Citrus Sinensis ID: 041159
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 356 | ||||||
| 449503225 | 407 | PREDICTED: glycosyltransferase-like doma | 0.980 | 0.857 | 0.578 | 1e-120 | |
| 449459640 | 407 | PREDICTED: glycosyltransferase-like doma | 0.980 | 0.857 | 0.578 | 1e-120 | |
| 449484981 | 372 | PREDICTED: glycosyltransferase-like doma | 0.893 | 0.854 | 0.562 | 1e-105 | |
| 449526607 | 335 | PREDICTED: glycosyltransferase-like doma | 0.769 | 0.817 | 0.572 | 9e-92 | |
| 297737475 | 420 | unnamed protein product [Vitis vinifera] | 0.707 | 0.6 | 0.638 | 2e-90 | |
| 225456057 | 462 | PREDICTED: uncharacterized glycosyltrans | 0.963 | 0.742 | 0.415 | 9e-77 | |
| 297824111 | 498 | hypothetical protein ARALYDRAFT_483244 [ | 0.969 | 0.692 | 0.392 | 6e-76 | |
| 255585488 | 533 | glycosyltransferase, putative [Ricinus c | 0.839 | 0.560 | 0.403 | 2e-75 | |
| 224139884 | 444 | predicted protein [Populus trichocarpa] | 0.952 | 0.763 | 0.377 | 4e-75 | |
| 317106706 | 530 | JHL06B08.8 [Jatropha curcas] | 0.912 | 0.613 | 0.386 | 5e-75 |
| >gi|449503225|ref|XP_004161896.1| PREDICTED: glycosyltransferase-like domain-containing protein 2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 207/358 (57%), Positives = 270/358 (75%), Gaps = 9/358 (2%)
Query: 1 RIANNSLTVYIESSQSQVKR-----VIRPYP---SKLALDYVTPVQIV-NGDADHLPACH 51
RI N +L YI ++ + +I PY K+ L VTP+QI+ + LP C
Sbjct: 43 RINNTNLEFYISTNNDSQQNNFSPILIHPYARQEDKITLRDVTPLQIIFQPNKTLLPLCQ 102
Query: 52 FIHDVPAVVFSTGGFAGNQFHEFNELIIPLFITSRHFRSQVKFVIIDYKPWWVSKYSNIL 111
FIH+VP ++FSTGGF GN FHEF+E IIPLFITS HF+++V+F+I D+K WWV KY+ IL
Sbjct: 103 FIHNVPVLIFSTGGFTGNLFHEFDETIIPLFITSYHFQTRVRFLITDHKTWWVQKYNRIL 162
Query: 112 SLLTRYEVINPAADGNVHCFPAAVIGLKYHGFLSLNSTDIPGGYSMVDFKRFLREAYSLK 171
S L+R+ V+NPA DG+VHCF VIGLK+H LSLN+TDIPGGYSM DF+ FLR+ Y+LK
Sbjct: 163 SGLSRFNVVNPAEDGSVHCFNGGVIGLKFHNILSLNNTDIPGGYSMSDFRSFLRQTYNLK 222
Query: 172 IKNVSEIQREKPVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVV 231
+ NVSE+ +KP+++ ISR SR+F+NE EMV M++E+GF+V+ T P RMSNL+KF+ VV
Sbjct: 223 VNNVSELSGKKPMVMLISRQTSRRFMNEGEMVEMMKEVGFEVMTTTPQRMSNLDKFSSVV 282
Query: 232 NSCSVLVGAHGAGLTTELFLPAGAVMVQVVPLGLEWGSTYYFGVPAREMGVQYLEYKTEP 291
N CSV++GAHGAGLT E+FL GAV+VQVVP GL+W STY+FG PA EM +QYLEYK E
Sbjct: 283 NLCSVIIGAHGAGLTNEVFLANGAVVVQVVPFGLDWPSTYFFGKPAAEMELQYLEYKIEA 342
Query: 292 EESTLSETYSRDDPIITDPASLFAKDYFAARAVYIDAQNLKINLTRFRQTIVQAMEHI 349
+ES+L + Y + P+I DP S+FA+ YFA+RA+YID QNLKINLTRFR T++Q + I
Sbjct: 343 KESSLWDKYGENHPVIRDPESIFAQGYFASRAIYIDEQNLKINLTRFRDTMIQVKKLI 400
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449459640|ref|XP_004147554.1| PREDICTED: glycosyltransferase-like domain-containing protein 2-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449484981|ref|XP_004157036.1| PREDICTED: glycosyltransferase-like domain-containing protein 2-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449526607|ref|XP_004170305.1| PREDICTED: glycosyltransferase-like domain-containing protein 2-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|297737475|emb|CBI26676.