Citrus Sinensis ID: 041158

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
MASSSSSPRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSERYASSGWCLDELLKILECKHVYGQIVIPVFCRVDPSHVRWQT
Secondary Structure (PSIPRED)
cccccccccccccccEEEcccccccccccHHHHHHHHHHccccEEEcccccccccccHHHHHHHHHccEEEEEEcccccccHHHHHHHHHHHHcccccccEEEEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEEcccccHcHHHHHHHHHHHHHHHccccEEEcccccccccccHHHHHHHHHccEEEEEEEccccccHHHHHHHHHHHHHHHHcccEEEEEEEEccHHHHHccc
Coil and Loop (DISEMBL)
masssssprnsnkhgiflsfrgedtrdnFTSHLYSALCHNnietfidndlkrgdEISQSLLDTIEASTISIIIFSeryassgwcLDELLKILEckhvygqivipvfcrvdpshvrwqt
Flexible Loop (DISEMBL)
masssssprnsnkhgiFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSERYASSGWCLDELLKILECKHVYGQIVIPVFCRVDPSHVRWQT
Low Complexity Region (SEG)
MAsssssPRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSERYASSGWCLDELLKILECKHVYGQIVIPVFCRVDPSHVRWQT
Disordered region (IsUnstruct)
***************IFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSERYASSGWCLDELLKILECKHVYGQIVIPVFCRVDPSH*****
Disordered Region (DISOPRED)
***********NKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSERYASSGWCLDELLKILECKHVYGQIVIPVFCRVDPSHVRWQ*
Disordered Region (DISEMBL)
************KHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSERYASSGWCLDELLKILECKHVYGQIVIPVFCRVDPSHVRWQT
Disordered Region (DISPRO)
*********NSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSERYASSGWCLDELLKILECKHVYGQIVIPVFCRVDPSH*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASSSSSPRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSERYASSGWCLDELLKILECKHVYGQIVIPVFCRVDPSHVRWQT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	118	2.2.26 [Sep-21-2011]
Q40392	1144	TMV resistance protein N	N/A	no	0.881	0.090	0.552	4e-26
O82500	1095	Putative disease resistan	no	no	0.974	0.105	0.516	4e-26
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.957	0.086	0.491	3e-22
Q9FHE9	354	Protein PHLOEM PROTEIN 2-	no	no	0.957	0.319	0.403	5e-17
Q9C5Q9	411	Protein PHLOEM PROTEIN 2-	no	no	0.796	0.228	0.463	5e-16
Q9FHE8	392	Protein PHLOEM PROTEIN 2-	no	no	0.966	0.290	0.432	4e-15
Q9SYC9	571	Vesicle-associated protei	no	no	0.906	0.187	0.356	2e-13
Q9FL92	1372	Probable WRKY transcripti	no	no	0.737	0.063	0.326	5e-06

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score =  116 bits (291), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 58/105 (55%), Positives = 72/105 (68%), Gaps = 1/105 (0%)

Query: 14  HGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDND-LKRGDEISQSLLDTIEASTISII 72
           + +FLSFRGEDTR  FTSHLY  L    I+TF D+  L+ G  I   L   IE S  +I+
Sbjct: 12  YDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELCKAIEESQFAIV 71

Query: 73  IFSERYASSGWCLDELLKILECKHVYGQIVIPVFCRVDPSHVRWQ 117
           +FSE YA+S WCL+EL+KI+ECK  + Q VIP+F  VDPSHVR Q
Sbjct: 72  VFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQ 116

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Nicotiana glutinosa (taxid: 35889)

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score =  116 bits (290), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 61/118 (51%), Positives = 77/118 (65%), Gaps = 3/118 (2%)

Query: 1   MASSSSSPRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSL 60
           MASSSS   NS ++ +F SFRGED R+NF SHL        I TF D+ +KR   I   L
Sbjct: 1   MASSSS---NSWRYDVFPSFRGEDVRNNFLSHLLKEFESKGIVTFRDDHIKRSHTIGHEL 57

Query: 61  LDTIEASTISIIIFSERYASSGWCLDELLKILECKHVYGQIVIPVFCRVDPSHVRWQT 118
              I  S IS+++FSE YASS WCLDEL++I++CK   G  V+PVF +VDPS +R QT
Sbjct: 58  RAAIRESKISVVLFSENYASSSWCLDELIEIMKCKEEQGLKVMPVFYKVDPSDIRKQT 115

Arabidopsis thaliana (taxid: 3702)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score =  103 bits (257), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 58/118 (49%), Positives = 77/118 (65%), Gaps = 5/118 (4%)

Query: 1   MASSSSSPRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSL 60
           +ASSS S R    + +F SFRGED RD+F SHL   L    I TFID++++R   I   L
Sbjct: 3   IASSSGSRR----YDVFPSFRGEDVRDSFLSHLLKELRGKAI-TFIDDEIERSRSIGPEL 57

Query: 61  LDTIEASTISIIIFSERYASSGWCLDELLKILECKHVYGQIVIPVFCRVDPSHVRWQT 118
           L  I+ S I+I+IFS+ YASS WCL+EL++I +C     Q+VIP+F  VD S V+ QT
Sbjct: 58  LSAIKESRIAIVIFSKNYASSTWCLNELVEIHKCYTNLNQMVIPIFFHVDASEVKKQT 115

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE9|P2A08_ARATH Protein PHLOEM PROTEIN 2-LIKE A8 OS=Arabidopsis thaliana GN=PP2A8 PE=2 SV=1

 Score = 86.3 bits (212), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 46/114 (40%), Positives = 68/114 (59%), Gaps = 1/114 (0%)

Query: 1   MASSSSSPRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSL 60
           MA+SSS         +F++FRG+D R+ F S L  A+   NI  FID D   G ++  +L
Sbjct: 1   MAASSSVRPTPTGPQVFINFRGKDLRNGFLSFLEPAMREANINVFIDKDEVVGTDLV-NL 59

Query: 61  LDTIEASTISIIIFSERYASSGWCLDELLKILECKHVYGQIVIPVFCRVDPSHV 114
              I+ S ++++IFS+ Y SS WCLDEL +I +C +  G   IP+F ++ PS V
Sbjct: 60  FVRIQESRVAVVIFSKDYTSSEWCLDELAEIKDCINQGGLNAIPIFYKLAPSSV 113

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5Q9|P2A05_ARATH Protein PHLOEM PROTEIN 2-LIKE A5 OS=Arabidopsis thaliana GN=PP2A5 PE=2 SV=1

 Score = 82.8 bits (203), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 44/95 (46%), Positives = 58/95 (61%), Gaps = 1/95 (1%)

Query: 16  IFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFS 75
           +F++FRG+D R  F S L  AL    I  FID   +RG  +  SL DTI  S I+++IFS
Sbjct: 24  VFINFRGKDLRKGFMSFLKPALKKEKINVFIDEQEERGKYLI-SLFDTIGESKIALVIFS 82

Query: 76  ERYASSGWCLDELLKILECKHVYGQIVIPVFCRVD 110
           E Y  S WC+DEL+KI E       I+IP+F R+D
Sbjct: 83  EGYCESHWCMDELVKIKEYMDQNRLIIIPIFYRLD 117

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE8|P2A06_ARATH Protein PHLOEM PROTEIN 2-LIKE A6 OS=Arabidopsis thaliana GN=PP2A6 PE=2 SV=1

 Score = 80.1 bits (196), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 51/118 (43%), Positives = 69/118 (58%), Gaps = 4/118 (3%)

Query: 1   MASSSS--SPRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQ 58
           MASSSS   P  +    +F+ FRG D R +F S L  AL   NI  FID +   G E++ 
Sbjct: 1   MASSSSVVKPTPTGPQ-VFICFRGADVRKHFISFLVPALREANINVFIDENEFLGSEMA- 58

Query: 59  SLLDTIEASTISIIIFSERYASSGWCLDELLKILECKHVYGQIVIPVFCRVDPSHVRW 116
           +LL  IE S ++++IFS  +  S  CL+EL KI E K     IVIP+F +V PS V++
Sbjct: 59  NLLTRIEESELALVIFSVDFTRSHRCLNELAKIKERKDQGRLIVIPIFYKVKPSAVKF 116

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1

 Score = 73.9 bits (180), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/115 (35%), Positives = 65/115 (56%), Gaps = 8/115 (6%)

Query: 5   SSSPRNSNKHGI-------FLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEIS 57
           S++  +++ HGI       F++FRG++ R++F   L  A+    I  F D    RG  ++
Sbjct: 342 SNAASSTDDHGITLPQYQVFINFRGDELRNSFVGFLVKAMRLEKINVFTDEVELRGTNLN 401

Query: 58  QSLLDTIEASTISIIIFSERYASSGWCLDELLKILECKHVYGQIVIPVFCRVDPS 112
             L   IE S +++ IFSERY  S WCLDEL+K+ E       +V+PVF R++ +
Sbjct: 402 Y-LFRRIEESRVAVAIFSERYTESCWCLDELVKMKEQMEQGKLVVVPVFYRLNAT 455

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 8/95 (8%)

Query: 23  EDTRDNFTSHLYSALCHNNI-ETFIDNDLKRGDEISQSLLDTIEASTISIIIFSERYASS 81
           E+ R +F SHL  AL    + + FID+D    D +S      +E + +S++I       S
Sbjct: 14  EEVRYSFVSHLSKALQRKGVNDVFIDSD----DSLSNESQSMVERARVSVMILPGNRTVS 69

Query: 82  GWCLDELLKILECKHVYGQIVIPVFCRVDPSHVRW 116
              LD+L+K+L+C+    Q+V+PV   V  S   W
Sbjct: 70  ---LDKLVKVLDCQKNKDQVVVPVLYGVRSSETEW 101

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May also act as a disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
255569048	1084	leucine-rich repeat-containing protein,	0.974	0.106	0.658	5e-37
224169680	120	predicted protein [Populus trichocarpa]	0.983	0.966	0.646	5e-37
224145016	1254	tir-nbs-lrr resistance protein [Populus	0.983	0.092	0.637	3e-35
224165730	162	predicted protein [Populus trichocarpa]	0.957	0.697	0.655	4e-35
351722793	299	TIR-NBS-LRR type disease resistance prot	1.0	0.394	0.585	6e-35
255561496	876	TMV resistance protein N, putative [Rici	0.966	0.130	0.641	7e-35
224145030	1435	tir-nbs-lrr resistance protein [Populus	0.983	0.080	0.629	9e-35
224143574	158	predicted protein [Populus trichocarpa]	0.898	0.670	0.679	1e-34
224145362	155	predicted protein [Populus trichocarpa]	0.898	0.683	0.679	1e-34
224127917	1470	tir-nbs-lrr resistance protein [Populus	0.974	0.078	0.643	2e-34

>gi|255569048|ref|XP_002525493.1| leucine-rich repeat-containing protein, putative [Ricinus communis] gi|223535172|gb|EEF36851.1| leucine-rich repeat-containing protein, putative [Ricinus communis]

 Score =  158 bits (399), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 77/117 (65%), Positives = 93/117 (79%), Gaps = 2/117 (1%)

Query: 1   MASSSSSPRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSL 60
           MASSS+SP+   K  +FLSFRG+DTRDNFTSHLY ALC   I+TFIDN L+RG+EI+ +L
Sbjct: 1   MASSSNSPKR--KFDVFLSFRGKDTRDNFTSHLYDALCRKKIKTFIDNGLERGEEITPAL 58

Query: 61  LDTIEASTISIIIFSERYASSGWCLDELLKILECKHVYGQIVIPVFCRVDPSHVRWQ 117
           L TIE S IS+I+FSE YASS WCLDE++KILEC+  +GQ V+PVF  VDPS V  Q
Sbjct: 59  LRTIEESLISVIVFSENYASSPWCLDEMVKILECRETHGQAVLPVFYHVDPSDVEEQ 115

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224169680|ref|XP_002339290.1| predicted protein [Populus trichocarpa] gi|222874825|gb|EEF11956.1| predicted protein [Populus trichocarpa]

 Score =  158 bits (399), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 75/116 (64%), Positives = 93/116 (80%)

Query: 3   SSSSSPRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLD 62
           +SSS+  +  K+ +FLSFRG+DTR+NFTSHLY ALC   I+TFIDN L+RG+EI+ +LL 
Sbjct: 2   ASSSAVAHKWKYDVFLSFRGQDTRNNFTSHLYDALCRKKIKTFIDNGLERGEEITPALLK 61

Query: 63  TIEASTISIIIFSERYASSGWCLDELLKILECKHVYGQIVIPVFCRVDPSHVRWQT 118
           TIE S IS++IFS+ YASS WC+DEL+KILECK  YGQIV+PVF  VDPS V  QT
Sbjct: 62  TIEESRISVVIFSKNYASSPWCVDELVKILECKETYGQIVLPVFYHVDPSEVDEQT 117

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145016|ref|XP_002325496.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862371|gb|EEE99877.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  152 bits (384), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 74/116 (63%), Positives = 91/116 (78%)

Query: 3   SSSSSPRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLD 62
           +SSSS  +  K+ +FLSFRGEDTR+NFTSHLY ALC   I+TFID+ L+RG+EI+ +LL 
Sbjct: 2   ASSSSVAHKRKYDVFLSFRGEDTRNNFTSHLYDALCRKKIKTFIDDGLERGEEITPALLK 61

Query: 63  TIEASTISIIIFSERYASSGWCLDELLKILECKHVYGQIVIPVFCRVDPSHVRWQT 118
            IE S IS++IFS+ YASS WC+DEL+KILECK   GQIV+PVF  VDPS V  QT
Sbjct: 62  KIEESRISVVIFSKNYASSPWCVDELVKILECKETCGQIVLPVFYHVDPSDVDEQT 117

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224165730|ref|XP_002338849.1| predicted protein [Populus trichocarpa] gi|222873666|gb|EEF10797.1| predicted protein [Populus trichocarpa]

 Score =  151 bits (382), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 76/116 (65%), Positives = 92/116 (79%), Gaps = 3/116 (2%)

Query: 1   MASSSSSPRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSL 60
           MASSS++ +   K+ +FLSFRG+DTRDNFTSHLY ALCH  I+TFIDNDL+RG+EI  +L
Sbjct: 1   MASSSTTAQQW-KYDVFLSFRGKDTRDNFTSHLYDALCHKQIKTFIDNDLERGEEIEPTL 59

Query: 61  LDTIEASTISIIIFSERYASSGWCLDELLKILECKHVYGQIVIP--VFCRVDPSHV 114
           L TIE S IS++IFS+ YASS WC+DEL+KILECK   GQIV+P   F  VDPS V
Sbjct: 60  LRTIEDSRISVVIFSKNYASSPWCVDELVKILECKRTCGQIVLPGFFFYHVDPSDV 115

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722793|ref|NP_001237768.1| TIR-NBS-LRR type disease resistance protein [Glycine max] gi|223452578|gb|ACM89616.1| TIR-NBS-LRR type disease resistance protein [Glycine max]

 Score =  151 bits (381), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 72/123 (58%), Positives = 92/123 (74%), Gaps = 5/123 (4%)

Query: 1   MASSSSSPRNSNK-----HGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDE 55
           MAS    P  ++K     H +FLSFRGEDTR  FTSHLY+AL    ++T+IDN+L+RGDE
Sbjct: 1   MASFVPPPPFTSKTPQQVHDVFLSFRGEDTRYTFTSHLYAALTRLQVKTYIDNELERGDE 60

Query: 56  ISQSLLDTIEASTISIIIFSERYASSGWCLDELLKILECKHVYGQIVIPVFCRVDPSHVR 115
           IS SLL  I+ + +++I+FSE YASS WCLDEL+KI+ECK   GQI++PVF  VDP+HVR
Sbjct: 61  ISPSLLRAIDDAKVAVIVFSENYASSRWCLDELVKIMECKRKNGQIIVPVFYHVDPTHVR 120

Query: 116 WQT 118
            QT
Sbjct: 121 HQT 123

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561496|ref|XP_002521758.1| TMV resistance protein N, putative [Ricinus communis] gi|223538971|gb|EEF40568.1| TMV resistance protein N, putative [Ricinus communis]

 Score =  150 bits (380), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 75/117 (64%), Positives = 90/117 (76%), Gaps = 3/117 (2%)

