Citrus Sinensis ID: 041132

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370
MDCYNSSILPTQEQLLVFDASVLQFQSTIPSQFIWPDGEKPSLELPELVIPPIDLCSFLSGDPFEVDKICQLVDEACKKHGFFLVVNHGVDSMLIKKAHKYMDSFFATQLSKKQKAQRKIGDHCGYSSSFTGRFSNKLPWKETLTFRYRANDENSSTVVEDYFFNVMGQDFRQFGKVYQEYCEAMSSLSLGIMELLGMSLGVGRAHFREFFQGHDSIMRLNYYPPCQKPNLTLGTGPHCDPTSLTILHQDQVGGLQVYVDEQWQSVSPNPDAFVVNIGDTFMALSNGIYKSCLHRAAVNNTTVRKSLAFFLCPKMDKVVTPPNNLVNANNPRIYPDFTWHNLLHFTQNYFRADVKTLNAFSAWLQQHVNI
cccccccccccccHHHHHHHHccccccccccccccccccccccccccccccEEEccccccccHHHHHHHHHHHHHHHHHccEEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHHHcccccEEEccccccccccccccEEEEEEEEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccEEEEEccccccccccccccccccccccccEEEEccccccEEEEEccEEEEEccccccEEEEEccHHHHHHcccccccccEEEEcccccEEEEEEEEccccccEEEccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHcc
cccccccccccccccEEEEHHHHcccccccHHcccccccccccccccccccEEEHHHcccccHHHHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHHccccccEEEEEEEcccccccccHHHEEEEEccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccEEEEEEEcccccccccccEEEEcccccEEEEEEcccccEEEEEccEEEEcccccccEEEEEcHHHHHHcccccccccEEEcccccccEEEEEEEEEccccccEEccHHHcccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHcccc
mdcynssilptqeQLLVFDASVLQfqstipsqfiwpdgekpslelpelvippidlcsflsgdpfevdKICQLVDEACKKHGFFLVVNHGVDSMLIKKAHKYMDSFFATQLSKKQKAQRkigdhcgysssftgrfsnklpwketltfryrandensstVVEDYFFNVMGQDFRQFGKVYQEYCEAMSSLSLGIMELLGMSLGVGRAHFREffqghdsimrlnyyppcqkpnltlgtgphcdptsltilhqdqvgGLQVYVDeqwqsvspnpdafvVNIGDTFMALSNGIYKSCLHRAAVNNTTVRKSLAFFlcpkmdkvvtppnnlvnannpriypdftwhnllhFTQNYFRADVKTLNAFSAWLQQHVNI
mdcynssiLPTQEQLLVFDASVLQFQSTIPSQFIWPDGEKPSLELPELVIPPIDLCSFLSGDPFEVDKICQLVDEACKKHGFFLVVNHGVDSMLIKKAHKYMDSFFATQLSKKQKAQRKIGdhcgysssftgrfsnklpWKETLTFryrandensstVVEDYFFNVMGQDFRQFGKVYQEYCEAMSSLSLGIMELLGMSLGVGRAHFREFFQGHDSIMRLNYYPPCQKPNLTLGTGPHCDPTSLTILHQDQVGGLQVYVDEQWQSVSPNPDAFVVNIGDTFMALSNGIYKSCLHRAAVNNTTVRKSLAFFLCPKMDKVVTPPNNLVNANNPRIYPDFTWHNLLHFTQNYFRADVKTLNAFSAWLQQHVNI
MDCYNSSILPTQEQLLVFDASVLQFQSTIPSQFIWPDGEKPSLELPELVIPPIDLCSFLSGDPFEVDKICQLVDEACKKHGFFLVVNHGVDSMLIKKAHKYMDSFFATQLSKKQKAQRKIGDHCGYSSSFTGRFSNKLPWKETLTFRYRANDENSSTVVEDYFFNVMGQDFRQFGKVYQEYCEAMSSLSLGIMELLGMSLGVGRAHFREFFQGHDSIMRLNYYPPCQKPNLTLGTGPHCDPTSLTILHQDQVGGLQVYVDEQWQSVSPNPDAFVVNIGDTFMALSNGIYKSCLHRAAVNNTTVRKSLAFFLCPKMDKVVTPPNNLVNANNPRIYPDFTWHNLLHFTQNYFRADVKTLNAFSAWLQQHVNI
*******ILPTQEQLLVFDASVLQFQSTIPSQFIWPDGEKPSLELPELVIPPIDLCSFLSGDPFEVDKICQLVDEACKKHGFFLVVNHGVDSMLIKKAHKYMDSFFATQLS******RKIGDHCGYSSSFTGRFSNKLPWKETLTFRYRANDENSSTVVEDYFFNVMGQDFRQFGKVYQEYCEAMSSLSLGIMELLGMSLGVGRAHFREFFQGHDSIMRLNYYPPCQKPNLTLGTGPHCDPTSLTILHQDQVGGLQVYVDEQWQSVSPNPDAFVVNIGDTFMALSNGIYKSCLHRAAVNNTTVRKSLAFFLCPKMDKVVTPPNNLVNANNPRIYPDFTWHNLLHFTQNYFRADVKTLNAFSAWLQQ****
***************************TIPSQFIWPDGEK*****PELVIPPIDLCSFLSGDPFEVDKICQLVDEACKKHGFFLVVNHGVDSMLIKKAHKYMDSFFATQLSKKQKAQRKIGDHCGYSSSFTGRFSNKLPWKETLTFRYRANDENSSTVVEDYFFNVMGQDFRQFGKVYQEYCEAMSSLSLGIMELLGMSLGVGRAHFREFFQGHDSIMRLNYYPPCQKPNLTLGTGPHCDPTSLTILHQDQVGGLQVYVDEQWQSVSPNPDAFVVNIGDTFMALSNGIYKSCLHRAAVNNTTVRKSLAFFLCPKMDKVVTPPNNLVNANNPRIYPDFTWHNLLHFTQNYFRADVKTLNAFSAWLQQH***
MDCYNSSILPTQEQLLVFDASVLQFQSTIPSQFIWPDGEKPSLELPELVIPPIDLCSFLSGDPFEVDKICQLVDEACKKHGFFLVVNHGVDSMLIKKAHKYMDSFFAT*************DHCGYSSSFTGRFSNKLPWKETLTFRYRANDENSSTVVEDYFFNVMGQDFRQFGKVYQEYCEAMSSLSLGIMELLGMSLGVGRAHFREFFQGHDSIMRLNYYPPCQKPNLTLGTGPHCDPTSLTILHQDQVGGLQVYVDEQWQSVSPNPDAFVVNIGDTFMALSNGIYKSCLHRAAVNNTTVRKSLAFFLCPKMDKVVTPPNNLVNANNPRIYPDFTWHNLLHFTQNYFRADVKTLNAFSAWLQQHVNI
*****SSILPTQEQLLVFDASVLQFQSTIPSQFIWPDGEKPSLELPELVIPPIDLCSFLSGDPFEVDKICQLVDEACKKHGFFLVVNHGVDSMLIKKAHKYMDSFFATQLSKKQKAQRKIGDHCGYSSSFTGRFSNKLPWKETLTFRYRANDENSSTVVEDYFFNVMGQDFRQFGKVYQEYCEAMSSLSLGIMELLGMSLGVGRAHFREFFQGHDSIMRLNYYPPCQKPNLTLGTGPHCDPTSLTILHQDQVGGLQVYVDEQWQSVSPNPDAFVVNIGDTFMALSNGIYKSCLHRAAVNNTTVRKSLAFFLCPKMDKVVTPPNNLVNANNPRIYPDFTWHNLLHFTQNYFRADVKTLNAFSAWLQQH***
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDCYNSSILPTQEQLLVFDASVLQFQSTIPSQFIWPDGEKPSLELPELVIPPIDLCSFLSGDPFEVDKICQLVDEACKKHGFFLVVNHGVDSMLIKKAHKYMDSFFATQLSKKQKAQRKIGDHCGYSSSFTGRFSNKLPWKETLTFRYRANDENSSTVVEDYFFNVMGQDFRQFGKVYQEYCEAMSSLSLGIMELLGMSLGVGRAHFREFFQGHDSIMRLNYYPPCQKPNLTLGTGPHCDPTSLTILHQDQVGGLQVYVDEQWQSVSPNPDAFVVNIGDTFMALSNGIYKSCLHRAAVNNTTVRKSLAFFLCPKMDKVVTPPNNLVNANNPRIYPDFTWHNLLHFTQNYFRADVKTLNAFSAWLQQHVNI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query370 2.2.26 [Sep-21-2011]
Q39111378 Gibberellin 20 oxidase 2 yes no 0.937 0.917 0.651 1e-136
Q39110377 Gibberellin 20 oxidase 1 no no 0.948 0.931 0.645 1e-134
O04706365 Gibberellin 20 oxidase 1- N/A no 0.932 0.945 0.630 1e-133
O04705361 Gibberellin 20 oxidase 1- N/A no 0.940 0.963 0.627 1e-133
O04707365 Gibberellin 20 oxidase 1- N/A no 0.932 0.945 0.627 1e-132
Q39112380 Gibberellin 20 oxidase 3 no no 0.959 0.934 0.606 1e-127
P93771372 Gibberellin 20 oxidase 1 yes no 0.970 0.965 0.564 1e-121
Q0JH50389 Gibberellin 20 oxidase 2 no no 0.910 0.866 0.529 1e-100
P0C5H5389 Gibberellin 20 oxidase 2 N/A no 0.910 0.866 0.529 1e-100
D4N501364 Probable 2-oxoglutarate/F N/A no 0.735 0.747 0.333 7e-42
>sp|Q39111|GAOX2_ARATH Gibberellin 20 oxidase 2 OS=Arabidopsis thaliana GN=20ox2 PE=2 SV=1 Back     alignment and function desciption
 Score =  486 bits (1250), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 230/353 (65%), Positives = 277/353 (78%), Gaps = 6/353 (1%)

