG--GGGCTTCCEEEEEEEEEEHHHHH
T ss_pred ccccceEEEEeccCcchhhhhhhhhhcccceeecccccccccc-ccceeecchhh--hccccchhhccccccccCHHHHH
Confidence 544 23356677777765443 467778888888888875110 00122333442 46777888888888777642211
Q ss_pred C------CCCCcEEEcCCCcccccccccc-----cCCCCccEEECCCCCCCCCCCcchhcC---CCCcEEEccCcccccC
Q 041121 225 L------PSNSSFLNLSKNRFSRSISLCS-----ISGSKLTYIDLSSNLLSGKLPDCWWMF---DSLVILDLGNNSFSGR 290 (574)
Q Consensus 225 ~------~~~L~~L~L~~n~i~~~~~~~~-----~~~~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~N~l~~~ 290 (574)
. .++|++|++++|.+.+..+..+ ..+++|+.+++++|.+ ......+..+ .+|+.|++++|.+.+.
T Consensus 239 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~ 317 (520)
T 2z7x_B 239 RILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHM 317 (520)
T ss_dssp HHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCC
T ss_pred HHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccccc
Confidence 1 3478888888888886555555 6778888888888888 2332445444 6788888888887643
Q ss_pred CCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccc--
Q 041121 291 IPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISG-- 368 (574)
Q Consensus 291 ~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~-- 368 (574)
. .+..+++| +.+++++|.+.+..+..+..+++|++|++++|++++
T Consensus 318 ~--~~~~l~~L-------------------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 364 (520)
T 2z7x_B 318 L--CPSKISPF-------------------------------LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS 364 (520)
T ss_dssp C--CCSSCCCC-------------------------------CEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHH
T ss_pred c--chhhCCcc-------------------------------cEEEeECCccChhhhhhhccCCCCCEEEccCCccCccc
Confidence 2 12456666 778888888888778888888888888888888875
Q ss_pred cCCccccccccCccccCCCCcccc-ccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHh
Q 041121 369 KIPKCFNNFTAMTQERSSDPTIKV-YYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEE 447 (574)
Q Consensus 369 ~~~~~~~~l~~L~~l~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 447 (574)
..|..+..+++|+.+++++|.+.. . +...+..+++|++|++++|.+++..|..
T Consensus 365 ~~~~~~~~l~~L~~L~Ls~N~l~~~l--------------------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 418 (520)
T 2z7x_B 365 KIAEMTTQMKSLQQLDISQNSVSYDE--------------------------KKGDCSWTKSLLSLNMSSNILTDTIFRC 418 (520)
T ss_dssp HHHHHHTTCTTCCEEECCSSCCBCCG--------------------------GGCSCCCCTTCCEEECCSSCCCGGGGGS
T ss_pred cchHHHhhCCCCCEEECCCCcCCccc--------------------------ccchhccCccCCEEECcCCCCCcchhhh
Confidence 345667788888888888877652 1 1112456778999999999998766665
Q ss_pred hhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcccCC
Q 041121 448 IMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIP 517 (574)
Q Consensus 448 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p 517 (574)
+. ++|++|+|++|+++ .+|..+..+++|++|++++|+++.+.+..|..+++|+.|++++|++++..+
T Consensus 419 l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 419 LP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp CC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence 53 79999999999999 667777799999999999999996555569999999999999999996655
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-39 Score=334.62 Aligned_cols=370 Identities=22% Similarity=0.184 Sum_probs=283.6
Q ss_pred ccEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCccc
Q 041121 60 FVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFT 139 (574)
Q Consensus 60 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~ 139 (574)
-+.++.++++++ .+|. -.++|++|+|++|.+++..|. .|.++++ |++|++++|.+.
T Consensus 12 ~~~~~c~~~~l~-~lp~---l~~~l~~L~Ls~n~i~~~~~~-------------------~~~~l~~-L~~L~L~~n~~~ 67 (455)
T 3v47_A 12 GYNAICINRGLH-QVPE---LPAHVNYVDLSLNSIAELNET-------------------SFSRLQD-LQFLKVEQQTPG 67 (455)
T ss_dssp TTEEECCSSCCS-SCCC---CCTTCCEEECCSSCCCEECTT-------------------TTSSCTT-CCEEECCCCSTT
T ss_pred ccccCcCCCCcc-cCCC---CCCccCEEEecCCccCcCChh-------------------HhccCcc-ccEEECcCCccc
Confidence 356788888888 4554 237899999999999865555 5667788 999999999987
Q ss_pred ccC-CC-CCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCc
Q 041121 140 GPI-PD-LGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNH 217 (574)
Q Consensus 140 ~~~-~~-l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~ 217 (574)
+.+ +. |.++++|++|++++|++.+..|..|.++++|++|++++|.++... .+...+..+++|++|++++|.
T Consensus 68 ~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-------~~~~~~~~l~~L~~L~L~~n~ 140 (455)
T 3v47_A 68 LVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAV-------LSGNFFKPLTSLEMLVLRDNN 140 (455)
T ss_dssp CEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHH-------HHSSTTTTCTTCCEEECCSSB
T ss_pred ceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccc-------cCcccccCcccCCEEECCCCc
Confidence 543 44 999999999999999999888999999999999999999887411 011114667788888888888
Q ss_pred ccCCCCCC----CCCCcEEEcCCCcccccccccccCC--CCccEEECCCCCCCCCCCcch--------hcCCCCcEEEcc
Q 041121 218 FEGPIPPL----PSNSSFLNLSKNRFSRSISLCSISG--SKLTYIDLSSNLLSGKLPDCW--------WMFDSLVILDLG 283 (574)
Q Consensus 218 l~~~~~~~----~~~L~~L~L~~n~i~~~~~~~~~~~--~~L~~L~L~~n~l~~~~~~~~--------~~l~~L~~L~L~ 283 (574)
+++..|.. +++|++|++++|.+.+..+..+..+ .+++.|++++|.+.+..+..+ ..+++|++|+++
T Consensus 141 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls 220 (455)
T 3v47_A 141 IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLS 220 (455)
T ss_dssp CCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECT
T ss_pred cCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecC
Confidence 88776642 6778888888888877766665543 677888888888775544332 245678888888
Q ss_pred CcccccCCCcccccc---cCccccccccccccCccceeeeccccccccccccceEEecCceeccC----------CChhh
Q 041121 284 NNSFSGRIPDSMGFL---QNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGK----------TPFQL 350 (574)
Q Consensus 284 ~N~l~~~~~~~~~~l---~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~----------~~~~~ 350 (574)
+|.+++..+..+... .++ +.+++++|...+. .+..+
T Consensus 221 ~n~l~~~~~~~~~~~~~~~~L-------------------------------~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 221 GNGFKESMAKRFFDAIAGTKI-------------------------------QSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp TSCCCHHHHHHHHHHTTTCCE-------------------------------EEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred CCcccccchhhhhccccccce-------------------------------eeEeeccccccccccchhhhccCccccc
Confidence 888776666555443 334 5555555533321 11112
Q ss_pred c--CCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccC
Q 041121 351 C--QFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLG 428 (574)
Q Consensus 351 ~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 428 (574)
. ..++|++|++++|.+++..+..|. .++
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~--------------------------------------------------~l~ 299 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFALLKSVFS--------------------------------------------------HFT 299 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCEECTTTTT--------------------------------------------------TCT
T ss_pred ccccccCceEEEecCccccccchhhcc--------------------------------------------------cCC
Confidence 1 225677777777777655555544 345
Q ss_pred cccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEecc
Q 041121 429 LIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLS 508 (574)
Q Consensus 429 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls 508 (574)
+|++|++++|.+++..|..|.++++|++|+|++|++++..+..|.++++|++|++++|++++..|..|..+++|++|+++
T Consensus 300 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 379 (455)
T 3v47_A 300 DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALD 379 (455)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECC
Confidence 56999999999998888899999999999999999998889999999999999999999999999999999999999999
Q ss_pred CCcCcccCCCc-chhcccCcccccCCCCCCCCCC
Q 041121 509 YNNLSGKIPTG-TQLQSFNGSVYAGNPELCGLPL 541 (574)
Q Consensus 509 ~N~l~~~~p~~-~~~~~l~~~~l~~Np~~c~~~l 541 (574)
+|+|++..+.. ..++.++.+++++||+.|+|+.
T Consensus 380 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 380 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 99999544433 4678999999999999999983
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-38 Score=338.40 Aligned_cols=442 Identities=19% Similarity=0.199 Sum_probs=353.3
Q ss_pred hhh-hhhcCCCCCcEEECCCCCCCCC-CchhhhcCCCCCCcEEEccCCCCCCCC----CcCCcccEEEccCCcCCCCCCc
Q 041121 3 KLL-MRSLRLHSLRYLNLEENNLANC-SDWFQVIGKLHSLKTLTSHSCYLRPLS----NISSNFVSIDLSFNQLQGSIPD 76 (574)
Q Consensus 3 ~l~-~~l~~l~~L~~L~Ls~n~i~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~L~~L~Ls~n~i~~~~~~ 76 (574)
.++ .+|.++++|++|+|++|+|+.+ +. +|.++++|++|+|++|+++.+. .-.++|++|++++|++++..+.
T Consensus 66 ~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~---~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~ 142 (635)
T 4g8a_A 66 HLGSYSFFSFPELQVLDLSRCEIQTIEDG---AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF 142 (635)
T ss_dssp EECTTTTTTCTTCCEEECTTCCCCEECTT---TTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTC
T ss_pred CCCHHHHhCCCCCCEEECCCCcCCCcChh---HhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChh
Confidence 354 6799999999999999999999 55 8999999999999999998872 2348999999999999988888
Q ss_pred cccCCCCCCEEEccCCcCccC-chhhhhccc-----CCCCCccccccccccccccc---cCcEEEccCCcccccCCCCCC
Q 041121 77 SSQHMVYLEHLSLMFNELEGG-IPKFFGNML-----NLSDNKLAIIQNMSSGCLKN---SLESLHLEVNHFTGPIPDLGG 147 (574)
Q Consensus 77 ~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~-----~L~~n~l~~l~~~~~~~l~~---~L~~L~L~~n~l~~~~~~l~~ 147 (574)
.|+++++|++|++++|.+++. .|..+..+. ++++|.+++++...+..+.+ ....++++.|.+..+.+....
T Consensus 143 ~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~ 222 (635)
T 4g8a_A 143 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 222 (635)
T ss_dssp CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTT
T ss_pred hhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCccccc
Confidence 899999999999999999764 466666654 78899999977667777655 134788899988876666444
Q ss_pred CCCCCEEEccCccccc-ccchhhhccCCCCEEEc----------------------------------------------
Q 041121 148 FSSMKRLYLSDNLLNG-TINKSIGQIFKLEITCL---------------------------------------------- 180 (574)
Q Consensus 148 l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L---------------------------------------------- 180 (574)
...++.+++.+|.... ..+..+..+..++...+
T Consensus 223 ~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 302 (635)
T 4g8a_A 223 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLF 302 (635)
T ss_dssp TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTT
T ss_pred chhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhh
Confidence 4566777777765432 12233344444433332
Q ss_pred -----------cCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccC
Q 041121 181 -----------SQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSIS 249 (574)
Q Consensus 181 -----------s~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~ 249 (574)
.++.+.. ++. +.....++.|++.+|.+.+..+..+..++.+++..|.+..... ...
T Consensus 303 ~~~~~l~~l~~~~~~~~~---------~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~--~~~ 369 (635)
T 4g8a_A 303 NCLTNVSSFSLVSVTIER---------VKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS--EVD 369 (635)
T ss_dssp GGGTTCSEEEEESCEEEE---------CGG--GGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCC--CCB
T ss_pred hhhccccccccccccccc---------ccc--cccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcc--ccc
Confidence 2222211 111 3566789999999999998777778999999999998876543 346
Q ss_pred CCCccEEECCCCCCCC--CCCcchhcCCCCcEEEccCcccccCCCcccccccCccccccccccccCccceeeeccccccc
Q 041121 250 GSKLTYIDLSSNLLSG--KLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTF 327 (574)
Q Consensus 250 ~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~ 327 (574)
+++|+.|++++|.+.. ..+..+..+.+|+.++++.+.+.. .+..+..+++|
T Consensus 370 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L-------------------------- 422 (635)
T 4g8a_A 370 LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQL-------------------------- 422 (635)
T ss_dssp CTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTC--------------------------
T ss_pred ccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccc--------------------------
Confidence 8999999999999863 355667788999999999998874 45567778888
Q ss_pred cccccceEEecCceeccCCC-hhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccc
Q 041121 328 ESWEERFVRLKSNKFHGKTP-FQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHY 406 (574)
Q Consensus 328 ~~~~~~~l~L~~n~~~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~ 406 (574)
+.+++..++.....+ ..+..+++++.++++.|.+....+..+..++.++.+++++|....
T Consensus 423 -----~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~-------------- 483 (635)
T 4g8a_A 423 -----EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE-------------- 483 (635)
T ss_dssp -----CEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG--------------
T ss_pred -----cchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhccccc--------------
Confidence 888898888776544 467889999999999999998888889999999999988876421
Q ss_pred cccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCC
Q 041121 407 SFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRN 486 (574)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 486 (574)
+..+..+..+++|++|+|++|++++..|..|.++++|++|+|++|+|++..+..|.++++|++|++++|
T Consensus 484 -----------~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N 552 (635)
T 4g8a_A 484 -----------NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 552 (635)
T ss_dssp -----------GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTS
T ss_pred -----------ccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCC
Confidence 112334567888999999999999888999999999999999999999999999999999999999999
Q ss_pred cccccCCCCccCC-CCCCEEeccCCcCcccCC
Q 041121 487 QLVGGIPSSLSPL-SVLSVMDLSYNNLSGKIP 517 (574)
Q Consensus 487 ~i~~~~~~~l~~l-~~L~~L~Ls~N~l~~~~p 517 (574)
+|++..|+.|..+ ++|+.|+|++|++++...
T Consensus 553 ~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 553 HIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp CCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred cCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 9999999999998 689999999999996554
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-38 Score=327.61 Aligned_cols=391 Identities=22% Similarity=0.212 Sum_probs=174.3
Q ss_pred hhhhcCCCCCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCC-CC-cC--C-------------cccEEEccC
Q 041121 5 LMRSLRLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPL-SN-IS--S-------------NFVSIDLSF 67 (574)
Q Consensus 5 ~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~-~~--~-------------~L~~L~Ls~ 67 (574)
|+.+ +.++|++|++++|.+..+|. +|+++++|++|++++|++++. +. +. . ++++|++++
T Consensus 5 p~~~-~~~~L~~L~l~~n~l~~iP~---~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~ 80 (454)
T 1jl5_A 5 PRNV-SNTFLQEPLRHSSNLTEMPV---EAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNN 80 (454)
T ss_dssp ---------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTT
T ss_pred cccc-ccccchhhhcccCchhhCCh---hHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecC
Confidence 3444 35789999999999877777 788999999999998877643 11 11 2 358899999
Q ss_pred CcCCCCCCccccCCCCCCEEEccCCcCccCchhhhhccc--CCCCCccccccccccccccccCcEEEccCCcccccCCCC
Q 041121 68 NQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNML--NLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDL 145 (574)
Q Consensus 68 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~l 145 (574)
|++++ +|. ..++|++|++++|.+++ +|..+.++. ++++|.+++++.. .++ |++|++++|++++ ++.+
T Consensus 81 ~~l~~-lp~---~~~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l~~~----~~~-L~~L~L~~n~l~~-lp~~ 149 (454)
T 1jl5_A 81 LGLSS-LPE---LPPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSDL----PPL-LEYLGVSNNQLEK-LPEL 149 (454)
T ss_dssp SCCSC-CCS---CCTTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCCCSC----CTT-CCEEECCSSCCSS-CCCC
T ss_pred Ccccc-CCC---CcCCCCEEEccCCcCCc-cccccCCCcEEECCCCccCcccCC----CCC-CCEEECcCCCCCC-Cccc
Confidence 98885 333 23788999999888885 554333332 4444444444331 023 5555555555554 2245
Q ss_pred CCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCCC
Q 041121 146 GGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPL 225 (574)
Q Consensus 146 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~ 225 (574)
.++++|++|++++|++++ +|.. ..+|++|++++|.++.+ |. +..+++|+.|++++|.+++ +|..
T Consensus 150 ~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~l---------~~--~~~l~~L~~L~l~~N~l~~-l~~~ 213 (454)
T 1jl5_A 150 QNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEEL---------PE--LQNLPFLTAIYADNNSLKK-LPDL 213 (454)
T ss_dssp TTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSC---------CC--CTTCTTCCEEECCSSCCSS-CCCC
T ss_pred CCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCcC---------cc--ccCCCCCCEEECCCCcCCc-CCCC
Confidence 555555555555555553 2322 23555555555555432 11 2444555555555555554 2333
Q ss_pred CCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCccccc
Q 041121 226 PSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQF 305 (574)
Q Consensus 226 ~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~ 305 (574)
+.+|++|++++|.+..++ .+..+++|++|++++|.+++ .|.. +++|+.|++++|.+++ +|..+ ++|
T Consensus 214 ~~~L~~L~l~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~~---~~L---- 279 (454)
T 1jl5_A 214 PLSLESIVAGNNILEELP--ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPELP---QSL---- 279 (454)
T ss_dssp CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCCC---TTC----
T ss_pred cCcccEEECcCCcCCccc--ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCccc---CcC----
Confidence 345555555555555333 24445555555555555542 2221 2455555555555543 22211 233
Q ss_pred cccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccC
Q 041121 306 TQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERS 385 (574)
Q Consensus 306 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l 385 (574)
+.+++++|.+.+... ..++|++|++++|++++. + .
T Consensus 280 ---------------------------~~L~ls~N~l~~l~~----~~~~L~~L~l~~N~l~~i-~----~--------- 314 (454)
T 1jl5_A 280 ---------------------------TFLDVSENIFSGLSE----LPPNLYYLNASSNEIRSL-C----D--------- 314 (454)
T ss_dssp ---------------------------CEEECCSSCCSEESC----CCTTCCEEECCSSCCSEE-C----C---------
T ss_pred ---------------------------CEEECcCCccCcccC----cCCcCCEEECcCCcCCcc-c----C---------
Confidence 444555554443110 013445555555544421 1 0
Q ss_pred CCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCc
Q 041121 386 SDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLT 465 (574)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 465 (574)
.+++|++|++++|.+++ +|.. +++|++|++++|+++
T Consensus 315 ----------------------------------------~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~ 350 (454)
T 1jl5_A 315 ----------------------------------------LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA 350 (454)
T ss_dssp ----------------------------------------CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS
T ss_pred ----------------------------------------CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc
Confidence 01246777777777764 4433 467777777777777
Q ss_pred ccCCccccCCCCCCEEeCCCCcccc--cCCCCccCC-------------CCCCEEeccCCcCcc--cCCCcchhcccCcc
Q 041121 466 GQNSPKIGQLKSLDFLDLSRNQLVG--GIPSSLSPL-------------SVLSVMDLSYNNLSG--KIPTGTQLQSFNGS 528 (574)
Q Consensus 466 ~~~~~~~~~l~~L~~L~L~~N~i~~--~~~~~l~~l-------------~~L~~L~Ls~N~l~~--~~p~~~~~~~l~~~ 528 (574)
+ +|. .+++|++|++++|++++ .+|..+..+ ++|+.|++++|++++ .+|. ++..+
T Consensus 351 ~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~-----sl~~L 421 (454)
T 1jl5_A 351 E-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE-----SVEDL 421 (454)
T ss_dssp C-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC----------------------------------------
T ss_pred c-ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchh-----hHhhe
Confidence 4 343 35777777777777776 556666665 789999999999996 5664 45566
Q ss_pred cccCCCCCCC
Q 041121 529 VYAGNPELCG 538 (574)
Q Consensus 529 ~l~~Np~~c~ 538 (574)
.+.+|...|.
T Consensus 422 ~~~~~~~~~~ 431 (454)
T 1jl5_A 422 RMNSERVVDP 431 (454)
T ss_dssp ----------
T ss_pred eCcCcccCCc
Confidence 6777655443
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-39 Score=346.34 Aligned_cols=428 Identities=18% Similarity=0.141 Sum_probs=290.7
Q ss_pred CCCCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCCC----CcCCcccEEEccCCcCCCCCCccccCCCCCCE
Q 041121 11 LHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLS----NISSNFVSIDLSFNQLQGSIPDSSQHMVYLEH 86 (574)
Q Consensus 11 l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 86 (574)
+...+++++++|+++.+|. .+. ++|++|++++|.++.+. .-.++|++|++++|++++..|.+|..+++|++
T Consensus 30 ~~~~~~l~ls~~~L~~ip~---~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 104 (562)
T 3a79_B 30 NELESMVDYSNRNLTHVPK---DLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEY 104 (562)
T ss_dssp ---CCEEECTTSCCCSCCT---TSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred cCCCcEEEcCCCCCccCCC---CCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCE
Confidence 4455899999999998876 443 89999999999998873 22378999999999999888899999999999
Q ss_pred EEccCCcCccCchhh-hhccc--CCCCCccccccc-cccccccccCcEEEccCCcccccCCCCCCCCCC--CEEEccCcc
Q 041121 87 LSLMFNELEGGIPKF-FGNML--NLSDNKLAIIQN-MSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSM--KRLYLSDNL 160 (574)
Q Consensus 87 L~L~~n~l~~~~~~~-~~~l~--~L~~n~l~~l~~-~~~~~l~~~L~~L~L~~n~l~~~~~~l~~l~~L--~~L~L~~n~ 160 (574)
|++++|+++ .+|.. +.++. ++++|.+++++. ..|.++++ |++|++++|+++.. .+.++++| ++|++++|.
T Consensus 105 L~Ls~N~l~-~lp~~~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~-L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 105 LDVSHNRLQ-NISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTK-LTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVS 180 (562)
T ss_dssp EECTTSCCC-EECSCCCTTCSEEECCSSCCSBCCCCGGGGGCTT-CCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESS
T ss_pred EECCCCcCC-ccCccccccCCEEECCCCCccccCchHhhcccCc-ccEEecCCCccccC--chhhhhhceeeEEEeeccc
Confidence 999999998 45543 22333 889999998652 38999998 99999999999852 35666666 999999999
Q ss_pred c--ccccchhhhccC--CCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCc-------------------
Q 041121 161 L--NGTINKSIGQIF--KLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNH------------------- 217 (574)
Q Consensus 161 i--~~~~~~~~~~l~--~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~------------------- 217 (574)
+ .+..|..|..+. .+ .+++++|.+. +.++...+..+++|+.+++++|+
T Consensus 181 l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~--------~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L 251 (562)
T 3a79_B 181 YHIKGGETESLQIPNTTVL-HLVFHPNSLF--------SVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTL 251 (562)
T ss_dssp CCCCSSSCCEEEECCEEEE-EEEECSSSCC--------CCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSC
T ss_pred ccccccCcccccccCcceE-EEEecCccch--------hhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcc
Confidence 9 777777777654 22 3344554433 12333323344445555555442
Q ss_pred ---------ccCCC-----CC-CCCCCcEEEcCCCcccccccccc-----cCCCCccEEECCCCCCCCCCC-cchhc---
Q 041121 218 ---------FEGPI-----PP-LPSNSSFLNLSKNRFSRSISLCS-----ISGSKLTYIDLSSNLLSGKLP-DCWWM--- 273 (574)
Q Consensus 218 ---------l~~~~-----~~-~~~~L~~L~L~~n~i~~~~~~~~-----~~~~~L~~L~L~~n~l~~~~~-~~~~~--- 273 (574)
+.+.. +. ...+|++|++++|.+.+..+..+ ..++.|+.++++.+.+ ..| ..+..
T Consensus 252 ~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~ 329 (562)
T 3a79_B 252 LNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFA 329 (562)
T ss_dssp EEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHH
T ss_pred eEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhc
Confidence 22100 00 01245555555555543333222 2333333333333333 112 11111
Q ss_pred CCCCcEEEccCcccccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCC
Q 041121 274 FDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQF 353 (574)
Q Consensus 274 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~ 353 (574)
..+|+.|++++|.+.... ....+++| +.+++++|.+.+..+..+..+
T Consensus 330 ~~~L~~L~l~~n~~~~~~--~~~~l~~L-------------------------------~~L~l~~n~l~~~~~~~~~~l 376 (562)
T 3a79_B 330 EMNIKMLSISDTPFIHMV--CPPSPSSF-------------------------------TFLNFTQNVFTDSVFQGCSTL 376 (562)
T ss_dssp TCCCSEEEEESSCCCCCC--CCSSCCCC-------------------------------CEEECCSSCCCTTTTTTCCSC
T ss_pred cCcceEEEccCCCccccc--CccCCCCc-------------------------------eEEECCCCccccchhhhhccc
Confidence 134666666666554221 11344444 778888888888778888888
Q ss_pred CCCCEEEccCCcccccC--CccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCccc
Q 041121 354 AFLQVLDLSLNNISGKI--PKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIK 431 (574)
Q Consensus 354 ~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 431 (574)
++|++|++++|++++.. |..|.++++|+.+++++|.+... .+...+..+++|+
T Consensus 377 ~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~-------------------------~~~~~~~~l~~L~ 431 (562)
T 3a79_B 377 KRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSH-------------------------AYDRTCAWAESIL 431 (562)
T ss_dssp SSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSC-------------------------CSSCCCCCCTTCC
T ss_pred CCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCc-------------------------cChhhhcCcccCC
Confidence 88888888888887532 35677888888888888776420 1122345678899
Q ss_pred EEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCc
Q 041121 432 SLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNN 511 (574)
Q Consensus 432 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~ 511 (574)
+|++++|.+++..|..+. ++|++|+|++|+++ .+|..+.++++|++|++++|+++.+.+..|..+++|+.|++++|+
T Consensus 432 ~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 432 VLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp EEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred EEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCC
Confidence 999999999866555443 69999999999999 455556699999999999999996555559999999999999999
Q ss_pred CcccCCCc
Q 041121 512 LSGKIPTG 519 (574)
Q Consensus 512 l~~~~p~~ 519 (574)
+++..|..
T Consensus 509 ~~c~c~~~ 516 (562)
T 3a79_B 509 WDCTCPGI 516 (562)
T ss_dssp BCCCHHHH
T ss_pred cCCCcchH
Confidence 99776643
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-38 Score=327.10 Aligned_cols=319 Identities=18% Similarity=0.180 Sum_probs=210.8
Q ss_pred CcEEEccCCCCCCC-CCcCCcccEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccCchhhhhcccCCCCCccccccc
Q 041121 40 LKTLTSHSCYLRPL-SNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQN 118 (574)
Q Consensus 40 L~~L~l~~n~l~~~-~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~ 118 (574)
-+.++.++++++.+ ..+.+++++|++++|++++..+..|..+++|++|+|++|.+++..|.
T Consensus 13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~------------------ 74 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPG------------------ 74 (477)
T ss_dssp TTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT------------------
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChh------------------
Confidence 35677777777776 33557788888888888877788888899999999998888765554
Q ss_pred cccccccccCcEEEccCCcccccCCC-CCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCccccccC
Q 041121 119 MSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKL 197 (574)
Q Consensus 119 ~~~~~l~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~l 197 (574)
+|.++++ |++|+|++|+++...+. |.++++|++|++++|++.+..+..|..+++|++|++++|.++.+....|
T Consensus 75 -~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---- 148 (477)
T 2id5_A 75 -AFNNLFN-LRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAF---- 148 (477)
T ss_dssp -TTTTCTT-CCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSS----
T ss_pred -hhhCCcc-CCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhc----
Confidence 5666777 89999999888877766 7888899999999888888878888888888888888887765432221
Q ss_pred CchhhcCCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCC
Q 041121 198 PDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSL 277 (574)
Q Consensus 198 p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 277 (574)
.. +++|++|++++|.++++.+..+..+++|++|++++|.+.+..+..|..+++|
T Consensus 149 -----~~---------------------l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L 202 (477)
T 2id5_A 149 -----SG---------------------LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRL 202 (477)
T ss_dssp -----TT---------------------CTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTC
T ss_pred -----cC---------------------CCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCccc
Confidence 22 2344555555555555555555666777777777777776666667777777
Q ss_pred cEEEccCcccccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCC
Q 041121 278 VILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQ 357 (574)
Q Consensus 278 ~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~ 357 (574)
+.|++++|...+..+.......+| +.+++++|.+....+..+..+++|+
T Consensus 203 ~~L~l~~~~~~~~~~~~~~~~~~L-------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~ 251 (477)
T 2id5_A 203 KVLEISHWPYLDTMTPNCLYGLNL-------------------------------TSLSITHCNLTAVPYLAVRHLVYLR 251 (477)
T ss_dssp CEEEEECCTTCCEECTTTTTTCCC-------------------------------SEEEEESSCCCSCCHHHHTTCTTCC
T ss_pred ceeeCCCCccccccCcccccCccc-------------------------------cEEECcCCcccccCHHHhcCccccC
Confidence 777777776655444443333344 5556666655544444555555566
Q ss_pred EEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccC
Q 041121 358 VLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSS 437 (574)
Q Consensus 358 ~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~ 437 (574)
+|+|++|.+++..+..|.+ +++|+.|+|++
T Consensus 252 ~L~Ls~n~l~~~~~~~~~~--------------------------------------------------l~~L~~L~L~~ 281 (477)
T 2id5_A 252 FLNLSYNPISTIEGSMLHE--------------------------------------------------LLRLQEIQLVG 281 (477)
T ss_dssp EEECCSSCCCEECTTSCTT--------------------------------------------------CTTCCEEECCS
T ss_pred eeECCCCcCCccChhhccc--------------------------------------------------cccCCEEECCC
Confidence 6666655555433333322 22345566666
Q ss_pred CcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCccc
Q 041121 438 NKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLV 489 (574)
Q Consensus 438 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~ 489 (574)
|.+++..|..|.++++|++|+|++|++++..+..|..+++|++|++++|++.
T Consensus 282 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 282 GQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp SCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred CccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 6665555555666666666666666666555555555666666666666555
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-37 Score=316.16 Aligned_cols=356 Identities=17% Similarity=0.105 Sum_probs=220.8
Q ss_pred hhcCCCCCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCCC-CcCCcccEEEccCCcCCCCCCccccCCCCCC
Q 041121 7 RSLRLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLS-NISSNFVSIDLSFNQLQGSIPDSSQHMVYLE 85 (574)
Q Consensus 7 ~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 85 (574)
.++++++|++|++++|.++.++ .+..+++|++|++++|+++.+. .-.++|++|++++|.+++. + +..+++|+
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~----~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~ 109 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMT----GIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNL-D--VTPLTKLT 109 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCT----TGGGCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCC-C--CTTCTTCC
T ss_pred ChhHcCCCCEEEccCCCcccCh----hhcccCCCCEEEccCCcCCeEccccCCCCCEEECcCCCCcee-e--cCCCCcCC
Confidence 4566778888888888877764 3677788888888888777652 2235677777777776643 2 66667777
Q ss_pred EEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccccCCCCCCCCCCCEEEccCccccccc
Q 041121 86 HLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTI 165 (574)
Q Consensus 86 ~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~L~~n~i~~~~ 165 (574)
+|++++|++++. .+..+++ |++|++++|++++. .+..+++|++|++++|+..+.+
T Consensus 110 ~L~L~~N~l~~l----------------------~~~~l~~-L~~L~l~~N~l~~l--~l~~l~~L~~L~l~~n~~~~~~ 164 (457)
T 3bz5_A 110 YLNCDTNKLTKL----------------------DVSQNPL-LTYLNCARNTLTEI--DVSHNTQLTELDCHLNKKITKL 164 (457)
T ss_dssp EEECCSSCCSCC----------------------CCTTCTT-CCEEECTTSCCSCC--CCTTCTTCCEEECTTCSCCCCC
T ss_pred EEECCCCcCCee----------------------cCCCCCc-CCEEECCCCcccee--ccccCCcCCEEECCCCCccccc
Confidence 777776666532 1233455 66777777766653 2566666777777666433233
Q ss_pred chhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccc
Q 041121 166 NKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISL 245 (574)
Q Consensus 166 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~ 245 (574)
.+..+++|++|++++|.++.++ +..+++|+.|++++|.+++..-..+++|++|++++|++++++
T Consensus 165 --~~~~l~~L~~L~ls~n~l~~l~------------l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~ip-- 228 (457)
T 3bz5_A 165 --DVTPQTQLTTLDCSFNKITELD------------VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEID-- 228 (457)
T ss_dssp --CCTTCTTCCEEECCSSCCCCCC------------CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC--
T ss_pred --ccccCCcCCEEECCCCccceec------------cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccccC--
Confidence 3556666666666666665432 233445555555555555432222444444444444444432
Q ss_pred cccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCccccccccccccCccceeeeccccc
Q 041121 246 CSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQ 325 (574)
Q Consensus 246 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~ 325 (574)
+..+++|++|++++|.+++.. +..+++|+.|++++|.+
T Consensus 229 -~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~L-------------------------------------- 266 (457)
T 3bz5_A 229 -VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTDL-------------------------------------- 266 (457)
T ss_dssp -CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTCCC--------------------------------------
T ss_pred -ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCCCC--------------------------------------
Confidence 333444444444444444321 22334444444444332
Q ss_pred cccccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCcccc
Q 041121 326 TFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHH 405 (574)
Q Consensus 326 ~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~ 405 (574)
+.+++++|.+.+..| +..+++|+.|++++|...+.+|.. ...++.+++
T Consensus 267 -------~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~---~~~L~~L~l-------------------- 314 (457)
T 3bz5_A 267 -------LEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQ---AAGITELDL-------------------- 314 (457)
T ss_dssp -------SCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECT---TCCCSCCCC--------------------
T ss_pred -------CEEECCCCccCCccc--ccccccCCEEECCCCcccceeccC---CCcceEech--------------------
Confidence 445556665544443 345677777777777765555532 233333332
Q ss_pred ccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCC
Q 041121 406 YSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSR 485 (574)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 485 (574)
+..++|++|++++|++++. + +..+++|++|++++|++++ ++.|+.|++++
T Consensus 315 -------------------~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~ 364 (457)
T 3bz5_A 315 -------------------SQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALN 364 (457)
T ss_dssp -------------------TTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGG
T ss_pred -------------------hhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccC
Confidence 3456789999999999964 3 8899999999999999985 35677788999
Q ss_pred CcccccCCCCccCCCCCCEEeccCCcCcccCCCc
Q 041121 486 NQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTG 519 (574)
Q Consensus 486 N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~ 519 (574)
|.+.+. ..+..|..+++++|+++|.+|..
T Consensus 365 n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 365 NNFEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp TSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred CcEEec-----ceeeecCccccccCcEEEEcChh
Confidence 999875 35567888999999999999975
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-37 Score=320.14 Aligned_cols=299 Identities=18% Similarity=0.151 Sum_probs=158.4
Q ss_pred CcEEEccCCcccccCCC-CCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCC
Q 041121 128 LESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGT 206 (574)
Q Consensus 128 L~~L~L~~n~l~~~~~~-l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~ 206 (574)
++.|++++|++++..+. |.++++|++|+|++|.+++..|.+|.++++|++|++++|.++.++... +..++
T Consensus 34 l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---------~~~l~ 104 (477)
T 2id5_A 34 TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGV---------FTGLS 104 (477)
T ss_dssp CSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTS---------STTCT
T ss_pred CcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCccc---------ccCCC
Confidence 89999999999987776 899999999999999998888889999999999999999887554322 34455
Q ss_pred CCCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcc
Q 041121 207 SNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNS 286 (574)
Q Consensus 207 ~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 286 (574)
+|++|++++|++.+ ..+..+..+++|++|++++|.+++..+..|.++++|+.|++++|.
T Consensus 105 ~L~~L~Ls~n~i~~---------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 163 (477)
T 2id5_A 105 NLTKLDISENKIVI---------------------LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN 163 (477)
T ss_dssp TCCEEECTTSCCCE---------------------ECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC
T ss_pred CCCEEECCCCcccc---------------------CChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc
Confidence 55555555555544 433444444455555555555444444444455555555555555
Q ss_pred cccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCcc
Q 041121 287 FSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNI 366 (574)
Q Consensus 287 l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l 366 (574)
+++..+..+..+++| +.+++++|.+.+..+..|..+++|++|++++|..
T Consensus 164 l~~~~~~~l~~l~~L-------------------------------~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~ 212 (477)
T 2id5_A 164 LTSIPTEALSHLHGL-------------------------------IVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212 (477)
T ss_dssp CSSCCHHHHTTCTTC-------------------------------CEEEEESCCCCEECTTCSCSCTTCCEEEEECCTT
T ss_pred CcccChhHhcccCCC-------------------------------cEEeCCCCcCcEeChhhcccCcccceeeCCCCcc
Confidence 443333334444444 4444444444444444444555555555555443
Q ss_pred cccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcH
Q 041121 367 SGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPE 446 (574)
Q Consensus 367 ~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 446 (574)
.+.++.......+|+.+++++|.+... ....+..+++|+.|+|++|.+++..+.
T Consensus 213 ~~~~~~~~~~~~~L~~L~l~~n~l~~~--------------------------~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 266 (477)
T 2id5_A 213 LDTMTPNCLYGLNLTSLSITHCNLTAV--------------------------PYLAVRHLVYLRFLNLSYNPISTIEGS 266 (477)
T ss_dssp CCEECTTTTTTCCCSEEEEESSCCCSC--------------------------CHHHHTTCTTCCEEECCSSCCCEECTT
T ss_pred ccccCcccccCccccEEECcCCccccc--------------------------CHHHhcCccccCeeECCCCcCCccChh
Confidence 333322211111111111111100000 000011223334555555555444444
Q ss_pred hhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCc
Q 041121 447 EIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLS 513 (574)
Q Consensus 447 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~ 513 (574)
.|.++++|++|+|++|++++..+..|.++++|+.|++++|++++..+..|..+++|+.|++++|++.
T Consensus 267 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 267 MLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp SCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred hccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 4455555555555555555444445555555555555555555444444455555555555555554
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-36 Score=309.62 Aligned_cols=346 Identities=22% Similarity=0.299 Sum_probs=200.5
Q ss_pred CCCCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCCCCc--CCcccEEEccCCcCCCCCCccccCCCCCCEEE
Q 041121 11 LHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNI--SSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLS 88 (574)
Q Consensus 11 l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 88 (574)
+++|++|+++++.++.++. +..+++|++|++++|.++.+..+ .++|++|++++|.+++..+ +..+++|++|+
T Consensus 45 l~~l~~L~l~~~~i~~l~~----~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 118 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDG----VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 118 (466)
T ss_dssp HHTCCEEECCSSCCCCCTT----GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred hccccEEecCCCCCccCcc----hhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence 4556666666666665543 45566666666666666554221 2455555555555553332 55555555555
Q ss_pred ccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccccCCCCCCCCCCCEEEccCcccccccchh
Q 041121 89 LMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKS 168 (574)
Q Consensus 89 L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~ 168 (574)
+++|.+++. + .+..+++ |++|++++|.+.+. +.+.++++|++|+++ |.+.+.. .
T Consensus 119 L~~n~l~~~-~--------------------~~~~l~~-L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~-~~~~~~~--~ 172 (466)
T 1o6v_A 119 LFNNQITDI-D--------------------PLKNLTN-LNRLELSSNTISDI-SALSGLTSLQQLSFG-NQVTDLK--P 172 (466)
T ss_dssp CCSSCCCCC-G--------------------GGTTCTT-CSEEEEEEEEECCC-GGGTTCTTCSEEEEE-ESCCCCG--G
T ss_pred CCCCCCCCC-h--------------------HHcCCCC-CCEEECCCCccCCC-hhhccCCcccEeecC-CcccCch--h
Confidence 555554422 1 1233444 55555555555432 224555555555553 2332221 2
Q ss_pred hhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCCccccccccccc
Q 041121 169 IGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSI 248 (574)
Q Consensus 169 ~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~ 248 (574)
+..+++|++|++++|.++.++. +.. +++|++|++++|.+.+..+ +.
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~-----------l~~---------------------l~~L~~L~l~~n~l~~~~~--~~ 218 (466)
T 1o6v_A 173 LANLTTLERLDISSNKVSDISV-----------LAK---------------------LTNLESLIATNNQISDITP--LG 218 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG-----------GGG---------------------CTTCSEEECCSSCCCCCGG--GG
T ss_pred hccCCCCCEEECcCCcCCCChh-----------hcc---------------------CCCCCEEEecCCccccccc--cc
Confidence 4555555555555555443210 122 3445555555555544433 33
Q ss_pred CCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCccccccccccccCccceeeecccccccc
Q 041121 249 SGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFE 328 (574)
Q Consensus 249 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~ 328 (574)
.+++|++|++++|.+++. ..+..+++|+.|++++|.+++..+ +..+++|
T Consensus 219 ~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L--------------------------- 267 (466)
T 1o6v_A 219 ILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKL--------------------------- 267 (466)
T ss_dssp GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTC---------------------------
T ss_pred ccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCC---------------------------
Confidence 456666666666666532 345566666666666666654332 4455555
Q ss_pred ccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccc
Q 041121 329 SWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSF 408 (574)
Q Consensus 329 ~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 408 (574)
+.+++++|.+.+..+ +..+++|++|++++|++++..+ +
T Consensus 268 ----~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~---------------------------------- 305 (466)
T 1o6v_A 268 ----TELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--I---------------------------------- 305 (466)
T ss_dssp ----SEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--G----------------------------------
T ss_pred ----CEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--h----------------------------------
Confidence 556666666654333 5566677777777776654222 2
Q ss_pred cCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcc
Q 041121 409 QDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQL 488 (574)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i 488 (574)
..+++|+.|++++|.+++..| +..+++|++|++++|++++. ..+..+++|+.|++++|++
T Consensus 306 ----------------~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 306 ----------------SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQI 365 (466)
T ss_dssp ----------------GGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred ----------------cCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCcc
Confidence 235556888888888875544 67888888888888888765 4677888888888888888
Q ss_pred cccCCCCccCCCCCCEEeccCCcCcccCCC
Q 041121 489 VGGIPSSLSPLSVLSVMDLSYNNLSGKIPT 518 (574)
Q Consensus 489 ~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~ 518 (574)
++..| +..+++|+.|++++|++++ +|.
T Consensus 366 ~~~~~--~~~l~~L~~L~l~~n~~~~-~p~ 392 (466)
T 1o6v_A 366 SDLTP--LANLTRITQLGLNDQAWTN-APV 392 (466)
T ss_dssp CBCGG--GTTCTTCCEEECCCEEEEC-CCB
T ss_pred Cccch--hhcCCCCCEEeccCCcccC-Cch
Confidence 87766 7888888888888888884 444
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-35 Score=303.38 Aligned_cols=343 Identities=23% Similarity=0.287 Sum_probs=233.9
Q ss_pred CCCCcEEEccCCCCCCCCCc--CCcccEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccCchhhhhcccCCCCCccc
Q 041121 37 LHSLKTLTSHSCYLRPLSNI--SSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLA 114 (574)
Q Consensus 37 l~~L~~L~l~~n~l~~~~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~ 114 (574)
+++++.|+++++.++.+..+ .++|++|++++|.+++..+ +..+++|++|++++|.+.+..
T Consensus 45 l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~---------------- 106 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT---------------- 106 (466)
T ss_dssp HHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG----------------
T ss_pred hccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccCh----------------
Confidence 45666666666666655322 2566666666666654333 566666666666666555321
Q ss_pred cccccccccccccCcEEEccCCcccccCCCCCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCcccc
Q 041121 115 IIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIK 194 (574)
Q Consensus 115 ~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~ 194 (574)
.+..+++ |++|++++|.+++..+ +..+++|++|++++|.+.+. ..+..+++|++|++++ .+..+.
T Consensus 107 -----~~~~l~~-L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~-~~~~~~----- 171 (466)
T 1o6v_A 107 -----PLANLTN-LTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFGN-QVTDLK----- 171 (466)
T ss_dssp -----GGTTCTT-CCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEEE-SCCCCG-----
T ss_pred -----hhcCCCC-CCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecCC-cccCch-----
Confidence 1233444 6666666666654322 55666666666666666532 2355666666666542 222110
Q ss_pred ccCCchhhcCCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcC
Q 041121 195 GKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMF 274 (574)
Q Consensus 195 ~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 274 (574)
. +.. +++|++|++++|.+.+.. .+..+++|++|++++|.+++..+ +..+
T Consensus 172 ----~--~~~---------------------l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l 220 (466)
T 1o6v_A 172 ----P--LAN---------------------LTTLERLDISSNKVSDIS--VLAKLTNLESLIATNNQISDITP--LGIL 220 (466)
T ss_dssp ----G--GTT---------------------CTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG--GGGC
T ss_pred ----h--hcc---------------------CCCCCEEECcCCcCCCCh--hhccCCCCCEEEecCCccccccc--cccc
Confidence 0 122 345555556655555443 25567888888888888875544 6778
Q ss_pred CCCcEEEccCcccccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCC
Q 041121 275 DSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFA 354 (574)
Q Consensus 275 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~ 354 (574)
++|+.|++++|.+++. ..+..+++| +.+++++|.+.+..+ +..++
T Consensus 221 ~~L~~L~l~~n~l~~~--~~l~~l~~L-------------------------------~~L~l~~n~l~~~~~--~~~l~ 265 (466)
T 1o6v_A 221 TNLDELSLNGNQLKDI--GTLASLTNL-------------------------------TDLDLANNQISNLAP--LSGLT 265 (466)
T ss_dssp TTCCEEECCSSCCCCC--GGGGGCTTC-------------------------------SEEECCSSCCCCCGG--GTTCT
T ss_pred CCCCEEECCCCCcccc--hhhhcCCCC-------------------------------CEEECCCCccccchh--hhcCC
Confidence 8888888888888743 345666666 777888887776544 67777
Q ss_pred CCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEE
Q 041121 355 FLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLE 434 (574)
Q Consensus 355 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 434 (574)
+|++|++++|.+++..+ + ..+++|+.|+
T Consensus 266 ~L~~L~l~~n~l~~~~~--~--------------------------------------------------~~l~~L~~L~ 293 (466)
T 1o6v_A 266 KLTELKLGANQISNISP--L--------------------------------------------------AGLTALTNLE 293 (466)
T ss_dssp TCSEEECCSSCCCCCGG--G--------------------------------------------------TTCTTCSEEE
T ss_pred CCCEEECCCCccCcccc--c--------------------------------------------------cCCCccCeEE
Confidence 78888888877764322 2 2355679999
Q ss_pred ccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcc
Q 041121 435 LSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSG 514 (574)
Q Consensus 435 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~ 514 (574)
+++|.+++..+ +..+++|++|+|++|++++..+ +..+++|++|++++|++++. ..+..+++|+.|++++|++++
T Consensus 294 L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~ 367 (466)
T 1o6v_A 294 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISD 367 (466)
T ss_dssp CCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCB
T ss_pred cCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCc
Confidence 99999985544 8899999999999999997765 78999999999999999975 468999999999999999997
Q ss_pred cCCCcchhcccCcccccCCCCCC
Q 041121 515 KIPTGTQLQSFNGSVYAGNPELC 537 (574)
Q Consensus 515 ~~p~~~~~~~l~~~~l~~Np~~c 537 (574)
..| ...++.++.+++++|+|..
T Consensus 368 ~~~-~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 368 LTP-LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CGG-GTTCTTCCEEECCCEEEEC
T ss_pred cch-hhcCCCCCEEeccCCcccC
Confidence 776 6778899999999998876
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-35 Score=300.89 Aligned_cols=363 Identities=24% Similarity=0.230 Sum_probs=229.9
Q ss_pred ccEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccCchhhhhccc------------------CCCCCcccccccccc
Q 041121 60 FVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNML------------------NLSDNKLAIIQNMSS 121 (574)
Q Consensus 60 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------------------~L~~n~l~~l~~~~~ 121 (574)
|++|++++|.+ +.+|.+++++++|++|++++|.+.+..|..++.+. ++++|.++++|. .
T Consensus 13 L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~-~- 89 (454)
T 1jl5_A 13 LQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE-L- 89 (454)
T ss_dssp ----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS-C-
T ss_pred chhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCC-C-
Confidence 33334444444 24444444444444444444444444444443221 445555555554 1
Q ss_pred ccccccCcEEEccCCcccccCCCCCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchh
Q 041121 122 GCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLS 201 (574)
Q Consensus 122 ~~l~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~ 201 (574)
.++ |++|++++|.+++. +. .+++|++|++++|++++. +.. .++|++|++++|.++.+ |.
T Consensus 90 --~~~-L~~L~l~~n~l~~l-p~--~~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~l---------p~-- 148 (454)
T 1jl5_A 90 --PPH-LESLVASCNSLTEL-PE--LPQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEKL---------PE-- 148 (454)
T ss_dssp --CTT-CSEEECCSSCCSSC-CC--CCTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSSC---------CC--
T ss_pred --cCC-CCEEEccCCcCCcc-cc--ccCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCCC---------cc--
Confidence 234 88888888888863 33 237888888888888743 211 26788888888877643 31
Q ss_pred hcCCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEE
Q 041121 202 SRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILD 281 (574)
Q Consensus 202 ~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 281 (574)
+..+++|++|++++|++++ +|..+.+|++|++++|.+++++ .+..+++|++|++++|.+++ .|.. .++|++|+
T Consensus 149 ~~~l~~L~~L~l~~N~l~~-lp~~~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ 221 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNSLKK-LPDLPPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIV 221 (454)
T ss_dssp CTTCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEE
T ss_pred cCCCCCCCEEECCCCcCcc-cCCCcccccEEECcCCcCCcCc--cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEE
Confidence 4677888888888888886 5555678888888888888754 46788888888888888874 3432 25888888
Q ss_pred ccCcccccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEc
Q 041121 282 LGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDL 361 (574)
Q Consensus 282 L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L 361 (574)
+++|.++ .+| .+..+++| +.+++++|++.+. |. .+++|++|++
T Consensus 222 l~~n~l~-~lp-~~~~l~~L-------------------------------~~L~l~~N~l~~l-~~---~~~~L~~L~l 264 (454)
T 1jl5_A 222 AGNNILE-ELP-ELQNLPFL-------------------------------TTIYADNNLLKTL-PD---LPPSLEALNV 264 (454)
T ss_dssp CCSSCCS-SCC-CCTTCTTC-------------------------------CEEECCSSCCSSC-CS---CCTTCCEEEC
T ss_pred CcCCcCC-ccc-ccCCCCCC-------------------------------CEEECCCCcCCcc-cc---cccccCEEEC
Confidence 8888887 555 37777777 7888888888763 32 2478888888
Q ss_pred cCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCC
Q 041121 362 SLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLN 441 (574)
Q Consensus 362 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 441 (574)
++|++++ +|.. .++|+.+++++|.+..++ ..+++|+.|++++|.++
T Consensus 265 ~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~------------------------------~~~~~L~~L~l~~N~l~ 310 (454)
T 1jl5_A 265 RDNYLTD-LPEL---PQSLTFLDVSENIFSGLS------------------------------ELPPNLYYLNASSNEIR 310 (454)
T ss_dssp CSSCCSC-CCCC---CTTCCEEECCSSCCSEES------------------------------CCCTTCCEEECCSSCCS
T ss_pred CCCcccc-cCcc---cCcCCEEECcCCccCccc------------------------------CcCCcCCEEECcCCcCC
Confidence 8888875 4433 367778888777764321 01246899999999998
Q ss_pred CCCcHhhhhc-CCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcc--cCCC
Q 041121 442 GAVPEEIMDL-VGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSG--KIPT 518 (574)
Q Consensus 442 ~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~--~~p~ 518 (574)
+ ++ .+ ++|++|++++|++++ +|.. +++|++|++++|+++. +|. .+++|+.|++++|++++ .+|.
T Consensus 311 ~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~ 377 (454)
T 1jl5_A 311 S-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPE 377 (454)
T ss_dssp E-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCT
T ss_pred c-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChH
Confidence 4 22 23 589999999999996 4433 5899999999999995 555 47899999999999997 6776
Q ss_pred c-chh-------------cccCcccccCCCCCC
Q 041121 519 G-TQL-------------QSFNGSVYAGNPELC 537 (574)
Q Consensus 519 ~-~~~-------------~~l~~~~l~~Np~~c 537 (574)
. ..+ +.++.+++++|+...
T Consensus 378 ~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 378 SVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp TCCEEECCC------------------------
T ss_pred HHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence 5 223 678899999998775
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-35 Score=295.66 Aligned_cols=106 Identities=24% Similarity=0.254 Sum_probs=70.0
Q ss_pred ccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccC
Q 041121 430 IKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSY 509 (574)
Q Consensus 430 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~ 509 (574)
|++|++++|+++ .+|..+..+++|++|+|++|+++ .+|..+..+++|++|++++|+++... +..+++|+.|++++
T Consensus 274 L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~ 348 (390)
T 3o6n_A 274 LERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSH 348 (390)
T ss_dssp CCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCS
T ss_pred CCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC---chhhccCCEEEcCC
Confidence 466666666665 34445556677777777777776 34445666777777777777776442 56677888888888
Q ss_pred CcCcccCCCcchhcccCcccccCCCCCCCCCC
Q 041121 510 NNLSGKIPTGTQLQSFNGSVYAGNPELCGLPL 541 (574)
Q Consensus 510 N~l~~~~p~~~~~~~l~~~~l~~Np~~c~~~l 541 (574)
|++++. .....+..+....+.+++..|.++.
T Consensus 349 N~~~~~-~~~~~~~~~~~~~~~~~~~~c~~~~ 379 (390)
T 3o6n_A 349 NDWDCN-SLRALFRNVARPAVDDADQHCKIDY 379 (390)
T ss_dssp SCEEHH-HHHHHTTTCCTTTBCCCCSCCCTTC
T ss_pred CCccch-hHHHHHHHHHhhcccccCceecccc
Confidence 888742 2223455666667788888887654
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-33 Score=287.65 Aligned_cols=348 Identities=17% Similarity=0.127 Sum_probs=237.9
Q ss_pred hcCCCCCCcEEEccCCCCCCCCCc--CCcccEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccCchhhhhcccCCCC
Q 041121 33 VIGKLHSLKTLTSHSCYLRPLSNI--SSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSD 110 (574)
Q Consensus 33 ~~~~l~~L~~L~l~~n~l~~~~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 110 (574)
.+..+++|++|++++|.++++..+ .++|++|++++|++++. | +..+++|++|++++|.+++.
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~------------- 100 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL------------- 100 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-------------
T ss_pred ChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-------------
Confidence 567788888888888888876433 26788888888888754 3 77788888888888877743
Q ss_pred CccccccccccccccccCcEEEccCCcccccCCCCCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCC-CCccc
Q 041121 111 NKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNS-LTDLA 189 (574)
Q Consensus 111 n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~ 189 (574)
.+..+++ |++|++++|++++. + +..+++|++|++++|++++. .+..+++|++|++++|. +..+
T Consensus 101 ---------~~~~l~~-L~~L~L~~N~l~~l-~-~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~- 164 (457)
T 3bz5_A 101 ---------DVTPLTK-LTYLNCDTNKLTKL-D-VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL- 164 (457)
T ss_dssp ---------CCTTCTT-CCEEECCSSCCSCC-C-CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC-
T ss_pred ---------ecCCCCc-CCEEECCCCcCCee-c-CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc-
Confidence 2344566 88888888888764 2 77788888888888888764 26778888888888873 3222
Q ss_pred CccccccCCchhhcCCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCc
Q 041121 190 NIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPD 269 (574)
Q Consensus 190 ~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 269 (574)
.+..+++|+.|++++|++++.....+++|+.|++++|.+++. .+..+++|++|++++|++++ +|
T Consensus 165 -----------~~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip- 228 (457)
T 3bz5_A 165 -----------DVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID- 228 (457)
T ss_dssp -----------CCTTCTTCCEEECCSSCCCCCCCTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC-
T ss_pred -----------ccccCCcCCEEECCCCccceeccccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC-
Confidence 135567777777777777765433366777777777777765 25566777777777777775 34
Q ss_pred chhcCCCCcEEEccCcccccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChh
Q 041121 270 CWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQ 349 (574)
Q Consensus 270 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~ 349 (574)
+..+++|+.|++++|.+++..+ ..+++| +.+++++|
T Consensus 229 -~~~l~~L~~L~l~~N~l~~~~~---~~l~~L-------------------------------~~L~l~~n--------- 264 (457)
T 3bz5_A 229 -VTPLTQLTYFDCSVNPLTELDV---STLSKL-------------------------------TTLHCIQT--------- 264 (457)
T ss_dssp -CTTCTTCSEEECCSSCCSCCCC---TTCTTC-------------------------------CEEECTTC---------
T ss_pred -ccccCCCCEEEeeCCcCCCcCH---HHCCCC-------------------------------CEEeccCC---------
Confidence 6667777777777777775432 233444 44554443
Q ss_pred hcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCc
Q 041121 350 LCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGL 429 (574)
Q Consensus 350 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 429 (574)
+|+.|++++|.+.+.+| +..+++|+.+++++|..
T Consensus 265 -----~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~--------------------------------------- 298 (457)
T 3bz5_A 265 -----DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQ--------------------------------------- 298 (457)
T ss_dssp -----CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTT---------------------------------------
T ss_pred -----CCCEEECCCCccCCccc--ccccccCCEEECCCCcc---------------------------------------
Confidence 45666777777655554 45566676666665542
Q ss_pred ccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccC
Q 041121 430 IKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSY 509 (574)
Q Consensus 430 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~ 509 (574)
+..+..+.+.++ .+ .++++++|++|++++|++++. .+.++++|+.|++++|++++ ++.|..|++++
T Consensus 299 l~~l~~~~~~L~-~L--~l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~ 364 (457)
T 3bz5_A 299 LYLLDCQAAGIT-EL--DLSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALN 364 (457)
T ss_dssp CCEEECTTCCCS-CC--CCTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGG
T ss_pred cceeccCCCcce-Ee--chhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------ccccccccccC
Confidence 122222333333 11 145568999999999999975 38899999999999999985 24677788999
Q ss_pred CcCcccCCCcchhcccCcccccCCCCC
Q 041121 510 NNLSGKIPTGTQLQSFNGSVYAGNPEL 536 (574)
Q Consensus 510 N~l~~~~p~~~~~~~l~~~~l~~Np~~ 536 (574)
|.++|. ..+..+..+++++|...
T Consensus 365 n~l~g~----~~~~~l~~l~l~~N~l~ 387 (457)
T 3bz5_A 365 NNFEAE----GQTITMPKETLTNNSLT 387 (457)
T ss_dssp TSEEEE----EEEEECCCBCCBTTBEE
T ss_pred CcEEec----ceeeecCccccccCcEE
Confidence 999876 24556666777777543
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-34 Score=289.72 Aligned_cols=314 Identities=17% Similarity=0.152 Sum_probs=230.8
Q ss_pred CCCCCCEEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccccCCC-CCCCCCCCEEEccC
Q 041121 80 HMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSD 158 (574)
Q Consensus 80 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~L~~ 158 (574)
.++++++|++++|.++ .+|.. .|..+++ |++|++++|.+++..+. |.++++|++|++++
T Consensus 43 ~l~~l~~l~l~~~~l~-~l~~~------------------~~~~l~~-L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 102 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMR-KLPAA------------------LLDSFRQ-VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 102 (390)
T ss_dssp GGCCCSEEEEESCEES-EECTH------------------HHHHCCC-CSEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ccCCceEEEecCCchh-hCChh------------------Hhccccc-CcEEECCCCcccccChhhccCCCCcCEEECCC
Confidence 4678888888888877 33432 4566777 99999999988887775 88889999999999
Q ss_pred cccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCCc
Q 041121 159 NLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNR 238 (574)
Q Consensus 159 n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~ 238 (574)
|.+.+..+..|.++++|++|++++|.++.++... +..+ ++|++|++++|.