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|225456057|ref|XP_002277670.1| PREDICTED: uncharacterized glycosyltransferase AGO61-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|297824111|ref|XP_002879938.1| hypothetical protein ARALYDRAFT_483244 [Arabidopsis lyrata subsp. lyrata] gi|297325777|gb|EFH56197.1| hypothetical protein ARALYDRAFT_483244 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|255585488|ref|XP_002533436.1| glycosyltransferase, putative [Ricinus communis] gi|223526710|gb|EEF28943.1| glycosyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|224139884|ref|XP_002323324.1| predicted protein [Populus trichocarpa] gi|222867954|gb|EEF05085.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|317106706|dbj|BAJ53206.1| JHL06B08.8 [Jatropha curcas] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 356 | ||||||
| TAIR|locus:2062709 | 500 | AT2G41640 [Arabidopsis thalian | 0.915 | 0.652 | 0.391 | 6.3e-69 | |
| TAIR|locus:2082598 | 504 | AT3G57380 [Arabidopsis thalian | 0.837 | 0.591 | 0.417 | 1.3e-66 | |
| TAIR|locus:2076274 | 494 | AT3G10320 [Arabidopsis thalian | 0.831 | 0.599 | 0.4 | 2e-63 | |
| TAIR|locus:2092757 | 384 | AT3G18170 [Arabidopsis thalian | 0.910 | 0.843 | 0.379 | 1.5e-60 | |
| TAIR|locus:2063793 | 452 | AT2G03370 [Arabidopsis thalian | 0.966 | 0.761 | 0.360 | 1.2e-58 | |
| TAIR|locus:2092762 | 470 | AT3G18180 [Arabidopsis thalian | 0.851 | 0.644 | 0.370 | 1.9e-58 | |
| TAIR|locus:2063809 | 455 | AT2G03360 [Arabidopsis thalian | 0.898 | 0.703 | 0.370 | 4.6e-57 | |
| UNIPROTKB|F1SRD5 | 580 | GTDC2 "Uncharacterized protein | 0.668 | 0.410 | 0.274 | 5.1e-12 | |
| UNIPROTKB|Q5NDF2 | 580 | GTDC2 "Glycosyltransferase-lik | 0.668 | 0.410 | 0.270 | 5.4e-11 | |
| MGI|MGI:2143424 | 605 | Gtdc2 "glycosyltransferase-lik | 0.668 | 0.393 | 0.266 | 7.5e-11 |
| TAIR|locus:2062709 AT2G41640 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 699 (251.1 bits), Expect = 6.3e-69, P = 6.3e-69
Identities = 134/342 (39%), Positives = 215/342 (62%)
Query: 22 IRPYPSKL---ALDYVTPVQIVNGDADHLP--ACHFIHDVPAVVFSTGGFAGNQFHEFNE 76
I+PY K +D V + ++ D++ C HDVPAV FSTGG+ GN +HEFN+
Sbjct: 142 IKPYTRKWETSVMDTVQELNLITKDSNKSSDRVCDVYHDVPAVFFSTGGYTGNVYHEFND 201
Query: 77 LIIPLFITSRHFRSQVKFVIIDYKPWWVSKYSNILSLLTRYEVINPAADGNVHCFPAAVI 136
IIPLFITS+H+ +V FVI++Y WW KY +++S L+ Y +++ D HCF A +
Sbjct: 202 GIIPLFITSQHYNKKVVFVIVEYHDWWEMKYGDVVSQLSDYPLVDFNGDTRTHCFKEATV 261
Query: 137 GLKYHGFLSLNSTDIPGGYSMVDFKRFLREAYSLKIKNVSEIQRE----------KPVLI 186
GL+ H L++NS+ + G ++VDF+ L YS +I+++++ + E KP L+
Sbjct: 262 GLRIHDELTVNSSLVIGNQTIVDFRNVLDRGYSHRIQSLTQEETEANVTALDFKKKPKLV 321
Query: 187 FISR-GNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHGAGL 245
+SR G+SR LNE+ +V + E+ GF V V RP + + + K +N+ V++G HGA +
Sbjct: 322 ILSRNGSSRAILNENLLVELAEKTGFNVEVLRPQKTTEMAKIYRSLNTSDVMIGVHGAAM 381
Query: 246 TTELFLPAGAVMVQVVPLGLEWGSTYYFGVPAREMGVQYLEYKTEPEESTLSETYSRDDP 305
T LFL V +Q++PLG +W + Y+G PA+++G++Y+ YK P+ES+L E Y +DDP