Query: 12  QEQLLVFDASVLQFQSTIPSQFIWPDGEKPSLELPELVIPPIDLCSFLSGDPFEVDKICQ 71
           Q   L+F+ S+L  QS IP+QFIWPD EKPS+++PEL +P IDL S       E  ++  
Sbjct: 25  QTSPLIFNPSLLNLQSQIPNQFIWPDEEKPSIDIPELNVPFIDLSS--QDSTLEAPRV-- 80

Query: 72  LVDEACKKHGFFLVVNHGVDSMLIKKAHKYMDSFFATQLSKKQKAQRKIGDHCGYSSSFT 131
            + EAC KHGFFLVVNHGV   LI  AH+ M+SFF   L+ KQKAQRK G+ CGY+SSFT
Sbjct: 81  -IAEACTKHGFFLVVNHGVSESLIADAHRLMESFFDMPLAGKQKAQRKPGESCGYASSFT 139

Query: 132 GRFSNKLPWKETLTFRYRANDENSSTVVEDYFFNVMGQDFRQFGKVYQEYCEAMSSLSLG 191
           GRFS KLPWKETL+F++ +ND + S  V+DYF + +GQ+F QFGKVYQ+YCEAMSSLSL 
Sbjct: 140 GRFSTKLPWKETLSFQF-SNDNSGSRTVQDYFSDTLGQEFEQFGKVYQDYCEAMSSLSLK 198

Query: 192 IMELLGMSLGVGRAHFREFFQGHDSIMRLNYYPPCQKPNLTLGTGPHCDPTSLTILHQDQ 251
           IMELLG+SLGV R +FR FF+ +DSIMRLN+YPPCQ P+LTLGTGPHCDP+SLTILHQD 
Sbjct: 199 IMELLGLSLGVNRDYFRGFFEENDSIMRLNHYPPCQTPDLTLGTGPHCDPSSLTILHQDH 258

Query: 252 VGGLQVYVDEQWQSVSPNPDAFVVNIGDTFMALSNGIYKSCLHRAAVNNTTVRKSLAFFL 311
           V GLQV+VD QWQS+ PNP AFVVNIGDTFMALSNGI+KSCLHRA VN  + RKS+AFFL
Sbjct: 259 VNGLQVFVDNQWQSIRPNPKAFVVNIGDTFMALSNGIFKSCLHRAVVNRESARKSMAFFL 318