T Consensus 103 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~---------~~~l---------------------~~L~~L~L~~n~ 152 (390)
T 3o6n_A 103 NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI---------FHNT---------------------PKLTTLSMSNNN 152 (390)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT---------TTTC---------------------TTCCEEECCSSC
T ss_pred CCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHH---------hcCC---------------------CCCcEEECCCCc
Confidence 9988877888888899999999988877544321 2333 444555555555
Q ss_pred ccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCccccccccccccCcccee
Q 041121 239 FSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIV 318 (574)
Q Consensus 239 i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~ 318 (574)
+.++.+..+..+++|++|++++|.+++. .+..+++|+.|++++|.+++. ...++|
T Consensus 153 l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~-----~~~~~L----------------- 207 (390)
T 3o6n_A 153 LERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIAV----------------- 207 (390)
T ss_dssp CCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCSSC-----------------
T ss_pred cCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccccc-----CCCCcc-----------------
Confidence 5555555555666777777777766643 245566677777777666521 122233
Q ss_pred eeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCcccccccccc
Q 041121 319 WELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFV 398 (574)
Q Consensus 319 l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~ 398 (574)
+.+++++|.+..... ...++|++|++++|.+++. ..+
T Consensus 208 --------------~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l------------------------ 244 (390)
T 3o6n_A 208 --------------EELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWL------------------------ 244 (390)
T ss_dssp --------------SEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGG------------------------
T ss_pred --------------eEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHH------------------------
Confidence 556666666654322 1236788888888877642 122
Q ss_pred CCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCC
Q 041121 399 GPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSL 478 (574)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 478 (574)
..+++|++|++++|.+++..|..|..+++|++|+|++|++++. +..+..+++|
T Consensus 245 --------------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L 297 (390)
T 3o6n_A 245 --------------------------LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTL 297 (390)
T ss_dssp --------------------------GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-ECSSSCCTTC
T ss_pred --------------------------cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc-CcccCCCCCC
Confidence 3456679999999999988899999999999999999999854 5566789999
Q ss_pred CEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcccCCCcchhcccCcccccCCCCCCCCCC
Q 041121 479 DFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTGTQLQSFNGSVYAGNPELCGLPL 541 (574)
Q Consensus 479 ~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~l~~Np~~c~~~l 541 (574)
++|++++|+++ .+|..+..+++|+.|++++|+|+ .+| ...++.++.+++++|||.|+|..
T Consensus 298 ~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~-~~~-~~~~~~L~~L~l~~N~~~~~~~~ 357 (390)
T 3o6n_A 298 KVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK-LSTHHTLKNLTLSHNDWDCNSLR 357 (390)
T ss_dssp CEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC-CCC-CCTTCCCSEEECCSSCEEHHHHH
T ss_pred CEEECCCCcce-ecCccccccCcCCEEECCCCccc-eeC-chhhccCCEEEcCCCCccchhHH
Confidence 99999999999 45666888999999999999998 455 45678999999999999998653
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-34 Score=304.30 Aligned_cols=333 Identities=20% Similarity=0.149 Sum_probs=176.8
Q ss_pred CcccEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCc
Q 041121 58 SNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNH 137 (574)
Q Consensus 58 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~ 137 (574)
.+++.+++++|.+....+..+..+++|++|+|++|.+.+..|. .|..+++ |++|+|++|.
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~-------------------~~~~l~~-L~~L~L~~n~ 110 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTY-------------------AFAYAHT-IQKLYMGFNA 110 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTT-------------------TTTTCTT-CCEEECCSSC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChH-------------------HhcCCCC-CCEEECCCCc
Confidence 3455555555555544444455555555555555555533332 3334444 5555555555
Q ss_pred ccccCCC-CCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCC
Q 041121 138 FTGPIPD-LGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSN 216 (574)
Q Consensus 138 l~~~~~~-l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n 216 (574)
+++..+. |.++++|++|++++|.+++..+..|..+++|++|++++|.++.+... . +..+++|+.|++++|
T Consensus 111 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~--------~-~~~l~~L~~L~L~~N 181 (597)
T 3oja_B 111 IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD--------T-FQATTSLQNLQLSSN 181 (597)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT--------T-TTTCTTCCEEECTTS
T ss_pred CCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChh--------h-hhcCCcCcEEECcCC
Confidence 5554444 55555555555555555544444455555555555555554432211 1 233444444444444
Q ss_pred cccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccc
Q 041121 217 HFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMG 296 (574)
Q Consensus 217 ~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 296 (574)
.+++.....+++|+.|++++|.+.+. ...++|+.|++++|.++...+...
T Consensus 182 ~l~~~~~~~l~~L~~L~l~~n~l~~l-----------------------------~~~~~L~~L~ls~n~l~~~~~~~~- 231 (597)
T 3oja_B 182 RLTHVDLSLIPSLFHANVSYNLLSTL-----------------------------AIPIAVEELDASHNSINVVRGPVN- 231 (597)
T ss_dssp CCSBCCGGGCTTCSEEECCSSCCSEE-----------------------------ECCTTCSEEECCSSCCCEEECSCC-
T ss_pred CCCCcChhhhhhhhhhhcccCccccc-----------------------------cCCchhheeeccCCcccccccccC-
Confidence 44433222234444444444444332 222344444444444432211111
Q ss_pred cccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccc
Q 041121 297 FLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNN 376 (574)
Q Consensus 297 ~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 376 (574)
++| +.+++++|.+.+ +..+..+++|+.|+|++|.+++..|..|..
T Consensus 232 --~~L-------------------------------~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 276 (597)
T 3oja_B 232 --VEL-------------------------------TILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVK 276 (597)
T ss_dssp --SCC-------------------------------CEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred --CCC-------------------------------CEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcC
Confidence 122 444555555443 234556666777777777766555555544
Q ss_pred cccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCE
Q 041121 377 FTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVA 456 (574)
Q Consensus 377 l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 456 (574)
+++ |+.|+|++|.++ .+|..+..+++|++
T Consensus 277 l~~--------------------------------------------------L~~L~Ls~N~l~-~l~~~~~~l~~L~~ 305 (597)
T 3oja_B 277 MQR--------------------------------------------------LERLYISNNRLV-ALNLYGQPIPTLKV 305 (597)
T ss_dssp CSS--------------------------------------------------CCEEECTTSCCC-EEECSSSCCTTCCE
T ss_pred ccC--------------------------------------------------CCEEECCCCCCC-CCCcccccCCCCcE
Confidence 333 466666666665 34555555667777
Q ss_pred EeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcccCCCcchhcccCcccccCCCCC
Q 041121 457 LNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTGTQLQSFNGSVYAGNPEL 536 (574)
Q Consensus 457 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~l~~Np~~ 536 (574)
|+|++|.++ .+|..+..+++|+.|++++|++.+.. +..+++|+.|++++|++++.. ....+..+....+.+++..
T Consensus 306 L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~-~~~~~~~~~~~~~~~~~~~ 380 (597)
T 3oja_B 306 LDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNS-LRALFRNVARPAVDDADQH 380 (597)
T ss_dssp EECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHH-HHHHTTTCCTTTBCCCCCC
T ss_pred EECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChh-HHHHHHHHhhhcccccccc
Confidence 777777776 34555666677777777777776442 556677888888888887432 2234555556667788888
Q ss_pred CCCC
Q 041121 537 CGLP 540 (574)
Q Consensus 537 c~~~ 540 (574)
|+.+
T Consensus 381 C~~~ 384 (597)
T 3oja_B 381 CKID 384 (597)
T ss_dssp CCTT
T ss_pred CCcc
Confidence 8764
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-32 Score=275.60 Aligned_cols=83 Identities=29% Similarity=0.384 Sum_probs=52.9
Q ss_pred cCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEe
Q 041121 427 LGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMD 506 (574)
Q Consensus 427 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~ 506 (574)
+++|+.|++++|.+++. ..+..+++|++|++++|++++..+..|.++++|++|++++|++++..| +..+++|+.|+
T Consensus 264 l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 339 (347)
T 4fmz_A 264 LTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSAD 339 (347)
T ss_dssp CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEES
T ss_pred CCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceee
Confidence 33456666666666633 346666777777777777766666666677777777777777765544 66667777777
Q ss_pred ccCCcCc
Q 041121 507 LSYNNLS 513 (574)
Q Consensus 507 Ls~N~l~ 513 (574)
+++|+|+
T Consensus 340 l~~N~i~ 346 (347)
T 4fmz_A 340 FANQVIK 346 (347)
T ss_dssp SSCC---
T ss_pred hhhhccc
Confidence 7777664
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-33 Score=278.17 Aligned_cols=102 Identities=24% Similarity=0.323 Sum_probs=59.6
Q ss_pred CcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEec
Q 041121 428 GLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDL 507 (574)
Q Consensus 428 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~L 507 (574)
++|++|++++|.+++. ..+..+++|++|++++|++++. ..+..+++|++|++++|++++..+..+..+++|+.|++
T Consensus 243 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 318 (347)
T 4fmz_A 243 SQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFL 318 (347)
T ss_dssp TTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEEC
T ss_pred CCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEc
Confidence 3346666666666532 3455666666666666666543 34556666666666666666555556666666666666
Q ss_pred cCCcCcccCCCcchhcccCcccccCCC
Q 041121 508 SYNNLSGKIPTGTQLQSFNGSVYAGNP 534 (574)
Q Consensus 508 s~N~l~~~~p~~~~~~~l~~~~l~~Np 534 (574)
++|++++..| ...++.++.+++++|+
T Consensus 319 ~~n~l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 319 SQNHITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp CSSSCCCCGG-GGGCTTCSEESSSCC-
T ss_pred cCCccccccC-hhhhhccceeehhhhc
Confidence 6666663333 4455566666666665
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-34 Score=278.30 Aligned_cols=259 Identities=28% Similarity=0.428 Sum_probs=181.9
Q ss_pred CCcEEEcCCCcccc--cccccccCCCCccEEECCC-CCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCcccc
Q 041121 228 NSSFLNLSKNRFSR--SISLCSISGSKLTYIDLSS-NLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQ 304 (574)
Q Consensus 228 ~L~~L~L~~n~i~~--~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l 304 (574)
.++.|+|++|.+.+ ..+..+..+++|++|++++ |.+.+..|..|..+++|++|++++|.+++..|..+..+++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L--- 127 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL--- 127 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC---
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCC---
Confidence 44455555555544 3344444555555555553 55555555555555555555555555555555555555555
Q ss_pred ccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccc-cCccc
Q 041121 305 FTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFT-AMTQE 383 (574)
Q Consensus 305 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~l 383 (574)
+++++++|.+.+..|..+..+++|++|++++|++++.+|..+..+. .|+.+
T Consensus 128 ----------------------------~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L 179 (313)
T 1ogq_A 128 ----------------------------VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSM 179 (313)
T ss_dssp ----------------------------CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEE
T ss_pred ----------------------------CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEE
Confidence 5555555555555555555555555555555555555555555554 55555
Q ss_pred cCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCc
Q 041121 384 RSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNH 463 (574)
Q Consensus 384 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 463 (574)
++++|.+.. ..+..+..+. |++|++++|.+++..|..|..+++|++|+|++|+
T Consensus 180 ~L~~N~l~~--------------------------~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 232 (313)
T 1ogq_A 180 TISRNRLTG--------------------------KIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS 232 (313)
T ss_dssp ECCSSEEEE--------------------------ECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE
T ss_pred ECcCCeeec--------------------------cCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCc
Confidence 555554431 1111222333 7999999999998899999999999999999999
Q ss_pred CcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcccCCCcchhcccCcccccCCCCCCCCCCCC
Q 041121 464 LTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTGTQLQSFNGSVYAGNPELCGLPLPN 543 (574)
Q Consensus 464 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~l~~Np~~c~~~l~~ 543 (574)
+++..+. +..+++|++|++++|++++..|..|..+++|+.|++++|+++|.+|....++.++.+++.+||++|+.|++
T Consensus 233 l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~- 310 (313)
T 1ogq_A 233 LAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP- 310 (313)
T ss_dssp ECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-
T ss_pred eeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-
Confidence 9976665 78899999999999999999999999999999999999999999999888999999999999999998887
Q ss_pred CCC
Q 041121 544 KCR 546 (574)
Q Consensus 544 ~c~ 546 (574)
.|+
T Consensus 311 ~C~ 313 (313)
T 1ogq_A 311 ACT 313 (313)
T ss_dssp CCC
T ss_pred CCC
Confidence 573
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-33 Score=297.46 Aligned_cols=313 Identities=17% Similarity=0.154 Sum_probs=232.4
Q ss_pred CCCCCCEEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccccCCC-CCCCCCCCEEEccC
Q 041121 80 HMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSD 158 (574)
Q Consensus 80 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~L~~ 158 (574)
.+.+++.+++++|.+.. +|.. .|..+++ |++|++++|.+++..+. |..+++|++|+|++
T Consensus 49 ~l~~l~~l~l~~~~l~~-lp~~------------------~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 108 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRK-LPAA------------------LLDSFRQ-VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 108 (597)
T ss_dssp GGCCCSEEEESSCEESE-ECTH------------------HHHHCCC-CSEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred cCCCceEEEeeCCCCCC-cCHH------------------HHccCCC-CcEEECCCCCCCCCChHHhcCCCCCCEEECCC
Confidence 35667777777776663 3322 4556666 88888888888877765 78888888888888
Q ss_pred cccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCCc
Q 041121 159 NLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNR 238 (574)
Q Consensus 159 n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~ 238 (574)
|.+.+..+..|.++++|++|++++|.++.++... +.. +++|++|+|++|.
T Consensus 109 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~---------~~~---------------------l~~L~~L~Ls~N~ 158 (597)
T 3oja_B 109 NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI---------FHN---------------------TPKLTTLSMSNNN 158 (597)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT---------TTT---------------------CTTCCEEECCSSC
T ss_pred CcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHH---------hcc---------------------CCCCCEEEeeCCc
Confidence 8887777777788888888888887776443221 122 3556666666666
Q ss_pred ccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCccccccccccccCcccee
Q 041121 239 FSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIV 318 (574)
Q Consensus 239 i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~ 318 (574)
+.+..+..+..+++|++|++++|.+++. .+..+++|+.|++++|.+++. ....+|
T Consensus 159 l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~l-----~~~~~L----------------- 213 (597)
T 3oja_B 159 LERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIAV----------------- 213 (597)
T ss_dssp CCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCTTC-----------------
T ss_pred CCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCccccc-----cCCchh-----------------
Confidence 6666666677778888888888888754 255677888888888877632 223344
Q ss_pred eeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCcccccccccc
Q 041121 319 WELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFV 398 (574)
Q Consensus 319 l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~ 398 (574)
+.+++++|.+....+.. .++|+.|+|++|.+++. ..+
T Consensus 214 --------------~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~--~~l------------------------ 250 (597)
T 3oja_B 214 --------------EELDASHNSINVVRGPV---NVELTILKLQHNNLTDT--AWL------------------------ 250 (597)
T ss_dssp --------------SEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC--GGG------------------------
T ss_pred --------------heeeccCCccccccccc---CCCCCEEECCCCCCCCC--hhh------------------------
Confidence 67777777776443222 25677777777777641 222
Q ss_pred CCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCC
Q 041121 399 GPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSL 478 (574)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 478 (574)
..+++|+.|+|++|.+++..|..|..+++|++|+|++|++++. |..+..+++|
T Consensus 251 --------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L 303 (597)
T 3oja_B 251 --------------------------LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTL 303 (597)
T ss_dssp --------------------------GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE-ECSSSCCTTC
T ss_pred --------------------------ccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC-CcccccCCCC
Confidence 3456679999999999988899999999999999999999964 5567789999
Q ss_pred CEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcccCCCcchhcccCcccccCCCCCCCCC
Q 041121 479 DFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTGTQLQSFNGSVYAGNPELCGLP 540 (574)
Q Consensus 479 ~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~l~~Np~~c~~~ 540 (574)
+.|+|++|.+. .+|..+..+++|+.|+|++|+|++ +| ...++.+..+++++|||.|+|.
T Consensus 304 ~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~-~~-~~~~~~L~~L~l~~N~~~~~~~ 362 (597)
T 3oja_B 304 KVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK-LSTHHTLKNLTLSHNDWDCNSL 362 (597)
T ss_dssp CEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC-CCTTCCCSEEECCSSCEEHHHH
T ss_pred cEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCC-cC-hhhcCCCCEEEeeCCCCCChhH
Confidence 99999999999 567778899999999999999984 44 3467899999999999999864
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-31 Score=264.43 Aligned_cols=287 Identities=18% Similarity=0.194 Sum_probs=199.4
Q ss_pred CcEEEccCCcccccCCCCCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCC
Q 041121 128 LESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTS 207 (574)
Q Consensus 128 L~~L~L~~n~l~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~ 207 (574)
++.++++++.++.++..+ .++|++|++++|.+.+..+..|.++++|++|++++|.++.+.. .. +..+++
T Consensus 35 l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------~~-~~~l~~ 103 (332)
T 2ft3_A 35 LRVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHE--------KA-FSPLRK 103 (332)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECG--------GG-STTCTT
T ss_pred CCEEECCCCCccccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCH--------hH-hhCcCC
Confidence 888888888887554434 2678888888888887777788888888888888887774422 11 456677
Q ss_pred CCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCC--CCCcchhcCCCCcEEEccCc
Q 041121 208 NPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSG--KLPDCWWMFDSLVILDLGNN 285 (574)
Q Consensus 208 L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~N 285 (574)
|++|++++|.++...+...++|++|++++|.+.++.+..+..+++|++|++++|.++. ..+..+..+ +|+.|++++|
T Consensus 104 L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n 182 (332)
T 2ft3_A 104 LQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA 182 (332)
T ss_dssp CCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS
T ss_pred CCEEECCCCcCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC
Confidence 7777777777775444445677888888888877777667777888888888888753 556667666 7888888888
Q ss_pred ccccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCc
Q 041121 286 SFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNN 365 (574)
Q Consensus 286 ~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~ 365 (574)
.+++ +|..+. ++| +.+++++|.+.+..+..+..+++|++|++++|+
T Consensus 183 ~l~~-l~~~~~--~~L-------------------------------~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~ 228 (332)
T 2ft3_A 183 KLTG-IPKDLP--ETL-------------------------------NELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ 228 (332)
T ss_dssp BCSS-CCSSSC--SSC-------------------------------SCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC
T ss_pred CCCc-cCcccc--CCC-------------------------------CEEECCCCcCCccCHHHhcCCCCCCEEECCCCc
Confidence 7774 333322 344 556666666666666666666666666666666
Q ss_pred ccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCc
Q 041121 366 ISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVP 445 (574)
Q Consensus 366 l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 445 (574)
+++..+..|. .+++|++|++++|.++ .+|
T Consensus 229 l~~~~~~~~~--------------------------------------------------~l~~L~~L~L~~N~l~-~lp 257 (332)
T 2ft3_A 229 IRMIENGSLS--------------------------------------------------FLPTLRELHLDNNKLS-RVP 257 (332)
T ss_dssp CCCCCTTGGG--------------------------------------------------GCTTCCEEECCSSCCC-BCC
T ss_pred CCcCChhHhh--------------------------------------------------CCCCCCEEECCCCcCe-ecC
Confidence 6654444443 3444578888888887 677
Q ss_pred HhhhhcCCCCEEeCCCCcCcccCCccccCC------CCCCEEeCCCCccc--ccCCCCccCCCCCCEEeccCCc
Q 041121 446 EEIMDLVGLVALNLSRNHLTGQNSPKIGQL------KSLDFLDLSRNQLV--GGIPSSLSPLSVLSVMDLSYNN 511 (574)
Q Consensus 446 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l------~~L~~L~L~~N~i~--~~~~~~l~~l~~L~~L~Ls~N~ 511 (574)
..+..+++|++|++++|++++..+..|.+. +.|+.|++++|++. +..|..|..+++|+.+++++|+
T Consensus 258 ~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 258 AGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp TTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred hhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 777888888888888888887766666543 56778888888776 5666777778888888887774
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=9e-31 Score=259.40 Aligned_cols=288 Identities=18% Similarity=0.185 Sum_probs=202.3
Q ss_pred CcEEEccCCcccccCCCCCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCC
Q 041121 128 LESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTS 207 (574)
Q Consensus 128 L~~L~L~~n~l~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~ 207 (574)
++.++++++.++..+..+. ++|++|++++|.+++..+..|.++++|++|++++|.++.+. |.. +..+++
T Consensus 33 l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~--------~~~-~~~l~~ 101 (330)
T 1xku_A 33 LRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS--------PGA-FAPLVK 101 (330)
T ss_dssp TTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBC--------TTT-TTTCTT
T ss_pred CeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeC--------HHH-hcCCCC
Confidence 6677777766664433332 56677777777776665566777777777777777665432 111 455666
Q ss_pred CCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCC--CCCcchhcCCCCcEEEccCc
Q 041121 208 NPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSG--KLPDCWWMFDSLVILDLGNN 285 (574)
Q Consensus 208 L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~N 285 (574)
|++|++++|.++.......++|++|++++|.+.+..+..+..+++|++|++++|.+.. ..+..|..+++|++|++++|
T Consensus 102 L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n 181 (330)
T 1xku_A 102 LERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 181 (330)
T ss_dssp CCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS
T ss_pred CCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC
Confidence 6666776666665444445778888888888888777777788899999999988863 56777888889999999998
Q ss_pred ccccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCc
Q 041121 286 SFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNN 365 (574)
Q Consensus 286 ~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~ 365 (574)
.+++ +|..+. ++| +.+++++|.+.+..+..+..+++|++|++++|.
T Consensus 182 ~l~~-l~~~~~--~~L-------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 227 (330)
T 1xku_A 182 NITT-IPQGLP--PSL-------------------------------TELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 227 (330)
T ss_dssp CCCS-CCSSCC--TTC-------------------------------SEEECTTSCCCEECTGGGTTCTTCCEEECCSSC
T ss_pred cccc-CCcccc--ccC-------------------------------CEEECCCCcCCccCHHHhcCCCCCCEEECCCCc
Confidence 8874 343332 455 777888888777777777777888888888887
Q ss_pred ccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCc
Q 041121 366 ISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVP 445 (574)
Q Consensus 366 l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 445 (574)
+++..+..+.. +++|++|++++|.++ .+|
T Consensus 228 l~~~~~~~~~~--------------------------------------------------l~~L~~L~L~~N~l~-~lp 256 (330)
T 1xku_A 228 ISAVDNGSLAN--------------------------------------------------TPHLRELHLNNNKLV-KVP 256 (330)
T ss_dssp CCEECTTTGGG--------------------------------------------------STTCCEEECCSSCCS-SCC
T ss_pred CceeChhhccC--------------------------------------------------CCCCCEEECCCCcCc-cCC
Confidence 77555544433 344588888888887 677
Q ss_pred HhhhhcCCCCEEeCCCCcCcccCCccccC------CCCCCEEeCCCCcccc--cCCCCccCCCCCCEEeccCCc
Q 041121 446 EEIMDLVGLVALNLSRNHLTGQNSPKIGQ------LKSLDFLDLSRNQLVG--GIPSSLSPLSVLSVMDLSYNN 511 (574)
Q Consensus 446 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------l~~L~~L~L~~N~i~~--~~~~~l~~l~~L~~L~Ls~N~ 511 (574)
..+..+++|++|++++|++++..+..|.. .+.|+.|++++|.+.. +.|..|..+..++.+++++|+
T Consensus 257 ~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 257 GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp TTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred hhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 77888888888888888888777666643 3677888888887764 556777888888888888875
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2e-30 Score=256.99 Aligned_cols=291 Identities=17% Similarity=0.153 Sum_probs=243.0
Q ss_pred CCCcEEEccCCCCCCCC-CcCCcccEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccCchhhhhcccCCCCCccccc
Q 041121 38 HSLKTLTSHSCYLRPLS-NISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAII 116 (574)
Q Consensus 38 ~~L~~L~l~~n~l~~~~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l 116 (574)
.++++++++++.++.++ .+.+.+++|++++|++++..+..|..+++|++|++++|.+++..|.
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---------------- 94 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG---------------- 94 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTT----------------
T ss_pred CCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHH----------------
Confidence 37899999999888874 4568899999999999988788899999999999999999866565
Q ss_pred cccccccccccCcEEEccCCcccccCCCCCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCcccccc
Q 041121 117 QNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGK 196 (574)
Q Consensus 117 ~~~~~~~l~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~ 196 (574)
+|..+++ |++|++++|+++.....+. ++|++|++++|++.+..+..|.++++|++|++++|.++... .
T Consensus 95 ---~~~~l~~-L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~------~ 162 (330)
T 1xku_A 95 ---AFAPLVK-LERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG------I 162 (330)
T ss_dssp ---TTTTCTT-CCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGG------B
T ss_pred ---HhcCCCC-CCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccC------c
Confidence 5666777 9999999999986554443 79999999999999888888999999999999999886421 1
Q ss_pred CCchhhcCCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCC
Q 041121 197 LPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDS 276 (574)
Q Consensus 197 lp~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 276 (574)
.+.. +..+++|++|++++|.++.......++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++
T Consensus 163 ~~~~-~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 241 (330)
T 1xku_A 163 ENGA-FQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH 241 (330)
T ss_dssp CTTG-GGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTT
T ss_pred Chhh-ccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCC
Confidence 2222 677889999999999998766555789999999999999988888889999999999999999877888999999
Q ss_pred CcEEEccCcccccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCC---
Q 041121 277 LVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQF--- 353 (574)
Q Consensus 277 L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~--- 353 (574)
|++|++++|.++ .+|..+..+++| +.+++++|++++..+..|+..
T Consensus 242 L~~L~L~~N~l~-~lp~~l~~l~~L-------------------------------~~L~l~~N~i~~~~~~~f~~~~~~ 289 (330)
T 1xku_A 242 LRELHLNNNKLV-KVPGGLADHKYI-------------------------------QVVYLHNNNISAIGSNDFCPPGYN 289 (330)
T ss_dssp CCEEECCSSCCS-SCCTTTTTCSSC-------------------------------CEEECCSSCCCCCCTTSSSCSSCC
T ss_pred CCEEECCCCcCc-cCChhhccCCCc-------------------------------CEEECCCCcCCccChhhcCCcccc
Confidence 999999999998 777788888888 889999999998877777543
Q ss_pred ---CCCCEEEccCCcccc--cCCccccccccCccccCCCCc
Q 041121 354 ---AFLQVLDLSLNNISG--KIPKCFNNFTAMTQERSSDPT 389 (574)
Q Consensus 354 ---~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~l~l~~~~ 389 (574)
+.++.+++++|++.. ..|..|..+..++.+++++|+
T Consensus 290 ~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 290 TKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp TTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 788999999999864 556778888888888887763
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.98 E-value=9.5e-31 Score=259.40 Aligned_cols=289 Identities=21% Similarity=0.200 Sum_probs=243.8
Q ss_pred CCcEEEccCCCCCCC-CCcCCcccEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccCchhhhhcccCCCCCcccccc
Q 041121 39 SLKTLTSHSCYLRPL-SNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQ 117 (574)
Q Consensus 39 ~L~~L~l~~n~l~~~-~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~ 117 (574)
++++++++++.++.+ ..+.+++++|++++|.++...+..|..+++|++|++++|++++..|.
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----------------- 96 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEK----------------- 96 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGG-----------------
T ss_pred cCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHh-----------------
Confidence 789999999998887 34568999999999999988888999999999999999999866565
Q ss_pred ccccccccccCcEEEccCCcccccCCCCCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCccccccC
Q 041121 118 NMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKL 197 (574)
Q Consensus 118 ~~~~~~l~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~l 197 (574)
+|..+++ |++|++++|+++...+.+. ++|++|++++|++....+..|..+++|++|++++|.++... ..
T Consensus 97 --~~~~l~~-L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~------~~ 165 (332)
T 2ft3_A 97 --AFSPLRK-LQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSG------FE 165 (332)
T ss_dssp --GSTTCTT-CCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGG------SC
T ss_pred --HhhCcCC-CCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCC------CC
Confidence 5666787 9999999999996555443 89999999999999777788999999999999999987422 11
Q ss_pred CchhhcCCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCC
Q 041121 198 PDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSL 277 (574)
Q Consensus 198 p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 277 (574)
|.. +..+ +|+.|++++|++++......++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|
T Consensus 166 ~~~-~~~l-~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 243 (332)
T 2ft3_A 166 PGA-FDGL-KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTL 243 (332)
T ss_dssp TTS-SCSC-CCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTC
T ss_pred ccc-ccCC-ccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCC
Confidence 222 3445 89999999999998666667899999999999999988888899999999999999998888889999999
Q ss_pred cEEEccCcccccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcC-----
Q 041121 278 VILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQ----- 352 (574)
Q Consensus 278 ~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~----- 352 (574)
+.|++++|.++ .+|..+..+++| +.+++++|++++..+..|+.
T Consensus 244 ~~L~L~~N~l~-~lp~~l~~l~~L-------------------------------~~L~l~~N~l~~~~~~~~~~~~~~~ 291 (332)
T 2ft3_A 244 RELHLDNNKLS-RVPAGLPDLKLL-------------------------------QVVYLHTNNITKVGVNDFCPVGFGV 291 (332)
T ss_dssp CEEECCSSCCC-BCCTTGGGCTTC-------------------------------CEEECCSSCCCBCCTTSSSCSSCCS
T ss_pred CEEECCCCcCe-ecChhhhcCccC-------------------------------CEEECCCCCCCccChhHcccccccc
Confidence 99999999998 778788888888 88999999999887777765
Q ss_pred -CCCCCEEEccCCccc--ccCCccccccccCccccCCCCc
Q 041121 353 -FAFLQVLDLSLNNIS--GKIPKCFNNFTAMTQERSSDPT 389 (574)
Q Consensus 353 -~~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~l~l~~~~ 389 (574)
.+.|+.|++++|++. ...+..|..++.|+.+++++|.
T Consensus 292 ~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 292 KRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 367899999999987 5677889999999998887653
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-34 Score=298.11 Aligned_cols=211 Identities=19% Similarity=0.104 Sum_probs=120.3
Q ss_pred CCCcEEEcCCCccccccccccc-----CCCCccEEECCCCCCCCC----CCcchhcCCCCcEEEccCcccccCCC-----
Q 041121 227 SNSSFLNLSKNRFSRSISLCSI-----SGSKLTYIDLSSNLLSGK----LPDCWWMFDSLVILDLGNNSFSGRIP----- 292 (574)
Q Consensus 227 ~~L~~L~L~~n~i~~~~~~~~~-----~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~----- 292 (574)
++|++|++++|.+.......+. ..++|++|++++|.+++. .+..+..+++|++|++++|.+++...
T Consensus 170 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 249 (461)
T 1z7x_W 170 PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCP 249 (461)
T ss_dssp TTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred CCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHH
Confidence 5566666666666544332222 245777777777777643 35556667777777777777664321
Q ss_pred cccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccC----CChhhcCCCCCCEEEccCCcccc
Q 041121 293 DSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGK----TPFQLCQFAFLQVLDLSLNNISG 368 (574)
Q Consensus 293 ~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~----~~~~~~~~~~L~~L~L~~n~l~~ 368 (574)
..+..+++| +.+++++|.++.. ++..+..+++|++|++++|.+++
T Consensus 250 ~~~~~~~~L-------------------------------~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 298 (461)
T 1z7x_W 250 GLLHPSSRL-------------------------------RTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD 298 (461)
T ss_dssp HHTSTTCCC-------------------------------CEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHH
T ss_pred HHhcCCCCc-------------------------------eEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCch
Confidence 111234444 6666777666543 34455556777777777777654
Q ss_pred cCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCC----C
Q 041121 369 KIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGA----V 444 (574)
Q Consensus 369 ~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~ 444 (574)
..+..+...- ....++|++|++++|.+++. +
T Consensus 299 ~~~~~l~~~l---------------------------------------------~~~~~~L~~L~L~~n~l~~~~~~~l 333 (461)
T 1z7x_W 299 EGARLLCETL---------------------------------------------LEPGCQLESLWVKSCSFTAACCSHF 333 (461)
T ss_dssp HHHHHHHHHH---------------------------------------------TSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred HHHHHHHHHh---------------------------------------------ccCCccceeeEcCCCCCchHHHHHH
Confidence 3332222110 00123456666666666543 2
Q ss_pred cHhhhhcCCCCEEeCCCCcCcccCCccccC-----CCCCCEEeCCCCcccc----cCCCCccCCCCCCEEeccCCcCc
Q 041121 445 PEEIMDLVGLVALNLSRNHLTGQNSPKIGQ-----LKSLDFLDLSRNQLVG----GIPSSLSPLSVLSVMDLSYNNLS 513 (574)
Q Consensus 445 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----l~~L~~L~L~~N~i~~----~~~~~l~~l~~L~~L~Ls~N~l~ 513 (574)
+..+..+++|++|+|++|.+++..+..+.. .++|++|++++|++++ .++..+..+++|+.|++++|+++
T Consensus 334 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 334 SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp HHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred HHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 444555666677777766666443333322 4566677777766664 45555666666677777776665
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.97 E-value=6.3e-30 Score=264.53 Aligned_cols=252 Identities=21% Similarity=0.210 Sum_probs=188.2
Q ss_pred CCCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcc
Q 041121 207 SNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNS 286 (574)
Q Consensus 207 ~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 286 (574)
....++.++..++..+...+++++.|+|++|.|+++.+..|..+++|++|++++|.+++..+..|.++++|++|++++|.
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 34567777777776555557889999999999999888888899999999999999988888889999999999999999
Q ss_pred cccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCC-c
Q 041121 287 FSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLN-N 365 (574)
Q Consensus 287 l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n-~ 365 (574)
+++..+..|..+++| +.++|++|.+....+..|..+++|++|++++| .
T Consensus 135 l~~~~~~~~~~l~~L-------------------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~ 183 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKL-------------------------------RELWLRNNPIESIPSYAFNRVPSLMRLDLGELKK 183 (452)
T ss_dssp CSBCCTTTSSSCTTC-------------------------------CEEECCSCCCCEECTTTTTTCTTCCEEECCCCTT
T ss_pred CCccChhhhcccCCC-------------------------------CEEECCCCCcceeCHhHHhcCCcccEEeCCCCCC
Confidence 987777778888888 88889999888877778888899999999884 4
Q ss_pred ccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCc
Q 041121 366 ISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVP 445 (574)
Q Consensus 366 l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 445 (574)
+....+..|.+++ +|+.|++++|.+++ +|
T Consensus 184 l~~i~~~~~~~l~--------------------------------------------------~L~~L~L~~n~l~~-~~ 212 (452)
T 3zyi_A 184 LEYISEGAFEGLF--------------------------------------------------NLKYLNLGMCNIKD-MP 212 (452)
T ss_dssp CCEECTTTTTTCT--------------------------------------------------TCCEEECTTSCCSS-CC
T ss_pred ccccChhhccCCC--------------------------------------------------CCCEEECCCCcccc-cc
Confidence 4433333454444 45677777777763 33
Q ss_pred HhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcccCCCc-chhcc
Q 041121 446 EEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTG-TQLQS 524 (574)
Q Consensus 446 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~ 524 (574)
.+..+++|++|+|++|++++..+..|.++++|+.|++++|++++..+..|..+++|+.|+|++|+|++..+.. ..+..
T Consensus 213 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 291 (452)
T 3zyi_A 213 -NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRY 291 (452)
T ss_dssp -CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTT
T ss_pred -cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccC
Confidence 3566677777777777777666777777777777777777777766777777777777777777776333332 34566
Q ss_pred cCcccccCCCCCCCCCC
Q 041121 525 FNGSVYAGNPELCGLPL 541 (574)
Q Consensus 525 l~~~~l~~Np~~c~~~l 541 (574)
++.+++++|||.|+|.+
T Consensus 292 L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 292 LVELHLHHNPWNCDCDI 308 (452)
T ss_dssp CCEEECCSSCEECSTTT
T ss_pred CCEEEccCCCcCCCCCc
Confidence 66777777777777764
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.8e-30 Score=262.86 Aligned_cols=252 Identities=20% Similarity=0.208 Sum_probs=198.4
Q ss_pred CCCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcc
Q 041121 207 SNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNS 286 (574)
Q Consensus 207 ~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 286 (574)
....++.++..++..+...+.+++.|+|++|.|.++.+..|..+++|++|++++|.+++..+..|.++++|++|++++|.
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred CCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 34567777777776665567889999999999999888888899999999999999987777889999999999999999
Q ss_pred cccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCC-c
Q 041121 287 FSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLN-N 365 (574)
Q Consensus 287 l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n-~ 365 (574)
+++..+..|..+++| +.+++++|.+....+..|..+++|++|++++| .
T Consensus 124 l~~~~~~~~~~l~~L-------------------------------~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~ 172 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKL-------------------------------KELWLRNNPIESIPSYAFNRIPSLRRLDLGELKR 172 (440)
T ss_dssp CSSCCTTTSCSCSSC-------------------------------CEEECCSCCCCEECTTTTTTCTTCCEEECCCCTT
T ss_pred CCeeCHhHhhccccC-------------------------------ceeeCCCCcccccCHHHhhhCcccCEeCCCCCCC
Confidence 987777778888888 88899999888877778888899999999884 4
Q ss_pred ccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCc
Q 041121 366 ISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVP 445 (574)
Q Consensus 366 l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 445 (574)
+....+..|.+ +++|++|++++|.++ .+|
T Consensus 173 l~~i~~~~~~~--------------------------------------------------l~~L~~L~L~~n~l~-~~~ 201 (440)
T 3zyj_A 173 LSYISEGAFEG--------------------------------------------------LSNLRYLNLAMCNLR-EIP 201 (440)
T ss_dssp CCEECTTTTTT--------------------------------------------------CSSCCEEECTTSCCS-SCC
T ss_pred cceeCcchhhc--------------------------------------------------ccccCeecCCCCcCc-ccc
Confidence 44333334444 444677888888877 444
Q ss_pred HhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcccCCCc-chhcc
Q 041121 446 EEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTG-TQLQS 524 (574)
Q Consensus 446 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~ 524 (574)
.+..+++|++|+|++|++++..+..|.++++|+.|++++|++++..+..|..+++|+.|+|++|+|++..+.. ..+..
T Consensus 202 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 280 (440)
T 3zyj_A 202 -NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHH 280 (440)
T ss_dssp -CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTT
T ss_pred -ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccC
Confidence 3677788888888888888777788888888888888888888777788888888888888888887433333 34677
Q ss_pred cCcccccCCCCCCCCCC
Q 041121 525 FNGSVYAGNPELCGLPL 541 (574)
Q Consensus 525 l~~~~l~~Np~~c~~~l 541 (574)
++.+++++|||.|+|.+
T Consensus 281 L~~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 281 LERIHLHHNPWNCNCDI 297 (440)
T ss_dssp CCEEECCSSCEECSSTT
T ss_pred CCEEEcCCCCccCCCCc
Confidence 77888888888888865
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=9.2e-31 Score=256.75 Aligned_cols=247 Identities=27% Similarity=0.377 Sum_probs=168.1
Q ss_pred CcEEEccCCcccc--cCCC-CCCCCCCCEEEccC-cccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhc
Q 041121 128 LESLHLEVNHFTG--PIPD-LGGFSSMKRLYLSD-NLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSR 203 (574)
Q Consensus 128 L~~L~L~~n~l~~--~~~~-l~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~ 203 (574)
++.|++++|.+.+ ..+. +.++++|++|++++ |.+.+.+|..|..+++|++|++++|.++
T Consensus 52 l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~----------------- 114 (313)
T 1ogq_A 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS----------------- 114 (313)
T ss_dssp EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCE-----------------
T ss_pred EEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeC-----------------
Confidence 6666666666665 4444 66666666666663 6665555666666666666665555443
Q ss_pred CCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEcc
Q 041121 204 FGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLG 283 (574)
Q Consensus 204 ~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 283 (574)
+..+..+..+++|++|++++|.+++..|..+..+++|++|+++
T Consensus 115 -------------------------------------~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 157 (313)
T 1ogq_A 115 -------------------------------------GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157 (313)
T ss_dssp -------------------------------------EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC
T ss_pred -------------------------------------CcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECc
Confidence 2222334445666666666666665566666666666666666
Q ss_pred CcccccCCCccccccc-CccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEcc
Q 041121 284 NNSFSGRIPDSMGFLQ-NIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLS 362 (574)
Q Consensus 284 ~N~l~~~~~~~~~~l~-~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~ 362 (574)
+|.+++..|..+..++ +| +.+++++|.+.+..|..+..+. |++|+++
T Consensus 158 ~N~l~~~~p~~l~~l~~~L-------------------------------~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls 205 (313)
T 1ogq_A 158 GNRISGAIPDSYGSFSKLF-------------------------------TSMTISRNRLTGKIPPTFANLN-LAFVDLS 205 (313)
T ss_dssp SSCCEEECCGGGGCCCTTC-------------------------------CEEECCSSEEEEECCGGGGGCC-CSEEECC
T ss_pred CCcccCcCCHHHhhhhhcC-------------------------------cEEECcCCeeeccCChHHhCCc-ccEEECc
Confidence 6666666666666655 55 6666666666666666666665 7888888
Q ss_pred CCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCC
Q 041121 363 LNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNG 442 (574)
Q Consensus 363 ~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 442 (574)
+|.+++..+..|..+ ++|+.|++++|.+++
T Consensus 206 ~N~l~~~~~~~~~~l--------------------------------------------------~~L~~L~L~~N~l~~ 235 (313)
T 1ogq_A 206 RNMLEGDASVLFGSD--------------------------------------------------KNTQKIHLAKNSLAF 235 (313)
T ss_dssp SSEEEECCGGGCCTT--------------------------------------------------SCCSEEECCSSEECC
T ss_pred CCcccCcCCHHHhcC--------------------------------------------------CCCCEEECCCCceee
Confidence 887776665555443 335778888888875
Q ss_pred CCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcC
Q 041121 443 AVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNL 512 (574)
Q Consensus 443 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l 512 (574)
.+|. +..+++|++|+|++|++++..|..|..+++|++|++++|++++.+|.. ..+++|+.+++++|+.
T Consensus 236 ~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 236 DLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKC 303 (313)
T ss_dssp BGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSE
T ss_pred ecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCC
Confidence 5544 777888888888888888888888888888888888888888888776 7788888888988883
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-32 Score=286.58 Aligned_cols=257 Identities=16% Similarity=0.140 Sum_probs=165.4
Q ss_pred CCCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCC--------CCcCCcccEEEccCCcCCCCCCccc-cCCC
Q 041121 12 HSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPL--------SNISSNFVSIDLSFNQLQGSIPDSS-QHMV 82 (574)
Q Consensus 12 ~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--------~~~~~~L~~L~Ls~n~i~~~~~~~~-~~l~ 82 (574)
++|++|++++|++++.+ +...+..+++|++|++++|+++.. ....++|++|++++|.++...+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~-~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDAR-WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCCCCHHH-HHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ccceehhhhhcccCchh-HHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 56788899888887662 223477888899999999888743 1123788999999988875433333 2344
Q ss_pred ----CCCEEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccccCC-----C-CCCCCCCC
Q 041121 83 ----YLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIP-----D-LGGFSSMK 152 (574)
Q Consensus 83 ----~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~-----~-l~~l~~L~ 152 (574)
+|++|++++|.++......+.. .+..+++ |++|++++|.+++... . +...++|+
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~---------------~l~~~~~-L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~ 145 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSS---------------TLRTLPT-LQELHLSDNLLGDAGLQLLCEGLLDPQCRLE 145 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHH---------------HTTSCTT-CCEEECCSSBCHHHHHHHHHHHHTSTTCCCC
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHH---------------HHccCCc-eeEEECCCCcCchHHHHHHHHHHhcCCCcce
Confidence 6999999998887432222211 5666777 8999999988864322 1 33456899
Q ss_pred EEEccCccccccc----chhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCC----CCC
Q 041121 153 RLYLSDNLLNGTI----NKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGP----IPP 224 (574)
Q Consensus 153 ~L~L~~n~i~~~~----~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~----~~~ 224 (574)
+|++++|++++.. +..+..+++|++|++++|.+++.....+.. ......++|++|++++|.++.. ++.
T Consensus 146 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~----~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 221 (461)
T 1z7x_W 146 KLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQ----GLKDSPCQLEALKLESCGVTSDNCRDLCG 221 (461)
T ss_dssp EEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHH----HHHHSCCCCCEEECTTSCCBTTHHHHHHH
T ss_pred EEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHH----HHhcCCCCceEEEccCCCCcHHHHHHHHH
Confidence 9999999887643 566777889999999998876433222211 1012345777777777776653 122
Q ss_pred C---CCCCcEEEcCCCccccccc-----ccccCCCCccEEECCCCCCCCC----CCcchhcCCCCcEEEccCccccc
Q 041121 225 L---PSNSSFLNLSKNRFSRSIS-----LCSISGSKLTYIDLSSNLLSGK----LPDCWWMFDSLVILDLGNNSFSG 289 (574)
Q Consensus 225 ~---~~~L~~L~L~~n~i~~~~~-----~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~ 289 (574)
. .++|++|++++|.+..... ..+..+++|++|++++|.++.. .+..+..+++|++|++++|.+++
T Consensus 222 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 298 (461)
T 1z7x_W 222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD 298 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHH
T ss_pred HHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCch
Confidence 1 4667777777776655332 1222456777777777776632 34455566777777777776653
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-29 Score=245.72 Aligned_cols=273 Identities=19% Similarity=0.195 Sum_probs=190.3
Q ss_pred CeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCC--CCcchhcCCCCcEEEccCcc
Q 041121 209 PGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGK--LPDCWWMFDSLVILDLGNNS 286 (574)
Q Consensus 209 ~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~N~ 286 (574)
+.++++++.++..+...++++++|++++|.++.++...+..+++|++|++++|.++.. .+..+..+++|++|++++|.
T Consensus 10 ~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~ 89 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89 (306)
T ss_dssp TEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS
T ss_pred CEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc
Confidence 4566666666655544566777788888877777666677778888888888877632 24556677788888888887
Q ss_pred cccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCC-hhhcCCCCCCEEEccCCc
Q 041121 287 FSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTP-FQLCQFAFLQVLDLSLNN 365 (574)
Q Consensus 287 l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~-~~~~~~~~L~~L~L~~n~ 365 (574)
++ .++..+..+++| +.+++++|.+.+..+ ..+..+++|++|++++|.
T Consensus 90 i~-~l~~~~~~l~~L-------------------------------~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 137 (306)
T 2z66_A 90 VI-TMSSNFLGLEQL-------------------------------EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137 (306)
T ss_dssp EE-EEEEEEETCTTC-------------------------------CEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC
T ss_pred cc-cChhhcCCCCCC-------------------------------CEEECCCCcccccccchhhhhccCCCEEECCCCc
Confidence 77 345556667777 777888888776554 567777888888888888
Q ss_pred ccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCc
Q 041121 366 ISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVP 445 (574)
Q Consensus 366 l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 445 (574)
+++..+..+.++++|+.+++++|.+... ..+..+..+++|++|++++|.+++..|
T Consensus 138 l~~~~~~~~~~l~~L~~L~l~~n~l~~~-------------------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 192 (306)
T 2z66_A 138 TRVAFNGIFNGLSSLEVLKMAGNSFQEN-------------------------FLPDIFTELRNLTFLDLSQCQLEQLSP 192 (306)
T ss_dssp CEECSTTTTTTCTTCCEEECTTCEEGGG-------------------------EECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred CCccchhhcccCcCCCEEECCCCccccc-------------------------cchhHHhhCcCCCEEECCCCCcCCcCH
Confidence 7776777777777776666666654310 012233456677888888888887777
Q ss_pred HhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCC-CCCEEeccCCcCcccCCCc---ch
Q 041121 446 EEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLS-VLSVMDLSYNNLSGKIPTG---TQ 521 (574)
Q Consensus 446 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~-~L~~L~Ls~N~l~~~~p~~---~~ 521 (574)
..|..+++|++|+|++|++++..+..+..+++|++|++++|++.+..+..+..++ +|+.|++++|++++..+.. ..
T Consensus 193 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~ 272 (306)
T 2z66_A 193 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQW 272 (306)
T ss_dssp TTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHH
T ss_pred HHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHH
Confidence 7888888888888888888877777788888888888888888887888888774 7888888888887543322 12
Q ss_pred hcccCcccccCCCCCCC
Q 041121 522 LQSFNGSVYAGNPELCG 538 (574)
Q Consensus 522 ~~~l~~~~l~~Np~~c~ 538 (574)
+...+.+.+..+...|.
T Consensus 273 l~~~~~~~~~~~~~~C~ 289 (306)
T 2z66_A 273 IKDQRQLLVEVERMECA 289 (306)
T ss_dssp HHHTGGGBSCGGGCBEE
T ss_pred HHhhhhhhccccccccC
Confidence 23333444445555554
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=238.73 Aligned_cols=249 Identities=20% Similarity=0.169 Sum_probs=180.4
Q ss_pred CeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcc-c
Q 041121 209 PGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNS-F 287 (574)
Q Consensus 209 ~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l 287 (574)
+.++++++.++..+...++++++|++++|.++++.+..+..+++|++|++++|.+++..+..|..+++|++|++++|. +
T Consensus 14 ~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l 93 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93 (285)
T ss_dssp CEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred eEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCc
Confidence 456777777766554557788888888888888887778888888888888888887778888888888888888887 7
Q ss_pred ccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCccc
Q 041121 288 SGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNIS 367 (574)
Q Consensus 288 ~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~ 367 (574)
++..+..+..+++| +.+++++|.+.+..+..+..+++|++|++++|+++
T Consensus 94 ~~~~~~~~~~l~~L-------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 142 (285)
T 1ozn_A 94 RSVDPATFHGLGRL-------------------------------HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142 (285)
T ss_dssp CCCCTTTTTTCTTC-------------------------------CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred cccCHHHhcCCcCC-------------------------------CEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc
Confidence 76667777777777 77888888887777777777788888888888777
Q ss_pred ccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHh
Q 041121 368 GKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEE 447 (574)
Q Consensus 368 ~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 447 (574)
+..+..|..+ ++|++|++++|.+++..+..
T Consensus 143 ~~~~~~~~~l--------------------------------------------------~~L~~L~l~~n~l~~~~~~~ 172 (285)
T 1ozn_A 143 ALPDDTFRDL--------------------------------------------------GNLTHLFLHGNRISSVPERA 172 (285)
T ss_dssp CCCTTTTTTC--------------------------------------------------TTCCEEECCSSCCCEECTTT
T ss_pred ccCHhHhccC--------------------------------------------------CCccEEECCCCcccccCHHH
Confidence 5444444433 33577777777777555556
Q ss_pred hhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcccCCCcchhcccCc
Q 041121 448 IMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTGTQLQSFNG 527 (574)
Q Consensus 448 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~ 527 (574)
|.++++|++|++++|++++..+..|.++++|++|++++|++++..+..+..+++|+.|++++|++.+..+....+..++.
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~ 252 (285)
T 1ozn_A 173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQK 252 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHH
T ss_pred hcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHh
Confidence 77777777777777777777777777777777777777777766666677777777777777777754444333344444
Q ss_pred ccccCCCCCCC
Q 041121 528 SVYAGNPELCG 538 (574)
Q Consensus 528 ~~l~~Np~~c~ 538 (574)
.....+...|.
T Consensus 253 ~~~~~~~~~c~ 263 (285)
T 1ozn_A 253 FRGSSSEVPCS 263 (285)
T ss_dssp CCSEECCCBEE
T ss_pred cccccCccccC
Confidence 44555555443
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-28 Score=238.82 Aligned_cols=280 Identities=20% Similarity=0.213 Sum_probs=223.2
Q ss_pred CcEEEccCCcccccCCCCCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCC
Q 041121 128 LESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTS 207 (574)
Q Consensus 128 L~~L~L~~n~l~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~ 207 (574)
-+.++.+++.++.++..+. ++|++|++++|+++...+..|.++++|++|++++|.++.+.. .|.. +..
T Consensus 9 ~~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~~-~~~--- 76 (306)
T 2z66_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGC------CSQS-DFG--- 76 (306)
T ss_dssp TTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEE------EEHH-HHS---
T ss_pred CCEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccC------cccc-ccc---
Confidence 4688899988886655443 689999999999986666678999999999999998874421 1111 111
Q ss_pred CCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCC-cchhcCCCCcEEEccCcc
Q 041121 208 NPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLP-DCWWMFDSLVILDLGNNS 286 (574)
Q Consensus 208 L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~ 286 (574)
+++|++|++++|.+.+++. .+..+++|++|++++|.+++..+ ..+..+++|++|++++|.
T Consensus 77 ------------------~~~L~~L~Ls~n~i~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 137 (306)
T 2z66_A 77 ------------------TTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137 (306)
T ss_dssp ------------------CSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC
T ss_pred ------------------ccccCEEECCCCccccChh-hcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc
Confidence 4677888888888886554 46688999999999999986654 578899999999999999
Q ss_pred cccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceecc-CCChhhcCCCCCCEEEccCCc
Q 041121 287 FSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHG-KTPFQLCQFAFLQVLDLSLNN 365 (574)
Q Consensus 287 l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~-~~~~~~~~~~~L~~L~L~~n~ 365 (574)
+.+..+..+..+++| +.+++++|.+.+ ..+..+..+++|++|++++|.
T Consensus 138 l~~~~~~~~~~l~~L-------------------------------~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 138 TRVAFNGIFNGLSSL-------------------------------EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp CEECSTTTTTTCTTC-------------------------------CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred CCccchhhcccCcCC-------------------------------CEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence 988888888888888 889999999986 577788889999999999999
Q ss_pred ccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCc
Q 041121 366 ISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVP 445 (574)
Q Consensus 366 l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 445 (574)
+++..+..|.. +++|++|++++|.+++..+
T Consensus 187 l~~~~~~~~~~--------------------------------------------------l~~L~~L~L~~N~l~~~~~ 216 (306)
T 2z66_A 187 LEQLSPTAFNS--------------------------------------------------LSSLQVLNMSHNNFFSLDT 216 (306)
T ss_dssp CCEECTTTTTT--------------------------------------------------CTTCCEEECTTSCCSBCCS
T ss_pred cCCcCHHHhcC--------------------------------------------------CCCCCEEECCCCccCccCh
Confidence 88766666544 4446999999999997777
Q ss_pred HhhhhcCCCCEEeCCCCcCcccCCccccCCC-CCCEEeCCCCcccccCC--CCccCCCCCCEEeccCCcCcccCCCc
Q 041121 446 EEIMDLVGLVALNLSRNHLTGQNSPKIGQLK-SLDFLDLSRNQLVGGIP--SSLSPLSVLSVMDLSYNNLSGKIPTG 519 (574)
Q Consensus 446 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~i~~~~~--~~l~~l~~L~~L~Ls~N~l~~~~p~~ 519 (574)
..|..+++|++|+|++|++++..+..+..++ +|++|++++|++++.-+ .....+...+.+....+.+.+..|..
T Consensus 217 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~ 293 (306)
T 2z66_A 217 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSD 293 (306)
T ss_dssp GGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGG
T ss_pred hhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchh
Confidence 7899999999999999999999999999985 99999999999986422 12333445666677788888777764
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.8e-29 Score=248.77 Aligned_cols=276 Identities=18% Similarity=0.187 Sum_probs=146.0
Q ss_pred ccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCCC---CCCCcEEEcCCCcccccccccc
Q 041121 171 QIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPL---PSNSSFLNLSKNRFSRSISLCS 247 (574)
Q Consensus 171 ~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~L~~n~i~~~~~~~~ 247 (574)
.++.....+.+++.++.++.. ..+++++|++++|.+++..+.. +++|++|++++|.++++.+..+
T Consensus 29 ~C~~~~~c~~~~~~l~~iP~~------------~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 96 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIPSG------------LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSF 96 (353)
T ss_dssp EECTTSEEECCSTTCSSCCTT------------CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTT
T ss_pred CCCCCeEeeCCCCCccccccc------------ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhc
Confidence 455556667777666654421 1135666666666666544322 5566666666666666655556
Q ss_pred cCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCC-cccccccCccccccccccccCccceeeecccccc
Q 041121 248 ISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIP-DSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQT 326 (574)
Q Consensus 248 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~ 326 (574)
..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+ ..+..+++|
T Consensus 97 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L------------------------- 151 (353)
T 2z80_A 97 SSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKL------------------------- 151 (353)
T ss_dssp TTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTC-------------------------
T ss_pred CCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCC-------------------------
Confidence 666666666666666664444446666666666666666664333 345555555
Q ss_pred ccccccceEEecCc-eeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCcccc
Q 041121 327 FESWEERFVRLKSN-KFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHH 405 (574)
Q Consensus 327 ~~~~~~~~l~L~~n-~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~ 405 (574)
+.+++++| .+....+..+..+++|++|++++|.+++..+..+..+++|
T Consensus 152 ------~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L------------------------- 200 (353)
T 2z80_A 152 ------QILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNV------------------------- 200 (353)
T ss_dssp ------CEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEE-------------------------
T ss_pred ------cEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccC-------------------------
Confidence 55666665 3444445556666666666666666665555555555554
Q ss_pred ccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCcccc---CCCCCCEEe
Q 041121 406 YSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIG---QLKSLDFLD 482 (574)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---~l~~L~~L~ 482 (574)
++|++++|.++...+..+..+++|++|++++|++++..+..+. ..+.++.++
T Consensus 201 -------------------------~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~ 255 (353)
T 2z80_A 201 -------------------------SHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFT 255 (353)
T ss_dssp -------------------------EEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEE
T ss_pred -------------------------CeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccc
Confidence 5555555555422222233345555555555555543332221 233444455
Q ss_pred CCCCcccc----cCCCCccCCCCCCEEeccCCcCcccCCCc--chhcccCcccccCCCCCCCCC
Q 041121 483 LSRNQLVG----GIPSSLSPLSVLSVMDLSYNNLSGKIPTG--TQLQSFNGSVYAGNPELCGLP 540 (574)
Q Consensus 483 L~~N~i~~----~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~--~~~~~l~~~~l~~Np~~c~~~ 540 (574)
++++.+.+ .+|..+..+++|+.|++++|+++ .+|.. ..++.++.+++++||+.|+|+
T Consensus 256 L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 256 FRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp EESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 55444443 13334445555555555555555 34432 234455555555555555554
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-28 Score=245.55 Aligned_cols=258 Identities=19% Similarity=0.122 Sum_probs=141.7
Q ss_pred CcEEEccCCcccccCCC-CCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCC
Q 041121 128 LESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGT 206 (574)
Q Consensus 128 L~~L~L~~n~l~~~~~~-l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~ 206 (574)
|++|++++|++++..+. |.++++|++|++++|++++..+.+|.++++|++|++++|.++.++.. .+..++
T Consensus 54 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---------~~~~l~ 124 (353)
T 2z80_A 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSS---------WFKPLS 124 (353)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHH---------HHTTCT
T ss_pred CcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHh---------HhCCCc
Confidence 77788887777776664 77777788888877777766677777777777777777776643221 122222
Q ss_pred CCCeEeccCCcccCCCCCCCCCCcEEEcCCCccccccc-ccccCCCCccEEECCCC-CCCCCCCcchhcCCCCcEEEccC
Q 041121 207 SNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSIS-LCSISGSKLTYIDLSSN-LLSGKLPDCWWMFDSLVILDLGN 284 (574)
Q Consensus 207 ~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~-~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~ 284 (574)
+|++|++++|.+.+++. ..+..+++|++|++++| .+....+..|.++++|++|++++
T Consensus 125 ---------------------~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 183 (353)
T 2z80_A 125 ---------------------SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183 (353)
T ss_dssp ---------------------TCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred ---------------------cCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCC
Confidence 33333333333333332 23444555555555555 24433444555555555555555
Q ss_pred cccccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCC
Q 041121 285 NSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLN 364 (574)
Q Consensus 285 N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n 364 (574)
|.+++..|..+..+++| +.+++++|.+.......+..+++|++|++++|
T Consensus 184 n~l~~~~~~~l~~l~~L-------------------------------~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n 232 (353)
T 2z80_A 184 SDLQSYEPKSLKSIQNV-------------------------------SHLILHMKQHILLLEIFVDVTSSVECLELRDT 232 (353)
T ss_dssp TTCCEECTTTTTTCSEE-------------------------------EEEEEECSCSTTHHHHHHHHTTTEEEEEEESC
T ss_pred CCcCccCHHHHhccccC-------------------------------CeecCCCCccccchhhhhhhcccccEEECCCC
Confidence 55554444444444444 44444444443222222333444555555555
Q ss_pred cccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCC
Q 041121 365 NISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAV 444 (574)
Q Consensus 365 ~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 444 (574)
.+++..+..+..