Query: 1   MASSSSSPRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSL 60
           MA  ++S +   K+ +FLSFRGEDTRDNFTSHLYSAL    I TF+D ++KRG+EIS S+
Sbjct: 1   MAPLATSEK---KYDVFLSFRGEDTRDNFTSHLYSALNKKKIFTFMDKEIKRGEEISPSI 57

Query: 61  LDTIEASTISIIIFSERYASSGWCLDELLKILECKHVYGQIVIPVFCRVDPSHVRWQ 117
              I+ S +S+IIFSE+YA S WCLDEL KILECK + GQIVIPVF RVDP HVR Q
Sbjct: 58  AKAIKGSKLSVIIFSEKYAFSKWCLDELTKILECKKMNGQIVIPVFYRVDPVHVRNQ 114

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145030|ref|XP_002325501.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862376|gb|EEE99882.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  150 bits (379), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 73/116 (62%), Positives = 92/116 (79%)

Query: 3   SSSSSPRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLD 62
           +SSS+  +  K+ +FLSFRG+DTR+NFTSHLY ALC   I+TFID+ L+RG EI+ +LL 
Sbjct: 2   ASSSAVAHKWKYDVFLSFRGKDTRNNFTSHLYDALCRKKIKTFIDDRLERGGEITPALLK 61

Query: 63  TIEASTISIIIFSERYASSGWCLDELLKILECKHVYGQIVIPVFCRVDPSHVRWQT 118
           TIE S IS++IFS+ YASS WC+DEL+KILECK  YGQIV+PVF  V+PS V  QT
Sbjct: 62  TIEESRISVVIFSKNYASSPWCVDELVKILECKETYGQIVLPVFYHVNPSDVDEQT 117

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143574|ref|XP_002336057.1| predicted protein [Populus trichocarpa] gi|222869690|gb|EEF06821.1| predicted protein [Populus trichocarpa]

 Score =  150 bits (378), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 72/106 (67%), Positives = 83/106 (78%)

Query: 13  KHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISII 72
           KH +FLSFRGEDTR  FTSHLY+AL    I TFID  L+RGDEIS SLL TIE + +S+I
Sbjct: 17  KHDLFLSFRGEDTRVGFTSHLYAALDRKQIRTFIDYQLRRGDEISASLLRTIEEAKLSVI 76

Query: 73  IFSERYASSGWCLDELLKILECKHVYGQIVIPVFCRVDPSHVRWQT 118
           +FSE YASS WCL+EL KI+E +   GQIVIPVF +VDPSHVR QT
Sbjct: 77  VFSENYASSKWCLEELAKIIERRRNNGQIVIPVFYKVDPSHVRNQT 122

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145362|ref|XP_002325614.1| predicted protein [Populus trichocarpa] gi|222862489|gb|EEE99995.1| predicted protein [Populus trichocarpa]

 Score =  150 bits (378), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 72/106 (67%), Positives = 84/106 (79%)

Query: 13  KHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISII 72
           K+ +FLSFRGEDTR  FTSHLY+AL    I TFID  L RGDEIS+SLL TIE + +S+I
Sbjct: 9   KYDVFLSFRGEDTRVGFTSHLYAALDRKQIRTFIDYQLVRGDEISESLLRTIEEAKLSVI 68

Query: 73  IFSERYASSGWCLDELLKILECKHVYGQIVIPVFCRVDPSHVRWQT 118
           +FSE YASS WCL+EL+KI EC+   GQIVIPVF +VDPSHVR QT
Sbjct: 69  VFSENYASSKWCLEELVKIFECRKNNGQIVIPVFYQVDPSHVRNQT 114

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127917|ref|XP_002329209.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870990|gb|EEF08121.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 74/115 (64%), Positives = 88/115 (76%)

Query: 4   SSSSPRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDT 63
           SSS+     K+ +FLSFRG+DTRDNF SHL  ALC   I+TFID+ L+RG+EI+ +LL T
Sbjct: 3   SSSAVAQKWKYDVFLSFRGKDTRDNFVSHLRDALCRKQIKTFIDDKLERGEEITGALLRT 62

Query: 64  IEASTISIIIFSERYASSGWCLDELLKILECKHVYGQIVIPVFCRVDPSHVRWQT 118
           IE S IS+IIFS  YASS WC+DEL+KILECK  YGQIV+PVF  VDPS V  QT
Sbjct: 63  IEESRISVIIFSRNYASSPWCVDELVKILECKKAYGQIVLPVFYHVDPSDVDQQT 117

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
TAIR|locus:1006230150	313	AT2G20142 [Arabidopsis thalian	0.889	0.335	0.509	6.8e-24
UNIPROTKB|Q40392	1144	N "TMV resistance protein N" [	0.974	0.100	0.525	1.1e-23
TAIR|locus:2118106	1219	AT4G12010 [Arabidopsis thalian	0.906	0.087	0.527	1.2e-23
TAIR|locus:2032718	380	AT1G72910 [Arabidopsis thalian	0.915	0.284	0.477	1.4e-23
TAIR|locus:2010738	1007	WRR4 "WHITE RUST RESISTANCE 4"	0.991	0.116	0.483	3e-23
TAIR|locus:2130319	796	RLM3 "RESISTANCE TO LEPTOSPHAE	0.923	0.136	0.513	3.2e-23
TAIR|locus:2136108	1095	AT4G11170 [Arabidopsis thalian	0.923	0.099	0.504	7.1e-23
TAIR|locus:2032733	176	TIR "toll/interleukin-1 recept	0.915	0.613	0.458	1.3e-22
TAIR|locus:2163426	1187	TAO1 "target of AVRB operation	0.881	0.087	0.509	5.7e-22
TAIR|locus:2151491	1123	AT5G46450 [Arabidopsis thalian	0.991	0.104	0.457	6.7e-22

TAIR|locus:1006230150 AT2G20142 [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 54/106 (50%), Positives = 70/106 (66%)

Query:    13 KHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISII 72
             KH +F+SFR +DTRDNF SHL   L    I+TF+ ++L   DE  +  L  IE S IS+I
Sbjct:     8 KHDVFISFRSKDTRDNFVSHLCGCLRRKRIKTFLYDELP-ADERYEESLKAIEVSKISVI 66

Query:    73 IFSERYASSGWCLDELLKILECKHVYGQIVIPVFCRVDPSHVRWQT 118
             +FSE +  S WCLDE++ IL+CK  +GQIVIPV   VDP  +  QT
Sbjct:    67 VFSENFGDSRWCLDEVVAILKCKEKFGQIVIPVLYHVDPLDIENQT 112

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|Q40392 N "TMV resistance protein N" [Nicotiana glutinosa (taxid:35889)]

 Score = 285 (105.4 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 62/118 (52%), Positives = 76/118 (64%)

Query:     1 MAXXXXXPRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDND-LKRGDEISQS 59
             MA      R S  + +FLSFRGEDTR  FTSHLY  L    I+TF D+  L+ G  I   
Sbjct:     1 MASSSSSSRWS--YDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGE 58

Query:    60 LLDTIEASTISIIIFSERYASSGWCLDELLKILECKHVYGQIVIPVFCRVDPSHVRWQ 117
             L   IE S  +I++FSE YA+S WCL+EL+KI+ECK  + Q VIP+F  VDPSHVR Q
Sbjct:    59 LCKAIEESQFAIVVFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQ 116

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2118106 AT4G12010 [Arabidopsis thaliana (taxid:3702)]

 Score = 285 (105.4 bits), Expect = 1.2e-23, P = 1.2e-23
 Identities = 57/108 (52%), Positives = 78/108 (72%)

Query:    10 NSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTI 69
             +S +  +FLSFRG DTR+NFT HL  AL    I++FID+ L+RGD ++ +L D IE S I
Sbjct:     7 SSAEFDVFLSFRGFDTRNNFTGHLQKALRLRGIDSFIDDRLRRGDNLT-ALFDRIEKSKI 65

Query:    70 SIIIFSERYASSGWCLDELLKILECKHVYGQIVIPVFCRVDPSHVRWQ 117
             +II+FS  YA+S WCL EL+KILEC++   Q+V+P+F +VD S V  Q
Sbjct:    66 AIIVFSTNYANSAWCLRELVKILECRNSNQQLVVPIFYKVDKSDVEKQ 113

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2032718 AT1G72910 [Arabidopsis thaliana (taxid:3702)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 52/109 (47%), Positives = 72/109 (66%)

Query:    11 SNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDN-DLKRGDEISQSLLDTIEASTI 69
             + K+ +FLSFRG DTR NF S LY  L   +I TF D+ +L+ G  IS  L  TIE S  
Sbjct:     6 ATKYDVFLSFRGHDTRQNFISFLYKELVRRSIRTFKDDKELENGQRISSELKRTIEVSRF 65

Query:    70 SIIIFSERYASSGWCLDELLKILECKHVYGQIVIPVFCRVDPSHVRWQT 118
             ++++ SE YA+S WCLDEL+ I++ +      V+P+F  V+P+HVRWQT
Sbjct:    66 AVVVVSETYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQT 114

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2010738 WRR4 "WHITE RUST RESISTANCE 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 280 (103.6 bits), Expect = 3.0e-23, P = 3.0e-23
 Identities = 57/118 (48%), Positives = 73/118 (61%)

Query:     1 MAXXXXXPRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSL 60
             MA     PRN  ++ +F SF G D R  F SHL     +N I  F DN ++R   I+ +L
Sbjct:     1 MASSSSSPRNW-RYNVFTSFHGPDVRIKFLSHLRQQFVYNGITMFDDNGIERSQIIAPAL 59

Query:    61 LDTIEASTISIIIFSERYASSGWCLDELLKILECKHVYGQIVIPVFCRVDPSHVRWQT 118
                I  S ++I++ S+ YASS WCLDELL+IL+CK   GQIV+ VF  VDPSHVR QT
Sbjct:    60 KKAIGESRVAIVLLSKNYASSSWCLDELLEILKCKEYIGQIVMTVFYEVDPSHVRKQT 117

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP

TAIR|locus:2130319 RLM3 "RESISTANCE TO LEPTOSPHAERIA MACULANS 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 3.2e-23, P = 3.2e-23
 Identities = 56/109 (51%), Positives = 73/109 (66%)

Query:    10 NSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTI 69
             +S  + +F +FRGED R +  SHL   L    I TF DN ++R  +I+  LL  IE S I
Sbjct:     5 SSQSYDVFPNFRGEDVRHSLVSHLRKELDRKFINTFNDNRIERSRKITPELLLAIENSRI 64

Query:    70 SIIIFSERYASSGWCLDELLKILECKHVYGQIVIPVFCRVDPSHVRWQT 118
             S+++FS+ YASS WCLDEL+KI EC     Q+VIP+F +VDPSHVR QT
Sbjct:    65 SLVVFSKNYASSTWCLDELVKIQECYEKLDQMVIPIFYKVDPSHVRKQT 113

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP

GO:0009861 "jasmonic acid and ethylene-dependent systemic resistance" evidence=IMP

GO:2000071 "regulation of defense response by callose deposition" evidence=IMP

GO:0015979 "photosynthesis" evidence=RCA

TAIR|locus:2136108 AT4G11170 [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 7.1e-23, P = 7.1e-23
 Identities = 55/109 (50%), Positives = 71/109 (65%)

Query:    10 NSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTI 69
             NS ++ +F SFRGED R+NF SHL        I TF D+ +KR   I   L   I  S I
Sbjct:     7 NSWRYDVFPSFRGEDVRNNFLSHLLKEFESKGIVTFRDDHIKRSHTIGHELRAAIRESKI 66

Query:    70 SIIIFSERYASSGWCLDELLKILECKHVYGQIVIPVFCRVDPSHVRWQT 118
             S+++FSE YASS WCLDEL++I++CK   G  V+PVF +VDPS +R QT
Sbjct:    67 SVVLFSENYASSSWCLDELIEIMKCKEEQGLKVMPVFYKVDPSDIRKQT 115

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0010193 "response to ozone" evidence=IEP

TAIR|locus:2032733 TIR "toll/interleukin-1 receptor-like" [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 50/109 (45%), Positives = 70/109 (64%)

Query:    11 SNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDN-DLKRGDEISQSLLDTIEASTI 69
             + K+ +FLSFRG DTR NF S LY  L   +I TF D+ +L+ G   S  L   IE S  
Sbjct:     6 ATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRF 65

Query:    70 SIIIFSERYASSGWCLDELLKILECKHVYGQIVIPVFCRVDPSHVRWQT 118
             ++++ SE YA+S WCLDEL+ I++ +      V+P+F  V+P+HVRWQT
Sbjct:    66 AVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQT 114

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2163426 TAO1 "target of AVRB operation1" [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 5.7e-22, P = 5.7e-22
 Identities = 53/104 (50%), Positives = 65/104 (62%)

Query:    14 HGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIII 73
             H +FLSFRGED R    SH+      N I  FIDN++KRG  I   LL  I  S I+II+
Sbjct:    40 HPVFLSFRGEDVRKGLLSHIQKEFQRNGITPFIDNEMKRGGSIGPELLQAIRGSKIAIIL 99

Query:    74 FSERYASSGWCLDELLKILECKHVYGQIVIPVFCRVDPSHVRWQ 117
              S  Y SS WCLDEL++I++C+   GQ V+ VF  VDPS VR Q
Sbjct:   100 LSRNYGSSKWCLDELVEIMKCREELGQTVMTVFYDVDPSDVRKQ 143

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2151491 AT5G46450 [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 6.7e-22, P = 6.7e-22
 Identities = 54/118 (45%), Positives = 75/118 (63%)

Query:     1 MAXXXXXPRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSL 60
             MA      RN + + +F SF GED R  F SH    L   +I TF DN+++R   I+  L
Sbjct:     1 MASSSSSSRNWS-YDVFPSFSGEDVRKTFLSHFLRELERKSIITFKDNEMERSQSIAPEL 59

Query:    61 LDTIEASTISIIIFSERYASSGWCLDELLKILECKHVYGQIVIPVFCRVDPSHVRWQT 118
             ++ I+ S I++I+FS+ YASS WCL+ELL+I+ C    GQ VIPVF  +DPSH+R Q+
Sbjct:    60 VEAIKDSRIAVIVFSKNYASSSWCLNELLEIMRCNKYLGQQVIPVFYYLDPSHLRKQS 117

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	118
PLN03210	1153	PLN03210, PLN03210, Resistant to P	4e-35
pfam01582	135	pfam01582, TIR, TIR domain	4e-34
smart00255	140	smart00255, TIR, Toll - interleukin 1 - resistance	2e-30
PLN03194	187	PLN03194, PLN03194, putative disease resistance pr	8e-17
pfam13676	102	pfam13676, TIR_2, TIR domain	3e-11

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score =  126 bits (318), Expect = 4e-35
 Identities = 59/118 (50%), Positives = 74/118 (62%), Gaps = 1/118 (0%)

Query: 1   MASSSSSPRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSL 60
           MASSSSS RN     +F SF GED R  F SH    L    I  F DN+++R   +   L
Sbjct: 1   MASSSSSSRNWVYD-VFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPEL 59

Query: 61  LDTIEASTISIIIFSERYASSGWCLDELLKILECKHVYGQIVIPVFCRVDPSHVRWQT 118
              I  S I++++FS+ YASS WCL+ELL+I+ CK   GQ+VIPVF  +DPSHVR QT
Sbjct: 60  KQAIRDSRIAVVVFSKNYASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQT 117

syringae 6; Provisional. Length = 1153

>gnl|CDD|216585 pfam01582, TIR, TIR domain

 Score =  114 bits (287), Expect = 4e-34
 Identities = 48/105 (45%), Positives = 69/105 (65%), Gaps = 3/105 (2%)

Query: 17  FLSFRGEDTRDNFTSHLYSALCHNNIETFIDN-DLKRGDEISQSLLDTIEASTISIIIFS 75
           F+SF G+D RD F SHL   L    I+  ID+ D   G+ I ++L + IE S  +I+IFS
Sbjct: 2   FVSFSGKDDRDTFVSHLLKELEEKGIKLCIDDRDELPGESILENLFEAIEKSRRAIVIFS 61

Query: 76  ERYASSGWCLDELLKILECKHVYG--QIVIPVFCRVDPSHVRWQT 118
             YASS WCLDEL++I++C    G  ++++P+F +VDPS VR Q+
Sbjct: 62  SNYASSEWCLDELVEIVKCALEGGGKKVILPIFYKVDPSDVRPQS 106

The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades. Length = 135

>gnl|CDD|214587 smart00255, TIR, Toll - interleukin 1 - resistance

 Score =  105 bits (263), Expect = 2e-30
 Identities = 43/108 (39%), Positives = 62/108 (57%), Gaps = 3/108 (2%)

Query: 13  KHGIFLSFRG-EDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISI 71
           ++ +F+S+ G ED R+ F SHL   L    +  FID+    G ++ + + + IE S I+I
Sbjct: 1   EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDL-EEIDEAIEKSRIAI 59

Query: 72  IIFSERYASSGWCLDELLKILECKHVYGQI-VIPVFCRVDPSHVRWQT 118
           ++ S  YA S WCLDEL+  LE     G + VIP+F  V PS VR Q 
Sbjct: 60  VVLSPNYAESEWCLDELVAALENALEEGGLRVIPIFYEVIPSDVRKQP 107

Length = 140

>gnl|CDD|215626 PLN03194, PLN03194, putative disease resistance protein; Provisional

 Score = 71.8 bits (176), Expect = 8e-17
 Identities = 39/111 (35%), Positives = 61/111 (54%), Gaps = 5/111 (4%)

Query: 6   SSPRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDN-DLKRGDEISQSLLDTI 64
           SS  ++    +F++ RG DT+    + LY  L   N+  F+DN ++K GD++   +   I
Sbjct: 19  SSSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAI 78

Query: 65  EASTISIIIFSERYASSGWCLDELLKILECKHVYGQIVIPVFCRVDPSHVR 115
               + + +FS RY  S +CL EL  I+E K    + VIP+FC V PS +R
Sbjct: 79  RNCKVGVAVFSPRYCESYFCLHELALIMESK----KRVIPIFCDVKPSQLR 125

Length = 187

>gnl|CDD|222311 pfam13676, TIR_2, TIR domain

 Score = 55.3 bits (134), Expect = 3e-11
 Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 8/97 (8%)

Query: 16  IFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFS 75
           +F+S+   D    +   L  AL    I  ++D D+  G++    + + + ++ + +++ S
Sbjct: 1   VFISYASADRE--WAEWLADALEAAGIRVWLDWDIPPGEDWRDEIEEALRSADVVLVLLS 58

Query: 76  ERYASSGWCLDELLKILECKHVYGQIVIPVFCRVDPS 112
             Y +S WC  E    LE     G+ +IPV  R++  
Sbjct: 59  PAYLASPWCRAEWGAALER----GKRLIPV--RLEDC 89

This is a family of bacterial Toll-like receptors. Length = 102

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	118
PLN03194	187	putative disease resistance protein; Provisional	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
smart00255	140	TIR Toll - interleukin 1 - resistance.	99.92
PF01582	141	TIR: TIR domain; InterPro: IPR000157 In Drosophila	99.91
PF13676	102	TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_	99.86
KOG3678	832	consensus SARM protein (with sterile alpha and arm	99.5
PF08937	130	DUF1863: MTH538 TIR-like domain (DUF1863); InterPr	99.02
PF08357	150	SEFIR: SEFIR domain; InterPro: IPR013568 This doma	98.5
PF10137	125	TIR-like: Predicted nucleotide-binding protein con	97.7
COG4916	329	Uncharacterized protein containing a TIR (Toll-Int	95.87
PF05014	113	Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransfer	95.68
PF13271	83	DUF4062: Domain of unknown function (DUF4062)	95.55
COG4271	233	Predicted nucleotide-binding protein containing TI	95.03
PF14359	92	DUF4406: Domain of unknown function (DUF4406)	92.14
cd00860	91	ThrRS_anticodon ThrRS Threonyl-anticodon binding d	90.48
cd00738	94	HGTP_anticodon HGTP anticodon binding domain, as f	88.34
PF03129	94	HGTP_anticodon: Anticodon binding domain; InterPro	86.56
cd00858	121	GlyRS_anticodon GlyRS Glycyl-anticodon binding dom	86.04
PF14258	70	DUF4350: Domain of unknown function (DUF4350)	85.24

>PLN03194 putative disease resistance protein; Provisional

Probab=100.00  E-value=1e-36  Score=215.77  Aligned_cols=104  Identities=36%  Similarity=0.695  Sum_probs=98.6

Q ss_pred             CCCeeeEEEEeeeccCccchHHHHHHHHccCCcceEEeCC-CCCCccchHHHHHHHHhcCeEEEEecCCccCchhhHHHH
Q 041158           10 NSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDND-LKRGDEISQSLLDTIEASTISIIIFSERYASSGWCLDEL   88 (118)
Q Consensus        10 ~~~~~dVFISys~~D~~~~fv~~L~~~L~~~Gi~v~~d~~-~~~G~~~~~~i~~~i~~s~~~I~v~S~~~~~S~wc~~El   88 (118)
                      ..+.|||||||++.|+++.|+.+|+.+|+++|+++|+|.. +++|+.+.+.|.+||++|+++|+|+||+|++|.||++||
T Consensus        23 ~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCLdEL  102 (187)
T PLN03194         23 SAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCLHEL  102 (187)
T ss_pred             CCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhHHHHH
Confidence            3457999999999999999999999999999999999997 999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhCCCEEEEEEeecCCCCcccC
Q 041158           89 LKILECKHVYGQIVIPVFCRVDPSHVRWQ  117 (118)
Q Consensus        89 ~~~~~~~~~~~~~iiPI~~~v~p~~v~~q  117 (118)
                      ..++++.    ..||||||+++|+||++|
T Consensus       103 ~~I~e~~----~~ViPIFY~VdPsdVr~q  127 (187)
T PLN03194        103 ALIMESK----KRVIPIFCDVKPSQLRVV  127 (187)
T ss_pred             HHHHHcC----CEEEEEEecCCHHHhhcc
Confidence            9999753    489999999999999997

>PLN03210 Resistant to P

Probab=100.00  E-value=2.7e-33  Score=241.23  Aligned_cols=117  Identities=48%  Similarity=0.772  Sum_probs=110.4

Q ss_pred             CCCCCCCCCCCCeeeEEEEeeeccCccchHHHHHHHHccCCcceEEeCCCCCCccchHHHHHHHHhcCeEEEEecCCccC
Q 041158            1 MASSSSSPRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSERYAS   80 (118)
Q Consensus         1 ~~~~~~~~~~~~~~dVFISys~~D~~~~fv~~L~~~L~~~Gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~I~v~S~~~~~   80 (118)
                      |++||| .++.+.|||||||+++|+++.|+.||+.+|.++||.+|.|++++.|+.+..++.+||++|++.|+|+|++|+.
T Consensus         1 ~~~~~~-~~~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~   79 (1153)
T PLN03210          1 MASSSS-SSRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYAS   79 (1153)
T ss_pred             CCCCCC-CCCCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccCCccCCCcccHHHHHHHHhCeEEEEEecCCccc
Confidence            566554 4467899999999999999999999999999999999998889999999999999999999999999999999


Q ss_pred             chhhHHHHHHHHHhhhhCCCEEEEEEeecCCCCcccCC
Q 041158           81 SGWCLDELLKILECKHVYGQIVIPVFCRVDPSHVRWQT  118 (118)
Q Consensus        81 S~wc~~El~~~~~~~~~~~~~iiPI~~~v~p~~v~~q~  118 (118)
                      |.||++||.++++|.++.+++||||||+|+|+|||+|+
T Consensus        80 s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~  117 (1153)
T PLN03210         80 SSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQT  117 (1153)
T ss_pred             chHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhcc
Confidence            99999999999999999999999999999999999985

syringae 6; Provisional

>smart00255 TIR Toll - interleukin 1 - resistance

Probab=99.92  E-value=7.8e-25  Score=147.79  Aligned_cols=103  Identities=41%  Similarity=0.663  Sum_probs=87.3

Q ss_pred             eeeEEEEeee-ccCccchHHHHHHHHccCCcceEEeCCCCCCccchHHHHHHHHhcCeEEEEecCCccCchhhHHHHHHH
Q 041158           13 KHGIFLSFRG-EDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSERYASSGWCLDELLKI   91 (118)
Q Consensus        13 ~~dVFISys~-~D~~~~fv~~L~~~L~~~Gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~I~v~S~~~~~S~wc~~El~~~   91 (118)
                      +|||||||++ .+..+.|+.+|...|...|+.+|.|+....|.... +|.++|++|+++|+++||+|+.|+||..|+..+
T Consensus         1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~~~-~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a   79 (140)
T smart00255        1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDLE-EIDEAIEKSRIAIVVLSPNYAESEWCLDELVAA   79 (140)
T ss_pred             CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcccccchHH-HHHHHHHHCcEEEEEECcccccChhHHHHHHHH
Confidence            5899999998 34446899999999999999999987643333333 999999999999999999999999999999999


Q ss_pred             HHhhhh-CCCEEEEEEeecCCCCccc
Q 041158           92 LECKHV-YGQIVIPVFCRVDPSHVRW  116 (118)
Q Consensus        92 ~~~~~~-~~~~iiPI~~~v~p~~v~~  116 (118)
                      .+...+ ...+||||+++..|+++..
T Consensus        80 ~~~~~~~~~~~iIPI~~~~~~~~~~~  105 (140)
T smart00255       80 LENALEEGGLRVIPIFYEVIPSDVRK  105 (140)
T ss_pred             HHHHHHcCCCeEEEEEEecChHHHHh
Confidence            987654 6789999999987765543

>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo

Probab=99.91  E-value=2.8e-25  Score=151.43  Aligned_cols=100  Identities=36%  Similarity=0.643  Sum_probs=88.8

Q ss_pred             EEEEeeeccCccchHHHHHHHHccC--CcceEEeCC-CCCCccchHHHHHHHHhcCeEEEEecCCccCchhhHHHHHHHH
Q 041158           16 IFLSFRGEDTRDNFTSHLYSALCHN--NIETFIDND-LKRGDEISQSLLDTIEASTISIIIFSERYASSGWCLDELLKIL   92 (118)
Q Consensus        16 VFISys~~D~~~~fv~~L~~~L~~~--Gi~v~~d~~-~~~G~~~~~~i~~~i~~s~~~I~v~S~~~~~S~wc~~El~~~~   92 (118)
                      |||||++.+++..|+.+|..+|+++  |+++|++++ +.+|..+.++|.++|++|+++|+|+|++|+.|.||+.|+..|+
T Consensus         1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~   80 (141)
T PF01582_consen    1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL   80 (141)
T ss_dssp             EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred             cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence            8999999333468999999999998  999999887 9999999999999999999999999999999999999999999


Q ss_pred             HhhhhC--CCEEEEEEeecCCCCcc
Q 041158           93 ECKHVY--GQIVIPVFCRVDPSHVR  115 (118)
Q Consensus        93 ~~~~~~--~~~iiPI~~~v~p~~v~  115 (118)
                      ++..+.  ...|+|+|+++.+++++
T Consensus        81 ~~~~~~~~~~~Il~v~~~v~~~~~~  105 (141)
T PF01582_consen   81 ERLLEEGRDKLILPVFYDVSPSDVR  105 (141)
T ss_dssp             HHHHCSTCTTEEEEESSSS-CHHCH
T ss_pred             hhccccccccceeeEeccCChhhcC
Confidence            987654  49999999999999887

In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....

>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A

Probab=99.86  E-value=1.8e-22  Score=130.25  Aligned_cols=87  Identities=31%  Similarity=0.553  Sum_probs=75.2

Q ss_pred             EEEEeeeccCccchHHHHHHHHccCCcceEEeCCCCCCccchHHHHHHHHhcCeEEEEecCCccCchhhHHHHHHHHHhh
Q 041158           16 IFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSERYASSGWCLDELLKILECK   95 (118)
Q Consensus        16 VFISys~~D~~~~fv~~L~~~L~~~Gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~I~v~S~~~~~S~wc~~El~~~~~~~   95 (118)
                      |||||+++|.  .+|..|...|+..|+++|+|+++.+|+.+.+.|.++|++|+++|+++||+|..|+||..|+..+.+  
T Consensus         1 VFIS~~~~D~--~~a~~l~~~L~~~g~~v~~d~~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~--   76 (102)
T PF13676_consen    1 VFISYSSEDR--EFAERLAERLESAGIRVFLDRDIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK--   76 (102)
T ss_dssp             EEEEEEGGGC--CCHHHHHHHHHHTT--EE-GGEE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC--
T ss_pred             eEEEecCCcH--HHHHHHHHHHhhcCCEEEEEEeCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH--
Confidence            8999999984  699999999999999999997799999999999999999999999999999999999999999843  


Q ss_pred             hhCCCEEEEEEee
Q 041158           96 HVYGQIVIPVFCR  108 (118)
Q Consensus        96 ~~~~~~iiPI~~~  108 (118)
                        .+.+||||.++
T Consensus        77 --~~~~iipv~~~   87 (102)
T PF13676_consen   77 --RGKPIIPVRLD   87 (102)
T ss_dssp             --TSESEEEEECS
T ss_pred             --CCCEEEEEEEC
Confidence              45589999974

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=99.50  E-value=5.9e-14  Score=111.71  Aligned_cols=92  Identities=27%  Similarity=0.441  Sum_probs=79.9

Q ss_pred             CCCeeeEEEEeeeccCccchHHHHHHHHccCCcceEEeCC-CCCCccchHHHHHHHHhcCeEEEEecCCccC--------
Q 041158           10 NSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDND-LKRGDEISQSLLDTIEASTISIIIFSERYAS--------   80 (118)
Q Consensus        10 ~~~~~dVFISys~~D~~~~fv~~L~~~L~~~Gi~v~~d~~-~~~G~~~~~~i~~~i~~s~~~I~v~S~~~~~--------   80 (118)
                      -+++.||||||+... ...++.-|...|+.+|++||+|-+ +..|+ |.+.+.+.|..++.+|+|++|+.+.        
T Consensus       609 ~skq~DVFISYRRst-GnQLASLiKV~LQL~GyrVFIDVdKL~AGK-FdssLlkni~aAkhFiLVLtP~sLDr~lnD~nC  686 (832)
T KOG3678|consen  609 LSKQIDVFISYRRST-GNQLASLIKVLLQLRGYRVFIDVDKLYAGK-FDSSLLKNIQAAKHFILVLTPNSLDRLLNDDNC  686 (832)
T ss_pred             ccCCcceEEEeeccc-cHHHHHHHHHHHHhcCceEEEehhhhhccc-ccHHHHHHHHhhheeEEEeCcchHHHHhccccH
Confidence            357899999998764 467999999999999999999988 98887 6678999999999999999999863        


Q ss_pred             chhhHHHHHHHHHhhhhCCCEEEEEEe
Q 041158           81 SGWCLDELLKILECKHVYGQIVIPVFC  107 (118)
Q Consensus        81 S~wc~~El~~~~~~~~~~~~~iiPI~~  107 (118)
                      -+|+.+|+..++++.+    .|||||-
T Consensus       687 eDWVHKEl~~Afe~~K----NIiPI~D  709 (832)
T KOG3678|consen  687 EDWVHKELKCAFEHQK----NIIPIFD  709 (832)
T ss_pred             HHHHHHHHHHHHHhcC----Ceeeeec
Confidence            6788999988887665    7999984

>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments

Probab=99.02  E-value=5.3e-10  Score=75.32  Aligned_cols=90  Identities=22%  Similarity=0.373  Sum_probs=49.3

Q ss_pred             eeEEEEeeeccCccchHHHHHHHHccC-------Ccce-EE---------eCC-CCCCccchHHHHHHHHhcCeEEEEec
Q 041158           14 HGIFLSFRGEDTRDNFTSHLYSALCHN-------NIET-FI---------DND-LKRGDEISQSLLDTIEASTISIIIFS   75 (118)
Q Consensus        14 ~dVFISys~~D~~~~fv~~L~~~L~~~-------Gi~v-~~---------d~~-~~~G~~~~~~i~~~i~~s~~~I~v~S   75 (118)
                      |.|||||++.|.. ..+..|...+...       ++.. |.         +.. ....+.+...|.+.|..|+++||+++
T Consensus         1 ~~vFIS~~~~d~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig   79 (130)
T PF08937_consen    1 YKVFISYSHDDDD-WYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG   79 (130)
T ss_dssp             ----------THH--HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred             CCccccccccCcH-HHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence            5799999999863 3777777777652       1211 11         111 22334678899999999999999999


Q ss_pred             CCccCchhhHHHHHHHHHhhhhCCCEEEEEEee
Q 041158           76 ERYASSGWCLDELLKILECKHVYGQIVIPVFCR  108 (118)
Q Consensus        76 ~~~~~S~wc~~El~~~~~~~~~~~~~iiPI~~~  108 (118)
                      ++...|.|+..|+..+++    .+..||-|.+.
T Consensus        80 ~~T~~s~wV~~EI~~A~~----~~~~Ii~V~~~  108 (130)
T PF08937_consen   80 PNTAKSKWVNWEIEYALK----KGKPIIGVYLP  108 (130)
T ss_dssp             TT----HHHHHHHHHHTT----T---EEEEETT
T ss_pred             CCcccCcHHHHHHHHHHH----CCCCEEEEECC
Confidence            999999999999998876    55688888763

The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.