Query: 312 CPKMDKVVTPPNNLVNANNPRIYPDFTWHNLLHFTQNYFRADVKTLNAFSAWL 364
           CPK DKVV PP++++     R YPDFTW   L FTQ ++RADV TL++FS W+
Sbjct: 319 CPKKDKVVKPPSDILEKMKTRKYPDFTWSMFLEFTQKHYRADVNTLDSFSNWV 371
Key oxidase enzyme in the biosynthesis of gibberellin that catalyzes the conversion of GA12 and GA53 to GA9 and GA20 respectively, via a three-step oxidation at C-20 of the GA skeleton. GA53 is less effectively oxidized than GA12, and GA25 is also formed as a minor product.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: -
>sp|Q39110|GAOX1_ARATH Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana GN=20ox1 PE=2 SV=2 Back     alignment and function description
>sp|O04706|GAO1B_WHEAT Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN=GA20ox1B PE=2 SV=1 Back     alignment and function description
>sp|O04705|GAO1D_WHEAT Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN=GA20ox1D PE=1 SV=1 Back     alignment and function description
>sp|O04707|GAO1A_WHEAT Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN=GA20ox1A PE=2 SV=1 Back     alignment and function description
>sp|Q39112|GAOX3_ARATH Gibberellin 20 oxidase 3 OS=Arabidopsis thaliana GN=20ox3 PE=2 SV=1 Back     alignment and function description
>sp|P93771|GAOX1_ORYSJ Gibberellin 20 oxidase 1 OS=Oryza sativa subsp. japonica GN=20ox1 PE=2 SV=2 Back     alignment and function description
>sp|Q0JH50|GAOX2_ORYSJ Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. japonica GN=20ox2 PE=1 SV=1 Back     alignment and function description
>sp|P0C5H5|GAOX2_ORYSI Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. indica GN=20ox2 PE=1 SV=1 Back     alignment and function description
>sp|D4N501|DIOX2_PAPSO Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase OS=Papaver somniferum GN=DIOX2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query370
213876865372 gibberellin 20-oxidase 2 [Citrus sinensi 1.0 0.994 0.994 0.0
225453833382 PREDICTED: gibberellin 20 oxidase 2-like 0.967 0.937 0.760 1e-165
147782450367 hypothetical protein VITISV_006349 [Viti 0.967 0.975 0.757 1e-165
255541396389 gibberellin 20-oxidase, putative [Ricinu 0.954 0.907 0.765 1e-164
224063947366 gibberellin 20-oxidase [Populus trichoca 0.954 0.964 0.757 1e-162
224127474372 gibberellin 20-oxidase [Populus trichoca 0.951 0.946 0.737 1e-156
255539617378 gibberellin 20-oxidase, putative [Ricinu 0.959 0.939 0.721 1e-156
317106632371 JHL05D22.9 [Jatropha curcas] 0.956 0.954 0.727 1e-154
225455655382 PREDICTED: gibberellin 20 oxidase 1 [Vit 0.954 0.924 0.725 1e-152
99032729382 gibberellin 20-oxidase [Vitis vinifera] 0.954 0.924 0.725 1e-152
>gi|213876865|gb|ACJ54434.1| gibberellin 20-oxidase 2 [Citrus sinensis x Citrus trifoliata] gi|213876869|gb|ACJ54436.1| gibberellin 20-oxidase 2 [Citrus sinensis x Citrus trifoliata] Back     alignment and taxonomy information
 Score =  771 bits (1992), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/370 (99%), Positives = 369/370 (99%)

Query: 1   MDCYNSSILPTQEQLLVFDASVLQFQSTIPSQFIWPDGEKPSLELPELVIPPIDLCSFLS 60
           MDCYNSSILPTQEQLLVFDASVLQFQSTIPSQFIWPDGEKPSLELPELVIPPIDL SFLS
Sbjct: 3   MDCYNSSILPTQEQLLVFDASVLQFQSTIPSQFIWPDGEKPSLELPELVIPPIDLRSFLS 62

Query: 61  GDPFEVDKICQLVDEACKKHGFFLVVNHGVDSMLIKKAHKYMDSFFATQLSKKQKAQRKI 120
           GDPFEVDKICQLVDEACKKHGFFLVVNHGVDSMLIKKAHKYMDSFFATQLSKKQKAQRKI
Sbjct: 63  GDPFEVDKICQLVDEACKKHGFFLVVNHGVDSMLIKKAHKYMDSFFATQLSKKQKAQRKI 122

Query: 121 GDHCGYSSSFTGRFSNKLPWKETLTFRYRANDENSSTVVEDYFFNVMGQDFRQFGKVYQE 180
           GDHCGYSSSFTGRFSNKLPWKETLTFRYRANDENSSTVVEDYFFNVMGQDFRQFGKVYQE
Sbjct: 123 GDHCGYSSSFTGRFSNKLPWKETLTFRYRANDENSSTVVEDYFFNVMGQDFRQFGKVYQE 182

Query: 181 YCEAMSSLSLGIMELLGMSLGVGRAHFREFFQGHDSIMRLNYYPPCQKPNLTLGTGPHCD 240
           YCEAMSSLSLGIMELLGMSLGVGRAHFREFFQGHDSI+RLNYYPPCQKPNLTLGTGPHCD
Sbjct: 183 YCEAMSSLSLGIMELLGMSLGVGRAHFREFFQGHDSIIRLNYYPPCQKPNLTLGTGPHCD 242

Query: 241 PTSLTILHQDQVGGLQVYVDEQWQSVSPNPDAFVVNIGDTFMALSNGIYKSCLHRAAVNN 300
           PTSLTILHQDQVGGLQVYVDEQWQSVSPNPDAFVVNIGDTFMALSNGIYKSCLHRAAVNN
Sbjct: 243 PTSLTILHQDQVGGLQVYVDEQWQSVSPNPDAFVVNIGDTFMALSNGIYKSCLHRAAVNN 302

Query: 301 TTVRKSLAFFLCPKMDKVVTPPNNLVNANNPRIYPDFTWHNLLHFTQNYFRADVKTLNAF 360
           TTVRKSLAFFLCPKMDKVVTPPNNLVNANNPRIYPDFTWHNLLHFTQNYFRADVKTLNAF
Sbjct: 303 TTVRKSLAFFLCPKMDKVVTPPNNLVNANNPRIYPDFTWHNLLHFTQNYFRADVKTLNAF 362

Query: 361 SAWLQQHVNI 370
           SAWLQQHVNI
Sbjct: 363 SAWLQQHVNI 372

Source: Citrus sinensis x Citrus trifoliata

Species: Citrus sinensis x Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225453833|ref|XP_002272415.1| PREDICTED: gibberellin 20 oxidase 2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147782450|emb|CAN77383.1| hypothetical protein VITISV_006349 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255541396|ref|XP_002511762.1| gibberellin 20-oxidase, putative [Ricinus communis] gi|223548942|gb|EEF50431.1| gibberellin 20-oxidase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224063947|ref|XP_002301315.1| gibberellin 20-oxidase [Populus trichocarpa] gi|222843041|gb|EEE80588.1| gibberellin 20-oxidase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224127474|ref|XP_002320083.1| gibberellin 20-oxidase [Populus trichocarpa] gi|222860856|gb|EEE98398.1| gibberellin 20-oxidase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255539617|ref|XP_002510873.1| gibberellin 20-oxidase, putative [Ricinus communis] gi|223549988|gb|EEF51475.1| gibberellin 20-oxidase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|317106632|dbj|BAJ53138.1| JHL05D22.9 [Jatropha curcas] Back     alignment and taxonomy information
>gi|225455655|ref|XP_002263071.1| PREDICTED: gibberellin 20 oxidase 1 [Vitis vinifera] gi|147863007|emb|CAN78788.1| hypothetical protein VITISV_014231 [Vitis vinifera] gi|380448154|gb|AFD54200.1| gibberellin 20 oxidase 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|99032729|gb|ABF61825.1| gibberellin 20-oxidase [Vitis vinifera] gi|99032731|gb|ABF61826.1| gibberellin 20-oxidase [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query370
TAIR|locus:2165341378 GA20OX2 "gibberellin 20 oxidas 0.937 0.917 0.651 1.3e-125
TAIR|locus:2005511377 GA20OX1 [Arabidopsis thaliana 0.948 0.931 0.645 4.4e-123
TAIR|locus:2182875380 GA20OX3 "gibberellin 20-oxidas 0.959 0.934 0.606 3e-117
TAIR|locus:2206036376 GA20OX4 "gibberellin 20-oxidas 0.940 0.925 0.607 1.9e-115
UNIPROTKB|P93771372 20ox1 "Gibberellin 20 oxidase 0.962 0.956 0.577 2e-111
UNIPROTKB|Q69LD8367 OSJNBa0050F10.19 "Putative gib 0.932 0.940 0.519 3e-101
UNIPROTKB|Q6L4Y3408 OSJNBb0092E21.11 "Putative gib 0.902 0.818 0.511 4.3e-86
TAIR|locus:2037159385 GA20OX5 "gibberellin 20-oxidas 0.918 0.883 0.465 1e-82
TAIR|locus:2169697371 AT5G05600 [Arabidopsis thalian 0.824 0.822 0.366 1e-43
TAIR|locus:2153924341 DMR6 "DOWNY MILDEW RESISTANT 6 0.808 0.876 0.344 5.9e-41
TAIR|locus:2165341 GA20OX2 "gibberellin 20 oxidase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1234 (439.4 bits), Expect = 1.3e-125, P = 1.3e-125
 Identities = 230/353 (65%), Positives = 277/353 (78%)