T Consensus 233 ~l~~~~~~~l~~-------------------------------------------------------------------- 244 (353)
T 2z80_A 233 DLDTFHFSELST-------------------------------------------------------------------- 244 (353)
T ss_dssp BCTTCCCC------------------------------------------------------------------------
T ss_pred cccccccccccc--------------------------------------------------------------------
Confidence 444322211110
Q ss_pred cHhhhhcCCCCEEeCCCCcCcc----cCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcccCC
Q 041121 445 PEEIMDLVGLVALNLSRNHLTG----QNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIP 517 (574)
Q Consensus 445 ~~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p 517 (574)
......++.++|+++.+++ .+|..+.++++|++|++++|+++.+.+..|..+++|+.|++++|++++..|
T Consensus 245 ---~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 245 ---GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp -----CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ---ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 1123344445555544443 245566777777777777777775444456777888888888888876555
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-27 Score=230.66 Aligned_cols=228 Identities=21% Similarity=0.186 Sum_probs=198.1
Q ss_pred cEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCccccccccc
Q 041121 230 SFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQ 309 (574)
Q Consensus 230 ~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~ 309 (574)
+.++++++.++.++... .+++++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|
T Consensus 14 ~~~~c~~~~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L-------- 82 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL-------- 82 (285)
T ss_dssp CEEECCSSCCSSCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC--------
T ss_pred eEEEcCcCCcccCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCC--------
Confidence 67889999888775422 4789999999999997777889999999999999999998888888888888
Q ss_pred cccCccceeeeccccccccccccceEEecCce-eccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCC
Q 041121 310 FNRRTVFIVWELLTTQTFESWEERFVRLKSNK-FHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDP 388 (574)
Q Consensus 310 ~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~-~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~ 388 (574)
+.+++++|. +....+..+..+++|++|++++|.+++..+..|.+
T Consensus 83 -----------------------~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------ 127 (285)
T 1ozn_A 83 -----------------------EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG------------ 127 (285)
T ss_dssp -----------------------CEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT------------
T ss_pred -----------------------CEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhC------------
Confidence 889999997 77777888889999999999999988666655544
Q ss_pred ccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccC
Q 041121 389 TIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQN 468 (574)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 468 (574)
+++|++|++++|.+++..+..|..+++|++|+|++|++++..
T Consensus 128 --------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 128 --------------------------------------LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp --------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred --------------------------------------CcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 444699999999999777778999999999999999999888
Q ss_pred CccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcccCCCc-chhcccCcccccCCCCCCCCCC
Q 041121 469 SPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTG-TQLQSFNGSVYAGNPELCGLPL 541 (574)
Q Consensus 469 ~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~l~~~~l~~Np~~c~~~l 541 (574)
+..|.++++|++|++++|++++..|..|..+++|+.|++++|++++..+.. ..++.++.+++++||+.|+|++
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~ 243 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence 888999999999999999999999999999999999999999999544332 4678899999999999999986
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-26 Score=236.40 Aligned_cols=246 Identities=20% Similarity=0.125 Sum_probs=179.6
Q ss_pred CCcEEEccCCCCCCC-CCcCCcccEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccCchhhhhcccCCCCCcccccc
Q 041121 39 SLKTLTSHSCYLRPL-SNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQ 117 (574)
Q Consensus 39 ~L~~L~l~~n~l~~~-~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~ 117 (574)
..+.++.++..++.+ ..+.+++++|+|++|+++...+..|.++++|++|+|++|.+++..+.
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~----------------- 106 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIG----------------- 106 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGG-----------------
T ss_pred CCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChh-----------------
Confidence 467899999999888 45668899999999999988889999999999999999998855444
Q ss_pred ccccccccccCcEEEccCCcccccCCC-CCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCC-CCCcccCccccc
Q 041121 118 NMSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQN-SLTDLANIQIKG 195 (574)
Q Consensus 118 ~~~~~~l~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~ 195 (574)
+|.++++ |++|+|++|+++...+. |.++++|++|++++|+++...+..|..+++|++|++++| .+..++
T Consensus 107 --~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~------ 177 (440)
T 3zyj_A 107 --AFNGLAN-LNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS------ 177 (440)
T ss_dssp --GGTTCSS-CCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC------
T ss_pred --hccCCcc-CCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeC------
Confidence 5667787 99999999999987776 899999999999999999888888999999999999984 444332
Q ss_pred cCCchhhcCCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCC
Q 041121 196 KLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFD 275 (574)
Q Consensus 196 ~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 275 (574)
...+..+++|+.|++++|.++. ++ .+..+++|++|++++|.+++..+..|.+++
T Consensus 178 ---~~~~~~l~~L~~L~L~~n~l~~---------------------~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 231 (440)
T 3zyj_A 178 ---EGAFEGLSNLRYLNLAMCNLRE---------------------IP--NLTPLIKLDELDLSGNHLSAIRPGSFQGLM 231 (440)
T ss_dssp ---TTTTTTCSSCCEEECTTSCCSS---------------------CC--CCTTCSSCCEEECTTSCCCEECTTTTTTCT
T ss_pred ---cchhhcccccCeecCCCCcCcc---------------------cc--ccCCCcccCEEECCCCccCccChhhhccCc
Confidence 2224555666666666665553 22 133455666666666666655555666666
Q ss_pred CCcEEEccCcccccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCC
Q 041121 276 SLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAF 355 (574)
Q Consensus 276 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~ 355 (574)
+|+.|++++|.+++..+..|..+++| +.++|++|+++...+..|..+++
T Consensus 232 ~L~~L~L~~n~l~~~~~~~~~~l~~L-------------------------------~~L~L~~N~l~~~~~~~~~~l~~ 280 (440)
T 3zyj_A 232 HLQKLWMIQSQIQVIERNAFDNLQSL-------------------------------VEINLAHNNLTLLPHDLFTPLHH 280 (440)
T ss_dssp TCCEEECTTCCCCEECTTSSTTCTTC-------------------------------CEEECTTSCCCCCCTTTTSSCTT
T ss_pred cCCEEECCCCceeEEChhhhcCCCCC-------------------------------CEEECCCCCCCccChhHhccccC
Confidence 66666666666665555556656655 55666666666555556666677
Q ss_pred CCEEEccCCccc
Q 041121 356 LQVLDLSLNNIS 367 (574)
Q Consensus 356 L~~L~L~~n~l~ 367 (574)
|+.|+|++|++.
T Consensus 281 L~~L~L~~Np~~ 292 (440)
T 3zyj_A 281 LERIHLHHNPWN 292 (440)
T ss_dssp CCEEECCSSCEE
T ss_pred CCEEEcCCCCcc
Confidence 777777777765
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.3e-26 Score=235.72 Aligned_cols=246 Identities=19% Similarity=0.124 Sum_probs=212.6
Q ss_pred CCcEEEccCCCCCCC-CCcCCcccEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccCchhhhhcccCCCCCcccccc
Q 041121 39 SLKTLTSHSCYLRPL-SNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQ 117 (574)
Q Consensus 39 ~L~~L~l~~n~l~~~-~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~ 117 (574)
..+.++.++..++.+ ..+.+++++|+|++|++++..+..|..+++|++|+|++|.+++..+.
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~----------------- 117 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVG----------------- 117 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT-----------------
T ss_pred CCcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChh-----------------
Confidence 457899999999888 44668999999999999988899999999999999999999865554
Q ss_pred ccccccccccCcEEEccCCcccccCCC-CCCCCCCCEEEccCcccccccchhhhccCCCCEEEccC-CCCCcccCccccc
Q 041121 118 NMSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQ-NSLTDLANIQIKG 195 (574)
Q Consensus 118 ~~~~~~l~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~ 195 (574)
+|.++++ |++|+|++|+++...+. |.++++|++|++++|+++...+..|..+++|++|++++ |.+..+
T Consensus 118 --~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i------- 187 (452)
T 3zyi_A 118 --AFNGLAS-LNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYI------- 187 (452)
T ss_dssp --TTTTCTT-CCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEE-------
T ss_pred --hccCccc-CCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCcccc-------
Confidence 5667777 99999999999987777 88999999999999999977788899999999999998 455433
Q ss_pred cCCchhhcCCCCCCeEeccCCcccCCCCCC--CCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhc
Q 041121 196 KLPDLSSRFGTSNPGIDISSNHFEGPIPPL--PSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWM 273 (574)
Q Consensus 196 ~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 273 (574)
+...+..+++|+.|++++|.+++. |.. +++|++|+|++|.+.++.+..+..+++|++|++++|.+++..+..|.+
T Consensus 188 --~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 264 (452)
T 3zyi_A 188 --SEGAFEGLFNLKYLNLGMCNIKDM-PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDG 264 (452)
T ss_dssp --CTTTTTTCTTCCEEECTTSCCSSC-CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred --ChhhccCCCCCCEEECCCCccccc-ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcC
Confidence 333357788999999999999875 333 789999999999999999989999999999999999999888999999
Q ss_pred CCCCcEEEccCcccccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccC
Q 041121 274 FDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGK 345 (574)
Q Consensus 274 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~ 345 (574)
+++|+.|++++|.+++..+..+..+++| +.+++++|++...
T Consensus 265 l~~L~~L~L~~N~l~~~~~~~~~~l~~L-------------------------------~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 265 LASLVELNLAHNNLSSLPHDLFTPLRYL-------------------------------VELHLHHNPWNCD 305 (452)
T ss_dssp CTTCCEEECCSSCCSCCCTTSSTTCTTC-------------------------------CEEECCSSCEECS
T ss_pred CCCCCEEECCCCcCCccChHHhccccCC-------------------------------CEEEccCCCcCCC
Confidence 9999999999999998888888888888 8888888887643
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-25 Score=236.81 Aligned_cols=270 Identities=23% Similarity=0.246 Sum_probs=217.4
Q ss_pred CCCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCCCCcCCcccEEEccCCcCCCCCCccccCCCCCCEEEccC
Q 041121 12 HSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMF 91 (574)
Q Consensus 12 ~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 91 (574)
.++++|++++|.++.+|. .+. ++|++|++++|.++.+....++|++|++++|+++. +|. .+++|++|++++
T Consensus 40 ~~l~~L~ls~n~L~~lp~---~l~--~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPD---CLP--AHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFS 110 (622)
T ss_dssp HCCCEEECCSSCCSCCCS---CCC--TTCSEEEECSCCCSCCCCCCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECS
T ss_pred CCCcEEEecCCCcCccCh---hhC--CCCcEEEecCCCCCCCCCcCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcC
Confidence 369999999999998876 444 89999999999999987777999999999999984 454 789999999999
Q ss_pred CcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccccCCCCCCCCCCCEEEccCcccccccchhhhc
Q 041121 92 NELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQ 171 (574)
Q Consensus 92 n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~ 171 (574)
|.+++ +|. .+++ |+.|++++|+++.+.. .+++|++|++++|.+++. |. .
T Consensus 111 N~l~~-l~~----------------------~l~~-L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~l-~~---~ 159 (622)
T 3g06_A 111 NPLTH-LPA----------------------LPSG-LCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLASL-PA---L 159 (622)
T ss_dssp CCCCC-CCC----------------------CCTT-CCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCC-CC---C
T ss_pred CcCCC-CCC----------------------CCCC-cCEEECCCCCCCcCCC---CCCCCCEEECcCCcCCCc-CC---c
Confidence 99884 332 2344 8999999999886544 248899999999998853 33 3
Q ss_pred cCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCC
Q 041121 172 IFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGS 251 (574)
Q Consensus 172 l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~ 251 (574)
+++|+.|++++|.++.++ ..+++|+.|++++|.+++ +|..+++|+.|++++|.++.++. ..+
T Consensus 160 ~~~L~~L~L~~N~l~~l~-------------~~~~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~----~~~ 221 (622)
T 3g06_A 160 PSELCKLWAYNNQLTSLP-------------MLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPA----LPS 221 (622)
T ss_dssp CTTCCEEECCSSCCSCCC-------------CCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCC----CCT
T ss_pred cCCCCEEECCCCCCCCCc-------------ccCCCCcEEECCCCCCCC-CCCccchhhEEECcCCcccccCC----CCC
Confidence 578899999999888543 235678999999999886 44557899999999999987654 248
Q ss_pred CccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCccccccccccccCccceeeeccccccccccc
Q 041121 252 KLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWE 331 (574)
Q Consensus 252 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~ 331 (574)
+|++|++++|.+++ +| ..+++|+.|++++|.++. +|. .+++|
T Consensus 222 ~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L------------------------------ 263 (622)
T 3g06_A 222 GLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGL------------------------------ 263 (622)
T ss_dssp TCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTC------------------------------
T ss_pred CCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccC------------------------------
Confidence 89999999999985 44 456889999999999984 444 45666
Q ss_pred cceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCcccccccc
Q 041121 332 ERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTA 379 (574)
Q Consensus 332 ~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 379 (574)
+.+++++|+++ .+|..+..+++|+.|+|++|++++..+..+..++.
T Consensus 264 -~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~~ 309 (622)
T 3g06_A 264 -LSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITS 309 (622)
T ss_dssp -CEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHHH
T ss_pred -cEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhccc
Confidence 88999999999 56788999999999999999999887777666553
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.9e-28 Score=236.92 Aligned_cols=89 Identities=24% Similarity=0.293 Sum_probs=68.0
Q ss_pred cCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCccc-ccCCCCccCCCCCCEE
Q 041121 427 LGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLV-GGIPSSLSPLSVLSVM 505 (574)
Q Consensus 427 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~l~~l~~L~~L 505 (574)
+++|++|++++|.+++ +|..|..+++|++|+|++|+++. +|..+..+++|+.|++++|++. +..+..+..+++|+.+
T Consensus 190 l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l 267 (317)
T 3o53_A 190 FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267 (317)
T ss_dssp CTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHH
T ss_pred cccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEE
Confidence 4456888899998884 44558888899999999998884 5667888888999999999888 6667778888888888
Q ss_pred eccC-CcCcccCC
Q 041121 506 DLSY-NNLSGKIP 517 (574)
Q Consensus 506 ~Ls~-N~l~~~~p 517 (574)
++++ +.++|..|
T Consensus 268 ~l~~~~~l~~~~~ 280 (317)
T 3o53_A 268 AKQTVKKLTGQNE 280 (317)
T ss_dssp HHHHHHHHHSSSS
T ss_pred ECCCchhccCCch
Confidence 8874 34444333
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.7e-25 Score=232.12 Aligned_cols=262 Identities=24% Similarity=0.202 Sum_probs=192.4
Q ss_pred CcEEEccCCcccccCCCCCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCC
Q 041121 128 LESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTS 207 (574)
Q Consensus 128 L~~L~L~~n~l~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~ 207 (574)
++.|++++|.++.++..+. ++|++|++++|.|+. +|. .+++|++|++++|.|+.++. .+++
T Consensus 42 l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~-------------~l~~ 102 (622)
T 3g06_A 42 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSLPV-------------LPPG 102 (622)
T ss_dssp CCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSCCCC-------------CCTT
T ss_pred CcEEEecCCCcCccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCcCCC-------------CCCC
Confidence 8899999999985544454 789999999999884 444 57889999999998875432 3567
Q ss_pred CCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCccc
Q 041121 208 NPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSF 287 (574)
Q Consensus 208 L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 287 (574)
|++|++++|.+++..+ .+.+|+.|++++|.+++++. .+++|++|++++|.+++. |. .+++|+.|++++|.+
T Consensus 103 L~~L~Ls~N~l~~l~~-~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l 173 (622)
T 3g06_A 103 LLELSIFSNPLTHLPA-LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQL 173 (622)
T ss_dssp CCEEEECSCCCCCCCC-CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCC
T ss_pred CCEEECcCCcCCCCCC-CCCCcCEEECCCCCCCcCCC----CCCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCC
Confidence 8888888888876444 66778888888888776554 237788888888887743 33 345777888888877
Q ss_pred ccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCccc
Q 041121 288 SGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNIS 367 (574)
Q Consensus 288 ~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~ 367 (574)
++ +| ..+++| +.+++++|.+.+... .+++|+.|++++|.++
T Consensus 174 ~~-l~---~~~~~L-------------------------------~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~ 214 (622)
T 3g06_A 174 TS-LP---MLPSGL-------------------------------QELSVSDNQLASLPT----LPSELYKLWAYNNRLT 214 (622)
T ss_dssp SC-CC---CCCTTC-------------------------------CEEECCSSCCSCCCC----CCTTCCEEECCSSCCS
T ss_pred CC-Cc---ccCCCC-------------------------------cEEECCCCCCCCCCC----ccchhhEEECcCCccc
Confidence 74 33 234445 667777777665322 2356777777777766
Q ss_pred ccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHh
Q 041121 368 GKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEE 447 (574)
Q Consensus 368 ~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 447 (574)
.+|.. +++|+.|++++|.+++ +|
T Consensus 215 -~l~~~-----------------------------------------------------~~~L~~L~Ls~N~L~~-lp-- 237 (622)
T 3g06_A 215 -SLPAL-----------------------------------------------------PSGLKELIVSGNRLTS-LP-- 237 (622)
T ss_dssp -SCCCC-----------------------------------------------------CTTCCEEECCSSCCSC-CC--
T ss_pred -ccCCC-----------------------------------------------------CCCCCEEEccCCccCc-CC--
Confidence 23211 2447899999999984 55
Q ss_pred hhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcccCCCc
Q 041121 448 IMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTG 519 (574)
Q Consensus 448 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~ 519 (574)
..+++|++|+|++|+|+. +|. .+++|+.|++++|+|+ .+|..+..+++|+.|+|++|++++.+|..
T Consensus 238 -~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~ 303 (622)
T 3g06_A 238 -VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA 303 (622)
T ss_dssp -CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHH
T ss_pred -CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHH
Confidence 456889999999999985 443 5688999999999999 66788999999999999999999777654
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.3e-29 Score=266.68 Aligned_cols=409 Identities=13% Similarity=0.045 Sum_probs=218.7
Q ss_pred hhhhcCCCCCcEEECCCCCCCC----CC--------chhhh-cCCCCCCcEEEccCCCCCCC-----CCcC-CcccEEEc
Q 041121 5 LMRSLRLHSLRYLNLEENNLAN----CS--------DWFQV-IGKLHSLKTLTSHSCYLRPL-----SNIS-SNFVSIDL 65 (574)
Q Consensus 5 ~~~l~~l~~L~~L~Ls~n~i~~----~~--------~~~~~-~~~l~~L~~L~l~~n~l~~~-----~~~~-~~L~~L~L 65 (574)
+..+..+++|++|+++++.... +| .|... +..+++|++|+|++|.+++. .... .+|++|++
T Consensus 66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L 145 (592)
T 3ogk_B 66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKL 145 (592)
T ss_dssp HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEE
T ss_pred HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEEC
Confidence 3456778889999998754211 01 11112 23788899999998877654 1112 34888888
Q ss_pred cCCc-CCC-CCCccccCCCCCCEEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCccccc--
Q 041121 66 SFNQ-LQG-SIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGP-- 141 (574)
Q Consensus 66 s~n~-i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~-- 141 (574)
++|. ++. .++.....+++|++|+|++|.+.+.....+.. .+..+++ |++|++++|.+++.
T Consensus 146 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~---------------~~~~~~~-L~~L~L~~n~~~~~~~ 209 (592)
T 3ogk_B 146 DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHE---------------LAQHNTS-LEVLNFYMTEFAKISP 209 (592)
T ss_dssp ESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHH---------------HHHHCCC-CCEEECTTCCCSSCCH
T ss_pred cCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHH---------------HHhcCCC-ccEEEeeccCCCccCH
Confidence 8886 221 12223347888888888888876543322221 3345666 88888888887632
Q ss_pred --CCC-CCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcc
Q 041121 142 --IPD-LGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHF 218 (574)
Q Consensus 142 --~~~-l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l 218 (574)
.+. +.++++|++|++++|.+.+ ++..+..+++|++|+++...... .. +..+.. +..+++|+.++++++..
T Consensus 210 ~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~-~~----~~~~~~-l~~~~~L~~L~l~~~~~ 282 (592)
T 3ogk_B 210 KDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDI-GM----PEKYMN-LVFPRKLCRLGLSYMGP 282 (592)
T ss_dssp HHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCT-TC----TTSSSC-CCCCTTCCEEEETTCCT
T ss_pred HHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhccccccccc-ch----HHHHHH-hhccccccccCccccch
Confidence 222 5567888888888888874 56778888888888887532110 00 011111 34455666666555322
Q ss_pred cCCCCCC---CCCCcEEEcCCCccccccc-ccccCCCCccEEECCCCCCCC-CCCcchhcCCCCcEEEccC---------
Q 041121 219 EGPIPPL---PSNSSFLNLSKNRFSRSIS-LCSISGSKLTYIDLSSNLLSG-KLPDCWWMFDSLVILDLGN--------- 284 (574)
Q Consensus 219 ~~~~~~~---~~~L~~L~L~~n~i~~~~~-~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~--------- 284 (574)
.. +|.. +++|++|++++|.+++... ..+..+++|++|+++ +.+.. ..+..+..+++|++|++++
T Consensus 283 ~~-l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~ 360 (592)
T 3ogk_B 283 NE-MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMED 360 (592)
T ss_dssp TT-GGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSS
T ss_pred hH-HHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCcccccccc
Confidence 11 1111 3445555555554432222 112344555555554 22211 1122223444555555541
Q ss_pred --cccccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEcc
Q 041121 285 --NSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLS 362 (574)
Q Consensus 285 --N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~ 362 (574)
|.+++.. .......+++|++|+++
T Consensus 361 ~~~~~~~~~------------------------------------------------------~~~l~~~~~~L~~L~l~ 386 (592)
T 3ogk_B 361 EEGLVSQRG------------------------------------------------------LIALAQGCQELEYMAVY 386 (592)
T ss_dssp TTCCCCHHH------------------------------------------------------HHHHHHHCTTCSEEEEE
T ss_pred ccCccCHHH------------------------------------------------------HHHHHhhCccCeEEEee
Confidence 2222111 11112234455555554
Q ss_pred CCcccccCCccccc-cccCccccCC----CCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccC
Q 041121 363 LNNISGKIPKCFNN-FTAMTQERSS----DPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSS 437 (574)
Q Consensus 363 ~n~l~~~~~~~~~~-l~~L~~l~l~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~ 437 (574)
.|.+++..+..+.. +++|+.+++. .+.+...+. .......+..+++|+.|++++
T Consensus 387 ~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~---------------------~~~~~~~~~~~~~L~~L~L~~ 445 (592)
T 3ogk_B 387 VSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPL---------------------DNGVRSLLIGCKKLRRFAFYL 445 (592)
T ss_dssp ESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCC---------------------HHHHHHHHHHCTTCCEEEEEC
T ss_pred cCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchH---------------------HHHHHHHHHhCCCCCEEEEec
Confidence 44444333333322 4444444432 111110000 000011134566778888875
Q ss_pred Cc--CCCCCcHhhh-hcCCCCEEeCCCCcCccc-CCccccCCCCCCEEeCCCCccccc-CCCCccCCCCCCEEeccCCcC
Q 041121 438 NK--LNGAVPEEIM-DLVGLVALNLSRNHLTGQ-NSPKIGQLKSLDFLDLSRNQLVGG-IPSSLSPLSVLSVMDLSYNNL 512 (574)
Q Consensus 438 n~--l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~i~~~-~~~~l~~l~~L~~L~Ls~N~l 512 (574)
|. +++..+..+. .+++|++|+|++|++++. .+..+.++++|++|++++|.+++. .+..+..+++|+.|++++|++
T Consensus 446 ~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~i 525 (592)
T 3ogk_B 446 RQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRA 525 (592)
T ss_dssp CGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBC
T ss_pred CCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcC
Confidence 43 5544444443 377888888888887753 344456778888888888887643 333445677888888888887
Q ss_pred c
Q 041121 513 S 513 (574)
Q Consensus 513 ~ 513 (574)
+
T Consensus 526 t 526 (592)
T 3ogk_B 526 S 526 (592)
T ss_dssp C
T ss_pred C
Confidence 6
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=221.98 Aligned_cols=202 Identities=17% Similarity=0.171 Sum_probs=111.6
Q ss_pred CCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCccccc---------
Q 041121 227 SNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGF--------- 297 (574)
Q Consensus 227 ~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~--------- 297 (574)
++|++|+|++|.+. ..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..|..+..
T Consensus 104 ~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~ 181 (328)
T 4fcg_A 104 SHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181 (328)
T ss_dssp TTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEE
T ss_pred CCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhcc
Confidence 34444555555544 22334556677777777777776 55666777777777777777666666655432
Q ss_pred ccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCcccccc
Q 041121 298 LQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNF 377 (574)
Q Consensus 298 l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 377 (574)
+++| +.+++++|.++ .+|..+..+++|++|++++|.+++ +|..+.
T Consensus 182 l~~L-------------------------------~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~-- 226 (328)
T 4fcg_A 182 LVNL-------------------------------QSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIH-- 226 (328)
T ss_dssp STTC-------------------------------CEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGG--
T ss_pred CCCC-------------------------------CEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-Cchhhc--
Confidence 3333 44444444444 333444444444444444444442 222222
Q ss_pred ccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEE
Q 041121 378 TAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVAL 457 (574)
Q Consensus 378 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 457 (574)
.+++|++|++++|.+.+.+|..|.++++|++|
T Consensus 227 ------------------------------------------------~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L 258 (328)
T 4fcg_A 227 ------------------------------------------------HLPKLEELDLRGCTALRNYPPIFGGRAPLKRL 258 (328)
T ss_dssp ------------------------------------------------GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEE
T ss_pred ------------------------------------------------cCCCCCEEECcCCcchhhhHHHhcCCCCCCEE
Confidence 23334556666655555555555556666666
Q ss_pred eCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCc
Q 041121 458 NLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLS 513 (574)
Q Consensus 458 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~ 513 (574)
+|++|.+.+.+|..+.++++|++|++++|++.+.+|..+..+++|+.+++..|.+.
T Consensus 259 ~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 259 ILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp ECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred ECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 66665555555555556666666666666555555666666666666655555544
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.8e-25 Score=213.94 Aligned_cols=226 Identities=22% Similarity=0.195 Sum_probs=155.9
Q ss_pred EeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccC
Q 041121 211 IDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGR 290 (574)
Q Consensus 211 L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 290 (574)
++..+..+...+...++++++|++++|.++++.+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++.
T Consensus 12 ~~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 91 (276)
T 2z62_A 12 YQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91 (276)
T ss_dssp EECTTSCCSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred EEecCCCccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc
Confidence 44445555544444456788888888888887777777888888888888888866677788888888888888888776
Q ss_pred CCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCccccc-
Q 041121 291 IPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGK- 369 (574)
Q Consensus 291 ~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~- 369 (574)
.+..+..+++| +.+++++|.+.+..+..+..+++|++|++++|.+++.
T Consensus 92 ~~~~~~~l~~L-------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 140 (276)
T 2z62_A 92 ALGAFSGLSSL-------------------------------QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140 (276)
T ss_dssp CTTTTTTCTTC-------------------------------CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCC
T ss_pred ChhhhcCCccc-------------------------------cEEECCCCCccccCchhcccCCCCCEEECcCCccceec
Confidence 66677777776 6677777777666655666777777777777776642
Q ss_pred CCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhh
Q 041121 370 IPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIM 449 (574)
Q Consensus 370 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 449 (574)
+|..|.+ +++|++|++++|++++..+..|.
T Consensus 141 l~~~~~~--------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~ 170 (276)
T 2z62_A 141 LPEYFSN--------------------------------------------------LTNLEHLDLSSNKIQSIYCTDLR 170 (276)
T ss_dssp CCGGGGG--------------------------------------------------CTTCCEEECCSSCCCEECGGGGH
T ss_pred Cchhhcc--------------------------------------------------CCCCCEEECCCCCCCcCCHHHhh
Confidence 2444433 33357777777777766666666
Q ss_pred hcCCCC----EEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcccCCC
Q 041121 450 DLVGLV----ALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPT 518 (574)
Q Consensus 450 ~l~~L~----~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~ 518 (574)
.+.+|+ +|++++|++++..+..+.. .+|++|++++|++++..+..|..+++|+.|++++|++++..|.
T Consensus 171 ~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 171 VLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp HHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred hhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence 666666 6777777777655555443 3677777777777766666667777777777777777755553
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-25 Score=220.71 Aligned_cols=222 Identities=23% Similarity=0.246 Sum_probs=175.6
Q ss_pred CCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCcccccc
Q 041121 227 SNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFT 306 (574)
Q Consensus 227 ~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~ 306 (574)
..++.|+|++|.+..++. .+..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|
T Consensus 81 ~~l~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L----- 152 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPD-QAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRL----- 152 (328)
T ss_dssp TTCCEEEEESSCCSSCCS-CGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTC-----
T ss_pred cceeEEEccCCCchhcCh-hhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCC-----
Confidence 456666666666664433 3445777888888888877 66777777888888888888777 667777777777
Q ss_pred ccccccCccceeeeccccccccccccceEEecCceeccCCChhhcC---------CCCCCEEEccCCcccccCCcccccc
Q 041121 307 QQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQ---------FAFLQVLDLSLNNISGKIPKCFNNF 377 (574)
Q Consensus 307 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~---------~~~L~~L~L~~n~l~~~~~~~~~~l 377 (574)
+.+++++|++.+..|..+.. +++|++|++++|.++ .+|..+..
T Consensus 153 --------------------------~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~- 204 (328)
T 4fcg_A 153 --------------------------RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIAN- 204 (328)
T ss_dssp --------------------------CEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGG-
T ss_pred --------------------------CEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcC-
Confidence 77777777766666665543 777777777777776 55544433
Q ss_pred ccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEE
Q 041121 378 TAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVAL 457 (574)
Q Consensus 378 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 457 (574)
+++|++|++++|.++ .+|..+..+++|++|
T Consensus 205 -------------------------------------------------l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L 234 (328)
T 4fcg_A 205 -------------------------------------------------LQNLKSLKIRNSPLS-ALGPAIHHLPKLEEL 234 (328)
T ss_dssp -------------------------------------------------CTTCCEEEEESSCCC-CCCGGGGGCTTCCEE
T ss_pred -------------------------------------------------CCCCCEEEccCCCCC-cCchhhccCCCCCEE
Confidence 455699999999999 566689999999999
Q ss_pred eCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcccCCCc-chhcccCcccccCCC
Q 041121 458 NLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTG-TQLQSFNGSVYAGNP 534 (574)
Q Consensus 458 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~l~~~~l~~Np 534 (574)
+|++|.+.+.+|..|.++++|++|++++|++.+.+|..+..+++|+.|+|++|++.+.+|.. ..++.+..+.+..|.
T Consensus 235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999986 567777777776653
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.7e-27 Score=232.69 Aligned_cols=250 Identities=19% Similarity=0.146 Sum_probs=156.5
Q ss_pred ccccccccCcEEEccCCcccccCCC-CCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCccccccCC
Q 041121 120 SSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLP 198 (574)
Q Consensus 120 ~~~~l~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp 198 (574)
.+..+++ |++|++++|++++..+. |.++++|++|++++|++++..+ |..+++|++|++++|.++.++
T Consensus 29 ~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~--------- 96 (317)
T 3o53_A 29 LRQSAWN-VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL--------- 96 (317)
T ss_dssp HHTTGGG-CSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE---------
T ss_pred HhccCCC-CCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc---------
Confidence 4455666 88888888888876655 7888888888888888875554 778888888888888766432
Q ss_pred chhhcCCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCc
Q 041121 199 DLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLV 278 (574)
Q Consensus 199 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 278 (574)
..++|+.|++++|.+++..+..+++ |++|++++|.+++..+..+..+++|+
T Consensus 97 -----~~~~L~~L~l~~n~l~~~~~~~~~~------------------------L~~L~l~~N~l~~~~~~~~~~l~~L~ 147 (317)
T 3o53_A 97 -----VGPSIETLHAANNNISRVSCSRGQG------------------------KKNIYLANNKITMLRDLDEGCRSRVQ 147 (317)
T ss_dssp -----ECTTCCEEECCSSCCSEEEECCCSS------------------------CEEEECCSSCCCSGGGBCTGGGSSEE
T ss_pred -----CCCCcCEEECCCCccCCcCccccCC------------------------CCEEECCCCCCCCccchhhhccCCCC
Confidence 1245555555555555444333444 45555555555444444444455555
Q ss_pred EEEccCcccccCCCccc-ccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCC
Q 041121 279 ILDLGNNSFSGRIPDSM-GFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQ 357 (574)
Q Consensus 279 ~L~L~~N~l~~~~~~~~-~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~ 357 (574)
+|++++|.+++..+..+ ..+++| +.+++++|.+.+.. ....+++|+
T Consensus 148 ~L~Ls~N~l~~~~~~~~~~~l~~L-------------------------------~~L~L~~N~l~~~~--~~~~l~~L~ 194 (317)
T 3o53_A 148 YLDLKLNEIDTVNFAELAASSDTL-------------------------------EHLNLQYNFIYDVK--GQVVFAKLK 194 (317)
T ss_dssp EEECTTSCCCEEEGGGGGGGTTTC-------------------------------CEEECTTSCCCEEE--CCCCCTTCC
T ss_pred EEECCCCCCCcccHHHHhhccCcC-------------------------------CEEECCCCcCcccc--cccccccCC
Confidence 55555555544333333 234444 44555555544331 122367788
Q ss_pred EEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccC
Q 041121 358 VLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSS 437 (574)
Q Consensus 358 ~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~ 437 (574)
+|++++|++++. +..+.. +++|++|++++
T Consensus 195 ~L~Ls~N~l~~l-~~~~~~--------------------------------------------------l~~L~~L~L~~ 223 (317)
T 3o53_A 195 TLDLSSNKLAFM-GPEFQS--------------------------------------------------AAGVTWISLRN 223 (317)
T ss_dssp EEECCSSCCCEE-CGGGGG--------------------------------------------------GTTCSEEECTT
T ss_pred EEECCCCcCCcc-hhhhcc--------------------------------------------------cCcccEEECcC
Confidence 888888888743 333433 33457788888
Q ss_pred CcCCCCCcHhhhhcCCCCEEeCCCCcCc-ccCCccccCCCCCCEEeCCCC-cccccCCCC
Q 041121 438 NKLNGAVPEEIMDLVGLVALNLSRNHLT-GQNSPKIGQLKSLDFLDLSRN-QLVGGIPSS 495 (574)
Q Consensus 438 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~ 495 (574)
|.++ .+|..+..+++|++|++++|.+. +..+..+..++.|+.|+++++ .+++..+..
T Consensus 224 N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 224 NKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282 (317)
T ss_dssp SCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred Cccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhc
Confidence 8887 56667777888888888888887 666777778888888888744 555554443
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.2e-25 Score=213.59 Aligned_cols=226 Identities=21% Similarity=0.183 Sum_probs=186.1
Q ss_pred EEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCcccccccccc
Q 041121 231 FLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQF 310 (574)
Q Consensus 231 ~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~ 310 (574)
.++..+..+..++... .+++++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|
T Consensus 11 ~~~c~~~~l~~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--------- 78 (276)
T 2z62_A 11 TYQCMELNFYKIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL--------- 78 (276)
T ss_dssp EEECTTSCCSSCCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTC---------
T ss_pred eEEecCCCccccCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCC---------
Confidence 4666777666655422 2579999999999987777788999999999999999987777788888888
Q ss_pred ccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCcc
Q 041121 311 NRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTI 390 (574)
Q Consensus 311 ~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~ 390 (574)
+.+++++|.+.+..+..+..+++|++|++++|.+++..+..+.
T Consensus 79 ----------------------~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--------------- 121 (276)
T 2z62_A 79 ----------------------STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG--------------- 121 (276)
T ss_dssp ----------------------CEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCT---------------
T ss_pred ----------------------CEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcc---------------
Confidence 8889999998888888888889999999999888755444443
Q ss_pred ccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCC-CcHhhhhcCCCCEEeCCCCcCcccCC
Q 041121 391 KVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGA-VPEEIMDLVGLVALNLSRNHLTGQNS 469 (574)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~ 469 (574)
.+++|++|++++|.+++. +|..|..+++|++|++++|++++..+
T Consensus 122 -----------------------------------~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~ 166 (276)
T 2z62_A 122 -----------------------------------HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (276)
T ss_dssp -----------------------------------TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred -----------------------------------cCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH
Confidence 345579999999999864 58999999999999999999998888
Q ss_pred ccccCCCCCC----EEeCCCCcccccCCCCccCCCCCCEEeccCCcCcccCCCc-chhcccCcccccCCCCCCCCCC
Q 041121 470 PKIGQLKSLD----FLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTG-TQLQSFNGSVYAGNPELCGLPL 541 (574)
Q Consensus 470 ~~~~~l~~L~----~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~l~~~~l~~Np~~c~~~l 541 (574)
..|..+++|+ +|++++|++++..+..+... +|+.|++++|++++..+.. ..++.++.+++++||+.|+|+.
T Consensus 167 ~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp GGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSC-CEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred HHhhhhhhccccceeeecCCCcccccCccccCCC-cccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence 8888777777 99999999998777766654 8999999999999444433 4588999999999999999973
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.6e-27 Score=230.45 Aligned_cols=249 Identities=19% Similarity=0.162 Sum_probs=197.7
Q ss_pred hcCCCCCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCC--CC----------cCCcccEEEccCCcCCCCCC
Q 041121 8 SLRLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPL--SN----------ISSNFVSIDLSFNQLQGSIP 75 (574)
Q Consensus 8 l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~----------~~~~L~~L~Ls~n~i~~~~~ 75 (574)
+...++|++|++++|.+ .+|. .+... |++|++++|.++.. .. -.++|++|++++|++++..|
T Consensus 39 ~~~~~~L~~l~l~~n~l-~~p~---~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 112 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE-ADLG---QFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP 112 (312)
T ss_dssp EEEEEECTTHHHHCCTT-CCCH---HHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred EccCCCceeEeeccccc-ccHH---HHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH
Confidence 45667889999999999 6665 33333 88889999988653 11 14789999999999998888
Q ss_pred ccc--cCCCCCCEEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccccCCC-CCCCCCCC
Q 041121 76 DSS--QHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMK 152 (574)
Q Consensus 76 ~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~-l~~l~~L~ 152 (574)
..+ ..+++|++|++++|++++. |..+..+ ....+++ |++|++++|++++..+. |.++++|+
T Consensus 113 ~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l--------------~~~~~~~-L~~L~L~~N~l~~~~~~~~~~l~~L~ 176 (312)
T 1wwl_A 113 PPLLEATGPDLNILNLRNVSWATR-DAWLAEL--------------QQWLKPG-LKVLSIAQAHSLNFSCEQVRVFPALS 176 (312)
T ss_dssp CCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH--------------HTTCCTT-CCEEEEESCSCCCCCTTTCCCCSSCC
T ss_pred HHHHHhcCCCccEEEccCCCCcch-hHHHHHH--------------HHhhcCC-CcEEEeeCCCCccchHHHhccCCCCC
Confidence 876 8999999999999999866 6654432 1111266 99999999999988866 99999999
Q ss_pred EEEccCcccccc--cchhh--hccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCC--C-
Q 041121 153 RLYLSDNLLNGT--INKSI--GQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPP--L- 225 (574)
Q Consensus 153 ~L~L~~n~i~~~--~~~~~--~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~--~- 225 (574)
+|++++|++.+. .+..+ ..+++|++|++++|.++.++ .++...+..+++|++|++++|++++..|. .
T Consensus 177 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 250 (312)
T 1wwl_A 177 TLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS------GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250 (312)
T ss_dssp EEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHH------HHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC
T ss_pred EEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchH------HHHHHHHhcCCCCCEEECCCCcCCcccchhhhh
Confidence 999999998754 33444 88999999999999988543 12223256788999999999999986642 2
Q ss_pred -CCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCccccc
Q 041121 226 -PSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSG 289 (574)
Q Consensus 226 -~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 289 (574)
+++|++|++++|.|+.++...+ ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus 251 ~l~~L~~L~Ls~N~l~~ip~~~~---~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 251 WPSQLNSLNLSFTGLKQVPKGLP---AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCTTCCEEECTTSCCSSCCSSCC---SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred hcCCCCEEECCCCccChhhhhcc---CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 6899999999999996655332 8999999999999966 65 8899999999999999874
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-28 Score=263.61 Aligned_cols=394 Identities=13% Similarity=0.061 Sum_probs=251.0
Q ss_pred hhcCCCCCcEEECCCCCCCCC-CchhhhcCC-CCC-CcEEEccCCCC-CCC-----CCcCCcccEEEccCCcCCCC----
Q 041121 7 RSLRLHSLRYLNLEENNLANC-SDWFQVIGK-LHS-LKTLTSHSCYL-RPL-----SNISSNFVSIDLSFNQLQGS---- 73 (574)
Q Consensus 7 ~l~~l~~L~~L~Ls~n~i~~~-~~~~~~~~~-l~~-L~~L~l~~n~l-~~~-----~~~~~~L~~L~Ls~n~i~~~---- 73 (574)
.+..+++|++|+|++|.+++. .. .+.. ++. |++|++++|.- +.. ..-.++|++|+|++|.+++.
T Consensus 107 l~~~~~~L~~L~L~~~~i~~~~~~---~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~ 183 (592)
T 3ogk_B 107 ISNNLRQLKSVHFRRMIVSDLDLD---RLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKW 183 (592)
T ss_dssp HHHHCTTCCEEEEESCBCCHHHHH---HHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHH
T ss_pred HHhhCCCCCeEEeeccEecHHHHH---HHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhH
Confidence 344899999999999988765 33 3444 444 99999999872 211 12248999999999998765
Q ss_pred CCccccCCCCCCEEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccccCCCCCCCCCCCE
Q 041121 74 IPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKR 153 (574)
Q Consensus 74 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~l~~l~~L~~ 153 (574)
++..+..+++|++|++++|.+++.....+.. .+..+++ |++|++++|.+.+....+..+++|++
T Consensus 184 l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~---------------~~~~~~~-L~~L~L~~~~~~~l~~~~~~~~~L~~ 247 (592)
T 3ogk_B 184 LHELAQHNTSLEVLNFYMTEFAKISPKDLET---------------IARNCRS-LVSVKVGDFEILELVGFFKAAANLEE 247 (592)
T ss_dssp HHHHHHHCCCCCEEECTTCCCSSCCHHHHHH---------------HHHHCTT-CCEEECSSCBGGGGHHHHHHCTTCCE
T ss_pred HHHHHhcCCCccEEEeeccCCCccCHHHHHH---------------HHhhCCC-CcEEeccCccHHHHHHHHhhhhHHHh
Confidence 3345568899999999999987444443332 3445666 77777777777654333666777777
Q ss_pred EEccCcccc---cccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCC----CCC
Q 041121 154 LYLSDNLLN---GTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIP----PLP 226 (574)
Q Consensus 154 L~L~~n~i~---~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~----~~~ 226 (574)
|++++.... ...+..+..+++|+.|+++++... .+|.. +..+++|++|++++|.+++... ..+
T Consensus 248 L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~---------~l~~~-~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~ 317 (592)
T 3ogk_B 248 FCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN---------EMPIL-FPFAAQIRKLDLLYALLETEDHCTLIQKC 317 (592)
T ss_dssp EEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT---------TGGGG-GGGGGGCCEEEETTCCCCHHHHHHHHTTC
T ss_pred hcccccccccchHHHHHHhhccccccccCccccchh---------HHHHH-HhhcCCCcEEecCCCcCCHHHHHHHHHhC
Confidence 777643222 223345566677777777664322 23333 4556677777777777543221 236
Q ss_pred CCCcEEEcCCCcccccc-cccccCCCCccEEECCC-----------CCCCCC-CCcchhcCCCCcEEEccCcccccCCCc
Q 041121 227 SNSSFLNLSKNRFSRSI-SLCSISGSKLTYIDLSS-----------NLLSGK-LPDCWWMFDSLVILDLGNNSFSGRIPD 293 (574)
Q Consensus 227 ~~L~~L~L~~n~i~~~~-~~~~~~~~~L~~L~L~~-----------n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~ 293 (574)
++|++|+++ +.+.... +.....+++|++|++++ |.+++. .+..+..+++|++|+++.|.+++..+.
T Consensus 318 ~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~ 396 (592)
T 3ogk_B 318 PNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLE 396 (592)
T ss_dssp TTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHH
T ss_pred cCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHH
Confidence 788888888 4443322 22224578899999983 555532 222345688999999988888765544
Q ss_pred cccc-ccCccccccccccccCccceeeeccccccccccccceEEec----CceeccC-----CChhhcCCCCCCEEEccC
Q 041121 294 SMGF-LQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLK----SNKFHGK-----TPFQLCQFAFLQVLDLSL 363 (574)
Q Consensus 294 ~~~~-l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~----~n~~~~~-----~~~~~~~~~~L~~L~L~~ 363 (574)
.+.. +++| +.++++ .|.+++. ++..+..+++|++|++++
T Consensus 397 ~l~~~~~~L-------------------------------~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~ 445 (592)
T 3ogk_B 397 SIGTYLKNL-------------------------------CDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYL 445 (592)
T ss_dssp HHHHHCCSC-------------------------------CEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEEC
T ss_pred HHHhhCCCC-------------------------------cEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEec
Confidence 4443 6666 666664 5555543 223356678888888875
Q ss_pred Cc--ccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCC
Q 041121 364 NN--ISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLN 441 (574)
Q Consensus 364 n~--l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 441 (574)
+. +++.....+. ..+++|+.|++++|+++
T Consensus 446 ~~~~l~~~~~~~~~-------------------------------------------------~~~~~L~~L~L~~n~l~ 476 (592)
T 3ogk_B 446 RQGGLTDLGLSYIG-------------------------------------------------QYSPNVRWMLLGYVGES 476 (592)
T ss_dssp CGGGCCHHHHHHHH-------------------------------------------------HSCTTCCEEEECSCCSS
T ss_pred CCCCccHHHHHHHH-------------------------------------------------HhCccceEeeccCCCCC
Confidence 33 4322221111 12556788999988887
Q ss_pred CC-CcHhhhhcCCCCEEeCCCCcCccc-CCccccCCCCCCEEeCCCCcccccCCCCc-cCCCCCCEEeccCC
Q 041121 442 GA-VPEEIMDLVGLVALNLSRNHLTGQ-NSPKIGQLKSLDFLDLSRNQLVGGIPSSL-SPLSVLSVMDLSYN 510 (574)
Q Consensus 442 ~~-~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~i~~~~~~~l-~~l~~L~~L~Ls~N 510 (574)
+. ++..+.++++|++|+|++|.+++. .+..+..+++|++|++++|+++......+ ..++.+....+..+
T Consensus 477 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 477 DEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp HHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred HHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 42 344557788899999999987644 33344578889999999998876433333 34566665555544
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.2e-25 Score=214.46 Aligned_cols=110 Identities=26% Similarity=0.278 Sum_probs=63.4
Q ss_pred ccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccC
Q 041121 430 IKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSY 509 (574)
Q Consensus 430 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~ 509 (574)
|++|++++|++++..+..|.++++|++|+|++|++++..+..|..+++|+.|++++|+++...++.|..+++|+.|++++
T Consensus 102 L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~ 181 (290)
T 1p9a_G 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181 (290)
T ss_dssp CCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCC
Confidence 45566666666544445556666666666666666655555555566666666666666655555555566666666666
Q ss_pred CcCcccCCCc-chhcccCcccccCCCCCCCCC
Q 041121 510 NNLSGKIPTG-TQLQSFNGSVYAGNPELCGLP 540 (574)
Q Consensus 510 N~l~~~~p~~-~~~~~l~~~~l~~Np~~c~~~ 540 (574)
|+|+ .+|.. .....++.+++++|||.|+|.
T Consensus 182 N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 182 NSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp SCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred CcCC-ccChhhcccccCCeEEeCCCCccCcCc
Confidence 6665 44433 344455555566666666554
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-24 Score=208.68 Aligned_cols=205 Identities=22% Similarity=0.235 Sum_probs=122.7
Q ss_pred CCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCccccccc
Q 041121 228 NSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQ 307 (574)
Q Consensus 228 ~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~ 307 (574)
..+.++++++.++.++... .+++++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|
T Consensus 17 ~~~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L------ 87 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNL------ 87 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTC------
T ss_pred CCCEEEccCCCCCccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCC------
Confidence 4566777777777654322 2567777777777776555667777777777777777765444455555555
Q ss_pred cccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCC
Q 041121 308 QQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSD 387 (574)
Q Consensus 308 ~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~ 387 (574)
+++++++|.+....+..|..+++|++|++++|.+++..+..|..
T Consensus 88 -------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----------- 131 (270)
T 2o6q_A 88 -------------------------ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS----------- 131 (270)
T ss_dssp -------------------------CEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT-----------
T ss_pred -------------------------CEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCc-----------
Confidence 55666666665555555555556666666666555433333322
Q ss_pred CccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCccc
Q 041121 388 PTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQ 467 (574)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 467 (574)
+++|++|++++|.+++..+..|..+++|++|+|++|++++.
T Consensus 132 ---------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 132 ---------------------------------------LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp ---------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred ---------------------------------------CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence 23346666666666644444566666666666666666655
Q ss_pred CCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcccC
Q 041121 468 NSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKI 516 (574)
Q Consensus 468 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~ 516 (574)
.+..|.++++|++|++++|++++..+..|..+++|+.|++++|++.+..
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence 5555666666666666666666555555666666666666666665433
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-26 Score=239.62 Aligned_cols=78 Identities=24% Similarity=0.272 Sum_probs=45.9
Q ss_pred CcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCccc-ccCCCCccCCCCCCEEe
Q 041121 428 GLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLV-GGIPSSLSPLSVLSVMD 506 (574)
Q Consensus 428 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~l~~l~~L~~L~ 506 (574)
++|+.|+|++|.+++. |..|..+++|+.|+|++|.+++ +|..+..+++|+.|++++|.+. +..|..+..++.|+.++
T Consensus 191 ~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~ 268 (487)
T 3oja_A 191 AKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268 (487)
T ss_dssp TTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHH
T ss_pred CCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEe
Confidence 3456777777777643 3346666677777777776664 3445566666666666666665 33444455555554444
Q ss_pred c
Q 041121 507 L 507 (574)
Q Consensus 507 L 507 (574)
+
T Consensus 269 ~ 269 (487)
T 3oja_A 269 K 269 (487)
T ss_dssp H
T ss_pred c
Confidence 4
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=9.7e-27 Score=228.18 Aligned_cols=245 Identities=23% Similarity=0.216 Sum_probs=163.2
Q ss_pred CCCCeEeccCCcccCCCCC-CCCCCcEEEcCCCcccccc-ccccc-------CCCCccEEECCCCCCCCCCCcch--hcC
Q 041121 206 TSNPGIDISSNHFEGPIPP-LPSNSSFLNLSKNRFSRSI-SLCSI-------SGSKLTYIDLSSNLLSGKLPDCW--WMF 274 (574)
Q Consensus 206 ~~L~~L~l~~n~l~~~~~~-~~~~L~~L~L~~n~i~~~~-~~~~~-------~~~~L~~L~L~~n~l~~~~~~~~--~~l 274 (574)
++|+.+++++|.+ .+|. ....++.|+|++|.+.... +..+. .+++|++|++++|.+++..|..+ ..+
T Consensus 43 ~~L~~l~l~~n~l--~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 120 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATG 120 (312)
T ss_dssp EECTTHHHHCCTT--CCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCS
T ss_pred CCceeEeeccccc--ccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcC
Confidence 3455555555555 2222 2333667777777775422 22221 47888888888888887777765 788
Q ss_pred CCCcEEEccCcccccCCCcccccc-----cCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChh
Q 041121 275 DSLVILDLGNNSFSGRIPDSMGFL-----QNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQ 349 (574)
Q Consensus 275 ~~L~~L~L~~N~l~~~~~~~~~~l-----~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~ 349 (574)
++|++|++++|.+++. |..+..+ ++| +++++++|++.+..+..
T Consensus 121 ~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L-------------------------------~~L~L~~N~l~~~~~~~ 168 (312)
T 1wwl_A 121 PDLNILNLRNVSWATR-DAWLAELQQWLKPGL-------------------------------KVLSIAQAHSLNFSCEQ 168 (312)
T ss_dssp CCCSEEEEESCBCSSS-SSHHHHHHTTCCTTC-------------------------------CEEEEESCSCCCCCTTT
T ss_pred CCccEEEccCCCCcch-hHHHHHHHHhhcCCC-------------------------------cEEEeeCCCCccchHHH
Confidence 8888888888888866 7666666 666 77888888888777778
Q ss_pred hcCCCCCCEEEccCCcccccC--CccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCccccccc
Q 041121 350 LCQFAFLQVLDLSLNNISGKI--PKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTL 427 (574)
Q Consensus 350 ~~~~~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 427 (574)
+..+++|++|++++|++.+.. +..+ .+..+
T Consensus 169 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~------------------------------------------------~~~~l 200 (312)
T 1wwl_A 169 VRVFPALSTLDLSDNPELGERGLISAL------------------------------------------------CPLKF 200 (312)
T ss_dssp CCCCSSCCEEECCSCTTCHHHHHHHHS------------------------------------------------CTTSC
T ss_pred hccCCCCCEEECCCCCcCcchHHHHHH------------------------------------------------HhccC
Confidence 888888888888888865431 1111 01234
Q ss_pred CcccEEEccCCcCCCC---CcHhhhhcCCCCEEeCCCCcCcccCC-ccccCCCCCCEEeCCCCcccccCCCCccCCCCCC
Q 041121 428 GLIKSLELSSNKLNGA---VPEEIMDLVGLVALNLSRNHLTGQNS-PKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLS 503 (574)
Q Consensus 428 ~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~ 503 (574)
++|++|++++|.+++. ....+..+++|++|+|++|++++..| ..+..+++|++|++++|+++ .+|..+. ++|+
T Consensus 201 ~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~ 277 (312)
T 1wwl_A 201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLS 277 (312)
T ss_dssp TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEE
T ss_pred CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCce
Confidence 5567777777777621 11334566778888888887776553 45556777888888888777 4555554 6777
Q ss_pred EEeccCCcCcccCCCcchhcccCcccccCCCCC
Q 041121 504 VMDLSYNNLSGKIPTGTQLQSFNGSVYAGNPEL 536 (574)
Q Consensus 504 ~L~Ls~N~l~~~~p~~~~~~~l~~~~l~~Np~~ 536 (574)
.|++++|+|++. |....++.++.+++++||+.
T Consensus 278 ~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 278 VLDLSYNRLDRN-PSPDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp EEECCSSCCCSC-CCTTTSCEEEEEECTTCTTT
T ss_pred EEECCCCCCCCC-hhHhhCCCCCEEeccCCCCC
Confidence 888888887743 66556677777777777754
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-23 Score=202.96 Aligned_cols=204 Identities=24% Similarity=0.243 Sum_probs=136.0
Q ss_pred hcCCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEE
Q 041121 202 SRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILD 281 (574)
Q Consensus 202 ~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 281 (574)
+..+++++.++++++.++..++..++.++.|+|++|.+.+..+..+..+++|++|++++|.+++..+. ..+++|++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~ 83 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLD 83 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEE
T ss_pred ccccCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEE
Confidence 34555666666666666655444466777777777777777777777777777788777777643322 5667777777
Q ss_pred ccCcccccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEc
Q 041121 282 LGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDL 361 (574)
Q Consensus 282 L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L 361 (574)
+++|.++ .+|. .+..+++|++|++
T Consensus 84 Ls~N~l~-~l~~-------------------------------------------------------~~~~l~~L~~L~l 107 (290)
T 1p9a_G 84 LSHNQLQ-SLPL-------------------------------------------------------LGQTLPALTVLDV 107 (290)
T ss_dssp CCSSCCS-SCCC-------------------------------------------------------CTTTCTTCCEEEC
T ss_pred CCCCcCC-cCch-------------------------------------------------------hhccCCCCCEEEC
Confidence 7777665 3333 3445566677777
Q ss_pred cCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCC
Q 041121 362 SLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLN 441 (574)
Q Consensus 362 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 441 (574)
++|++++..+..|.+++ +|++|+|++|.++
T Consensus 108 ~~N~l~~l~~~~~~~l~--------------------------------------------------~L~~L~L~~N~l~ 137 (290)
T 1p9a_G 108 SFNRLTSLPLGALRGLG--------------------------------------------------ELQELYLKGNELK 137 (290)
T ss_dssp CSSCCCCCCSSTTTTCT--------------------------------------------------TCCEEECTTSCCC
T ss_pred CCCcCcccCHHHHcCCC--------------------------------------------------CCCEEECCCCCCC
Confidence 77776654444444333 3467777777777
Q ss_pred CCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcc
Q 041121 442 GAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSG 514 (574)
Q Consensus 442 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~ 514 (574)
+..+..|..+++|++|+|++|++++..+..|..+++|+.|++++|+++ .+|..+....+|+.+++++|++.+
T Consensus 138 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred ccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 666666677777777777777777666666677777777777777777 455556666677777777777763
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-23 Score=201.21 Aligned_cols=205 Identities=22% Similarity=0.246 Sum_probs=179.8
Q ss_pred CCCCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCc
Q 041121 206 TSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNN 285 (574)
Q Consensus 206 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 285 (574)
...+.++++++.++..+...+.++++|++++|.+.++.+..+..+++|++|++++|.++...+..|..+++|++|++++|
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 35677888888888655555778999999999999998888999999999999999999777778899999999999999
Q ss_pred ccccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCc
Q 041121 286 SFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNN 365 (574)
Q Consensus 286 ~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~ 365 (574)
.+++..+..+..+++| +.+++++|.+.+..+..|..+++|++|++++|.
T Consensus 96 ~l~~~~~~~~~~l~~L-------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 144 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNL-------------------------------AELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE 144 (270)
T ss_dssp CCCCCCTTTTTTCSSC-------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCcCCHhHcccccCC-------------------------------CEEECCCCccCeeCHHHhCcCcCCCEEECCCCc
Confidence 9998777788889999 899999999999888889999999999999999
Q ss_pred ccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCc
Q 041121 366 ISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVP 445 (574)
Q Consensus 366 l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 445 (574)
+++..+..|.. +++|++|++++|.+++..+
T Consensus 145 l~~~~~~~~~~--------------------------------------------------l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 145 LQSLPKGVFDK--------------------------------------------------LTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp CCCCCTTTTTT--------------------------------------------------CTTCCEEECCSSCCSCCCT
T ss_pred CCccCHhHccC--------------------------------------------------CcccceeEecCCcCcEeCh
Confidence 98655544544 4446999999999997777
Q ss_pred HhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCccccc
Q 041121 446 EEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGG 491 (574)
Q Consensus 446 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~ 491 (574)
..|..+++|++|+|++|++++..+..|..+++|+.|++++|++...