Sbjct: 382 THFLFLKPKTVFIQIIPLGTDWAAETYYGEPAKKLGLKYVGYKIAPKESSLYEEYGKDDP 441
Query: 306 IITDPASLFAKDYFAARAVYIDAQNLKINLTRFRQTIVQAME 347
+I DP SL K + + +Y+ QN+K++L RFR+T+ ++ +
Sbjct: 442 VIRDPDSLNDKGWEYTKKIYLQGQNVKLDLRRFRETLTRSYD 483
|
|
| TAIR|locus:2082598 AT3G57380 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2076274 AT3G10320 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2092757 AT3G18170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2063793 AT2G03370 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2092762 AT3G18180 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2063809 AT2G03360 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1SRD5 GTDC2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q5NDF2 GTDC2 "Glycosyltransferase-like domain-containing protein 2" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| MGI|MGI:2143424 Gtdc2 "glycosyltransferase-like domain containing 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 356 | |||
| pfam04577 | 206 | pfam04577, DUF563, Protein of unknown function (DU | 1e-14 | |
| COG4421 | 368 | COG4421, COG4421, Capsular polysaccharide biosynth | 2e-05 |
| >gnl|CDD|218156 pfam04577, DUF563, Protein of unknown function (DUF563) | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 1e-14
Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 14/136 (10%)
Query: 154 GYSMVDFKRFLREAYSLKIKNVSEIQREKPVLIFISRGNS--RKFLNEDEMVVMIEELGF 211
+ + L ++ + + KP ++ISR + R+ LNEDE+ + + GF
Sbjct: 73 PFPAGGYFGPLLPRLRDLLRERFNLSKIKPRKVYISRKKAGRRRILNEDELEEALPKYGF 132
Query: 212 QVVVTRPNRMSNLNKFTEVV---NSCSVLVGAHGAGLTTELFLPAGAVMVQVVPLGLEWG 268
++V P +S E V +S V+VG HG+ LT +F+P G +V++VP
Sbjct: 133 EIV--DPETLS----LEEQVKLFSSAKVIVGPHGSALTNLIFMPPGTGVVELVPPN--RL 184
Query: 269 STYYFGVPAREMGVQY 284
+ + A +G+ Y
Sbjct: 185 DPSFRNL-AALLGLDY 199
|
Family of uncharacterized proteins. Length = 206 |
| >gnl|CDD|226845 COG4421, COG4421, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 356 | |||
| KOG4698 | 475 | consensus Uncharacterized conserved protein [Funct | 100.0 | |
| PF04577 | 206 | DUF563: Protein of unknown function (DUF563); Inte | 99.97 | |
| COG4421 | 368 | Capsular polysaccharide biosynthesis protein [Carb | 99.82 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 92.09 | |
| PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 83.16 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 82.0 |
| >KOG4698 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-69 Score=534.32 Aligned_cols=350 Identities=37% Similarity=0.666 Sum_probs=326.1
Q ss_pred CCCCCceEEEEEeCC-----CCceeeecCCCccc---ccCCCccEEEecCCCCCCCCceeeeeCceEEEEcCCCCCCchh
Q 041159 1 RIANNSLTVYIESSQ-----SQVKRVIRPYPSKL---ALDYVTPVQIVNGDADHLPACHFIHDVPAVVFSTGGFAGNQFH 72 (356)
Q Consensus 1 r~~~~~~~~~~~~~~-----~~~~~~i~py~rk~---~m~~~~e~~~~~~~~~~~~~C~~~~~~Pavv~~~~gy~~N~~H 72 (356)
|+||.++|+++..+. .+.+|+||||+||| +|+.|+|+++.........+|+++|++||++|++|||++|.||