Query:    12 QEQLLVFDASVLQFQSTIPSQFIWPDGEKPSLELPELVIPPIDLCSFLSGDPFEVDKICQ 71
             Q   L+F+ S+L  QS IP+QFIWPD EKPS+++PEL +P IDL S       E  ++  
Sbjct:    25 QTSPLIFNPSLLNLQSQIPNQFIWPDEEKPSIDIPELNVPFIDLSS--QDSTLEAPRV-- 80

Query:    72 LVDEACKKHGFFLVVNHGVDSMLIKKAHKYMDSFFATQLSKKQKAQRKIGDHCGYSSSFT 131
              + EAC KHGFFLVVNHGV   LI  AH+ M+SFF   L+ KQKAQRK G+ CGY+SSFT
Sbjct:    81 -IAEACTKHGFFLVVNHGVSESLIADAHRLMESFFDMPLAGKQKAQRKPGESCGYASSFT 139

Query:   132 GRFSNKLPWKETLTFRYRANDENSSTVVEDYFFNVMGQDFRQFGKVYQEYCEAMSSLSLG 191
             GRFS KLPWKETL+F++ +ND + S  V+DYF + +GQ+F QFGKVYQ+YCEAMSSLSL 
Sbjct:   140 GRFSTKLPWKETLSFQF-SNDNSGSRTVQDYFSDTLGQEFEQFGKVYQDYCEAMSSLSLK 198

Query:   192 IMELLGMSLGVGRAHFREFFQGHDSIMRLNYYPPCQKPNLTLGTGPHCDPTSLTILHQDQ 251
             IMELLG+SLGV R +FR FF+ +DSIMRLN+YPPCQ P+LTLGTGPHCDP+SLTILHQD 
Sbjct:   199 IMELLGLSLGVNRDYFRGFFEENDSIMRLNHYPPCQTPDLTLGTGPHCDPSSLTILHQDH 258

Query:   252 VGGLQVYVDEQWQSVSPNPDAFVVNIGDTFMALSNGIYKSCLHRAAVNNTTVRKSLAFFL 311
             V GLQV+VD QWQS+ PNP AFVVNIGDTFMALSNGI+KSCLHRA VN  + RKS+AFFL
Sbjct:   259 VNGLQVFVDNQWQSIRPNPKAFVVNIGDTFMALSNGIFKSCLHRAVVNRESARKSMAFFL 318

Query:   312 CPKMDKVVTPPNNLVNANNPRIYPDFTWHNLLHFTQNYFRADVKTLNAFSAWL 364
             CPK DKVV PP++++     R YPDFTW   L FTQ ++RADV TL++FS W+
Sbjct:   319 CPKKDKVVKPPSDILEKMKTRKYPDFTWSMFLEFTQKHYRADVNTLDSFSNWV 371
GO:0005506 "iron ion binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009639 "response to red or far red light" evidence=IEP
GO:0009739 "response to gibberellin stimulus" evidence=IEP
GO:0009826 "unidimensional cell growth" evidence=IGI
GO:0009908 "flower development" evidence=IGI
GO:0080167 "response to karrikin" evidence=IEP
GO:0009686 "gibberellin biosynthetic process" evidence=IDA
GO:0045544 "gibberellin 20-oxidase activity" evidence=IDA
TAIR|locus:2005511 GA20OX1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2182875 GA20OX3 "gibberellin 20-oxidase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2206036 GA20OX4 "gibberellin 20-oxidase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P93771 20ox1 "Gibberellin 20 oxidase 1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q69LD8 OSJNBa0050F10.19 "Putative gibberellin 20-dioxygenase" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q6L4Y3 OSJNBb0092E21.11 "Putative gibberellin 20-oxidase" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2037159 GA20OX5 "gibberellin 20-oxidase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169697 AT5G05600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2153924 DMR6 "DOWNY MILDEW RESISTANT 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P0C5H5GAOX2_ORYSI1, ., 1, 4, ., 1, 1, ., -0.52920.91080.8663N/Ano
O04705GAO1D_WHEAT1, ., 1, 4, ., 1, 1, ., -0.62780.94050.9639N/Ano
O04706GAO1B_WHEAT1, ., 1, 4, ., 1, 1, ., -0.63030.93240.9452N/Ano
O04707GAO1A_WHEAT1, ., 1, 4, ., 1, 1, ., -0.62750.93240.9452N/Ano
Q39111GAOX2_ARATH1, ., 1, 4, ., 1, 1, ., -0.65150.93780.9179yesno
P93771GAOX1_ORYSJ1, ., 1, 4, ., 1, 1, ., -0.56480.97020.9650yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.110.691
4th Layer1.14.11.9LOW CONFIDENCE prediction!
3rd Layer1.14.11.13LOW CONFIDENCE prediction!
4th Layer1.14.11.4LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query370
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 0.0
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 2e-65
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 8e-62
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 5e-60
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 1e-54
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 7e-53
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 8e-52
PLN02947374 PLN02947, PLN02947, oxidoreductase 1e-49
PLN02704335 PLN02704, PLN02704, flavonol synthase 2e-49
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 2e-49
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 2e-49
PLN02216357 PLN02216, PLN02216, protein SRG1 5e-47
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 3e-41
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 1e-39
PLN02904357 PLN02904, PLN02904, oxidoreductase 6e-37
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 2e-36
PLN02997325 PLN02997, PLN02997, flavonol synthase 1e-33
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 8e-31
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 1e-30
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 7e-30
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 5e-29
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 1e-27
pfam14226113 pfam14226, DIOX_N, non-haem dioxygenase in morphin 2e-26
PLN02485329 PLN02485, PLN02485, oxidoreductase 1e-25
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 2e-25
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 5e-24
PLN03002332 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy 1e-16
PLN03176120 PLN03176, PLN03176, flavanone-3-hydroxylase; Provi 4e-06
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information 
 Score =  699 bits (1806), Expect = 0.0
 Identities = 247/358 (68%), Positives = 284/358 (79%), Gaps = 1/358 (0%)