>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e

Probab=98.50  E-value=1.2e-06  Score=59.81  Aligned_cols=64  Identities=19%  Similarity=0.318  Sum_probs=51.3

Q ss_pred             eEEEEeeeccCc-cchHHHHHHHHccC-CcceEEeCC-CCC--CccchHHHHHHHHhcCeEEEEecCCc
Q 041158           15 GIFLSFRGEDTR-DNFTSHLYSALCHN-NIETFIDND-LKR--GDEISQSLLDTIEASTISIIIFSERY   78 (118)
Q Consensus        15 dVFISys~~D~~-~~fv~~L~~~L~~~-Gi~v~~d~~-~~~--G~~~~~~i~~~i~~s~~~I~v~S~~~   78 (118)
                      -|||||++.... ...|..|...|++. |+.|.+|.. ...  +..+..=+.+.+++++.+|+|+||.+
T Consensus         2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~   70 (150)
T PF08357_consen    2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY   70 (150)
T ss_pred             eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence            499999985443 36799999999999 999999986 532  55555567778999999999999654

g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].

>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins

Probab=97.70  E-value=0.00015  Score=48.86  Aligned_cols=75  Identities=16%  Similarity=0.211  Sum_probs=61.0

Q ss_pred             EEEEeeeccCccchHHHHHHHHccCCcceEEeCC-CCCCccchHHHHHHHHhcCeEEEEecCCc-------------cCc
Q 041158           16 IFLSFRGEDTRDNFTSHLYSALCHNNIETFIDND-LKRGDEISQSLLDTIEASTISIIIFSERY-------------ASS   81 (118)
Q Consensus        16 VFISys~~D~~~~fv~~L~~~L~~~Gi~v~~d~~-~~~G~~~~~~i~~~i~~s~~~I~v~S~~~-------------~~S   81 (118)
                      |||.|+ .|.  .++..+...|+..|+.+.+=.. ...|..+.+.+.+.+.+|+..|++++|+=             ..-
T Consensus         2 VFIvhg-~~~--~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpDD~~~~~~~~~~~~~~aR   78 (125)
T PF10137_consen    2 VFIVHG-RDL--AAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPDDIGYSRGEEEDLQPRAR   78 (125)
T ss_pred             EEEEeC-CCH--HHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEcccccccccCCccccccccc
Confidence            899997 553  6899999999988887765444 78899999999999999999999999952             224


Q ss_pred             hhhHHHHHHHHH
Q 041158           82 GWCLDELLKILE   93 (118)
Q Consensus        82 ~wc~~El~~~~~   93 (118)
                      +.+..|+..++.
T Consensus        79 ~NVifE~G~f~g   90 (125)
T PF10137_consen   79 QNVIFELGLFIG   90 (125)
T ss_pred             cceeehhhHHHh
Confidence            557789988876

Their exact function has not, as yet, been defined.

>COG4916 Uncharacterized protein containing a TIR (Toll-Interleukin 1-resistance) domain [Function unknown]

Probab=95.87  E-value=0.0095  Score=44.89  Aligned_cols=95  Identities=15%  Similarity=0.083  Sum_probs=65.5

Q ss_pred             CCCCCeeeEEEEeeeccCccchHHHHHHHHccC--CcceEEeCC----CCCCccchHHHHHHH-HhcCeEEEEecCCccC
Q 041158            8 PRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHN--NIETFIDND----LKRGDEISQSLLDTI-EASTISIIIFSERYAS   80 (118)
Q Consensus         8 ~~~~~~~dVFISys~~D~~~~fv~~L~~~L~~~--Gi~v~~d~~----~~~G~~~~~~i~~~i-~~s~~~I~v~S~~~~~   80 (118)
                      .+..+.||+=+||.++-  .++|+....+++..  -...|+|-.    +-+|. +.+-+...- ..|++.+|.+..+|..
T Consensus       172 d~~~~~~DiG~SFaGEA--R~LVEqV~~E~~~~~~p~~~FYD~~~~~~L~~~s-L~~~L~~~Y~~rC~~~~VF~~~~Y~~  248 (329)
T COG4916         172 DSSEKPVDSGISFAGEA--RNLVEQVQTEHSGLDIPTRRFYDLLVAHPLYPGS-LVSTLDPGYDIRCVVTTVFNTGSYIC  248 (329)
T ss_pred             cccccccceeeEeehhh--hhHHHHHHHhhhcccCCceeeeechhhccccCcc-HHHhcccccCceEEEEEEEeCCceEE
Confidence            46778999999998874  47999999999843  356677753    33333 322222222 2689999999999999


Q ss_pred             chhhHHHHHHHHHhhhhCCCEEEEEEe
Q 041158           81 SGWCLDELLKILECKHVYGQIVIPVFC  107 (118)
Q Consensus        81 S~wc~~El~~~~~~~~~~~~~iiPI~~  107 (118)
                      ..||.-|...+....  .-..+.||.|
T Consensus       249 K~~c~~E~~~~r~~~--~~d~~~rI~~  273 (329)
T COG4916         249 KSTCHIEGLEGRLNP--ILDTGFRIKY  273 (329)
T ss_pred             eeeeccchhhccccc--cccccceEEE
Confidence            999999987654321  2234666655

>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2

Probab=95.68  E-value=0.16  Score=32.85  Aligned_cols=77  Identities=22%  Similarity=0.129  Sum_probs=53.7

Q ss_pred             cchHHHHHHHHccCCcceEEeCC--CC---CCcc----chHHHHHHHHhcCeEEEEecCCccCchhhHHHHHHHHHhhhh
Q 041158           27 DNFTSHLYSALCHNNIETFIDND--LK---RGDE----ISQSLLDTIEASTISIIIFSERYASSGWCLDELLKILECKHV   97 (118)
Q Consensus        27 ~~fv~~L~~~L~~~Gi~v~~d~~--~~---~G~~----~~~~i~~~i~~s~~~I~v~S~~~~~S~wc~~El~~~~~~~~~   97 (118)
                      ..+..++.+.|+++|+.++...+  ..   .+..    +.+.-.++|++|+++|+++.+.- .+.-+..|+..|...   
T Consensus        13 ~~~~~~~~~~L~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~d~~~i~~~D~via~l~~~~-~d~Gt~~ElG~A~al---   88 (113)
T PF05014_consen   13 KARVERLREALEKNGFEVYSPQDNDENDEEDSQEWAREIFERDLEGIRECDIVIANLDGFR-PDSGTAFELGYAYAL---   88 (113)
T ss_dssp             HHHHHHHHHHHHTTTTEEEGGCTCSSS--TTSHHCHHHHHHHHHHHHHHSSEEEEEECSSS---HHHHHHHHHHHHT---
T ss_pred             HHHHHHHHHHHHhCCCEEEeccccccccccccchHHHHHHHHHHHHHHHCCEEEEECCCCC-CCCcHHHHHHHHHHC---
Confidence            46889999999999999886543  21   1222    33444569999999999998755 677888999998763   


Q ss_pred             CCCEEEEEEee
Q 041158           98 YGQIVIPVFCR  108 (118)
Q Consensus        98 ~~~~iiPI~~~  108 (118)
                       +.+|+-+.-+
T Consensus        89 -gkpv~~~~~d   98 (113)
T PF05014_consen   89 -GKPVILLTED   98 (113)
T ss_dssp             -TSEEEEEECC
T ss_pred             -CCEEEEEEcC
Confidence             3455544433

4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....

>PF13271 DUF4062: Domain of unknown function (DUF4062)

Probab=95.55  E-value=0.05  Score=33.67  Aligned_cols=64  Identities=20%  Similarity=0.226  Sum_probs=46.8

Q ss_pred             EEEEeeeccCccchHHHHHHHHccCCcceEEeCCC-CCCccchHHHHHHHHhcCeEEEEecCCccC
Q 041158           16 IFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDL-KRGDEISQSLLDTIEASTISIIIFSERYAS   80 (118)
Q Consensus        16 VFISys~~D~~~~fv~~L~~~L~~~Gi~v~~d~~~-~~G~~~~~~i~~~i~~s~~~I~v~S~~~~~   80 (118)
                      ||||=.-.|-. .--..|.+.+.+.|..+..-+.+ ..+..-.+.+.+.|++|+++|.++...|=.
T Consensus         2 VFiSSt~~Dl~-~eR~~l~~~i~~~~~~~~~~e~~~a~~~~~~~~cl~~v~~cDifI~ilG~rYG~   66 (83)
T PF13271_consen    2 VFISSTFRDLK-EERDALIEAIRRLGCEPVGMEFFPASDQSPLEICLKEVDECDIFILILGNRYGS   66 (83)
T ss_pred             EEEecChhhHH-HHHHHHHHHHHHCCCeeeeeeeecCCCCCHHHHHHHHHhhCCEEEEeeccccCC
Confidence            89987666642 34467778888778766543333 335566678999999999999999999854

>COG4271 Predicted nucleotide-binding protein containing TIR -like domain [Transcription]

Probab=95.03  E-value=0.22  Score=36.27  Aligned_cols=83  Identities=16%  Similarity=0.139  Sum_probs=61.7

Q ss_pred             CCCCCCCeeeEEEEeeeccCccchHHHHHHHHc-cCC-cceEEeCCCCCCccchHHHHHHHHhcCeEEEEecCCcc----
Q 041158            6 SSPRNSNKHGIFLSFRGEDTRDNFTSHLYSALC-HNN-IETFIDNDLKRGDEISQSLLDTIEASTISIIIFSERYA----   79 (118)
Q Consensus         6 ~~~~~~~~~dVFISys~~D~~~~fv~~L~~~L~-~~G-i~v~~d~~~~~G~~~~~~i~~~i~~s~~~I~v~S~~~~----   79 (118)
                      ++++..+  -|||-|++.    +.|.....+|. +.. ..+|.|.-+..|..+.+.+++-|...+..|++.+|+=.    
T Consensus        77 ~t~p~~k--kvFvv~ghd----~iArael~allrd~~l~~vi~d~~~~~g~~ile~lek~i~~v~FAi~latPDDkgy~~  150 (233)
T COG4271          77 ATMPNLK--KVFVVSGHD----AIARAELEALLRDWKLEPVILDGLFSEGQTILESLEKYIAEVKFAIVLATPDDKGYRA  150 (233)
T ss_pred             cccCCce--eEEEEeccH----HHHHHHHHHHhhccccceEEecCcccccHHHHHHHHHHhhhceEEEEEecCccccccc
Confidence            3555544  999999654    36766666665 433 56777776899999999999999999999999999844    


Q ss_pred             ----------CchhhHHHHHHHHHh
Q 041158           80 ----------SSGWCLDELLKILEC   94 (118)
Q Consensus        80 ----------~S~wc~~El~~~~~~   94 (118)
                                .-..+..||..++.+
T Consensus       151 ~~~~~k~~praRqNVifELGm~mgr  175 (233)
T COG4271         151 VHSREKAFPRARQNVIFELGMFMGR  175 (233)
T ss_pred             ccchhhccccccccchhhHhhHHhh
Confidence                      133467788887763

>PF14359 DUF4406: Domain of unknown function (DUF4406)

Probab=92.14  E-value=1.4  Score=27.90  Aligned_cols=63  Identities=11%  Similarity=-0.038  Sum_probs=42.4

Q ss_pred             hHHHHHHHHccCCcceEEeCCC--CCCccchH---HHHHHHHhcCeEEEEecCCccCchhhHHHHHHHHH
Q 041158           29 FTSHLYSALCHNNIETFIDNDL--KRGDEISQ---SLLDTIEASTISIIIFSERYASSGWCLDELLKILE   93 (118)
Q Consensus        29 fv~~L~~~L~~~Gi~v~~d~~~--~~G~~~~~---~i~~~i~~s~~~I~v~S~~~~~S~wc~~El~~~~~   93 (118)
                      -.....+.|+..|..|.---.+  ..|..+.+   .-...|..|+.+++  =|++..|.-|+-|...|.+
T Consensus        17 ~f~~~a~~L~~~G~~vvnPa~~~~~~~~~~~~ym~~~l~~L~~cD~i~~--l~gWe~S~GA~~E~~~A~~   84 (92)
T PF14359_consen   17 AFNAAAKRLRAKGYEVVNPAELGIPEGLSWEEYMRICLAMLSDCDAIYM--LPGWENSRGARLEHELAKK   84 (92)
T ss_pred             HHHHHHHHHHHCCCEEeCchhhCCCCCCCHHHHHHHHHHHHHhCCEEEE--cCCcccCcchHHHHHHHHH
Confidence            3456788899999766532223  45554443   33345667886544  4999999999999988765

>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain

Probab=90.48  E-value=1.5  Score=26.46  Aligned_cols=61  Identities=7%  Similarity=0.155  Sum_probs=39.6

Q ss_pred             eeEEEEeeeccCccchHHHHHHHHccCCcceEEeCCCCCCccchHHHHHHHHhcCeEEEEecCCc
Q 041158           14 HGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSERY   78 (118)
Q Consensus        14 ~dVFISys~~D~~~~fv~~L~~~L~~~Gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~I~v~S~~~   78 (118)
                      ++|+|...+.+. ...+..+...|++.|++|-+|..   +..+..++..|-..---.++++.++.
T Consensus         2 ~~v~ii~~~~~~-~~~a~~~~~~Lr~~g~~v~~d~~---~~~~~~~~~~a~~~g~~~~iiig~~e   62 (91)
T cd00860           2 VQVVVIPVTDEH-LDYAKEVAKKLSDAGIRVEVDLR---NEKLGKKIREAQLQKIPYILVVGDKE   62 (91)
T ss_pred             eEEEEEeeCchH-HHHHHHHHHHHHHCCCEEEEECC---CCCHHHHHHHHHHcCCCEEEEECcch
Confidence            687777655433 45788899999999999988753   23455556555444334555555543

ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.

>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS)

Probab=88.34  E-value=2  Score=26.03  Aligned_cols=62  Identities=13%  Similarity=0.168  Sum_probs=39.9

Q ss_pred             eeEEEEeeecc--CccchHHHHHHHHccCCcceEEeCCCCCCccchHHHHHHHHhcCeEEEEecCCc
Q 041158           14 HGIFLSFRGED--TRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSERY   78 (118)
Q Consensus        14 ~dVFISys~~D--~~~~fv~~L~~~L~~~Gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~I~v~S~~~   78 (118)
                      ++|+|-..+.+  .....+..+...|++.|+++.+|..   +..+..++..+-..---+++++.++-
T Consensus         2 ~~v~ii~~~~~~~~~~~~a~~~~~~Lr~~g~~v~~~~~---~~~~~k~~~~a~~~g~~~~iiig~~e   65 (94)
T cd00738           2 IDVAIVPLTDPRVEAREYAQKLLNALLANGIRVLYDDR---ERKIGKKFREADLRGVPFAVVVGEDE   65 (94)
T ss_pred             eEEEEEECCCCcHHHHHHHHHHHHHHHHCCCEEEecCC---CcCHhHHHHHHHhCCCCEEEEECCCh
Confidence            57777654330  1246788899999999999988653   34555555555444445677777643

In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).

>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis

Probab=86.56  E-value=1.5  Score=26.93  Aligned_cols=48  Identities=17%  Similarity=0.234  Sum_probs=31.9

Q ss_pred             cchHHHHHHHHccCCcceEEeCCCCCCccchHHHHHHHHhcCeEEEEecCC
Q 041158           27 DNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSER   77 (118)
Q Consensus        27 ~~fv~~L~~~L~~~Gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~I~v~S~~   77 (118)
                      ..++.+|...|.+.|+++.+|..   +..+...+..|-..---+++++.++
T Consensus        15 ~~~a~~l~~~L~~~gi~v~~d~~---~~~~~k~~~~a~~~g~p~~iiiG~~   62 (94)
T PF03129_consen   15 IEYAQELANKLRKAGIRVELDDS---DKSLGKQIKYADKLGIPFIIIIGEK   62 (94)
T ss_dssp             HHHHHHHHHHHHHTTSEEEEESS---SSTHHHHHHHHHHTTESEEEEEEHH
T ss_pred             HHHHHHHHHHHHHCCCEEEEECC---CCchhHHHHHHhhcCCeEEEEECch
Confidence            46889999999999999999864   3334445555554333345555543

This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....

>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain

Probab=86.04  E-value=3.7  Score=26.82  Aligned_cols=67  Identities=9%  Similarity=-0.055  Sum_probs=44.6

Q ss_pred             CCCCeeeEEEEeeec-cCccchHHHHHHHHccCCcceEEeCCCCCCccchHHHHHHHHhcCeEEEEecCCcc
Q 041158            9 RNSNKHGIFLSFRGE-DTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSERYA   79 (118)
Q Consensus         9 ~~~~~~dVFISys~~-D~~~~fv~~L~~~L~~~Gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~I~v~S~~~~   79 (118)
                      .--..+||||-.-++ +.....+..|...|++.|++|-+|..    ..+..++..|-+.---+++++.++-.
T Consensus        22 ~~lap~~v~Ii~~~~~~~~~~~a~~la~~LR~~gi~v~~d~~----~sl~kqlk~A~k~g~~~~iiiG~~e~   89 (121)
T cd00858          22 PALAPIKVAVLPLVKRDELVEIAKEISEELRELGFSVKYDDS----GSIGRRYARQDEIGTPFCVTVDFDTL   89 (121)
T ss_pred             CCcCCcEEEEEecCCcHHHHHHHHHHHHHHHHCCCEEEEeCC----CCHHHHHHHhHhcCCCEEEEECcCch
Confidence            334568888877651 22245778899999999999988753    35666666665544456677776543

GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.

>PF14258 DUF4350: Domain of unknown function (DUF4350)

Probab=85.24  E-value=5.6  Score=23.26  Aligned_cols=61  Identities=16%  Similarity=0.181  Sum_probs=36.3

Q ss_pred             HHHHHHHccCCcceEEeCCCCCCccchHHHHHHHHhcCeEEEEecCCccCchhhHHHHHHHHHhhhhCCCEEE
Q 041158           31 SHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSERYASSGWCLDELLKILECKHVYGQIVI  103 (118)
Q Consensus        31 ~~L~~~L~~~Gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~I~v~S~~~~~S~wc~~El~~~~~~~~~~~~~ii  103 (118)
                      ..++..|++.|++|-....          ..+++......+++++|.+.-+.  ..++..+.+..++++..+|
T Consensus         8 ~a~~~~L~~~g~~v~~~~~----------~~~~l~~~~~tll~i~~~~~~~~--~~~~~~l~~~v~~G~~lvl   68 (70)
T PF14258_consen    8 YALYQLLEEQGVKVERWRK----------PYEALEADDGTLLVIGPDLRLSE--PEEAEALLEWVEAGNTLVL   68 (70)
T ss_pred             HHHHHHHHHCCCeeEEecc----------cHHHhCCCCCEEEEEeCCCCCCc--hHHHHHHHHHHHcCCEEEE
Confidence            3577788888988843221          12244557889999999966553  3444444444444444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	118
3jrn_A	176	Crystal Structure Of Tir Domain From Arabidopsis Th		9e-24
3ozi_A	204	Crystal Structure Of The Tir Domain From The Flax D		1e-18

>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana Length = 176

Iteration: 1
 Score =  105 bits (261), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 50/109 (45%), Positives = 70/109 (64%), Gaps = 1/109 (0%)
Query: 11  SNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDN-DLKRGDEISQSLLDTIEASTI 69
           + K+ +FLSFRG DTR NF S LY  L   +I TF D+ +L+ G   S  L   IE S  
Sbjct: 6   ATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRF 65
Query: 70  SIIIFSERYASSGWCLDELLKILECKHVYGQIVIPVFCRVDPSHVRWQT 118
           ++++ SE YA+S WCLDEL+ I++ +      V+P+F  V+P+HVRWQT
Sbjct: 66  AVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQT 114

>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease Resistance Protein L6 Length = 204

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/110 (46%), Positives = 68/110 (61%), Gaps = 2/110 (1%)
Query: 11  SNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDND-LKRGDEISQSLLDTIEASTI 69
           S ++ +FLSFRG DTR+ FT  LY +L    I TF D+D L +G EI  +LL  I+ S I
Sbjct: 33  SVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKI 92
Query: 70  SIIIFSERYASSGWCLDELLKILECKHVYG-QIVIPVFCRVDPSHVRWQT 118
            + I S  YA S WCL EL +I+  +     +I++P+F  VDPS VR QT
Sbjct: 93  YVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQT 142

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	118
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	1e-64
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	3e-63
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	7e-60
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	1e-12
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	6e-05

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana} Length = 176

 Score =  192 bits (491), Expect = 1e-64
 Identities = 52/119 (43%), Positives = 74/119 (62%), Gaps = 6/119 (5%)

Query: 1   MASSSSSPRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDND-LKRGDEISQS 59
           M+S +++     K+ +FLSFRG DTR NF S LY  L   +I TF D+  L+ G   S  
Sbjct: 1   MSSHTAT-----KYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPE 55

Query: 60  LLDTIEASTISIIIFSERYASSGWCLDELLKILECKHVYGQIVIPVFCRVDPSHVRWQT 118
           L   IE S  ++++ SE YA+S WCLDEL+ I++ +      V+P+F  V+P+HVRWQT
Sbjct: 56  LKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQT 114

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum} Length = 204

 Score =  190 bits (484), Expect = 3e-63
 Identities = 52/119 (43%), Positives = 72/119 (60%), Gaps = 2/119 (1%)

Query: 2   ASSSSSPRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDND-LKRGDEISQSL 60
           +++ S    S ++ +FLSFRG DTR+ FT  LY +L    I TF D+D L +G EI  +L
Sbjct: 24  STNPSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNL 83

Query: 61  LDTIEASTISIIIFSERYASSGWCLDELLKILECKHVYG-QIVIPVFCRVDPSHVRWQT 118
           L  I+ S I + I S  YA S WCL EL +I+  +     +I++P+F  VDPS VR QT
Sbjct: 84  LRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQT 142

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222} Length = 154

 Score =  179 bits (457), Expect = 7e-60
 Identities = 24/118 (20%), Positives = 53/118 (44%), Gaps = 2/118 (1%)

Query: 2   ASSSSSPRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDN-DLKRGDEISQSL 60
            ++++   ++  H IF+S   ED + +F   L   L     E + D+  L+ GD + +S+
Sbjct: 9   PTTNADLTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSI 67

Query: 61  LDTIEASTISIIIFSERYASSGWCLDELLKILECKHVYGQIVIPVFCRVDPSHVRWQT 118
              + +S   I++ S  +    W   EL  + + +      ++P++ +V    V   +
Sbjct: 68  DKGLGSSRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASFS 125

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A Length = 146

 Score = 59.3 bits (144), Expect = 1e-12
 Identities = 22/120 (18%), Positives = 42/120 (35%), Gaps = 9/120 (7%)

Query: 6   SSPRNSNKHGIFLSFRGEDTRDNFTSHLYSAL--CHNNIETFIDN-DLKRGDEISQSLLD 62
            S R S  + + +    ED        L S L     ++  F+   D   G  I   L  
Sbjct: 3   GSSRWSKDYDVCVCHSEEDLV--AAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQ 60

Query: 63  TIEASTISIIIFSERYASSGWCLDELLKILECKHVYGQIVIPVFCRVD----PSHVRWQT 118
            + +S   +++ +  +    WC  ++L+ L          IP+   +     P  +R+  
Sbjct: 61  ALSSSHCRVLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMY 120

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A Length = 178

 Score = 39.5 bits (92), Expect = 6e-05
 Identities = 20/101 (19%), Positives = 37/101 (36%), Gaps = 5/101 (4%)

Query: 17  FLSFRGEDTRDNFTSHLYSAL--CHNNIETFI-DNDLKRGDEISQSLLDTIEASTISIII 73
           F+S+   D      + L   L     +I   + ++    G  IS++++  IE S  SI +
Sbjct: 39  FISYSEHD-SLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFV 97

Query: 74  FSERYASSGWCLDELLKILECKHVYGQI-VIPVFCRVDPSH 113
            S  +  + WC  E               +I +     P +
Sbjct: 98  LSPNFVQNEWCHYEFYFAHHNLFHENSDHIILILLEPIPFY 138

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	118
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	100.0
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	100.0
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	100.0
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	99.96
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	99.94
2js7_A	160	Myeloid differentiation primary response protein M	99.94
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	99.93
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	99.93
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.83
1eiw_A	111	Hypothetical protein MTH538; CHEY-like fold, flavo	98.58
3hyn_A	189	Putative signal transduction protein; DUF1863 fami	97.51
2f62_A	161	Nucleoside 2-deoxyribosyltransferase; SGPP, struct	96.32
2khz_A	165	C-MYC-responsive protein RCL; flexible loop, nucle	94.08
3ehd_A	162	Uncharacterized conserved protein; PSI,MCSG,PF0501	91.64
4fyk_A	152	Deoxyribonucleoside 5'-monophosphate N-glycosidas;	91.42
1s2d_A	167	Purine trans deoxyribosylase; ribosylate intermedi	89.37
1f8y_A	157	Nucleoside 2-deoxyribosyltransferase; active site,	82.05

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}

Probab=100.00  E-value=7.2e-40  Score=234.86  Aligned_cols=112  Identities=46%  Similarity=0.721  Sum_probs=103.1

Q ss_pred             CCCCCCeeeEEEEeeeccCccchHHHHHHHHccCCcceEEeCC-CCCCccchHHHHHHHHhcCeEEEEecCCccCchhhH
Q 041158            7 SPRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDND-LKRGDEISQSLLDTIEASTISIIIFSERYASSGWCL   85 (118)
Q Consensus         7 ~~~~~~~~dVFISys~~D~~~~fv~~L~~~L~~~Gi~v~~d~~-~~~G~~~~~~i~~~i~~s~~~I~v~S~~~~~S~wc~   85 (118)
                      +..+.++|||||||+++|+++.|+.+|+++|+++|+++|+|++ +++|+.+.++|.+||++|+++|+|+|++|+.|.||+
T Consensus        29 ~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl  108 (204)
T 3ozi_A           29 GSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCL  108 (204)
T ss_dssp             -----CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHH
T ss_pred             CCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHH
Confidence            5567899999999999999889999999999999999999987 999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhh-CCCEEEEEEeecCCCCcccCC
Q 041158           86 DELLKILECKHV-YGQIVIPVFCRVDPSHVRWQT  118 (118)
Q Consensus        86 ~El~~~~~~~~~-~~~~iiPI~~~v~p~~v~~q~  118 (118)
                      +||..|++|.++ ++++||||||+++|++||.|+
T Consensus       109 ~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~  142 (204)
T 3ozi_A          109 MELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQT  142 (204)
T ss_dssp             HHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTC
T ss_pred             HHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhcc
Confidence            999999999875 689999999999999999985

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}

Probab=100.00  E-value=6.2e-40  Score=231.07  Aligned_cols=109  Identities=46%  Similarity=0.846  Sum_probs=91.1

Q ss_pred             CCCeeeEEEEeeeccCccchHHHHHHHHccCCcceEEeCC-CCCCccchHHHHHHHHhcCeEEEEecCCccCchhhHHHH
Q 041158           10 NSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDND-LKRGDEISQSLLDTIEASTISIIIFSERYASSGWCLDEL   88 (118)
Q Consensus        10 ~~~~~dVFISys~~D~~~~fv~~L~~~L~~~Gi~v~~d~~-~~~G~~~~~~i~~~i~~s~~~I~v~S~~~~~S~wc~~El   88 (118)
                      +.+.|||||||+++|+++.|+.+|+++|+++|+++|+|++ +++|+.+.++|.+||++|+++|+|+|++|++|.||++||
T Consensus         5 ~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL   84 (176)
T 3jrn_A            5 TATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDEL   84 (176)
T ss_dssp             --CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHHH
T ss_pred             CCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHH
Confidence            5689999999999999889999999999999999999987 999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhCCCEEEEEEeecCCCCcccCC
Q 041158           89 LKILECKHVYGQIVIPVFCRVDPSHVRWQT  118 (118)
Q Consensus        89 ~~~~~~~~~~~~~iiPI~~~v~p~~v~~q~  118 (118)
                      ..++++.++++++||||||+++|++|+.|+
T Consensus        85 ~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~  114 (176)
T 3jrn_A           85 VTIMDFEKKGSITVMPIFYGVEPNHVRWQT  114 (176)
T ss_dssp             HHHHHHHHTTSCEEEEEECSSCHHHHHHTC
T ss_pred             HHHHhhhccCCCEEEEEEecCCHHHhhhcc
Confidence            999999988999999999999999999985

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}

Probab=100.00  E-value=1.2e-35  Score=204.83  Aligned_cols=110  Identities=22%  Similarity=0.383  Sum_probs=101.5

Q ss_pred             CCCCCeeeEEEEeeeccCccchHHHHHHHHccCCcceEEeCC-CCCCccchHHHHHHHHhcCeEEEEecCCccCchhhHH
Q 041158            8 PRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDND-LKRGDEISQSLLDTIEASTISIIIFSERYASSGWCLD   86 (118)
Q Consensus         8 ~~~~~~~dVFISys~~D~~~~fv~~L~~~L~~~Gi~v~~d~~-~~~G~~~~~~i~~~i~~s~~~I~v~S~~~~~S~wc~~   86 (118)
                      ..+.++|||||||+++| +..|+.+|+.+|+++|+++|+|.+ +.+|+.|.++|.++|++|+++|+|+||+|++|.||+.
T Consensus        15 ~~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~   93 (154)
T 3h16_A           15 LTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQK   93 (154)
T ss_dssp             ---CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHH
T ss_pred             cCCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHH
Confidence            35678999999999999 457999999999999999999998 9999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhCCCEEEEEEeecCCCCcccCC
Q 041158           87 ELLKILECKHVYGQIVIPVFCRVDPSHVRWQT  118 (118)
Q Consensus        87 El~~~~~~~~~~~~~iiPI~~~v~p~~v~~q~  118 (118)
                      |+..++++..+++.+||||||+++|++|++|+
T Consensus        94 El~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~  125 (154)
T 3h16_A           94 ELDGLFQLESSGRSRILPIWHKVSKDEVASFS  125 (154)
T ss_dssp             HHHHHTCCCTTSCCCEEEEEESCCTGGGTTTC
T ss_pred             HHHHHHHHHhcCCCEEEEEEecCCHHHHhhCC
Confidence            99999987777788999999999999999874

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A

Probab=99.96  E-value=3.2e-30  Score=176.77  Aligned_cols=107  Identities=18%  Similarity=0.281  Sum_probs=81.5

Q ss_pred             CCCCCCeeeEEEEeeeccCccchHHHHHHHHcc--CCcceEEeCC-CCCCccchHHHHHHHHhcCeEEEEecCCccCchh
Q 041158            7 SPRNSNKHGIFLSFRGEDTRDNFTSHLYSALCH--NNIETFIDND-LKRGDEISQSLLDTIEASTISIIIFSERYASSGW   83 (118)
Q Consensus         7 ~~~~~~~~dVFISys~~D~~~~fv~~L~~~L~~--~Gi~v~~d~~-~~~G~~~~~~i~~~i~~s~~~I~v~S~~~~~S~w   83 (118)
                      |+..++.|||||||+++|.  .||.+|..+|++  .|+++|++++ +.+|+.+.++|.++|++|+++|+|+||+|++|.|
T Consensus         4 ~~r~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~w   81 (146)
T 3ub2_A            4 SSRWSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPW   81 (146)
T ss_dssp             CCTTSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHH
T ss_pred             CCCCCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHH
Confidence            4667889999999999996  589999999998  5999999887 9999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhhhhCCCEEEEEEeecCCCCcc
Q 041158           84 CLDELLKILECKHVYGQIVIPVFCRVDPSHVR  115 (118)
Q Consensus        84 c~~El~~~~~~~~~~~~~iiPI~~~v~p~~v~  115 (118)
                      |..|+..|+.+......++|||+++++++++.
T Consensus        82 c~~El~~al~~~~~~~~~vIpv~~~v~~~~lp  113 (146)
T 3ub2_A           82 CKYQMLQALTEAPGAEGCTIPLLSGLSRAAYP  113 (146)
T ss_dssp             HHHHHHHHHHTSSSSSSEEEEEECSCCGGGSC
T ss_pred             HHHHHHHHHHHHhhcCCcEEEEEcCCChhhCC
Confidence            99999999987633344788999988866654