T Consensus 105 r~h~~~~~~~~~~~~~~~~s~~~~e~ikpy~rk~~~~vmp~vre~~l~~~~~~~~r~c~v~~~~pa~vfs~Gg~tgn~yh 184 (475)
T KOG4698|consen 105 RTHPDSSTVLLTLGRLLTFSGRLVEKIKPYTRKGETWVMPEVRELNLLVRPGSEIRRCDVNHEVPAIVFSTGGYTGNEYH 184 (475)
T ss_pred ccCcchhhhhhhccchhhhccccchhcccccccccccccccccccceEEcCCcccceeeeecccchheeecCCcchhhHH
Confidence 789999999887763 35899999999999 9999999999955556678999999999999999999999999
Q ss_pred hhhHhHHHHHHHhh--hcCCcceEEEecCCcchhhhHHHHHHhhcCCccccCCCCCCeeeecceEEeecccCCCccCCCC
Q 041159 73 EFNELIIPLFITSR--HFRSQVKFVIIDYKPWWVSKYSNILSLLTRYEVINPAADGNVHCFPAAVIGLKYHGFLSLNSTD 150 (356)
Q Consensus 73 ~~~D~liplf~t~~--~~~~~v~lvi~d~~~~w~~~y~~ll~~ls~~~ii~l~~~~~~~CF~~~ivgl~~~~~l~~dp~~ 150 (356)
+|+|+++|||++.+ .|++++++++++..+||..+|.+++++||+||+++++.+..+|||++++|||..|.++.++|..
T Consensus 185 df~d~~ipL~it~~~~~~n~ev~~li~~~~~ww~~kf~Dvv~~lSn~~~v~~~~~~~ThcF~~~~vgL~~h~~y~v~~t~ 264 (475)
T KOG4698|consen 185 DFNDGIIPLFITEAELRFNKEVQFLITETHSWWDMKFGDVVRQLSNYPVVDFDAELRTHCFKEAIVGLVSHFPYAVNPTQ 264 (475)
T ss_pred HHHhhhhhhhcccchhcccccEEEEEEEcchhhhhhHHHHHHhcCCCceEEecCCceEEEeeeeeeeeeecccccccCCc
Confidence 99999999999999 7899999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCC--CcHHHHHHHHHHHhCCCcc--Cc-ccccCCCcEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHH
Q 041159 151 IPGG--YSMVDFKRFLREAYSLKIK--NV-SEIQREKPVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLN 225 (356)
Q Consensus 151 ~~~~--~~i~~F~~~l~~~~~l~~~--~~-~~~~~~~pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~ 225 (356)
.+++ .++.+|++++..+|+.... .. .+.+.++||+++++|.++|.|+|++||.++++..||+|.++++++ +++.
T Consensus 265 ~~~~~~~s~~~fr~~l~~a~~~~i~~~~~t~~~~~kkpri~~lsR~~~r~Ilne~el~~~~~~~gf~v~~~~~~~-t~v~ 343 (475)
T KOG4698|consen 265 PPPNGTLSMLDFRNLLDKALSPRIPEANVTAPEPWKKPRITILSRAGSRAILNEDELPRMLEDIGFEVSVLRPDR-TEVA 343 (475)
T ss_pred CCCccccccccHHHHHHHHhcccccccccCCcChhhCCceEEEecccchhhhcchhhhHHHHhCCCceEEecccc-cchh
Confidence 7765 7999999999999976331 11 233456799999999999999999999999999999999999986 9999
Q ss_pred HHHHHHhcCCEEEEeehhhhhhhcccCCCcEEEEEecCC-CcCCCCCchHHHHhhcCCeEEEEEecCCCCcccccCCCCC
Q 041159 226 KFTEVVNSCSVLVGAHGAGLTTELFLPAGAVMVQVVPLG-LEWGSTYYFGVPAREMGVQYLEYKTEPEESTLSETYSRDD 304 (356)
Q Consensus 226 eq~~~~~~advlvg~HGAgLtn~lF~~pgs~viEi~P~~-~~~~~~~~y~~lA~~~gl~Y~~y~~~~~essl~~~~~~~~ 304 (356)
+|+++.+++|||+|+|||||||++|+||++.+|||.|.| .+|.+..+|..+|+.|+++|.+|++.++||+|.++|+.|+
T Consensus 344 ~~~~i~~s~~vmiGvHGa~lth~lfl~~~~~~iqi~pcg~~~w~a~~a~~~p~k~~~l~y~~ykI~~~es~l~~~y~~d~ 423 (475)
T KOG4698|consen 344 KQLRITNSSDVMIGVHGAGLTHLLFLPPWAGVIQIYPCGDPGWAAKLARLRPAKYMTLEYAEYKIRAEESELYHKYGGDN 423 (475)
T ss_pred hhhheeeccceeeeccCccceeEEecCCcceEEEEEECCCccchhhhhhccccceeccccceeEEeecccceeeeccCCC
Confidence 999999999999999999999999999999999999999 8999999999999999999999999999999999999999
Q ss_pred CcccCCCCccchhhHHHH-hhhcCCccEEEehHHHHHHHHHHHHHhhh
Q 041159 305 PIITDPASLFAKDYFAAR-AVYIDAQNLKINLTRFRQTIVQAMEHIRM 351 (356)
Q Consensus 305 ~~~~dP~~~~~~gw~~~~-~~yl~~qnv~vd~~~f~~~L~~a~~~l~~ 351 (356)
+++.||.|..++||..++ .+|+..|+|++|+.||++.+.+|++....
T Consensus 424 ~~v~dp~s~~~~~f~~~k~~~yl~~q~v~ld~nRf~~~~~~a~~~~~~ 471 (475)
T KOG4698|consen 424 TIVFDPISFQKKGFEETKKKVYLELQAVRLDINRFRKTLVKAYLKEIT 471 (475)
T ss_pred ceecccceeccccceeeeeeeeEeEeeeehhhhhcccchhHHHHHHHH
Confidence 999999999999999888 89999999999999999999999977654
|
|
| >PF04577 DUF563: Protein of unknown function (DUF563); InterPro: IPR007657 This is a family of uncharacterised glycosyltransferases belonging to glycosyltransferase family 61 | Back alignment and domain information |
|---|
| >COG4421 Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
| >PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 356 | |||
| d1gdha2 | 129 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 84.83 | |
| d2bona1 | 295 | Lipid kinase YegS {Escherichia coli [TaxId: 562]} | 80.58 |
| >d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=84.83 E-value=2 Score=33.05 Aligned_cols=92 Identities=11% Similarity=0.203 Sum_probs=64.9
Q ss_pred CcEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeehhhhhhhcc--cCCCcEEEE
Q 041159 182 KPVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHGAGLTTELF--LPAGAVMVQ 259 (356)
Q Consensus 182 ~pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HGAgLtn~lF--~~pgs~viE 259 (356)
|||+++ .+ .+ .++.++.+++. |+++....+..++-+|.++...++|++|...+..++.-+| +|++-.+|-
T Consensus 1 K~kVli-t~----~~--~~~~~~~l~~~-~~v~~~~~~~~~s~~el~~~~~~~d~ii~~~~~~i~~~~l~~~~~~LK~I~ 72 (129)
T d1gdha2 1 KKKILI-TW----PL--PEAAMARARES-YDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEVIDRIPENIKCIS 72 (129)
T ss_dssp CCEEEE-SS----CC--CHHHHHHHHTT-SEEEECCSTTCCCHHHHHHHHTTCSEEEEETTSCBCHHHHHHSCTTCCEEE
T ss_pred CCEEEE-eC----CC--CHHHHHHHHcC-CcEEEeCCCCCCCHHHHHHHhcCCCEEEEcCCchhhhHHHhhhhhcceeee
Confidence 567654 32 22 44677778764 5877654444588899999999999999888888999999 566778887
Q ss_pred EecCCCcCCCCCchHHHHhhcCCeEE
Q 041159 260 VVPLGLEWGSTYYFGVPAREMGVQYL 285 (356)
Q Consensus 260 i~P~~~~~~~~~~y~~lA~~~gl~Y~ 285 (356)
-+.-|+++. . -..|+..|+.-.
T Consensus 73 ~~gvG~d~I---D-~~~a~~~gI~V~ 94 (129)
T d1gdha2 73 TYSIGFDHI---D-LDACKARGIKVG 94 (129)
T ss_dssp EESSCCTTB---C-HHHHHHTTCEEE
T ss_pred ecccCCccc---c-HHHHHhCCCEEE
Confidence 777775432 2 345677887754
|
| >d2bona1 e.52.1.2 (A:5-299) Lipid kinase YegS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|