Query: 10  PTQEQLLVFDASVLQFQSTIPSQFIWPDGEKPSLELPELVIPPIDLCSFLSGDPFEVDKI 69
             ++  LVFDASVLQ QS IP+QFIWPD EKPS  +PEL +P IDL  FLSGD     + 
Sbjct: 1   KREQGSLVFDASVLQKQSNIPAQFIWPDEEKPSAAVPELAVPLIDLGGFLSGDEAATAEA 60

Query: 70  CQLVDEACKKHGFFLVVNHGVDSMLIKKAHKYMDSFFATQLSKKQKAQRKIGDHCGYSSS 129
            +LV EAC KHGFF VVNHGVD+ LI+ AH+YMD+FF   LS+KQ+AQRK G+ CGY+SS
Sbjct: 61  ARLVREACLKHGFFQVVNHGVDAALIRAAHEYMDAFFKLPLSEKQRAQRKPGESCGYASS 120

Query: 130 FTGRFSNKLPWKETLTFRYRANDENSSTVVEDYFFNVMGQDFRQFGKVYQEYCEAMSSLS 189
            TGRFS+KLPWKETL+F Y A D  SS VV DYF +V+G+DF QFGKVYQEYCEAM +LS
Sbjct: 121 HTGRFSSKLPWKETLSFGYHA-DGGSSPVVVDYFKSVLGEDFEQFGKVYQEYCEAMKTLS 179

Query: 190 LGIMELLGMSLGVGRAHFREFFQGHDSIMRLNYYPPCQKPNLTLGTGPHCDPTSLTILHQ 249
           L IMELLG+SLGV R ++R+FF+  DSIMR NYYPPCQ+P LTLGTGPHCDPTSLTILHQ
Sbjct: 180 LKIMELLGISLGVDRGYYRKFFEDGDSIMRCNYYPPCQEPELTLGTGPHCDPTSLTILHQ 239

Query: 250 DQVGGLQVYVDEQWQSVSPNPDAFVVNIGDTFMALSNGIYKSCLHRAAVNNTTVRKSLAF 309
           DQVGGLQV+VD +W+SV P P A VVNIGDTFMALSNG YKSCLHRA VN+   R+SLAF
Sbjct: 240 DQVGGLQVFVDNKWRSVRPRPGALVVNIGDTFMALSNGRYKSCLHRAVVNSERERRSLAF 299

Query: 310 FLCPKMDKVVTPPNNLVNANNPRIYPDFTWHNLLHFTQNYFRADVKTLNAFSAWLQQH 367
           FLCPK DKVV PP  LV+   PR YPDFTW +LL FTQ ++RAD+ TL AFS WLQ  
Sbjct: 300 FLCPKEDKVVRPPQELVDREGPRKYPDFTWSDLLEFTQKHYRADMNTLQAFSNWLQSS 357

Length = 361
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178720 PLN03176, PLN03176, flavanone-3-hydroxylase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 370
PLN02276361 gibberellin 20-oxidase 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02216357 protein SRG1 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN02947374 oxidoreductase 100.0
PLN02904357 oxidoreductase 100.0
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02704335 flavonol synthase 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PLN02997325 flavonol synthase 100.0
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
PLN02485329 oxidoreductase 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.91
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 99.9
PLN03176120 flavanone-3-hydroxylase; Provisional 99.85
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 96.49
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 95.92
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 94.87
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 91.8
TIGR02466201 conserved hypothetical protein. This family consis 82.89
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information 
Probab=100.00  E-value=3e-80  Score=602.13  Aligned_cols=345  Identities=69%  Similarity=1.174  Sum_probs=305.1

Q ss_pred             hcCCCCCCCCCCCCCCCCCCCCCCCCcceeeCCCCCCCChHHHHHHHHHHHHHHHhccEEEEEecCCCHHHHHHHHHHHH
Q 041132           24 QFQSTIPSQFIWPDGEKPSLELPELVIPPIDLCSFLSGDPFEVDKICQLVDEACKKHGFFLVVNHGVDSMLIKKAHKYMD  103 (370)
Q Consensus        24 ~~~~~vp~~~~~p~~~~~~~~~~~~~iPvIDls~l~~~d~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~  103 (370)
                      ....+||..|++|.+++|.......+||||||+.+.++|+++|.+++++|.+||++||||||+||||+.++++++++.++
T Consensus        15 ~~~~~vp~~~~~~~~~~p~~~~~~~~iPvIDls~~~~~~~~~~~~~~~~l~~Ac~~~GFF~l~nHGI~~~l~~~~~~~~~   94 (361)
T PLN02276         15 QKQSNIPAQFIWPDEEKPSAAVPELAVPLIDLGGFLSGDEAATAEAARLVREACLKHGFFQVVNHGVDAALIRAAHEYMD   94 (361)
T ss_pred             cCCCCCCHHhcCCccccCCCCCcCCCCCeEEChhhcCCChHHHHHHHHHHHHHHHHCcEEEEEcCCCCHHHHHHHHHHHH
Confidence            34457999999999888763223468999999999877777888999999999999999999999999999999999999


Q ss_pred             HhhcCCHHHHHHhhccCCCCccccCCCCCCcCCCCCcccccccccccCCCCCchhhhhhhccccCchhHHHHHHHHHHHH
Q 041132          104 SFFATQLSKKQKAQRKIGDHCGYSSSFTGRFSNKLPWKETLTFRYRANDENSSTVVEDYFFNVMGQDFRQFGKVYQEYCE  183 (370)
Q Consensus       104 ~fF~lp~e~K~~~~~~~~~~~GY~~~~~~~~~~~~d~~E~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~fr~~~~~y~~  183 (370)
                      +||+||.|+|+++....+..+||.....+..++..||+|.|.++.. +..........|+.+.||+++++||+.+.+|+.
T Consensus        95 ~FF~LP~eeK~k~~~~~~~~~GY~~~~~~~~~~~~d~~E~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~fr~~~~~y~~  173 (361)
T PLN02276         95 AFFKLPLSEKQRAQRKPGESCGYASSHTGRFSSKLPWKETLSFGYH-ADGGSSPVVVDYFKSVLGEDFEQFGKVYQEYCE  173 (361)
T ss_pred             HHHcCCHHHHHhhccCCCCccccCccCccccCCCCCeeeeEEEecc-CcccccccchhcccccCCcchHHHHHHHHHHHH
Confidence            9999999999999765556789988766655667899999998754 322111112234456677777899999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCChhHHHhhhcCCceeEEEeccCCCCCCCCCCccccccCCCceEEEecCCCCCeeeeeCCee
Q 041132          184 AMSSLSLGIMELLGMSLGVGRAHFREFFQGHDSIMRLNYYPPCQKPNLTLGTGPHCDPTSLTILHQDQVGGLQVYVDEQW  263 (370)
Q Consensus       184 ~~~~l~~~ll~~l~~~Lgl~~~~~~~~~~~~~~~lr~~~Ypp~~~~~~~~g~~~HtD~~~lTlL~qd~~~GLqV~~~g~W  263 (370)
                      +|.+++..||++|+++||+++++|.+.+..+.+.||++|||+|+.++..+|+++|||+|+||||+||.++||||+++|+|
T Consensus       174 ~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YP~~~~~~~~~g~~~HTD~g~lTlL~Qd~v~GLQV~~~g~W  253 (361)
T PLN02276        174 AMKTLSLKIMELLGISLGVDRGYYRKFFEDGDSIMRCNYYPPCQEPELTLGTGPHCDPTSLTILHQDQVGGLQVFVDNKW  253 (361)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHhcCccceeeeEeCCCCCCcccccCCccccCCceeEEEEecCCCceEEEECCEE
Confidence            99999999999999999999999999998888899999999999988899999999999999999999999999999999