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 7899999999999999999988888899999999999999998753
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.8e-25 Score=229.11 Aligned_cols=244 Identities=21% Similarity=0.142 Sum_probs=149.1
Q ss_pred CCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCccccccc
Q 041121 228 NSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQ 307 (574)
Q Consensus 228 ~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~ 307 (574)
+|++|+|++|.+.+..+..+..+++|++|++++|.+++..| |..+++|++|++++|.+++.. ..++|
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L------ 101 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSI------ 101 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTC------
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCc------
Confidence 44444444444444444444445555555555555543322 444555555555555544221 11333
Q ss_pred cccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCC
Q 041121 308 QQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSD 387 (574)
Q Consensus 308 ~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~ 387 (574)
+.+++++|.+.+..+. .+++|+.|+|++|.+++..|..+..+++|+.|++++
T Consensus 102 -------------------------~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 153 (487)
T 3oja_A 102 -------------------------ETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL 153 (487)
T ss_dssp -------------------------CEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTT
T ss_pred -------------------------CEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCC
Confidence 4455555554443322 234455555555555544444555555555555555
Q ss_pred CccccccccccCCCccccccccCcccccccCCCcccc-cccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcc
Q 041121 388 PTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYR-STLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTG 466 (574)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 466 (574)
|.+... .+..+ ..+++|+.|+|++|.+++. +. +..+++|++|+|++|.+++
T Consensus 154 N~l~~~--------------------------~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~ 205 (487)
T 3oja_A 154 NEIDTV--------------------------NFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF 205 (487)
T ss_dssp SCCCEE--------------------------EGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE
T ss_pred CCCCCc--------------------------ChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCC
Confidence 444311 01111 2466789999999999855 32 3468999999999999997
Q ss_pred cCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCc-ccCCCc-chhcccCccccc-------CCCCCC
Q 041121 467 QNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLS-GKIPTG-TQLQSFNGSVYA-------GNPELC 537 (574)
Q Consensus 467 ~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~-~~~p~~-~~~~~l~~~~l~-------~Np~~c 537 (574)
.++ .|..+++|+.|++++|.+++ +|..+..+++|+.|++++|++. +.+|.. ..+..+..+.+. +||+.|
T Consensus 206 ~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c 283 (487)
T 3oja_A 206 MGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEEC 283 (487)
T ss_dssp ECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSCCC
T ss_pred CCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccccCCCcccc
Confidence 666 48899999999999999995 6777899999999999999998 444443 334445555554 899999
Q ss_pred CCCCC
Q 041121 538 GLPLP 542 (574)
Q Consensus 538 ~~~l~ 542 (574)
.|+..
T Consensus 284 ~~~~~ 288 (487)
T 3oja_A 284 TVPTL 288 (487)
T ss_dssp SSTTC
T ss_pred cCCcc
Confidence 88754
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-26 Score=246.89 Aligned_cols=408 Identities=13% Similarity=0.045 Sum_probs=208.3
Q ss_pred hhcCCCCCcEEECCCCC-CCCC---C--------chhh-hcCCCCCCcEEEccCCCCCCC--CC---cCCcccEEEccCC
Q 041121 7 RSLRLHSLRYLNLEENN-LANC---S--------DWFQ-VIGKLHSLKTLTSHSCYLRPL--SN---ISSNFVSIDLSFN 68 (574)
Q Consensus 7 ~l~~l~~L~~L~Ls~n~-i~~~---~--------~~~~-~~~~l~~L~~L~l~~n~l~~~--~~---~~~~L~~L~Ls~n 68 (574)
.+..+++|++|+++++. +.+. + .|.. .+..+++|++|++++|.+++. .. ..++|++|++++|
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 45667888888888765 2211 1 0111 234677888888888876654 11 2367888888877
Q ss_pred -cCCCC-CCccccCCCCCCEEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCc--ccc-cCC
Q 041121 69 -QLQGS-IPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNH--FTG-PIP 143 (574)
Q Consensus 69 -~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~--l~~-~~~ 143 (574)
.++.. ++..+..+++|++|++++|.+++..+..+.. ....+++ |++|++++|. +.. ...
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~---------------~~~~~~~-L~~L~l~~~~~~~~~~~l~ 204 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSH---------------FPDTYTS-LVSLNISCLASEVSFSALE 204 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGG---------------SCTTCCC-CCEEECTTCCSCCCHHHHH
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHH---------------HhhcCCc-CcEEEecccCCcCCHHHHH
Confidence 44432 3334456778888888887776554443332 2234556 8888888776 211 111
Q ss_pred C-CCCCCCCCEEEccCc-ccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeE-eccCCcccC
Q 041121 144 D-LGGFSSMKRLYLSDN-LLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGI-DISSNHFEG 220 (574)
Q Consensus 144 ~-l~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L-~l~~n~l~~ 220 (574)
. +..+++|++|++++| .+. .++..+..+++|++|+++.+... +..+.+.+ ++.. +..+++|+.+ .+......
T Consensus 205 ~l~~~~~~L~~L~L~~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~-l~~~-l~~~~~L~~Ls~~~~~~~~- 279 (594)
T 2p1m_B 205 RLVTRCPNLKSLKLNRAVPLE-KLATLLQRAPQLEELGTGGYTAE-VRPDVYSG-LSVA-LSGCKELRCLSGFWDAVPA- 279 (594)
T ss_dssp HHHHHCTTCCEEECCTTSCHH-HHHHHHHHCTTCSEEECSBCCCC-CCHHHHHH-HHHH-HHTCTTCCEEECCBTCCGG-
T ss_pred HHHHhCCCCcEEecCCCCcHH-HHHHHHhcCCcceEcccccccCc-cchhhHHH-HHHH-HhcCCCcccccCCcccchh-
Confidence 1 234578888888877 333 36667777788888877655321 11112221 2221 4566666666 23222111
Q ss_pred CCCC---CCCCCcEEEcCCCccccccccc-ccCCCCccEEECCCCCCCCC-CCcchhcCCCCcEEEccC---------cc
Q 041121 221 PIPP---LPSNSSFLNLSKNRFSRSISLC-SISGSKLTYIDLSSNLLSGK-LPDCWWMFDSLVILDLGN---------NS 286 (574)
Q Consensus 221 ~~~~---~~~~L~~L~L~~n~i~~~~~~~-~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~---------N~ 286 (574)
.++. .+++|++|++++|.++...... +..+++|++|++++| +... .+.....+++|++|++++ +.
T Consensus 280 ~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~ 358 (594)
T 2p1m_B 280 YLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVA 358 (594)
T ss_dssp GGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSC
T ss_pred hHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCC
Confidence 1111 1355666666665544322111 224455666666555 2211 111222355566665532 22
Q ss_pred cccCCCcccc-cccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhc-CCCCCCEEEcc--
Q 041121 287 FSGRIPDSMG-FLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLC-QFAFLQVLDLS-- 362 (574)
Q Consensus 287 l~~~~~~~~~-~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~-~~~~L~~L~L~-- 362 (574)
+++.....+. .+++| +.+.+..+.++......+. .+++|++|+++
T Consensus 359 l~~~~l~~l~~~~~~L-------------------------------~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~ 407 (594)
T 2p1m_B 359 LTEQGLVSVSMGCPKL-------------------------------ESVLYFCRQMTNAALITIARNRPNMTRFRLCII 407 (594)
T ss_dssp CCHHHHHHHHHHCTTC-------------------------------CEEEEEESCCCHHHHHHHHHHCTTCCEEEEEES
T ss_pred CCHHHHHHHHHhchhH-------------------------------HHHHHhcCCcCHHHHHHHHhhCCCcceeEeecc
Confidence 2211111111 12333 3444444444332222222 34555555555
Q ss_pred C----CcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCC
Q 041121 363 L----NNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSN 438 (574)
Q Consensus 363 ~----n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n 438 (574)
+ +.++....+. .....+..+++|+.|++++
T Consensus 408 ~~~~~~~l~~~~~~~---------------------------------------------~~~~l~~~~~~L~~L~L~~- 441 (594)
T 2p1m_B 408 EPKAPDYLTLEPLDI---------------------------------------------GFGAIVEHCKDLRRLSLSG- 441 (594)
T ss_dssp STTCCCTTTCCCTHH---------------------------------------------HHHHHHHHCTTCCEEECCS-
T ss_pred cCCCcccccCCchhh---------------------------------------------HHHHHHhhCCCccEEeecC-
Confidence 2 2222110000 0001123455677777766
Q ss_pred cCCCCCcHhhhh-cCCCCEEeCCCCcCcccCCccc-cCCCCCCEEeCCCCcccccCCC-CccCCCCCCEEeccCCcCc
Q 041121 439 KLNGAVPEEIMD-LVGLVALNLSRNHLTGQNSPKI-GQLKSLDFLDLSRNQLVGGIPS-SLSPLSVLSVMDLSYNNLS 513 (574)
Q Consensus 439 ~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N~i~~~~~~-~l~~l~~L~~L~Ls~N~l~ 513 (574)
.+++..+..+.. +++|++|+|++|.+++.....+ .++++|++|++++|.+++.... .+..+++|+.|++++|+++
T Consensus 442 ~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 442 LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 555444444444 6777777777777765444333 5577777777777777543322 3445677777777777764
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.90 E-value=3e-26 Score=245.92 Aligned_cols=394 Identities=12% Similarity=0.026 Sum_probs=261.4
Q ss_pred hhhcCCCCCcEEECCCCCCCCC-CchhhhcC-CCCCCcEEEccCC-CCCCC-----CCcCCcccEEEccCCcCCCCCCcc
Q 041121 6 MRSLRLHSLRYLNLEENNLANC-SDWFQVIG-KLHSLKTLTSHSC-YLRPL-----SNISSNFVSIDLSFNQLQGSIPDS 77 (574)
Q Consensus 6 ~~l~~l~~L~~L~Ls~n~i~~~-~~~~~~~~-~l~~L~~L~l~~n-~l~~~-----~~~~~~L~~L~Ls~n~i~~~~~~~ 77 (574)
..+..+++|++|+|++|.+++. .. .+. .+++|++|++++| .++.. ..-.++|++|++++|.+++..+..
T Consensus 99 ~l~~~~~~L~~L~L~~~~~~~~~~~---~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~ 175 (594)
T 2p1m_B 99 AMSSSYTWLEEIRLKRMVVTDDCLE---LIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHW 175 (594)
T ss_dssp HHHHHCTTCCEEEEESCBCCHHHHH---HHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGG
T ss_pred HHHHhCCCCCeEEeeCcEEcHHHHH---HHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHH
Confidence 3346789999999999998766 33 454 6899999999999 55442 223489999999999987655444
Q ss_pred c----cCCCCCCEEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCC-cccccCCC-CCCCCCC
Q 041121 78 S----QHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVN-HFTGPIPD-LGGFSSM 151 (574)
Q Consensus 78 ~----~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n-~l~~~~~~-l~~l~~L 151 (574)
+ ..+++|++|++++|. .......+.. .+..+++ |++|++++| .+.+ .+. +..+++|
T Consensus 176 l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~---------------l~~~~~~-L~~L~L~~~~~~~~-l~~~~~~~~~L 237 (594)
T 2p1m_B 176 LSHFPDTYTSLVSLNISCLA-SEVSFSALER---------------LVTRCPN-LKSLKLNRAVPLEK-LATLLQRAPQL 237 (594)
T ss_dssp GGGSCTTCCCCCEEECTTCC-SCCCHHHHHH---------------HHHHCTT-CCEEECCTTSCHHH-HHHHHHHCTTC
T ss_pred HHHHhhcCCcCcEEEecccC-CcCCHHHHHH---------------HHHhCCC-CcEEecCCCCcHHH-HHHHHhcCCcc
Confidence 4 477899999999987 2122232222 2344677 999999998 4444 444 7788999
Q ss_pred CEEEccC-------cccccccchhhhccCCCCEE-EccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCC-
Q 041121 152 KRLYLSD-------NLLNGTINKSIGQIFKLEIT-CLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPI- 222 (574)
Q Consensus 152 ~~L~L~~-------n~i~~~~~~~~~~l~~L~~L-~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~- 222 (574)
++|+++. +.+.+ .+..+.++++|+.| .+.+... +.++.. ...+++|++|++++|.+++..
T Consensus 238 ~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~---------~~l~~~-~~~~~~L~~L~L~~~~l~~~~l 306 (594)
T 2p1m_B 238 EELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP---------AYLPAV-YSVCSRLTTLNLSYATVQSYDL 306 (594)
T ss_dssp SEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG---------GGGGGG-HHHHTTCCEEECTTCCCCHHHH
T ss_pred eEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch---------hhHHHH-HHhhCCCCEEEccCCCCCHHHH
Confidence 9999554 44443 44578899999998 3433221 233333 446789999999999866422
Q ss_pred ---CCCCCCCcEEEcCCCcccccccccc-cCCCCccEEECCC---------CCCCCCCCcch-hcCCCCcEEEccCcccc
Q 041121 223 ---PPLPSNSSFLNLSKNRFSRSISLCS-ISGSKLTYIDLSS---------NLLSGKLPDCW-WMFDSLVILDLGNNSFS 288 (574)
Q Consensus 223 ---~~~~~~L~~L~L~~n~i~~~~~~~~-~~~~~L~~L~L~~---------n~l~~~~~~~~-~~l~~L~~L~L~~N~l~ 288 (574)
...+++|++|++++| +.......+ ..+++|++|++++ +.+++.....+ .++++|+.|+++.|.++
T Consensus 307 ~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~ 385 (594)
T 2p1m_B 307 VKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMT 385 (594)
T ss_dssp HHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCC
T ss_pred HHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcC
Confidence 123689999999988 443222222 2478999999843 44543222223 35899999999988887
Q ss_pred cCCCcccc-cccCccccccccccccCccceeeeccccccccccccceEEec--C----ceeccCC-----ChhhcCCCCC
Q 041121 289 GRIPDSMG-FLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLK--S----NKFHGKT-----PFQLCQFAFL 356 (574)
Q Consensus 289 ~~~~~~~~-~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~--~----n~~~~~~-----~~~~~~~~~L 356 (574)
+.....+. .+++| +.++++ + +.++... +..+..+++|
T Consensus 386 ~~~~~~l~~~~~~L-------------------------------~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L 434 (594)
T 2p1m_B 386 NAALITIARNRPNM-------------------------------TRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDL 434 (594)
T ss_dssp HHHHHHHHHHCTTC-------------------------------CEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTC
T ss_pred HHHHHHHHhhCCCc-------------------------------ceeEeecccCCCcccccCCchhhHHHHHHhhCCCc
Confidence 65444443 46777 777777 3 3444211 1225678899
Q ss_pred CEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEcc
Q 041121 357 QVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELS 436 (574)
Q Consensus 357 ~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls 436 (574)
++|++++ .+++.....+.. .+++|+.|+++
T Consensus 435 ~~L~L~~-~l~~~~~~~l~~-------------------------------------------------~~~~L~~L~L~ 464 (594)
T 2p1m_B 435 RRLSLSG-LLTDKVFEYIGT-------------------------------------------------YAKKMEMLSVA 464 (594)
T ss_dssp CEEECCS-SCCHHHHHHHHH-------------------------------------------------HCTTCCEEEEE
T ss_pred cEEeecC-cccHHHHHHHHH-------------------------------------------------hchhccEeecc
Confidence 9999977 554322222211 24557899999
Q ss_pred CCcCCCCCcHhh-hhcCCCCEEeCCCCcCcccCCc-cccCCCCCCEEeCCCCcccccCCCCc-cCCCCCCEEeccCCcCc
Q 041121 437 SNKLNGAVPEEI-MDLVGLVALNLSRNHLTGQNSP-KIGQLKSLDFLDLSRNQLVGGIPSSL-SPLSVLSVMDLSYNNLS 513 (574)
Q Consensus 437 ~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~i~~~~~~~l-~~l~~L~~L~Ls~N~l~ 513 (574)
+|.+++.....+ .++++|++|+|++|.+++.... ....+++|++|++++|+++......+ ..++.|+...+..+.-.
T Consensus 465 ~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~ 544 (594)
T 2p1m_B 465 FAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAP 544 (594)
T ss_dssp SCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSCG
T ss_pred CCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCcc
Confidence 998875544444 6789999999999998644333 34557899999999998864333333 45677776666666543
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.5e-23 Score=199.62 Aligned_cols=202 Identities=18% Similarity=0.166 Sum_probs=139.4
Q ss_pred CCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCccccc
Q 041121 226 PSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQF 305 (574)
Q Consensus 226 ~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~ 305 (574)
+.+++.|++++|.+.... .+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|
T Consensus 40 l~~L~~L~l~~~~i~~~~--~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L---- 111 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQ--GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNL---- 111 (272)
T ss_dssp HTTCCEEECTTSCCCCCT--TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTC----
T ss_pred ccceeeeeeCCCCccccc--ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCC----
Confidence 455566666666655443 244567777777777777642 356677777777777777776666666666666
Q ss_pred cccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccC
Q 041121 306 TQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERS 385 (574)
Q Consensus 306 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l 385 (574)
+.+++++|++.+..+..+..+++|++|++++|.+++..+..|..
T Consensus 112 ---------------------------~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--------- 155 (272)
T 3rfs_A 112 ---------------------------KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK--------- 155 (272)
T ss_dssp ---------------------------CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT---------
T ss_pred ---------------------------CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhcc---------
Confidence 66777777776666666677777777777777776544443433
Q ss_pred CCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCc
Q 041121 386 SDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLT 465 (574)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 465 (574)
+++|+.|++++|.+++..+..|..+++|++|++++|+++
T Consensus 156 -----------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 156 -----------------------------------------LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp -----------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred -----------------------------------------CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 334577888888887666666777888888888888888
Q ss_pred ccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcccCCCc
Q 041121 466 GQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTG 519 (574)
Q Consensus 466 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~ 519 (574)
+..+..|..+++|+.|++++|++.+. ++.|+.++++.|+++|.+|..
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 195 SVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCT
T ss_pred ccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCc
Confidence 77777777888888888888877633 446777888888888777763
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-22 Score=190.85 Aligned_cols=212 Identities=21% Similarity=0.186 Sum_probs=146.1
Q ss_pred CccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCccccccccccccCccceeeeccccccccccc
Q 041121 252 KLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWE 331 (574)
Q Consensus 252 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~ 331 (574)
..++++++++.++ .+|..+. ++++.|++++|.+++..+..+..+++|
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L------------------------------ 61 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKL------------------------------ 61 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTC------------------------------
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccC------------------------------
Confidence 3455666666665 3333322 356666666666665555556666666
Q ss_pred cceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCc
Q 041121 332 ERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDK 411 (574)
Q Consensus 332 ~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (574)
+.+++++|.+.+..+..|..+++|++|+|++|++++..+..|..
T Consensus 62 -~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----------------------------------- 105 (251)
T 3m19_A 62 -TWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDH----------------------------------- 105 (251)
T ss_dssp -CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT-----------------------------------
T ss_pred -CEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcc-----------------------------------
Confidence 56666666666666666777888888888888888555555544
Q ss_pred ccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCccccc
Q 041121 412 VMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGG 491 (574)
Q Consensus 412 ~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~ 491 (574)
+++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|++++.
T Consensus 106 ---------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 106 ---------------LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp ---------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred ---------------cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 34468999999999877777788999999999999999988888899999999999999999988
Q ss_pred CCCCccCCCCCCEEeccCCcCcccCCCcchhc------ccCcccccCCCCCCCCCCCCCCCCC
Q 041121 492 IPSSLSPLSVLSVMDLSYNNLSGKIPTGTQLQ------SFNGSVYAGNPELCGLPLPNKCRDE 548 (574)
Q Consensus 492 ~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~------~l~~~~l~~Np~~c~~~l~~~c~~~ 548 (574)
.+..|..+++|+.|++++|++++.......+. .....+..|+. .|+.+-...|..+
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~C~~~ 232 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQN-LHESPDGVTCSDG 232 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHHSGGGBCC--------CCGGGCBBTTS
T ss_pred CHHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHhcccceeeccCcc-cccCCCcCccCCC
Confidence 88889999999999999999986544432211 11122233442 4555555567654
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.89 E-value=8.5e-23 Score=192.03 Aligned_cols=202 Identities=17% Similarity=0.242 Sum_probs=112.9
Q ss_pred CCCCCcEEEcCCCcccccccccccCCCCccEEECCCCC-CCCCCCcchhcCCCCcEEEccC-cccccCCCcccccccCcc
Q 041121 225 LPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNL-LSGKLPDCWWMFDSLVILDLGN-NSFSGRIPDSMGFLQNIQ 302 (574)
Q Consensus 225 ~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~ 302 (574)
.+.++++|++++|.++++.+..|..+++|++|++++|. ++...+.+|.++++|++|++++ |.+++..+..
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~-------- 100 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA-------- 100 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS--------
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH--------
Confidence 44566666666666666666566666666666666665 6545555666666666666665 6665444444
Q ss_pred ccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCcc
Q 041121 303 TQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQ 382 (574)
Q Consensus 303 ~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 382 (574)
|..+++|++|++++|++++ +|. |..+++|
T Consensus 101 -----------------------------------------------f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L-- 129 (239)
T 2xwt_C 101 -----------------------------------------------LKELPLLKFLGIFNTGLKM-FPD-LTKVYST-- 129 (239)
T ss_dssp -----------------------------------------------EECCTTCCEEEEEEECCCS-CCC-CTTCCBC--
T ss_pred -----------------------------------------------hCCCCCCCEEeCCCCCCcc-ccc-ccccccc--
Confidence 4445555555555555553 332 3332222
Q ss_pred ccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCC-cCCCCCcHhhhhcCCCC-EEeCC
Q 041121 383 ERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSN-KLNGAVPEEIMDLVGLV-ALNLS 460 (574)
Q Consensus 383 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~-~L~Ls 460 (574)
..|++|++++| .+++..+..|.++++|+ +|+++
T Consensus 130 ---------------------------------------------~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~ 164 (239)
T 2xwt_C 130 ---------------------------------------------DIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLY 164 (239)
T ss_dssp ---------------------------------------------CSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECC
T ss_pred ---------------------------------------------ccccEEECCCCcchhhcCcccccchhcceeEEEcC
Confidence 11235666666 55544444566666666 66666
Q ss_pred CCcCcccCCccccCCCCCCEEeCCCCc-ccccCCCCccCC-CCCCEEeccCCcCcccCCCcchhcccCcccccCC
Q 041121 461 RNHLTGQNSPKIGQLKSLDFLDLSRNQ-LVGGIPSSLSPL-SVLSVMDLSYNNLSGKIPTGTQLQSFNGSVYAGN 533 (574)
Q Consensus 461 ~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~l~~l-~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~l~~N 533 (574)
+|+++.+.+..|.. ++|++|++++|+ ++...+..|..+ ++|+.|++++|+++ .+|.. .+..++.+.+.++
T Consensus 165 ~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~-~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 165 NNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK-GLEHLKELIARNT 236 (239)
T ss_dssp SCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT-TCTTCSEEECTTC
T ss_pred CCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh-HhccCceeeccCc
Confidence 66665444444444 566666666663 665555556666 66666666666665 44443 4455555555544
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.88 E-value=9.9e-23 Score=202.94 Aligned_cols=240 Identities=17% Similarity=0.112 Sum_probs=152.6
Q ss_pred CeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCC-CCcchhcCCCCcE-EEccCcc
Q 041121 209 PGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGK-LPDCWWMFDSLVI-LDLGNNS 286 (574)
Q Consensus 209 ~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~-L~L~~N~ 286 (574)
+.++.++++++.++...+.++++|+|++|+|+.+++.+|.++++|++|+|++|.+.+. .+.+|.+++++.+ +.++.|+
T Consensus 12 ~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp TEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred CEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence 4567777777755444567888899999988888888888888999999999887654 3457888887765 5566788
Q ss_pred cccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccC-Cc
Q 041121 287 FSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSL-NN 365 (574)
Q Consensus 287 l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~-n~ 365 (574)
+++..+..|..+++| +.+++++|++....+..+.....+..+++.+ +.
T Consensus 92 l~~l~~~~f~~l~~L-------------------------------~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~ 140 (350)
T 4ay9_X 92 LLYINPEAFQNLPNL-------------------------------QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 140 (350)
T ss_dssp CCEECTTSBCCCTTC-------------------------------CEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTT
T ss_pred ccccCchhhhhcccc-------------------------------ccccccccccccCCchhhcccchhhhhhhccccc
Confidence 887778888888888 7888888888877776777777788888865 56
Q ss_pred ccccCCccccccc-cCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccC-CcCCCC
Q 041121 366 ISGKIPKCFNNFT-AMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSS-NKLNGA 443 (574)
Q Consensus 366 l~~~~~~~~~~l~-~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~ 443 (574)
+....+..|..+. .++.+++++|.+..++... + ...+|++|++++ |.++..
T Consensus 141 i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~--------------------------f-~~~~L~~l~l~~~n~l~~i 193 (350)
T 4ay9_X 141 IHTIERNSFVGLSFESVILWLNKNGIQEIHNSA--------------------------F-NGTQLDELNLSDNNNLEEL 193 (350)
T ss_dssp CCEECTTSSTTSBSSCEEEECCSSCCCEECTTS--------------------------S-TTEEEEEEECTTCTTCCCC
T ss_pred cccccccchhhcchhhhhhccccccccCCChhh--------------------------c-cccchhHHhhccCCcccCC
Confidence 6655555665554 3444555555443221110 0 122356666653 445433
Q ss_pred CcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCC-cccccCCCCccCCCCCCEEeccCCc
Q 041121 444 VPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRN-QLVGGIPSSLSPLSVLSVMDLSYNN 511 (574)
Q Consensus 444 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~l~~l~~L~~L~Ls~N~ 511 (574)
.++.|.++++|++|+|++|+|+.+.+..| .+|+.|.+.++ .++ ..| .+..+++|+.++++++.
T Consensus 194 ~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~-~lP-~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 194 PNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLK-KLP-TLEKLVALMEASLTYPS 257 (350)
T ss_dssp CTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCC-CCC-CTTTCCSCCEEECSCHH
T ss_pred CHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcC-cCC-CchhCcChhhCcCCCCc
Confidence 33456666666666666666664444333 33444443333 233 333 25556666666665443
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.88 E-value=4.4e-22 Score=190.92 Aligned_cols=226 Identities=18% Similarity=0.203 Sum_probs=170.5
Q ss_pred CEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCCCCCCCcE
Q 041121 152 KRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSF 231 (574)
Q Consensus 152 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~ 231 (574)
..+++.++.+... ..+..+++|+.|++++|.++.++. +..+ ++|++
T Consensus 22 ~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~~~-----------l~~l---------------------~~L~~ 67 (272)
T 3rfs_A 22 IKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSVQG-----------IQYL---------------------PNVRY 67 (272)
T ss_dssp HHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCCTT-----------GGGC---------------------TTCCE
T ss_pred HHHHhcCcccccc--cccccccceeeeeeCCCCcccccc-----------cccC---------------------CCCcE
Confidence 3344444544422 335567788888888877764431 2333 45555
Q ss_pred EEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCccccccccccc
Q 041121 232 LNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFN 311 (574)
Q Consensus 232 L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~ 311 (574)
|++++|.+.+.. .+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|
T Consensus 68 L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L---------- 135 (272)
T 3rfs_A 68 LALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNL---------- 135 (272)
T ss_dssp EECTTSCCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC----------
T ss_pred EECCCCCCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCC----------
Confidence 555555555432 45577888888888888887777778888888888888888887777777888888
Q ss_pred cCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccc
Q 041121 312 RRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIK 391 (574)
Q Consensus 312 ~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~ 391 (574)
+.+++++|.+.+..+..+..+++|++|++++|++++..+..|..
T Consensus 136 ---------------------~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------------- 179 (272)
T 3rfs_A 136 ---------------------TYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK--------------- 179 (272)
T ss_dssp ---------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT---------------
T ss_pred ---------------------CEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcC---------------
Confidence 88888888888777777888999999999999998665555544
Q ss_pred cccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCcc
Q 041121 392 VYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPK 471 (574)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 471 (574)
+++|++|++++|.+++..+..|..+++|++|++++|.+.+
T Consensus 180 -----------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~----- 219 (272)
T 3rfs_A 180 -----------------------------------LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC----- 219 (272)
T ss_dssp -----------------------------------CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-----
T ss_pred -----------------------------------CccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-----
Confidence 3446899999999998888888999999999999998873
Q ss_pred ccCCCCCCEEeCCCCcccccCCCCccCCCC
Q 041121 472 IGQLKSLDFLDLSRNQLVGGIPSSLSPLSV 501 (574)
Q Consensus 472 ~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~ 501 (574)
.++.|+.|+++.|.+++.+|..++.+..
T Consensus 220 --~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 220 --TCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp --CTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred --cCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 4668999999999999999988776543
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.2e-22 Score=189.17 Aligned_cols=177 Identities=13% Similarity=0.099 Sum_probs=136.5
Q ss_pred CCcEEEccCcccccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCce-eccCCChhhcCCC
Q 041121 276 SLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNK-FHGKTPFQLCQFA 354 (574)
Q Consensus 276 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~-~~~~~~~~~~~~~ 354 (574)
+|++|++++|.+++..+..|..+++| +.+++++|+ +..+.+..|..++
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L-------------------------------~~L~l~~n~~l~~i~~~~f~~l~ 80 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNI-------------------------------SRIYVSIDVTLQQLESHSFYNLS 80 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTC-------------------------------CEEEEECCSSCCEECTTTEESCT
T ss_pred cccEEEEeCCcceEECHHHccCCCCC-------------------------------cEEeCCCCCCcceeCHhHcCCCc
Confidence 55566666666555555455555555 556666664 5555566777888
Q ss_pred CCCEEEccC-CcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEE
Q 041121 355 FLQVLDLSL-NNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSL 433 (574)
Q Consensus 355 ~L~~L~L~~-n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 433 (574)
+|++|++++ |.++...+..|.++++ |++|
T Consensus 81 ~L~~L~l~~~n~l~~i~~~~f~~l~~--------------------------------------------------L~~L 110 (239)
T 2xwt_C 81 KVTHIEIRNTRNLTYIDPDALKELPL--------------------------------------------------LKFL 110 (239)
T ss_dssp TCCEEEEEEETTCCEECTTSEECCTT--------------------------------------------------CCEE
T ss_pred CCcEEECCCCCCeeEcCHHHhCCCCC--------------------------------------------------CCEE
Confidence 999999998 9998666666655444 5999
Q ss_pred EccCCcCCCCCcHhhhhcCCCC---EEeCCCC-cCcccCCccccCCCCCC-EEeCCCCcccccCCCCccCCCCCCEEecc
Q 041121 434 ELSSNKLNGAVPEEIMDLVGLV---ALNLSRN-HLTGQNSPKIGQLKSLD-FLDLSRNQLVGGIPSSLSPLSVLSVMDLS 508 (574)
Q Consensus 434 ~Ls~n~l~~~~~~~~~~l~~L~---~L~Ls~N-~l~~~~~~~~~~l~~L~-~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls 508 (574)
++++|.+++ +|. |..+++|+ +|++++| ++++..+..|.++++|+ +|++++|+++.+.+..|.. ++|+.|+++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence 999999985 665 88899998 9999999 99988888899999999 9999999999666666666 899999999
Q ss_pred CCc-CcccCCCc-chh-cccCcccccCCCCC
Q 041121 509 YNN-LSGKIPTG-TQL-QSFNGSVYAGNPEL 536 (574)
Q Consensus 509 ~N~-l~~~~p~~-~~~-~~l~~~~l~~Np~~ 536 (574)
+|+ +++..+.. ..+ ..++.+++++|+..
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 995 98444443 345 78999999999754
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-21 Score=185.62 Aligned_cols=183 Identities=21% Similarity=0.240 Sum_probs=152.7
Q ss_pred CCCcEEEccCcccccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCC
Q 041121 275 DSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFA 354 (574)
Q Consensus 275 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~ 354 (574)
...+.++++++.++ .+|..+. +.+ +.+++++|.+.+..+..|..++
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l-------------------------------~~L~L~~n~l~~~~~~~~~~l~ 59 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADT-------------------------------EKLDLQSTGLATLSDATFRGLT 59 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTC-------------------------------CEEECTTSCCCCCCTTTTTTCT
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCC-------------------------------CEEEccCCCcCccCHhHhcCcc
Confidence 35678888888887 4454443 344 7788888888888887888888
Q ss_pred CCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEE
Q 041121 355 FLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLE 434 (574)
Q Consensus 355 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 434 (574)
+|++|+|++|.+++..+..|.+ +++|++|+
T Consensus 60 ~L~~L~L~~n~l~~~~~~~~~~--------------------------------------------------l~~L~~L~ 89 (251)
T 3m19_A 60 KLTWLNLDYNQLQTLSAGVFDD--------------------------------------------------LTELGTLG 89 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTT--------------------------------------------------CTTCCEEE
T ss_pred cCCEEECCCCcCCccCHhHhcc--------------------------------------------------CCcCCEEE
Confidence 8888888888888666555544 44469999
Q ss_pred ccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcc
Q 041121 435 LSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSG 514 (574)
Q Consensus 435 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~ 514 (574)
+++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|++++..+..|..+++|+.|+|++|++++
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 99999998888889999999999999999998888889999999999999999998888889999999999999999995
Q ss_pred cCCCc-chhcccCcccccCCCCCCC-CCC
Q 041121 515 KIPTG-TQLQSFNGSVYAGNPELCG-LPL 541 (574)
Q Consensus 515 ~~p~~-~~~~~l~~~~l~~Np~~c~-~~l 541 (574)
..|.. ..+..++.+++++|||.|+ |.+
T Consensus 170 ~~~~~~~~l~~L~~L~l~~N~~~c~~~~~ 198 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFGNQFDCSRCEI 198 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSCCBCTTSTTH
T ss_pred cCHHHHhCCCCCCEEEeeCCceeCCcccc
Confidence 55543 4678899999999999998 654
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-23 Score=208.60 Aligned_cols=112 Identities=18% Similarity=0.156 Sum_probs=71.2
Q ss_pred EEEccCCcCCCCCCccccCCCCCCEEEccCCcCccCchhhhhcccCCCCCcccccccccccccc-ccCcEEEccCCcccc
Q 041121 62 SIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLK-NSLESLHLEVNHFTG 140 (574)
Q Consensus 62 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~-~~L~~L~L~~n~l~~ 140 (574)
++.+++|++++.+|..+...++|++|++++|.+++..+..+.. ++..++ + |++|++++|++++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~---------------~l~~~~~~-L~~L~Ls~N~l~~ 65 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQ---------------AFANTPAS-VTSLNLSGNSLGF 65 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH---------------HHHTCCTT-CCEEECCSSCGGG
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHH---------------HHHhCCCc-eeEEECcCCCCCH
Confidence 3566677777666666666666777777777777555533332 455555 5 7777777777776
Q ss_pred cCCC-CCCC-----CCCCEEEccCcccccccchhhhc----c-CCCCEEEccCCCCCccc
Q 041121 141 PIPD-LGGF-----SSMKRLYLSDNLLNGTINKSIGQ----I-FKLEITCLSQNSLTDLA 189 (574)
Q Consensus 141 ~~~~-l~~l-----~~L~~L~L~~n~i~~~~~~~~~~----l-~~L~~L~Ls~N~l~~l~ 189 (574)
..+. +..+ ++|++|++++|++++..+..+.. + ++|++|++++|.++...
T Consensus 66 ~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 125 (362)
T 3goz_A 66 KNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS 125 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred HHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHH
Confidence 5443 4443 77777777777777655554333 3 67777777777766443
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.4e-23 Score=208.52 Aligned_cols=87 Identities=21% Similarity=0.202 Sum_probs=60.9
Q ss_pred cccEEEccCCcCCCC----CcHhhhh-cCCCCEEeCCCCcCcccCC----ccccCCCCCCEEeCCCCccccc-------C
Q 041121 429 LIKSLELSSNKLNGA----VPEEIMD-LVGLVALNLSRNHLTGQNS----PKIGQLKSLDFLDLSRNQLVGG-------I 492 (574)
Q Consensus 429 ~L~~L~Ls~n~l~~~----~~~~~~~-l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~N~i~~~-------~ 492 (574)
+|++|+|++|.+++. ++..+.. .++|++|+|++|.+++..+ ..+..+++|++|++++|.+... .
T Consensus 197 ~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l 276 (362)
T 3goz_A 197 SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKAL 276 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHH
T ss_pred CCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHH
Confidence 467888888887643 3445555 3478888888888876544 3346678888888888874432 3
Q ss_pred CCCccCCCCCCEEeccCCcCccc
Q 041121 493 PSSLSPLSVLSVMDLSYNNLSGK 515 (574)
Q Consensus 493 ~~~l~~l~~L~~L~Ls~N~l~~~ 515 (574)
+..+..+++|+.||+++|++...
T Consensus 277 ~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 277 GAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHhccCCceEEEecCCCcCCCc
Confidence 44677788888899999998754
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.5e-22 Score=194.81 Aligned_cols=223 Identities=23% Similarity=0.254 Sum_probs=140.6
Q ss_pred CCcEEEcCCCcccccccc---cccCCCCccEEECCCCCCCCCCCcch--hcCCCCcEEEccCcccccCCC----cccccc
Q 041121 228 NSSFLNLSKNRFSRSISL---CSISGSKLTYIDLSSNLLSGKLPDCW--WMFDSLVILDLGNNSFSGRIP----DSMGFL 298 (574)
Q Consensus 228 ~L~~L~L~~n~i~~~~~~---~~~~~~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~----~~~~~l 298 (574)
.++.+.+.++.+...... .+...++|++|++++|.+++..|..+ ..+++|++|++++|.+++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 345555555555432111 11133567888888888777777666 777788888888887775444 122345
Q ss_pred cCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCccccc--C--Cccc
Q 041121 299 QNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGK--I--PKCF 374 (574)
Q Consensus 299 ~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~--~--~~~~ 374 (574)
++| +.+++++|.+.+..+..+..+++|++|+|++|++.+. . +..+
T Consensus 145 ~~L-------------------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 193 (310)
T 4glp_A 145 PGL-------------------------------KVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCP 193 (310)
T ss_dssp SCC-------------------------------CEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCT
T ss_pred cCC-------------------------------CEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhh
Confidence 555 6677777777766666777777777777777776431 1 1111
Q ss_pred cccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcH----hhhh
Q 041121 375 NNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPE----EIMD 450 (574)
Q Consensus 375 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~ 450 (574)
. .+++|++|++++|.++ .++. .+..
T Consensus 194 ~--------------------------------------------------~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~ 222 (310)
T 4glp_A 194 H--------------------------------------------------KFPAIQNLALRNTGME-TPTGVCAALAAA 222 (310)
T ss_dssp T--------------------------------------------------SSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred h--------------------------------------------------cCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence 2 3445677777777775 3333 2466
Q ss_pred cCCCCEEeCCCCcCcccCCccccCC---CCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcccCCCcchhcccCc
Q 041121 451 LVGLVALNLSRNHLTGQNSPKIGQL---KSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTGTQLQSFNG 527 (574)
Q Consensus 451 l~~L~~L~Ls~N~l~~~~~~~~~~l---~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~ 527 (574)
+++|++|+|++|++++..|..+..+ ++|++|++++|+++ .+|..+. ++|+.|++++|+|+ .+|....++.++.
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~-~~~~~~~l~~L~~ 298 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLN-RAPQPDELPEVDN 298 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCC-SCCCTTSCCCCSC
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCC-CCchhhhCCCccE
Confidence 6777777777777776666666555 57777777777777 4455443 57777777777777 3344455677777
Q ss_pred ccccCCCCC
Q 041121 528 SVYAGNPEL 536 (574)
Q Consensus 528 ~~l~~Np~~ 536 (574)
+++++||+.
T Consensus 299 L~L~~N~l~ 307 (310)
T 4glp_A 299 LTLDGNPFL 307 (310)
T ss_dssp EECSSTTTS
T ss_pred EECcCCCCC
Confidence 777777654
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-21 Score=191.45 Aligned_cols=226 Identities=19% Similarity=0.177 Sum_probs=178.2
Q ss_pred CCCCcEEEccCCCCCCC--C---C--cCCcccEEEccCCcCCCCCCccc--cCCCCCCEEEccCCcCccCchhhhhcccC
Q 041121 37 LHSLKTLTSHSCYLRPL--S---N--ISSNFVSIDLSFNQLQGSIPDSS--QHMVYLEHLSLMFNELEGGIPKFFGNMLN 107 (574)
Q Consensus 37 l~~L~~L~l~~n~l~~~--~---~--~~~~L~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 107 (574)
...++.+.+.++.++.. . . ..++|++|++++|.+++..|..+ ..+++|++|++++|.+.+..+. +...
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~-~~~~-- 139 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSW-LAEL-- 139 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSS-HHHH--
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhh-hHHH--
Confidence 34578888888877653 1 1 12579999999999998888888 8999999999999999864431 1111
Q ss_pred CCCCccccccccccccccccCcEEEccCCcccccCCC-CCCCCCCCEEEccCcccccc--c--chhhhccCCCCEEEccC
Q 041121 108 LSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNLLNGT--I--NKSIGQIFKLEITCLSQ 182 (574)
Q Consensus 108 L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~L~~n~i~~~--~--~~~~~~l~~L~~L~Ls~ 182 (574)
.+..+++ |++|++++|++.+..+. |.++++|++|++++|++.+. . +..+..+++|++|++++
T Consensus 140 ------------~~~~~~~-L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~ 206 (310)
T 4glp_A 140 ------------QQWLKPG-LKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRN 206 (310)
T ss_dssp ------------HTTBCSC-CCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCS
T ss_pred ------------HhhhccC-CCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCC
Confidence 4456777 99999999999988877 99999999999999998642 2 23357899999999999
Q ss_pred CCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCCC------CCCCcEEEcCCCcccccccccccCCCCccEE
Q 041121 183 NSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPL------PSNSSFLNLSKNRFSRSISLCSISGSKLTYI 256 (574)
Q Consensus 183 N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~------~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L 256 (574)
|.++.++. .+...+..+++|++|++++|++.+..|.. +++|++|+|++|+|+.++... .++|++|
T Consensus 207 N~l~~l~~------~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~---~~~L~~L 277 (310)
T 4glp_A 207 TGMETPTG------VCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL---PAKLRVL 277 (310)
T ss_dssp SCCCCHHH------HHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC---CSCCSCE
T ss_pred CCCCchHH------HHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh---cCCCCEE
Confidence 99875432 11122467889999999999999875533 369999999999999765433 3899999
Q ss_pred ECCCCCCCCCCCcchhcCCCCcEEEccCccccc
Q 041121 257 DLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSG 289 (574)
Q Consensus 257 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 289 (574)
++++|++++. |. +..+++|+.|++++|++++
T Consensus 278 ~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 278 DLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp ECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred ECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 9999999954 33 6788999999999999874
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.86 E-value=3e-23 Score=209.92 Aligned_cols=247 Identities=17% Similarity=0.122 Sum_probs=161.2
Q ss_pred hhhhhhcCCCCCcEEECCCCCCCCC-C-chhhhcCCCCCCcEEEccCCCCCCCC--------------CcCCcccEEEcc
Q 041121 3 KLLMRSLRLHSLRYLNLEENNLANC-S-DWFQVIGKLHSLKTLTSHSCYLRPLS--------------NISSNFVSIDLS 66 (574)
Q Consensus 3 ~l~~~l~~l~~L~~L~Ls~n~i~~~-~-~~~~~~~~l~~L~~L~l~~n~l~~~~--------------~~~~~L~~L~Ls 66 (574)
.+++.+..+++|++|+|++|.++.. + .+...+..+++|++|++++|.+..+. .-.++|++|+|+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 4667888899999999999988876 2 23345788999999999998665431 123677888888
Q ss_pred CCcCCC----CCCccccCCCCCCEEEccCCcCccCchhhhhcccCCCCCccccccccccccc---------cccCcEEEc
Q 041121 67 FNQLQG----SIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCL---------KNSLESLHL 133 (574)
Q Consensus 67 ~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l---------~~~L~~L~L 133 (574)
+|.++. .++..+..+++|++|+|++|.++...+..+.. .+..+ ++ |++|++
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~---------------~l~~l~~~~~~~~~~~-L~~L~L 166 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR---------------ALQELAVNKKAKNAPP-LRSIIC 166 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH---------------HHHHHHHHHHHHTCCC-CCEEEC
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHH---------------HHHHHhhhhhcccCCC-CcEEEC
Confidence 888775 35666777788888888888776444444332 22223 55 777777
Q ss_pred cCCcccc-cCC---C-CCCCCCCCEEEccCccccc-----ccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhc
Q 041121 134 EVNHFTG-PIP---D-LGGFSSMKRLYLSDNLLNG-----TINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSR 203 (574)
Q Consensus 134 ~~n~l~~-~~~---~-l~~l~~L~~L~L~~n~i~~-----~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~ 203 (574)
++|+++. ..+ . +..+++|++|++++|++.. ..+..+..+++|++|+|++|.++.... +.+|.. +.
T Consensus 167 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~----~~l~~~-l~ 241 (386)
T 2ca6_A 167 GRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS----SALAIA-LK 241 (386)
T ss_dssp CSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHH----HHHHHH-GG
T ss_pred CCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHH----HHHHHH-Hc
Confidence 7777752 222 1 4566777777777777762 233366677777777777776642111 112221 22
Q ss_pred CCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCCccccccc----ccc--cCCCCccEEECCCCCCCC----CCCcch-h
Q 041121 204 FGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSIS----LCS--ISGSKLTYIDLSSNLLSG----KLPDCW-W 272 (574)
Q Consensus 204 ~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~----~~~--~~~~~L~~L~L~~n~l~~----~~~~~~-~ 272 (574)
. +++|++|+|++|.|++... ..+ ..+++|++|++++|.+++ .+|..+ .
T Consensus 242 ~---------------------~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~ 300 (386)
T 2ca6_A 242 S---------------------WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDE 300 (386)
T ss_dssp G---------------------CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHH
T ss_pred c---------------------CCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHh
Confidence 2 3456666666666655421 222 237888999999998885 256655 5
Q ss_pred cCCCCcEEEccCcccccCC
Q 041121 273 MFDSLVILDLGNNSFSGRI 291 (574)
Q Consensus 273 ~l~~L~~L~L~~N~l~~~~ 291 (574)
.+++|+.|++++|.+++..
T Consensus 301 ~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 301 KMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HCTTCCEEECTTSBSCTTS
T ss_pred cCCCceEEEccCCcCCcch
Confidence 5789999999999888655
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.3e-23 Score=210.74 Aligned_cols=253 Identities=19% Similarity=0.177 Sum_probs=163.9
Q ss_pred CCCCCCCCEEEccCcccccccc----hhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccC
Q 041121 145 LGGFSSMKRLYLSDNLLNGTIN----KSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEG 220 (574)
Q Consensus 145 l~~l~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~ 220 (574)
+..+++|++|++++|.+....+ ..|..+++|++|++++|.+..+. +.+|.. +
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~-----~~~~~~-~------------------ 83 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVK-----DEIPEA-L------------------ 83 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCG-----GGSHHH-H------------------
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccc-----cchhHH-H------------------
Confidence 5566677777777777765433 33556677777777766554322 112211 0
Q ss_pred CCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCC----CCCcchhcCCCCcEEEccCcccccCCCcccc
Q 041121 221 PIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSG----KLPDCWWMFDSLVILDLGNNSFSGRIPDSMG 296 (574)
Q Consensus 221 ~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 296 (574)
. .....+..+++|++|++++|.++. .++..+..+++|++|++++|.+++..+..+.
T Consensus 84 -------------------~-~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~ 143 (386)
T 2ca6_A 84 -------------------R-LLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA 143 (386)
T ss_dssp -------------------H-HHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHH
T ss_pred -------------------H-HHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHH
Confidence 0 000123456777777777777765 2455667777888888888877643333222
Q ss_pred c----c---------cCccccccccccccCccceeeeccccccccccccceEEecCceec-cCCC---hhhcCCCCCCEE
Q 041121 297 F----L---------QNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFH-GKTP---FQLCQFAFLQVL 359 (574)
Q Consensus 297 ~----l---------~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~-~~~~---~~~~~~~~L~~L 359 (574)
. + ++| +.+++++|++. ...+ ..+..+++|++|
T Consensus 144 ~~l~~l~~~~~~~~~~~L-------------------------------~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 192 (386)
T 2ca6_A 144 RALQELAVNKKAKNAPPL-------------------------------RSIICGRNRLENGSMKEWAKTFQSHRLLHTV 192 (386)
T ss_dssp HHHHHHHHHHHHHTCCCC-------------------------------CEEECCSSCCTGGGHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHhhhhhcccCCCC-------------------------------cEEECCCCCCCcHHHHHHHHHHHhCCCcCEE
Confidence 2 2 444 66667766665 2233 355667788888
Q ss_pred EccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCc
Q 041121 360 DLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNK 439 (574)
Q Consensus 360 ~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~ 439 (574)
++++|+++......+ .+..+..+++|+.|+|++|.
T Consensus 193 ~L~~n~l~~~g~~~l---------------------------------------------~~~~l~~~~~L~~L~Ls~n~ 227 (386)
T 2ca6_A 193 KMVQNGIRPEGIEHL---------------------------------------------LLEGLAYCQELKVLDLQDNT 227 (386)
T ss_dssp ECCSSCCCHHHHHHH---------------------------------------------HHTTGGGCTTCCEEECCSSC
T ss_pred ECcCCCCCHhHHHHH---------------------------------------------HHHHhhcCCCccEEECcCCC
Confidence 888887762110000 00012345667999999999
Q ss_pred CC----CCCcHhhhhcCCCCEEeCCCCcCccc----CCcccc--CCCCCCEEeCCCCcccc----cCCCCc-cCCCCCCE
Q 041121 440 LN----GAVPEEIMDLVGLVALNLSRNHLTGQ----NSPKIG--QLKSLDFLDLSRNQLVG----GIPSSL-SPLSVLSV 504 (574)
Q Consensus 440 l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~--~l~~L~~L~L~~N~i~~----~~~~~l-~~l~~L~~ 504 (574)
++ ..+|..+..+++|++|+|++|.+++. ++..+. .+++|++|+|++|.++. .+|..+ ..+++|+.
T Consensus 228 l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~ 307 (386)
T 2ca6_A 228 FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 307 (386)
T ss_dssp CHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCE
T ss_pred CCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceE
Confidence 85 46778889999999999999999865 455663 38999999999999997 366666 66899999
Q ss_pred EeccCCcCcccCC
Q 041121 505 MDLSYNNLSGKIP 517 (574)
Q Consensus 505 L~Ls~N~l~~~~p 517 (574)
|++++|++++..|
T Consensus 308 L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 308 LELNGNRFSEEDD 320 (386)
T ss_dssp EECTTSBSCTTSH
T ss_pred EEccCCcCCcchh
Confidence 9999999996554
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.86 E-value=9.5e-21 Score=188.58 Aligned_cols=212 Identities=15% Similarity=0.159 Sum_probs=157.1
Q ss_pred cEEEccCCCCCCCC-CcCCcccEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccCchhhhhcccCCCCCcccccccc
Q 041121 41 KTLTSHSCYLRPLS-NISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNM 119 (574)
Q Consensus 41 ~~L~l~~n~l~~~~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~ 119 (574)
++++.++++++.++ ++.+++++|+|++|+|+.+.+.+|.++++|++|+|++|++.+.+|..
T Consensus 12 ~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~------------------ 73 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD------------------ 73 (350)
T ss_dssp TEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTT------------------
T ss_pred CEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChh------------------
Confidence 56777777787773 45678888888888888767778899999999999999886555432
Q ss_pred ccccccccCcE-EEccCCcccccCCC-CCCCCCCCEEEccCcccccccchhhhccCCCCEEEccC-CCCCcccCcccccc
Q 041121 120 SSGCLKNSLES-LHLEVNHFTGPIPD-LGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQ-NSLTDLANIQIKGK 196 (574)
Q Consensus 120 ~~~~l~~~L~~-L~L~~n~l~~~~~~-l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~~ 196 (574)
+|.++++ +++ +.+..|+++.+.+. |.++++|++|++++|++....+..+....++..|++.+ +.+..++...|.+
T Consensus 74 ~f~~L~~-l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~- 151 (350)
T 4ay9_X 74 VFSNLPK-LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG- 151 (350)
T ss_dssp SBCSCTT-CCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTT-
T ss_pred Hhhcchh-hhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhh-
Confidence 6666776 554 56677888887777 88889999999999988877666777777788888855 4566554433321
Q ss_pred CCchhhcCCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECC-CCCCCCCCCcchhcCC
Q 041121 197 LPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLS-SNLLSGKLPDCWWMFD 275 (574)
Q Consensus 197 lp~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~-~n~l~~~~~~~~~~l~ 275 (574)
....++.|+|++|+|+.+....| ...++++|+++ +|.++.+.+++|.+++
T Consensus 152 ----------------------------~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~ 202 (350)
T 4ay9_X 152 ----------------------------LSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGAS 202 (350)
T ss_dssp ----------------------------SBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEE
T ss_pred ----------------------------cchhhhhhccccccccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCc
Confidence 12356778888888887777665 44678899987 4778766667889999
Q ss_pred CCcEEEccCcccccCCCcccccccCc
Q 041121 276 SLVILDLGNNSFSGRIPDSMGFLQNI 301 (574)
Q Consensus 276 ~L~~L~L~~N~l~~~~~~~~~~l~~L 301 (574)
+|++||+++|+++...+..+..+++|
T Consensus 203 ~L~~LdLs~N~l~~lp~~~~~~L~~L 228 (350)
T 4ay9_X 203 GPVILDISRTRIHSLPSYGLENLKKL 228 (350)
T ss_dssp CCSEEECTTSCCCCCCSSSCTTCCEE
T ss_pred ccchhhcCCCCcCccChhhhccchHh
Confidence 99999999999986655566655554
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=1e-20 Score=184.72 Aligned_cols=194 Identities=21% Similarity=0.279 Sum_probs=128.2
Q ss_pred CCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCccccc
Q 041121 226 PSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQF 305 (574)
Q Consensus 226 ~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~ 305 (574)
+++|++|++++|.+..+. .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++. ..+..+++|
T Consensus 40 l~~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L---- 109 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSI---- 109 (308)
T ss_dssp HHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTC----
T ss_pred cCCcCEEEeeCCCccCch--hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCC----
Confidence 345555666666555443 34456677777777776664333 66667777777777766642 245555555
Q ss_pred cccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccC
Q 041121 306 TQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERS 385 (574)
Q Consensus 306 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l 385 (574)
+.+++++|.+.+.. .+..+++|++|++++|.+++..+ +.
T Consensus 110 ---------------------------~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~---------- 148 (308)
T 1h6u_A 110 ---------------------------KTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LA---------- 148 (308)
T ss_dssp ---------------------------CEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GG----------
T ss_pred ---------------------------CEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--cc----------
Confidence 66666666666432 26667777777777777663322 22
Q ss_pred CCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCc
Q 041121 386 SDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLT 465 (574)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 465 (574)
.+++|+.|++++|.+++ ++. +..+++|++|++++|+++
T Consensus 149 ----------------------------------------~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 149 ----------------------------------------GLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp ----------------------------------------GCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC
T ss_pred ----------------------------------------CCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccC
Confidence 34556888888888874 333 778888888888888887
Q ss_pred ccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcccCC
Q 041121 466 GQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIP 517 (574)
Q Consensus 466 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p 517 (574)
+..+ +..+++|++|++++|++++..+ +..+++|+.|++++|+++ ..|
T Consensus 187 ~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~-~~~ 233 (308)
T 1h6u_A 187 DISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT-NQP 233 (308)
T ss_dssp CCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE-CCC
T ss_pred cChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee-cCC
Confidence 5443 7778888888888888886553 778888888888888887 444
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.84 E-value=4.5e-22 Score=197.40 Aligned_cols=208 Identities=18% Similarity=0.188 Sum_probs=124.5
Q ss_pred CCCcEEEcCCCccccc-ccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCc-ccccC-CCcccccccCccc
Q 041121 227 SNSSFLNLSKNRFSRS-ISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNN-SFSGR-IPDSMGFLQNIQT 303 (574)
Q Consensus 227 ~~L~~L~L~~n~i~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~ 303 (574)
++|++|++++|.+.+. .+..+..+++|++|++++|.+++..+..+..+++|++|++++| .+++. .+..+..+++|
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L-- 170 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL-- 170 (336)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC--
T ss_pred CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCC--
Confidence 4455555555554432 2333445566666666666665445555566666666666666 34431 23334444444
Q ss_pred cccccccccCccceeeeccccccccccccceEEecCc-eeccC-CChhhcCCC-CCCEEEccCCc--cc-ccCCcccccc
Q 041121 304 QFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSN-KFHGK-TPFQLCQFA-FLQVLDLSLNN--IS-GKIPKCFNNF 377 (574)
Q Consensus 304 l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n-~~~~~-~~~~~~~~~-~L~~L~L~~n~--l~-~~~~~~~~~l 377 (574)
+.+++++| .+++. .+..+..++ +|++|++++|. ++ +.++..
T Consensus 171 -----------------------------~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~---- 217 (336)
T 2ast_B 171 -----------------------------DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL---- 217 (336)
T ss_dssp -----------------------------CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH----
T ss_pred -----------------------------CEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHH----
Confidence 45555555 44432 334455666 77777777763 32 111111
Q ss_pred ccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCc-CCCCCcHhhhhcCCCCE
Q 041121 378 TAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNK-LNGAVPEEIMDLVGLVA 456 (574)
Q Consensus 378 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~ 456 (574)
+..+++|+.|++++|. +++..+..+..+++|++
T Consensus 218 ----------------------------------------------~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~ 251 (336)
T 2ast_B 218 ----------------------------------------------VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH 251 (336)
T ss_dssp ----------------------------------------------HHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred ----------------------------------------------HhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCE
Confidence 2345567888888888 66666778888888899
Q ss_pred EeCCCCc-CcccCCccccCCCCCCEEeCCCCcccccCCCCccCCC-CCCEEeccCCcCcccCCCc
Q 041121 457 LNLSRNH-LTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLS-VLSVMDLSYNNLSGKIPTG 519 (574)
Q Consensus 457 L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~-~L~~L~Ls~N~l~~~~p~~ 519 (574)
|++++|. +.......+.++++|++|++++| +. .+.+..+. .+..|++++|++++..|..
T Consensus 252 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 252 LSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp EECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred eeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCcceEEecccCccccCCc
Confidence 9998885 33222235778888999999888 33 33444443 4777778889988777764
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=3.4e-20 Score=180.98 Aligned_cols=195 Identities=21% Similarity=0.217 Sum_probs=159.0
Q ss_pred ccccccccCcEEEccCCcccccCCCCCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCccccccCCc
Q 041121 120 SSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPD 199 (574)
Q Consensus 120 ~~~~l~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~ 199 (574)
.+..+++ |++|++++|.+... +.+..+++|++|++++|.+.+..+ +..+++|++|++++|.++.++.
T Consensus 36 ~~~~l~~-L~~L~l~~~~i~~l-~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~--------- 102 (308)
T 1h6u_A 36 TQADLDG-ITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVSA--------- 102 (308)
T ss_dssp CHHHHHT-CCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCGG---------
T ss_pred cHHHcCC-cCEEEeeCCCccCc-hhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCchh---------
Confidence 4556787 99999999999864 468889999999999999986554 8999999999999999886531
Q ss_pred hhhcCCCCCCeEeccCCcccCCCC-CCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCc
Q 041121 200 LSSRFGTSNPGIDISSNHFEGPIP-PLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLV 278 (574)
Q Consensus 200 ~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 278 (574)
+..+++|+.|++++|.+++..+ ..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|+
T Consensus 103 --~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~ 176 (308)
T 1h6u_A 103 --IAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLT 176 (308)
T ss_dssp --GTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCC
T ss_pred --hcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCC
Confidence 5678899999999999887543 227889999999999887765 6678899999999999885433 88889999
Q ss_pred EEEccCcccccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCE
Q 041121 279 ILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQV 358 (574)
Q Consensus 279 ~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~ 358 (574)
.|++++|.+++..+ +..+++| +.+++++|++.+.. .+..+++|+.
T Consensus 177 ~L~l~~n~l~~~~~--l~~l~~L-------------------------------~~L~L~~N~l~~~~--~l~~l~~L~~ 221 (308)
T 1h6u_A 177 TLKADDNKISDISP--LASLPNL-------------------------------IEVHLKNNQISDVS--PLANTSNLFI 221 (308)
T ss_dssp EEECCSSCCCCCGG--GGGCTTC-------------------------------CEEECTTSCCCBCG--GGTTCTTCCE
T ss_pred EEECCCCccCcChh--hcCCCCC-------------------------------CEEEccCCccCccc--cccCCCCCCE
Confidence 99999999885443 6777777 88899999888655 3788889999
Q ss_pred EEccCCcccc
Q 041121 359 LDLSLNNISG 368 (574)
Q Consensus 359 L~L~~n~l~~ 368 (574)
|++++|++++
T Consensus 222 L~l~~N~i~~ 231 (308)
T 1h6u_A 222 VTLTNQTITN 231 (308)
T ss_dssp EEEEEEEEEC
T ss_pred EEccCCeeec
Confidence 9999998874
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-21 Score=193.10 Aligned_cols=151 Identities=21% Similarity=0.198 Sum_probs=100.9
Q ss_pred CCCEEEccCCcCccCchhhhhcccCCCCCccccccccccccc--cccCcEEEccCCcccccCCCCCCCCCCCEEEccCcc
Q 041121 83 YLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCL--KNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNL 160 (574)
Q Consensus 83 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l--~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~L~~n~ 160 (574)
.+++++++++.+. +. .+..+ +. ++.|++++|.+.+..+.+..+++|++|++++|.
T Consensus 48 ~~~~l~l~~~~~~---~~-------------------~~~~~~~~~-l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~ 104 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PD-------------------VTGRLLSQG-VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSV 104 (336)
T ss_dssp TSSEEECTTCBCC---HH-------------------HHHHHHHTT-CSEEECTTCEECSCCCSCCCCBCCCEEECTTCE
T ss_pred hheeeccccccCC---HH-------------------HHHhhhhcc-ceEEEcCCccccccchhhccCCCCCEEEccCCC
Confidence 4788888888765 33 23333 55 999999999999877777789999999999999
Q ss_pred cccc-cchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCC-c
Q 041121 161 LNGT-INKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKN-R 238 (574)
Q Consensus 161 i~~~-~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n-~ 238 (574)
+.+. .+..+..+++|++|++++|.++.. .+.. +..+ ++|++|++++| .
T Consensus 105 l~~~~~~~~~~~~~~L~~L~L~~~~l~~~--------~~~~-l~~~---------------------~~L~~L~L~~~~~ 154 (336)
T 2ast_B 105 IEVSTLHGILSQCSKLQNLSLEGLRLSDP--------IVNT-LAKN---------------------SNLVRLNLSGCSG 154 (336)
T ss_dssp ECHHHHHHHHTTBCCCSEEECTTCBCCHH--------HHHH-HTTC---------------------TTCSEEECTTCBS
T ss_pred cCHHHHHHHHhhCCCCCEEeCcCcccCHH--------HHHH-HhcC---------------------CCCCEEECCCCCC
Confidence 8865 778888999999999999876531 1111 2223 34444444444 3
Q ss_pred cccc-ccccccCCCCccEEECCCC-CCCCC-CCcchhcCC-CCcEEEccCcc
Q 041121 239 FSRS-ISLCSISGSKLTYIDLSSN-LLSGK-LPDCWWMFD-SLVILDLGNNS 286 (574)
Q Consensus 239 i~~~-~~~~~~~~~~L~~L~L~~n-~l~~~-~~~~~~~l~-~L~~L~L~~N~ 286 (574)
+++. .+..+..+++|++|++++| .+++. .+..+..++ +|++|++++|.
T Consensus 155 l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~ 206 (336)
T 2ast_B 155 FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 206 (336)
T ss_dssp CCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred CCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCc
Confidence 3321 2222345677777777777 66532 345566667 77777777763
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.82 E-value=3.9e-20 Score=171.04 Aligned_cols=156 Identities=22% Similarity=0.295 Sum_probs=119.8
Q ss_pred ceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcc
Q 041121 333 RFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKV 412 (574)
Q Consensus 333 ~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (574)
+.++++++.+..+ |..+. +++++|++++|.+++..+..|..+++
T Consensus 14 ~~v~c~~~~l~~i-P~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~--------------------------------- 57 (220)
T 2v9t_B 14 NIVDCRGKGLTEI-PTNLP--ETITEIRLEQNTIKVIPPGAFSPYKK--------------------------------- 57 (220)
T ss_dssp TEEECTTSCCSSC-CSSCC--TTCCEEECCSSCCCEECTTSSTTCTT---------------------------------
T ss_pred CEEEcCCCCcCcC-CCccC--cCCCEEECCCCcCCCcCHhHhhCCCC---------------------------------
Confidence 6678888887754 33332 67889999998888666555554444
Q ss_pred cccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccC
Q 041121 413 MPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGI 492 (574)
Q Consensus 413 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~ 492 (574)
|+.|+|++|.+++..|..|.++++|++|+|++|+|+.+.+..|.++++|++|+|++|+|++..
T Consensus 58 -----------------L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~ 120 (220)
T 2v9t_B 58 -----------------LRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLR 120 (220)
T ss_dssp -----------------CCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred -----------------CCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeC
Confidence 578888888888777788888888888888888888777777788888888888888888877
Q ss_pred CCCccCCCCCCEEeccCCcCcccCCCc-chhcccCcccccCCCCCCCCCC
Q 041121 493 PSSLSPLSVLSVMDLSYNNLSGKIPTG-TQLQSFNGSVYAGNPELCGLPL 541 (574)
Q Consensus 493 ~~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~l~~~~l~~Np~~c~~~l 541 (574)
+..|..+++|+.|+|++|+|++..+.. ..+..++.+++++|||.|+|++
T Consensus 121 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l 170 (220)
T 2v9t_B 121 VDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL 170 (220)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred HHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence 888888888888888888888544443 3467778888888888888875
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.8e-20 Score=187.39 Aligned_cols=111 Identities=32% Similarity=0.357 Sum_probs=76.1
Q ss_pred ccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCc---cCCCCCCEEe
Q 041121 430 IKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSL---SPLSVLSVMD 506 (574)
Q Consensus 430 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l---~~l~~L~~L~ 506 (574)
|++|+|++|.|+...+..|.++++|++|+|++|+|++..+..|.++++|+.|+|++|+|+...+..| ..+++|+.|+
T Consensus 90 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~ 169 (361)
T 2xot_A 90 LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLD 169 (361)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEE
T ss_pred CCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEE
Confidence 4677777777775556667777777777777777777777777777777777777777776555555 4577788888
Q ss_pred ccCCcCcccCCCc--chhcc--cCcccccCCCCCCCCCC
Q 041121 507 LSYNNLSGKIPTG--TQLQS--FNGSVYAGNPELCGLPL 541 (574)
Q Consensus 507 Ls~N~l~~~~p~~--~~~~~--l~~~~l~~Np~~c~~~l 541 (574)
|++|+|+ .+|.. ..++. +..+++++|||.|+|.+
T Consensus 170 L~~N~l~-~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l 207 (361)
T 2xot_A 170 LSSNKLK-KLPLTDLQKLPAWVKNGLYLHNNPLECDCKL 207 (361)
T ss_dssp CCSSCCC-CCCHHHHHHSCHHHHTTEECCSSCEECCHHH
T ss_pred CCCCCCC-ccCHHHhhhccHhhcceEEecCCCccCCcCc
Confidence 8888877 45532 12222 35677888888888764
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-19 Score=167.19 Aligned_cols=153 Identities=20% Similarity=0.214 Sum_probs=84.3
Q ss_pred ceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCC-ccccccccCccccCCCCccccccccccCCCccccccccCc
Q 041121 333 RFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIP-KCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDK 411 (574)
Q Consensus 333 ~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (574)
+.+++++|.++. +|..+ .+.+++|+|++|.+++..+ ..|..+++|+.+++++|.+..+
T Consensus 14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i------------------ 72 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI------------------ 72 (220)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEE------------------
T ss_pred CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEE------------------
Confidence 678888888875 34433 3457899999999886644 3466666665555444443311
Q ss_pred ccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCccccc
Q 041121 412 VMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGG 491 (574)
Q Consensus 412 ~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~ 491 (574)
.+..+..+++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..|.++++|++|+|++|++++.
T Consensus 73 --------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 144 (220)
T 2v70_A 73 --------EEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTV 144 (220)
T ss_dssp --------CTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCB
T ss_pred --------CHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEE
Confidence 111223344455555555555544444455555555555555555554455555555555555555555544
Q ss_pred CCCCccCCCCCCEEeccCCcCcc
Q 041121 492 IPSSLSPLSVLSVMDLSYNNLSG 514 (574)
Q Consensus 492 ~~~~l~~l~~L~~L~Ls~N~l~~ 514 (574)
.|..|..+++|+.|++++|++++
T Consensus 145 ~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 145 APGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CTTTTTTCTTCCEEECCSCCEEC
T ss_pred CHHHhcCCCCCCEEEecCcCCcC
Confidence 45555555555555555555543
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-19 Score=166.21 Aligned_cols=155 Identities=23% Similarity=0.227 Sum_probs=132.9
Q ss_pred ccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCC-cccccccCccccccccccccCccceeeeccccccccccc
Q 041121 253 LTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIP-DSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWE 331 (574)
Q Consensus 253 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~ 331 (574)
-+.+++++|.++. +|..+ .+.++.|++++|.+++..+ ..|..+++|
T Consensus 13 ~~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L------------------------------ 59 (220)
T 2v70_A 13 GTTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQL------------------------------ 59 (220)
T ss_dssp TTEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTC------------------------------
T ss_pred CCEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCC------------------------------
Confidence 3589999999984 56544 3467999999999997754 457888888
Q ss_pred cceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCc
Q 041121 332 ERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDK 411 (574)
Q Consensus 332 ~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (574)
+.+++++|.+++..+..|..+++|++|+|++|.+++..+..|.+
T Consensus 60 -~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~----------------------------------- 103 (220)
T 2v70_A 60 -RKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKG----------------------------------- 103 (220)
T ss_dssp -CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTT-----------------------------------
T ss_pred -CEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcC-----------------------------------
Confidence 88999999999888888999999999999999998666655544
Q ss_pred ccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCccccc
Q 041121 412 VMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGG 491 (574)
Q Consensus 412 ~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~ 491 (574)
+++|++|+|++|.+++..|..|.++++|++|+|++|++++..|..|..+++|++|++++|++.+.
T Consensus 104 ---------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 104 ---------------LESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp ---------------CSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred ---------------CcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 44469999999999988899999999999999999999999899999999999999999999854
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.4e-19 Score=164.47 Aligned_cols=182 Identities=17% Similarity=0.180 Sum_probs=144.3
Q ss_pred CCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCccc
Q 041121 208 NPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSF 287 (574)
Q Consensus 208 L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 287 (574)
.+.++++++.++......++++++|++++|.++++.+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+
T Consensus 9 ~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 9 GTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp TTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 45677777777766655677899999999999888887788889999999999999877777788999999999999999
Q ss_pred ccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCccc
Q 041121 288 SGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNIS 367 (574)
Q Consensus 288 ~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~ 367 (574)
++..+..+..+++| +.+++++|.+.+..+..+..+++|++|++++|+++
T Consensus 89 ~~~~~~~~~~l~~L-------------------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 137 (208)
T 2o6s_A 89 QSLPNGVFDKLTQL-------------------------------KELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK 137 (208)
T ss_dssp CCCCTTTTTTCTTC-------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CccCHhHhcCccCC-------------------------------CEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc
Confidence 87777777888888 88999999998877777888999999999999988
Q ss_pred ccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHh
Q 041121 368 GKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEE 447 (574)
Q Consensus 368 ~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 447 (574)
+..+..|..+++ |+.|++++|.+.+
T Consensus 138 ~~~~~~~~~l~~--------------------------------------------------L~~L~l~~N~~~~----- 162 (208)
T 2o6s_A 138 SVPDGVFDRLTS--------------------------------------------------LQYIWLHDNPWDC----- 162 (208)
T ss_dssp CCCTTTTTTCTT--------------------------------------------------CCEEECCSCCBCC-----
T ss_pred eeCHHHhccCCC--------------------------------------------------ccEEEecCCCeec-----
Confidence 655555544444 5777788777653
Q ss_pred hhhcCCCCEEeCCCCcCcccCCccccCCCC
Q 041121 448 IMDLVGLVALNLSRNHLTGQNSPKIGQLKS 477 (574)
Q Consensus 448 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 477 (574)
.+++|++|+++.|++++.+|..++.++.
T Consensus 163 --~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 163 --TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp --CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred --CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 3456777778888888777777766654
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.8e-19 Score=188.59 Aligned_cols=34 Identities=41% Similarity=0.575 Sum_probs=14.8
Q ss_pred CCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccc
Q 041121 251 SKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFS 288 (574)
Q Consensus 251 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 288 (574)
++|++|++++|.|++ +|. +.. +|+.|++++|.++
T Consensus 100 ~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~ 133 (571)
T 3cvr_A 100 ASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLT 133 (571)
T ss_dssp TTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCS
T ss_pred CCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCC
Confidence 444444444444443 222 222 4444444444444
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.5e-19 Score=165.56 Aligned_cols=132 Identities=27% Similarity=0.338 Sum_probs=103.4
Q ss_pred ceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcc
Q 041121 333 RFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKV 412 (574)
Q Consensus 333 ~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (574)
+.+++++|.+.+..+..|..+++|++|+|++|++++..|..|.++++
T Consensus 35 ~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~--------------------------------- 81 (220)
T 2v9t_B 35 TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS--------------------------------- 81 (220)
T ss_dssp CEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSS---------------------------------
T ss_pred CEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcC---------------------------------
Confidence 44555555555455556667778888888888887666666654444
Q ss_pred cccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccC
Q 041121 413 MPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGI 492 (574)
Q Consensus 413 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~ 492 (574)
|++|+|++|.|+...+..|.++++|++|+|++|++++..+..|.++++|++|+|++|++++..
T Consensus 82 -----------------L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 144 (220)
T 2v9t_B 82 -----------------LNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA 144 (220)
T ss_dssp -----------------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred -----------------CCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC
Confidence 588888888888666667788889999999999988888888888899999999999998888
Q ss_pred CCCccCCCCCCEEeccCCcCcc
Q 041121 493 PSSLSPLSVLSVMDLSYNNLSG 514 (574)
Q Consensus 493 ~~~l~~l~~L~~L~Ls~N~l~~ 514 (574)
+..|..+++|+.|++++|++.+
T Consensus 145 ~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 145 KGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp TTTTTTCTTCCEEECCSSCEEC
T ss_pred HHHHhCCCCCCEEEeCCCCcCC
Confidence 7888888999999999999874
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.8e-19 Score=163.22 Aligned_cols=130 Identities=22% Similarity=0.234 Sum_probs=98.1
Q ss_pred ceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcc
Q 041121 333 RFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKV 412 (574)
Q Consensus 333 ~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (574)
+.+++++|++.+..+..|..+++|++|++++|++++..+..|..
T Consensus 55 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------------------------------------ 98 (208)
T 2o6s_A 55 TQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDK------------------------------------ 98 (208)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT------------------------------------
T ss_pred cEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcC------------------------------------
Confidence 44444444444444445667778888888888887554444443
Q ss_pred cccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccC
Q 041121 413 MPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGI 492 (574)
Q Consensus 413 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~ 492 (574)
+++|++|++++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|.+.+
T Consensus 99 --------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-- 162 (208)
T 2o6s_A 99 --------------LTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-- 162 (208)
T ss_dssp --------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC--
T ss_pred --------------ccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec--
Confidence 3445888888888887767778888999999999999987777778889999999999997763
Q ss_pred CCCccCCCCCCEEeccCCcCcccCCCc
Q 041121 493 PSSLSPLSVLSVMDLSYNNLSGKIPTG 519 (574)
Q Consensus 493 ~~~l~~l~~L~~L~Ls~N~l~~~~p~~ 519 (574)
.++.|+.|+++.|+++|.+|..
T Consensus 163 -----~~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 163 -----TCPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp -----CTTTTHHHHHHHHHCTTTBBCT
T ss_pred -----CCCCHHHHHHHHHhCCceeecc
Confidence 4567889999999999999864
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-18 Score=161.23 Aligned_cols=154 Identities=27% Similarity=0.303 Sum_probs=86.6
Q ss_pred ceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcc
Q 041121 333 RFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKV 412 (574)
Q Consensus 333 ~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (574)
+.++.+++.+..+ |..+ .++|++|+|++|.+++..+..|.++++|
T Consensus 22 ~~v~c~~~~l~~i-p~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L-------------------------------- 66 (229)
T 3e6j_A 22 TTVDCRSKRHASV-PAGI--PTNAQILYLHDNQITKLEPGVFDSLINL-------------------------------- 66 (229)
T ss_dssp TEEECTTSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTC--------------------------------
T ss_pred CEeEccCCCcCcc-CCCC--CCCCCEEEcCCCccCccCHHHhhCccCC--------------------------------
Confidence 6788888887754 3333 3789999999999987777777766665
Q ss_pred cccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccC
Q 041121 413 MPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGI 492 (574)
Q Consensus 413 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~ 492 (574)
++|+|++|.++...+..|..+++|++|+|++|+|++..+..|..+++|++|++++|+++ .+
T Consensus 67 ------------------~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~l 127 (229)
T 3e6j_A 67 ------------------KELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-EL 127 (229)
T ss_dssp ------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SC
T ss_pred ------------------cEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-cc
Confidence 45555555554333344455555555555555555444444455555555555555555 33
Q ss_pred CCCccCCCCCCEEeccCCcCcccCCCc-chhcccCcccccCCCCCCCCC
Q 041121 493 PSSLSPLSVLSVMDLSYNNLSGKIPTG-TQLQSFNGSVYAGNPELCGLP 540 (574)
Q Consensus 493 ~~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~l~~~~l~~Np~~c~~~ 540 (574)
|..+..+++|+.|++++|+|++..+.. ..+..++.+++.+|||.|+|+
T Consensus 128 p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 128 PRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 444455555555555555555222221 234444555555555555543
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.3e-18 Score=166.43 Aligned_cols=147 Identities=23% Similarity=0.266 Sum_probs=74.6
Q ss_pred CCCCCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCCCCc--CCcccEEEccCCcCCCCCCccccCCCCCCEE
Q 041121 10 RLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNI--SSNFVSIDLSFNQLQGSIPDSSQHMVYLEHL 87 (574)
Q Consensus 10 ~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 87 (574)
.+++|++|++++|.++.++ .+..+++|++|++++|+++++..+ .++|++|++++|.++. + ..+..+++|++|
T Consensus 44 ~l~~L~~L~l~~~~i~~~~----~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQ----GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCCCCT----TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEE
T ss_pred hcCcccEEEccCCCcccCh----hHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCC-C-hhhccCCCCCEE
Confidence 4455566666666555553 245555566666555555554222 2455555555555543 1 125555555555
Q ss_pred EccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccccCCCCCCCCCCCEEEccCcccccccch
Q 041121 88 SLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINK 167 (574)
Q Consensus 88 ~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~L~~n~i~~~~~~ 167 (574)
++++|++++. + .+..+++ |+.|++++|++++. +.+..+++|++|++++|++++..+
T Consensus 118 ~L~~n~i~~~-~--------------------~l~~l~~-L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~- 173 (291)
T 1h6t_A 118 SLEHNGISDI-N--------------------GLVHLPQ-LESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP- 173 (291)
T ss_dssp ECTTSCCCCC-G--------------------GGGGCTT-CCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-
T ss_pred ECCCCcCCCC-h--------------------hhcCCCC-CCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-
Confidence 5555555421 1 2334444 55555555555543 235555555555555555554333
Q ss_pred hhhccCCCCEEEccCCCCCc
Q 041121 168 SIGQIFKLEITCLSQNSLTD 187 (574)
Q Consensus 168 ~~~~l~~L~~L~Ls~N~l~~ 187 (574)
+..+++|++|++++|.++.
T Consensus 174 -l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 174 -LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp -GTTCTTCCEEECCSSCCCB
T ss_pred -hcCCCccCEEECCCCcCCC
Confidence 5555555555555555543
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.8e-18 Score=177.19 Aligned_cols=183 Identities=23% Similarity=0.310 Sum_probs=135.3
Q ss_pred CCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCccccccc
Q 041121 228 NSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQ 307 (574)
Q Consensus 228 ~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~ 307 (574)
+++.|+|++|.+++++... .++|++|++++|.|+ .+| ..+++|+.|++++|.+++ +|. +.. +|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l---~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L------ 122 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL---PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SL------ 122 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC---CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TC------
T ss_pred CccEEEeCCCCCCccCHhH---cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CC------
Confidence 5566666666666544322 267888888888888 455 456889999999999986 555 543 56
Q ss_pred cccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCC
Q 041121 308 QQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSD 387 (574)
Q Consensus 308 ~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~ 387 (574)
+.+++++|.+++ +|. .+++|+.|++++|.+++ +|. .
T Consensus 123 -------------------------~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~----------- 158 (571)
T 3cvr_A 123 -------------------------KHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---L----------- 158 (571)
T ss_dssp -------------------------CEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---C-----------
T ss_pred -------------------------CEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---c-----------
Confidence 888889988887 443 57888999999888874 443 1
Q ss_pred CccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCccc
Q 041121 388 PTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQ 467 (574)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 467 (574)
+++|+.|+|++|.+++ +|. |. ++|++|+|++|+|+ .
T Consensus 159 ---------------------------------------l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~ 194 (571)
T 3cvr_A 159 ---------------------------------------PTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-S 194 (571)
T ss_dssp ---------------------------------------CTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-S
T ss_pred ---------------------------------------CCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-c
Confidence 2346889999999985 555 55 88999999999998 4
Q ss_pred CCccccCCCCC-------CEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcccCCCc
Q 041121 468 NSPKIGQLKSL-------DFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTG 519 (574)
Q Consensus 468 ~~~~~~~l~~L-------~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~ 519 (574)
+|. |.. +| +.|+|++|+|+ .+|..+..+++|+.|+|++|+|++.+|..
T Consensus 195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 195 LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRES 249 (571)
T ss_dssp CCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHH
T ss_pred hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHH
Confidence 454 544 67 99999999998 46676777999999999999998877765
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.8e-18 Score=169.69 Aligned_cols=179 Identities=26% Similarity=0.186 Sum_probs=132.8
Q ss_pred CeEeccCCcccCCCCCCCCCCcEEEcCCCccccccccccc-CCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCccc
Q 041121 209 PGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSI-SGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSF 287 (574)
Q Consensus 209 ~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 287 (574)
+.++++++.++..+...+..++.|+|++|.|+++.+..+. .+++|++|++++|.|++..+..|..+++|++|+|++|.+
T Consensus 21 ~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 100 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100 (361)
T ss_dssp TEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcC
Confidence 5677777777765545567788888888888888887776 788899999999988877777888888999999999888
Q ss_pred ccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCccc
Q 041121 288 SGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNIS 367 (574)
Q Consensus 288 ~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~ 367 (574)
++..+..|..+++| +.|+|++|.+....+..|..+++|++|+|++|+++
T Consensus 101 ~~~~~~~~~~l~~L-------------------------------~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~ 149 (361)
T 2xot_A 101 HTLDEFLFSDLQAL-------------------------------EVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149 (361)
T ss_dssp CEECTTTTTTCTTC-------------------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CcCCHHHhCCCcCC-------------------------------CEEECCCCcccEECHHHhCCcccCCEEECCCCcCC
Confidence 87777777777777 77888888887777777777888888888888777
Q ss_pred ccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHh
Q 041121 368 GKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEE 447 (574)
Q Consensus 368 ~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 447 (574)
...+..|..+ ..+++|+.|+|++|.|+...+..
T Consensus 150 ~l~~~~~~~~-----------------------------------------------~~l~~L~~L~L~~N~l~~l~~~~ 182 (361)
T 2xot_A 150 RFPVELIKDG-----------------------------------------------NKLPKLMLLDLSSNKLKKLPLTD 182 (361)
T ss_dssp SCCGGGTC---------------------------------------------------CTTCCEEECCSSCCCCCCHHH
T ss_pred eeCHHHhcCc-----------------------------------------------ccCCcCCEEECCCCCCCccCHHH
Confidence 4333333211 12455678888888887666667
Q ss_pred hhhcCC--CCEEeCCCCcCc
Q 041121 448 IMDLVG--LVALNLSRNHLT 465 (574)
Q Consensus 448 ~~~l~~--L~~L~Ls~N~l~ 465 (574)
|..++. ++.|+|++|.+.
T Consensus 183 ~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 183 LQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp HHHSCHHHHTTEECCSSCEE
T ss_pred hhhccHhhcceEEecCCCcc
Confidence 777766 377788877765
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.76 E-value=6.4e-18 Score=163.29 Aligned_cols=169 Identities=23% Similarity=0.249 Sum_probs=108.6
Q ss_pred CCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCccccccccccccCccceeeeccccccccc
Q 041121 250 GSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFES 329 (574)
Q Consensus 250 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~ 329 (574)
+++|++|++++|.++.. + .+..+++|+.|++++|.+++..+ +..+++|
T Consensus 45 l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L---------------------------- 92 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNL---------------------------- 92 (291)
T ss_dssp HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTC----------------------------
T ss_pred cCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCC----------------------------
Confidence 45566666666665532 2 25556666666666666654332 4555555
Q ss_pred cccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCcccccccc
Q 041121 330 WEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQ 409 (574)
Q Consensus 330 ~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 409 (574)
+.+++++|.+.+. ..+..+++|++|++++|++++. ..+.
T Consensus 93 ---~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~---------------------------------- 131 (291)
T 1h6t_A 93 ---GWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGISDI--NGLV---------------------------------- 131 (291)
T ss_dssp ---CEEECCSSCCCCG--GGGTTCTTCCEEECTTSCCCCC--GGGG----------------------------------
T ss_pred ---CEEECCCCcCCCC--hhhccCCCCCEEECCCCcCCCC--hhhc----------------------------------
Confidence 5555666655542 2366677777777777777642 1222
Q ss_pred CcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCccc
Q 041121 410 DKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLV 489 (574)
Q Consensus 410 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~ 489 (574)
.+++|+.|++++|.+++. ..+..+++|++|++++|++++..+ +..+++|+.|++++|+++
T Consensus 132 ----------------~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 132 ----------------HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp ----------------GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ----------------CCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence 244467788888887744 567778888888888888875544 777788888888888887
Q ss_pred ccCCCCccCCCCCCEEeccCCcCc
Q 041121 490 GGIPSSLSPLSVLSVMDLSYNNLS 513 (574)
Q Consensus 490 ~~~~~~l~~l~~L~~L~Ls~N~l~ 513 (574)
+. + .+..+++|+.|++++|+++
T Consensus 192 ~l-~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 192 DL-R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp BC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred CC-h-hhccCCCCCEEECcCCccc
Confidence 54 3 3777788888888888876
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.8e-18 Score=154.91 Aligned_cols=140 Identities=21% Similarity=0.307 Sum_probs=111.7
Q ss_pred cccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEecc
Q 041121 429 LIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLS 508 (574)
Q Consensus 429 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls 508 (574)
+|++|++++|.++ .+|..|.++++|++|+|++|+|+++.+..|.++++|++|+|++|+|+++.+..|.++++|+.|+|+
T Consensus 32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 3689999999998 777899999999999999999998888899999999999999999998888899999999999999
Q ss_pred CCcCcccCCC-c-chhcccCcccccCCCCCCCCCCC---------------CCCCCCCCCCCCCCCCCCCCCCCccccc
Q 041121 509 YNNLSGKIPT-G-TQLQSFNGSVYAGNPELCGLPLP---------------NKCRDEESAPGPGMTEGRDDADTSEDDM 570 (574)
Q Consensus 509 ~N~l~~~~p~-~-~~~~~l~~~~l~~Np~~c~~~l~---------------~~c~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (574)
+|+|+ .+|. . ..+..++.+++++|||.|+|.+. ..|..+....+....+.+.+.-.+.+++
T Consensus 111 ~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~~~~~~~~~~C~~P~~l~g~~l~~~~~~~~~~~~~~ 188 (193)
T 2wfh_A 111 GNDIS-VVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAGPGEMADKLLLTTPSKKFTCAAAH 188 (193)
T ss_dssp SSCCC-BCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHHSSCCCSCCBEEESGGGTTCBTTTSCGGGCCC----
T ss_pred CCCCC-eeChhhhhcCccccEEEeCCCCeecCCcCHHHHHHHHhccCCCCCcCcCCchHHCCCCcccCChHHeeehhhc
Confidence 99999 4554 3 45788899999999999999853 2466555555555555555554444433
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.5e-17 Score=154.71 Aligned_cols=134 Identities=25% Similarity=0.221 Sum_probs=102.7
Q ss_pred ceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcc
Q 041121 333 RFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKV 412 (574)
Q Consensus 333 ~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (574)
+.+++++|.+.+..+..|..+++|++|+|++|+++...+..|.+
T Consensus 43 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~------------------------------------ 86 (229)
T 3e6j_A 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS------------------------------------ 86 (229)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT------------------------------------
T ss_pred CEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc------------------------------------
Confidence 44555555555555556667778888888888887544444443
Q ss_pred cccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccC
Q 041121 413 MPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGI 492 (574)
Q Consensus 413 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~ 492 (574)
+++|+.|+|++|.|++..+..|..+++|++|+|++|+++ .+|..+..+++|++|++++|++++..
T Consensus 87 --------------l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~ 151 (229)
T 3e6j_A 87 --------------LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIP 151 (229)
T ss_dssp --------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCC
T ss_pred --------------CCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccC
Confidence 344588888888888776777888899999999999988 56777888899999999999999777
Q ss_pred CCCccCCCCCCEEeccCCcCcccCC
Q 041121 493 PSSLSPLSVLSVMDLSYNNLSGKIP 517 (574)
Q Consensus 493 ~~~l~~l~~L~~L~Ls~N~l~~~~p 517 (574)
+..|..+++|+.|++++|++.+..+
T Consensus 152 ~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 152 HGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp TTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred HHHHhCCCCCCEEEeeCCCccCCcc
Confidence 7788889999999999999986655
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.75 E-value=9.8e-18 Score=151.37 Aligned_cols=154 Identities=21% Similarity=0.253 Sum_probs=115.4
Q ss_pred ceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCc-cccccccCccccCCCCccccccccccCCCccccccccCc
Q 041121 333 RFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPK-CFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDK 411 (574)
Q Consensus 333 ~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (574)
+.+++++|.+.. +|..+. .++++|++++|.+++..+. .|.
T Consensus 11 ~~l~~s~~~l~~-ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~------------------------------------ 51 (192)
T 1w8a_A 11 TTVDCTGRGLKE-IPRDIP--LHTTELLLNDNELGRISSDGLFG------------------------------------ 51 (192)
T ss_dssp TEEECTTSCCSS-CCSCCC--TTCSEEECCSCCCCSBCCSCSGG------------------------------------
T ss_pred CEEEcCCCCcCc-CccCCC--CCCCEEECCCCcCCccCCccccc------------------------------------
Confidence 667888887764 443332 3788888888887754443 233
Q ss_pred ccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCccccc
Q 041121 412 VMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGG 491 (574)
Q Consensus 412 ~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~ 491 (574)
.+++|++|+|++|.|++..|..|.++++|++|+|++|+|++..+..|.++++|++|++++|++++.
T Consensus 52 --------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 117 (192)
T 1w8a_A 52 --------------RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCV 117 (192)
T ss_dssp --------------GCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEE
T ss_pred --------------cCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCee
Confidence 344568999999999888888899999999999999999988888888999999999999999988
Q ss_pred CCCCccCCCCCCEEeccCCcCcccCCCcchhcccCcccccCCCCCCCC
Q 041121 492 IPSSLSPLSVLSVMDLSYNNLSGKIPTGTQLQSFNGSVYAGNPELCGL 539 (574)
Q Consensus 492 ~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~l~~Np~~c~~ 539 (574)
.|..|..+++|+.|++++|++++..+.......+....+.++...|+-
T Consensus 118 ~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~ 165 (192)
T 1w8a_A 118 MPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGA 165 (192)
T ss_dssp CTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCS
T ss_pred CHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCC
Confidence 888999999999999999999876654322233333345555555543
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-17 Score=177.34 Aligned_cols=170 Identities=22% Similarity=0.266 Sum_probs=92.4
Q ss_pred CCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCcccccc
Q 041121 227 SNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFT 306 (574)
Q Consensus 227 ~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~ 306 (574)
..|+.|++++|.+..+. .+..+++|+.|+|++|.+++..+ +..+++|+.|+|++|.+++. + .+..+++|
T Consensus 43 ~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L----- 111 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL-S-SLKDLKKL----- 111 (605)
T ss_dssp TTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC-T-TSTTCTTC-----
T ss_pred CCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC-h-hhccCCCC-----
Confidence 44444555555544433 23445566666666666654332 55566666666666665531 1 34444444
Q ss_pred ccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCC
Q 041121 307 QQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSS 386 (574)
Q Consensus 307 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~ 386 (574)
+.|+|++|.+... ..+..+++|+.|+|++|.+++. ..+.
T Consensus 112 --------------------------~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~----------- 150 (605)
T 1m9s_A 112 --------------------------KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLS----------- 150 (605)
T ss_dssp --------------------------CEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGG-----------
T ss_pred --------------------------CEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhc-----------
Confidence 5555555555542 2355556666666666665532 1222
Q ss_pred CCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcc
Q 041121 387 DPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTG 466 (574)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 466 (574)
.+++|+.|+|++|.+++..| +..+++|++|+|++|.|++
T Consensus 151 ---------------------------------------~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 151 ---------------------------------------RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp ---------------------------------------SCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred ---------------------------------------ccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC
Confidence 23445666666666664433 6666666666666666664
Q ss_pred cCCccccCCCCCCEEeCCCCccccc
Q 041121 467 QNSPKIGQLKSLDFLDLSRNQLVGG 491 (574)
Q Consensus 467 ~~~~~~~~l~~L~~L~L~~N~i~~~ 491 (574)
. ..+..+++|+.|+|++|++...
T Consensus 190 l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 190 L--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp C--GGGTTCTTCSEEECCSEEEECC
T ss_pred C--hHHccCCCCCEEEccCCcCcCC
Confidence 3 2456666666666666666643
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-17 Score=150.14 Aligned_cols=139 Identities=22% Similarity=0.261 Sum_probs=118.6
Q ss_pred cccEEEccCCcCCCCCcH-hhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEec
Q 041121 429 LIKSLELSSNKLNGAVPE-EIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDL 507 (574)
Q Consensus 429 ~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~L 507 (574)
++++|++++|.+++..+. .|..+++|++|+|++|+|++..|..|.++++|++|+|++|+|++..+..|.++++|+.|+|
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 369999999999866654 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcCcccCCCc-chhcccCcccccCCCCCCCCCCC---------------CCCCCCCCCCCCCCCCCCCCCCCcc
Q 041121 508 SYNNLSGKIPTG-TQLQSFNGSVYAGNPELCGLPLP---------------NKCRDEESAPGPGMTEGRDDADTSE 567 (574)
Q Consensus 508 s~N~l~~~~p~~-~~~~~l~~~~l~~Np~~c~~~l~---------------~~c~~~~~~~~~~~~~~~~~~~~~~ 567 (574)
++|+|++..|.. ..++.++.+++++|||.|+|++. ..|..+....+..+.+.+.++-.|.
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~~l~~~~l~~l~~~~~~C~ 185 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEFKCS 185 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSSTTTTTSBGGGSCTTTCCCC
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCChHHcCCChhhCcHhhcCcC
Confidence 999999888876 46789999999999999999963 2577666665555555555554443
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-17 Score=175.28 Aligned_cols=173 Identities=21% Similarity=0.198 Sum_probs=118.1
Q ss_pred hcCCCCCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCCCCc--CCcccEEEccCCcCCCCCCccccCCCCCC
Q 041121 8 SLRLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNI--SSNFVSIDLSFNQLQGSIPDSSQHMVYLE 85 (574)
Q Consensus 8 l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 85 (574)
+..+++|+.|++++|.+..++ .|..+++|++|+|++|+++.+..+ .++|++|+|++|.++. ++ .+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~----~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ----GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKD-LS-SLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT----TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC-CT-TSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCCCCCh----HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCC-Ch-hhccCCCCC
Confidence 345677777778777777764 366777788888877777776332 3677777777777764 22 577777777
Q ss_pred EEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccccCCCCCCCCCCCEEEccCccccccc
Q 041121 86 HLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTI 165 (574)
Q Consensus 86 ~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~L~~n~i~~~~ 165 (574)
+|+|++|.+.+. + .+..+++ |+.|+|++|++++. +.+..+++|++|+|++|.+.+..
T Consensus 113 ~L~Ls~N~l~~l-~--------------------~l~~l~~-L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~ 169 (605)
T 1m9s_A 113 SLSLEHNGISDI-N--------------------GLVHLPQ-LESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIV 169 (605)
T ss_dssp EEECTTSCCCCC-G--------------------GGGGCTT-CSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCG
T ss_pred EEEecCCCCCCC-c--------------------cccCCCc-cCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCch
Confidence 777777777632 2 3455666 78888888877755 44777778888888888777555
Q ss_pred chhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCC
Q 041121 166 NKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPI 222 (574)
Q Consensus 166 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~ 222 (574)
| +..+++|+.|+|++|.|+.++ . +..+++|+.|++++|.+.+..
T Consensus 170 ~--l~~l~~L~~L~Ls~N~i~~l~---------~--l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 170 P--LAGLTKLQNLYLSKNHISDLR---------A--LAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp G--GTTCTTCCEEECCSSCCCBCG---------G--GTTCTTCSEEECCSEEEECCC
T ss_pred h--hccCCCCCEEECcCCCCCCCh---------H--HccCCCCCEEEccCCcCcCCc
Confidence 5 777777888888877776432 1 355666666666666666543
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.4e-18 Score=153.43 Aligned_cols=150 Identities=19% Similarity=0.224 Sum_probs=81.4
Q ss_pred cCCCCCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCCCCc--CCcccEEEccCCcCCCCCCccccCCCCCCE
Q 041121 9 LRLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNI--SSNFVSIDLSFNQLQGSIPDSSQHMVYLEH 86 (574)
Q Consensus 9 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 86 (574)
..+++|++|++++|.++.++. +..+++|++|++++|.++.+..+ .++|++|++++|.+++..+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~----l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTG----IEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTT----GGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCccChHH----HhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 345566777777776665542 55666666666666665554222 255566666666555545555555666666
Q ss_pred EEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCc-ccccCCCCCCCCCCCEEEccCccccccc
Q 041121 87 LSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNH-FTGPIPDLGGFSSMKRLYLSDNLLNGTI 165 (574)
Q Consensus 87 L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~-l~~~~~~l~~l~~L~~L~L~~n~i~~~~ 165 (574)
|++++|++++..+. .+..+++ |++|++++|+ ++. .+.+..+++|++|++++|++++.
T Consensus 117 L~Ls~n~i~~~~~~-------------------~l~~l~~-L~~L~L~~n~~i~~-~~~l~~l~~L~~L~l~~n~i~~~- 174 (197)
T 4ezg_A 117 LDISHSAHDDSILT-------------------KINTLPK-VNSIDLSYNGAITD-IMPLKTLPELKSLNIQFDGVHDY- 174 (197)
T ss_dssp EECCSSBCBGGGHH-------------------HHTTCSS-CCEEECCSCTBCCC-CGGGGGCSSCCEEECTTBCCCCC-
T ss_pred EEecCCccCcHhHH-------------------HHhhCCC-CCEEEccCCCCccc-cHhhcCCCCCCEEECCCCCCcCh-
Confidence 66666555543333 2333444 5566665555 332 22355555555555555555532
Q ss_pred chhhhccCCCCEEEccCCCC
Q 041121 166 NKSIGQIFKLEITCLSQNSL 185 (574)
Q Consensus 166 ~~~~~~l~~L~~L~Ls~N~l 185 (574)
+ .+..+++|++|++++|+|
T Consensus 175 ~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 175 R-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp T-TGGGCSSCCEEEECBC--
T ss_pred H-HhccCCCCCEEEeeCccc
Confidence 1 455555555555555554
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-17 Score=164.32 Aligned_cols=214 Identities=11% Similarity=0.039 Sum_probs=127.1
Q ss_pred CCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCccc----ccCCCcccccccCc
Q 041121 226 PSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSF----SGRIPDSMGFLQNI 301 (574)
Q Consensus 226 ~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l----~~~~~~~~~~l~~L 301 (574)
+.+|++++|.+ .++.+...+|.++++|+++++.+|.+..+.+.+|.++.++..+....+.. .......|..+..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 35555666666 66667777777777888888887777666677777777776666655322 22223344444444
Q ss_pred cccccccccccCccceeeeccccccccc---------cccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCc
Q 041121 302 QTQFTQQQFNRRTVFIVWELLTTQTFES---------WEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPK 372 (574)
Q Consensus 302 ~~l~~~~~~~~~~~l~~l~~~~~~~~~~---------~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 372 (574)
+.. +.+...+.++. .....+.+.++-...........+++|+.++|++|+++.+.+.
T Consensus 179 ~~~--------------i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~ 244 (329)
T 3sb4_A 179 ETT--------------IQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDF 244 (329)
T ss_dssp EEE--------------EEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTT
T ss_pred cee--------------EEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHh
Confidence 210 01100000000 0002233322211100001111367778888887777755556
Q ss_pred cccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcC
Q 041121 373 CFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLV 452 (574)
Q Consensus 373 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 452 (574)
+|.++.+ |+.+++.+| ++.+.+.+|.++.
T Consensus 245 aF~~~~~--------------------------------------------------L~~l~l~~n-i~~I~~~aF~~~~ 273 (329)
T 3sb4_A 245 TFAQKKY--------------------------------------------------LLKIKLPHN-LKTIGQRVFSNCG 273 (329)
T ss_dssp TTTTCTT--------------------------------------------------CCEEECCTT-CCEECTTTTTTCT
T ss_pred hhhCCCC--------------------------------------------------CCEEECCcc-cceehHHHhhCCh
Confidence 6655554 467777776 6656667788888
Q ss_pred CCC-EEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEe
Q 041121 453 GLV-ALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMD 506 (574)
Q Consensus 453 ~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~ 506 (574)
+|+ .+++.+ .++.+.+.+|.++++|+.+++++|+++.+.+.+|.++++|+.++
T Consensus 274 ~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 274 RLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred hccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 887 888877 67767777888888888888888888777777888888888775
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.71 E-value=7.1e-17 Score=146.48 Aligned_cols=125 Identities=12% Similarity=0.137 Sum_probs=92.5
Q ss_pred ceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcc
Q 041121 333 RFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKV 412 (574)
Q Consensus 333 ~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (574)
+.+++++|.+.. ...+..+++|++|++++|.+++..+..+..
T Consensus 69 ~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~------------------------------------ 110 (197)
T 4ezg_A 69 KDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSG------------------------------------ 110 (197)
T ss_dssp SEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTT------------------------------------
T ss_pred CEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcC------------------------------------
Confidence 555555554332 235667788888888888887655555543
Q ss_pred cccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCc-CcccCCccccCCCCCCEEeCCCCccccc
Q 041121 413 MPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNH-LTGQNSPKIGQLKSLDFLDLSRNQLVGG 491 (574)
Q Consensus 413 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~ 491 (574)
+++|++|++++|.+++..+..+..+++|++|++++|+ ++. ++ .+..+++|++|++++|++++.
T Consensus 111 --------------l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~~ 174 (197)
T 4ezg_A 111 --------------LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHDY 174 (197)
T ss_dssp --------------CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCCC
T ss_pred --------------CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcCh
Confidence 3446888999999887778888899999999999998 664 44 688889999999999998854
Q ss_pred CCCCccCCCCCCEEeccCCcCc
Q 041121 492 IPSSLSPLSVLSVMDLSYNNLS 513 (574)
Q Consensus 492 ~~~~l~~l~~L~~L~Ls~N~l~ 513 (574)
. .+..+++|+.|++++|+|.
T Consensus 175 ~--~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 175 R--GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp T--TGGGCSSCCEEEECBC---
T ss_pred H--HhccCCCCCEEEeeCcccC
Confidence 3 6888899999999999886
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.70 E-value=7.6e-18 Score=166.09 Aligned_cols=263 Identities=11% Similarity=0.045 Sum_probs=155.7
Q ss_pred CCCCCEEEccCCcCc--cCchhhhhcccCCCCCcccccccccccc--------ccccCcEEEccCCcccccCCC-CCCCC
Q 041121 81 MVYLEHLSLMFNELE--GGIPKFFGNMLNLSDNKLAIIQNMSSGC--------LKNSLESLHLEVNHFTGPIPD-LGGFS 149 (574)
Q Consensus 81 l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~n~l~~l~~~~~~~--------l~~~L~~L~L~~n~l~~~~~~-l~~l~ 149 (574)
+++|++|||++|++. ...+..+.. ..+.......||..+|.+ +++ |+.+++.. .++.+.+. |.+++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~-~~~~~~~~~~I~~~aF~~~~~~~~~g~~~-L~~l~L~~-~i~~I~~~aF~~~~ 124 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPN-GKFYIYMANFVPAYAFSNVVNGVTKGKQT-LEKVILSE-KIKNIEDAAFKGCD 124 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGG-GCCEEECTTEECTTTTEEEETTEEEECTT-CCC-CBCT-TCCEECTTTTTTCT
T ss_pred hccCeEEecCcceeEEecCccccccc-cccccccccccCHHHhcccccccccccCC-CcEEECCc-cccchhHHHhhcCc
Confidence 677888888877776 222222222 111111222567778888 898 99999999 88877776 99999
Q ss_pred CCCEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCC-eEeccCCc-ccCC---CCC
Q 041121 150 SMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNP-GIDISSNH-FEGP---IPP 224 (574)
Q Consensus 150 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~-~L~l~~n~-l~~~---~~~ 224 (574)
+|++|++.+|.+..+.+.+|.++.++..+.+..+.... -...+....+..+..++ .+.+.... +... ...
T Consensus 125 ~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~-----~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~ 199 (329)
T 3sb4_A 125 NLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYR-----FKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGL 199 (329)
T ss_dssp TCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHH-----TSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTC
T ss_pred ccceEEcCCCCccccchhhhcCCCceEEecCcchhhhh-----ccccccccccccccccceeEEecCCCcHHHHHhhccc
Confidence 99999999999987888899988888777766532100 00011111133344444 23332211 0000 000
Q ss_pred CCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCcccc
Q 041121 225 LPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQ 304 (574)
Q Consensus 225 ~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l 304 (574)
.+.++..+.+.++-...........+++|+++++++|.++.+.+.+|.++.+|+.+++.+| ++...+.+|.++.+|
T Consensus 200 ~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L--- 275 (329)
T 3sb4_A 200 QPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRL--- 275 (329)
T ss_dssp CGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC---
T ss_pred CccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhc---
Confidence 1233444444443211111111112567777777777776666666777777777777766 665666667777666
Q ss_pred ccccccccCccceeeeccccccccccccc-eEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccc
Q 041121 305 FTQQQFNRRTVFIVWELLTTQTFESWEER-FVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQE 383 (574)
Q Consensus 305 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~-~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l 383 (574)
+ .+++.+ .+..+.+.+|.+|++|+.++++.|.++.+.+.+|.++++|+.+
T Consensus 276 ----------------------------~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 276 ----------------------------AGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp ----------------------------CEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEE
T ss_pred ----------------------------cEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhh
Confidence 5 666666 5555666777777777777777777776666777777777665
Q ss_pred c
Q 041121 384 R 384 (574)
Q Consensus 384 ~ 384 (574)
+
T Consensus 327 y 327 (329)
T 3sb4_A 327 Y 327 (329)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.7e-17 Score=154.65 Aligned_cols=78 Identities=26% Similarity=0.393 Sum_probs=58.2
Q ss_pred ccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccC
Q 041121 430 IKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSY 509 (574)
Q Consensus 430 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~ 509 (574)
|+.|++++|.+++ ++ .+..+++|++|+|++|++++. + .+..+++|++|++++|++++. ..+..+++|+.|++++
T Consensus 108 L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 108 LSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTG 181 (263)
T ss_dssp CCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEE
T ss_pred ccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCC
Confidence 5777888887764 33 477778888888888887754 2 577778888888888888765 5677778888888888
Q ss_pred CcCc
Q 041121 510 NNLS 513 (574)
Q Consensus 510 N~l~ 513 (574)
|+++
T Consensus 182 N~~~ 185 (263)
T 1xeu_A 182 QKCV 185 (263)
T ss_dssp EEEE
T ss_pred Cccc
Confidence 8877
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.69 E-value=9.1e-16 Score=154.42 Aligned_cols=85 Identities=7% Similarity=0.034 Sum_probs=63.1
Q ss_pred ccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCC-CCCE
Q 041121 426 TLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLS-VLSV 504 (574)
Q Consensus 426 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~-~L~~ 504 (574)
++++|+.+++.+ .++.+...+|.+|.+|+.+.|..+ ++.+...+|.++ +|+.+++++|.+....+..|.+++ .++.
T Consensus 298 ~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~ 374 (401)
T 4fdw_A 298 GCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITV 374 (401)
T ss_dssp TCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCE
T ss_pred CCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccE
Confidence 344456777763 466566678888888888888554 666777888888 888888888888877777788774 6788
Q ss_pred EeccCCcCc
Q 041121 505 MDLSYNNLS 513 (574)
Q Consensus 505 L~Ls~N~l~ 513 (574)
|++..+.+.
T Consensus 375 l~vp~~~~~ 383 (401)
T 4fdw_A 375 IRVPAESVE 383 (401)
T ss_dssp EEECGGGHH
T ss_pred EEeCHHHHH
Confidence 888777655
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.6e-16 Score=151.02 Aligned_cols=162 Identities=17% Similarity=0.206 Sum_probs=133.7
Q ss_pred CCCCCccccccccccccccccCcEEEccCCcccccCCCCCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCC
Q 041121 107 NLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLT 186 (574)
Q Consensus 107 ~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 186 (574)
+++.+.++.++ .+..+++ |++|++++|+++.. +.+..+++|++|++++|++++..+ +..+++|++|++++|+++
T Consensus 25 ~l~~~~i~~~~--~~~~l~~-L~~L~l~~n~i~~l-~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~ 98 (263)
T 1xeu_A 25 NLGKQSVTDLV--SQKELSG-VQNFNGDNSNIQSL-AGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLK 98 (263)
T ss_dssp HHTCSCTTSEE--CHHHHTT-CSEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCS
T ss_pred HhcCCCccccc--chhhcCc-CcEEECcCCCcccc-hHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccC
Confidence 34455555544 4677888 99999999999864 468899999999999999986655 999999999999999998
Q ss_pred cccCccccccCCchhhcCCCCCCeEeccCCcccCCCC-CCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCC
Q 041121 187 DLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIP-PLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSG 265 (574)
Q Consensus 187 ~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~ 265 (574)
.++. . .. ++|+.|++++|++++... ..+++|+.|++++|+++++. .+..+++|++|++++|.+++
T Consensus 99 ~l~~---------~--~~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 99 NLNG---------I--PS-ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CCTT---------C--CC-SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCB
T ss_pred CcCc---------c--cc-CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcc
Confidence 6543 1 22 789999999999987532 22789999999999999875 56788999999999999986
Q ss_pred CCCcchhcCCCCcEEEccCcccccC
Q 041121 266 KLPDCWWMFDSLVILDLGNNSFSGR 290 (574)
Q Consensus 266 ~~~~~~~~l~~L~~L~L~~N~l~~~ 290 (574)
. ..+..+++|+.|++++|.+.+.
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEEECC
T ss_pred h--HHhccCCCCCEEeCCCCcccCC
Confidence 5 6788999999999999999855
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.66 E-value=3.4e-15 Score=150.20 Aligned_cols=68 Identities=9% Similarity=0.040 Sum_probs=42.4
Q ss_pred CCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCc
Q 041121 443 AVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLS 513 (574)
Q Consensus 443 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~ 513 (574)
+.+.+|.+|++|+.+.|. +.++.+...+|.++++|+.+++..| ++.+...+|.++ +|+.+++++|.+.
T Consensus 291 I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 291 IHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp ECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred ECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 344566666666666666 3455556666666666666666444 555556666666 6666666666655
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=8.6e-19 Score=184.50 Aligned_cols=213 Identities=17% Similarity=0.130 Sum_probs=129.5
Q ss_pred CCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCC-Cccc----CccccccCCchhhcCCCCCCeEe-ccCCcc
Q 041121 145 LGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSL-TDLA----NIQIKGKLPDLSSRFGTSNPGID-ISSNHF 218 (574)
Q Consensus 145 l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~----~~~~~~~lp~~~~~~~~~L~~L~-l~~n~l 218 (574)
+...++|+.|+|++|+++ .+|..++.+++|+.|++++|.. ..++ .....+..|.. +..+++|+.|+ ++.|.+
T Consensus 345 ~~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~-l~~l~~L~~L~~l~~n~~ 422 (567)
T 1dce_A 345 SATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKET-LQYFSTLKAVDPMRAAYL 422 (567)
T ss_dssp CSTTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHH-HHHHHHHHHHCGGGHHHH
T ss_pred cccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHH-HHHHHhcccCcchhhccc
Confidence 356788888888888887 6788888888888888866531 0000 00011222222 44455555555 444433
Q ss_pred cCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccc
Q 041121 219 EGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFL 298 (574)
Q Consensus 219 ~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 298 (574)
. .|..+.+.+|.+..+.+ ..|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|
T Consensus 423 ~--------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp------ 479 (567)
T 1dce_A 423 D--------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALP------ 479 (567)
T ss_dssp H--------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCC------
T ss_pred c--------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccc------
Confidence 2 34445556666655443 247777777777774 454 777777777777777766 334
Q ss_pred cCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccc
Q 041121 299 QNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFT 378 (574)
Q Consensus 299 ~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 378 (574)
..+..+++|+.|+|++|.+++ +| .+..
T Consensus 480 -------------------------------------------------~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~-- 506 (567)
T 1dce_A 480 -------------------------------------------------PALAALRCLEVLQASDNALEN-VD-GVAN-- 506 (567)
T ss_dssp -------------------------------------------------GGGGGCTTCCEEECCSSCCCC-CG-GGTT--
T ss_pred -------------------------------------------------hhhhcCCCCCEEECCCCCCCC-Cc-ccCC--
Confidence 344555666777777777664 33 3332
Q ss_pred cCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCC-cHhhhhcCCCCEE
Q 041121 379 AMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAV-PEEIMDLVGLVAL 457 (574)
Q Consensus 379 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L 457 (574)
+++|+.|+|++|.|++.. |..|..+++|++|
T Consensus 507 ------------------------------------------------l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L 538 (567)
T 1dce_A 507 ------------------------------------------------LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 538 (567)
T ss_dssp ------------------------------------------------CSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred ------------------------------------------------CCCCcEEECCCCCCCCCCCcHHHhcCCCCCEE
Confidence 333577777777777554 7777777777777
Q ss_pred eCCCCcCcccCCc---cccCCCCCCEEeC
Q 041121 458 NLSRNHLTGQNSP---KIGQLKSLDFLDL 483 (574)
Q Consensus 458 ~Ls~N~l~~~~~~---~~~~l~~L~~L~L 483 (574)
+|++|.+++.++. .+..+++|+.|++
T Consensus 539 ~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 539 NLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp ECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred EecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 7777777755442 2334677777754
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.3e-18 Score=181.20 Aligned_cols=192 Identities=21% Similarity=0.175 Sum_probs=129.0
Q ss_pred cCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcc-------------cccCCCcccccccCccccc-cccccccC
Q 041121 248 ISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNS-------------FSGRIPDSMGFLQNIQTQF-TQQQFNRR 313 (574)
Q Consensus 248 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-------------l~~~~~~~~~~l~~L~~l~-~~~~~~~~ 313 (574)
...+.|+.|++++|.++ .+|..++.+++|+.|++++|. ..+..|..+..+++|+.++ .... ..
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n--~~ 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA--YL 422 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH--HH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc--cc
Confidence 35677778888888776 567777778888888877664 3334444555555554332 1100 00
Q ss_pred ccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccc
Q 041121 314 TVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVY 393 (574)
Q Consensus 314 ~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~ 393 (574)
..+ ..+.+.+|.+....+ ..|+.|+|++|.+++ +|. +..
T Consensus 423 ~~L----------------~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~----------------- 461 (567)
T 1dce_A 423 DDL----------------RSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQ----------------- 461 (567)
T ss_dssp HHH----------------HHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGG-----------------
T ss_pred chh----------------hhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccc-----------------
Confidence 000 233344444443211 247888888888874 443 443
Q ss_pred cccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCcccc
Q 041121 394 YYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIG 473 (574)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 473 (574)
+++|+.|+|++|.|+ .+|..|..+++|++|+|++|+|++ +| .|.
T Consensus 462 ---------------------------------l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~ 505 (567)
T 1dce_A 462 ---------------------------------LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVA 505 (567)
T ss_dssp ---------------------------------GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGT
T ss_pred ---------------------------------cccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccC
Confidence 344588888888888 777888888888888888888886 45 788
Q ss_pred CCCCCCEEeCCCCcccccC-CCCccCCCCCCEEeccCCcCcccCCCc
Q 041121 474 QLKSLDFLDLSRNQLVGGI-PSSLSPLSVLSVMDLSYNNLSGKIPTG 519 (574)
Q Consensus 474 ~l~~L~~L~L~~N~i~~~~-~~~l~~l~~L~~L~Ls~N~l~~~~p~~ 519 (574)
++++|++|+|++|+|++.. |..+..+++|+.|+|++|++++..|..
T Consensus 506 ~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 506 NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp TCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred CCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence 8888888888888888776 888888888888888888888655543
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=6.9e-16 Score=139.14 Aligned_cols=130 Identities=24% Similarity=0.262 Sum_probs=110.3
Q ss_pred ceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcc
Q 041121 333 RFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKV 412 (574)
Q Consensus 333 ~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (574)
+.++++++.+..+ |..+ .+++++|++++|.++ .+|..|.+
T Consensus 13 ~~l~~~~~~l~~i-p~~~--~~~l~~L~L~~n~i~-~ip~~~~~------------------------------------ 52 (193)
T 2wfh_A 13 TVVRCSNKGLKVL-PKGI--PRDVTELYLDGNQFT-LVPKELSN------------------------------------ 52 (193)
T ss_dssp TEEECTTSCCSSC-CSCC--CTTCCEEECCSSCCC-SCCGGGGG------------------------------------
T ss_pred CEEEcCCCCCCcC-CCCC--CCCCCEEECCCCcCc-hhHHHhhc------------------------------------
Confidence 6788888888753 4333 257888999988887 55555544
Q ss_pred cccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccC
Q 041121 413 MPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGI 492 (574)
Q Consensus 413 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~ 492 (574)
+++|+.|+|++|.|++..+..|.++++|++|+|++|+|+++.+..|.++++|++|+|++|+|+...
T Consensus 53 --------------l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~ 118 (193)
T 2wfh_A 53 --------------YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVP 118 (193)
T ss_dssp --------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred --------------ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeC
Confidence 444699999999999888889999999999999999999999999999999999999999999888
Q ss_pred CCCccCCCCCCEEeccCCcCcccC
Q 041121 493 PSSLSPLSVLSVMDLSYNNLSGKI 516 (574)
Q Consensus 493 ~~~l~~l~~L~~L~Ls~N~l~~~~ 516 (574)
+..|..+++|+.|++++|++.+..
T Consensus 119 ~~~~~~l~~L~~L~L~~N~~~C~c 142 (193)
T 2wfh_A 119 EGAFNDLSALSHLAIGANPLYCDC 142 (193)
T ss_dssp TTTTTTCTTCCEEECCSSCEECSG
T ss_pred hhhhhcCccccEEEeCCCCeecCC
Confidence 888999999999999999998543
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-15 Score=135.21 Aligned_cols=111 Identities=27% Similarity=0.277 Sum_probs=67.6
Q ss_pred ccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccC
Q 041121 430 IKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSY 509 (574)
Q Consensus 430 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~ 509 (574)
|++|++++|.+++..+..|..+++|++|++++|++++..+..|.++++|++|++++|++++..+..|..+++|+.|++++
T Consensus 30 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 109 (177)
T 2o6r_A 30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDT 109 (177)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcC
Confidence 46666666666655555556666666666666666655555566666666666666666655555566666666666666
Q ss_pred CcCcccCCCc-chhcccCcccccCCCCCCCCC
Q 041121 510 NNLSGKIPTG-TQLQSFNGSVYAGNPELCGLP 540 (574)
Q Consensus 510 N~l~~~~p~~-~~~~~l~~~~l~~Np~~c~~~ 540 (574)
|++++..+.. ..++.++.+++++||+.|+|+
T Consensus 110 N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 110 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 6666322222 235566666666666666655
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-16 Score=173.56 Aligned_cols=54 Identities=22% Similarity=0.317 Sum_probs=24.8
Q ss_pred cccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCc
Q 041121 246 CSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNI 301 (574)
Q Consensus 246 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 301 (574)
.+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+..+++|
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L 272 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNL 272 (727)
T ss_dssp ---CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTC
T ss_pred hhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCC
Confidence 3344455555555555554 33333334555555555555554 444444444444
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-15 Score=133.87 Aligned_cols=93 Identities=28% Similarity=0.294 Sum_probs=80.6
Q ss_pred cccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCC-ccccCCCCCCEEeCCCCcccccCC---CCccCCC
Q 041121 425 STLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNS-PKIGQLKSLDFLDLSRNQLVGGIP---SSLSPLS 500 (574)
Q Consensus 425 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~i~~~~~---~~l~~l~ 500 (574)
..+++|++|++++|.+++.+|..+..+++|++|+|++|++++... ..+..+++|++|++++|++++..+ ..+..++
T Consensus 68 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~ 147 (168)
T 2ell_A 68 PKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLP 147 (168)
T ss_dssp CCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCS
T ss_pred ccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCc
Confidence 346668999999999997788888889999999999999986532 788999999999999999996655 4789999
Q ss_pred CCCEEeccCCcCcccCCC
Q 041121 501 VLSVMDLSYNNLSGKIPT 518 (574)
Q Consensus 501 ~L~~L~Ls~N~l~~~~p~ 518 (574)
+|+.|++++|.+. .+|.
T Consensus 148 ~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 148 QLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp SCCEETTEETTSC-BCCS
T ss_pred cCcEecCCCCChh-hccc
Confidence 9999999999998 6665
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.61 E-value=7.6e-17 Score=175.07 Aligned_cols=152 Identities=20% Similarity=0.177 Sum_probs=53.0
Q ss_pred CCCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCCCCcCCcccEEEccCCcCCCCCCccccCCCCCCEEEccC
Q 041121 12 HSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMF 91 (574)
Q Consensus 12 ~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 91 (574)
+.++.|+|.+|.+...+. ..|+.++|+.+.|. .++++.|.+. ..+..+..+++|++|+|++
T Consensus 173 ~~~~~l~L~~n~~~~~~~--------~~l~~l~Ls~~~i~----------~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~ 233 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQ--------ALLQHKKLSQYSID----------EDDDIENRMV-MPKDSKYDDQLWHALDLSN 233 (727)
T ss_dssp --------------------------------------------------------------------CCCCCCEEECTT
T ss_pred CccceEEeeCCCCCcchh--------hHhhcCccCccccc----------Ccccccccee-cChhhhccCCCCcEEECCC
Confidence 446666666666655532 12334444444433 2344445444 5566677777777777777
Q ss_pred CcCccCchhhhhccc-----CCCCCccccccccccccccccCcEEEccCCcccccCCCCCCCCCCCEEEccCcccccccc
Q 041121 92 NELEGGIPKFFGNML-----NLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTIN 166 (574)
Q Consensus 92 n~l~~~~~~~~~~l~-----~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~L~~n~i~~~~~ 166 (574)
|.+. .+|..+..+. +|++|.++.+|. .+..+++ |++|+|++|+++.++..|.++++|++|+|++|.|+ .+|
T Consensus 234 n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~-L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~-~lp 309 (727)
T 4b8c_D 234 LQIF-NISANIFKYDFLTRLYLNGNSLTELPA-EIKNLSN-LRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVT-TLP 309 (727)
T ss_dssp SCCS-CCCGGGGGCCSCSCCBCTTSCCSCCCG-GGGGGTT-CCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCC-CCC
T ss_pred CCCC-CCChhhcCCCCCCEEEeeCCcCcccCh-hhhCCCC-CCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCC-ccC
Confidence 7776 4444332221 233333333333 4444554 55555555555533222555555555555555554 334
Q ss_pred hhhhccCCCCEEEccCCCCC
Q 041121 167 KSIGQIFKLEITCLSQNSLT 186 (574)
Q Consensus 167 ~~~~~l~~L~~L~Ls~N~l~ 186 (574)
..|..+++|++|+|++|.|+
T Consensus 310 ~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 310 WEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp SSTTSCTTCCCEECTTSCCC
T ss_pred hhhhcCCCccEEeCCCCccC
Confidence 44555555555555555544
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.1e-14 Score=143.84 Aligned_cols=310 Identities=10% Similarity=0.030 Sum_probs=184.7
Q ss_pred cccccccccccccccCcEEEccCCcccccCCC-CCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCc
Q 041121 113 LAIIQNMSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANI 191 (574)
Q Consensus 113 l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~ 191 (574)
++.|+..+|.++.+ |+.+.+.. .++.+... |.++++|+.+++..+ ++.+...+|.++.+|+.+.+..+ ++.+...
T Consensus 59 VtsIg~~AF~~c~~-L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~ 134 (394)
T 4fs7_A 59 VVSIGYAAFQGCRK-VTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVE 134 (394)
T ss_dssp EEEECTTTTTTCTT-EEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred EeEhHHHHhhCCCC-ceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecce
Confidence 45577778888888 88888864 36655555 888888888888654 65566678888888887766543 4444333
Q ss_pred cccccCCchhhcCCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcch
Q 041121 192 QIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCW 271 (574)
Q Consensus 192 ~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 271 (574)
.|.+ +.... ..+ ...+..+...+|..+.+|+.+.+.++... ....+|
T Consensus 135 aF~~---------~~~~~-~~~----------------------~~~~~~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F 181 (394)
T 4fs7_A 135 AFKG---------CDFKE-ITI----------------------PEGVTVIGDEAFATCESLEYVSLPDSMET-LHNGLF 181 (394)
T ss_dssp TTTT---------CCCSE-EEC----------------------CTTCCEECTTTTTTCTTCCEEECCTTCCE-ECTTTT
T ss_pred eeec---------ccccc-ccc----------------------CccccccchhhhcccCCCcEEecCCccce-eccccc
Confidence 3322 11111 110 11112223344555555555555443222 344455
Q ss_pred hcCCCCcEEEccCcccccCCCcccccccCcccccccc-------ccccCccceeeeccccccccccccceEEecCceecc
Q 041121 272 WMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQ-------QFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHG 344 (574)
Q Consensus 272 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~-------~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~ 344 (574)
.++.+|+.+++..+ ++......|..+..|+.+.... .......+ +.+.+... +..
T Consensus 182 ~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l----------------~~i~ip~~-~~~ 243 (394)
T 4fs7_A 182 SGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGV----------------KNIIIPDS-FTE 243 (394)
T ss_dssp TTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCC----------------CEEEECTT-CCE
T ss_pred cCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCC----------------ceEEECCC-cee
Confidence 55555555555444 3323334444444443222110 00000111 33444322 222
Q ss_pred CCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccc
Q 041121 345 KTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYR 424 (574)
Q Consensus 345 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (574)
+...++..+..++.+.+..+... +...+|..+..++........ .....|
T Consensus 244 i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~-----------------------------i~~~~F 293 (394)
T 4fs7_A 244 LGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVI-----------------------------VPEKTF 293 (394)
T ss_dssp ECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSE-----------------------------ECTTTT
T ss_pred cccccccccccceeEEcCCCcce-eeccccccccccceeccCcee-----------------------------eccccc
Confidence 34446666777777777666443 455566666665544322211 122345
Q ss_pred cccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCE
Q 041121 425 STLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSV 504 (574)
Q Consensus 425 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~ 504 (574)
..+.+|+.+.+..+ ++.+...+|.++.+|+.++|..+ ++.+...+|.++.+|+.+++..+ ++.+...+|.++.+|+.
T Consensus 294 ~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~ 370 (394)
T 4fs7_A 294 YGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKK 370 (394)
T ss_dssp TTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCE
T ss_pred cccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCE
Confidence 67788899999765 66566788999999999999754 77677889999999999999877 77788889999999999
Q ss_pred EeccCC
Q 041121 505 MDLSYN 510 (574)
Q Consensus 505 L~Ls~N 510 (574)
+++..+
T Consensus 371 i~lp~~ 376 (394)
T 4fs7_A 371 VELPKR 376 (394)
T ss_dssp EEEEGG
T ss_pred EEECCC
Confidence 988654
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.5e-15 Score=131.50 Aligned_cols=133 Identities=22% Similarity=0.204 Sum_probs=111.1
Q ss_pred ceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcc
Q 041121 333 RFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKV 412 (574)
Q Consensus 333 ~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (574)
+.++++++++.... ..+ .++|++|++++|++++..+..|..
T Consensus 10 ~~l~~~~~~l~~~p-~~~--~~~l~~L~l~~n~l~~~~~~~~~~------------------------------------ 50 (177)
T 2o6r_A 10 TEIRCNSKGLTSVP-TGI--PSSATRLELESNKLQSLPHGVFDK------------------------------------ 50 (177)
T ss_dssp TEEECCSSCCSSCC-TTC--CTTCSEEECCSSCCCCCCTTTTTT------------------------------------
T ss_pred CEEEecCCCCccCC-CCC--CCCCcEEEeCCCcccEeCHHHhcC------------------------------------
Confidence 67888888887543 222 368899999999888555444443
Q ss_pred cccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccC
Q 041121 413 MPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGI 492 (574)
Q Consensus 413 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~ 492 (574)
+++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..
T Consensus 51 --------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 116 (177)
T 2o6r_A 51 --------------LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVP 116 (177)
T ss_dssp --------------CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred --------------cccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeC
Confidence 444699999999999777778899999999999999999888888999999999999999999887
Q ss_pred CCCccCCCCCCEEeccCCcCcccCCC
Q 041121 493 PSSLSPLSVLSVMDLSYNNLSGKIPT 518 (574)
Q Consensus 493 ~~~l~~l~~L~~L~Ls~N~l~~~~p~ 518 (574)
+..|..+++|+.|++++|++.+..|.
T Consensus 117 ~~~~~~l~~L~~L~l~~N~~~~~~~~ 142 (177)
T 2o6r_A 117 DGIFDRLTSLQKIWLHTNPWDCSCPR 142 (177)
T ss_dssp TTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred HHHhcCCcccCEEEecCCCeeccCcc
Confidence 77889999999999999999976663
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.2e-14 Score=142.90 Aligned_cols=323 Identities=12% Similarity=0.039 Sum_probs=170.1
Q ss_pred hcCCCCCCcEEEccCCCCCCC----CCcCCcccEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccCchhhhhcccCC
Q 041121 33 VIGKLHSLKTLTSHSCYLRPL----SNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNL 108 (574)
Q Consensus 33 ~~~~l~~L~~L~l~~n~l~~~----~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 108 (574)
+|.+|.+|+.+.+..+ ++.+ +.-+.+|+.+++..+ ++.+...+|..+.+|+.+.+..+
T Consensus 66 AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~---------------- 127 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM---------------- 127 (394)
T ss_dssp TTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT----------------
T ss_pred HhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc----------------
Confidence 6777777777766532 3322 111234444444332 33344455666666655444322
Q ss_pred CCCccccccccccccccccCcEEEccCCcccccCCC-CCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCc
Q 041121 109 SDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTD 187 (574)
Q Consensus 109 ~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 187 (574)
+..++..+|.++.. ++.. +.. ....+... |.++++|+.+.+.++. ..+...+|.++.+|+.+.+..+ ++.
T Consensus 128 ----l~~i~~~aF~~~~~-~~~~-~~~-~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~ 198 (394)
T 4fs7_A 128 ----LKSIGVEAFKGCDF-KEIT-IPE-GVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKI 198 (394)
T ss_dssp ----CCEECTTTTTTCCC-SEEE-CCT-TCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCE
T ss_pred ----eeeecceeeecccc-cccc-cCc-cccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceE
Confidence 22233335555543 2222 221 12222333 7788888888886543 3356677888888888777664 443
Q ss_pred ccCccccccCCchhhcCCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCC
Q 041121 188 LANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKL 267 (574)
Q Consensus 188 l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 267 (574)
+.... +..+..|+.+.+..+... +... +.....|+.+.+... ++...
T Consensus 199 I~~~~---------F~~~~~L~~i~~~~~~~~----------------------i~~~-~~~~~~l~~i~ip~~-~~~i~ 245 (394)
T 4fs7_A 199 IRDYC---------FAECILLENMEFPNSLYY----------------------LGDF-ALSKTGVKNIIIPDS-FTELG 245 (394)
T ss_dssp ECTTT---------TTTCTTCCBCCCCTTCCE----------------------ECTT-TTTTCCCCEEEECTT-CCEEC
T ss_pred eCchh---------hccccccceeecCCCceE----------------------eehh-hcccCCCceEEECCC-ceecc
Confidence 33322 344555555444332211 1111 112344555555432 22233
Q ss_pred CcchhcCCCCcEEEccCcccccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCC
Q 041121 268 PDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTP 347 (574)
Q Consensus 268 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~ 347 (574)
..+|.++..++.+.+..+... .....|..+..+ +.+......+ ..
T Consensus 246 ~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l-------------------------------~~~~~~~~~i---~~ 290 (394)
T 4fs7_A 246 KSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGL-------------------------------KKVIYGSVIV---PE 290 (394)
T ss_dssp SSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTC-------------------------------CEEEECSSEE---CT
T ss_pred cccccccccceeEEcCCCcce-eecccccccccc-------------------------------ceeccCceee---cc
Confidence 445556666666666554332 334444444444 3333333322 22
Q ss_pred hhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCccccccc
Q 041121 348 FQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTL 427 (574)
Q Consensus 348 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 427 (574)
.+|..+.+|+.+.+..+ ++.+...+|.++.+|
T Consensus 291 ~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L----------------------------------------------- 322 (394)
T 4fs7_A 291 KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSL----------------------------------------------- 322 (394)
T ss_dssp TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTC-----------------------------------------------
T ss_pred ccccccccccccccccc-cceechhhhcCCCCC-----------------------------------------------
Confidence 35666777777777644 443444556555554
Q ss_pred CcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEE
Q 041121 428 GLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVM 505 (574)
Q Consensus 428 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L 505 (574)
+.+++..+ ++.+...+|.++.+|+.+++..+ ++.+...+|.++++|+.+++..+ +. ....+|.++++|+.+
T Consensus 323 ---~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 323 ---VSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp ---CEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred ---CEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 55666433 55455677888888888888766 66667778888888888888755 33 223567777777654
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.58 E-value=7e-15 Score=129.60 Aligned_cols=61 Identities=28% Similarity=0.297 Sum_probs=38.6
Q ss_pred ccEEEccCCcCCCCCc-HhhhhcCCCCEEeCCCCcCcccCC---ccccCCCCCCEEeCCCCcccc
Q 041121 430 IKSLELSSNKLNGAVP-EEIMDLVGLVALNLSRNHLTGQNS---PKIGQLKSLDFLDLSRNQLVG 490 (574)
Q Consensus 430 L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~L~~N~i~~ 490 (574)
|+.|++++|.+++... ..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+..
T Consensus 97 L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 97 LTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp CCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred CCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 4666666666663221 556666777777777777765544 466667777777777776663
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.58 E-value=5.5e-15 Score=127.42 Aligned_cols=125 Identities=22% Similarity=0.225 Sum_probs=96.3
Q ss_pred ceEEecCceec-cCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCc
Q 041121 333 RFVRLKSNKFH-GKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDK 411 (574)
Q Consensus 333 ~~l~L~~n~~~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (574)
+.+++++|.+. +.++..+..+++|++|++++|.+++. ..+
T Consensus 20 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~------------------------------------- 60 (149)
T 2je0_A 20 KELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANL------------------------------------- 60 (149)
T ss_dssp SEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTC-------------------------------------
T ss_pred eEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhh-------------------------------------
Confidence 66777777776 55666666777777777777776643 222
Q ss_pred ccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCccc-CCccccCCCCCCEEeCCCCcccc
Q 041121 412 VMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQ-NSPKIGQLKSLDFLDLSRNQLVG 490 (574)
Q Consensus 412 ~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~i~~ 490 (574)
..+++|++|++++|.+++.+|..+..+++|++|++++|++++. .+..+..+++|++|++++|++++
T Consensus 61 -------------~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~ 127 (149)
T 2je0_A 61 -------------PKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN 127 (149)
T ss_dssp -------------CCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG
T ss_pred -------------hcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc
Confidence 2355578999999999876888888899999999999999864 34778889999999999999987
Q ss_pred cCC---CCccCCCCCCEEeccC
Q 041121 491 GIP---SSLSPLSVLSVMDLSY 509 (574)
Q Consensus 491 ~~~---~~l~~l~~L~~L~Ls~ 509 (574)
..+ ..+..+++|+.|++++
T Consensus 128 ~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 128 LNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp STTHHHHHHHHCTTCCEETTBC
T ss_pred hHHHHHHHHHHCCCcccccCCC
Confidence 655 5788889999998864
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-14 Score=128.28 Aligned_cols=107 Identities=25% Similarity=0.277 Sum_probs=75.7
Q ss_pred cEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCC
Q 041121 431 KSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYN 510 (574)
Q Consensus 431 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N 510 (574)
+.+++++|.++ .+|..+ .++|++|+|++|+|++..+..|.++++|++|+|++|+|+++.+..|..+++|+.|+|++|
T Consensus 12 ~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 67777777776 455444 267777777777777777777777777777777777777666667777777777777777
Q ss_pred cCcccCCCc-chhcccCcccccCCCCCCCCC
Q 041121 511 NLSGKIPTG-TQLQSFNGSVYAGNPELCGLP 540 (574)
Q Consensus 511 ~l~~~~p~~-~~~~~l~~~~l~~Np~~c~~~ 540 (574)
+|++..|.. ..+..++.+++++|||.|+|+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 777433332 356677777777777777775
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.54 E-value=1.5e-14 Score=124.69 Aligned_cols=129 Identities=26% Similarity=0.247 Sum_probs=82.4
Q ss_pred CCCccEEECCCCCCC-CCCCcchhcCCCCcEEEccCcccccCCCcccccccCccccccccccccCccceeeecccccccc
Q 041121 250 GSKLTYIDLSSNLLS-GKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFE 328 (574)
Q Consensus 250 ~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~ 328 (574)
.+++++|++++|.++ +..|..+..+++|+.|++++|.+++.
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-------------------------------------- 57 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-------------------------------------- 57 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--------------------------------------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--------------------------------------
Confidence 356777777777776 55666667777777777777766533
Q ss_pred ccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccc
Q 041121 329 SWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSF 408 (574)
Q Consensus 329 ~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 408 (574)
..+..+++|++|++++|.+++.+|..+..
T Consensus 58 -------------------~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-------------------------------- 86 (149)
T 2je0_A 58 -------------------ANLPKLNKLKKLELSDNRVSGGLEVLAEK-------------------------------- 86 (149)
T ss_dssp -------------------TTCCCCTTCCEEECCSSCCCSCTHHHHHH--------------------------------
T ss_pred -------------------hhhhcCCCCCEEECCCCcccchHHHHhhh--------------------------------
Confidence 23445566777777777766444433322
Q ss_pred cCcccccccCCCcccccccCcccEEEccCCcCCCC-CcHhhhhcCCCCEEeCCCCcCcccCC---ccccCCCCCCEEeCC
Q 041121 409 QDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGA-VPEEIMDLVGLVALNLSRNHLTGQNS---PKIGQLKSLDFLDLS 484 (574)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~L~ 484 (574)
+++|++|++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 87 ------------------l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 87 ------------------CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ------------------CTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ------------------CCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 33346777777777642 23566777777777777777776555 466777777777765
Q ss_pred C
Q 041121 485 R 485 (574)
Q Consensus 485 ~ 485 (574)
+
T Consensus 149 d 149 (149)
T 2je0_A 149 D 149 (149)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.5e-14 Score=125.53 Aligned_cols=107 Identities=22% Similarity=0.241 Sum_probs=72.5
Q ss_pred cEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCC
Q 041121 431 KSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYN 510 (574)
Q Consensus 431 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N 510 (574)
+.+++++|+++ .+|..+. ++|++|+|++|+|++..|..|.++++|++|+|++|+|+++.+..|..+++|+.|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 56777777775 5555443 66777777777777666777777777777777777777666666677777777777777
Q ss_pred cCcccCCCc-chhcccCcccccCCCCCCCCC
Q 041121 511 NLSGKIPTG-TQLQSFNGSVYAGNPELCGLP 540 (574)
Q Consensus 511 ~l~~~~p~~-~~~~~l~~~~l~~Np~~c~~~ 540 (574)
+|++..+.. ..++.++.+++++|||.|+|+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 777333322 346667777777777777765
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.51 E-value=2.2e-14 Score=127.45 Aligned_cols=131 Identities=17% Similarity=0.140 Sum_probs=87.5
Q ss_pred cCCCCCCcEEEccCCCCCCCCCc---CCcccEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccCchhhhhcccCCCC
Q 041121 34 IGKLHSLKTLTSHSCYLRPLSNI---SSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSD 110 (574)
Q Consensus 34 ~~~l~~L~~L~l~~n~l~~~~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 110 (574)
+..+.+|++|++++|+++.+..+ .++|++|++++|.+++. ..+..+++|++|++++|.+++..+.
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~---------- 82 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEG---------- 82 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSC----------
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcc----------
Confidence 44455555555555555544222 13566666666666643 5677888888888888887743222
Q ss_pred CccccccccccccccccCcEEEccCCcccccCC--CCCCCCCCCEEEccCcccccccch----hhhccCCCCEEEccCCC
Q 041121 111 NKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIP--DLGGFSSMKRLYLSDNLLNGTINK----SIGQIFKLEITCLSQNS 184 (574)
Q Consensus 111 n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~--~l~~l~~L~~L~L~~n~i~~~~~~----~~~~l~~L~~L~Ls~N~ 184 (574)
.|..+++ |++|++++|++..... .+..+++|++|++++|.+.. .|. .+..+++|++|++++|.
T Consensus 83 ---------~~~~l~~-L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 83 ---------LDQALPD-LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp ---------HHHHCTT-CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECC
T ss_pred ---------hhhcCCC-CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCC
Confidence 3456676 8888888888876554 37778888888888888873 344 47788888888888887
Q ss_pred CCc
Q 041121 185 LTD 187 (574)
Q Consensus 185 l~~ 187 (574)
+.+
T Consensus 152 ~~~ 154 (176)
T 1a9n_A 152 LKE 154 (176)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.50 E-value=7.6e-14 Score=122.95 Aligned_cols=91 Identities=24% Similarity=0.191 Sum_probs=83.6
Q ss_pred cccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEecc
Q 041121 429 LIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLS 508 (574)
Q Consensus 429 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls 508 (574)
+|+.|+|++|.|++..|..|.++++|++|+|++|+|+++.+..|.++++|++|+|++|+|++..++.|..+++|+.|+|+
T Consensus 31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 110 (170)
T 3g39_A 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL 110 (170)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeC
Confidence 36899999999998889999999999999999999998888889999999999999999998888889999999999999
Q ss_pred CCcCcccCCCc
Q 041121 509 YNNLSGKIPTG 519 (574)
Q Consensus 509 ~N~l~~~~p~~ 519 (574)
+|++++..+..
T Consensus 111 ~N~~~c~c~~l 121 (170)
T 3g39_A 111 NNPWDCACSDI 121 (170)
T ss_dssp SSCBCTTBGGG
T ss_pred CCCCCCCchhH
Confidence 99999555433
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.48 E-value=7.7e-14 Score=123.84 Aligned_cols=86 Identities=23% Similarity=0.264 Sum_probs=70.0
Q ss_pred ccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCc--cccCCCCCCEEeCCCCcccccCCC----CccCC
Q 041121 426 TLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSP--KIGQLKSLDFLDLSRNQLVGGIPS----SLSPL 499 (574)
Q Consensus 426 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~L~~N~i~~~~~~----~l~~l 499 (574)
.+++|+.|++++|.+++..+..|..+++|++|+|++|+++. +|. .+..+++|+.|++++|++.. .|. .+..+
T Consensus 62 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l 139 (176)
T 1a9n_A 62 LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKV 139 (176)
T ss_dssp CCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHC
T ss_pred cCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHC
Confidence 45567899999999986655667889999999999999974 444 78889999999999999984 455 38888
Q ss_pred CCCCEEeccCCcCc
Q 041121 500 SVLSVMDLSYNNLS 513 (574)
Q Consensus 500 ~~L~~L~Ls~N~l~ 513 (574)
++|+.||+++|.+.
T Consensus 140 ~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 140 PQVRVLDFQKVKLK 153 (176)
T ss_dssp TTCSEETTEECCHH
T ss_pred CccceeCCCcCCHH
Confidence 99999999999876
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.5e-15 Score=137.88 Aligned_cols=82 Identities=26% Similarity=0.308 Sum_probs=58.5
Q ss_pred CcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCC-ccccCCCCCCEEeCCCCcccccCCCC----------c
Q 041121 428 GLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNS-PKIGQLKSLDFLDLSRNQLVGGIPSS----------L 496 (574)
Q Consensus 428 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~i~~~~~~~----------l 496 (574)
++|++|++++|.+++ +| .+..+++|++|++++|++++..+ ..+..+++|++|++++|++.+..|.. +
T Consensus 93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~ 170 (198)
T 1ds9_A 93 DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV 170 (198)
T ss_dssp HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHH
T ss_pred CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHH
Confidence 445778888888874 44 57778888888888888875432 46777888888888888887665543 6
Q ss_pred cCCCCCCEEeccCCcCc
Q 041121 497 SPLSVLSVMDLSYNNLS 513 (574)
Q Consensus 497 ~~l~~L~~L~Ls~N~l~ 513 (574)
..+++|+.|| +|.++
T Consensus 171 ~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 171 KRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHCSSCSEEC--CGGGT
T ss_pred HhCCCcEEEC--CcccC
Confidence 7777888776 66665
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.45 E-value=3e-13 Score=119.53 Aligned_cols=88 Identities=25% Similarity=0.240 Sum_probs=80.5
Q ss_pred cccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEecc
Q 041121 429 LIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLS 508 (574)
Q Consensus 429 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls 508 (574)
+|++|+|++|.|++..|..|.++++|++|+|++|+|+++.+..|.++++|++|+|++|+|++..+..|..+++|+.|+|+
T Consensus 34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~ 113 (174)
T 2r9u_A 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY 113 (174)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeC
Confidence 36899999999998888999999999999999999998888888999999999999999998777789999999999999
Q ss_pred CCcCcccC
Q 041121 509 YNNLSGKI 516 (574)
Q Consensus 509 ~N~l~~~~ 516 (574)
+|++.+..
T Consensus 114 ~N~~~c~~ 121 (174)
T 2r9u_A 114 NNPWDCEC 121 (174)
T ss_dssp SSCBCTTB
T ss_pred CCCccccc
Confidence 99998433
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-11 Score=125.11 Aligned_cols=333 Identities=11% Similarity=0.068 Sum_probs=162.1
Q ss_pred cccccccccccccccCcEEEccCCcccccCCC-CCCCCCCCEEEccCcc---cccccchhhhccCCCCEEEccCCCCCcc
Q 041121 113 LAIIQNMSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNL---LNGTINKSIGQIFKLEITCLSQNSLTDL 188 (574)
Q Consensus 113 l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~Ls~N~l~~l 188 (574)
++.|++.+|.++...|+.+.+..+ ++.+... |.++++|+.+.+..|. ++.+...+|.++.+|+.+.+..+ ++.+
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I 128 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEI 128 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEE
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-ccee
Confidence 344666677766433777777643 5545555 7777888888777653 55555667777777776666543 3333
Q ss_pred cCccccccCCchhhcCCCCCCeEeccCCccc--CCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCC
Q 041121 189 ANIQIKGKLPDLSSRFGTSNPGIDISSNHFE--GPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGK 266 (574)
Q Consensus 189 ~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~ 266 (574)
+. ..+..+.+|+.+.+..+--. .........|+.+.+..+ +..+...+|.. ..|+.+.+..+-.. .
T Consensus 129 ~~---------~aF~~c~~L~~i~lp~~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i 196 (394)
T 4gt6_A 129 DS---------EAFHHCEELDTVTIPEGVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-I 196 (394)
T ss_dssp CT---------TTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-E
T ss_pred hh---------hhhhhhcccccccccceeeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-c
Confidence 22 22455566666666432111 111111445556665543 44455555533 45666666544322 4
Q ss_pred CCcchhcCCCCcEEEccCcccccCCCcccccccCccccccccccccCccceeeeccccccccccc-cceEEecCceeccC
Q 041121 267 LPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWE-ERFVRLKSNKFHGK 345 (574)
Q Consensus 267 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~l~L~~n~~~~~ 345 (574)
...+|.++..++......+.........+....... ..... .+... ...+.+. +.+..+
T Consensus 197 ~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~------~~~~~~~~~~~ip-~~v~~i 256 (394)
T 4gt6_A 197 GTNAFSECFALSTITSDSESYPAIDNVLYEKSANGD-------------YALIR------YPSQREDPAFKIP-NGVARI 256 (394)
T ss_dssp CTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSC-------------EEEEE------CCTTCCCSEEECC-TTEEEE
T ss_pred ccchhhhccccceecccccccccccceeeccccccc-------------ccccc------cccccccceEEcC-CcceEc
Confidence 455666666666666554443311111111000000 00000 00000 0222222 223334
Q ss_pred CChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCccccc
Q 041121 346 TPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRS 425 (574)
Q Consensus 346 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (574)
...+|..+..|+.+.+..+... +...+|.++..|+.+.+...- .......|.
T Consensus 257 ~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~~i---------------------------~~I~~~aF~ 308 (394)
T 4gt6_A 257 ETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSSRI---------------------------TELPESVFA 308 (394)
T ss_dssp CTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCTTC---------------------------CEECTTTTT
T ss_pred ccceeeecccccEEecccccce-ecCcccccccccccccCCCcc---------------------------cccCceeec
Confidence 4556777777888777655443 555666666666554432110 011222344
Q ss_pred ccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEE
Q 041121 426 TLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVM 505 (574)
Q Consensus 426 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L 505 (574)
++.+|+.+++..+ ++.+...+|.+|.+|+.+.|..+ ++.+...+|.++++|+.+++.++.... ..+.....|+.+
T Consensus 309 ~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i 383 (394)
T 4gt6_A 309 GCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNL 383 (394)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC---
T ss_pred CCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEE
Confidence 5555666666543 44344556666666666666543 444555566666666666666654432 234555556666
Q ss_pred eccCCcC
Q 041121 506 DLSYNNL 512 (574)
Q Consensus 506 ~Ls~N~l 512 (574)
.+..|.+
T Consensus 384 ~i~~~~~ 390 (394)
T 4gt6_A 384 PVAPGSI 390 (394)
T ss_dssp -------
T ss_pred EeCCCCE
Confidence 5555443
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.40 E-value=3.5e-13 Score=133.82 Aligned_cols=107 Identities=22% Similarity=0.265 Sum_probs=71.7
Q ss_pred EEEccCC-cCCCCCcHhhhhcCCCCEEeCCC-CcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccC
Q 041121 432 SLELSSN-KLNGAVPEEIMDLVGLVALNLSR-NHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSY 509 (574)
Q Consensus 432 ~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~ 509 (574)
.++++++ +++ .+|. +..+++|++|+|++ |.|+++.+..|.++++|+.|+|++|+|+++.|..|.++++|+.|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4566666 666 4555 66777777777775 777766666777777777777777777777777777777777777777
Q ss_pred CcCcccCCCcchhcccCcccccCCCCCCCCC
Q 041121 510 NNLSGKIPTGTQLQSFNGSVYAGNPELCGLP 540 (574)
Q Consensus 510 N~l~~~~p~~~~~~~l~~~~l~~Np~~c~~~ 540 (574)
|+|++..|..+....++.+++.+|++.|+|.
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNPLHCSCA 120 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred CccceeCHHHcccCCceEEEeeCCCccCCCc
Confidence 7777333333333336667777777777775
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-14 Score=131.52 Aligned_cols=152 Identities=22% Similarity=0.215 Sum_probs=107.0
Q ss_pred CCccEEECCCCCCCCCCCc------chhcCCCCcEEEccCcccccCCCcccccccCccccccccccccCccceeeecccc
Q 041121 251 SKLTYIDLSSNLLSGKLPD------CWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTT 324 (574)
Q Consensus 251 ~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~ 324 (574)
..++.++++.+.+.+..|. .+..+++|++|++++|.+++ +| .+..+++|
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L----------------------- 72 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENL----------------------- 72 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTC-----------------------
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCC-----------------------
Confidence 3444444444444444443 77788888888888888875 45 66777777
Q ss_pred ccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccc
Q 041121 325 QTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVH 404 (574)
Q Consensus 325 ~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~ 404 (574)
+.+++++|.+. .+|..+..+++|++|++++|++++ +| .+..
T Consensus 73 --------~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~---------------------------- 113 (198)
T 1ds9_A 73 --------RILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEK---------------------------- 113 (198)
T ss_dssp --------CEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHH----------------------------
T ss_pred --------CEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-cccc----------------------------
Confidence 77888888877 455566667788888888888874 22 2333
Q ss_pred cccccCcccccccCCCcccccccCcccEEEccCCcCCCCCc-HhhhhcCCCCEEeCCCCcCcccCCc----------ccc
Q 041121 405 HYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVP-EEIMDLVGLVALNLSRNHLTGQNSP----------KIG 473 (574)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~----------~~~ 473 (574)
+++|+.|++++|.+++..+ ..+..+++|++|++++|.+++..|. .+.
T Consensus 114 ----------------------l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~ 171 (198)
T 1ds9_A 114 ----------------------LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK 171 (198)
T ss_dssp ----------------------HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHH
T ss_pred ----------------------CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHH
Confidence 4446889999999874332 4788899999999999998765443 377
Q ss_pred CCCCCCEEeCCCCcccc
Q 041121 474 QLKSLDFLDLSRNQLVG 490 (574)
Q Consensus 474 ~l~~L~~L~L~~N~i~~ 490 (574)
.+++|+.|| +|.++.
T Consensus 172 ~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 172 RLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HCSSCSEEC--CGGGTT
T ss_pred hCCCcEEEC--CcccCH
Confidence 889999987 677763
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.36 E-value=9.6e-11 Score=118.18 Aligned_cols=59 Identities=10% Similarity=0.099 Sum_probs=34.6
Q ss_pred cCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCccc
Q 041121 427 LGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLV 489 (574)
Q Consensus 427 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~ 489 (574)
+.+|+.+.+..+ ++.+...+|.+|.+|+.+++.++.... ..+....+|+.+.+..|.+.
T Consensus 333 C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~~ 391 (394)
T 4gt6_A 333 CEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSID 391 (394)
T ss_dssp CTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC-----------
T ss_pred CCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCEE
Confidence 344577777544 665667789999999999998886542 46677788888888777554
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.2e-13 Score=134.47 Aligned_cols=162 Identities=20% Similarity=0.179 Sum_probs=95.6
Q ss_pred CCCCcEEECCCCCCCCC--CchhhhcCC-CCCCcEEEccCCCCCCC-----CCcCCcccEEEccCCcCCCCCCccc----
Q 041121 11 LHSLRYLNLEENNLANC--SDWFQVIGK-LHSLKTLTSHSCYLRPL-----SNISSNFVSIDLSFNQLQGSIPDSS---- 78 (574)
Q Consensus 11 l~~L~~L~Ls~n~i~~~--~~~~~~~~~-l~~L~~L~l~~n~l~~~-----~~~~~~L~~L~Ls~n~i~~~~~~~~---- 78 (574)
++.|++|+|++|.++.. ..+...+.. .++|++|+|++|.++.. ....++|++|+|++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 35678888888887765 223333443 36788888888877653 1112467777777777764433333
Q ss_pred -cCCCCCCEEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccccC----CC-CCCCCCCC
Q 041121 79 -QHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPI----PD-LGGFSSMK 152 (574)
Q Consensus 79 -~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~----~~-l~~l~~L~ 152 (574)
...++|++|+|++|.++......+.. ++..++. |++|+|++|.+++.. .. +...++|+
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~---------------~L~~~~~-L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~ 214 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLME---------------GLAGNTS-VTHLSLLHTGLGDEGLELLAAQLDRNRQLQ 214 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHH---------------HHHTCSS-CCEEECTTSSCHHHHHHHHHHHGGGCSCCC
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHH---------------HHhcCCC-cCEEeCCCCCCCcHHHHHHHHHHhcCCCcC
Confidence 24567777777777765433332222 3344555 777777777766421 22 45556677
Q ss_pred EEEccCcccccc----cchhhhccCCCCEEEccCCCCCcc
Q 041121 153 RLYLSDNLLNGT----INKSIGQIFKLEITCLSQNSLTDL 188 (574)
Q Consensus 153 ~L~L~~n~i~~~----~~~~~~~l~~L~~L~Ls~N~l~~l 188 (574)
+|+|++|.|+.. ++.++..++.|++|+|++|.|++.
T Consensus 215 ~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 215 ELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp EEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred eEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 777777776543 233444556677777777766543
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.28 E-value=8.7e-12 Score=123.68 Aligned_cols=85 Identities=22% Similarity=0.130 Sum_probs=62.5
Q ss_pred cccEEEccC-CcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEec
Q 041121 429 LIKSLELSS-NKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDL 507 (574)
Q Consensus 429 ~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~L 507 (574)
+|+.|+|++ |.|++..+..|.++++|++|+|++|+|+++.+..|.++++|+.|+|++|+|++..+..|..++ |+.|+|
T Consensus 32 ~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l 110 (347)
T 2ifg_A 32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVL 110 (347)
T ss_dssp CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEEC
T ss_pred CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEe
Confidence 357777775 777766667777777777777777777777777777777777777777777766666666655 777777
Q ss_pred cCCcCcc
Q 041121 508 SYNNLSG 514 (574)
Q Consensus 508 s~N~l~~ 514 (574)
++|++.+
T Consensus 111 ~~N~~~c 117 (347)
T 2ifg_A 111 SGNPLHC 117 (347)
T ss_dssp CSSCCCC
T ss_pred eCCCccC
Confidence 7777763
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.3e-13 Score=134.36 Aligned_cols=186 Identities=15% Similarity=0.081 Sum_probs=93.8
Q ss_pred CcccEEEccCCcCCCCCCccc----c-CCCCCCEEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEE
Q 041121 58 SNFVSIDLSFNQLQGSIPDSS----Q-HMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLH 132 (574)
Q Consensus 58 ~~L~~L~Ls~n~i~~~~~~~~----~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~ 132 (574)
+.|++|++++|.++......+ . ..++|++|+|++|.++......+ ...+++ |++|+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l------------------~~~L~~-L~~L~ 132 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTL------------------LPVFLR-ARKLG 132 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHT------------------HHHHHT-EEEEE
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHH------------------HHHHHh-ccHhh
Confidence 456667777766654322222 2 22567777777776653322221 122344 77777
Q ss_pred ccCCcccccCCC-C-----CCCCCCCEEEccCcccccc----cchhhhccCCCCEEEccCCCCCcccCccccccCCchhh
Q 041121 133 LEVNHFTGPIPD-L-----GGFSSMKRLYLSDNLLNGT----INKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSS 202 (574)
Q Consensus 133 L~~n~l~~~~~~-l-----~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~ 202 (574)
|++|.++..... + ...++|++|+|++|.|+.. ++..+..+++|++|+|++|.|++.....+... +
T Consensus 133 Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~-----L 207 (372)
T 3un9_A 133 LQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ-----L 207 (372)
T ss_dssp CCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH-----G
T ss_pred cCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH-----H
Confidence 777766542221 2 2356677777777776542 33344566677777777776654322211111 1
Q ss_pred cCCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCCccccccccc----ccCCCCccEEECCCCCCCCCCCcchhcCC---
Q 041121 203 RFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLC----SISGSKLTYIDLSSNLLSGKLPDCWWMFD--- 275 (574)
Q Consensus 203 ~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~----~~~~~~L~~L~L~~n~l~~~~~~~~~~l~--- 275 (574)
.. .++|++|+|++|.|+...... +...++|++|+|++|.|+......+..+.
T Consensus 208 ~~---------------------~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~ 266 (372)
T 3un9_A 208 DR---------------------NRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAA 266 (372)
T ss_dssp GG---------------------CSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC---
T ss_pred hc---------------------CCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCC
Confidence 11 234555666666555433222 22456777777777777643333333321
Q ss_pred --CCcEEE--ccCcccc
Q 041121 276 --SLVILD--LGNNSFS 288 (574)
Q Consensus 276 --~L~~L~--L~~N~l~ 288 (574)
.|+.+. +..+.+.
T Consensus 267 ~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 267 EGGARVVVSLTEGTAVS 283 (372)
T ss_dssp ---CEEECCCC----CH
T ss_pred CccchhhHhhhcCCccC
Confidence 155555 4444443
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.1e-08 Score=102.45 Aligned_cols=125 Identities=13% Similarity=0.071 Sum_probs=63.6
Q ss_pred CCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccc
Q 041121 345 KTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYR 424 (574)
Q Consensus 345 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (574)
+...+|..+..|+.+.+..+ ++.+...+|.++..++.+.+..+- .......|
T Consensus 231 i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~i---------------------------~~i~~~aF 282 (379)
T 4h09_A 231 LGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAKV---------------------------KTVPYLLC 282 (379)
T ss_dssp ECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCCC---------------------------SEECTTTT
T ss_pred EccccccCCccceEEEcCCC-ccEeCccccceeehhccccccccc---------------------------eecccccc
Confidence 44556677777777777654 443445566665555433321110 00111223
Q ss_pred cccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCC
Q 041121 425 STLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPL 499 (574)
Q Consensus 425 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l 499 (574)
.++.+|+.+.+.++.++.+...+|.++.+|+.+.|..+ ++.+...+|.++.+|+.+.+..+ ++.+...+|.++
T Consensus 283 ~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 283 SGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp TTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred ccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 34444555555555555444455566666666666433 44444555555566666555443 443444555544
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=99.08 E-value=9.1e-09 Score=103.12 Aligned_cols=135 Identities=10% Similarity=0.048 Sum_probs=99.0
Q ss_pred CChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCccccc
Q 041121 346 TPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRS 425 (574)
Q Consensus 346 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (574)
....+..+..++.+.+..+ +..+...+|.++..|+.+.+..+- .......|.
T Consensus 209 ~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~v---------------------------~~I~~~aF~ 260 (379)
T 4h09_A 209 TAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKNV---------------------------TSIGSFLLQ 260 (379)
T ss_dssp CTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTTC---------------------------CEECTTTTT
T ss_pred eecccccccccceeeeccc-eeEEccccccCCccceEEEcCCCc---------------------------cEeCccccc
Confidence 3456667778888887655 333556677777777665543321 112233456
Q ss_pred ccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEE
Q 041121 426 TLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVM 505 (574)
Q Consensus 426 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L 505 (574)
.+.+|+.+.+..+ ++.....+|.++.+|+.+.+.++.++.+...+|.++.+|+.+.+..+ ++.+...+|.++.+|+.+
T Consensus 261 ~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i 338 (379)
T 4h09_A 261 NCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTI 338 (379)
T ss_dssp TCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCC
T ss_pred eeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEE
Confidence 6777888888654 55466678999999999999999998788889999999999999765 776778899999999998
Q ss_pred eccCC
Q 041121 506 DLSYN 510 (574)
Q Consensus 506 ~Ls~N 510 (574)
.+..+
T Consensus 339 ~ip~~ 343 (379)
T 4h09_A 339 SYPKS 343 (379)
T ss_dssp CCCTT
T ss_pred EECCc
Confidence 87654
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.4e-09 Score=107.13 Aligned_cols=68 Identities=18% Similarity=0.078 Sum_probs=35.0
Q ss_pred CCCCCCEEEccCcccccccchhhh---ccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCccc
Q 041121 147 GFSSMKRLYLSDNLLNGTINKSIG---QIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFE 219 (574)
Q Consensus 147 ~l~~L~~L~L~~n~i~~~~~~~~~---~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~ 219 (574)
.+++|++|++++|.+....+..+. .+++|++|+|+.|.+++.....+... ...+++|+.|+++.|.++
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~-----L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDH-----VDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTT-----HHHHTTCSEEECCSBBCC
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhh-----cccCCcceEEECCCCcCC
Confidence 356666666666666543333332 35566666666666554221111110 133456666666666655
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.77 E-value=3.1e-09 Score=94.57 Aligned_cols=120 Identities=13% Similarity=0.065 Sum_probs=82.0
Q ss_pred hhhhhcCCCCCcEEECCCC-CCCCC--CchhhhcCCCCCCcEEEccCCCCCCC--------CCcCCcccEEEccCCcCCC
Q 041121 4 LLMRSLRLHSLRYLNLEEN-NLANC--SDWFQVIGKLHSLKTLTSHSCYLRPL--------SNISSNFVSIDLSFNQLQG 72 (574)
Q Consensus 4 l~~~l~~l~~L~~L~Ls~n-~i~~~--~~~~~~~~~l~~L~~L~l~~n~l~~~--------~~~~~~L~~L~Ls~n~i~~ 72 (574)
+.+.+...+.|++|+|++| .|.+. ..+.+++...++|++|+|++|.|.+. ....+.|++|+|++|.|..
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 5567788899999999998 88765 44556778888999999999988764 1112578888888888774
Q ss_pred C----CCccccCCCCCCEEEc--cCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCccc
Q 041121 73 S----IPDSSQHMVYLEHLSL--MFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFT 139 (574)
Q Consensus 73 ~----~~~~~~~l~~L~~L~L--~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~ 139 (574)
. +...+...+.|++|+| ++|.+.......+.. .+...+. |++|++++|.+.
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~---------------~L~~n~~-L~~L~L~~n~i~ 164 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN---------------MLEKNTT-LLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH---------------HHHHCSS-CCEEECCCSSHH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHH---------------HHHhCCC-cCEEeccCCCCC
Confidence 3 4556667777888888 777776443333332 3333444 666666666554
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.71 E-value=7.9e-09 Score=101.87 Aligned_cols=176 Identities=12% Similarity=0.028 Sum_probs=91.7
Q ss_pred ccccCCCCCCEEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccccCCCCCCCCCCCEEE
Q 041121 76 DSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLY 155 (574)
Q Consensus 76 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~ 155 (574)
.+...+++|+.|.+............. ....++. .+..+|+ |+.|.+++|.-... +.+. +++|++|+
T Consensus 133 ~s~~~l~~L~~L~l~~~~~e~~~is~~---------~~~~L~~-ll~~~P~-L~~L~L~g~~~l~l-~~~~-~~~L~~L~ 199 (362)
T 2ra8_A 133 ENKEKFAHFEGLFWGDIDFEEQEISWI---------EQVDLSP-VLDAMPL-LNNLKIKGTNNLSI-GKKP-RPNLKSLE 199 (362)
T ss_dssp TTHHHHTTCSEEEECCCCTTTCCGGGC---------BCCBCHH-HHHTCTT-CCEEEEECCBTCBC-CSCB-CTTCSEEE
T ss_pred HhhhhcchhhheeecCcchhhcccccc---------cccCHHH-HHhcCCC-CcEEEEeCCCCcee-cccc-CCCCcEEE
Confidence 345567899999887643321000000 0011222 4556787 99999988732212 2243 78999999
Q ss_pred ccCcccccccchhhh--ccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCC------CCCCC
Q 041121 156 LSDNLLNGTINKSIG--QIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPI------PPLPS 227 (574)
Q Consensus 156 L~~n~i~~~~~~~~~--~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~------~~~~~ 227 (574)
+..+.+.......+. .+++|+.|+|+.+.-.......+...-+......+++|+.|++.+|.+.... ...++
T Consensus 200 L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~ 279 (362)
T 2ra8_A 200 IISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILP 279 (362)
T ss_dssp EECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGG
T ss_pred EecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCC
Confidence 999888755555554 6899999998632100000000100001110123566666666666654211 01245
Q ss_pred CCcEEEcCCCcccccccccc----cCCCCccEEECCCCCCC
Q 041121 228 NSSFLNLSKNRFSRSISLCS----ISGSKLTYIDLSSNLLS 264 (574)
Q Consensus 228 ~L~~L~L~~n~i~~~~~~~~----~~~~~L~~L~L~~n~l~ 264 (574)
+|+.|+|+.|.+.......+ ..+++|+.|++++|.|+
T Consensus 280 ~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 280 QLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 56666666666554322111 23456666666666554
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.57 E-value=1.2e-08 Score=90.63 Aligned_cols=124 Identities=12% Similarity=0.120 Sum_probs=72.5
Q ss_pred hhhcCCCCCCcEEEccCC-CCCCCCCcCCcccEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccCchhhhhcccCCC
Q 041121 31 FQVIGKLHSLKTLTSHSC-YLRPLSNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLS 109 (574)
Q Consensus 31 ~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 109 (574)
.+.+...+.|++|+|++| .+..... ..+...+...++|++|+|++|.+.......+..
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~----------------~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~----- 87 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTL----------------KACAEALKTNTYVKKFSIVGTRSNDPVAFALAE----- 87 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHH----------------HHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHH-----
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHH----------------HHHHHHHHhCCCcCEEECcCCCCChHHHHHHHH-----
Confidence 345666677777766666 5543200 013344556667777777777766433333332
Q ss_pred CCccccccccccccccccCcEEEccCCccccc-----CCCCCCCCCCCEEEc--cCcccccc----cchhhhccCCCCEE
Q 041121 110 DNKLAIIQNMSSGCLKNSLESLHLEVNHFTGP-----IPDLGGFSSMKRLYL--SDNLLNGT----INKSIGQIFKLEIT 178 (574)
Q Consensus 110 ~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~-----~~~l~~l~~L~~L~L--~~n~i~~~----~~~~~~~l~~L~~L 178 (574)
.+...+. |++|+|++|.+... ...+...+.|++|+| ++|.|... +...+...+.|++|
T Consensus 88 ----------~L~~n~~-L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L 156 (185)
T 1io0_A 88 ----------MLKVNNT-LKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKF 156 (185)
T ss_dssp ----------HHHHCSS-CCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEE
T ss_pred ----------HHHhCCC-cCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEE
Confidence 3333444 77777777776642 122555667777777 66777643 34455566778888
Q ss_pred EccCCCCC
Q 041121 179 CLSQNSLT 186 (574)
Q Consensus 179 ~Ls~N~l~ 186 (574)
++++|.+.
T Consensus 157 ~L~~n~i~ 164 (185)
T 1io0_A 157 GYHFTQQG 164 (185)
T ss_dssp ECCCSSHH
T ss_pred eccCCCCC
Confidence 88777664
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.34 E-value=3.7e-07 Score=85.21 Aligned_cols=65 Identities=29% Similarity=0.336 Sum_probs=27.9
Q ss_pred cCCCCEEeCCCCcCccc--CCccccCCCCCCEEeCCCCcccccCCCCccCCC--CCCEEeccCCcCcccCC
Q 041121 451 LVGLVALNLSRNHLTGQ--NSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLS--VLSVMDLSYNNLSGKIP 517 (574)
Q Consensus 451 l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~--~L~~L~Ls~N~l~~~~p 517 (574)
+++|++|+|++|+|+++ ++..+..+++|+.|+|++|+|++. ..+..+. +|+.|+|++|++++.+|
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 44444444444444432 223333444444444444444432 1122222 45555555555544444
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.22 E-value=2.4e-07 Score=86.49 Aligned_cols=80 Identities=26% Similarity=0.306 Sum_probs=64.6
Q ss_pred cccCcccEEEccCCcCCC--CCcHhhhhcCCCCEEeCCCCcCcccCCccccCCC--CCCEEeCCCCcccccCCC------
Q 041121 425 STLGLIKSLELSSNKLNG--AVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLK--SLDFLDLSRNQLVGGIPS------ 494 (574)
Q Consensus 425 ~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~--~L~~L~L~~N~i~~~~~~------ 494 (574)
..+++|+.|+|++|.|++ .++..+..+++|+.|+|++|+|++. ..+..+. .|++|+|++|.+.+..|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 568899999999999986 3446788999999999999999865 3344444 999999999999875542
Q ss_pred -CccCCCCCCEEe
Q 041121 495 -SLSPLSVLSVMD 506 (574)
Q Consensus 495 -~l~~l~~L~~L~ 506 (574)
.+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 367788898886
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.08 E-value=6.7e-07 Score=77.26 Aligned_cols=88 Identities=11% Similarity=0.124 Sum_probs=68.0
Q ss_pred hhhhhcCCCCCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCC-CCCC-----CC---cCCcccEEEccCC-cCCCC
Q 041121 4 LLMRSLRLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCY-LRPL-----SN---ISSNFVSIDLSFN-QLQGS 73 (574)
Q Consensus 4 l~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-----~~---~~~~L~~L~Ls~n-~i~~~ 73 (574)
||.....-..|+.||++++.|++. ....+..|++|++|+|++|. |++. .. ..++|++|+|++| +|+..
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~--GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSI--GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGG--GGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred CCcccCCCceEeEEeCcCCCccHH--HHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence 453333345799999999998876 12368999999999999995 6664 22 1347999999999 48866
Q ss_pred CCccccCCCCCCEEEccCCc
Q 041121 74 IPDSSQHMVYLEHLSLMFNE 93 (574)
Q Consensus 74 ~~~~~~~l~~L~~L~L~~n~ 93 (574)
.-..+.++++|++|+++++.
T Consensus 131 Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 131 GIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHHHGGGCTTCCEEEEESCT
T ss_pred HHHHHhcCCCCCEEECCCCC
Confidence 55677889999999999885
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=8.9e-06 Score=67.04 Aligned_cols=56 Identities=23% Similarity=0.199 Sum_probs=30.8
Q ss_pred EEeCCCCcCc-ccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCc
Q 041121 456 ALNLSRNHLT-GQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLS 513 (574)
Q Consensus 456 ~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~ 513 (574)
.++.++++++ ..+|..+. ++|+.|+|++|+|+.+.++.|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666666665 12332221 35666666666666555556666666665554444443
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.91 E-value=1.7e-06 Score=74.73 Aligned_cols=84 Identities=14% Similarity=0.103 Sum_probs=68.2
Q ss_pred CcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCc-CcccCCccccCC----CCCCEEeCCCC-cccccCCCCccCCCC
Q 041121 428 GLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNH-LTGQNSPKIGQL----KSLDFLDLSRN-QLVGGIPSSLSPLSV 501 (574)
Q Consensus 428 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l----~~L~~L~L~~N-~i~~~~~~~l~~l~~ 501 (574)
..|+.||++++.|++.--..+.++++|++|+|++|. |++..-..+..+ ++|++|+|++| +|+..--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 458999999999986656677899999999999995 776544555554 47999999998 588755556778999
Q ss_pred CCEEeccCCc
Q 041121 502 LSVMDLSYNN 511 (574)
Q Consensus 502 L~~L~Ls~N~ 511 (574)
|+.|+++++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999999986
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.83 E-value=1e-05 Score=71.31 Aligned_cols=89 Identities=7% Similarity=0.039 Sum_probs=62.4
Q ss_pred hhhhhcCCCCCcEEECCCC-CCCCC--CchhhhcCCCCCCcEEEccCCCCCCC--CCc------CCcccEEEccCCcCCC
Q 041121 4 LLMRSLRLHSLRYLNLEEN-NLANC--SDWFQVIGKLHSLKTLTSHSCYLRPL--SNI------SSNFVSIDLSFNQLQG 72 (574)
Q Consensus 4 l~~~l~~l~~L~~L~Ls~n-~i~~~--~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~------~~~L~~L~Ls~n~i~~ 72 (574)
+.+.+.+-+.|++|+|++| .|.+. ..+.+++..-..|+.|+|++|+|.+. ..+ ...|++|+|++|.|..
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 4455667788888999885 77655 44556788888888888888888765 111 2578888888888764
Q ss_pred C----CCccccCCCCCCEEEccCC
Q 041121 73 S----IPDSSQHMVYLEHLSLMFN 92 (574)
Q Consensus 73 ~----~~~~~~~l~~L~~L~L~~n 92 (574)
. +.+++..-+.|++|+|+++
T Consensus 113 ~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 113 ELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHHHHhhCCceeEEECCCC
Confidence 3 4445566667888888754
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.50 E-value=4.3e-05 Score=67.22 Aligned_cols=111 Identities=14% Similarity=0.111 Sum_probs=62.5
Q ss_pred cccEEEccCC-cCCC----CCCccccCCCCCCEEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEc
Q 041121 59 NFVSIDLSFN-QLQG----SIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHL 133 (574)
Q Consensus 59 ~L~~L~Ls~n-~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L 133 (574)
.|++|+|++| +|.. .+.+++..-+.|++|+|++|.+.......++. ++..-.. |++|+|
T Consensus 42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~---------------aL~~N~t-L~~L~L 105 (197)
T 1pgv_A 42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIE---------------LIETSPS-LRVLNV 105 (197)
T ss_dssp SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHH---------------HHHHCSS-CCEEEC
T ss_pred CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHH---------------HHhcCCc-cCeEec
Confidence 4444455543 4432 24455566667777777777776444444332 2333333 777777
Q ss_pred cCCccccc----C-CCCCCCCCCCEEEccCc---cccc----ccchhhhccCCCCEEEccCCCC
Q 041121 134 EVNHFTGP----I-PDLGGFSSMKRLYLSDN---LLNG----TINKSIGQIFKLEITCLSQNSL 185 (574)
Q Consensus 134 ~~n~l~~~----~-~~l~~l~~L~~L~L~~n---~i~~----~~~~~~~~l~~L~~L~Ls~N~l 185 (574)
++|.|... + ..+..-+.|++|+|++| .+.. .+..++...+.|+.|+++.|.+
T Consensus 106 ~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 106 ESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp CSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred CCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 77777641 1 11445566777777654 3332 2445666677788887776543
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00092 Score=54.84 Aligned_cols=55 Identities=16% Similarity=0.079 Sum_probs=47.4
Q ss_pred cEEEccCCCCC--CCC-CcCCcccEEEccCCcCCCCCCccccCCCCCCEEEccCCcCc
Q 041121 41 KTLTSHSCYLR--PLS-NISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELE 95 (574)
Q Consensus 41 ~~L~l~~n~l~--~~~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 95 (574)
..++.++++++ .++ .+.++|++|+|++|+|+.+.+..|..+++|++|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47888888887 774 56678999999999999888889999999999999999875
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 574 | ||||
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 2e-18 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 4e-09 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 7e-05 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 1e-04 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 0.001 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 4e-11 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 4e-09 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 5e-07 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 1e-05 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-04 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 0.003 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 1e-10 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 4e-10 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 6e-09 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 5e-08 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 1e-07 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 1e-06 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 7e-08 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 2e-07 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 4e-05 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 1e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 8e-07 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 3e-05 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 4e-04 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 1e-05 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 6e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 3e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 7e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 2e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 3e-04 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 2e-04 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 4e-04 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 5e-04 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 0.001 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 0.003 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 84.4 bits (207), Expect = 2e-18
Identities = 61/268 (22%), Positives = 96/268 (35%), Gaps = 11/268 (4%)
Query: 277 LVILDLGNNSFSGR--IPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERF 334
+ LDL + IP S+ L + + N TQ +
Sbjct: 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY---- 107
Query: 335 VRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYY 394
+ G P L Q L LD S N +SG +P ++ + I
Sbjct: 108 --ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI---S 162
Query: 395 YTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGL 454
F + + +G+ + L + S + +
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222
Query: 455 VALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSG 514
+ + K+G K+L+ LDL N++ G +P L+ L L +++S+NNL G
Sbjct: 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282
Query: 515 KIPTGTQLQSFNGSVYAGNPELCGLPLP 542
+IP G LQ F+ S YA N LCG PLP
Sbjct: 283 EIPQGGNLQRFDVSAYANNKCLCGSPLP 310
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 55.9 bits (133), Expect = 4e-09
Identities = 39/258 (15%), Positives = 77/258 (29%), Gaps = 16/258 (6%)
Query: 54 SNISSNFVSIDLSFNQLQG--SIPDSSQHMVYLEHLSLMFNE------LEGGIPKFFGNM 105
+ ++DLS L IP S ++ YL L + +
Sbjct: 46 DTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHY 105
Query: 106 LNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTI 165
L ++ ++ +K + P + ++ + N ++G I
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165
Query: 166 NKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPL 225
S G KL + + ++ GK+P + + + + + +
Sbjct: 166 PDSYGSFSKLFTSMTISRN-------RLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFG 218
Query: 226 PSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNN 285
++ L +DL +N + G LP L L++ N
Sbjct: 219 SDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278
Query: 286 SFSGRIPDSMGFLQNIQT 303
+ G IP G LQ
Sbjct: 279 NLCGEIPQG-GNLQRFDV 295
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 42.8 bits (99), Expect = 7e-05
Identities = 19/138 (13%), Positives = 31/138 (22%), Gaps = 20/138 (14%)
Query: 22 NNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNISSNFVSIDLSFNQLQGSIPDSSQHM 81
N L L + + + S
Sbjct: 184 NRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS 243
Query: 82 VYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGP 141
L L L N + G +P+ + L SL++ N+ G
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQL--------------------KFLHSLNVSFNNLCGE 283
Query: 142 IPDLGGFSSMKRLYLSDN 159
IP G ++N
Sbjct: 284 IPQGGNLQRFDVSAYANN 301
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 42.4 bits (98), Expect = 1e-04
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 46 HSCYLRPLSNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFG-- 103
+ +S N +DL N++ G++P + +L L++ FN L G IP+
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQ 291
Query: 104 --NMLNLSDNKL 113
++ ++NK
Sbjct: 292 RFDVSAYANNKC 303
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 39.0 bits (89), Expect = 0.001
Identities = 49/267 (18%), Positives = 90/267 (33%), Gaps = 30/267 (11%)
Query: 10 RLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCY-----LRPLSNISSNFVSID 64
+ + + L+L NL + L L L + P + +
Sbjct: 48 QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107
Query: 65 LSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNM-----LNLSDNKLAIIQNM 119
++ + G+IPD + L L +N L G +P ++ + N+++
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167
Query: 120 SSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITC 179
S G S+ + N TG IP ++ + LS N+L G + G +
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIH 227
Query: 180 ---------------LSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPP 224
+ DL N +I G LP ++ +++S N+ G IP
Sbjct: 228 LAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQL-KFLHSLNVSFNNLCGEIPQ 286
Query: 225 LPSNSSF--LNLSKNRFSRSISL--CS 247
+ F + N+ L C+
Sbjct: 287 GGNLQRFDVSAYANNKCLCGSPLPACT 313
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 62.0 bits (149), Expect = 4e-11
Identities = 41/250 (16%), Positives = 85/250 (34%), Gaps = 22/250 (8%)
Query: 54 SNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNM-----LNL 108
++ + +DL N++ +++ L L L+ N++ P F + L L
Sbjct: 27 KDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 86
Query: 109 SDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKS 168
S N+L + L+ L E+ + + + L + +G N +
Sbjct: 87 SKNQLKELPEKMPKTLQE-LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 145
Query: 169 IGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSN 228
+ KL ++ ++T + +G P L+ + + N
Sbjct: 146 FQGMKKLSYIRIADTNITTIP----QGLPPSLTE--------LHLDGNKITKVDAASLKG 193
Query: 229 SSF---LNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNN 285
+ L LS N S + + L + L++N L P + ++ L NN
Sbjct: 194 LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNN 252
Query: 286 SFSGRIPDSM 295
+ S +
Sbjct: 253 NISAIGSNDF 262
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 55.8 bits (133), Expect = 4e-09
Identities = 41/319 (12%), Positives = 84/319 (26%), Gaps = 48/319 (15%)
Query: 210 GIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPD 269
+ S E LP +++ L+L N+ + + L + L +N +S P
Sbjct: 14 VVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG 73
Query: 270 CWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFES 329
+ L L L N LQ ++ + R++VF + +
Sbjct: 74 AFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGT 133
Query: 330 WEERFVRLKSNKFHGKTPFQLCQ-------------FAFLQVLDLSLNNISGKIPKCFNN 376
+ +++ F G + L L L N I+
Sbjct: 134 NPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKG 193
Query: 377 FTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELS 436
+ + S +I + +
Sbjct: 194 LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV------------------- 234
Query: 437 SNKLNGAVPEEIMDLVGLVALNLSRNHLTG------QNSPKIGQLKSLDFLDLSRNQLVG 490
P + D + + L N+++ + S + L N +
Sbjct: 235 --------PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 286
Query: 491 G--IPSSLSPLSVLSVMDL 507
PS+ + V + + L
Sbjct: 287 WEIQPSTFRCVYVRAAVQL 305
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 49.3 bits (116), Expect = 5e-07
Identities = 43/262 (16%), Positives = 82/262 (31%), Gaps = 38/262 (14%)
Query: 253 LTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNR 312
+DL +N ++ + +L L L NN S P + L ++
Sbjct: 33 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLER--------- 83
Query: 313 RTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPK 372
+ L N+ L+V + + + +
Sbjct: 84 ----------------------LYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFN 121
Query: 373 CFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKS 432
N + + + + F G + + D + T + +
Sbjct: 122 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP------QGLPPSLTE 175
Query: 433 LELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGI 492
L L NK+ + L L L LS N ++ ++ + L L L+ N+LV +
Sbjct: 176 LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-V 234
Query: 493 PSSLSPLSVLSVMDLSYNNLSG 514
P L+ + V+ L NN+S
Sbjct: 235 PGGLADHKYIQVVYLHNNNISA 256
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 45.0 bits (105), Expect = 1e-05
Identities = 35/208 (16%), Positives = 66/208 (31%), Gaps = 6/208 (2%)
Query: 333 RFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKV 392
+ L++NK L L L N IS P F + + S +K
Sbjct: 34 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE 93
Query: 393 YYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLV 452
+ ++ L + K +G +
Sbjct: 94 LPEKMPKTLQELRVHENEITKVRK---SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150
Query: 453 GLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNL 512
L + ++ ++T + G SL L L N++ +SL L+ L+ + LS+N++
Sbjct: 151 KLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 207
Query: 513 SGKIPTGTQLQSFNGSVYAGNPELCGLP 540
S ++ N +L +P
Sbjct: 208 SAVDNGSLANTPHLRELHLNNNKLVKVP 235
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 41.6 bits (96), Expect = 2e-04
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Query: 431 KSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVG 490
+ ++ S L VP+++ L+L N +T LK+L L L N++
Sbjct: 13 RVVQCSDLGLE-KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 69
Query: 491 GIPSSLSPLSVLSVMDLSYNNLSG 514
P + +PL L + LS N L
Sbjct: 70 ISPGAFAPLVKLERLYLSKNQLKE 93
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 37.7 bits (86), Expect = 0.003
Identities = 38/249 (15%), Positives = 65/249 (26%), Gaps = 37/249 (14%)
Query: 276 SLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFV 335
+LDL NN + L+N+ T +
Sbjct: 32 DTALLDLQNNKITEIKDGDFKNLKNLHT-------------------------------L 60
Query: 336 RLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYY 395
L +NK +P L+ L LS N + K + + +
Sbjct: 61 ILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKV----- 115
Query: 396 TFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLV 455
+ ++ S +K L L
Sbjct: 116 -RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLT 174
Query: 456 ALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGK 515
L+L N +T ++ + L +L L LS N + SL+ L + L+ N L
Sbjct: 175 ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV 234
Query: 516 IPTGTQLQS 524
+
Sbjct: 235 PGGLADHKY 243
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 61.6 bits (148), Expect = 1e-10
Identities = 54/384 (14%), Positives = 131/384 (34%), Gaps = 40/384 (10%)
Query: 153 RLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGID 212
+ L + T++++ + ++ + + + ++ L +L+ I+
Sbjct: 26 KTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSIDGVE---YLNNLTQ--------IN 72
Query: 213 ISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWW 272
S+N I PL + + +++ N + + + LT + L +N ++ P
Sbjct: 73 FSNNQLTD-ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNL 131
Query: 273 MFD--------SLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTT 324
++ + + S + + +++ R + +
Sbjct: 132 TNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS 191
Query: 325 QTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQER 384
+ + +N+ TP + L L L+ N + + T +T
Sbjct: 192 VLAKLTNLESLIATNNQISDITPLGILTN--LDELSLNGNQLKD--IGTLASLTNLTDLD 247
Query: 385 SSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAV 444
++ I P + + + S + L + +LEL+ N+L
Sbjct: 248 LANNQISNL------APLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLE--D 299
Query: 445 PEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSV 504
I +L L L L N+++ + L L L + N++ SSL+ L+ ++
Sbjct: 300 ISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFANNKVSD--VSSLANLTNINW 355
Query: 505 MDLSYNNLSGKIPTG--TQLQSFN 526
+ +N +S P T++
Sbjct: 356 LSAGHNQISDLTPLANLTRITQLG 379
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 59.6 bits (143), Expect = 4e-10
Identities = 34/181 (18%), Positives = 76/181 (41%), Gaps = 11/181 (6%)
Query: 10 RLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNISS--NFVSIDLSF 67
+L +L L N +++ + + +L L+ + L+ + ++S N +DL+
Sbjct: 195 KLTNLESLIATNNQISDITPLGIL----TNLDELSLNGNQLKDIGTLASLTNLTDLDLAN 250
Query: 68 NQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNS 127
NQ+ P S + L L L N++ P L + ++++S +
Sbjct: 251 NQISNLAPLS--GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKN 308
Query: 128 LESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTD 187
L L L N+ + P + + ++RL+ ++N ++ S+ + + N ++D
Sbjct: 309 LTYLTLYFNNISDISP-VSSLTKLQRLFFANNKVSDV--SSLANLTNINWLSAGHNQISD 365
Query: 188 L 188
L
Sbjct: 366 L 366
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 55.8 bits (133), Expect = 6e-09
Identities = 58/412 (14%), Positives = 115/412 (27%), Gaps = 84/412 (20%)
Query: 106 LNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTI 165
L + I + L N L ++ N T P L + + + +++N +
Sbjct: 49 LQADRLGIKSIDGV--EYLNN-LTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADIT 104
Query: 166 NKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSS-------RFGTSNPGIDISSNHF 218
+ +Q + D +LSS +S +
Sbjct: 105 PLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQ 164
Query: 219 EGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLV 278
+ PL + ++ L + S + L + ++N +S P +L
Sbjct: 165 VTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT--NLD 222
Query: 279 ILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLK 338
L L N ++ L N+ + L
Sbjct: 223 ELSLNGNQLKD--IGTLASLTNLT-------------------------------DLDLA 249
Query: 339 SNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFV 398
+N+ P L L L N IS
Sbjct: 250 NNQISNLAPL--SGLTKLTELKLGANQISNI----------------------------- 278
Query: 399 GPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALN 458
P + + + + S L + L L N ++ P + L L L
Sbjct: 279 -SPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLF 335
Query: 459 LSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYN 510
+ N ++ + L ++++L NQ+ P L+ L+ ++ + L+
Sbjct: 336 FANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 53.1 bits (126), Expect = 5e-08
Identities = 50/326 (15%), Positives = 102/326 (31%), Gaps = 46/326 (14%)
Query: 11 LHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNISSNFVSIDLSFNQL 70
L++L +N N L + + + L L + ++ + ++ +++ L+
Sbjct: 65 LNNLTQINFSNNQLTDITP----LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNN 120
Query: 71 QGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLE- 129
Q + D +++ L L L N + L + L
Sbjct: 121 QITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERL 180
Query: 130 --------------------SLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSI 169
SL N + P G +++ L L+ N L ++
Sbjct: 181 DISSNKVSDISVLAKLTNLESLIATNNQISDITPL-GILTNLDELSLNGNQLKDI--GTL 237
Query: 170 GQIFKLEITCLSQNSLTDLANIQIKGKLPDLS------------SRFGTSNPGIDISSNH 217
+ L L+ N +++LA + KL +L + +
Sbjct: 238 ASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQL 297
Query: 218 FEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSL 277
+ N ++L L N S + S+ +KL + ++N +S ++
Sbjct: 298 EDISPISNLKNLTYLTLYFNNISDISPVSSL--TKLQRLFFANNKVSD--VSSLANLTNI 353
Query: 278 VILDLGNNSFSGRIPDSMGFLQNIQT 303
L G+N S P + L I
Sbjct: 354 NWLSAGHNQISDLTP--LANLTRITQ 377
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 51.5 bits (122), Expect = 1e-07
Identities = 42/204 (20%), Positives = 83/204 (40%), Gaps = 25/204 (12%)
Query: 62 SIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLA--IIQNM 119
S+ + NQ+ P + L+ LSL N+L+ ++ NL+D LA I N+
Sbjct: 201 SLIATNNQISDITPL--GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNL 256
Query: 120 SSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITC 179
+ L L L N + I L G +++ L L++N I + L
Sbjct: 257 APLSGLTKLTELKLGANQISN-ISPLAGLTALTNLELNEN--QLEDISPISNLKNLTYLT 313
Query: 180 LSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSS--FLNLSKN 237
L N+++D++ + L L + ++N L + ++ +L+ N
Sbjct: 314 LYFNNISDISPV---SSLTKLQR--------LFFANNKVSDV-SSLANLTNINWLSAGHN 361
Query: 238 RFSRSISLCSISGSKLTYIDLSSN 261
+ S L +++ ++T + L+
Sbjct: 362 QISDLTPLANLT--RITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 48.1 bits (113), Expect = 1e-06
Identities = 57/348 (16%), Positives = 110/348 (31%), Gaps = 39/348 (11%)
Query: 37 LHSLKTLTSHSCYLRPLSNIS--SNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNEL 94
L + TL + ++ + + +N I+ S NQL P +++ L + + N++
Sbjct: 43 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI 100
Query: 95 EGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRL 154
P L I ++ +L L L N +
Sbjct: 101 ADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTIS--------------- 145
Query: 155 YLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDIS 214
+S ++ + ++ L+ + + +I T+ + +
Sbjct: 146 DISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIAT 205
Query: 215 SNHFEGPIPP-LPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWM 273
+N P + +N L+L+ N+ +L S+ + LT +DL++N +S P
Sbjct: 206 NNQISDITPLGILTNLDELSLNGNQLKDIGTLASL--TNLTDLDLANNQISNLAPLSGLT 263
Query: 274 FDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEER 333
L L LG N S P + N+ L
Sbjct: 264 --KLTELKLGANQISNISP----LAGLTALTNLELNENQLEDISPISNL-------KNLT 310
Query: 334 FVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMT 381
++ L N +P LQ L + N +S N T +
Sbjct: 311 YLTLYFNNISDISPVSSLT--KLQRLFFANNKVSD--VSSLANLTNIN 354
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.7 bits (122), Expect = 7e-08
Identities = 49/305 (16%), Positives = 87/305 (28%), Gaps = 38/305 (12%)
Query: 211 IDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDC 270
+ +P+ S + L NR S + + LT + L SN+L+
Sbjct: 16 TSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA 75
Query: 271 WWMFDSLVILDLGNNSFSGRI-PDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFES 329
+ L LDL +N+ + P + L + T + EL
Sbjct: 76 FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL-------QELGPGLFRGL 128
Query: 330 WEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPT 389
+++ L+ N L L L N IS + F ++ +
Sbjct: 129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL----- 183
Query: 390 IKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIM 449
+ V P + N L+ E +
Sbjct: 184 LHQNRVAHVHPHAFRDLGRLMTLYLFA---------------------NNLSALPTEALA 222
Query: 450 DLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSY 509
L L L L+ N + L S +++ +P L+ + L+
Sbjct: 223 PLRALQYLRLNDNPWVC-DCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLK---RLAA 278
Query: 510 NNLSG 514
N+L G
Sbjct: 279 NDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.6 bits (119), Expect = 2e-07
Identities = 43/251 (17%), Positives = 77/251 (30%), Gaps = 19/251 (7%)
Query: 54 SNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNM------LN 107
I + I L N++ S + L L L N L F +
Sbjct: 28 VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87
Query: 108 LSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNLLNGTIN 166
+ +L + + L L +LHL+ P G ++++ LYL DN L +
Sbjct: 88 SDNAQLRSVDPATFHGLGR-LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD 146
Query: 167 KSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLP 226
+ + L L N ++ + +G L L N + + F +
Sbjct: 147 DTFRDLGNLTHLFLHGNRISSVPERAFRG-LHSLDRLLLHQNRVAHVHPHAFRDLGRLMT 205
Query: 227 SNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDC--WWMFDSLVILDLGN 284
N S + L Y+ L+ N DC ++ L +
Sbjct: 206 LYLFA-----NNLSALPTEALAPLRALQYLRLNDNPWVC---DCRARPLWAWLQKFRGSS 257
Query: 285 NSFSGRIPDSM 295
+ +P +
Sbjct: 258 SEVPCSLPQRL 268
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.3 bits (100), Expect = 4e-05
Identities = 37/211 (17%), Positives = 53/211 (25%), Gaps = 26/211 (12%)
Query: 356 LQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPT 415
Q + L N IS F +T +
Sbjct: 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAF-TGLALLEQLDLSDNAQ 92
Query: 416 WKGSGREYRSTLGLIKSLELSS------------------------NKLNGAVPEEIMDL 451
+ LG + +L L N L + DL
Sbjct: 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152
Query: 452 VGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNN 511
L L L N ++ L SLD L L +N++ P + L L + L NN
Sbjct: 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212
Query: 512 LSGKIPTGTQLQSFNGSVY-AGNPELCGLPL 541
LS + NP +C
Sbjct: 213 LSALPTEALAPLRALQYLRLNDNPWVCDCRA 243
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.7 bits (96), Expect = 1e-04
Identities = 38/216 (17%), Positives = 65/216 (30%), Gaps = 35/216 (16%)
Query: 30 WFQVIGKLHSLKTLTSHSCYLRPLSN----ISSNFVSIDLSFNQLQGSIPDSSQHMVYLE 85
L L TL C L+ L + + L N LQ D+ + + L
Sbjct: 97 DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT 156
Query: 86 HLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPD- 144
HL L N + + F + +SL+ L L N P
Sbjct: 157 HLFLHGNRISSVPERAFRGL--------------------HSLDRLLLHQNRVAHVHPHA 196
Query: 145 LGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRF 204
+ LYL N L+ +++ + L+ L+ N + + + + L
Sbjct: 197 FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW--VCDCRARPLWAWLQK-- 252
Query: 205 GTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFS 240
SS+ +P + L+ N
Sbjct: 253 ------FRGSSSEVPCSLPQRLAGRDLKRLAANDLQ 282
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 49.1 bits (115), Expect = 8e-07
Identities = 42/313 (13%), Positives = 78/313 (24%), Gaps = 26/313 (8%)
Query: 211 IDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDC 270
+++++ +P LP + L S N + L + S L + + +N L
Sbjct: 43 LELNNLGLSS-LPELPPHLESLVASCNSLT---ELPELPQS-LKSLLVDNN----NLKAL 93
Query: 271 WWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESW 330
+ L L + NN I + E + +
Sbjct: 94 SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLE 153
Query: 331 EERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTI 390
E ++ + L L I + + +
Sbjct: 154 ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADN 213
Query: 391 KVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKS---------LELSSNKLN 441
+ PP + + +D + + N +
Sbjct: 214 NLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASS 273
Query: 442 GAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSV 501
+ L LN+S N L + L+ L S N L +P L
Sbjct: 274 NEIRSLCDLPPSLEELNVSNNKLIELPA----LPPRLERLIASFNHL-AEVPELPQNLKQ 328
Query: 502 LSVMDLSYNNLSG 514
L + YN L
Sbjct: 329 L---HVEYNPLRE 338
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 44.0 bits (102), Expect = 3e-05
Identities = 42/304 (13%), Positives = 90/304 (29%), Gaps = 11/304 (3%)
Query: 225 LPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPD--CWWMFDSLVILDL 282
L + L L+ S SL + L + S N L+ +LP+ + +L
Sbjct: 36 LDRQAHELELNNLGLS---SLPELPPH-LESLVASCNSLT-ELPELPQSLKSLLVDNNNL 90
Query: 283 GNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKF 342
S + + +G N + + Q + I + + + + +
Sbjct: 91 KALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNN 150
Query: 343 HGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPY 402
+ +L FL + N++ + + + + ++ F+ Y
Sbjct: 151 QLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIY 210
Query: 403 VHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRN 462
+ + R S L L N
Sbjct: 211 ADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLN 270
Query: 463 HLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTGTQL 522
+ + SL+ L++S N+L+ +P+ L L S+N+L+ L
Sbjct: 271 ASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERL---IASFNHLAEVPELPQNL 326
Query: 523 QSFN 526
+ +
Sbjct: 327 KQLH 330
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 40.6 bits (93), Expect = 4e-04
Identities = 29/159 (18%), Positives = 53/159 (33%), Gaps = 11/159 (6%)
Query: 1 MRKLLMRSLRLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNISSNF 60
+ L + L+ L +L + + L L + + + S
Sbjct: 203 LPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSEL 262
Query: 61 VSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNM--LNLSDNKLAIIQN 118
N I LE L++ N+L +P + L S N LA +
Sbjct: 263 PPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERLIASFNHLAEVPE 321
Query: 119 MSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLS 157
+ +L+ LH+E N PD+ S++ L ++
Sbjct: 322 LPQ-----NLKQLHVEYNPLRE-FPDI--PESVEDLRMN 352
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.7 bits (104), Expect = 1e-05
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 429 LIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQL 488
L ++L+L+ L+ V ++ G++A R+ + Q + + +DLS + +
Sbjct: 1 LWQTLDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMD-QPLAEHFSPFRVQHMDLSNSVI 58
Query: 489 -VGGIPSSLSPLSVLSVMDLSYNNLSGKIP 517
V + LS S L + L LS I
Sbjct: 59 EVSTLHGILSQCSKLQNLSLEGLRLSDPIV 88
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.8 bits (99), Expect = 6e-05
Identities = 32/274 (11%), Positives = 72/274 (26%), Gaps = 12/274 (4%)
Query: 211 IDISSNHFEGPIPP--LPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGK-L 267
+D++ + + L ++ + ++ S ++ ++DLS++++ L
Sbjct: 5 LDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVIEVSTL 63
Query: 268 PDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQT---QFTQQQFNRRTVFIVWELLTT 324
L L L S I +++ N+ ++
Sbjct: 64 HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 123
Query: 325 QTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQER 384
K + + L +L
Sbjct: 124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS 183
Query: 385 SSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAV 444
S + F Y+ H S + +K+L++ +G +
Sbjct: 184 DSVMLKNDCFQEFFQLNYLQHLSLSR--CYDIIPETLLELGEIPTLKTLQVFGIVPDGTL 241
Query: 445 PEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSL 478
L L ++ +H T P IG K+
Sbjct: 242 QLLKE---ALPHLQINCSHFTTIARPTIGNKKNQ 272
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.2 bits (102), Expect = 3e-05
Identities = 46/437 (10%), Positives = 104/437 (23%), Gaps = 25/437 (5%)
Query: 106 LNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPD-----LGGFSSMKRLYLSDNL 160
L++ +L+ + L + + L+ T L ++ L L N
Sbjct: 7 LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66
Query: 161 LNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEG 220
L + Q + + + SL + + + R + + +S N
Sbjct: 67 LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD 126
Query: 221 PIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVIL 280
L + + + S + K + +
Sbjct: 127 AGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV 186
Query: 281 DLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSN 340
+ + + + L S + V +
Sbjct: 187 RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAEL 246
Query: 341 KFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIK--------- 391
P + ++ ++ + + +
Sbjct: 247 CPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCET 306
Query: 392 -VYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMD 450
+ + +V SF + + R L L S + + + +
Sbjct: 307 LLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQ 366
Query: 451 LV-GLVALNLSRNHLTGQNSPKIGQ----LKSLDFLDLSRNQLVGGIPSSLS-----PLS 500
L L L+ ++ + + SL LDLS N L L P
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426
Query: 501 VLSVMDLSYNNLSGKIP 517
+L + L S ++
Sbjct: 427 LLEQLVLYDIYWSEEME 443
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.0 bits (99), Expect = 7e-05
Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 5/90 (5%)
Query: 430 IKSLELSSNKLNGAVPEEIMD-LVGLVALNLSRNHLTGQNSPKIGQ----LKSLDFLDLS 484
I+SL++ +L+ A E++ L + L LT I +L L+L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 485 RNQLVGGIPSSLSPLSVLSVMDLSYNNLSG 514
N+L + + +L
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.9 bits (96), Expect = 2e-04
Identities = 56/464 (12%), Positives = 116/464 (25%), Gaps = 36/464 (7%)
Query: 57 SSNFVSIDLSFNQLQGS-IPDSSQHMVYLEHLSLMFNELEGGIPKFFGNM---------L 106
S + S+D+ +L + + + + + L L K + L
Sbjct: 1 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60
Query: 107 NLSDNKL--AIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGT 164
NL N+L + + G S + L + + G SS R + L+ +
Sbjct: 61 NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 120
Query: 165 INKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPP 224
N +L L L S S
Sbjct: 121 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 180
Query: 225 LPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGN 284
+ + + S S D +L +L LG+
Sbjct: 181 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 240
Query: 285 NSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHG 344
+ P + ++T + + + E +
Sbjct: 241 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 300
Query: 345 KTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVH 404
+ + Q + + + T S + + F+ +
Sbjct: 301 RLLCETLLEPGCQ------------LESLWVKSCSFTAACCSHFSSVLAQNRFLLELQIS 348
Query: 405 HYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVG----LVALNLS 460
+ +D + + S L + L L+ ++ + + + L L+LS
Sbjct: 349 NNRLEDAGVRELCQGLGQPGSVL---RVLWLADCDVSDSSCSSLAATLLANHSLRELDLS 405
Query: 461 RNHLTGQNSPKIGQ-----LKSLDFLDLSRNQLVGGIPSSLSPL 499
N L ++ + L+ L L + L L
Sbjct: 406 NNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.1 bits (94), Expect = 3e-04
Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 5/69 (7%)
Query: 454 LVALNLSRNHLTGQNSPKI-GQLKSLDFLDLSRNQL----VGGIPSSLSPLSVLSVMDLS 508
+ +L++ L+ ++ L+ + L L I S+L L+ ++L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 509 YNNLSGKIP 517
N L
Sbjct: 64 SNELGDVGV 72
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.0 bits (94), Expect = 2e-04
Identities = 26/243 (10%), Positives = 54/243 (22%), Gaps = 11/243 (4%)
Query: 245 LCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQ 304
+C S + ++ ++P + + + L + +++
Sbjct: 5 ICHCSN---RVFLCQESKVT-EIPSD--LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKI 58
Query: 305 FTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLN 364
Q + + K+N P LQ L +S
Sbjct: 59 EISQNDVLEVIEADV-----FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT 113
Query: 365 NISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYR 424
I + D +
Sbjct: 114 GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAF 173
Query: 425 STLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLS 484
+ L + +N L + G V L++SR + S + LK L
Sbjct: 174 NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 233
Query: 485 RNQ 487
+
Sbjct: 234 NLK 236
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 40.2 bits (92), Expect = 4e-04
Identities = 32/296 (10%), Positives = 78/296 (26%), Gaps = 22/296 (7%)
Query: 251 SKLTYIDLSSNLLSGK----LPDCWWMFDSLVILDLGNNS---FSGRIPDSMGFL----Q 299
+ I LS N + + L + L I + + IP+++ L
Sbjct: 31 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALL 90
Query: 300 NIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVL 359
T + + E L + + L +N + ++ + +
Sbjct: 91 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAV 150
Query: 360 DLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGS 419
+ N + V + + +
Sbjct: 151 NKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEG 210
Query: 420 GREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQ----- 474
+ L ++ + A+ + L L L+ L+ + + +
Sbjct: 211 LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL 270
Query: 475 -LKSLDFLDLSRNQLVGGIPSSLSP-----LSVLSVMDLSYNNLSGKIPTGTQLQS 524
L L L N++ +L + L ++L+ N S + +++
Sbjct: 271 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIRE 326
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.2 bits (88), Expect = 5e-04
Identities = 22/108 (20%), Positives = 37/108 (34%), Gaps = 26/108 (24%)
Query: 431 KSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDF---------- 480
+ L L+ L V + L+ + L+LS N L P + L+ L+
Sbjct: 1 RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALP-PALAALRCLEVLQASDNALEN 57
Query: 481 ------------LDLSRNQLVGG-IPSSLSPLSVLSVMDLSYNNLSGK 515
L L N+L L L +++L N+L +
Sbjct: 58 VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.5 bits (88), Expect = 0.001
Identities = 32/176 (18%), Positives = 53/176 (30%), Gaps = 20/176 (11%)
Query: 356 LQVLDLSLNNISGKIPKCFNNFT-------------------AMTQERSSDPTIKVYYYT 396
+L LS N + +T + + D +
Sbjct: 33 TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSL 92
Query: 397 FVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVA 456
+ + + D LG ++ L L N+L P + L
Sbjct: 93 PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152
Query: 457 LNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNL 512
L+L+ N+LT + + L++LD L L N L IP +L L N
Sbjct: 153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.4 bits (85), Expect = 0.003
Identities = 30/245 (12%), Positives = 51/245 (20%), Gaps = 41/245 (16%)
Query: 245 LCSISG-SKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQT 303
+C +S + ++ L+ LP + IL L N ++
Sbjct: 3 ICEVSKVASHLEVNCDKRNLT-ALPPD--LPKDTTILHLSENLLYTFSLATLMPYTR--- 56
Query: 304 QFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSL 363
L +L L VL
Sbjct: 57 ---------------------------------LTQLNLDRAELTKLQVDGTLPVLGTLD 83
Query: 364 NNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREY 423
+ + T ++ + K
Sbjct: 84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL 143
Query: 424 RSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDL 483
+ ++ L L++N L + L L L L N L L F L
Sbjct: 144 LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFL 202
Query: 484 SRNQL 488
N
Sbjct: 203 HGNPW 207
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 574 | |||
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.96 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.96 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.96 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.94 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.94 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.93 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.93 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.93 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.92 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.9 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.87 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.86 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.78 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.78 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.76 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.75 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.74 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.74 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.72 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.72 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.7 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.69 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.68 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.68 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.56 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.56 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.52 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.52 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.49 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.48 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.47 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.45 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.44 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.32 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.32 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.25 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.38 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.3 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.98 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.92 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.79 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.44 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.96 E-value=1.1e-29 Score=247.06 Aligned_cols=259 Identities=28% Similarity=0.433 Sum_probs=196.7
Q ss_pred CCcEEEcCCCccccc--ccccccCCCCccEEECCC-CCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCcccc
Q 041121 228 NSSFLNLSKNRFSRS--ISLCSISGSKLTYIDLSS-NLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQ 304 (574)
Q Consensus 228 ~L~~L~L~~n~i~~~--~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l 304 (574)
.+++|+|+++.+.+. .+..+..+++|++|++++ |.+++.+|..+..+++|++|+|++|++.+..+..+..+.+|
T Consensus 51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L--- 127 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL--- 127 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC---
T ss_pred EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhh---
Confidence 456666666666553 234566677777777765 66666667777777777777777777776666666666666
Q ss_pred ccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccC-ccc
Q 041121 305 FTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAM-TQE 383 (574)
Q Consensus 305 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~l 383 (574)
+.++++.|.+.+..|..+..++.++.+++++|.+.+.+|..+..+..+ +.+
T Consensus 128 ----------------------------~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l 179 (313)
T d1ogqa_ 128 ----------------------------VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSM 179 (313)
T ss_dssp ----------------------------CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEE
T ss_pred ----------------------------cccccccccccccCchhhccCcccceeecccccccccccccccccccccccc
Confidence 667777777777777777777777777777777776666666665554 444
Q ss_pred cCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCc
Q 041121 384 RSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNH 463 (574)
Q Consensus 384 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 463 (574)
..+.|.+... .+..+..+. ...++++++.+.+.+|..+..+++|+++++++|.
T Consensus 180 ~~~~n~l~~~--------------------------~~~~~~~l~-~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 232 (313)
T d1ogqa_ 180 TISRNRLTGK--------------------------IPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS 232 (313)
T ss_dssp ECCSSEEEEE--------------------------CCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE
T ss_pred cccccccccc--------------------------ccccccccc-cccccccccccccccccccccccccccccccccc
Confidence 4555544311 111122222 3579999999988999999999999999999999
Q ss_pred CcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcccCCCcchhcccCcccccCCCCCCCCCCCC
Q 041121 464 LTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTGTQLQSFNGSVYAGNPELCGLPLPN 543 (574)
Q Consensus 464 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~l~~Np~~c~~~l~~ 543 (574)
+.+.++ .+..+++|+.|++++|++++.+|..|..+++|++|+|++|+|+|.+|....++.++.+++.||+.+||.|++
T Consensus 233 l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~plp- 310 (313)
T d1ogqa_ 233 LAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP- 310 (313)
T ss_dssp ECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-
T ss_pred cccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccCCCCC-
Confidence 987655 688899999999999999999999999999999999999999999998888999999999999999999987
Q ss_pred CCC
Q 041121 544 KCR 546 (574)
Q Consensus 544 ~c~ 546 (574)
.|+
T Consensus 311 ~c~ 313 (313)
T d1ogqa_ 311 ACT 313 (313)
T ss_dssp CCC
T ss_pred CCC
Confidence 674
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.96 E-value=3.3e-27 Score=236.73 Aligned_cols=79 Identities=22% Similarity=0.344 Sum_probs=61.8
Q ss_pred ccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEE
Q 041121 426 TLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVM 505 (574)
Q Consensus 426 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L 505 (574)
.+++++.|++++|++++. + .+..+++|++|++++|++++. + .+.++++|++|++++|++++..| +.++++|+.|
T Consensus 305 ~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~~l-~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L 378 (384)
T d2omza2 305 NLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVSDV-S-SLANLTNINWLSAGHNQISDLTP--LANLTRITQL 378 (384)
T ss_dssp GCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEE
T ss_pred hhcccCeEECCCCCCCCC-c-ccccCCCCCEEECCCCCCCCC-h-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEe
Confidence 455578888888888754 3 377888888888888888743 3 57888888888888888886654 7888888888
Q ss_pred eccCC
Q 041121 506 DLSYN 510 (574)
Q Consensus 506 ~Ls~N 510 (574)
+|++|
T Consensus 379 ~L~~N 383 (384)
T d2omza2 379 GLNDQ 383 (384)
T ss_dssp ECCCE
T ss_pred eCCCC
Confidence 88887
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.96 E-value=7.4e-27 Score=234.12 Aligned_cols=59 Identities=20% Similarity=0.354 Sum_probs=50.7
Q ss_pred cccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCc
Q 041121 425 STLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQ 487 (574)
Q Consensus 425 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 487 (574)
..+++|++|++++|+++ .++ .+.++++|++|++++|++++..| +.++++|++|+|++|.
T Consensus 326 ~~l~~L~~L~L~~n~l~-~l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~Na 384 (384)
T d2omza2 326 SSLTKLQRLFFANNKVS-DVS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA 384 (384)
T ss_dssp GGCTTCCEEECCSSCCC-CCG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCEE
T ss_pred ccCCCCCEEECCCCCCC-CCh-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCCc
Confidence 34666899999999998 444 68999999999999999997654 8899999999999984
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.94 E-value=3.3e-27 Score=229.53 Aligned_cols=248 Identities=27% Similarity=0.376 Sum_probs=162.1
Q ss_pred CcEEEccCCccccc--CCC-CCCCCCCCEEEccC-cccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhc
Q 041121 128 LESLHLEVNHFTGP--IPD-LGGFSSMKRLYLSD-NLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSR 203 (574)
Q Consensus 128 L~~L~L~~n~l~~~--~~~-l~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~ 203 (574)
++.|+|++|.+.+. +|. +.++++|++|+|++ |.+.+.+|..|.++++|++|+|++|++..
T Consensus 52 v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~---------------- 115 (313)
T d1ogqa_ 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG---------------- 115 (313)
T ss_dssp EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE----------------
T ss_pred EEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccc----------------
Confidence 66666666666542 333 66666666666664 56666666666666666666666655442
Q ss_pred CCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEcc
Q 041121 204 FGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLG 283 (574)
Q Consensus 204 ~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 283 (574)
..+..+....+|+++++++|.+.+..|..+..++.++.++++
T Consensus 116 --------------------------------------~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~ 157 (313)
T d1ogqa_ 116 --------------------------------------AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157 (313)
T ss_dssp --------------------------------------ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC
T ss_pred --------------------------------------cccccccchhhhcccccccccccccCchhhccCcccceeecc
Confidence 222233344556666666666555566666666666666666
Q ss_pred CcccccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccC
Q 041121 284 NNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSL 363 (574)
Q Consensus 284 ~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~ 363 (574)
+|.+.+.+|..+..+..+. +.++++.|++++..+..+..+. ...++++.
T Consensus 158 ~n~l~~~ip~~~~~l~~l~------------------------------~~l~~~~n~l~~~~~~~~~~l~-~~~l~l~~ 206 (313)
T d1ogqa_ 158 GNRISGAIPDSYGSFSKLF------------------------------TSMTISRNRLTGKIPPTFANLN-LAFVDLSR 206 (313)
T ss_dssp SSCCEEECCGGGGCCCTTC------------------------------CEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred ccccccccccccccccccc------------------------------cccccccccccccccccccccc-cccccccc
Confidence 6666666665555544431 4456666666666665555554 33577777
Q ss_pred CcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCC
Q 041121 364 NNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGA 443 (574)
Q Consensus 364 n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 443 (574)
+...+.+|..+..+ ++++.+++++|.+.+.
T Consensus 207 ~~~~~~~~~~~~~~--------------------------------------------------~~l~~l~~~~~~l~~~ 236 (313)
T d1ogqa_ 207 NMLEGDASVLFGSD--------------------------------------------------KNTQKIHLAKNSLAFD 236 (313)
T ss_dssp SEEEECCGGGCCTT--------------------------------------------------SCCSEEECCSSEECCB
T ss_pred cccccccccccccc--------------------------------------------------cccccccccccccccc
Confidence 77666555544333 3357788888887754
Q ss_pred CcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcC
Q 041121 444 VPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNL 512 (574)
Q Consensus 444 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l 512 (574)
+ ..+..+++|++|+|++|++++.+|..|.++++|++|+|++|++++.+|+ +..+++|+.+++++|+.
T Consensus 237 ~-~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~ 303 (313)
T d1ogqa_ 237 L-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKC 303 (313)
T ss_dssp G-GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSE
T ss_pred c-cccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCcc
Confidence 4 4577778888888888888888888888888888888888888887775 56778888888888874
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.94 E-value=5.8e-25 Score=212.69 Aligned_cols=221 Identities=17% Similarity=0.134 Sum_probs=151.9
Q ss_pred CCcEEEccCCCCCCC-CCcCCcccEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccCchhhhhcccCCCCCcccccc
Q 041121 39 SLKTLTSHSCYLRPL-SNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQ 117 (574)
Q Consensus 39 ~L~~L~l~~n~l~~~-~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~ 117 (574)
..++++.++.+++.+ .++.+++++|+|++|+|+...+.+|.++++|++|++++|.+....|.
T Consensus 11 ~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~----------------- 73 (305)
T d1xkua_ 11 HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG----------------- 73 (305)
T ss_dssp ETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTT-----------------
T ss_pred cCCEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchh-----------------
Confidence 567778888777777 34667888888888888866667899999999999999998855554
Q ss_pred ccccccccccCcEEEccCCcccccCCCCCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCccccccC
Q 041121 118 NMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKL 197 (574)
Q Consensus 118 ~~~~~~l~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~l 197 (574)
+|..++. |++|++++|+++.+... ..+.++.|++.+|.+....+..+.....++.++...|...... ..
T Consensus 74 --~f~~l~~-L~~L~l~~n~l~~l~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~------~~ 142 (305)
T d1xkua_ 74 --AFAPLVK-LERLYLSKNQLKELPEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG------IE 142 (305)
T ss_dssp --TTTTCTT-CCEEECCSSCCSBCCSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGG------BC
T ss_pred --hhhCCCc-cCEecccCCccCcCccc--hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccC------CC
Confidence 5666777 99999999998865543 2368889999999998877788888888899988887654221 11
Q ss_pred CchhhcCCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCC
Q 041121 198 PDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSL 277 (574)
Q Consensus 198 p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 277 (574)
+.. +..+++|+.+++++|.+.......++++++|++++|.+....+..+..++.+++|++++|.+++..+.+|.++++|
T Consensus 143 ~~~-~~~l~~L~~l~l~~n~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L 221 (305)
T d1xkua_ 143 NGA-FQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL 221 (305)
T ss_dssp TTG-GGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTC
T ss_pred ccc-cccccccCccccccCCccccCcccCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccc
Confidence 222 4556667777777776664433335555666666655555555555555555555555555555555555555555
Q ss_pred cEEEccCcccc
Q 041121 278 VILDLGNNSFS 288 (574)
Q Consensus 278 ~~L~L~~N~l~ 288 (574)
++|++++|.++
T Consensus 222 ~~L~L~~N~L~ 232 (305)
T d1xkua_ 222 RELHLNNNKLV 232 (305)
T ss_dssp CEEECCSSCCS
T ss_pred eeeeccccccc
Confidence 55555555554
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.93 E-value=1.2e-24 Score=210.41 Aligned_cols=244 Identities=18% Similarity=0.218 Sum_probs=145.4
Q ss_pred CcEEEccCCcccccCCC-CCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCC
Q 041121 128 LESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGT 206 (574)
Q Consensus 128 L~~L~L~~n~l~~~~~~-l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~ 206 (574)
+++|+|++|+++.+.+. |.++++|++|++++|.+....|.+|.++++|++|++++|+++.+
T Consensus 33 l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l------------------ 94 (305)
T d1xkua_ 33 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL------------------ 94 (305)
T ss_dssp CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBC------------------
T ss_pred CCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcC------------------
Confidence 55555555555544443 55555555555555555544455555555555555555555433
Q ss_pred CCCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCC--CCCCcchhcCCCCcEEEccC
Q 041121 207 SNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLS--GKLPDCWWMFDSLVILDLGN 284 (574)
Q Consensus 207 ~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~ 284 (574)
.......+..|++.+|.+.++....+.....+..++...|... ...+..|..+++|+.+++++
T Consensus 95 ---------------~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~ 159 (305)
T d1xkua_ 95 ---------------PEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD 159 (305)
T ss_dssp ---------------CSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS
T ss_pred ---------------ccchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCcccccc
Confidence 2222455666777777776666655666667777777766543 23345566777777777777
Q ss_pred cccccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCC
Q 041121 285 NSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLN 364 (574)
Q Consensus 285 N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n 364 (574)
|.+.. .+.. .+++|++|++++|
T Consensus 160 n~l~~-l~~~---------------------------------------------------------~~~~L~~L~l~~n 181 (305)
T d1xkua_ 160 TNITT-IPQG---------------------------------------------------------LPPSLTELHLDGN 181 (305)
T ss_dssp SCCCS-CCSS---------------------------------------------------------CCTTCSEEECTTS
T ss_pred CCccc-cCcc---------------------------------------------------------cCCccCEEECCCC
Confidence 76652 2211 1345667777776
Q ss_pred cccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCC
Q 041121 365 NISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAV 444 (574)
Q Consensus 365 ~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 444 (574)
..+...+..|.+++. +++|++++|.+++..
T Consensus 182 ~~~~~~~~~~~~~~~--------------------------------------------------l~~L~~s~n~l~~~~ 211 (305)
T d1xkua_ 182 KITKVDAASLKGLNN--------------------------------------------------LAKLGLSFNSISAVD 211 (305)
T ss_dssp CCCEECTGGGTTCTT--------------------------------------------------CCEEECCSSCCCEEC
T ss_pred cCCCCChhHhhcccc--------------------------------------------------ccccccccccccccc
Confidence 666555544443333 366666666666666
Q ss_pred cHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCc------cCCCCCCEEeccCCcCc
Q 041121 445 PEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSL------SPLSVLSVMDLSYNNLS 513 (574)
Q Consensus 445 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l------~~l~~L~~L~Ls~N~l~ 513 (574)
+..|.++++|++|+|++|+|+. +|..|..+++|++|+|++|+|+.+....| ..+.+|+.|+|++|+++
T Consensus 212 ~~~~~~l~~L~~L~L~~N~L~~-lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~ 285 (305)
T d1xkua_ 212 NGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285 (305)
T ss_dssp TTTGGGSTTCCEEECCSSCCSS-CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred cccccccccceeeecccccccc-cccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence 6666677777777777777763 35566667777777777777765433333 34566777888888775
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=2.2e-25 Score=213.21 Aligned_cols=223 Identities=22% Similarity=0.189 Sum_probs=116.7
Q ss_pred eEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEcc-Ccccc
Q 041121 210 GIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLG-NNSFS 288 (574)
Q Consensus 210 ~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~N~l~ 288 (574)
.+++++++++..+...+.++++|+|++|+|+++++..|..+++|++|++++|.+....+..+..+..++.++.. .+.++
T Consensus 15 ~v~c~~~~L~~iP~~ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~ 94 (284)
T d1ozna_ 15 TTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94 (284)
T ss_dssp EEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC
T ss_pred EEEcCCCCCCccCCCCCCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccc
Confidence 34555555654433335566777777777776666666666777777777777666666666666666666553 34444
Q ss_pred cCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccc
Q 041121 289 GRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISG 368 (574)
Q Consensus 289 ~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 368 (574)
...+..|+.+++| +.+++++|.+....+..+..+.+|+.+++++|.++.
T Consensus 95 ~l~~~~~~~l~~L-------------------------------~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~ 143 (284)
T d1ozna_ 95 SVDPATFHGLGRL-------------------------------HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 143 (284)
T ss_dssp CCCTTTTTTCTTC-------------------------------CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred cccchhhcccccC-------------------------------CEEecCCcccccccccccchhcccchhhhccccccc
Confidence 4444455555544 445555555444444444444455555555555543
Q ss_pred cCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhh
Q 041121 369 KIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEI 448 (574)
Q Consensus 369 ~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 448 (574)
+.+..|..++. |++|++++|.++...+.+|
T Consensus 144 i~~~~f~~~~~--------------------------------------------------L~~L~l~~N~l~~l~~~~f 173 (284)
T d1ozna_ 144 LPDDTFRDLGN--------------------------------------------------LTHLFLHGNRISSVPERAF 173 (284)
T ss_dssp CCTTTTTTCTT--------------------------------------------------CCEEECCSSCCCEECTTTT
T ss_pred cChhHhccccc--------------------------------------------------hhhcccccCcccccchhhh
Confidence 33333322222 2444444444444444444
Q ss_pred hhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCc
Q 041121 449 MDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLS 513 (574)
Q Consensus 449 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~ 513 (574)
.++++|+++++++|++++..|..|.++++|++|++++|.+.+..+..|..+++|+.|++++|++.
T Consensus 174 ~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~ 238 (284)
T d1ozna_ 174 RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (284)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred ccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence 44445555555555444444444444444555555555444444444444444444444444444
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=3.5e-25 Score=211.76 Aligned_cols=228 Identities=21% Similarity=0.184 Sum_probs=190.1
Q ss_pred cEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCccccccccc
Q 041121 230 SFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQ 309 (574)
Q Consensus 230 ~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~ 309 (574)
..+++++..++.++..- .+.+++|+|++|.|+...+.+|.++++|++|++++|.+.+..+..+..+..+
T Consensus 14 ~~v~c~~~~L~~iP~~i---p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~-------- 82 (284)
T d1ozna_ 14 VTTSCPQQGLQAVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL-------- 82 (284)
T ss_dssp CEEECCSSCCSSCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC--------
T ss_pred eEEEcCCCCCCccCCCC---CCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccc--------
Confidence 45778888887765422 2578999999999987777889999999999999999987777777776666
Q ss_pred cccCccceeeeccccccccccccceEEe-cCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCC
Q 041121 310 FNRRTVFIVWELLTTQTFESWEERFVRL-KSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDP 388 (574)
Q Consensus 310 ~~~~~~l~~l~~~~~~~~~~~~~~~l~L-~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~ 388 (574)
..+.. ..+.+....+..|.++++|++|++++|.+....+..+..
T Consensus 83 -----------------------~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~------------ 127 (284)
T d1ozna_ 83 -----------------------EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG------------ 127 (284)
T ss_dssp -----------------------CEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT------------
T ss_pred -----------------------cccccccccccccccchhhcccccCCEEecCCcccccccccccch------------
Confidence 44544 456666677778888899999999998887544444433
Q ss_pred ccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccC
Q 041121 389 TIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQN 468 (574)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 468 (574)
+.+|+.+++++|.+++..+..|..+++|++|++++|++++..
T Consensus 128 --------------------------------------~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~ 169 (284)
T d1ozna_ 128 --------------------------------------LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (284)
T ss_dssp --------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred --------------------------------------hcccchhhhccccccccChhHhccccchhhcccccCcccccc
Confidence 344689999999999777888999999999999999999999
Q ss_pred CccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcccCCCc-chhcccCcccccCCCCCCCCCC
Q 041121 469 SPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTG-TQLQSFNGSVYAGNPELCGLPL 541 (574)
Q Consensus 469 ~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~l~~~~l~~Np~~c~~~l 541 (574)
+.+|.++++|+.+++++|++++..|..|..+++|+.|++++|++++..|.. .....++.+++++|||.|+|++
T Consensus 170 ~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~ 243 (284)
T d1ozna_ 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243 (284)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred hhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccc
Confidence 999999999999999999999999999999999999999999999655544 3678899999999999999986
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=9.3e-25 Score=206.42 Aligned_cols=114 Identities=26% Similarity=0.280 Sum_probs=97.6
Q ss_pred cCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEe
Q 041121 427 LGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMD 506 (574)
Q Consensus 427 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~ 506 (574)
+++|+.|++++|.+....+..+..+.++++|++++|.++...+..+..++.|+.+++++|++++..++.|..+++|++|+
T Consensus 99 l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~ 178 (266)
T d1p9ag_ 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178 (266)
T ss_dssp CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEE
T ss_pred ccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceee
Confidence 44468888888888877777888888999999999999888888888889999999999999988888889999999999
Q ss_pred ccCCcCcccCCCc-chhcccCcccccCCCCCCCCCC
Q 041121 507 LSYNNLSGKIPTG-TQLQSFNGSVYAGNPELCGLPL 541 (574)
Q Consensus 507 Ls~N~l~~~~p~~-~~~~~l~~~~l~~Np~~c~~~l 541 (574)
|++|+|+ .+|.. .....++.++++||||.|+|.+
T Consensus 179 Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC~~ 213 (266)
T d1p9ag_ 179 LQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEI 213 (266)
T ss_dssp CCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred cccCCCc-ccChhHCCCCCCCEEEecCCCCCCCcch
Confidence 9999998 77764 6678888899999999999875
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=7.7e-23 Score=193.08 Aligned_cols=203 Identities=24% Similarity=0.253 Sum_probs=149.6
Q ss_pred cCCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEc
Q 041121 203 RFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDL 282 (574)
Q Consensus 203 ~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 282 (574)
.....+.+++.+++.++..++..++++++|+|++|.|+++.+..|..+++|++|++++|.|+.. + .+..+++|+.|++
T Consensus 7 ~~~~~~~~v~C~~~~L~~iP~~lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~L 84 (266)
T d1p9ag_ 7 SKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTLDL 84 (266)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEEEC
T ss_pred cccCCCeEEEccCCCCCeeCcCcCcCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-c-ccccccccccccc
Confidence 3445566677777777764444456788888888888877777777778888888888877633 2 3456777777777
Q ss_pred cCcccccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEcc
Q 041121 283 GNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLS 362 (574)
Q Consensus 283 ~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~ 362 (574)
++|++++. +..+..+++|+.|+++
T Consensus 85 s~N~l~~~--------------------------------------------------------~~~~~~l~~L~~L~l~ 108 (266)
T d1p9ag_ 85 SHNQLQSL--------------------------------------------------------PLLGQTLPALTVLDVS 108 (266)
T ss_dssp CSSCCSSC--------------------------------------------------------CCCTTTCTTCCEEECC
T ss_pred cccccccc--------------------------------------------------------cccccccccccccccc
Confidence 77776521 2234456677778888
Q ss_pred CCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCC
Q 041121 363 LNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNG 442 (574)
Q Consensus 363 ~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 442 (574)
+|.+....+..+.. +.+++.|++++|.++.
T Consensus 109 ~~~~~~~~~~~~~~--------------------------------------------------l~~l~~L~l~~n~l~~ 138 (266)
T d1p9ag_ 109 FNRLTSLPLGALRG--------------------------------------------------LGELQELYLKGNELKT 138 (266)
T ss_dssp SSCCCCCCSSTTTT--------------------------------------------------CTTCCEEECTTSCCCC
T ss_pred ccccceeecccccc--------------------------------------------------ccccccccccccccce
Confidence 77776444444333 3445788888888887
Q ss_pred CCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcc
Q 041121 443 AVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSG 514 (574)
Q Consensus 443 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~ 514 (574)
..+..+..+++|++|++++|++++..+..|..+++|++|+|++|+|+ .+|+.+..+++|+.|+|++|++.+
T Consensus 139 l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~C 209 (266)
T d1p9ag_ 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (266)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred eccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCC
Confidence 77777888888999999999998888888888999999999999988 567777788889999999998874
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.87 E-value=2.1e-19 Score=176.91 Aligned_cols=34 Identities=29% Similarity=0.359 Sum_probs=17.7
Q ss_pred CcEEEccCCcccccCCCCCCCCCCCEEEccCcccc
Q 041121 128 LESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLN 162 (574)
Q Consensus 128 L~~L~L~~n~l~~~~~~l~~l~~L~~L~L~~n~i~ 162 (574)
|++|++++|.+... +.+..+++|++|+++++.+.
T Consensus 100 L~~L~L~~n~l~~l-p~~~~l~~L~~L~l~~~~~~ 133 (353)
T d1jl5a_ 100 LEYLGVSNNQLEKL-PELQNSSFLKIIDVDNNSLK 133 (353)
T ss_dssp CCEEECCSSCCSSC-CCCTTCTTCCEEECCSSCCS
T ss_pred cccccccccccccc-cchhhhccceeecccccccc
Confidence 55555555555532 23444555555555555554
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.86 E-value=2.2e-19 Score=176.76 Aligned_cols=140 Identities=20% Similarity=0.205 Sum_probs=108.2
Q ss_pred CCCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCCCCcCCcccEEEccCCcCCCCCCccccCCCCCCEEEccC
Q 041121 12 HSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMF 91 (574)
Q Consensus 12 ~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 91 (574)
.++++|||+++.++.+|+ . .++|++|++++|+|+.++....+|++|++++|+++. ++.. .+.|++|++++
T Consensus 38 ~~l~~LdLs~~~L~~lp~---~---~~~L~~L~Ls~N~l~~lp~~~~~L~~L~l~~n~l~~-l~~l---p~~L~~L~L~~ 107 (353)
T d1jl5a_ 38 RQAHELELNNLGLSSLPE---L---PPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSN 107 (353)
T ss_dssp HTCSEEECTTSCCSCCCS---C---CTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CCSC---CTTCCEEECCS
T ss_pred cCCCEEEeCCCCCCCCCC---C---CCCCCEEECCCCCCcccccchhhhhhhhhhhcccch-hhhh---ccccccccccc
Confidence 378999999999998876 2 468999999999999988777899999999999884 3321 24699999999
Q ss_pred CcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccccCCCCCCCCCCCEEEccCcccccccchhhhc
Q 041121 92 NELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQ 171 (574)
Q Consensus 92 n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~ 171 (574)
|.+. .+| .+..+++ |+.|+++++.+..... ....+..+.+.++... ....+..
T Consensus 108 n~l~-~lp--------------------~~~~l~~-L~~L~l~~~~~~~~~~---~~~~l~~l~~~~~~~~--~~~~l~~ 160 (353)
T d1jl5a_ 108 NQLE-KLP--------------------ELQNSSF-LKIIDVDNNSLKKLPD---LPPSLEFIAAGNNQLE--ELPELQN 160 (353)
T ss_dssp SCCS-SCC--------------------CCTTCTT-CCEEECCSSCCSCCCC---CCTTCCEEECCSSCCS--SCCCCTT
T ss_pred cccc-ccc--------------------chhhhcc-ceeecccccccccccc---ccccccchhhcccccc--ccccccc
Confidence 9887 444 3345677 9999999998875443 3467778888776664 3455778
Q ss_pred cCCCCEEEccCCCCCcc
Q 041121 172 IFKLEITCLSQNSLTDL 188 (574)
Q Consensus 172 l~~L~~L~Ls~N~l~~l 188 (574)
++.++.+.+++|.+..+
T Consensus 161 l~~l~~L~l~~n~~~~~ 177 (353)
T d1jl5a_ 161 LPFLTAIYADNNSLKKL 177 (353)
T ss_dssp CTTCCEEECCSSCCSSC
T ss_pred cccceeccccccccccc
Confidence 88899999998876643
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=9e-19 Score=162.57 Aligned_cols=220 Identities=14% Similarity=0.036 Sum_probs=140.3
Q ss_pred CeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCC-CCcchhcCCCCcEEEccC-cc
Q 041121 209 PGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGK-LPDCWWMFDSLVILDLGN-NS 286 (574)
Q Consensus 209 ~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~-N~ 286 (574)
+.+++++..++..++..+.++++|++++|.|+.++...|.++++|++|++++|.+... .+.+|.+++.++++++.. |.
T Consensus 11 ~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~ 90 (242)
T d1xwdc1 11 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 90 (242)
T ss_dssp SEEEEESCSCSSCCSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTT
T ss_pred CEEEEeCCCCCCcCCCCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccc
Confidence 4566666666644444456777888888888777777777778888888888776643 345677777777777653 55
Q ss_pred cccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCCh-hhcCCCCCCEEEccCCc
Q 041121 287 FSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPF-QLCQFAFLQVLDLSLNN 365 (574)
Q Consensus 287 l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~-~~~~~~~L~~L~L~~n~ 365 (574)
+....+..|..+++| +.+++++|.+....+. .+..+..+..+...++.
T Consensus 91 l~~~~~~~~~~l~~L-------------------------------~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~ 139 (242)
T d1xwdc1 91 LLYINPEAFQNLPNL-------------------------------QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 139 (242)
T ss_dssp CCEECTTSEECCTTC-------------------------------CEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTT
T ss_pred ccccccccccccccc-------------------------------cccccchhhhcccccccccccccccccccccccc
Confidence 665555666666666 5566666665533221 12233344444444444
Q ss_pred ccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCc
Q 041121 366 ISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVP 445 (574)
Q Consensus 366 l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 445 (574)
+....+..|.++. ..++.|++++|+++...+
T Consensus 140 l~~i~~~~~~~~~-------------------------------------------------~~l~~L~l~~n~l~~i~~ 170 (242)
T d1xwdc1 140 IHTIERNSFVGLS-------------------------------------------------FESVILWLNKNGIQEIHN 170 (242)
T ss_dssp CCEECTTSSTTSB-------------------------------------------------SSCEEEECCSSCCCEECT
T ss_pred ccccccccccccc-------------------------------------------------ccceeeeccccccccccc
Confidence 4433333332221 235788888888875555
Q ss_pred HhhhhcCCCC-EEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccC
Q 041121 446 EEIMDLVGLV-ALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSY 509 (574)
Q Consensus 446 ~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~ 509 (574)
..|.. .+++ .+.+++|+++.+.++.|.++++|++|++++|+|+...+..|.++++|+.+++.+
T Consensus 171 ~~~~~-~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~ 234 (242)
T d1xwdc1 171 CAFNG-TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN 234 (242)
T ss_dssp TTTTT-CCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred ccccc-hhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence 54543 4444 445677888876677788888999999999988877677788877777766643
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=1.6e-21 Score=199.54 Aligned_cols=87 Identities=24% Similarity=0.122 Sum_probs=50.4
Q ss_pred cCcccEEEccCCcCCCCC----cHhhh-hcCCCCEEeCCCCcCccc----CCccccCCCCCCEEeCCCCcccccCCC---
Q 041121 427 LGLIKSLELSSNKLNGAV----PEEIM-DLVGLVALNLSRNHLTGQ----NSPKIGQLKSLDFLDLSRNQLVGGIPS--- 494 (574)
Q Consensus 427 l~~L~~L~Ls~n~l~~~~----~~~~~-~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~i~~~~~~--- 494 (574)
.++|++|+|++|.+++.. +..+. ..+.|++|+|++|+|+.. +...+..+++|++|++++|+|+.....
T Consensus 339 ~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~ 418 (460)
T d1z7xw1 339 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV 418 (460)
T ss_dssp CSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHH
T ss_pred ccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHH
Confidence 344677777777765321 12222 345577777777777632 233455567777777777777642211
Q ss_pred -Ccc-CCCCCCEEeccCCcCc
Q 041121 495 -SLS-PLSVLSVMDLSYNNLS 513 (574)
Q Consensus 495 -~l~-~l~~L~~L~Ls~N~l~ 513 (574)
.+. ....|+.|++++|.+.
T Consensus 419 ~~l~~~~~~L~~l~l~~~~~~ 439 (460)
T d1z7xw1 419 ESVRQPGCLLEQLVLYDIYWS 439 (460)
T ss_dssp HHHTSTTCCCCEEECTTCCCC
T ss_pred HHHHhCCCccCEEECCCCCCC
Confidence 121 2235777777777776
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=5.7e-18 Score=157.08 Aligned_cols=214 Identities=15% Similarity=0.181 Sum_probs=143.3
Q ss_pred cEEEccCCCCCCC-CCcCCcccEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccCchhhhhcccCCCCCcccccccc
Q 041121 41 KTLTSHSCYLRPL-SNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNM 119 (574)
Q Consensus 41 ~~L~l~~n~l~~~-~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~ 119 (574)
++++.++..++.+ ..+.+++++|++++|+|+...+.+|.++++|++|++++|.+...++..
T Consensus 11 ~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~------------------ 72 (242)
T d1xwdc1 11 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD------------------ 72 (242)
T ss_dssp SEEEEESCSCSSCCSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSS------------------
T ss_pred CEEEEeCCCCCCcCCCCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecc------------------
Confidence 5677777777766 345567888888888887666667888888888888888776443322
Q ss_pred ccccccccCcEEEccC-CcccccCCC-CCCCCCCCEEEccCcccccccc-hhhhccCCCCEEEccCCCCCcccCcccccc
Q 041121 120 SSGCLKNSLESLHLEV-NHFTGPIPD-LGGFSSMKRLYLSDNLLNGTIN-KSIGQIFKLEITCLSQNSLTDLANIQIKGK 196 (574)
Q Consensus 120 ~~~~l~~~L~~L~L~~-n~l~~~~~~-l~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~ 196 (574)
+|.+++. ++++.+.. |.+....+. |.++++|+++++++|++....+ ..+..++.+..+..+++.+..++...+.+
T Consensus 73 ~f~~l~~-l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~- 150 (242)
T d1xwdc1 73 VFSNLPK-LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG- 150 (242)
T ss_dssp SEESCTT-CCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTT-
T ss_pred ccccccc-cccccccccccccccccccccccccccccccchhhhccccccccccccccccccccccccccccccccccc-
Confidence 5666776 88887654 566666666 7888888888888888764433 23344555666666666666554433321
Q ss_pred CCchhhcCCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEE-ECCCCCCCCCCCcchhcCC
Q 041121 197 LPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYI-DLSSNLLSGKLPDCWWMFD 275 (574)
Q Consensus 197 lp~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L-~L~~n~l~~~~~~~~~~l~ 275 (574)
....++.+++++|+++.+....+. .++++++ .+++|.++...+..|.+++
T Consensus 151 ----------------------------~~~~l~~L~l~~n~l~~i~~~~~~-~~~l~~~~~l~~n~l~~l~~~~f~~l~ 201 (242)
T d1xwdc1 151 ----------------------------LSFESVILWLNKNGIQEIHNCAFN-GTQLDELNLSDNNNLEELPNDVFHGAS 201 (242)
T ss_dssp ----------------------------SBSSCEEEECCSSCCCEECTTTTT-TCCEEEEECTTCTTCCCCCTTTTTTSC
T ss_pred ----------------------------ccccceeeeccccccccccccccc-chhhhccccccccccccccHHHhcCCC
Confidence 123556677777777766665553 3444444 5677788766666788888
Q ss_pred CCcEEEccCcccccCCCcccccccCccc
Q 041121 276 SLVILDLGNNSFSGRIPDSMGFLQNIQT 303 (574)
Q Consensus 276 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 303 (574)
+|+.|++++|+++...+..|..+++|+.
T Consensus 202 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~ 229 (242)
T d1xwdc1 202 GPVILDISRTRIHSLPSYGLENLKKLRA 229 (242)
T ss_dssp CCSEEECTTSCCCCCCSSSCTTCCEEES
T ss_pred CCCEEECCCCcCCccCHHHHcCCccccc
Confidence 8888888888888655566777766633
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=2.8e-20 Score=190.18 Aligned_cols=397 Identities=16% Similarity=0.139 Sum_probs=223.6
Q ss_pred CCCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCC--------CCcCCcccEEEccCCcCCCC----CCcccc
Q 041121 12 HSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPL--------SNISSNFVSIDLSFNQLQGS----IPDSSQ 79 (574)
Q Consensus 12 ~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--------~~~~~~L~~L~Ls~n~i~~~----~~~~~~ 79 (574)
++|++||++++++++. .|.+.+..++++++|+|++|+++.. ....++|++|||++|.|+.. +...+.
T Consensus 2 ~~l~~ld~~~~~i~~~-~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~ 80 (460)
T d1z7xw1 2 LDIQSLDIQCEELSDA-RWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 80 (460)
T ss_dssp EEEEEEEEESCCCCHH-HHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CCCCEEEeeCCcCChH-HHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHh
Confidence 3577888888888774 2333566777888888888877643 12236788888888877532 222232
Q ss_pred -CCCCCCEEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccccCC-----C-CCCCCCCC
Q 041121 80 -HMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIP-----D-LGGFSSMK 152 (574)
Q Consensus 80 -~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~-----~-l~~l~~L~ 152 (574)
..++|++|++++|+++......+.. ++..++. |++|++++|.+..... . ........
T Consensus 81 ~~~~~L~~L~L~~n~it~~~~~~l~~---------------~l~~~~~-L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~ 144 (460)
T d1z7xw1 81 TPSCKIQKLSLQNCCLTGAGCGVLSS---------------TLRTLPT-LQELHLSDNLLGDAGLQLLCEGLLDPQCRLE 144 (460)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHH---------------HTTSCTT-CCEEECCSSBCHHHHHHHHHHHHTSTTCCCC
T ss_pred cCCCCCCEEECCCCCccccccccccc---------------hhhcccc-ccccccccccchhhhhhhhhhcccccccccc
Confidence 2356888888888776443333322 4455666 8888888887653211 1 11223344
Q ss_pred EEEccCcccccc----cchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCC----
Q 041121 153 RLYLSDNLLNGT----INKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPP---- 224 (574)
Q Consensus 153 ~L~L~~n~i~~~----~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~---- 224 (574)
........+... ....+.....++.++++.+.+.......+... . .........+++..+.+......
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~---l-~~~~~~~~~l~~~~~~~~~~~~~~~~~ 220 (460)
T d1z7xw1 145 KLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQG---L-KDSPCQLEALKLESCGVTSDNCRDLCG 220 (460)
T ss_dssp EEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHH---H-HHSCCCCCEEECTTSCCBTTHHHHHHH
T ss_pred cccccccccchhhhcccccccccccccccccccccccccccccccccc---c-ccccccccccccccccccchhhhcccc
Confidence 444444333211 12334456677777777765442211111000 0 11223444556655544321100
Q ss_pred ---CCCCCcEEEcCCCcccccc-----cccccCCCCccEEECCCCCCCCC----CCcchhcCCCCcEEEccCcccccCCC
Q 041121 225 ---LPSNSSFLNLSKNRFSRSI-----SLCSISGSKLTYIDLSSNLLSGK----LPDCWWMFDSLVILDLGNNSFSGRIP 292 (574)
Q Consensus 225 ---~~~~L~~L~L~~n~i~~~~-----~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~ 292 (574)
....++.+++.+|.+.... .........++.+++++|.+... ...++...+.++.+++++|.+.+...
T Consensus 221 ~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~ 300 (460)
T d1z7xw1 221 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 300 (460)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH
T ss_pred cccccccccccchhhccccccccchhhccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 1456777777777654321 12233456788888888877532 12335567788888888887763221
Q ss_pred cccc-----cccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCCh----hhcCCCCCCEEEccC
Q 041121 293 DSMG-----FLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPF----QLCQFAFLQVLDLSL 363 (574)
Q Consensus 293 ~~~~-----~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~----~~~~~~~L~~L~L~~ 363 (574)
..+. ....| +.++++++.+...... .+...++|++|+|++
T Consensus 301 ~~l~~~l~~~~~~L-------------------------------~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~ 349 (460)
T d1z7xw1 301 RLLCETLLEPGCQL-------------------------------ESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISN 349 (460)
T ss_dssp HHHHHHHTSTTCCC-------------------------------CEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCS
T ss_pred chhhcccccccccc-------------------------------ccccccccchhhhhhhhcccccccccchhhhheee
Confidence 1111 11223 6667777766543322 234556788888888
Q ss_pred CcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCC
Q 041121 364 NNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGA 443 (574)
Q Consensus 364 n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 443 (574)
|++++.....+.. .+ ....+.|++|+|++|.|++.
T Consensus 350 N~i~~~g~~~l~~--~l-------------------------------------------~~~~~~L~~L~Ls~n~i~~~ 384 (460)
T d1z7xw1 350 NRLEDAGVRELCQ--GL-------------------------------------------GQPGSVLRVLWLADCDVSDS 384 (460)
T ss_dssp SBCHHHHHHHHHH--HH-------------------------------------------TSTTCCCCEEECTTSCCCHH
T ss_pred ecccCcccchhhh--hh-------------------------------------------hcccCCCCEEECCCCCCChH
Confidence 8776422111100 00 01234479999999999743
Q ss_pred ----CcHhhhhcCCCCEEeCCCCcCcccCCcc----cc-CCCCCCEEeCCCCcccccCCCCc----cCCCCCCEE
Q 041121 444 ----VPEEIMDLVGLVALNLSRNHLTGQNSPK----IG-QLKSLDFLDLSRNQLVGGIPSSL----SPLSVLSVM 505 (574)
Q Consensus 444 ----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~-~l~~L~~L~L~~N~i~~~~~~~l----~~l~~L~~L 505 (574)
++..+..+++|++|+|++|+|+...... +. +...|+.|++.+|.+.......+ ...++|+.|
T Consensus 385 ~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~~~~~l~~~ 459 (460)
T d1z7xw1 385 SCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459 (460)
T ss_dssp HHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred HHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHHHHHHHhCCCCEEe
Confidence 3445677899999999999998543322 22 34579999999999885433332 233555544
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.74 E-value=1.8e-17 Score=151.92 Aligned_cols=189 Identities=20% Similarity=0.186 Sum_probs=133.5
Q ss_pred ccccccccCcEEEccCCcccccCCCCCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCccccccCCc
Q 041121 120 SSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPD 199 (574)
Q Consensus 120 ~~~~l~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~ 199 (574)
.+..+.+ |++|++.+|++++. +.+..+++|++|++++|.+.+..+ +..+++|+++++++|.++.++.
T Consensus 36 ~~~~l~~-L~~L~l~~~~i~~l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i~~--------- 102 (227)
T d1h6ua2 36 TQADLDG-ITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVSA--------- 102 (227)
T ss_dssp CHHHHHT-CCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCGG---------
T ss_pred CHHHcCC-cCEEECCCCCCCcc-hhHhcCCCCcEeecCCceeecccc--cccccccccccccccccccccc---------
Confidence 4566777 99999999999865 568899999999999999986543 8899999999999998876542
Q ss_pred hhhcCCCCCCeEeccCCcccCCCCC-CCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCc
Q 041121 200 LSSRFGTSNPGIDISSNHFEGPIPP-LPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLV 278 (574)
Q Consensus 200 ~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 278 (574)
+..+++|+.++++++...+..+- ..+.+..+.++++.+....+ +...++|++|++++|.+... ..+.++++|+
T Consensus 103 --l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~ 176 (227)
T d1h6ua2 103 --IAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL--TPLANLSKLT 176 (227)
T ss_dssp --GTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCC
T ss_pred --ccccccccccccccccccccchhccccchhhhhchhhhhchhhh--hccccccccccccccccccc--hhhcccccce
Confidence 35677888888888877654432 25667777777777665433 34567777777777777532 2366777777
Q ss_pred EEEccCcccccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCE
Q 041121 279 ILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQV 358 (574)
Q Consensus 279 ~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~ 358 (574)
+|++++|++++. + .++.+++| +++++++|+++... .+..+++|+.
T Consensus 177 ~L~Ls~n~l~~l-~-~l~~l~~L-------------------------------~~L~Ls~N~lt~i~--~l~~l~~L~~ 221 (227)
T d1h6ua2 177 TLKADDNKISDI-S-PLASLPNL-------------------------------IEVHLKNNQISDVS--PLANTSNLFI 221 (227)
T ss_dssp EEECCSSCCCCC-G-GGGGCTTC-------------------------------CEEECTTSCCCBCG--GGTTCTTCCE
T ss_pred ecccCCCccCCC-h-hhcCCCCC-------------------------------CEEECcCCcCCCCc--ccccCCCCCE
Confidence 777777777642 2 25555655 66666666666432 2556666666
Q ss_pred EEcc
Q 041121 359 LDLS 362 (574)
Q Consensus 359 L~L~ 362 (574)
|+++
T Consensus 222 L~ls 225 (227)
T d1h6ua2 222 VTLT 225 (227)
T ss_dssp EEEE
T ss_pred EEee
Confidence 6665
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.74 E-value=1.7e-17 Score=152.02 Aligned_cols=78 Identities=22% Similarity=0.298 Sum_probs=56.8
Q ss_pred ccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEE
Q 041121 426 TLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVM 505 (574)
Q Consensus 426 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L 505 (574)
.+++|+.|++++|.+.+. ..++++++|++|+|++|++++. + .+.++++|++|++++|+++++.| +..+++|+.|
T Consensus 149 ~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L 222 (227)
T d1h6ua2 149 GLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIV 222 (227)
T ss_dssp GCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEE
T ss_pred cccccccccccccccccc--hhhcccccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCCCCcc--cccCCCCCEE
Confidence 455578888888877632 2377788888888888888753 2 37778888888888888875543 7778888888
Q ss_pred eccC
Q 041121 506 DLSY 509 (574)
Q Consensus 506 ~Ls~ 509 (574)
++++
T Consensus 223 ~lsn 226 (227)
T d1h6ua2 223 TLTN 226 (227)
T ss_dssp EEEE
T ss_pred EeeC
Confidence 8763
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.72 E-value=6.5e-18 Score=150.31 Aligned_cols=84 Identities=26% Similarity=0.380 Sum_probs=48.2
Q ss_pred ccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccC
Q 041121 430 IKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSY 509 (574)
Q Consensus 430 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~ 509 (574)
|++|++++|.+....+..|..+++|++|+|++|+|+++.+++|.++++|++|+|++|+|+.+.++.|..+++|++|+|++
T Consensus 56 L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~ 135 (192)
T d1w8aa_ 56 LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred EeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccc
Confidence 35555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CcCc
Q 041121 510 NNLS 513 (574)
Q Consensus 510 N~l~ 513 (574)
|++.
T Consensus 136 N~~~ 139 (192)
T d1w8aa_ 136 NPFN 139 (192)
T ss_dssp CCBC
T ss_pred cccc
Confidence 5555
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.72 E-value=2.2e-17 Score=146.84 Aligned_cols=64 Identities=27% Similarity=0.327 Sum_probs=32.2
Q ss_pred ccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCccc
Q 041121 426 TLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLV 489 (574)
Q Consensus 426 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~ 489 (574)
.+++|++|+|++|+|+...+.+|.++++|++|+|++|+|+++.+++|..+++|++|+|++|.+.
T Consensus 76 ~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~ 139 (192)
T d1w8aa_ 76 GASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp TCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence 3444455555555555444444555555555555555555444445555555555555555444
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.70 E-value=8.3e-17 Score=145.18 Aligned_cols=146 Identities=25% Similarity=0.312 Sum_probs=76.4
Q ss_pred CCCCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCCCCc--CCcccEEEccCCcCCCCCCccccCCCCCCEEE
Q 041121 11 LHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNI--SSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLS 88 (574)
Q Consensus 11 l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 88 (574)
+..|++|++++|.++.++. +..+++|++|++++|+++++..+ .++|++|++++|+++. ++ .+..+++|+.|+
T Consensus 45 L~~L~~L~l~~~~i~~l~~----l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~ 118 (210)
T d1h6ta2 45 LNSIDQIIANNSDIKSVQG----IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS 118 (210)
T ss_dssp HHTCCEEECTTSCCCCCTT----GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred hcCccEEECcCCCCCCchh----HhhCCCCCEEeCCCccccCccccccCccccccccccccccc-cc-cccccccccccc
Confidence 4455666666666655532 45556666666666665555222 2455555555555553 22 355555555555
Q ss_pred ccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccccCCCCCCCCCCCEEEccCcccccccchh
Q 041121 89 LMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKS 168 (574)
Q Consensus 89 L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~ 168 (574)
+++|.+.. .+ .+..++. ++.+++++|.+++ .+.+..+++|+++++++|++++.. .
T Consensus 119 l~~~~~~~-~~--------------------~l~~l~~-l~~l~~~~n~l~~-~~~~~~l~~L~~l~l~~n~l~~i~--~ 173 (210)
T d1h6ta2 119 LEHNGISD-IN--------------------GLVHLPQ-LESLYLGNNKITD-ITVLSRLTKLDTLSLEDNQISDIV--P 173 (210)
T ss_dssp CTTSCCCC-CG--------------------GGGGCTT-CCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCCCG--G
T ss_pred cccccccc-cc--------------------ccccccc-ccccccccccccc-cccccccccccccccccccccccc--c
Confidence 55555441 11 2334444 5666666665553 222445556666666666555322 2
Q ss_pred hhccCCCCEEEccCCCCCc
Q 041121 169 IGQIFKLEITCLSQNSLTD 187 (574)
Q Consensus 169 ~~~l~~L~~L~Ls~N~l~~ 187 (574)
+.++++|++|++++|+|++
T Consensus 174 l~~l~~L~~L~Ls~N~i~~ 192 (210)
T d1h6ta2 174 LAGLTKLQNLYLSKNHISD 192 (210)
T ss_dssp GTTCTTCCEEECCSSCCCB
T ss_pred ccCCCCCCEEECCCCCCCC
Confidence 5555666666666665553
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.69 E-value=1.9e-16 Score=141.59 Aligned_cols=146 Identities=26% Similarity=0.330 Sum_probs=67.0
Q ss_pred CCCCcEEEccCCCCCCCCCc--CCcccEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccCchhhhhcccCCCCCccc
Q 041121 37 LHSLKTLTSHSCYLRPLSNI--SSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLA 114 (574)
Q Consensus 37 l~~L~~L~l~~n~l~~~~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~ 114 (574)
++++++|++++|+++.+.++ .++|++|++++|++++..+ +.++++|++|++++|.+.. ++
T Consensus 39 l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~-~~--------------- 100 (199)
T d2omxa2 39 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-IT--------------- 100 (199)
T ss_dssp HTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG---------------
T ss_pred hcCCCEEECCCCCCCCccccccCCCcCcCccccccccCccc--ccCCccccccccccccccc-cc---------------
Confidence 34455555555555444222 2455555555555543222 5555555555555555442 11
Q ss_pred cccccccccccccCcEEEccCCcccccCCCCCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCcccc
Q 041121 115 IIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIK 194 (574)
Q Consensus 115 ~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~ 194 (574)
.+.+++. |+.|++++|..... +.+.++++|++|++++|++... ..+..+++|++|++++|++++++.
T Consensus 101 -----~l~~l~~-L~~L~l~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~--~~l~~~~~L~~L~l~~n~l~~l~~---- 167 (199)
T d2omxa2 101 -----PLANLTN-LTGLTLFNNQITDI-DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDLKP---- 167 (199)
T ss_dssp -----GGTTCTT-CSEEECCSSCCCCC-GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCCGG----
T ss_pred -----ccccccc-cccccccccccccc-cccchhhhhHHhhhhhhhhccc--ccccccccccccccccccccCCcc----
Confidence 2233344 55555555444421 2244445555555555554321 234445555555555554443221
Q ss_pred ccCCchhhcCCCCCCeEeccCCcccC
Q 041121 195 GKLPDLSSRFGTSNPGIDISSNHFEG 220 (574)
Q Consensus 195 ~~lp~~~~~~~~~L~~L~l~~n~l~~ 220 (574)
+..+++|++|++++|+++.
T Consensus 168 -------l~~l~~L~~L~ls~N~i~~ 186 (199)
T d2omxa2 168 -------LANLTTLERLDISSNKVSD 186 (199)
T ss_dssp -------GTTCTTCCEEECCSSCCCC
T ss_pred -------ccCCCCCCEEECCCCCCCC
Confidence 2344455555555555443
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.68 E-value=1.9e-16 Score=142.72 Aligned_cols=164 Identities=23% Similarity=0.208 Sum_probs=91.0
Q ss_pred CcccEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCc
Q 041121 58 SNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNH 137 (574)
Q Consensus 58 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~ 137 (574)
.+|++|++++|.++... .+..+++|++|++++|++++. + .+..+++ |++|++++|+
T Consensus 46 ~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l-~--------------------~~~~l~~-L~~L~l~~n~ 101 (210)
T d1h6ta2 46 NSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDI-K--------------------PLANLKN-LGWLFLDENK 101 (210)
T ss_dssp HTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCC-G--------------------GGTTCTT-CCEEECCSSC
T ss_pred cCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCc-c--------------------ccccCcc-cccccccccc
Confidence 45566666666655322 255566666666666655532 1 1233444 6666666665
Q ss_pred ccccCCCCCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCc
Q 041121 138 FTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNH 217 (574)
Q Consensus 138 l~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~ 217 (574)
+++. +.+.++++|+.|++++|.+.. ...+..++.++.+++++|.+++... ...
T Consensus 102 i~~l-~~l~~l~~L~~L~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~~~~-----------~~~------------- 154 (210)
T d1h6ta2 102 VKDL-SSLKDLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITDITV-----------LSR------------- 154 (210)
T ss_dssp CCCG-GGGTTCTTCCEEECTTSCCCC--CGGGGGCTTCCEEECCSSCCCCCGG-----------GGG-------------
T ss_pred cccc-ccccccccccccccccccccc--ccccccccccccccccccccccccc-----------ccc-------------
Confidence 5532 235555566666666555542 2345555555555555555443211 111
Q ss_pred ccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccC
Q 041121 218 FEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGN 284 (574)
Q Consensus 218 l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 284 (574)
+++|+.+++++|.+.++.+ +..+++|++|++++|.++. ++ .+.++++|++|+|++
T Consensus 155 --------l~~L~~l~l~~n~l~~i~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 155 --------LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS 209 (210)
T ss_dssp --------CTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred --------ccccccccccccccccccc--ccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence 3555666666666655433 4567778888888887763 33 477777888887763
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.68 E-value=4.1e-16 Score=139.34 Aligned_cols=173 Identities=19% Similarity=0.199 Sum_probs=137.2
Q ss_pred CCCCCccccccccccccccccCcEEEccCCcccccCCCCCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCC
Q 041121 107 NLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLT 186 (574)
Q Consensus 107 ~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 186 (574)
.++.+.+++.. ....+++ +++|++++|.++. .+++..+++|++|++++|++++..+ +.++++|++|++++|.+.
T Consensus 24 ~l~~~~~~~~~--~~~~l~~-l~~L~l~~~~i~~-l~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~ 97 (199)
T d2omxa2 24 VLGKTNVTDTV--SQTDLDQ-VTTLQADRLGIKS-IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA 97 (199)
T ss_dssp HTTCSSTTSEE--CHHHHTT-CCEEECTTSCCCC-CTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred HhCCCCCCCcc--CHHHhcC-CCEEECCCCCCCC-ccccccCCCcCcCccccccccCccc--ccCCcccccccccccccc
Confidence 34445555432 2345777 9999999999985 4458889999999999999986543 899999999999999887
Q ss_pred cccCccccccCCchhhcCCCCCCeEeccCCcccCCCC-CCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCC
Q 041121 187 DLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIP-PLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSG 265 (574)
Q Consensus 187 ~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~ 265 (574)
.++. +..++.|+.+++++|......+ ..+++|+.+++++|.+..+. .+..++++++|++.+|++++
T Consensus 98 ~~~~-----------l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~l~~~~~L~~L~l~~n~l~~ 164 (199)
T d2omxa2 98 DITP-----------LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLNFSSNQVTD 164 (199)
T ss_dssp CCGG-----------GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCC
T ss_pred cccc-----------cccccccccccccccccccccccchhhhhHHhhhhhhhhcccc--cccccccccccccccccccC
Confidence 5542 4678899999999998886543 23789999999999998654 36678999999999999985
Q ss_pred CCCcchhcCCCCcEEEccCcccccCCCcccccccCcc
Q 041121 266 KLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQ 302 (574)
Q Consensus 266 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 302 (574)
. ..+.++++|+.|++++|++++. + .++.+++|+
T Consensus 165 l--~~l~~l~~L~~L~ls~N~i~~i-~-~l~~L~~L~ 197 (199)
T d2omxa2 165 L--KPLANLTTLERLDISSNKVSDI-S-VLAKLTNLE 197 (199)
T ss_dssp C--GGGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCS
T ss_pred C--ccccCCCCCCEEECCCCCCCCC-c-cccCCCCCC
Confidence 4 3488999999999999999853 3 467777774
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=3.4e-15 Score=126.96 Aligned_cols=111 Identities=22% Similarity=0.236 Sum_probs=97.9
Q ss_pred ccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCC-cCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEecc
Q 041121 430 IKSLELSSNKLNGAVPEEIMDLVGLVALNLSRN-HLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLS 508 (574)
Q Consensus 430 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls 508 (574)
.+.++.+++.+. ..|..+.++++|++|++++| .|+.+.+.+|.++++|+.|++++|+|+.+.+++|..+++|++|+|+
T Consensus 10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls 88 (156)
T d2ifga3 10 SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (156)
T ss_dssp SSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence 367899999987 67788889999999999876 5998888899999999999999999999999999999999999999
Q ss_pred CCcCcccCCCc-chhcccCcccccCCCCCCCCCCC
Q 041121 509 YNNLSGKIPTG-TQLQSFNGSVYAGNPELCGLPLP 542 (574)
Q Consensus 509 ~N~l~~~~p~~-~~~~~l~~~~l~~Np~~c~~~l~ 542 (574)
+|+|+ .+|.. +....+..+++++|||.|+|.+.
T Consensus 89 ~N~l~-~l~~~~~~~~~l~~L~L~~Np~~C~C~~~ 122 (156)
T d2ifga3 89 FNALE-SLSWKTVQGLSLQELVLSGNPLHCSCALR 122 (156)
T ss_dssp SSCCS-CCCSTTTCSCCCCEEECCSSCCCCCGGGH
T ss_pred CCCCc-ccChhhhccccccccccCCCcccCCchHH
Confidence 99999 66654 55667889999999999999763
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.56 E-value=3.7e-16 Score=152.68 Aligned_cols=253 Identities=16% Similarity=0.126 Sum_probs=142.0
Q ss_pred hhhhhhcCCCCCcEEECCCCCCCCC--CchhhhcCCCCCCcEEEccCCCCCCCC--------------CcCCcccEEEcc
Q 041121 3 KLLMRSLRLHSLRYLNLEENNLANC--SDWFQVIGKLHSLKTLTSHSCYLRPLS--------------NISSNFVSIDLS 66 (574)
Q Consensus 3 ~l~~~l~~l~~L~~L~Ls~n~i~~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~--------------~~~~~L~~L~Ls 66 (574)
.+.+.+.+...|++|+|++|.|... ..+.+.+...++|+.|+++++...... ...++|++|+|+
T Consensus 22 ~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~ 101 (344)
T d2ca6a1 22 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 101 (344)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccc
Confidence 3556778888999999999988665 344456778899999999887655431 112567777777
Q ss_pred CCcCCCC----CCccccCCCCCCEEEccCCcCccCchhhhhcc-cCCCCCccccccccccccccccCcEEEccCCccccc
Q 041121 67 FNQLQGS----IPDSSQHMVYLEHLSLMFNELEGGIPKFFGNM-LNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGP 141 (574)
Q Consensus 67 ~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~ 141 (574)
+|.++.. +...+..+++|++|++++|.+.......++.. ..+. ... .....+. |+.+.+++|++...
T Consensus 102 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~------~~~-~~~~~~~-L~~l~l~~n~i~~~ 173 (344)
T d2ca6a1 102 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELA------VNK-KAKNAPP-LRSIICGRNRLENG 173 (344)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHH------HHH-HHHTCCC-CCEEECCSSCCTGG
T ss_pred ccccccccccchhhhhcccccchheecccccccccccccccccccccc------ccc-ccccCcc-cceeeccccccccc
Confidence 7777643 22334456777777777776642222222110 0000 000 1112333 66666666665421
Q ss_pred C----CC-CCCCCCCCEEEccCcccccc-----cchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeE
Q 041121 142 I----PD-LGGFSSMKRLYLSDNLLNGT-----INKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGI 211 (574)
Q Consensus 142 ~----~~-l~~l~~L~~L~L~~n~i~~~-----~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L 211 (574)
. .. +...+.|++|++++|+|... ....+..+++|+.|++++|.++......+... +..
T Consensus 174 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~-----l~~------- 241 (344)
T d2ca6a1 174 SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA-----LKS------- 241 (344)
T ss_dssp GHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH-----GGG-------
T ss_pred ccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccccc-----ccc-------
Confidence 1 11 33445666666666665431 22345556666666666665543211111100 122
Q ss_pred eccCCcccCCCCCCCCCCcEEEcCCCcccccccccc------cCCCCccEEECCCCCCCCC----CCcchh-cCCCCcEE
Q 041121 212 DISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCS------ISGSKLTYIDLSSNLLSGK----LPDCWW-MFDSLVIL 280 (574)
Q Consensus 212 ~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~------~~~~~L~~L~L~~n~l~~~----~~~~~~-~l~~L~~L 280 (574)
.++|++|+|++|.|++.....+ ...+.|++|++++|.|+.. +...+. ..++|+.|
T Consensus 242 --------------~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L 307 (344)
T d2ca6a1 242 --------------WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 307 (344)
T ss_dssp --------------CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEE
T ss_pred --------------cccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEE
Confidence 3556666666666654333222 1346788888888887632 122332 56788999
Q ss_pred EccCccccc
Q 041121 281 DLGNNSFSG 289 (574)
Q Consensus 281 ~L~~N~l~~ 289 (574)
++++|.+..
T Consensus 308 ~l~~N~~~~ 316 (344)
T d2ca6a1 308 ELNGNRFSE 316 (344)
T ss_dssp ECTTSBSCT
T ss_pred ECCCCcCCC
Confidence 999988863
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.52 E-value=3.7e-14 Score=115.22 Aligned_cols=63 Identities=22% Similarity=0.288 Sum_probs=31.8
Q ss_pred cccccCcEEEccCCcccccCCCCCCCCCCCEEEccCccccccc-chhhhccCCCCEEEccCCCCCc
Q 041121 123 CLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTI-NKSIGQIFKLEITCLSQNSLTD 187 (574)
Q Consensus 123 ~l~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~ 187 (574)
.+++ |+.|++++|.+++. +.+..+++|++|++++|+|+... ...+..+++|++|++++|+++.
T Consensus 41 ~l~~-L~~L~l~~N~i~~l-~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~ 104 (124)
T d1dcea3 41 ALRC-LEVLQASDNALENV-DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104 (124)
T ss_dssp GCTT-CCEEECCSSCCCCC-GGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred hhhc-cccccccccccccc-CccccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence 3444 55555555555532 23555555555555555554332 1345555555555555555543
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=7.6e-15 Score=125.59 Aligned_cols=129 Identities=16% Similarity=0.089 Sum_probs=80.7
Q ss_pred hcCCCCCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCCCCcCCcccEEEccCCcCCCCCCccccCCCCCCEE
Q 041121 8 SLRLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHL 87 (574)
Q Consensus 8 l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 87 (574)
|.+..++++|+|++|+|+.++. .+..+++|++|++++|+|+.+ +.+..+++|++|
T Consensus 14 ~~n~~~lr~L~L~~n~I~~i~~---~~~~l~~L~~L~Ls~N~i~~l----------------------~~~~~l~~L~~L 68 (162)
T d1a9na_ 14 YTNAVRDRELDLRGYKIPVIEN---LGATLDQFDAIDFSDNEIRKL----------------------DGFPLLRRLKTL 68 (162)
T ss_dssp EECTTSCEEEECTTSCCCSCCC---GGGGTTCCSEEECCSSCCCEE----------------------CCCCCCSSCCEE
T ss_pred ccCcCcCcEEECCCCCCCccCc---cccccccCCEEECCCCCCCcc----------------------CCcccCcchhhh
Confidence 4566667777777777776654 445566666666666655432 235667777777
Q ss_pred EccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccccCC--CCCCCCCCCEEEccCccccccc
Q 041121 88 SLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIP--DLGGFSSMKRLYLSDNLLNGTI 165 (574)
Q Consensus 88 ~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~--~l~~l~~L~~L~L~~n~i~~~~ 165 (574)
++++|+++...+. .+..+++ |+.|++++|++..... .+..+++|++|++++|.++...
T Consensus 69 ~ls~N~i~~l~~~-------------------~~~~l~~-L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~ 128 (162)
T d1a9na_ 69 LVNNNRICRIGEG-------------------LDQALPD-LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 128 (162)
T ss_dssp ECCSSCCCEECSC-------------------HHHHCTT-CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGST
T ss_pred hcccccccCCCcc-------------------ccccccc-cccceeccccccccccccccccccccchhhcCCCcccccc
Confidence 7777777632221 3344566 7777777777765432 2667777777777777776332
Q ss_pred ---chhhhccCCCCEEEcc
Q 041121 166 ---NKSIGQIFKLEITCLS 181 (574)
Q Consensus 166 ---~~~~~~l~~L~~L~Ls 181 (574)
+..+..+++|++||..
T Consensus 129 ~~r~~~i~~lp~L~~LD~~ 147 (162)
T d1a9na_ 129 HYRLYVIYKVPQVRVLDFQ 147 (162)
T ss_dssp THHHHHHHHCTTCSEETTE
T ss_pred chHHHHHHHCCCcCeeCCC
Confidence 2356778888877643
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.49 E-value=6.4e-14 Score=113.76 Aligned_cols=115 Identities=22% Similarity=0.211 Sum_probs=79.6
Q ss_pred cEEEccCCCCCCCCCcC--CcccEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccCchhhhhcccCCCCCccccccc
Q 041121 41 KTLTSHSCYLRPLSNIS--SNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQN 118 (574)
Q Consensus 41 ~~L~l~~n~l~~~~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~ 118 (574)
|+|++++|+++.+..+. +.|++|++++|.++ .+|..+..+++|++|++++|+++. +|
T Consensus 1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~------------------- 59 (124)
T d1dcea3 1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD------------------- 59 (124)
T ss_dssp SEEECTTSCCSSCCCGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-------------------
T ss_pred CEEEcCCCCCCCCcccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-------------------
Confidence 57788888887774443 67888888888887 456677778888888888887773 33
Q ss_pred cccccccccCcEEEccCCcccccCC-C-CCCCCCCCEEEccCccccccc---chhhhccCCCCEE
Q 041121 119 MSSGCLKNSLESLHLEVNHFTGPIP-D-LGGFSSMKRLYLSDNLLNGTI---NKSIGQIFKLEIT 178 (574)
Q Consensus 119 ~~~~~l~~~L~~L~L~~n~l~~~~~-~-l~~l~~L~~L~L~~n~i~~~~---~~~~~~l~~L~~L 178 (574)
.+..+++ |++|++++|+++.... . +..+++|++|++++|.+.... ...+..+|+|+.|
T Consensus 60 -~~~~l~~-L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L 122 (124)
T d1dcea3 60 -GVANLPR-LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122 (124)
T ss_dssp -GGTTCSS-CCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred -ccccccc-cCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence 3455666 8888888888876543 2 777788888888888876332 2334456666654
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=1.5e-14 Score=136.67 Aligned_cols=169 Identities=18% Similarity=0.173 Sum_probs=101.7
Q ss_pred ccccCcEEEccCCcccccC-CC-CCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCC-CCCcccCccccccCCch
Q 041121 124 LKNSLESLHLEVNHFTGPI-PD-LGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQN-SLTDLANIQIKGKLPDL 200 (574)
Q Consensus 124 l~~~L~~L~L~~n~l~~~~-~~-l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~~lp~~ 200 (574)
..+ |++|+++++.+.... .. +..+++|++|+++++.+.+..+..+..+++|++|+++++ .+++.. +...
T Consensus 45 ~~~-L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~-------l~~l 116 (284)
T d2astb2 45 PFR-VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA-------LQTL 116 (284)
T ss_dssp CBC-CCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHH-------HHHH
T ss_pred CCC-CCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccc-------cchh
Confidence 345 899999988876432 33 778899999999999888777788888899999999885 444211 1111
Q ss_pred hhcCCCCCCeEeccCCc-ccCC-----CCCCCCCCcEEEcCCCc--cccccccc-ccCCCCccEEECCCC-CCCCCCCcc
Q 041121 201 SSRFGTSNPGIDISSNH-FEGP-----IPPLPSNSSFLNLSKNR--FSRSISLC-SISGSKLTYIDLSSN-LLSGKLPDC 270 (574)
Q Consensus 201 ~~~~~~~L~~L~l~~n~-l~~~-----~~~~~~~L~~L~L~~n~--i~~~~~~~-~~~~~~L~~L~L~~n-~l~~~~~~~ 270 (574)
...+++|++|++++|. ++.. +....+.|+.|+++++. ++...... ...+++|++|++++| .+++.....
T Consensus 117 -~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~ 195 (284)
T d2astb2 117 -LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE 195 (284)
T ss_dssp -HHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG
T ss_pred -hHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhh
Confidence 3456778888887753 3211 11113567777776542 32211111 124566777777664 355444555
Q ss_pred hhcCCCCcEEEccCc-ccccCCCcccccccCc
Q 041121 271 WWMFDSLVILDLGNN-SFSGRIPDSMGFLQNI 301 (574)
Q Consensus 271 ~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L 301 (574)
+..+++|++|+++++ .+++.....++.+++|
T Consensus 196 l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L 227 (284)
T d2astb2 196 FFQLNYLQHLSLSRCYDIIPETLLELGEIPTL 227 (284)
T ss_dssp GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred hcccCcCCEEECCCCCCCChHHHHHHhcCCCC
Confidence 666667777777663 4444333334444444
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=2.8e-14 Score=134.71 Aligned_cols=60 Identities=15% Similarity=-0.062 Sum_probs=41.5
Q ss_pred CCCCcEEEcCCC-cccccccccccCCCCccEEECCCC-CCCCCCCcchhcCCCCcEEEccCc
Q 041121 226 PSNSSFLNLSKN-RFSRSISLCSISGSKLTYIDLSSN-LLSGKLPDCWWMFDSLVILDLGNN 285 (574)
Q Consensus 226 ~~~L~~L~L~~n-~i~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N 285 (574)
.++|++|++++| .+++.....+..+++|++|++++| .+++.....+..+++|+.|+++++
T Consensus 174 ~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 174 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred cccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence 356666666664 355444455667788888888885 566555556778888888888876
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=8.2e-14 Score=119.06 Aligned_cols=111 Identities=23% Similarity=0.159 Sum_probs=51.1
Q ss_pred hcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCc
Q 041121 350 LCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGL 429 (574)
Q Consensus 350 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 429 (574)
+.++..+++|+|++|+|+. ++..+..+++|+.+++++|.+..++ .+..+++
T Consensus 14 ~~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~l~----------------------------~~~~l~~ 64 (162)
T d1a9na_ 14 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKLD----------------------------GFPLLRR 64 (162)
T ss_dssp EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEEC----------------------------CCCCCSS
T ss_pred ccCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCccC----------------------------CcccCcc
Confidence 4455667777777777763 3444444444433333333322110 0122333
Q ss_pred ccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCC-ccccCCCCCCEEeCCCCccc
Q 041121 430 IKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNS-PKIGQLKSLDFLDLSRNQLV 489 (574)
Q Consensus 430 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~i~ 489 (574)
|++|++++|.++...+..+..+++|++|++++|+|+.... ..+..+++|++|++++|+++
T Consensus 65 L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~ 125 (162)
T d1a9na_ 65 LKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 125 (162)
T ss_dssp CCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred hhhhhcccccccCCCccccccccccccceeccccccccccccccccccccchhhcCCCccc
Confidence 4555555555543333334445555555555555543211 23444455555555555544
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.44 E-value=6.1e-14 Score=136.66 Aligned_cols=223 Identities=15% Similarity=0.089 Sum_probs=156.5
Q ss_pred hhhhhhcCCCCCcEEECCCCCCCCC--------CchhhhcCCCCCCcEEEccCCCCCCC--C------CcCCcccEEEcc
Q 041121 3 KLLMRSLRLHSLRYLNLEENNLANC--------SDWFQVIGKLHSLKTLTSHSCYLRPL--S------NISSNFVSIDLS 66 (574)
Q Consensus 3 ~l~~~l~~l~~L~~L~Ls~n~i~~~--------~~~~~~~~~l~~L~~L~l~~n~l~~~--~------~~~~~L~~L~Ls 66 (574)
.+.+.+...++|+.|+++++..... ..+.+++..+++|++|++++|.++.. . .-.+.|++|+++
T Consensus 50 ~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~ 129 (344)
T d2ca6a1 50 WLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLH 129 (344)
T ss_dssp HHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECC
T ss_pred HHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccchhhhhcccccchheecc
Confidence 4667889999999999998875543 12445678899999999999998775 1 123789999999
Q ss_pred CCcCCCCCC----c---------cccCCCCCCEEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEc
Q 041121 67 FNQLQGSIP----D---------SSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHL 133 (574)
Q Consensus 67 ~n~i~~~~~----~---------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L 133 (574)
+|.+..... . .....+.|+.+++++|.+.......+.. .+...+. |+.|++
T Consensus 130 ~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~---------------~l~~~~~-L~~L~L 193 (344)
T d2ca6a1 130 NNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK---------------TFQSHRL-LHTVKM 193 (344)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH---------------HHHHCTT-CCEEEC
T ss_pred cccccccccccccccccccccccccccCcccceeecccccccccccccccc---------------hhhhhhh-hccccc
Confidence 998753211 1 1246789999999999887444444332 4555666 999999
Q ss_pred cCCccccc-----C-CCCCCCCCCCEEEccCcccccc----cchhhhccCCCCEEEccCCCCCcccCccccccCCchhhc
Q 041121 134 EVNHFTGP-----I-PDLGGFSSMKRLYLSDNLLNGT----INKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSR 203 (574)
Q Consensus 134 ~~n~l~~~-----~-~~l~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~ 203 (574)
++|+++.. . ..+..+++|++|++++|.+... +...+..+++|++|++++|.|++.....+...++. .
T Consensus 194 ~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~---~ 270 (344)
T d2ca6a1 194 VQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK---L 270 (344)
T ss_dssp CSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT---C
T ss_pred ccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhh---c
Confidence 99998742 2 2377889999999999998643 45667889999999999999885443333221111 0
Q ss_pred CCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccc----cc-cCCCCccEEECCCCCCCC
Q 041121 204 FGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISL----CS-ISGSKLTYIDLSSNLLSG 265 (574)
Q Consensus 204 ~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~----~~-~~~~~L~~L~L~~n~l~~ 265 (574)
. ...+++|++++|.|+..... .+ ...++|++|++++|.+..
T Consensus 271 ~---------------------~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~ 316 (344)
T d2ca6a1 271 E---------------------NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 316 (344)
T ss_dssp S---------------------SCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred c---------------------CCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence 1 24566677777766543221 11 146789999999998863
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.32 E-value=3.5e-14 Score=125.87 Aligned_cols=127 Identities=20% Similarity=0.249 Sum_probs=72.8
Q ss_pred CCCCcEEECCCC--CCCCCCchhhhcCCCCCCcEEEccCCCCCCCCCcC--CcccEEEccCCcCCCCCCccccCCCCCCE
Q 041121 11 LHSLRYLNLEEN--NLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNIS--SNFVSIDLSFNQLQGSIPDSSQHMVYLEH 86 (574)
Q Consensus 11 l~~L~~L~Ls~n--~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 86 (574)
...++.+++++. .++.++. ++..+++|++|+|++|+|+.+..+. ++|++|++++|.|+ .++..+..+++|++
T Consensus 22 ~~~~~~~~l~~~~~~i~~l~~---sl~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~ 97 (198)
T d1m9la_ 22 ATEAEKVELHGMIPPIEKMDA---TLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIK-KIENLDAVADTLEE 97 (198)
T ss_dssp CTTCSCEECCBCCTTCCCCHH---HHHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCE
T ss_pred ccccceeeeecccCchhhhhh---HHhcccccceeECcccCCCCcccccCCccccChhhcccccc-cccccccccccccc
Confidence 445666777654 2444444 6777888888888887777653332 45666666666665 23333344455666
Q ss_pred EEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccccCC--CCCCCCCCCEEEccCccccc
Q 041121 87 LSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIP--DLGGFSSMKRLYLSDNLLNG 163 (574)
Q Consensus 87 L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~--~l~~l~~L~~L~L~~n~i~~ 163 (574)
|++++|+++. ++ .+..+++ |+.|++++|+++.... .+..+++|++|++++|.+..
T Consensus 98 L~l~~N~i~~-l~--------------------~~~~l~~-L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ 154 (198)
T d1m9la_ 98 LWISYNQIAS-LS--------------------GIEKLVN-LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp EECSEEECCC-HH--------------------HHHHHHH-SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred cccccccccc-cc--------------------ccccccc-ccccccccchhccccccccccCCCccceeecCCCcccc
Confidence 6666666552 21 2334555 6666666666654322 25566666666666666543
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=3.8e-12 Score=107.71 Aligned_cols=87 Identities=21% Similarity=0.111 Sum_probs=76.1
Q ss_pred ccCcccEEEccCC-cCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCE
Q 041121 426 TLGLIKSLELSSN-KLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSV 504 (574)
Q Consensus 426 ~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~ 504 (574)
.+++|++|++++| .++...+.+|.++++|++|+|++|+|+.+.+++|.++++|++|+|++|+|+.+.++.|..+ +|+.
T Consensus 29 ~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~-~l~~ 107 (156)
T d2ifga3 29 GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQE 107 (156)
T ss_dssp SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSC-CCCE
T ss_pred CccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhccc-cccc
Confidence 3455689999766 4887777889999999999999999999999999999999999999999997777777665 6999
Q ss_pred EeccCCcCc
Q 041121 505 MDLSYNNLS 513 (574)
Q Consensus 505 L~Ls~N~l~ 513 (574)
|+|++|++.
T Consensus 108 L~L~~Np~~ 116 (156)
T d2ifga3 108 LVLSGNPLH 116 (156)
T ss_dssp EECCSSCCC
T ss_pred cccCCCccc
Confidence 999999997
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.25 E-value=2.7e-13 Score=120.07 Aligned_cols=76 Identities=28% Similarity=0.351 Sum_probs=50.0
Q ss_pred cccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCC-ccccCCCCCCEEeCCCCcccccCCCC----------cc
Q 041121 429 LIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNS-PKIGQLKSLDFLDLSRNQLVGGIPSS----------LS 497 (574)
Q Consensus 429 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~i~~~~~~~----------l~ 497 (574)
+|++|++++|.++. + ..+..+++|++|++++|+|+.... ..+..+++|+.|++++|++....+.. +.
T Consensus 94 ~L~~L~l~~N~i~~-l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~ 171 (198)
T d1m9la_ 94 TLEELWISYNQIAS-L-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK 171 (198)
T ss_dssp HCCEEECSEEECCC-H-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHH
T ss_pred cccccccccccccc-c-ccccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHH
Confidence 35777777777763 2 346677777777777777764322 45677777777777777776544332 44
Q ss_pred CCCCCCEEe
Q 041121 498 PLSVLSVMD 506 (574)
Q Consensus 498 ~l~~L~~L~ 506 (574)
.+++|+.||
T Consensus 172 ~lp~L~~LD 180 (198)
T d1m9la_ 172 RLPNLKKLD 180 (198)
T ss_dssp HCSSCCEES
T ss_pred HCCCcCEeC
Confidence 567777765
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=2.6e-08 Score=84.15 Aligned_cols=84 Identities=21% Similarity=0.205 Sum_probs=63.2
Q ss_pred hhhhcCCCCCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCCCCc----CCcccEEEccCCcCCCCCCc----
Q 041121 5 LMRSLRLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNI----SSNFVSIDLSFNQLQGSIPD---- 76 (574)
Q Consensus 5 ~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~L~~L~Ls~n~i~~~~~~---- 76 (574)
...+..+++|++|+|++|+|+.++.+...+..+++|++|++++|+|+++..+ ...|++|++++|.+......
T Consensus 58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y 137 (162)
T d1koha1 58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTY 137 (162)
T ss_dssp HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHH
T ss_pred HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhH
Confidence 3445678899999999999988855444677889999999999999887332 24688888888888754432
Q ss_pred ---cccCCCCCCEEE
Q 041121 77 ---SSQHMVYLEHLS 88 (574)
Q Consensus 77 ---~~~~l~~L~~L~ 88 (574)
.+..+|+|++||
T Consensus 138 ~~~i~~~~P~L~~LD 152 (162)
T d1koha1 138 ISAIRERFPKLLRLD 152 (162)
T ss_dssp HHHHHTTSTTCCEET
T ss_pred HHHHHHHCCCCCEEC
Confidence 256788888875
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=8e-08 Score=81.09 Aligned_cols=82 Identities=24% Similarity=0.177 Sum_probs=53.3
Q ss_pred cccCcccEEEccCCcCCCCC--cHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCC-------C
Q 041121 425 STLGLIKSLELSSNKLNGAV--PEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPS-------S 495 (574)
Q Consensus 425 ~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~-------~ 495 (574)
..++.|++|+|++|+|+... +..+..+++|+.|+|++|+|+...+..+.....|++|++++|++...... .
T Consensus 62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i 141 (162)
T d1koha1 62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI 141 (162)
T ss_dssp HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence 34667788888888877432 34566777888888888887755443444455677777888777644332 2
Q ss_pred ccCCCCCCEEe
Q 041121 496 LSPLSVLSVMD 506 (574)
Q Consensus 496 l~~l~~L~~L~ 506 (574)
+..+|+|+.||
T Consensus 142 ~~~~P~L~~LD 152 (162)
T d1koha1 142 RERFPKLLRLD 152 (162)
T ss_dssp HTTSTTCCEET
T ss_pred HHHCCCCCEEC
Confidence 45567777765
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.98 E-value=2.8e-06 Score=71.65 Aligned_cols=91 Identities=7% Similarity=0.011 Sum_probs=70.4
Q ss_pred hhhcCCCCCcEEECCCC-CCCCC--CchhhhcCCCCCCcEEEccCCCCCCC--CC------cCCcccEEEccCCcCCCC-
Q 041121 6 MRSLRLHSLRYLNLEEN-NLANC--SDWFQVIGKLHSLKTLTSHSCYLRPL--SN------ISSNFVSIDLSFNQLQGS- 73 (574)
Q Consensus 6 ~~l~~l~~L~~L~Ls~n-~i~~~--~~~~~~~~~l~~L~~L~l~~n~l~~~--~~------~~~~L~~L~Ls~n~i~~~- 73 (574)
+...+.+.|++|+|+++ .++.. ..+..++...+.|++|++++|.++.. .. ..+.|++|+|++|.++..
T Consensus 9 ~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g 88 (167)
T d1pgva_ 9 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL 88 (167)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred HHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHH
Confidence 34456799999999985 46554 45667889999999999999998764 11 136899999999998753
Q ss_pred ---CCccccCCCCCCEEEccCCcCcc
Q 041121 74 ---IPDSSQHMVYLEHLSLMFNELEG 96 (574)
Q Consensus 74 ---~~~~~~~l~~L~~L~L~~n~l~~ 96 (574)
+..++...+.|++|++++|.+..
T Consensus 89 ~~~l~~aL~~n~sL~~L~l~~n~~~~ 114 (167)
T d1pgva_ 89 LARLLRSTLVTQSIVEFKADNQRQSV 114 (167)
T ss_dssp HHHHHHHTTTTCCCSEEECCCCSSCC
T ss_pred HHHHHHHHHhCCcCCEEECCCCcCCC
Confidence 44566788899999999887663
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.92 E-value=2.3e-06 Score=72.25 Aligned_cols=93 Identities=14% Similarity=0.036 Sum_probs=52.8
Q ss_pred ccccCCCCCCEEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccccC-----CCCCCCCC
Q 041121 76 DSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPI-----PDLGGFSS 150 (574)
Q Consensus 76 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~-----~~l~~l~~ 150 (574)
.++...+.|++|+|++|.+.......++. .+...+. |++|++++|.++... ..+...+.
T Consensus 38 ~~L~~n~~L~~L~Ls~n~l~~~~~~~la~---------------~L~~n~~-L~~L~L~~n~i~~~g~~~l~~aL~~n~s 101 (167)
T d1pgva_ 38 EAACNSKHIEKFSLANTAISDSEARGLIE---------------LIETSPS-LRVLNVESNFLTPELLARLLRSTLVTQS 101 (167)
T ss_dssp HHHTTCSCCCEEECTTSCCBHHHHTTHHH---------------HHHHCSS-CCEEECCSSBCCHHHHHHHHHHTTTTCC
T ss_pred HHHhhCCccceeeccccccchhHHHHHhh---------------hhhhccc-ccceeeehhhcchHHHHHHHHHHHhCCc
Confidence 34556667777777777665333333322 3333444 777777777665411 11555567
Q ss_pred CCEEEccCccccc-------ccchhhhccCCCCEEEccCCC
Q 041121 151 MKRLYLSDNLLNG-------TINKSIGQIFKLEITCLSQNS 184 (574)
Q Consensus 151 L~~L~L~~n~i~~-------~~~~~~~~l~~L~~L~Ls~N~ 184 (574)
|++|++++|.+.. .+...+...+.|+.|+++.+.
T Consensus 102 L~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~ 142 (167)
T d1pgva_ 102 IVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 142 (167)
T ss_dssp CSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred CCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence 7777777665432 134555566777777776543
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.79 E-value=4.3e-06 Score=70.48 Aligned_cols=118 Identities=14% Similarity=0.073 Sum_probs=80.1
Q ss_pred hhhhhcCCCCCcEEECCC-CCCCCC--CchhhhcCCCCCCcEEEccCCCCCCC--------CCcCCcccEEEccCCcCCC
Q 041121 4 LLMRSLRLHSLRYLNLEE-NNLANC--SDWFQVIGKLHSLKTLTSHSCYLRPL--------SNISSNFVSIDLSFNQLQG 72 (574)
Q Consensus 4 l~~~l~~l~~L~~L~Ls~-n~i~~~--~~~~~~~~~l~~L~~L~l~~n~l~~~--------~~~~~~L~~L~Ls~n~i~~ 72 (574)
+.+...+.+.|++|++++ +.++.. ..+.+++...++|++|++++|.++.. ....+.++.+++++|.+..
T Consensus 9 l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~ 88 (166)
T d1io0a_ 9 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 88 (166)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccc
Confidence 345567889999999998 457655 55677888999999999999988765 1123678888888888763
Q ss_pred C----CCccccCCCCCCEEEcc--CCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCc
Q 041121 73 S----IPDSSQHMVYLEHLSLM--FNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNH 137 (574)
Q Consensus 73 ~----~~~~~~~l~~L~~L~L~--~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~ 137 (574)
. +...+...+.|+.++|+ +|.+.......+.. .+...+. |+.|+++.+.
T Consensus 89 ~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~---------------~L~~n~~-L~~L~l~~~~ 143 (166)
T d1io0a_ 89 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN---------------MLEKNTT-LLKFGYHFTQ 143 (166)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH---------------HHHHCSS-CCEEECCCSS
T ss_pred hhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHH---------------HHHhCCC-cCEEeCcCCC
Confidence 3 34566777888876654 55554333333332 3445555 7777776554
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.44 E-value=1.6e-05 Score=66.79 Aligned_cols=95 Identities=15% Similarity=0.174 Sum_probs=58.7
Q ss_pred CCccccCCCCCCEEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCccccc-----CCCCCCC
Q 041121 74 IPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGP-----IPDLGGF 148 (574)
Q Consensus 74 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~-----~~~l~~l 148 (574)
+..++...++|++|++++|.++......++. .+...+. ++.+++++|.+... ...+...
T Consensus 38 l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~---------------~l~~~~~-l~~l~l~~~~~~~~g~~~l~~~l~~~ 101 (166)
T d1io0a_ 38 CAEALKTNTYVKKFSIVGTRSNDPVAFALAE---------------MLKVNNT-LKSLNVESNFISGSGILALVEALQSN 101 (166)
T ss_dssp HHHHHTTCCSCCEEECTTSCCCHHHHHHHHH---------------HHHHCSS-CCEEECCSSCCCHHHHHHHHHGGGGC
T ss_pred HHHHHhcCCccCeeeccCCcccHHHHHHHHH---------------HHhhccc-chhhhhccccccchhHHHHHHHHHhC
Confidence 3445567778888888888776544444433 3444455 88888888776532 1225566
Q ss_pred CCCCEEEcc--Cccccc----ccchhhhccCCCCEEEccCCC
Q 041121 149 SSMKRLYLS--DNLLNG----TINKSIGQIFKLEITCLSQNS 184 (574)
Q Consensus 149 ~~L~~L~L~--~n~i~~----~~~~~~~~l~~L~~L~Ls~N~ 184 (574)
++|+.++|+ +|.+.. .+...+...+.|+.|+++.+.
T Consensus 102 ~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~ 143 (166)
T d1io0a_ 102 TSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 143 (166)
T ss_dssp SSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred ccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence 777765554 555543 345556677788888877654
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