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A

Probab=99.94  E-value=1.8e-28  Score=168.37  Aligned_cols=103  Identities=17%  Similarity=0.266  Sum_probs=91.1

Q ss_pred             CCCeeeEEEEeeeccCccchHHH-HHHHHccC--CcceEEeCC-CCCCccchHHHHHHHHhcCeEEEEecCCccCchhhH
Q 041158           10 NSNKHGIFLSFRGEDTRDNFTSH-LYSALCHN--NIETFIDND-LKRGDEISQSLLDTIEASTISIIIFSERYASSGWCL   85 (118)
Q Consensus        10 ~~~~~dVFISys~~D~~~~fv~~-L~~~L~~~--Gi~v~~d~~-~~~G~~~~~~i~~~i~~s~~~I~v~S~~~~~S~wc~   85 (118)
                      +++.|||||||+++|.  .||.+ |...|++.  |+++|+|++ +.+|+.+.++|.++|++|+++|+|+||+|++|.||+
T Consensus         2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~   79 (149)
T 1fyx_A            2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK   79 (149)
T ss_dssp             CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred             CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence            4679999999999996  79986 99999986  999999987 999999999999999999999999999999999999


Q ss_pred             HHHHHHHH-hhhhCCCEEEEEEee-cCCCCc
Q 041158           86 DELLKILE-CKHVYGQIVIPVFCR-VDPSHV  114 (118)
Q Consensus        86 ~El~~~~~-~~~~~~~~iiPI~~~-v~p~~v  114 (118)
                      .|+..|+. +.++++.+||||+|+ +.+.++
T Consensus        80 ~El~~a~~~~~~~~~~~vIpv~~~~i~~~~~  110 (149)
T 1fyx_A           80 YELDFSHFRLFDENNDAAILILLEPIEKKAI  110 (149)
T ss_dssp             HHSCCSCCTTCGGGTTCCEEEESSCCCTTTS
T ss_pred             HHHHHHHHHHHhcCCCEEEEEEecCCChhhc
Confidence            99999875 334567789999995 555444

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A

Probab=99.94  E-value=5.7e-28  Score=167.73  Aligned_cols=102  Identities=14%  Similarity=0.204  Sum_probs=90.3

Q ss_pred             CCCCCeeeEEEEeeeccCccchHHHHHHHHccC--CcceEEeCC-CCCCccchHHHHHHHH-hcCeEEEEecCCccCchh
Q 041158            8 PRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHN--NIETFIDND-LKRGDEISQSLLDTIE-ASTISIIIFSERYASSGW   83 (118)
Q Consensus         8 ~~~~~~~dVFISys~~D~~~~fv~~L~~~L~~~--Gi~v~~d~~-~~~G~~~~~~i~~~i~-~s~~~I~v~S~~~~~S~w   83 (118)
                      ...++.|||||||+++|.  .||.+|..+|++.  |+++|+|++ +.+|+.+.++|.++|+ +|+.+|+|+||+|++|.|
T Consensus        11 ~~~~~~yDvFISys~~D~--~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~w   88 (160)
T 2js7_A           11 GHMPERFDAFICYCPSDI--QFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKE   88 (160)
T ss_dssp             SCCTTCEEEEEECCGGGH--HHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHH
T ss_pred             CCCCcceEEEEEcccccH--HHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHH
Confidence            445689999999999994  7999999999984  699999887 9999999999999999 799999999999999999


Q ss_pred             hHHHHHHHHHhh-hhCCCEEEEEEeecCC
Q 041158           84 CLDELLKILECK-HVYGQIVIPVFCRVDP  111 (118)
Q Consensus        84 c~~El~~~~~~~-~~~~~~iiPI~~~v~p  111 (118)
                      |..|+..|+.+. .+++.+||||+|+..+
T Consensus        89 c~~El~~a~~~~~~~~~~~vIpV~~~~~~  117 (160)
T 2js7_A           89 CDFQTKFALSLSPGAHQKRLIPIKYKAMK  117 (160)
T ss_dssp             HHHHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred             HHHHHHHHHHHHHccCCCEEEEEEEcccc
Confidence            999999999864 3345689999997654

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A

Probab=99.93  E-value=1.7e-27  Score=168.00  Aligned_cols=104  Identities=19%  Similarity=0.324  Sum_probs=87.6

Q ss_pred             CCCCCeeeEEEEeeeccCccchHHH-HHHHHcc--CCcceEEeCC-CCCCccchHHHHHHHHhcCeEEEEecCCccCchh
Q 041158            8 PRNSNKHGIFLSFRGEDTRDNFTSH-LYSALCH--NNIETFIDND-LKRGDEISQSLLDTIEASTISIIIFSERYASSGW   83 (118)
Q Consensus         8 ~~~~~~~dVFISys~~D~~~~fv~~-L~~~L~~--~Gi~v~~d~~-~~~G~~~~~~i~~~i~~s~~~I~v~S~~~~~S~w   83 (118)
                      ...++.|||||||+++|.  .||.+ |...|++  .|+++|+|++ +.+|+.+.++|.++|++|+.+|+|+||+|++|+|
T Consensus        30 ~~~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~w  107 (178)
T 2j67_A           30 LKRNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEW  107 (178)
T ss_dssp             CCCSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTG
T ss_pred             cCCCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccch
Confidence            456789999999999995  79975 9999998  8999999887 9999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhh-hhCCCEEEEEEee-cCCCC
Q 041158           84 CLDELLKILECK-HVYGQIVIPVFCR-VDPSH  113 (118)
Q Consensus        84 c~~El~~~~~~~-~~~~~~iiPI~~~-v~p~~  113 (118)
                      |..|+..|+.+. ++++.+||||+|+ +.+.+
T Consensus       108 c~~El~~a~~~~~~~~~~~vIpV~~~~i~~~~  139 (178)
T 2j67_A          108 CHYEFYFAHHNLFHENSDHIILILLEPIPFYC  139 (178)
T ss_dssp             GGTHHHHTTCC-------CEEEEESSCCCGGG
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEEEecCCChHH
Confidence            999999998643 4567789999996 44333

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}

Probab=99.93  E-value=8.3e-27  Score=161.69  Aligned_cols=100  Identities=21%  Similarity=0.304  Sum_probs=87.9

Q ss_pred             CeeeEEEEeeeccC---------ccchHHHHHH-HHc-cCCcceEEeCC-CCCCccchHHHHHHHHhcCeEEEEecCCcc
Q 041158           12 NKHGIFLSFRGEDT---------RDNFTSHLYS-ALC-HNNIETFIDND-LKRGDEISQSLLDTIEASTISIIIFSERYA   79 (118)
Q Consensus        12 ~~~dVFISys~~D~---------~~~fv~~L~~-~L~-~~Gi~v~~d~~-~~~G~~~~~~i~~~i~~s~~~I~v~S~~~~   79 (118)
                      +.|||||||+++|.         ++.||.+|.. .|+ +.|+++|+|++ +.+|+.+.++|.++|++|+.+|+|+||+|+
T Consensus         1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~   80 (159)
T 1t3g_A            1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV   80 (159)
T ss_dssp             CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred             CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence            57999999999996         2468888565 699 79999999887 999999999999999999999999999997


Q ss_pred             -CchhhHHHHHHHHHhh-hhCCCEEEEEEeecCC
Q 041158           80 -SSGWCLDELLKILECK-HVYGQIVIPVFCRVDP  111 (118)
Q Consensus        80 -~S~wc~~El~~~~~~~-~~~~~~iiPI~~~v~p  111 (118)
                       .|.||..|+..|+.+. .+++.+||||+++..+
T Consensus        81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~  114 (159)
T 1t3g_A           81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELR  114 (159)
T ss_dssp             HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCC
T ss_pred             hcChHHHHHHHHHHHHHHhcCCCEEEEEEecccc
Confidence             9999999999999865 5578899999986544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.83  E-value=2.8e-21  Score=160.34  Aligned_cols=101  Identities=18%  Similarity=0.279  Sum_probs=90.0

Q ss_pred             CCCCeeeEEEEeeeccCccchH-HHHHHHHcc-----CCcceEEeCC-CCCCccchHHHHHHHHhcCeEEEEecCCccCc
Q 041158            9 RNSNKHGIFLSFRGEDTRDNFT-SHLYSALCH-----NNIETFIDND-LKRGDEISQSLLDTIEASTISIIIFSERYASS   81 (118)
Q Consensus         9 ~~~~~~dVFISys~~D~~~~fv-~~L~~~L~~-----~Gi~v~~d~~-~~~G~~~~~~i~~~i~~s~~~I~v~S~~~~~S   81 (118)
                      ...+.|||||||+++|.  .|| ..|...|+.     .|+++|++++ +.||+.+.++|.++|++||.+|+|+|++|+.|
T Consensus       666 ~~~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s  743 (844)
T 3j0a_A          666 PDMYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRD  743 (844)
T ss_dssp             SSCCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHH
T ss_pred             ccceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccC
Confidence            35789999999999996  688 679999984     5899999988 99999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHhh-hhCCCEEEEEEeecCC
Q 041158           82 GWCLDELLKILECK-HVYGQIVIPVFCRVDP  111 (118)
Q Consensus        82 ~wc~~El~~~~~~~-~~~~~~iiPI~~~v~p  111 (118)
                      +||..|+..|..+. ++++.+||||+|+.-|
T Consensus       744 ~wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~  774 (844)
T 3j0a_A          744 GWCLEAFSYAQGRCLSDLNSALIMVVVGSLS  774 (844)
T ss_dssp             TSTTHHHHHHHSCCCCSSCTTEEEEESSCCC
T ss_pred             hHHHHHHHHHHHHHHHhcCCcEEEEEeccCC
Confidence            99999999988654 4577899999996544

>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1

Probab=98.58  E-value=4.4e-08  Score=63.82  Aligned_cols=73  Identities=11%  Similarity=-0.008  Sum_probs=55.6

Q ss_pred             CeeeEEEEeeeccCccchHHHHHHHHccCCcceEEeCCCCCCccchHHHHHHHHhcCeEEEEecCCccCchhhHHHHHHH
Q 041158           12 NKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSERYASSGWCLDELLKI   91 (118)
Q Consensus        12 ~~~dVFISys~~D~~~~fv~~L~~~L~~~Gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~I~v~S~~~~~S~wc~~El~~~   91 (118)
                      .+|.+||||+.+|    -.+.|...|.+.|+.. .|              +.|+.|.++|++.++....++||..|+..|
T Consensus         3 ~~~~lFISh~~~d----~~~~L~~~l~~~~f~~-~~--------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A   63 (111)
T 1eiw_A            3 AEIRLYITEGEVE----DYRVFLERLEQSGLEW-RP--------------ATPEDADAVIVLAGLWGTRRDEILGAVDLA   63 (111)
T ss_dssp             CCEEEEECCCCSH----HHHHHHHHHHHHCSCE-EE--------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHHH
T ss_pred             ceEEEEEecccHh----HHHHHHHHHhCCCCee-ec--------------CccccCCEEEEEeCCCcCCChHHHHHHHHH
Confidence            5789999999887    2455666664445433 22              678999999999999999999999998876


Q ss_pred             HHhhhhCCCEEEEEEe
Q 041158           92 LECKHVYGQIVIPVFC  107 (118)
Q Consensus        92 ~~~~~~~~~~iiPI~~  107 (118)
                      .+    .+.+||-|.-
T Consensus        64 ~~----~gkpIigV~~   75 (111)
T 1eiw_A           64 RK----SSKPIITVRP   75 (111)
T ss_dssp             TT----TTCCEEEECC
T ss_pred             HH----cCCCEEEEEc
Confidence            54    5667777764

>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}

Probab=97.51  E-value=0.00031  Score=49.20  Aligned_cols=91  Identities=18%  Similarity=0.144  Sum_probs=66.0

Q ss_pred             eeeEEEEe--------------eeccCccchHHHHHHHHccCCcceEEeCC-C----C---C-CccchHHHHHHHHhcCe
Q 041158           13 KHGIFLSF--------------RGEDTRDNFTSHLYSALCHNNIETFIDND-L----K---R-GDEISQSLLDTIEASTI   69 (118)
Q Consensus        13 ~~dVFISy--------------s~~D~~~~fv~~L~~~L~~~Gi~v~~d~~-~----~---~-G~~~~~~i~~~i~~s~~   69 (118)
                      .--+||+|              ..+|  -.+...|+.--.....--|.|.. .    .   . -..|...+.+.|..|+.
T Consensus         5 rn~~YvaF~~~~~~~~~~~~~~a~~D--i~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~   82 (189)
T 3hyn_A            5 QNANYSAFYVSEPFSESNLGANSTHD--FVYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKN   82 (189)
T ss_dssp             CCEEEEECCCCSSCCTTSTTGGGSTT--HHHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEE
T ss_pred             ccCcEEEEeccCcccccccCCCccch--HHHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCc
Confidence            44578888              3344  24556666666555554556643 3    1   2 23477899999999999


Q ss_pred             EEEEecCCccCchhhHHHHHHHHHhhhhCCCEEEEEEee
Q 041158           70 SIIIFSERYASSGWCLDELLKILECKHVYGQIVIPVFCR  108 (118)
Q Consensus        70 ~I~v~S~~~~~S~wc~~El~~~~~~~~~~~~~iiPI~~~  108 (118)
                      +|+++|++...|.|...|+..|++   +.+.+||-|..+
T Consensus        83 vIllIs~~T~~s~~v~wEIe~Ai~---~~~~PII~Vy~~  118 (189)
T 3hyn_A           83 IILFLSSITANSRALREEMNYGIG---TKGLPVIVIYPD  118 (189)
T ss_dssp             EEEECCTTCCCCHHHHHHHHHHTT---TTCCCEEEEETT
T ss_pred             EEEEEecCccccchhHHHHHHHHH---hcCCcEEEEECC
Confidence            999999999999999999998873   256688888765

>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*

Probab=96.32  E-value=0.027  Score=38.36  Aligned_cols=75  Identities=15%  Similarity=0.113  Sum_probs=55.0

Q ss_pred             cchHHHHHHHHccCCcceEEeCC--CCCCccchHHHHHHHHhcCeEEEEecC--CccCchhhHHHHHHHHHhhhhCCCEE
Q 041158           27 DNFTSHLYSALCHNNIETFIDND--LKRGDEISQSLLDTIEASTISIIIFSE--RYASSGWCLDELLKILECKHVYGQIV  102 (118)
Q Consensus        27 ~~fv~~L~~~L~~~Gi~v~~d~~--~~~G~~~~~~i~~~i~~s~~~I~v~S~--~~~~S~wc~~El~~~~~~~~~~~~~i  102 (118)
                      ..+..++.+.|+++|+.+|.-.+  ...+..+.++=.++|++|+++|++++|  .-..++-+..|+..+...    +++|
T Consensus        26 ~~~~~~l~~~l~~~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~Al----gKPV  101 (161)
T 2f62_A           26 ASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAAL----NKMV  101 (161)
T ss_dssp             HHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHT----TCEE
T ss_pred             HHHHHHHHHHHHHCCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHC----CCEE
Confidence            47889999999999999887433  222233344447899999999999997  555667789999988763    4466


Q ss_pred             EEE
Q 041158          103 IPV  105 (118)
Q Consensus       103 iPI  105 (118)
                      |-+
T Consensus       102 i~l  104 (161)
T 2f62_A          102 LTF  104 (161)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            554

>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*

Probab=94.08  E-value=0.37  Score=32.52  Aligned_cols=88  Identities=13%  Similarity=0.164  Sum_probs=56.8

Q ss_pred             CCCeeeEEEEeeec-cCccc-hHHHHHHHHccCCcceEEeCCCC-----CCcc-------chHHHHHHHHhcCeEEEEec
Q 041158           10 NSNKHGIFLSFRGE-DTRDN-FTSHLYSALCHNNIETFIDNDLK-----RGDE-------ISQSLLDTIEASTISIIIFS   75 (118)
Q Consensus        10 ~~~~~dVFISys~~-D~~~~-fv~~L~~~L~~~Gi~v~~d~~~~-----~G~~-------~~~~i~~~i~~s~~~I~v~S   75 (118)
                      ..++..|||+=.-. +.... ....+.+.|+..| .|+.+....     .|..       +...-.+.|++|+++|++++
T Consensus         8 ~~~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~aD~vva~~~   86 (165)
T 2khz_A            8 EQAPCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQADVVVAEVT   86 (165)
T ss_dssp             SCCCCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHHCSEEEEECS
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHHhCCEEEEECC
Confidence            34456799985432 21112 5688999999999 776543221     1211       22233478999999999997


Q ss_pred             CCccCchhhHHHHHHHHHhhhhCCCEEEEE
Q 041158           76 ERYASSGWCLDELLKILECKHVYGQIVIPV  105 (118)
Q Consensus        76 ~~~~~S~wc~~El~~~~~~~~~~~~~iiPI  105 (118)
                         ..+.-+..|+..+..    .+.+|+-+
T Consensus        87 ---~~d~Gt~~EiGyA~a----lgKPVi~l  109 (165)
T 2khz_A           87 ---QPSLGVGYELGRAVA----LGKPILCL  109 (165)
T ss_dssp             ---SCCHHHHHHHHHHHH----TCSSEEEE
T ss_pred             ---CCCCCHHHHHHHHHH----CCCEEEEE
Confidence               568889999999876    34455544

>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}

Probab=91.64  E-value=1.2  Score=30.13  Aligned_cols=75  Identities=11%  Similarity=0.138  Sum_probs=51.9

Q ss_pred             cchHHHHHHHHccC--CcceEEeCC-C----CCCccc----hHHHHHHHHhcCeEEEEecCCccCchhhHHHHHHHHHhh
Q 041158           27 DNFTSHLYSALCHN--NIETFIDND-L----KRGDEI----SQSLLDTIEASTISIIIFSERYASSGWCLDELLKILECK   95 (118)
Q Consensus        27 ~~fv~~L~~~L~~~--Gi~v~~d~~-~----~~G~~~----~~~i~~~i~~s~~~I~v~S~~~~~S~wc~~El~~~~~~~   95 (118)
                      ..+..++.++|+.+  |+.+|.-.+ -    .++..+    .+.=.++|++|+++|.++. ....+..+..|+..|..  
T Consensus        19 ~~~~~~l~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~D~~~i~~aD~viA~ld-g~~~D~Gt~~EiG~A~a--   95 (162)
T 3ehd_A           19 LRYNAYLVEQIRQLDKTIDLYLPQENAAINDKSAYADSKMIALADTENVLASDLLVALLD-GPTIDAGVASEIGVAYA--   95 (162)
T ss_dssp             HHHHHHHHHHHHTTCTTEEEECGGGGSCCCCTTCCCCHHHHHHHHHHHHHTCSEEEEECC-SSSCCHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHhcCCCCEEECCCccccccccccchHHHHHHHHHHHHHHHCCEEEEECC-CCCCCCCHHHHHHHHHH--
Confidence            35778899999865  888886432 1    122233    3444558999999999994 44568899999999886  


Q ss_pred             hhCCCEEEEEE
Q 041158           96 HVYGQIVIPVF  106 (118)
Q Consensus        96 ~~~~~~iiPI~  106 (118)
                        .+.+|+.+.
T Consensus        96 --~gkPVi~~~  104 (162)
T 3ehd_A           96 --KGIPVVALY  104 (162)
T ss_dssp             --TTCCEEEEC
T ss_pred             --CCCEEEEEE
Confidence              344666654

>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*

Probab=91.42  E-value=1.2  Score=30.03  Aligned_cols=71  Identities=15%  Similarity=0.206  Sum_probs=48.4

Q ss_pred             chHHHHHHHHccCCcceEEe---CC-C-CCCc-------cchHHHHHHHHhcCeEEEEecCCccCchhhHHHHHHHHHhh
Q 041158           28 NFTSHLYSALCHNNIETFID---ND-L-KRGD-------EISQSLLDTIEASTISIIIFSERYASSGWCLDELLKILECK   95 (118)
Q Consensus        28 ~fv~~L~~~L~~~Gi~v~~d---~~-~-~~G~-------~~~~~i~~~i~~s~~~I~v~S~~~~~S~wc~~El~~~~~~~   95 (118)
                      .+..++.+.|++.| .|+-.   .. + ..|+       .+.+.-.++|++|+++|.+++   ..+.-+..|+..|... 
T Consensus        19 ~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~aD~vvA~l~---~~d~Gt~~EiG~A~al-   93 (152)
T 4fyk_A           19 ALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQADVVVAEVT---QPSLGVGYELGRAVAL-   93 (152)
T ss_dssp             HHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHHHCSEEEEECS---SCCHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHHHCCEEEEeCC---CCCCCHHHHHHHHHHc-
Confidence            57799999999999 67531   11 1 1222       244555678999999999988   6688899999998863 


Q ss_pred             hhCCCEEEEEE
Q 041158           96 HVYGQIVIPVF  106 (118)
Q Consensus        96 ~~~~~~iiPI~  106 (118)
                         +.+|+-++
T Consensus        94 ---gkPV~~l~  101 (152)
T 4fyk_A           94 ---GKPILCLF  101 (152)
T ss_dssp             ---TCCEEEEE
T ss_pred             ---CCeEEEEE
Confidence               34555443

>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*

Probab=89.37  E-value=2.3  Score=28.78  Aligned_cols=74  Identities=18%  Similarity=0.132  Sum_probs=51.2

Q ss_pred             cchHHHHHHHHccC--CcceEEeCC--C--------CCC--------ccchHHHHHHHHhcCeEEEEecCCccCchhhHH
Q 041158           27 DNFTSHLYSALCHN--NIETFIDND--L--------KRG--------DEISQSLLDTIEASTISIIIFSERYASSGWCLD   86 (118)
Q Consensus        27 ~~fv~~L~~~L~~~--Gi~v~~d~~--~--------~~G--------~~~~~~i~~~i~~s~~~I~v~S~~~~~S~wc~~   86 (118)
                      ..+..++.+.|+++  |+.+|.-.+  .        ..+        ..+.+.=.++|++|+++|.++... ..+.-+..
T Consensus        22 ~~~~~~~~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~vVA~ldg~-~~D~GTa~  100 (167)
T 1s2d_A           22 RERAAKAKELLAKNPSIAHVFFPFDDGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATCGVFLYDMD-QLDDGSAF  100 (167)
T ss_dssp             HHHHHHHHHHHTTCTTEEEEECTTC-CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHHHHCSEEEEEEESS-SCCHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcCEEECCccccccccccccccccccCChHHHHHHHHHHHHHHHhCCEEEEECCCC-CCCCCcee
Confidence            46888999999999  888886332  2        111        122334456899999999999863 34677889


Q ss_pred             HHHHHHHhhhhCCCEEEEE
Q 041158           87 ELLKILECKHVYGQIVIPV  105 (118)
Q Consensus        87 El~~~~~~~~~~~~~iiPI  105 (118)
                      |+..|...    +.+|+-+
T Consensus       101 EiGyA~al----gKPVv~l  115 (167)
T 1s2d_A          101 XIGFMRAM----HKPVILV  115 (167)
T ss_dssp             HHHHHHHT----TCCEEEE
T ss_pred             ehhhHhhC----CCeEEEE
Confidence            99988763    4456555

>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*

Probab=82.05  E-value=5.5  Score=26.57  Aligned_cols=75  Identities=17%  Similarity=0.134  Sum_probs=50.3

Q ss_pred             cchHHHHHHHHccCCc----ceEEeCC--C--------CC---C----ccchHHHHHHHHhcCeEEEEecCCccCchhhH
Q 041158           27 DNFTSHLYSALCHNNI----ETFIDND--L--------KR---G----DEISQSLLDTIEASTISIIIFSERYASSGWCL   85 (118)
Q Consensus        27 ~~fv~~L~~~L~~~Gi----~v~~d~~--~--------~~---G----~~~~~~i~~~i~~s~~~I~v~S~~~~~S~wc~   85 (118)
                      ..+..++.+.|+.+|.    .+|.-.+  .        ..   +    ..+.+.=.++|++|+++|.++.. -..+.-+.
T Consensus        18 ~~~~~~~~~~L~~~g~v~~~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~vvA~ldg-~~~D~GT~   96 (157)
T 1f8y_A           18 NKAYKEAMEALKENPTIDLENSYVPLDNQYKGIRVDEHPEYLHDKVWATATYNNDLNGIKTNDIMLGVYIP-DEEDVGLG   96 (157)
T ss_dssp             HHHHHHHHHHHHHCTTBCCTTSBCGGGCSGGGCCTTTCGGGGGCHHHHHHHHHHHHHHHHTSSEEEEECCG-GGCCHHHH
T ss_pred             HHHHHHHHHHHHHCCCccccceECcccccccccccccccccccChHHHHHHHHHhHHHHHhCCEEEEEcCC-CCCCccHH
Confidence            3678899999999985    6765332  2        11   1    12233445689999999999874 33567788


Q ss_pred             HHHHHHHHhhhhCCCEEEEEE
Q 041158           86 DELLKILECKHVYGQIVIPVF  106 (118)
Q Consensus        86 ~El~~~~~~~~~~~~~iiPI~  106 (118)
                      .|+..|..    .+++|+-+.
T Consensus        97 ~EiGyA~A----~gkPVv~~~  113 (157)
T 1f8y_A           97 MELGYALS----QGKYVLLVI  113 (157)
T ss_dssp             HHHHHHHH----TTCEEEEEE
T ss_pred             HHHHHHHH----CCCeEEEEE
Confidence            99998876    344665543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	118
d1fyva_	161	c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (H	3e-16
d1fyxa_	149	c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (H	3e-13

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.2 bits (166), Expect = 3e-16
 Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 3/108 (2%)

Query: 13  KHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFI-DNDLKRGDEISQSLLDTIEASTISI 71
           +   F+S+ G D+     + L   L    ++  + + +   G  I ++++  IE S  SI
Sbjct: 12  QFHAFISYSGHDSF-WVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSI 70

Query: 72  IIFSERYASSGWCLDELLKILECKHVYGQIV-IPVFCRVDPSHVRWQT 118
            + S  +  S WC  EL          G    I +     P +    +
Sbjct: 71  FVLSPNFVQSEWCHYELYFAHHNLFHEGSNSLILILLEPIPQYSIPSS 118

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.1 bits (145), Expect = 3e-13
 Identities = 19/104 (18%), Positives = 33/104 (31%), Gaps = 5/104 (4%)

Query: 16  IFLSFRGEDT---RDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISII 72
            F+S+   D     +     L +      +      D   G  I  +++D+IE S  ++ 
Sbjct: 8   AFVSYSERDAYWVENLMVQELENFNPPFKL-CLHKRDFIHGKWIIDNIIDSIEKSHKTVF 66

Query: 73  IFSERYASSGWCLDEL-LKILECKHVYGQIVIPVFCRVDPSHVR 115
           + SE +  S WC  EL               I +          
Sbjct: 67  VLSENFVKSEWCKYELDFSHFRLFDENNDAAILILLEPIEKKAI 110

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	118
d1fyva_	161	Toll-like receptor 1, TLR1 {Human (Homo sapiens) [	99.92
d1fyxa_	149	Toll-like receptor 2, TLR2 {Human (Homo sapiens) [	99.91
d2f62a1	152	Nucleoside 2-deoxyribosyltransferase {Trypanosoma	96.26
d1wu7a1	97	Histidyl-tRNA synthetase (HisRS), C-terminal domai	94.99
d1qe0a1	95	Histidyl-tRNA synthetase (HisRS), C-terminal domai	90.46
d1s2da_	167	Purine transdeoxyribosylase {Lactobacillus helveti	85.82
d1qf6a1	110	Threonyl-tRNA synthetase (ThrRS), C-terminal domai	85.08
d1kmma1	99	Histidyl-tRNA synthetase (HisRS), C-terminal domai	84.63
d1atia1	111	Glycyl-tRNA synthetase (GlyRS), C-terminal domain	84.45
d1f8ya_	156	Nucleoside 2-deoxyribosyltransferase {Lactobacillu	80.94
d1eiwa_	111	Hypothetical protein MTH538 {Archaeon Methanobacte	80.06

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=8.3e-27  Score=159.97  Aligned_cols=102  Identities=21%  Similarity=0.350  Sum_probs=90.9

Q ss_pred             CCCCCCeeeEEEEeeeccCccchH-HHHHHHHccCCcceEEeCC-CCCCccchHHHHHHHHhcCeEEEEecCCccCchhh
Q 041158            7 SPRNSNKHGIFLSFRGEDTRDNFT-SHLYSALCHNNIETFIDND-LKRGDEISQSLLDTIEASTISIIIFSERYASSGWC   84 (118)
Q Consensus         7 ~~~~~~~~dVFISys~~D~~~~fv-~~L~~~L~~~Gi~v~~d~~-~~~G~~~~~~i~~~i~~s~~~I~v~S~~~~~S~wc   84 (118)
                      ...+.++|||||||+++|.  .|| ..|...|+.+|+++|+|++ +.+|+.+.++|.++|++|+++|+|+||+|+.|+||
T Consensus         6 ~~~~~~~yDvFisys~~D~--~~v~~~L~~~Le~~g~~v~~d~~d~~~G~~~~~~i~~~i~~s~~~i~vlS~~~~~s~w~   83 (161)
T d1fyva_           6 ELQRNLQFHAFISYSGHDS--FWVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSIFVLSPNFVQSEWC   83 (161)
T ss_dssp             TSSSCCCEEEEEECCGGGH--HHHHHTHHHHHHTTTCCEECTTTTCCTTSCHHHHHHHHHHHEEEEEEEESHHHHHHTSH
T ss_pred             HcCCCCeeEEEEecChhHH--HHHHHHHHHHHHhCCCcceEeccccccccccHHHHHHHHHhCCEEEEEecCccccChHH
Confidence            4557889999999999985  577 5699999999999999988 99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhh-hhCCCEEEEEEeecC
Q 041158           85 LDELLKILECK-HVYGQIVIPVFCRVD  110 (118)
Q Consensus        85 ~~El~~~~~~~-~~~~~~iiPI~~~v~  110 (118)
                      ..|+..|+.+. ++++.++|||+++..
T Consensus        84 ~~E~~~a~~~~~~~~~~~lIpV~l~~~  110 (161)
T d1fyva_          84 HYELYFAHHNLFHEGSNSLILILLEPI  110 (161)
T ss_dssp             HHHHHTTSCCCSCSSCSSEEEEESSCC
T ss_pred             HHHHHHHHHHHHHcCCCceeEEEEecC
Confidence            99999988654 346778999999643

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.8e-26  Score=156.46  Aligned_cols=103  Identities=17%  Similarity=0.282  Sum_probs=88.9

Q ss_pred             CCCCeeeEEEEeeeccCccchHH-HHHHHHcc--CCcceEEeCC-CCCCccchHHHHHHHHhcCeEEEEecCCccCchhh
Q 041158            9 RNSNKHGIFLSFRGEDTRDNFTS-HLYSALCH--NNIETFIDND-LKRGDEISQSLLDTIEASTISIIIFSERYASSGWC   84 (118)
Q Consensus         9 ~~~~~~dVFISys~~D~~~~fv~-~L~~~L~~--~Gi~v~~d~~-~~~G~~~~~~i~~~i~~s~~~I~v~S~~~~~S~wc   84 (118)
                      ++.+.|||||||+++|.  .||. .|...|++  .|+++|+|++ +.+|+.+.++|.++|++|+++|+|+||+|++|+||
T Consensus         1 ~~~~~YDvFiSys~~D~--~~V~~~l~~~LE~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~S~~~i~vlS~~~l~s~wc   78 (149)
T d1fyxa_           1 SRNICYDAFVSYSERDA--YWVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWC   78 (149)
T ss_dssp             CCSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTH
T ss_pred             CCCCEEEEEEECchhhH--HHHHHHHHHHHHhcCCCceEEEecccccccchHHHHHHHHHHhCCEEEEEEcCccccccch
Confidence            46789999999999994  5774 68999976  4899999988 99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhh-hhCCCEEEEEEee-cCCCC
Q 041158           85 LDELLKILECK-HVYGQIVIPVFCR-VDPSH  113 (118)
Q Consensus        85 ~~El~~~~~~~-~~~~~~iiPI~~~-v~p~~  113 (118)
                      ..|+..|+... ++++.++|||+++ +...+
T Consensus        79 ~~E~~~a~~~~~~~~~~~iIpV~l~~~~~~~  109 (149)
T d1fyxa_          79 KYELDFSHFRLFDENNDAAILILLEPIEKKA  109 (149)
T ss_dssp             HHHSCCSCCTTCGGGTTCCEEEESSCCCTTT
T ss_pred             HHHHHHHHHHHHHcCCceEEEEEeccCchhh
Confidence            99998876543 4567899999996 44333

>d2f62a1 c.23.14.1 (A:9-160) Nucleoside 2-deoxyribosyltransferase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Nucleoside 2-deoxyribosyltransferase
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.26  E-value=0.0088  Score=38.86  Aligned_cols=71  Identities=14%  Similarity=0.065  Sum_probs=53.9

Q ss_pred             CccchHHHHHHHHccCCcceEEeCC--CCCCccchHHHHHHHHhcCeEEEEecC--CccCchhhHHHHHHHHHhh
Q 041158           25 TRDNFTSHLYSALCHNNIETFIDND--LKRGDEISQSLLDTIEASTISIIIFSE--RYASSGWCLDELLKILECK   95 (118)
Q Consensus        25 ~~~~fv~~L~~~L~~~Gi~v~~d~~--~~~G~~~~~~i~~~i~~s~~~I~v~S~--~~~~S~wc~~El~~~~~~~   95 (118)
                      ....+..++.+.|+++|+.++.-.+  ......+.+.-.++|++|+++|.+++|  .-..+.-+..|+..+....
T Consensus        16 ~~~~~~~~i~~~l~~~g~~~~~P~d~~~~~~~~If~~d~~~i~~~D~VIA~Ld~frg~~~D~GTa~EiG~A~alg   90 (152)
T d2f62a1          16 MGASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALN   90 (152)
T ss_dssp             TTHHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHCCCEEeccccccchhHHHHHHHHHHHHHhCCEEEEEccccCCCCCCchHHHHHHHHHHCC
Confidence            3346889999999999999986433  333344656667899999999999985  3345778999999988743

>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=94.99  E-value=0.036  Score=32.71  Aligned_cols=62  Identities=15%  Similarity=0.200  Sum_probs=45.3

Q ss_pred             CeeeEEEEeeeccCccchHHHHHHHHccCCcceEEeCCCCCCccchHHHHHHHHhcCeEEEEecCC
Q 041158           12 NKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSER   77 (118)
Q Consensus        12 ~~~dVFISys~~D~~~~fv~~L~~~L~~~Gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~I~v~S~~   77 (118)
                      ...+|||..-+... ..++..|...|++.|+++-+|..   +..+..++..|-..---+++++.++
T Consensus         2 ~~~~V~i~~~g~~~-~~~~~~l~~~Lr~~gi~v~~d~~---~~~l~kq~~~A~~~~~~~~iiiG~~   63 (97)
T d1wu7a1           2 EKKSVYICRVGKIN-SSIMNEYSRKLRERGMNVTVEIM---ERGLSAQLKYASAIGADFAVIFGER   63 (97)
T ss_dssp             SSCEEEEEEESSCC-HHHHHHHHHHHHTTTCEEEECCS---CCCHHHHHHHHHHTTCSEEEEEEHH
T ss_pred             CCceEEEEEeCHHH-HHHHHHHHHHHHHCCCEEEEECC---CCcHHHHHHHHHhcCCCeEEecCCc
Confidence            46799999877765 47999999999999999998753   4456666766666544455555544

>d1qe0a1 c.51.1.1 (A:326-420) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=90.46  E-value=0.2  Score=28.98  Aligned_cols=61  Identities=18%  Similarity=0.279  Sum_probs=42.7

Q ss_pred             CeeeEEEEeeeccCccchHHHHHHHHccCCcceEEeCCCCCCccchHHHHHHHHhcCeEEEEecC
Q 041158           12 NKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSE   76 (118)
Q Consensus        12 ~~~dVFISys~~D~~~~fv~~L~~~L~~~Gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~I~v~S~   76 (118)
                      ...||||.--+.+. ...+..|...|++.|+++-+|..   +..+..++..|=..---+++|+.+
T Consensus         3 ~~~dv~ii~~~~~~-~~~a~~i~~~Lr~~gi~v~~d~~---~~~l~kq~~~A~~~~~~~~iiiG~   63 (95)
T d1qe0a1           3 ENLDLFIVTMGDQA-DRYAVKLLNHLRHNGIKADKDYL---QRKIKGQMKQADRLGAKFTIVIGD   63 (95)
T ss_dssp             CCCSEEEEECHHHH-HHHHHHHHHHHHTTTCCEEECCS---CCCHHHHHHHHHHTTCSEEEEECH
T ss_pred             CCCeEEEEEeCHHH-HHHHHHHHHHHHHCCCcEEecCC---CCCHHHHHHHHHhcCCCEEEEEcc
Confidence            35799997655443 47889999999999999988743   345666666666654455555554

>d1s2da_ c.23.14.1 (A:) Purine transdeoxyribosylase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Purine transdeoxyribosylase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=85.82  E-value=2.8  Score=26.44  Aligned_cols=90  Identities=17%  Similarity=0.090  Sum_probs=55.2

Q ss_pred             eeeEEEEeee-ccCccchHHHHHHHHccCC--cceEEeC--CC--------CCC----cc----chHHHHHHHHhcCeEE
Q 041158           13 KHGIFLSFRG-EDTRDNFTSHLYSALCHNN--IETFIDN--DL--------KRG----DE----ISQSLLDTIEASTISI   71 (118)
Q Consensus        13 ~~dVFISys~-~D~~~~fv~~L~~~L~~~G--i~v~~d~--~~--------~~G----~~----~~~~i~~~i~~s~~~I   71 (118)
                      +.-|||.=.- .+....+..++.+.|+++|  +.+|.-.  ..        +.+    ..    +...=.++|++|+++|
T Consensus         7 ~~kIYLAgP~F~~~~~~~~~~~~~~L~~~~~~~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~~If~~D~~~i~~sD~vI   86 (167)
T d1s2da_           7 TGKIYLGSPFYSDAQRERAAKAKELLAKNPSIAHVFFPFDDGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATCGV   86 (167)
T ss_dssp             CEEEEEECCCSSHHHHHHHHHHHHHHTTCTTEEEEECTTC-CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHHHHCSEEE
T ss_pred             CceEEEECCCCCHHHHHHHHHHHHHHHhCCCcceEECCcccccccccccccccccccchHHHHHHHHHHHHHHHHCCEEE
Confidence            4456664311 1223468899999999988  5666321  11        001    01    2223345899999999


Q ss_pred             EEecCCccCchhhHHHHHHHHHhhhhCCCEEEEEEe
Q 041158           72 IIFSERYASSGWCLDELLKILECKHVYGQIVIPVFC  107 (118)
Q Consensus        72 ~v~S~~~~~S~wc~~El~~~~~~~~~~~~~iiPI~~  107 (118)
                      +++..... +.-+..|+..|...    +.+||-+.-
T Consensus        87 A~ldg~~~-D~GTa~EiG~A~a~----gKPvi~~~~  117 (167)
T d1s2da_          87 FLYDMDQL-DDGSAFEIGFMRAM----HKPVILVPF  117 (167)
T ss_dssp             EEEESSSC-CHHHHHHHHHHHHT----TCCEEEEEE
T ss_pred             EEeCCCCC-CccHHHHHHHHHHC----CCeEEEEec
Confidence            99987654 55788899998864    446765543

>d1qf6a1 c.51.1.1 (A:533-642) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Threonyl-tRNA synthetase (ThrRS), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=85.08  E-value=1.4  Score=25.84  Aligned_cols=63  Identities=8%  Similarity=0.146  Sum_probs=40.6

Q ss_pred             eeeEEEEeeeccCccchHHHHHHHHccCCcceEEeCCCCCCccchHHHHHHHHhcCeEEEEecCCcc
Q 041158           13 KHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSERYA   79 (118)
Q Consensus        13 ~~dVFISys~~D~~~~fv~~L~~~L~~~Gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~I~v~S~~~~   79 (118)
                      .++|.|--=+.+ ...++..|...|+..|+++.+|.+   +..+...+.+|-..---.++|+.++-+
T Consensus         7 P~Qv~iipi~~~-~~~~a~~i~~~Lr~~gi~v~~d~~---~~~l~~ki~~a~~~g~p~~iiiG~~E~   69 (110)
T d1qf6a1           7 PVQVVIMNITDS-QSEYVNELTQKLSNAGIRVKADLR---NEKIGFKIREHTLRRVPYMLVCGDKEV   69 (110)
T ss_dssp             SSCEEEEESSHH-HHHHHHHHHHHHHTTTCCEEEECC---SSCHHHHHHHHHHTTCSEEEEECTTTG
T ss_pred             CceEEEEeccHH-HHHHHHHHHHHHHHhhccccccCC---ccchhHHHHHHHHcCCCEEEEECchHH
Confidence            355666432332 246899999999999999999864   334445566555544456666666643

>d1kmma1 c.51.1.1 (A:326-424) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=84.63  E-value=0.64  Score=26.85  Aligned_cols=60  Identities=15%  Similarity=0.248  Sum_probs=41.0

Q ss_pred             eeeEEEEeeeccCccchHHHHHHHHccC--CcceEEeCCCCCCccchHHHHHHHHhcCeEEEEecC
Q 041158           13 KHGIFLSFRGEDTRDNFTSHLYSALCHN--NIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSE   76 (118)
Q Consensus        13 ~~dVFISys~~D~~~~fv~~L~~~L~~~--Gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~I~v~S~   76 (118)
                      ..||||-.-+.+. ...+..|...|++.  |+++-+|..   +..+..++..|-..---+++|+.+
T Consensus         3 ~vdv~vi~~~~~~-~~~a~~la~~LR~~~~gi~v~~~~~---~~~l~kq~k~A~~~~~~~~iiiG~   64 (99)
T d1kmma1           3 VVDIYLVASGADT-QSAAMALAERLRDELPGVKLMTNHG---GGNFKKQFARADKWGARVAVVLGE   64 (99)
T ss_dssp             SCSEEEECCSTTH-HHHHHHHHHHHHHHSTTCCEEECCS---CCCHHHHHHHHHHHTCSEEEECCH
T ss_pred             CCEEEEEECCHHH-HHHHHHHHHHHHhcCCCeEEEEeCC---CCCHHHHHHHHHHhCCChhhhcCc
Confidence            5799998765543 47888999999876  999988642   345666777766644445555544

>d1atia1 c.51.1.1 (A:395-505) Glycyl-tRNA synthetase (GlyRS), C-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Glycyl-tRNA synthetase (GlyRS), C-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=84.45  E-value=0.15  Score=30.67  Aligned_cols=49  Identities=10%  Similarity=0.007  Sum_probs=34.0

Q ss_pred             cchHHHHHHHHccCCcceEEeCC-CCCCccchHHHHHHHHhcCeEEEEecCCcc
Q 041158           27 DNFTSHLYSALCHNNIETFIDND-LKRGDEISQSLLDTIEASTISIIIFSERYA   79 (118)
Q Consensus        27 ~~fv~~L~~~L~~~Gi~v~~d~~-~~~G~~~~~~i~~~i~~s~~~I~v~S~~~~   79 (118)
                      ..++..|+..|...|+++.+|++ ..+|..+.+.-..+    -=+++++.+.-+
T Consensus        20 ~~~a~~l~~~L~~~gi~v~~Ddr~~~~G~K~~~~~~~g----vP~~iiIG~kel   69 (111)
T d1atia1          20 TEYAKRLKARLLALGLGRVLYEDTGNIGKAYRRHDEVG----TPFAVTVDYDTI   69 (111)
T ss_dssp             HHHHHHHHHHHHTTCSSCEEECCCSCHHHHHHHHHHTT----CSEEEEECHHHH
T ss_pred             HHHHHHHHhhhccccceeEeecCCCCHHHHHHHHHHcC----CCEEEEECcHHh
Confidence            57899999999999999999987 77777655433222    234555555443

>d1f8ya_ c.23.14.1 (A:) Nucleoside 2-deoxyribosyltransferase {Lactobacillus leichmannii [TaxId: 28039]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Nucleoside 2-deoxyribosyltransferase
species: Lactobacillus leichmannii [TaxId: 28039]

Probab=80.94  E-value=2.9  Score=26.21  Aligned_cols=76  Identities=17%  Similarity=0.120  Sum_probs=49.5

Q ss_pred             cchHHHHHHHHccC----CcceEEe--CC---CCCC--------cc----chHHHHHHHHhcCeEEEEecCCccCchhhH
Q 041158           27 DNFTSHLYSALCHN----NIETFID--ND---LKRG--------DE----ISQSLLDTIEASTISIIIFSERYASSGWCL   85 (118)
Q Consensus        27 ~~fv~~L~~~L~~~----Gi~v~~d--~~---~~~G--------~~----~~~~i~~~i~~s~~~I~v~S~~~~~S~wc~   85 (118)
                      ..+..++.+.|+++    |..+|.-  +.   ...+        ..    +..+=.++|++|+++|+++.... .+.-+.
T Consensus        17 ~~~~~~~~~~L~~~~~~~~~~vf~P~~~~~~~~~~~~~~~~~~~~~~a~~If~~D~~~i~~aD~via~ldg~~-~D~Gta   95 (156)
T d1f8ya_          17 NKAYKEAMEALKENPTIDLENSYVPLDNQYKGIRVDEHPEYLHDKVWATATYNNDLNGIKTNDIMLGVYIPDE-EDVGLG   95 (156)
T ss_dssp             HHHHHHHHHHHHHCTTBCCTTSBCGGGCSGGGCCTTTCGGGGGCHHHHHHHHHHHHHHHHTSSEEEEECCGGG-CCHHHH
T ss_pred             HHHHHHHHHHHHhccccCCceEeCCccccccccccccccccccchHHHHHHHHHHHHHHHHCCEEEEEeCCCC-CCCCHH
Confidence            46788999999874    5667642  11   1111        11    22233668999999999988653 456788


Q ss_pred             HHHHHHHHhhhhCCCEEEEEEe
Q 041158           86 DELLKILECKHVYGQIVIPVFC  107 (118)
Q Consensus        86 ~El~~~~~~~~~~~~~iiPI~~  107 (118)
                      .|+..|...    +.+||-+.-
T Consensus        96 ~EiG~A~a~----gKpvi~~~~  113 (156)
T d1f8ya_          96 MELGYALSQ----GKYVLLVIP  113 (156)
T ss_dssp             HHHHHHHHT----TCEEEEEEC
T ss_pred             HHHHHHHHc----CCcEEEEec
Confidence            999998874    446665543

>d1eiwa_ c.23.3.1 (A:) Hypothetical protein MTH538 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Hypothetical protein MTH538
family: Hypothetical protein MTH538
domain: Hypothetical protein MTH538
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=80.06  E-value=0.47  Score=28.81  Aligned_cols=39  Identities=13%  Similarity=-0.025  Sum_probs=32.8

Q ss_pred             HhcCeEEEEecCCccCchhhHHHHHHHHHhhhhCCCEEEEEEe
Q 041158           65 EASTISIIIFSERYASSGWCLDELLKILECKHVYGQIVIPVFC  107 (118)
Q Consensus        65 ~~s~~~I~v~S~~~~~S~wc~~El~~~~~~~~~~~~~iiPI~~  107 (118)
                      ++++++|++.......|+|...|+..+.+    .+.+||-|--
T Consensus        37 ~~~~vvIVL~G~yt~~r~WI~~EI~~A~~----~~KpIIgV~p   75 (111)
T d1eiwa_          37 EDADAVIVLAGLWGTRRDEILGAVDLARK----SSKPIITVRP   75 (111)
T ss_dssp             SSCSEEEEEGGGTTTSHHHHHHHHHHHTT----TTCCEEEECC
T ss_pred             cCCCEEEEEeeccccCCHHHHHHHHHHHH----cCCCeEEEEe
Confidence            78899999999999999999999998765    4557777753