Q ss_pred             EEccCCCCeEEEEeccchhhccCCeeccccccCCCCCCCceEEEEEecCCCCCceEeCCCCCcCCCCCCCCCCcCHHHHH
Q 041132          264 QSVSPNPDAFVVNIGDTFMALSNGIYKSCLHRAAVNNTTVRKSLAFFLCPKMDKVVTPPNNLVNANNPRIYPDFTWHNLL  343 (370)
Q Consensus       264 ~~V~p~pg~lvVnvGd~le~~TnG~~kS~~HRV~~~~~~~R~Si~~F~~P~~d~~i~p~~~~v~~~~p~~y~~~~~~ey~  343 (370)
                      ++|+|.||++|||+||+||+||||+|||++|||+.++.++||||+||+.|+.|++|.|+++++++++|++|++++++||+
T Consensus       254 i~V~p~pgalVVNiGD~L~~~TNG~~kSt~HRVv~~~~~~R~Sia~F~~P~~d~~i~pl~~~v~~~~p~~y~~~~~~ey~  333 (361)
T PLN02276        254 RSVRPRPGALVVNIGDTFMALSNGRYKSCLHRAVVNSERERRSLAFFLCPKEDKVVRPPQELVDREGPRKYPDFTWSDLL  333 (361)
T ss_pred             EEcCCCCCeEEEEcHHHHHHHhCCccccccceeecCCCCCEEEEEEEecCCCCCEEeCChHhcCCCCCCcCCCCCHHHHH
Confidence            99999999999999999999999999999999998888899999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhhhhHHHHHHHHhhhcC
Q 041132          344 HFTQNYFRADVKTLNAFSAWLQQHVN  369 (370)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (370)
                      ++..++.......++.|+++++..+|
T Consensus       334 ~~~~~~~~~~~~~l~~~~~~~~~~~~  359 (361)
T PLN02276        334 EFTQKHYRADMNTLQAFSNWLQSSNN  359 (361)
T ss_pred             HHHHHhcccchhHHHHHHHHHhccCC
Confidence            98877777777789999988855443

>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02216 protein SRG1 Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PLN03176 flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>TIGR02466 conserved hypothetical protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query370
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 4e-34
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 4e-34
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 1e-32
1w9y_A319 The Structure Of Acc Oxidase Length = 319 3e-25
3oox_A312 Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas 8e-18
2bjs_A325 Isopenicillin N Synthase C-Terminal Truncation Muta 1e-12
1ips_A331 Isopenicillin N Synthase From Aspergillus Nidulans 1e-12
3on7_A280 Crystal Structure Of A Putative Oxygenase (So_2589) 5e-08
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure 
Iteration: 1

 Score =  142 bits (357), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 103/355 (29%), Positives = 163/355 (45%), Gaps = 46/355 (12%)
Query: 28  TIPSQFIWPDGEKPSLE---LPELV-----IPPIDLCSFLSGDPFEVDKICQLVDEACKK 79
           +IP ++I P  E  S+    L E       +P IDL +  S D    +   + + +A   
Sbjct: 16  SIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLD 75
Query: 80  HGFFLVVNHGVDSMLIKKAHKYMDSFFATQLSKKQK--AQRKIGDHCGYSSSFTGRFSNK 137
            G   ++NHG+ + L+++  K  + FF+  + +K+K    +  G   GY S      S +
Sbjct: 76  WGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQ 135
Query: 138 LPWKETLTFRYRANDENSSTVVEDYFFNVM----GQDFRQFGKVYQEYCEAMSS------ 187
           L W                   EDYFF++      +D   + K   +Y EA S       
Sbjct: 136 LEW-------------------EDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLR 176
Query: 188 -LSLGIMELLGMSLGVGRAHFREFFQGHDSI---MRLNYYPPCQKPNLTLGTGPHCDPTS 243
            L+  + + L + LG+      +   G + +   M++NYYP C +P L LG   H D ++
Sbjct: 177 LLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSA 236
Query: 244 LTILHQDQVGGLQVYVDEQWQSVSPNPDAFVVNIGDTFMALSNGIYKSCLHRAAVNNTTV 303
           LT +  + V GLQ++ + +W +    PD+ V++IGDT   LSNG YKS LHR  VN   V
Sbjct: 237 LTFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKV 296
Query: 304 RKSLAFFLCPKMDKVVTPP-NNLVNANNPRIYPDFTWHNLLHFTQNYFRADVKTL 357
           R S A F  P  DK+V  P   +V+  +P  +P  T+    H     F  + + L
Sbjct: 297 RISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQ--HIEHKLFGKEQEEL 349
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 Back     alignment and structure
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant Length = 325 Back     alignment and structure
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Manganese Complex) Length = 331 Back     alignment and structure
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From Shewanella Oneidensis At 2.20 A Resolution Length = 280 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query370
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 1e-139
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 1e-112
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 1e-105
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 5e-78
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 5e-74
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 2e-67
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-05
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
 Score =  399 bits (1027), Expect = e-139
 Identities = 90/327 (27%), Positives = 153/327 (46%), Gaps = 22/327 (6%)

Query: 27  STIPSQFIWPDGEKPSLELPELV--------IPPIDLCSFLSGDPFEVDKICQLVDEACK 78
            +IP ++I P  E  S+    L         +P IDL +  S D    +   + + +A  
Sbjct: 16  ISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASL 75

Query: 79  KHGFFLVVNHGVDSMLIKKAHKYMDSFFATQLSKKQK--AQRKIGDHCGYSSSFTGRFSN 136
             G   ++NHG+ + L+++  K  + FF+  + +K+K    +  G   GY S      S 
Sbjct: 76  DWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASG 135

Query: 137 KLPWKETLTFRYRANDENSSTVVEDYFFNVMGQDFRQFGKVYQEYCEAMSSLSLGIMELL 196
           +L W++         ++           ++  +    + +   EY + +  L+  + + L
Sbjct: 136 QLEWEDYFFHLAYPEEKRD--------LSIWPKTPSDYIEATSEYAKCLRLLATKVFKAL 187

Query: 197 GMSLGVGRAHFREFFQGHDS---IMRLNYYPPCQKPNLTLGTGPHCDPTSLTILHQDQVG 253
            + LG+      +   G +     M++NYYP C +P L LG   H D ++LT +  + V 
Sbjct: 188 SVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVP 247

Query: 254 GLQVYVDEQWQSVSPNPDAFVVNIGDTFMALSNGIYKSCLHRAAVNNTTVRKSLAFFLCP 313
           GLQ++ + +W +    PD+ V++IGDT   LSNG YKS LHR  VN   VR S A F  P
Sbjct: 248 GLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEP 307

Query: 314 KMDKVVT-PPNNLVNANNPRIYPDFTW 339
             DK+V  P   +V+  +P  +P  T+
Sbjct: 308 PKDKIVLKPLPEMVSVESPAKFPPRTF 334
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query370
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 95.59
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 94.04
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 88.66
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 88.21
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 88.13
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 86.05
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 83.58
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
Probab=100.00  E-value=9.3e-80  Score=597.98  Aligned_cols=328  Identities=27%  Similarity=0.435  Sum_probs=293.4

Q ss_pred             hhHhHHHhhcCCCCCCCCCCCCCCCCCCCC----C----CCCcceeeCCCCCCCChHHHHHHHHHHHHHHHhccEEEEEe
Q 041132           16 LVFDASVLQFQSTIPSQFIWPDGEKPSLEL----P----ELVIPPIDLCSFLSGDPFEVDKICQLVDEACKKHGFFLVVN   87 (370)
Q Consensus        16 ~~~~~~~~~~~~~vp~~~~~p~~~~~~~~~----~----~~~iPvIDls~l~~~d~~~~~~~~~~l~~A~~~~Gff~l~n   87 (370)
                      .+|++++++++.+||++|++|+++++....    .    ..+||||||+.+.++|+++|.+++++|.+||++||||||+|
T Consensus         5 ~~v~~l~~~~~~~vP~~~~~p~~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFF~v~n   84 (356)
T 1gp6_A            5 ERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLIN   84 (356)
T ss_dssp             CCHHHHHHTTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEES
T ss_pred             ccHHHHHhcCCCCCCHHhcCCchhcccccccccccccccCCCCCEEEchhccCCChHHHHHHHHHHHHHHHhCCEEEEeC
Confidence            358999999999999999999887776321    1    24699999999987787788899999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHhhcCCHHHHHHhhccC--CCCccccCCCCCCcCCCCCcccccccccccCCCCCchhhhhhhcc
Q 041132           88 HGVDSMLIKKAHKYMDSFFATQLSKKQKAQRKI--GDHCGYSSSFTGRFSNKLPWKETLTFRYRANDENSSTVVEDYFFN  165 (370)
Q Consensus        88 hgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~--~~~~GY~~~~~~~~~~~~d~~E~~~~~~~~p~~~~~~~~~~~p~~  165 (370)
                      |||+.++++++++.+++||+||.|+|+++....  ..++||.........+..||+|.|.++.. |...  ...+.||..
T Consensus        85 HGi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~kE~~~~~~~-p~~~--~~~~~wP~~  161 (356)
T 1gp6_A           85 HGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAY-PEEK--RDLSIWPKT  161 (356)
T ss_dssp             CSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEE-SGGG--CCGGGSCCS
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCHHHHHhhcccccccCccccCcCcccCCCCCCChhheeeeecC-Cccc--cccccCCCc
Confidence            999999999999999999999999999998754  35889988766555678899999998765 4321  224566653


Q ss_pred             ccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHhhhc---CCceeEEEeccCCCCCCCCCCccccccCCC
Q 041132          166 VMGQDFRQFGKVYQEYCEAMSSLSLGIMELLGMSLGVGRAHFREFFQ---GHDSIMRLNYYPPCQKPNLTLGTGPHCDPT  242 (370)
Q Consensus       166 ~~~~~~~~fr~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~~~~~~~---~~~~~lr~~~Ypp~~~~~~~~g~~~HtD~~  242 (370)
                           ++.||+.+.+|+++|.+++..||++|+++||+++++|.+.+.   .+.+.||++|||||+.++..+|+++|||+|
T Consensus       162 -----~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g  236 (356)
T 1gp6_A          162 -----PSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVS  236 (356)
T ss_dssp             -----STTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCS
T ss_pred             -----chhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcccCCccceeeeeecCCCCCcccccCcCCccCCC
Confidence                 478999999999999999999999999999999999999887   477889999999999988899999999999


Q ss_pred             ceEEEecCCCCCeeeeeCCeeEEccCCCCeEEEEeccchhhccCCeeccccccCCCCCCCceEEEEEecCCCCCc-eEeC
Q 041132          243 SLTILHQDQVGGLQVYVDEQWQSVSPNPDAFVVNIGDTFMALSNGIYKSCLHRAAVNNTTVRKSLAFFLCPKMDK-VVTP  321 (370)
Q Consensus       243 ~lTlL~qd~~~GLqV~~~g~W~~V~p~pg~lvVnvGd~le~~TnG~~kS~~HRV~~~~~~~R~Si~~F~~P~~d~-~i~p  321 (370)
                      +||||+||.++||||+++|+|++|+|.||++|||+||+||+||||+|||+.|||++++.++|||++||++|+.|+ +|+|
T Consensus       237 ~lTlL~qd~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~l~~~TnG~~kS~~HRVv~~~~~~R~Sia~F~~P~~d~~~i~p  316 (356)
T 1gp6_A          237 ALTFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKP  316 (356)
T ss_dssp             SEEEEEECSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECC
T ss_pred             eEEEEEEcCCCCeEEecCCcEEECcCCCCeEEEEeccHHHHhcCCEeeccCceecCCCCCCEEEEEEeecCCCCCcEEeC
Confidence            999999999999999999999999999999999999999999999999999999998888999999999999999 9999


Q ss_pred             CCCCcCCCCCCCCCCcCHHHHHHHHHHhhh
Q 041132          322 PNNLVNANNPRIYPDFTWHNLLHFTQNYFR  351 (370)
Q Consensus       322 ~~~~v~~~~p~~y~~~~~~ey~~~~~~~~~  351 (370)
                      +++++++++|++|+++|++||+........
T Consensus       317 l~~~~~~~~p~~y~~~t~~eyl~~~~~~~~  346 (356)
T 1gp6_A          317 LPEMVSVESPAKFPPRTFAQHIEHKLFGKE  346 (356)
T ss_dssp             CGGGCCSSSCCSSCCEEHHHHHHHHHHHHH
T ss_pred             ChhhcCCCCCccCCCccHHHHHHHHHHhcc
Confidence            999999999999999999999986444333
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 370
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 1e-69
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 7e-54
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 5e-48
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 5e-46
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  220 bits (561), Expect = 1e-69
 Identities = 89/331 (26%), Positives = 152/331 (45%), Gaps = 22/331 (6%)

Query: 27  STIPSQFIWPDGEKPSLELPELV--------IPPIDLCSFLSGDPFEVDKICQLVDEACK 78
            +IP ++I P  E  S+    L         +P IDL +  S D    +   + + +A  
Sbjct: 15  ISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASL 74

Query: 79  KHGFFLVVNHGVDSMLIKKAHKYMDSFFATQLSKKQ--KAQRKIGDHCGYSSSFTGRFSN 136
             G   ++NHG+ + L+++  K  + FF+  + +K+     +  G   GY S      S 
Sbjct: 75  DWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASG 134

Query: 137 KLPWKETLTFRYRANDENSSTVVEDYFFNVMGQDFRQFGKVYQEYCEAMSSLSLGIMELL 196
           +L W++         +            ++  +    + +   EY + +  L+  + + L
Sbjct: 135 QLEWEDYFFHLAYPEE--------KRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKAL 186

Query: 197 GMSLGVGRAHFREFFQGHD---SIMRLNYYPPCQKPNLTLGTGPHCDPTSLTILHQDQVG 253
            + LG+      +   G +     M++NYYP C +P L LG   H D ++LT +  + V 
Sbjct: 187 SVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVP 246

Query: 254 GLQVYVDEQWQSVSPNPDAFVVNIGDTFMALSNGIYKSCLHRAAVNNTTVRKSLAFFLCP 313
           GLQ++ + +W +    PD+ V++IGDT   LSNG YKS LHR  VN   VR S A F  P
Sbjct: 247 GLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEP 306

Query: 314 KMDKVV-TPPNNLVNANNPRIYPDFTWHNLL 343
             DK+V  P   +V+  +P  +P  T+   +
Sbjct: 307 PKDKIVLKPLPEMVSVESPAKFPPRTFAQHI 337
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query370
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 89.49
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=8.1e-76  Score=567.54  Aligned_cols=320  Identities=28%  Similarity=0.464  Sum_probs=281.5

Q ss_pred             HhHHHhhcCCCCCCCCCCCCCCCCCCC--------CCCCCcceeeCCCCCCCChHHHHHHHHHHHHHHHhccEEEEEecC
Q 041132           18 FDASVLQFQSTIPSQFIWPDGEKPSLE--------LPELVIPPIDLCSFLSGDPFEVDKICQLVDEACKKHGFFLVVNHG   89 (370)
Q Consensus        18 ~~~~~~~~~~~vp~~~~~p~~~~~~~~--------~~~~~iPvIDls~l~~~d~~~~~~~~~~l~~A~~~~Gff~l~nhg   89 (370)
                      |+++|++|+..||++|++|+.++|+..        ....+||||||+.+.++|++.|++++++|.+||+++|||||+|||
T Consensus         6 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~IPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nHG   85 (349)
T d1gp6a_           6 VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHG   85 (349)
T ss_dssp             HHHHHHTTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEESCS
T ss_pred             hHHHHhCCCccCCHhhcCChhhcCCCCccccccccCCCCCcCeEEChhcCCCCHHHHHHHHHHHHHHHHhCCEEEEEccC
Confidence            999999999999999999998888752        145689999999999989989999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhhcCCHHHHHHhhccC--CCCccccCCCCCCcCCCCCcccccccccccCCCCCchhhhhhhcccc
Q 041132           90 VDSMLIKKAHKYMDSFFATQLSKKQKAQRKI--GDHCGYSSSFTGRFSNKLPWKETLTFRYRANDENSSTVVEDYFFNVM  167 (370)
Q Consensus        90 i~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~--~~~~GY~~~~~~~~~~~~d~~E~~~~~~~~p~~~~~~~~~~~p~~~~  167 (370)
                      |+.+++++++++++.||+||.|+|+++....  +.+.||+....+...+..++.+.+..... +..  ....+.||.   
T Consensus        86 I~~~li~~~~~~~~~FF~lP~eeK~k~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~n~wp~---  159 (349)
T d1gp6a_          86 IPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAY-PEE--KRDLSIWPK---  159 (349)
T ss_dssp             CCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEE-SGG--GCCGGGSCC---
T ss_pred             CCHHHHHHHHHHHHHHHcCCHHHHhhhhcccccCCccccccccccccccccchhhhhccccc-ccc--ccccccccc---
Confidence            9999999999999999999999999997632  23455655555555566777665543222 221  122445554   


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHhhhc---CCceeEEEeccCCCCCCCCCCccccccCCCce
Q 041132          168 GQDFRQFGKVYQEYCEAMSSLSLGIMELLGMSLGVGRAHFREFFQ---GHDSIMRLNYYPPCQKPNLTLGTGPHCDPTSL  244 (370)
Q Consensus       168 ~~~~~~fr~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~~~~~~~---~~~~~lr~~~Ypp~~~~~~~~g~~~HtD~~~l  244 (370)
                        ..+.|++.+.+|+++|.+++..|+++++++||+++++|.+.+.   ...+.||++|||+++.+...+|+++|||+|+|
T Consensus       160 --~~~~f~e~~~~~~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~g~l  237 (349)
T d1gp6a_         160 --TPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSAL  237 (349)
T ss_dssp             --SSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSE
T ss_pred             --ccchHHHHHHHHHHHHHHHHHhhhHHHHHHcCCCHHHHHHHhccccccceeeeecccccccchhhccccccCCCCcce
Confidence              4478999999999999999999999999999999999988773   45678999999999998889999999999999


Q ss_pred             EEEecCCCCCeeeeeCCeeEEccCCCCeEEEEeccchhhccCCeeccccccCCCCCCCceEEEEEecCCCCCceE-eCCC
Q 041132          245 TILHQDQVGGLQVYVDEQWQSVSPNPDAFVVNIGDTFMALSNGIYKSCLHRAAVNNTTVRKSLAFFLCPKMDKVV-TPPN  323 (370)
Q Consensus       245 TlL~qd~~~GLqV~~~g~W~~V~p~pg~lvVnvGd~le~~TnG~~kS~~HRV~~~~~~~R~Si~~F~~P~~d~~i-~p~~  323 (370)
                      |||+|+.++||||+++|+|++|+|.+|++|||+||+||+||||+|||++|||+.+++++||||+||++|+.|++| +|++
T Consensus       238 TlL~q~~~~GLqv~~~g~W~~V~p~~~a~vVNvGD~l~~~TnG~~~St~HRVv~~~~~~R~Si~~F~~p~~d~~i~~pl~  317 (349)
T d1gp6a_         238 TFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLP  317 (349)
T ss_dssp             EEEEECSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECCCG
T ss_pred             EEEeccCCcceeeecCCceEEccCCCCCeeeeHHhHHHHHhCCCccCcCccccCCCCCCeEEEEEEecCCCcceeecCCH
Confidence            999999999999999999999999999999999999999999999999999999988999999999999999865 8999


Q ss_pred             CCcCCCCCCCCCCcCHHHHHHH
Q 041132          324 NLVNANNPRIYPDFTWHNLLHF  345 (370)
Q Consensus       324 ~~v~~~~p~~y~~~~~~ey~~~  345 (370)
                      +||++++|++|+++|++||++.
T Consensus       318 ~~v~~~~p~~y~~~t~~e~~~~  339 (349)
T d1gp6a_         318 EMVSVESPAKFPPRTFAQHIEH  339 (349)
T ss_dssp             GGCCSSSCCSSCCEEHHHHHHH
T ss_pred             HHcCCCCCCCCCCccHHHHHHH
Confidence            9999999999999999999985
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure