Citrus Sinensis ID: 041168

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------
Protein Sequence
RSALLQFKQSLTVVQCSFDDYPSAYPKVASWSQEEENRDCCLWDGIKCNEDNGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTALSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYALAN
Secondary Structure (PSIPRED)
cHHHHHHHHccccccccccccccccccccccccccccccccccccEEEccccccEEEEEccccccEEEEcccccccccccccEEEccccccccccccHHHHccccccccccccccccccccccccccccEEEccccccccccccccHHHHHHccccccEEEcccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEEccccccccccccccccccccccEEEEccccccccccccHHHHcHHHHHHHccccccccccHHHHcccccEEEEcccccccccccccccHHHHHccccccEEEcccccccccccHcccc
Coil and Loop (DISEMBL)
rsallqfkqsLTVVQCsfddypsaypkvaswsqeeenrdcclwdgikcnednghvirldltssclygsinsssslFQLVHLEWLVlsnnhfnfseipseIKNLsrltalsnpsffgqipaellelsdlesldlsfnnfhlklqgpSLANLAEKLANLKVLHLgqvntastvpyalan
Flexible Loop (DISEMBL)
rsallqfkqsltvvqcsfddyPSAYPKVASWSQEEENRDCCLWDGIKCNEDNGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTALSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHlgqvntastvpyalan
Low Complexity Region (SEG)
RSALLQFKQSLTVVQCSFDDYPSAYPKVASWSQEEENRDCCLWDGIKCNEDNGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTALSNPSFFGQIPAellelsdlesldlsFNNFHLKLQGPSlanlaeklanlkvlHLGQVNTASTVPYALAN
Disordered region (IsUnstruct)
*****QFKQSLTVVQCSFDDYPSAYPKVASWSQEEENRDCCLWDGIKCNEDNGHVIRLDLTSSCLY*********FQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTALSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVP*****
Disordered Region (DISOPRED)
RSALLQFKQSLTVVQCSFDDYPSAYPKVASWSQEEENRDCCLWDGIKCNEDNGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTALSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYALAN
Disordered Region (DISEMBL)
RSALLQFKQSLTVVQCSFDDYPSAYPKV**********DCCLWDGIKCNEDNGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTALSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYALAN
Disordered Region (DISPRO)
RSALLQFKQSLTVVQCSFDDYPSAYPKVASWSQEEENRDCCLWDGIKCNEDNGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTALSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVP*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
RSALLQFKQSLTVVQCSFDDYPSAYPKVASWSQEEENRDCCLWDGIKCNEDNGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTALSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYALAN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	177	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.807	0.168	0.360	3e-14
C0LGF4	591	LRR receptor-like serine/	no	no	0.779	0.233	0.329	3e-09
O82318	960	Probably inactive leucine	no	no	0.785	0.144	0.357	5e-09
Q9ZVR7	1008	Phytosulfokine receptor 1	no	no	0.621	0.109	0.410	6e-09
C0LGH8	664	Probable LRR receptor-lik	no	no	0.774	0.206	0.304	7e-09
O22938	890	Leucine-rich repeat recep	no	no	0.581	0.115	0.387	3e-08
Q9SYQ8	980	Receptor protein kinase C	no	no	0.751	0.135	0.328	3e-08
Q9FK10	601	Probable inactive recepto	no	no	0.723	0.212	0.310	4e-08
Q93Y06	669	Probable inactive recepto	no	no	0.604	0.159	0.352	6e-08
O48788	658	Probable inactive recepto	no	no	0.587	0.158	0.351	7e-08

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score = 77.8 bits (190), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/169 (36%), Positives = 89/169 (52%), Gaps = 26/169 (15%)

Query: 1   RSALLQFKQSLTVVQCSFDDYPSAYPKVASWSQEEENR-------DCCLWDGIKCNEDNG 53
           R ALL+F+                +P  ASW    + R       DCCLW+G+ CN+ +G
Sbjct: 39  RDALLEFR--------------GEFPINASWHIMNQWRGPWNKSTDCCLWNGVTCNDKSG 84

Query: 54  HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSN 111
            VI LD+ ++ L   + ++SSLF+L +L  L L+N +  + EIPS + NLS LT   L  
Sbjct: 85  QVISLDIPNTFLNNYLKTNSSLFKLQYLRHLDLTNCNL-YGEIPSSLGNLSHLTLVNLYF 143

Query: 112 PSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVL 160
             F G+IPA +  L+ L  L L+ NN        SL NL+ +L NL++ 
Sbjct: 144 NKFVGEIPASIGNLNQLRHLILA-NNVLTGEIPSSLGNLS-RLVNLELF 190

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|C0LGF4|FEI1_ARATH LRR receptor-like serine/threonine-protein kinase FEI 1 OS=Arabidopsis thaliana GN=FEI1 PE=1 SV=1

 Score = 61.6 bits (148), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 79/161 (49%), Gaps = 23/161 (14%)

Query: 3   ALLQFKQSLTVVQCSFDDYPSAYPKVASWSQEEENRDCCLWDGIKCNEDNGHVIRLDLTS 62
           ALL F+ ++T    SF         +  W  E+   D C W+G+ C+     VI L+LT 
Sbjct: 36  ALLSFRNAVTRSD-SF---------IHQWRPEDP--DPCNWNGVTCDAKTKRVITLNLTY 83

Query: 63  SCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPA 120
             + G +     + +L HL  L+L NN   +  IP+ + N + L    L +  F G IPA
Sbjct: 84  HKIMGPL--PPDIGKLDHLRLLMLHNNAL-YGAIPTALGNCTALEEIHLQSNYFTGPIPA 140

Query: 121 ELLELSDLESLDLSFNNFHLKLQGPSLANLAE--KLANLKV 159
           E+ +L  L+ LD+S N     L GP  A+L +  KL+N  V
Sbjct: 141 EMGDLPGLQKLDMSSNT----LSGPIPASLGQLKKLSNFNV 177

Involved in the signaling pathway that regulates cell wall function, including cellulose biosynthesis, likely via an 1-aminocyclopropane-1-carboxylic acid (ACC)-mediated signal (a precursor of ethylene).

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O82318|Y2579_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=1 SV=1

 Score = 60.5 bits (145), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 78/154 (50%), Gaps = 15/154 (9%)

Query: 28  VASWSQEEENRDCCLWDGIKCNEDNGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLS 87
           ++SWS    N D CLW G+ CN +   V+ LDL+   + G I ++++ F+L  L+ + LS
Sbjct: 49  LSSWSYSSTN-DVCLWSGVVCN-NISRVVSLDLSGKNMSGQILTAAT-FRLPFLQTINLS 105

Query: 88  NNHFNFSEIPSEIKNLS----RLTALSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQ 143
           NN+ +   IP +I   S    R   LSN +F G IP   L   +L +LDLS N F     
Sbjct: 106 NNNLS-GPIPHDIFTTSSPSLRYLNLSNNNFSGSIPRGFLP--NLYTLDLSNNMFT---- 158

Query: 144 GPSLANLAEKLANLKVLHLGQVNTASTVPYALAN 177
              + N     +NL+VL LG       VP  L N
Sbjct: 159 -GEIYNDIGVFSNLRVLDLGGNVLTGHVPGYLGN 191

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVR7|PSKR1_ARATH Phytosulfokine receptor 1 OS=Arabidopsis thaliana GN=PSKR1 PE=2 SV=4

 Score = 60.5 bits (145), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 48/117 (41%), Positives = 59/117 (50%), Gaps = 7/117 (5%)

Query: 26  PKVASWSQEEENRDCCLWDGIKCNEDN-GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWL 84
           PK   W     + DCC W GI CN +N G VIRL+L +  L G +  S SL +L  +  L
Sbjct: 48  PKPDGWINSSSSTDCCNWTGITCNSNNTGRVIRLELGNKKLSGKL--SESLGKLDEIRVL 105

Query: 85  VLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFNNFH 139
            LS N F    IP  I NL  L    LS+    G IP   + L  L+S DLS N F+
Sbjct: 106 NLSRN-FIKDSIPLSIFNLKNLQTLDLSSNDLSGGIPTS-INLPALQSFDLSSNKFN 160

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis, somatic embryogenesis, cellular proliferation and plant growth. Not involved in PSY perception.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGH8|Y1634_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g63430 OS=Arabidopsis thaliana GN=At1g63430 PE=1 SV=1

 Score = 60.1 bits (144), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 77/161 (47%), Gaps = 24/161 (14%)

Query: 3   ALLQFKQSLTVVQCSFDDYPSAYPKVASWSQEEENRDCCLWDGIKCNEDNGHVIRLDLTS 62
           AL +FK+++         Y      +++W+  + N D C W GI C+    HVI++++++
Sbjct: 30  ALRRFKEAI---------YEDPLLVMSNWN--DPNSDPCDWTGIYCSPSKDHVIKINISA 78

Query: 63  SCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPA 120
           S + G +  +  L Q+ +L+ L+L  N      IP EI NL  L    L N    G IPA
Sbjct: 79  SSIKGFL--APELGQITYLQELILHGNIL-IGTIPKEIGNLKNLKILDLGNNHLMGPIPA 135

Query: 121 ELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLH 161
           E+  LS +  ++L  N    KL          +L NLK L 
Sbjct: 136 EIGSLSGIMIINLQSNGLTGKLPA--------ELGNLKYLR 168

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O22938|Y2182_ARATH Leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 OS=Arabidopsis thaliana GN=At2g41820 PE=1 SV=1

 Score = 58.2 bits (139), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/111 (38%), Positives = 55/111 (49%), Gaps = 8/111 (7%)

Query: 28  VASWSQEEENRDCCLWDGIKCNEDNGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLS 87
           V  WS      D C W G+KC  +N  V  LDL+   L G++   S L  L HL+   LS
Sbjct: 40  VPGWSSN--GTDYCTWVGLKCGVNNSFVEMLDLSGLQLRGNVTLISDLRSLKHLD---LS 94

Query: 88  NNHFNFSEIPSEIKNLSRLT--ALSNPSFFGQIPAELLELSDLESLDLSFN 136
            N+FN   IP+   NLS L    LS   F G IP E  +L  L + ++S N
Sbjct: 95  GNNFN-GRIPTSFGNLSELEFLDLSLNRFVGAIPVEFGKLRGLRAFNISNN 144

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 0

EC: .

EC: 1

>sp|Q9SYQ8|CLV1_ARATH Receptor protein kinase CLAVATA1 OS=Arabidopsis thaliana GN=CLV1 PE=1 SV=3

 Score = 57.8 bits (138), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 76/146 (52%), Gaps = 13/146 (8%)

Query: 31  WSQEEENRDCCLWDGIKCNEDNGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNH 90
           W         C + G+ C++D   VI L+++ + L+G+I  S  +  L HL  L L+ N+
Sbjct: 49  WIHSSSPDAHCSFSGVSCDDD-ARVISLNVSFTPLFGTI--SPEIGMLTHLVNLTLAANN 105

Query: 91  FNFSEIPSEIKNLSRLTALS---NPSFFGQIPAELLE-LSDLESLDLSFNNFHLKLQGPS 146
           F   E+P E+K+L+ L  L+   N +  G  P E+L+ + DLE LD   NNF+ KL  P 
Sbjct: 106 FT-GELPLEMKSLTSLKVLNISNNGNLTGTFPGEILKAMVDLEVLDTYNNNFNGKLP-PE 163

Query: 147 LANLAEKLANLKVLHLGQVNTASTVP 172
           ++    +L  LK L  G    +  +P
Sbjct: 164 MS----ELKKLKYLSFGGNFFSGEIP 185

Involved in the detection of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristem maintenance. Acts with CLV3 as a ligand-receptor pair in a signal transduction pathway coordinating growth between adjacent meristematic regions and controlling the balance between meristem cell proliferation and differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FK10|Y5332_ARATH Probable inactive receptor kinase At5g53320 OS=Arabidopsis thaliana GN=At5g53320 PE=1 SV=1

 Score = 57.8 bits (138), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 80/161 (49%), Gaps = 33/161 (20%)

Query: 40  CCLWDGIKCNEDNGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHF-------- 91
           C  W G+ CN D+  V  L L ++ L G I   S + +L +L +L+LS+N+         
Sbjct: 52  CTKWTGVTCNSDHSSVDALHLAATGLRGDI-ELSIIARLSNLRFLILSSNNISGTFPTTL 110

Query: 92  -----------NFSE----IPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDLS 134
                      +F+E    +PS++ +  RL    LSN  F G IP+ + +L+ L SL+L+
Sbjct: 111 QALKNLTELKLDFNEFSGPLPSDLSSWERLQVLDLSNNRFNGSIPSSIGKLTLLHSLNLA 170

Query: 135 FNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYAL 175
           +N F  ++  P L      +  LK+L+L   N   TVP +L
Sbjct: 171 YNKFSGEI--PDL-----HIPGLKLLNLAHNNLTGTVPQSL 204

Arabidopsis thaliana (taxid: 3702)

>sp|Q93Y06|Y5720_ARATH Probable inactive receptor kinase At5g67200 OS=Arabidopsis thaliana GN=At5g67200 PE=1 SV=1

 Score = 57.0 bits (136), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/136 (35%), Positives = 68/136 (50%), Gaps = 29/136 (21%)

Query: 36  ENRDCCLWDGIKCNEDNGHVIRLDLTSSCLYGSINSSS---------------SLF---- 76
           E  D C W G+KC +  G ++RL L+   L G  +S++               SLF    
Sbjct: 57  ERYDYCQWRGVKCAQ--GRIVRLVLSGVGLRGYFSSATLSRLDQLRVLSLENNSLFGPIP 114

Query: 77  ---QLVHLEWLVLSNNHFNFSEIPSEIKNLSRLT--ALSNPSFFGQIPAELLELSDLESL 131
               LV+L+ L LS N F+    P  I +L RL   ++S+ +F G IP+E+  L  L SL
Sbjct: 115 DLSHLVNLKSLFLSRNQFS-GAFPPSILSLHRLMILSISHNNFSGSIPSEINALDRLTSL 173

Query: 132 DLSFNNFHLKLQGPSL 147
           +L FN F+  L  PSL
Sbjct: 174 NLDFNRFNGTL--PSL 187

Arabidopsis thaliana (taxid: 3702)

>sp|O48788|Y2267_ARATH Probable inactive receptor kinase At2g26730 OS=Arabidopsis thaliana GN=At2g26730 PE=1 SV=1

 Score = 57.0 bits (136), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 57/108 (52%), Gaps = 4/108 (3%)

Query: 33  QEEENRDCCLWDGIKCNEDNGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFN 92
           Q  E+   C W G++CN +   +  L L  + L G I  S SL +L  L  L L +N  +
Sbjct: 46  QWNESDSACNWVGVECNSNQSSIHSLRLPGTGLVGQI-PSGSLGRLTELRVLSLRSNRLS 104

Query: 93  FSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFNNF 138
             +IPS+  NL+ L +  L +  F G+ P    +L++L  LD+S NNF
Sbjct: 105 -GQIPSDFSNLTHLRSLYLQHNEFSGEFPTSFTQLNNLIRLDISSNNF 151

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	177
224140511	894	predicted protein [Populus trichocarpa]	0.971	0.192	0.581	3e-45
224140505	993	predicted protein [Populus trichocarpa]	0.971	0.173	0.587	3e-45
147866761	859	hypothetical protein VITISV_021527 [Viti	0.983	0.202	0.566	2e-44
224140509	961	predicted protein [Populus trichocarpa]	0.971	0.178	0.581	2e-44
359485824	973	PREDICTED: receptor-like protein 12-like	0.960	0.174	0.578	2e-43
359490156	886	PREDICTED: receptor-like protein 12-like	0.988	0.197	0.565	3e-43
359485822	993	PREDICTED: receptor-like protein 12-like	0.983	0.175	0.569	2e-42
224140517	979	predicted protein [Populus trichocarpa]	0.971	0.175	0.598	3e-42
224140513	947	predicted protein [Populus trichocarpa]	0.887	0.165	0.598	4e-42
147804670	1004	hypothetical protein VITISV_022039 [Viti	0.960	0.169	0.567	1e-41

>gi|224140511|ref|XP_002323626.1| predicted protein [Populus trichocarpa] gi|222868256|gb|EEF05387.1| predicted protein [Populus trichocarpa]

 Score =  186 bits (472), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 103/177 (58%), Positives = 127/177 (71%), Gaps = 5/177 (2%)

Query: 3   ALLQFKQSLTVVQCSFDDYPSAYPKVASWSQEEENRDCCLWDGIKCNEDNGHVIRLDLTS 62
           ALLQFK+SL V+  S    PSAYPKVASW  + E  +CC WDG++C+ D+GHVI LDL+S
Sbjct: 43  ALLQFKESL-VINESASYEPSAYPKVASWKADGERGNCCSWDGVECDGDSGHVIGLDLSS 101

Query: 63  SCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPA 120
           SCLYGSI+S+SSLF LV L  L L++N FN S+IPS I+NLSRL    L+   F GQIPA
Sbjct: 102 SCLYGSIDSNSSLFHLVQLRRLNLADNDFNNSKIPSGIRNLSRLVDLNLTMDGFSGQIPA 161

Query: 121 ELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYALAN 177
           E+LELS+L SLDL  N   LKLQ P L +L E L NL+VLHL  VN ++ +P  + N
Sbjct: 162 EILELSELVSLDLGLN--PLKLQNPGLQHLVEALTNLEVLHLSGVNISAKIPQIMTN 216

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140505|ref|XP_002323623.1| predicted protein [Populus trichocarpa] gi|222868253|gb|EEF05384.1| predicted protein [Populus trichocarpa]

 Score =  186 bits (472), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 104/177 (58%), Positives = 131/177 (74%), Gaps = 5/177 (2%)

Query: 3   ALLQFKQSLTVVQCSFDDYPSAYPKVASWSQEEENRDCCLWDGIKCNEDNGHVIRLDLTS 62
           ALLQ K+SL + + +  D PSAYPKVASW  + E+ DCC WDG++C+ D+GHVI LDL+S
Sbjct: 43  ALLQLKESLAINESASSD-PSAYPKVASWRVDGESGDCCSWDGVECDGDSGHVIGLDLSS 101

Query: 63  SCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRL--TALSNPSFFGQIPA 120
           SCL+GSINS+SSLF LV L  L LS N FN S++PSEI+NLSRL    LS  +F GQIPA
Sbjct: 102 SCLHGSINSNSSLFHLVQLRRLNLSGNDFNNSKMPSEIRNLSRLFDLNLSYSNFSGQIPA 161

Query: 121 ELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYALAN 177
           E+LELS L SLDL +N+  LKL+ P L +L E L NL+VLHL  V+ ++ VP  +AN
Sbjct: 162 EILELSKLVSLDLRWNS--LKLRKPGLQHLVEALTNLEVLHLSGVSISAEVPQIMAN 216

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147866761|emb|CAN80989.1| hypothetical protein VITISV_021527 [Vitis vinifera]

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 102/180 (56%), Positives = 127/180 (70%), Gaps = 6/180 (3%)

Query: 2   SALLQFKQSLTVVQCSFDDYPSAYPKVASWSQ--EEENRDCCLWDGIKCNEDNGHVIRLD 59
           SALLQFKQS  + + + DD PSAYPKV++W    E E  DCC WDG++C+++ GHVI L 
Sbjct: 42  SALLQFKQSFLIDEDASDD-PSAYPKVSTWKSHGEGEESDCCSWDGVECDKETGHVIGLH 100

Query: 60  LTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQ 117
           L SSCLYGSINSS++LF LVHL  L LS+N FN+S +P ++  LSRL +  LS   F GQ
Sbjct: 101 LASSCLYGSINSSNTLFSLVHLSTLDLSDNDFNYSXVPHKVGQLSRLRSLNLSGSKFSGQ 160

Query: 118 IPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYALAN 177
           IP+ELL LS L  LDLS N   L+LQ P L NL + L +LK LHL  VN +ST+P+ LAN
Sbjct: 161 IPSELLALSKLVFLDLSRNPM-LELQKPGLRNLVQNLTHLKTLHLNLVNISSTIPHVLAN 219

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140509|ref|XP_002323625.1| predicted protein [Populus trichocarpa] gi|222868255|gb|EEF05386.1| predicted protein [Populus trichocarpa]

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 103/177 (58%), Positives = 128/177 (72%), Gaps = 5/177 (2%)

Query: 3   ALLQFKQSLTVVQCSFDDYPSAYPKVASWSQEEENRDCCLWDGIKCNEDNGHVIRLDLTS 62
           ALLQFK+SL V+  S   Y SA PKVASW  + E+ DCC W+G++C+ D+GHVI LDL+S
Sbjct: 12  ALLQFKESL-VINESASSYSSACPKVASWKVDGESGDCCSWEGVECDRDSGHVIGLDLSS 70

Query: 63  SCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRL--TALSNPSFFGQIPA 120
           SCL+GSI+S+SSLF LV L  L L++N FN S+IPSEI+NL RL    LS   F GQIPA
Sbjct: 71  SCLHGSIDSNSSLFHLVQLRRLNLADNDFNNSKIPSEIRNLPRLFDLNLSITGFTGQIPA 130

Query: 121 ELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYALAN 177
           E+LELS L SLDL  N+  LKLQ P L +L E L NL+VLHL +VN ++ VP  + N
Sbjct: 131 EILELSKLVSLDLGLNS--LKLQKPGLQHLVEALTNLEVLHLSEVNISAKVPQVMTN 185

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485824|ref|XP_003633343.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  180 bits (457), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 103/178 (57%), Positives = 123/178 (69%), Gaps = 8/178 (4%)

Query: 2   SALLQFKQSLTVVQCSFDDYPSAYPKVASWSQ----EEENRDCCLWDGIKCNEDNGHVIR 57
           SALLQFKQS  + + +  + PSAYPKVA W      E E  DCC WDG++C+ + GHVI 
Sbjct: 42  SALLQFKQSFLIDEHASGN-PSAYPKVAMWKSHGEGEREGSDCCSWDGVECDRETGHVIG 100

Query: 58  LDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFF 115
           L L SSCLYGSINSSS+LF LVHL+ L LS+N FN+SEIP  +  LSRL +  LS   F 
Sbjct: 101 LHLASSCLYGSINSSSTLFSLVHLQRLDLSDNDFNYSEIPFGVGQLSRLRSLDLSFSGFS 160

Query: 116 GQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPY 173
           GQIP+ELL LS L  LDLS N   L+LQ P L NL + L +LK LHL QVN +ST+PY
Sbjct: 161 GQIPSELLALSKLVFLDLSANP-KLQLQKPGLRNLVQNLTHLKKLHLSQVNISSTIPY 217

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490156|ref|XP_003634044.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  179 bits (455), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 103/182 (56%), Positives = 126/182 (69%), Gaps = 7/182 (3%)

Query: 1   RSALLQFKQSLTVVQCSFDDYPSAYPKVASW---SQEEENRDCCLWDGIKCNEDNGHVIR 57
           RSALLQFKQS  +   +  D PSAYPKVA W    + EE  DCC WDG++C+ + GHVI 
Sbjct: 19  RSALLQFKQSFLIDGHASGD-PSAYPKVAMWKSHGEGEEGSDCCSWDGVECDRETGHVIG 77

Query: 58  LDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFF 115
           L L SSCLYGSINS+S+LF LVHL  L LS+N FN+S+IP  +  LSRL +  LS+  F 
Sbjct: 78  LHLASSCLYGSINSNSTLFSLVHLRRLDLSDNDFNYSQIPFGVGQLSRLRSLDLSSDRFA 137

Query: 116 GQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYAL 175
           GQIP+ELL LS L  L+LS N   L+LQ P L  L + L +LK LHL QVN +ST+P+ L
Sbjct: 138 GQIPSELLALSKLVFLNLSANPM-LQLQKPGLRYLVQNLTHLKELHLRQVNISSTIPHEL 196

Query: 176 AN 177
           AN
Sbjct: 197 AN 198

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485822|ref|XP_003633342.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  177 bits (448), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 102/179 (56%), Positives = 123/179 (68%), Gaps = 5/179 (2%)

Query: 2   SALLQFKQSLTVVQCSFDDYPSAYPKVASWSQEEENRDCCLWDGIKCNEDNGHVIRLDLT 61
           SALLQFKQS  + + + +D   AYPKVA+W    E  DCC WDG++C+ + GHVI L L 
Sbjct: 42  SALLQFKQSFLIDEYASED-SYAYPKVATWKSHGEGSDCCSWDGVECDRETGHVIGLHLA 100

Query: 62  SSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIP 119
           SSCLYGSINSSS+LF LVHL  L LS+N FN+SEIP  +  LSRL +  LS+  F GQIP
Sbjct: 101 SSCLYGSINSSSTLFSLVHLRRLDLSDNDFNYSEIPHGVSQLSRLRSLNLSDSQFSGQIP 160

Query: 120 AE-LLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYALAN 177
           +E LL LS L  LDLS N   L+LQ   L NL + L   K LHL QVN +ST+P+ALAN
Sbjct: 161 SEVLLALSKLVFLDLSGNPM-LQLQKHGLRNLVQNLTLFKKLHLSQVNISSTIPHALAN 218

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140517|ref|XP_002323629.1| predicted protein [Populus trichocarpa] gi|222868259|gb|EEF05390.1| predicted protein [Populus trichocarpa]

 Score =  176 bits (446), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 106/177 (59%), Positives = 130/177 (73%), Gaps = 5/177 (2%)

Query: 3   ALLQFKQSLTVVQCSFDDYPSAYPKVASWSQEEENRDCCLWDGIKCNEDNGHVIRLDLTS 62
           ALLQ K+SL + + +  D PSAYPKVASW  + E+ DCC WDG++C+ D+GHVI LDL+S
Sbjct: 43  ALLQIKESLVINESASSD-PSAYPKVASWRVDGESGDCCSWDGVECDGDSGHVIGLDLSS 101

Query: 63  SCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRL--TALSNPSFFGQIPA 120
           SCLYGSI+S+SSLF+LV L  L L++N FN SEIPSEI+NLSRL    LS   F GQIPA
Sbjct: 102 SCLYGSIDSNSSLFRLVLLRRLHLADNDFNKSEIPSEIRNLSRLFDLNLSMSGFSGQIPA 161

Query: 121 ELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYALAN 177
           E+LELS L SLDL  N+  LKLQ P L +L E L NL+VLHL  VN ++ VP  + N
Sbjct: 162 EILELSKLVSLDLGVNS--LKLQKPGLQHLVEALTNLEVLHLTGVNISAKVPQIMTN 216

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140513|ref|XP_002323627.1| predicted protein [Populus trichocarpa] gi|222868257|gb|EEF05388.1| predicted protein [Populus trichocarpa]

 Score =  176 bits (445), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 97/162 (59%), Positives = 123/162 (75%), Gaps = 5/162 (3%)

Query: 3   ALLQFKQSLTVVQCSFDDYPSAYPKVASWSQEEENRDCCLWDGIKCNEDNGHVIRLDLTS 62
           AL+QFK+SL + + +  D P+AYPKVASWS + E+ DCC WDG++C+ D+GHVI LDL+S
Sbjct: 43  ALMQFKESLVIHRSASYD-PAAYPKVASWSVDRESGDCCSWDGVECDGDSGHVIGLDLSS 101

Query: 63  SCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRL--TALSNPSFFGQIPA 120
           SCLYGSI+S+SSLF LV L  L L++N FN S+IPSEI+NLSRL    LS  SF GQIPA
Sbjct: 102 SCLYGSIDSNSSLFHLVQLRRLDLADNDFNNSKIPSEIRNLSRLFDLDLSYSSFSGQIPA 161

Query: 121 ELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHL 162
           E+LELS L SLDL +N+  LKLQ P L +L + L NL+ L +
Sbjct: 162 EILELSKLVSLDLGWNS--LKLQKPGLEHLVKALINLRFLSI 201

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147804670|emb|CAN66864.1| hypothetical protein VITISV_022039 [Vitis vinifera]

 Score =  174 bits (440), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 101/178 (56%), Positives = 120/178 (67%), Gaps = 8/178 (4%)

Query: 2   SALLQFKQSLTVVQCSFDDYPSAYPKVASWSQ----EEENRDCCLWDGIKCNEDNGHVIR 57
           SALLQFKQS  + + +  D PSAYPKVA W      E E  DCC WDG++C+ + GHVI 
Sbjct: 42  SALLQFKQSFLIDERASAD-PSAYPKVAMWKSHGEGEGEESDCCSWDGVECDRETGHVIG 100

Query: 58  LDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFF 115
           L L SSCLYGSINSSS+LF LVHL  L LS+N FN+S IP  +  LSRL +  LS   F 
Sbjct: 101 LHLASSCLYGSINSSSTLFSLVHLRRLDLSDNDFNYSVIPFGVGQLSRLRSLDLSYSRFS 160

Query: 116 GQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPY 173
           GQIP++LL LS L  LDLS N   L+LQ P L NL + L +LK LHL QVN  ST+P+
Sbjct: 161 GQIPSKLLALSKLVFLDLSANPM-LQLQKPGLRNLVQNLTHLKKLHLSQVNIFSTIPH 217

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	177
TAIR|locus:2055772	983	RLP19 "receptor like protein 1	0.920	0.165	0.379	3.3e-19
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.757	0.142	0.401	9.7e-18
TAIR|locus:2078112	868	RLP32 "receptor like protein 3	0.638	0.130	0.424	1.4e-17
TAIR|locus:2825762	994	RLP6 "AT1G45616" [Arabidopsis	0.649	0.115	0.417	5.9e-17
TAIR|locus:2119535	725	RLP48 "receptor like protein 4	0.774	0.188	0.353	3.3e-16
TAIR|locus:2205005	1019	RLP7 "AT1G47890" [Arabidopsis	0.559	0.097	0.480	4.3e-16
TAIR|locus:2078102	875	RLP33 "receptor like protein 3	0.745	0.150	0.391	1.9e-15
TAIR|locus:2119430	741	RLP47 "receptor like protein 4	0.598	0.143	0.405	5.2e-15
TAIR|locus:2090754	711	RLP43 "receptor like protein 4	0.661	0.164	0.416	6.2e-15
TAIR|locus:2119445	719	AT4G13820 [Arabidopsis thalian	0.943	0.232	0.307	3.6e-14

TAIR|locus:2055772 RLP19 "receptor like protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 3.3e-19, P = 3.3e-19
 Identities = 69/182 (37%), Positives = 91/182 (50%)

Query:     3 ALLQFKQSL-TVVQCSFDDYPSAYP-KVASWSQEEENRDCCLWDGIKCNEDNGHVIRLDL 60
             A+L+FK    T+ +  FD   S  P K  SW+    N DCC WDGIKC+   G VI LDL
Sbjct:    37 AILEFKNEFETLEESCFD---SNIPLKTESWTN---NSDCCYWDGIKCDAKFGDVIELDL 90

Query:    61 TSSCLYGSINSSSSLFQLVHLEWLV---LSNNHFNFSEIPSEIKNLSRLTAL--SNPSFF 115
             + SCL G +NS+SSLF+L  L +L    LSNN F   +IPS ++ LS LT L  S   F 
Sbjct:    91 SFSCLRGQLNSNSSLFRLPQLRFLTTLDLSNNDF-IGQIPSSLETLSNLTTLDLSRNHFS 149

Query:   116 GQIPAXXXXXXXXXXXXXXFNNFHLKLQGPSXXXXXXXXXXXXXXHLGQVNTASTVPYAL 175
             G+IP+               NNF  ++  PS              +L   N +  VP ++
Sbjct:   150 GRIPSSIGNLSHLIFVDFSHNNFSGQI--PSSLGYLSHLTSF---NLSYNNFSGRVPSSI 204

Query:   176 AN 177
              N
Sbjct:   205 GN 206

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 228 (85.3 bits), Expect = 9.7e-18, P = 9.7e-18
 Identities = 59/147 (40%), Positives = 76/147 (51%)

Query:     1 RSALLQFKQSLTVVQCSFDDY-------PSAYPKVASWSQEEENRDCCLWDGIKCNEDNG 53
             R ALL+ K    + + S +DY        S +P   SW     N DCC W+GI C+  +G
Sbjct:    43 RDALLELKNEFEIGKPSSNDYCYRNNSRVSPHPTTESW---RNNSDCCNWEGITCDTKSG 99

Query:    54 HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTAL--SN 111
              VI LDL+ S LYGS +S+SSLF+L +L  L L+ N  +  EIPS I NLS LT+L  S 
Sbjct:   100 EVIELDLSCSWLYGSFHSNSSLFRLQNLRVLDLTQNDLD-GEIPSSIGNLSHLTSLHLSY 158

Query:   112 PSFFGQIPAXXXXXXXXXXXXXXFNNF 138
               F G IP+               N F
Sbjct:   159 NQFLGLIPSSIENLSRLTSLHLSSNQF 185

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2078112 RLP32 "receptor like protein 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 1.4e-17, P = 1.4e-17
 Identities = 53/125 (42%), Positives = 74/125 (59%)

Query:     1 RSALLQFKQSLTVVQCSFDDYPSAYPKVASWSQEEENRDCCLWDGIKCNEDNGHVIRLDL 60
             R ALL+ K+   + +  FD     +P   SW+    N DCC WDGI CN+ +G V+ LDL
Sbjct:    44 RDALLELKKEFKIKKPCFD---GLHPTTESWAN---NSDCCYWDGITCNDKSGEVLELDL 97

Query:    61 TSSCLYGSINSSSSLFQLVHLEWLV---LSNNHFNFSEIPSEIKNLSRLTAL--SNPSFF 115
             + SCL    +S+SSLF +++L +L    LS N+F+  +IPS I+N S LT L  S   F 
Sbjct:    98 SRSCLQSRFHSNSSLFTVLNLRFLTTLDLSYNYFS-GQIPSCIENFSHLTTLDLSKNYFS 156

Query:   116 GQIPA 120
             G IP+
Sbjct:   157 GGIPS 161

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2825762 RLP6 "AT1G45616" [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 5.9e-17, P = 5.9e-17
 Identities = 53/127 (41%), Positives = 71/127 (55%)

Query:     1 RSALLQFKQSLTV-VQCSFDDYP------SAYPKVASWSQEEENRDCCLWDGIKCNEDNG 53
             R ALL+FK    +     F D        ++YPK  SW++   N DCC WDGI C+  +G
Sbjct:    41 RDALLEFKNEFKIWYPNGFLDIDGVLMDVTSYPKTKSWTK---NSDCCYWDGITCDTKSG 97

Query:    54 HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTAL--SN 111
              V  LDL+ SCL+G +  +SSLF+L HL+ + L+ N+F  S IP+E     RL  L  S 
Sbjct:    98 KVTGLDLSCSCLHGRLEPNSSLFRLQHLQSVNLAYNNFTNSPIPAEFSKFMRLERLNLSR 157

Query:   112 PSFFGQI 118
              SF G I
Sbjct:   158 SSFSGHI 164

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0016020 "membrane" evidence=IDA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2119535 RLP48 "receptor like protein 48" [Arabidopsis thaliana (taxid:3702)]

 Score = 212 (79.7 bits), Expect = 3.3e-16, P = 3.3e-16
 Identities = 52/147 (35%), Positives = 76/147 (51%)

Query:     1 RSALLQFKQSLTVVQCSFDDYPSAYPKVASWSQEEENRDCCLWDGIKCNEDNGHVIRLDL 60
             R ALL+FK    V +  FD +        +W  +    DCC W+ + C+   G V+ LDL
Sbjct:    39 RDALLEFKNEFYVQE--FDPHMKCEKATETWRNKT---DCCSWNRVSCDPKTGKVVELDL 93

Query:    61 TSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTALSNPS--FFGQI 118
              SSCL G + S+SSLF+L HL+ L LS+N+ +   +P  I NL  L +LS  +   FG+I
Sbjct:    94 MSSCLNGPLRSNSSLFRLQHLQSLELSSNNIS-GILPDSIGNLKYLRSLSFRTCHLFGKI 152

Query:   119 PAXXXXXXXXXXXXXXFNNFHLKLQGP 145
             P+              +N+F    +GP
Sbjct:   153 PSSLGSLSYLTHLDLSYNDF--TSEGP 177

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2205005 RLP7 "AT1G47890" [Arabidopsis thaliana (taxid:3702)]

 Score = 213 (80.0 bits), Expect = 4.3e-16, P = 4.3e-16
 Identities = 49/102 (48%), Positives = 65/102 (63%)

Query:    20 DYPSAYPKVASWSQEEENRDCCLWDGIKCNEDNGHVIRLDLTSSCLYGSINSSSSLFQLV 79
             D+ + +  V S S   ++ DCC WDGI C+  +G+VI LDL+S  LYG + S+SSLF+L 
Sbjct:    84 DFKNEFGMVDSKSWVNKS-DCCSWDGITCDAKSGNVIGLDLSSIFLYGQLKSNSSLFKLR 142

Query:    80 HLEWLVLSNNHFNFSEIPSEIKNLSRLTAL--SNPSFFGQIP 119
             HL  L L+NN+FN S IP+E   L+ L  L  S  S  GQIP
Sbjct:   143 HLRDLNLANNNFNNSPIPAEFDKLTGLERLDLSQSSLSGQIP 184

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2078102 RLP33 "receptor like protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 1.9e-15, P = 1.9e-15
 Identities = 56/143 (39%), Positives = 71/143 (49%)

Query:     1 RSALLQFKQSLTVVQCSFDDYPSAYPKVASWSQEEENRDCCLWDGIKCNEDNGHVIRLDL 60
             R ALL+FK    + +  F   PS   K  SW   E   DCC WDGI C+   G VI +DL
Sbjct:    35 RDALLEFKNEFKIKKPCFG-CPSPL-KTKSW---ENGSDCCHWDGITCDAKTGEVIEIDL 89

Query:    61 TSSCLYGSINSSSSLFQLVHLEWLV---LSNNHFNFSEIPSEIKNLSRLTAL--SNPSFF 115
               SCL+G  +S+S+L  L +  +L    LS NH +  +I S I NLS LT L  S  +F 
Sbjct:    90 MCSCLHGWFHSNSNLSMLQNFHFLTTLDLSYNHLS-GQISSSIGNLSHLTTLDLSGNNFS 148

Query:   116 GQIPAXXXXXXXXXXXXXXFNNF 138
             G IP+               NNF
Sbjct:   149 GWIPSSLGNLFHLTSLHLYDNNF 171

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006457 "protein folding" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2119430 RLP47 "receptor like protein 47" [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 5.2e-15, P = 5.2e-15
 Identities = 45/111 (40%), Positives = 61/111 (54%)

Query:    37 NRDCCLWDGIKCNEDNGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEI 96
             N DCC WDG+ C+   G V+ LDL  S L G + S+SSLF+L HL+ LVL +NH +   +
Sbjct:     8 NTDCCSWDGVSCDPKTGVVVELDLQYSHLNGPLRSNSSLFRLQHLQKLVLGSNHLS-GIL 66

Query:    97 PSEIKNLSRLTALS--NPSFFGQIPAXXXXXXXXXXXXXXFNNFHLKLQGP 145
             P  I NL RL  L   N + FG+IP+              +N+F    +GP
Sbjct:    67 PDSIGNLKRLKVLVLVNCNLFGKIPSSLGNLSYLTHLDLSYNDF--TSEGP 115

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2090754 RLP43 "receptor like protein 43" [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 6.2e-15, P = 6.2e-15
 Identities = 52/125 (41%), Positives = 70/125 (56%)

Query:     1 RSALLQFKQSLTVVQ-CSFDD-YP-SAYPKVASWSQEEENRDCCLWDGIKCNEDNGHVIR 57
             + ALL+FK    + + C +   Y    +PK  SW     N DCC W+G+ CN  +G VI 
Sbjct:    42 KDALLKFKTEFEIGKPCRYCTVYCIEPHPKTESWGNN--NSDCCNWEGVTCNAKSGEVIE 99

Query:    58 LDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTAL--SNPSFF 115
             LDL+ S L+G  +S+SS+  L  L  L LS N F   +I S I+NLS LT L  S   F 
Sbjct:   100 LDLSCSYLHGRFHSNSSIRNLHFLTTLDLSFNDFK-GQIMSSIENLSHLTYLDLSFNHFS 158

Query:   116 GQIPA 120
             GQ+P+
Sbjct:   159 GQVPS 163

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2119445 AT4G13820 [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 3.6e-14, P = 3.6e-14
 Identities = 55/179 (30%), Positives = 80/179 (44%)

Query:     1 RSALLQFKQSLTVVQCSFDDYPSAYPKVASWSQEEENRDCCLWDGIKCNEDNGHVIRLDL 60
             ++ALL+FK    V + + +       K   W     N DCC WDGI C+   G V+ LDL
Sbjct:    34 KNALLEFKNEFYVHEFNSNGIVGV-KKTEKW---RNNTDCCSWDGISCDPKTGKVVELDL 89

Query:    61 TSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLS--RLTALSNPSFFGQI 118
              +S L G +   SSLF+L HL  L L +N+F+   +P  I +L   R+ +L + + FG+I
Sbjct:    90 MNSFLNGPLRYDSSLFRLQHLHNLDLGSNNFS-GILPDSIGSLKYLRVLSLGDCNLFGKI 148

Query:   119 PAXXXXXXXXXXXXXXFNNFHLKLQGPSXXXXXXXXXXXXXXHLGQVNTASTVPYALAN 177
             P+               N+F  +L  P               HLG    +   P  L N
Sbjct:   149 PSSLGNLTYLTNLDLSVNDFTGEL--PDSMGHLNKLTEL---HLGSAKLSGNFPSMLLN 202

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000303 "response to superoxide" evidence=RCA

GO:0008219 "cell death" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	177
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.002
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.004
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 62.9 bits (153), Expect = 6e-12
 Identities = 58/177 (32%), Positives = 90/177 (50%), Gaps = 27/177 (15%)

Query: 4   LLQFKQSLTVVQCSFDDYPSAYPKVASWSQEEENRDCCLWDGIKCNEDNGHVIRLDLTSS 63
           LL FK S+        + P  Y  +++W+    + D CLW GI CN ++  V+ +DL+  
Sbjct: 34  LLSFKSSI--------NDPLKY--LSNWNS---SADVCLWQGITCN-NSSRVVSIDLSGK 79

Query: 64  CLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLS---RLTALSNPSFFGQIPA 120
            + G I  SS++F+L +++ + LSNN  +   IP +I   S   R   LSN +F G IP 
Sbjct: 80  NISGKI--SSAIFRLPYIQTINLSNNQLSG-PIPDDIFTTSSSLRYLNLSNNNFTGSIPR 136

Query: 121 ELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYALAN 177
               + +LE+LDLS N    +     + N     ++LKVL LG       +P +L N
Sbjct: 137 G--SIPNLETLDLSNNMLSGE-----IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTN 186

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 42.5 bits (100), Expect = 4e-05
 Identities = 42/120 (35%), Positives = 62/120 (51%), Gaps = 10/120 (8%)

Query: 58  LDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTAL--SNPSFF 115
           LDL  + L G I   SSL  L +L++L L  N  +   IP  I +L +L +L  S+ S  
Sbjct: 241 LDLVYNNLTGPI--PSSLGNLKNLQYLFLYQNKLS-GPIPPSIFSLQKLISLDLSDNSLS 297

Query: 116 GQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYAL 175
           G+IP  +++L +LE L L  NNF  K+   +L +L      L+VL L     +  +P  L
Sbjct: 298 GEIPELVIQLQNLEILHLFSNNFTGKIPV-ALTSLPR----LQVLQLWSNKFSGEIPKNL 352

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.5 bits (100), Expect = 4e-05
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 7/82 (8%)

Query: 96  IPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEK 153
           IP++I  L  L +  LS  S  G IP  L  ++ LE LDLS+N+F+    G    +L + 
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN----GSIPESLGQ- 488

Query: 154 LANLKVLHLGQVNTASTVPYAL 175
           L +L++L+L   + +  VP AL
Sbjct: 489 LTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 42.5 bits (100), Expect = 5e-05
 Identities = 41/118 (34%), Positives = 59/118 (50%), Gaps = 12/118 (10%)

Query: 58  LDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEI---KNLSRLTALSNPSF 114
           LDL  + L G I   +SL  L  LE+L L++N     +IP E+   K+L +   L   + 
Sbjct: 169 LDLGGNVLVGKI--PNSLTNLTSLEFLTLASNQL-VGQIPRELGQMKSL-KWIYLGYNNL 224

Query: 115 FGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVP 172
            G+IP E+  L+ L  LDL +NN    +   SL N    L NL+ L L Q   +  +P
Sbjct: 225 SGEIPYEIGGLTSLNHLDLVYNNLTGPIP-SSLGN----LKNLQYLFLYQNKLSGPIP 277

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 7/91 (7%)

Query: 55  VIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTAL---SN 111
           +I LDL+ + L G I     + QL +LE L L +N+F   +IP  + +L RL  L   SN
Sbjct: 286 LISLDLSDNSLSGEI--PELVIQLQNLEILHLFSNNFT-GKIPVALTSLPRLQVLQLWSN 342

Query: 112 PSFFGQIPAELLELSDLESLDLSFNNFHLKL 142
             F G+IP  L + ++L  LDLS NN   ++
Sbjct: 343 -KFSGEIPKNLGKHNNLTVLDLSTNNLTGEI 372

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 46/145 (31%), Positives = 62/145 (42%), Gaps = 32/145 (22%)

Query: 58  LDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTALS--NPSFF 115
           L L S+ L G I     L Q+  L+W+ L  N+ +  EIP EI  L+ L  L     +  
Sbjct: 193 LTLASNQLVGQI--PRELGQMKSLKWIYLGYNNLS-GEIPYEIGGLTSLNHLDLVYNNLT 249

Query: 116 GQIPAELLELSDLESLDLSFNNFHLKLQGP------SLANLAE----------------- 152
           G IP+ L  L +L+ L L  N    KL GP      SL  L                   
Sbjct: 250 GPIPSSLGNLKNLQYLFLYQN----KLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI 305

Query: 153 KLANLKVLHLGQVNTASTVPYALAN 177
           +L NL++LHL   N    +P AL +
Sbjct: 306 QLQNLEILHLFSNNFTGKIPVALTS 330

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 37.9 bits (88), Expect = 0.002
 Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 11/129 (8%)

Query: 51  DNGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTAL- 109
            +G++ +L L S+ L G I  S    +   L  + L +N F+  E+PSE   L  +  L 
Sbjct: 378 SSGNLFKLILFSNSLEGEIPKSLGACR--SLRRVRLQDNSFS-GELPSEFTKLPLVYFLD 434

Query: 110 -SNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTA 168
            SN +  G+I +   ++  L+ L L+ N F   L     +        L+ L L +   +
Sbjct: 435 ISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSK------RLENLDLSRNQFS 488

Query: 169 STVPYALAN 177
             VP  L +
Sbjct: 489 GAVPRKLGS 497

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 36.7 bits (85), Expect = 0.004
 Identities = 39/112 (34%), Positives = 51/112 (45%), Gaps = 15/112 (13%)

Query: 57  RLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTAL--SNPSF 114
            LDL+ +   G++     L  L  L  L LS N  +  EIP E+ +  +L +L  S+   
Sbjct: 479 NLDLSRNQFSGAV--PRKLGSLSELMQLKLSENKLS-GEIPDELSSCKKLVSLDLSHNQL 535

Query: 115 FGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVN 166
            GQIPA   E+  L  LDLS N    +L G    NL        V  L QVN
Sbjct: 536 SGQIPASFSEMPVLSQLDLSQN----QLSGEIPKNLG------NVESLVQVN 577

Length = 968

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 33.5 bits (77), Expect = 0.004
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 11/49 (22%)

Query: 1  RSALLQFKQSLTVVQCSFDDYPSAYPKVASWSQEEENRDCCLWDGIKCN 49
          R ALL FK SL        D   A   ++SW+    + D C W G+ C+
Sbjct: 5  RDALLAFKSSLN------GDPSGA---LSSWNPS--SSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	177
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.85
PLN03150	623	hypothetical protein; Provisional	99.73
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.53
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.44
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.33
PLN03150	623	hypothetical protein; Provisional	99.33
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.16
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.08
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.05
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.04
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.94
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.94
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.86
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.85
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.74
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.73
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.73
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.73
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.73
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.67
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.64
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.63
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.55
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.54
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.54
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.53
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.49
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.47
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.44
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.42
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.36
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.28
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.28
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.27
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.19
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.18
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.05
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.94
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.93
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.9
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.8
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.79
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.72
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.66
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.5
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.46
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.45
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.4
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.38
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.3
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.23
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.18
PRK15386	426	type III secretion protein GogB; Provisional	96.82
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.82
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	96.7
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.5
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.28
KOG2982	418	consensus Uncharacterized conserved protein [Funct	95.86
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.8
KOG2982	418	consensus Uncharacterized conserved protein [Funct	95.63
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.45
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.37
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.2
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.87
smart00370	26	LRR Leucine-rich repeats, outliers.	94.87
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	94.65
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	94.28
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	93.94
PRK15386	426	type III secretion protein GogB; Provisional	93.92
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.85
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	93.13
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	93.08
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	92.42
KOG3864	221	consensus Uncharacterized conserved protein [Funct	91.64
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.61
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	88.4
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	88.05
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	87.43
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	84.66

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.85  E-value=5.1e-21  Score=170.72  Aligned_cols=153  Identities=34%  Similarity=0.562  Sum_probs=102.4

Q ss_pred             ChHHHHHhhhCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccceEEEcCCCCcEEEEEccCCccccccCCCcccccCcC
Q 041168            1 RSALLQFKQSLTVVQCSFDDYPSAYPKVASWSQEEENRDCCLWDGIKCNEDNGHVIRLDLTSSCLYGSINSSSSLFQLVH   80 (177)
Q Consensus         1 ~~~l~~~k~~~~~~~~~~~~~~~~~~~l~~W~~~~~~~~~C~w~gv~c~~~~~~l~~L~l~~n~l~~~~~~~~~l~~l~~   80 (177)
                      +.||++||+++.++..          .+.+|+   ...+||.|.||.|... ++|+.|++++|.+.+.++.  .+..++.
T Consensus        31 ~~~l~~~~~~~~~~~~----------~~~~w~---~~~~~c~w~gv~c~~~-~~v~~L~L~~~~i~~~~~~--~~~~l~~   94 (968)
T PLN00113         31 LELLLSFKSSINDPLK----------YLSNWN---SSADVCLWQGITCNNS-SRVVSIDLSGKNISGKISS--AIFRLPY   94 (968)
T ss_pred             HHHHHHHHHhCCCCcc----------cCCCCC---CCCCCCcCcceecCCC-CcEEEEEecCCCccccCCh--HHhCCCC
Confidence            3689999999975543          678997   6678999999999753 6899999998888877776  7777888


Q ss_pred             CcEEEccCCCCCCCCCCcccc-CCccccc--cccccCC----------------------CCCChhhhCCCCCCEEeCCC
Q 041168           81 LEWLVLSNNHFNFSEIPSEIK-NLSRLTA--LSNPSFF----------------------GQIPAELLELSDLESLDLSF  135 (177)
Q Consensus        81 L~~L~Ls~n~l~~~~~p~~~~-~l~~L~~--ls~n~l~----------------------~~~p~~~~~l~~L~~L~Ls~  135 (177)
                      |+.|+|++|.+.+. +|..+. .+++|++  +++|++.                      +.+|..++.+++|++|++++
T Consensus        95 L~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~  173 (968)
T PLN00113         95 IQTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGG  173 (968)
T ss_pred             CCEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECcc
Confidence            88888888877765 665433 4555555  4444443                      34455555556666666665


Q ss_pred             CcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCccc
Q 041168          136 NNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYAL  175 (177)
Q Consensus       136 N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~l  175 (177)
                      |  .+   .+.+|..+.++++|++|++++|.+.+.+|..+
T Consensus       174 n--~l---~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l  208 (968)
T PLN00113        174 N--VL---VGKIPNSLTNLTSLEFLTLASNQLVGQIPREL  208 (968)
T ss_pred             C--cc---cccCChhhhhCcCCCeeeccCCCCcCcCChHH
Confidence            5  33   34455555555555555555555555555443

>PLN03150 hypothetical protein; Provisional

Probab=99.73  E-value=6e-17  Score=138.63  Aligned_cols=151  Identities=26%  Similarity=0.351  Sum_probs=123.6

Q ss_pred             hHHHHHhhhCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccceEEEcCC--C--CcEEEEEccCCccccccCCCccccc
Q 041168            2 SALLQFKQSLTVVQCSFDDYPSAYPKVASWSQEEENRDCCLWDGIKCNED--N--GHVIRLDLTSSCLYGSINSSSSLFQ   77 (177)
Q Consensus         2 ~~l~~~k~~~~~~~~~~~~~~~~~~~l~~W~~~~~~~~~C~w~gv~c~~~--~--~~l~~L~l~~n~l~~~~~~~~~l~~   77 (177)
                      +||+.+|..+..+.            ..+|.+++..+..|.|.||.|...  .  ..++.|+|++|.+.+.+|.  .+..
T Consensus       375 ~aL~~~k~~~~~~~------------~~~W~g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~--~i~~  440 (623)
T PLN03150        375 SALQTLKSSLGLPL------------RFGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPN--DISK  440 (623)
T ss_pred             HHHHHHHHhcCCcc------------cCCCCCCCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCH--HHhC
Confidence            57889999886432            247972111111237999999522  1  2589999999999999999  9999


Q ss_pred             CcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhhcC-
Q 041168           78 LVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKL-  154 (177)
Q Consensus        78 l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l-  154 (177)
                      +++|+.|+|++|.+.+. +|..+..+++|+.  |++|++.+.+|..++.+++|++|+|++|  .+   .+.+|..+..+ 
T Consensus       441 L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N--~l---~g~iP~~l~~~~  514 (623)
T PLN03150        441 LRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN--SL---SGRVPAALGGRL  514 (623)
T ss_pred             CCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCC--cc---cccCChHHhhcc
Confidence            99999999999999988 9999999999999  9999999999999999999999999999  56   78899888764 


Q ss_pred             CCCCEEEeecccCCCCCC
Q 041168          155 ANLKVLHLGQVNTASTVP  172 (177)
Q Consensus       155 ~~L~~L~Ls~N~l~g~~p  172 (177)
                      .++..+++.+|...+..|
T Consensus       515 ~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        515 LHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             ccCceEEecCCccccCCC
Confidence            577889999997665454

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.53  E-value=1.8e-14  Score=128.91  Aligned_cols=114  Identities=29%  Similarity=0.402  Sum_probs=63.3

Q ss_pred             cEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEE
Q 041168           54 HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESL  131 (177)
Q Consensus        54 ~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L  131 (177)
                      ++++|++++|.+.+.+|.  .+..+++|++|++++|.+.+. +|..+..+++|++  +++|.+.+.+|..++.+++|++|
T Consensus       141 ~L~~L~Ls~n~~~~~~p~--~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  217 (968)
T PLN00113        141 NLETLDLSNNMLSGEIPN--DIGSFSSLKVLDLGGNVLVGK-IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWI  217 (968)
T ss_pred             CCCEEECcCCcccccCCh--HHhcCCCCCEEECccCccccc-CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEE
Confidence            444555555555444554  555566666666666665544 5555555666665  55555555555555555556666


Q ss_pred             eCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCccc
Q 041168          132 DLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYAL  175 (177)
Q Consensus       132 ~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~l  175 (177)
                      ++++|  .+   .+.+|..+..+++|++|++++|.+++.+|..+
T Consensus       218 ~L~~n--~l---~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l  256 (968)
T PLN00113        218 YLGYN--NL---SGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL  256 (968)
T ss_pred             ECcCC--cc---CCcCChhHhcCCCCCEEECcCceeccccChhH
Confidence            55555  33   34455555555555555555555555555443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.44  E-value=1.8e-15  Score=108.32  Aligned_cols=117  Identities=27%  Similarity=0.410  Sum_probs=93.3

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      ++++.|.+++|.++ .+|+  .+..+.+|+.|++.+|++. . +|..++.++.|+.  ++-|++. .+|..|+.++.|++
T Consensus        33 s~ITrLtLSHNKl~-~vpp--nia~l~nlevln~~nnqie-~-lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev  106 (264)
T KOG0617|consen   33 SNITRLTLSHNKLT-VVPP--NIAELKNLEVLNLSNNQIE-E-LPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV  106 (264)
T ss_pred             hhhhhhhcccCcee-ecCC--cHHHhhhhhhhhcccchhh-h-cChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence            67899999999998 6777  8999999999999999998 4 8999999999999  8889887 88999999999999


Q ss_pred             EeCCCCcCCccc-C------------------CCchhHHhhcCCCCCEEEeecccCCCCCCcccc
Q 041168          131 LDLSFNNFHLKL-Q------------------GPSLANLAEKLANLKVLHLGQVNTASTVPYALA  176 (177)
Q Consensus       131 L~Ls~N~~~l~~-~------------------~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~l~  176 (177)
                      |||++|++.-.. +                  ...+|..++.+++|+.|.+..|.+. .+|.++|
T Consensus       107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig  170 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIG  170 (264)
T ss_pred             hhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHHH
Confidence            999998643200 0                  1234556666777777777777665 4666654

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.33  E-value=8.5e-14  Score=99.75  Aligned_cols=114  Identities=26%  Similarity=0.341  Sum_probs=86.1

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      ++++.|++..|++. .+|.  .|+.++.|+.|||.+|.+....+|..|..++.|+.  |+.|.|. .+|+.++.+++|+.
T Consensus        79 ~klr~lnvgmnrl~-~lpr--gfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqi  154 (264)
T KOG0617|consen   79 PKLRILNVGMNRLN-ILPR--GFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQI  154 (264)
T ss_pred             hhhhheecchhhhh-cCcc--ccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeE
Confidence            34555555555555 4555  66677777777777777664435666666666666  7777775 78999999999999


Q ss_pred             EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCccccC
Q 041168          131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYALAN  177 (177)
Q Consensus       131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~  177 (177)
                      |.+..|.  +    -.+|.+++.++.|++|++.+|.++ .+|.++++
T Consensus       155 l~lrdnd--l----l~lpkeig~lt~lrelhiqgnrl~-vlppel~~  194 (264)
T KOG0617|consen  155 LSLRDND--L----LSLPKEIGDLTRLRELHIQGNRLT-VLPPELAN  194 (264)
T ss_pred             EeeccCc--h----hhCcHHHHHHHHHHHHhcccceee-ecChhhhh
Confidence            9999994  4    468999999999999999999998 58888764

>PLN03150 hypothetical protein; Provisional

Probab=99.33  E-value=3.1e-12  Score=109.82  Aligned_cols=91  Identities=34%  Similarity=0.500  Sum_probs=85.3

Q ss_pred             CCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhhcCCCC
Q 041168           80 HLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANL  157 (177)
Q Consensus        80 ~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L  157 (177)
                      .++.|+|++|.+.+. +|..+..+++|+.  |++|.+.+.+|..++.+++|+.|+|++|  .+   .+.+|..++.+++|
T Consensus       419 ~v~~L~L~~n~L~g~-ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N--~l---sg~iP~~l~~L~~L  492 (623)
T PLN03150        419 FIDGLGLDNQGLRGF-IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYN--SF---NGSIPESLGQLTSL  492 (623)
T ss_pred             EEEEEECCCCCcccc-CCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCC--CC---CCCCchHHhcCCCC
Confidence            478899999999988 9999999999999  9999999999999999999999999999  56   78899999999999


Q ss_pred             CEEEeecccCCCCCCcccc
Q 041168          158 KVLHLGQVNTASTVPYALA  176 (177)
Q Consensus       158 ~~L~Ls~N~l~g~~p~~l~  176 (177)
                      ++|+|++|.++|.+|..++
T Consensus       493 ~~L~Ls~N~l~g~iP~~l~  511 (623)
T PLN03150        493 RILNLNGNSLSGRVPAALG  511 (623)
T ss_pred             CEEECcCCcccccCChHHh
Confidence            9999999999999998764

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.16  E-value=1.6e-11  Score=98.06  Aligned_cols=108  Identities=28%  Similarity=0.353  Sum_probs=91.9

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      .+++.|++++|-+. .+|.  ++..+..|+.|+++.|+|. . +|..+..+..++.  .++|++...-|..+..|.+|.+
T Consensus       435 ~kLt~L~L~NN~Ln-~LP~--e~~~lv~Lq~LnlS~NrFr-~-lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~t  509 (565)
T KOG0472|consen  435 QKLTFLDLSNNLLN-DLPE--EMGSLVRLQTLNLSFNRFR-M-LPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTT  509 (565)
T ss_pred             hcceeeecccchhh-hcch--hhhhhhhhheecccccccc-c-chHHHhhHHHHHHHHhccccccccChHHhhhhhhcce
Confidence            57788999988776 6788  8889999999999999998 5 8998888888888  4558887555556999999999


Q ss_pred             EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCc
Q 041168          131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPY  173 (177)
Q Consensus       131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~  173 (177)
                      |||.+|  .+    ..+|..+++|++|++|++.+|+|.  .|.
T Consensus       510 LDL~nN--dl----q~IPp~LgnmtnL~hLeL~gNpfr--~Pr  544 (565)
T KOG0472|consen  510 LDLQNN--DL----QQIPPILGNMTNLRHLELDGNPFR--QPR  544 (565)
T ss_pred             eccCCC--ch----hhCChhhccccceeEEEecCCccC--CCH
Confidence            999999  44    568999999999999999999998  454

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.08  E-value=1.2e-11  Score=98.68  Aligned_cols=110  Identities=32%  Similarity=0.396  Sum_probs=82.0

Q ss_pred             cEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhh-CCCCCCE
Q 041168           54 HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELL-ELSDLES  130 (177)
Q Consensus        54 ~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~-~l~~L~~  130 (177)
                      +++.||.-.|-+. .+|+  .++.+..|..|+|.+|++. . +| .|..+..|..  ++.|.+. .+|.+.. ++++|.+
T Consensus       184 ~L~~ld~~~N~L~-tlP~--~lg~l~~L~~LyL~~Nki~-~-lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~v  256 (565)
T KOG0472|consen  184 RLKHLDCNSNLLE-TLPP--ELGGLESLELLYLRRNKIR-F-LP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLV  256 (565)
T ss_pred             HHHhcccchhhhh-cCCh--hhcchhhhHHHHhhhcccc-c-CC-CCCccHHHHHHHhcccHHH-hhHHHHhccccccee
Confidence            3455555555444 5566  6777777777777777776 2 55 5666777766  6667665 5666655 8899999


Q ss_pred             EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCccccC
Q 041168          131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYALAN  177 (177)
Q Consensus       131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~  177 (177)
                      |||..|  ++    +.+|+++.-+++|++||+|+|.|++ +|.++||
T Consensus       257 LDLRdN--kl----ke~Pde~clLrsL~rLDlSNN~is~-Lp~sLgn  296 (565)
T KOG0472|consen  257 LDLRDN--KL----KEVPDEICLLRSLERLDLSNNDISS-LPYSLGN  296 (565)
T ss_pred             eecccc--cc----ccCchHHHHhhhhhhhcccCCcccc-CCccccc
Confidence            999999  44    6799999999999999999999995 8888875

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.05  E-value=1.3e-11  Score=102.45  Aligned_cols=80  Identities=29%  Similarity=0.235  Sum_probs=40.4

Q ss_pred             cEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEE
Q 041168           54 HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESL  131 (177)
Q Consensus        54 ~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L  131 (177)
                      +++.|+|+.|+++..-..  .+.+++.|+.|++++|.|... .++.+...++|+.  |++|++...-+..|..+..|++|
T Consensus       270 kme~l~L~~N~l~~vn~g--~lfgLt~L~~L~lS~NaI~ri-h~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~L  346 (873)
T KOG4194|consen  270 KMEHLNLETNRLQAVNEG--WLFGLTSLEQLDLSYNAIQRI-HIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEEL  346 (873)
T ss_pred             ccceeecccchhhhhhcc--cccccchhhhhccchhhhhee-ecchhhhcccceeEeccccccccCChhHHHHHHHhhhh
Confidence            455555555555543333  455555555555555555544 4444555555555  55555553333444444444444


Q ss_pred             eCCCC
Q 041168          132 DLSFN  136 (177)
Q Consensus       132 ~Ls~N  136 (177)
                      +|+.|
T Consensus       347 nLs~N  351 (873)
T KOG4194|consen  347 NLSHN  351 (873)
T ss_pred             ccccc
Confidence            44444

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.04  E-value=2e-10  Score=83.45  Aligned_cols=105  Identities=30%  Similarity=0.292  Sum_probs=38.8

Q ss_pred             CcEEEEEccCCccccccCCCcccc-cCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhh-hCCCCC
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLF-QLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAEL-LELSDL  128 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~-~~l~~L  128 (177)
                      .+++.|++++|.|+. +.   .+. .+.+|+.|++++|.|+.  +. .+..++.|++  +++|++. .+.+.+ ..+++|
T Consensus        19 ~~~~~L~L~~n~I~~-Ie---~L~~~l~~L~~L~Ls~N~I~~--l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L   90 (175)
T PF14580_consen   19 VKLRELNLRGNQIST-IE---NLGATLDKLEVLDLSNNQITK--LE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNL   90 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S----T-T----TT--EEE--SS----S-CHHHHHH-TT-
T ss_pred             ccccccccccccccc-cc---chhhhhcCCCEEECCCCCCcc--cc-CccChhhhhhcccCCCCCC-ccccchHHhCCcC
Confidence            357889999998873 33   344 57789999999999984  43 5777888888  8999987 455545 468899


Q ss_pred             CEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCC
Q 041168          129 ESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAS  169 (177)
Q Consensus       129 ~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g  169 (177)
                      ++|++++|+|.-   ... -..+..+++|+.|+|.+|+++.
T Consensus        91 ~~L~L~~N~I~~---l~~-l~~L~~l~~L~~L~L~~NPv~~  127 (175)
T PF14580_consen   91 QELYLSNNKISD---LNE-LEPLSSLPKLRVLSLEGNPVCE  127 (175)
T ss_dssp             -EEE-TTS---S---CCC-CGGGGG-TT--EEE-TT-GGGG
T ss_pred             CEEECcCCcCCC---hHH-hHHHHcCCCcceeeccCCcccc
Confidence            999999995532   122 2456788999999999998863

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.94  E-value=1.3e-10  Score=100.51  Aligned_cols=103  Identities=34%  Similarity=0.453  Sum_probs=84.1

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      .++++|+|++|++.. +|.. .+.++..|+.|+||+|+++ . +|..+..+..|++  ..+|.+. ..| .+..++.|+.
T Consensus       383 ~hLKVLhLsyNrL~~-fpas-~~~kle~LeeL~LSGNkL~-~-Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~  456 (1081)
T KOG0618|consen  383 KHLKVLHLSYNRLNS-FPAS-KLRKLEELEELNLSGNKLT-T-LPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKV  456 (1081)
T ss_pred             cceeeeeeccccccc-CCHH-HHhchHHhHHHhcccchhh-h-hhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceE
Confidence            689999999999884 4431 6888999999999999999 5 8999999999999  6677776 677 7899999999


Q ss_pred             EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeeccc
Q 041168          131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVN  166 (177)
Q Consensus       131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~  166 (177)
                      +|++.|+++.    ..+|..... ++|++||+++|.
T Consensus       457 lDlS~N~L~~----~~l~~~~p~-p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  457 LDLSCNNLSE----VTLPEALPS-PNLKYLDLSGNT  487 (1081)
T ss_pred             Eecccchhhh----hhhhhhCCC-cccceeeccCCc
Confidence            9999995542    344443322 799999999996

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.94  E-value=3.8e-11  Score=100.76  Aligned_cols=110  Identities=25%  Similarity=0.327  Sum_probs=61.0

Q ss_pred             cEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCC-CCCChhhhCCCCCCE
Q 041168           54 HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFF-GQIPAELLELSDLES  130 (177)
Q Consensus        54 ~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~-~~~p~~~~~l~~L~~  130 (177)
                      +++.|+|++|.|+. +..  ......+|+.|+||+|+++ . +|..+..++.|+.  +.+|++. .-+|..|+.+.+|++
T Consensus       246 ~LrrLNLS~N~ite-L~~--~~~~W~~lEtLNlSrNQLt-~-LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Lev  320 (1255)
T KOG0444|consen  246 NLRRLNLSGNKITE-LNM--TEGEWENLETLNLSRNQLT-V-LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEV  320 (1255)
T ss_pred             hhheeccCcCceee-eec--cHHHHhhhhhhccccchhc-c-chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHH
Confidence            34444444444441 222  2233344444555555554 3 5566666666665  4445443 135566666666666


Q ss_pred             EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCccc
Q 041168          131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYAL  175 (177)
Q Consensus       131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~l  175 (177)
                      +..++|.  +    ..+|+.++++.+|+.|.|+.|.+. ++|+.|
T Consensus       321 f~aanN~--L----ElVPEglcRC~kL~kL~L~~NrLi-TLPeaI  358 (1255)
T KOG0444|consen  321 FHAANNK--L----ELVPEGLCRCVKLQKLKLDHNRLI-TLPEAI  358 (1255)
T ss_pred             HHhhccc--c----ccCchhhhhhHHHHHhccccccee-echhhh
Confidence            6666663  2    346777777888888888888776 466654

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.86  E-value=2.4e-10  Score=96.04  Aligned_cols=105  Identities=29%  Similarity=0.391  Sum_probs=95.2

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      -++++|+++.|+++ .+|.  .+..++.|+.|++.+|+++-..+|+.++.+..|+.  +++|++. .+|+++..|..|+.
T Consensus       268 ~~lEtLNlSrNQLt-~LP~--avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~k  343 (1255)
T KOG0444|consen  268 ENLETLNLSRNQLT-VLPD--AVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQK  343 (1255)
T ss_pred             hhhhhhccccchhc-cchH--HHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHH
Confidence            57889999999999 6888  99999999999999999986558999999999999  7788776 89999999999999


Q ss_pred             EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccC
Q 041168          131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNT  167 (177)
Q Consensus       131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l  167 (177)
                      |.|+.|  ++    -.+|+.+.-++.|+.||+..|.-
T Consensus       344 L~L~~N--rL----iTLPeaIHlL~~l~vLDlreNpn  374 (1255)
T KOG0444|consen  344 LKLDHN--RL----ITLPEAIHLLPDLKVLDLRENPN  374 (1255)
T ss_pred             hccccc--ce----eechhhhhhcCCcceeeccCCcC
Confidence            999999  55    56899999999999999999964

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.85  E-value=1.2e-09  Score=90.98  Aligned_cols=107  Identities=23%  Similarity=0.254  Sum_probs=73.6

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCC-ccccCCccccc--cccccCCCCCChhhhCCCCCC
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIP-SEIKNLSRLTA--LSNPSFFGQIPAELLELSDLE  129 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p-~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~  129 (177)
                      ++++.|+|.+|.|+..-..  ++..++.|+.|||+.|.|+.  +| ..|..-.++++  |++|+|+..-...|..+.+|.
T Consensus       125 ghl~~L~L~~N~I~sv~se--~L~~l~alrslDLSrN~is~--i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~  200 (873)
T KOG4194|consen  125 GHLEKLDLRHNLISSVTSE--ELSALPALRSLDLSRNLISE--IPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLL  200 (873)
T ss_pred             cceeEEeeeccccccccHH--HHHhHhhhhhhhhhhchhhc--ccCCCCCCCCCceEEeeccccccccccccccccchhe
Confidence            5678888888877755555  67777778888888887774  33 44555566666  777777755556677777777


Q ss_pred             EEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCC
Q 041168          130 SLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTA  168 (177)
Q Consensus       130 ~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~  168 (177)
                      +|.|+.|  ++   +..-+..|+++++|+.|+|..|.|.
T Consensus       201 tlkLsrN--ri---ttLp~r~Fk~L~~L~~LdLnrN~ir  234 (873)
T KOG4194|consen  201 TLKLSRN--RI---TTLPQRSFKRLPKLESLDLNRNRIR  234 (873)
T ss_pred             eeecccC--cc---cccCHHHhhhcchhhhhhcccccee
Confidence            7777777  55   4433455666777777777777764

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.74  E-value=3.7e-09  Score=63.54  Aligned_cols=54  Identities=35%  Similarity=0.416  Sum_probs=26.9

Q ss_pred             cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccC
Q 041168          109 LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNT  167 (177)
Q Consensus       109 ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l  167 (177)
                      +++|++....+..|..+++|++|++++|  .+   ....+..|..+++|++|++++|+|
T Consensus         8 l~~n~l~~i~~~~f~~l~~L~~L~l~~N--~l---~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    8 LSNNKLTEIPPDSFSNLPNLETLDLSNN--NL---TSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             ETSSTESEECTTTTTTGTTESEEEETSS--SE---SEEETTTTTTSTTESEEEETSSSB
T ss_pred             CCCCCCCccCHHHHcCCCCCCEeEccCC--cc---CccCHHHHcCCCCCCEEeCcCCcC
Confidence            3334443222334455555666666655  33   233334555666666666666543

...

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.73  E-value=8.2e-10  Score=95.75  Aligned_cols=105  Identities=31%  Similarity=0.396  Sum_probs=92.1

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCC-ccccCCccccc--cccccCCCCCChhhhCCCCCC
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIP-SEIKNLSRLTA--LSNPSFFGQIPAELLELSDLE  129 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p-~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~  129 (177)
                      ..|+.|.+.+|.+++..-+  .+.++++|+.|+|++|.+. . +| ..+.++..|+.  |++|++. .+|..+..+..|+
T Consensus       359 ~~Lq~LylanN~Ltd~c~p--~l~~~~hLKVLhLsyNrL~-~-fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~  433 (1081)
T KOG0618|consen  359 AALQELYLANNHLTDSCFP--VLVNFKHLKVLHLSYNRLN-S-FPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLH  433 (1081)
T ss_pred             HHHHHHHHhcCcccccchh--hhccccceeeeeecccccc-c-CCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhH
Confidence            4678899999999987776  7899999999999999998 4 67 45778889999  9999998 8899999999999


Q ss_pred             EEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCC
Q 041168          130 SLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAS  169 (177)
Q Consensus       130 ~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g  169 (177)
                      +|...+|  .+    ..+| ++..++.|+.+|++.|.++.
T Consensus       434 tL~ahsN--~l----~~fP-e~~~l~qL~~lDlS~N~L~~  466 (1081)
T KOG0618|consen  434 TLRAHSN--QL----LSFP-ELAQLPQLKVLDLSCNNLSE  466 (1081)
T ss_pred             HHhhcCC--ce----eech-hhhhcCcceEEecccchhhh
Confidence            9999999  44    4578 78999999999999999873

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.73  E-value=2e-08  Score=73.06  Aligned_cols=101  Identities=31%  Similarity=0.262  Sum_probs=48.6

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccc-cCCccccc--cccccCCCCC-ChhhhCCCCC
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEI-KNLSRLTA--LSNPSFFGQI-PAELLELSDL  128 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~-~~l~~L~~--ls~n~l~~~~-p~~~~~l~~L  128 (177)
                      .+++.|++++|.++. +.   .+..++.|+.|++++|.|+.  +.+.+ ..+++|+.  +++|++...- -..+..+++|
T Consensus        42 ~~L~~L~Ls~N~I~~-l~---~l~~L~~L~~L~L~~N~I~~--i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L  115 (175)
T PF14580_consen   42 DKLEVLDLSNNQITK-LE---GLPGLPRLKTLDLSNNRISS--ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKL  115 (175)
T ss_dssp             TT--EEE-TTS--S---T---T----TT--EEE--SS---S---CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT-
T ss_pred             cCCCEEECCCCCCcc-cc---CccChhhhhhcccCCCCCCc--cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCc
Confidence            579999999999984 43   47889999999999999994  65555 46899999  9999997421 2457789999


Q ss_pred             CEEeCCCCcCCcccCCCc-hhHHhhcCCCCCEEEe
Q 041168          129 ESLDLSFNNFHLKLQGPS-LANLAEKLANLKVLHL  162 (177)
Q Consensus       129 ~~L~Ls~N~~~l~~~~~~-~p~~~~~l~~L~~L~L  162 (177)
                      ++|++.+|++.-   ... -...+..+|+|+.||-
T Consensus       116 ~~L~L~~NPv~~---~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen  116 RVLSLEGNPVCE---KKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             -EEE-TT-GGGG---STTHHHHHHHH-TT-SEETT
T ss_pred             ceeeccCCcccc---hhhHHHHHHHHcChhheeCC
Confidence            999999996432   122 2334778999999974

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.73  E-value=1e-08  Score=57.27  Aligned_cols=38  Identities=39%  Similarity=0.863  Sum_probs=25.9

Q ss_pred             ChHHHHHhhhCccCCCCCCCCCCCCCCCCCCCCCCC-CCCCCccceEEEc
Q 041168            1 RSALLQFKQSLTVVQCSFDDYPSAYPKVASWSQEEE-NRDCCLWDGIKCN   49 (177)
Q Consensus         1 ~~~l~~~k~~~~~~~~~~~~~~~~~~~l~~W~~~~~-~~~~C~w~gv~c~   49 (177)
                      ++||++||+++..++..         .+.+|+.  . ..++|.|.||+|+
T Consensus         5 ~~aLl~~k~~l~~~~~~---------~l~~W~~--~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    5 RQALLAFKKSLNNDPSG---------VLSSWNP--SSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHCTT-SC-C---------CCTT--T--T--S-CCCSTTEEE-
T ss_pred             HHHHHHHHHhcccccCc---------ccccCCC--cCCCCCeeeccEEeC
Confidence            47999999999964432         7999982  2 2799999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.73  E-value=2.5e-09  Score=85.37  Aligned_cols=108  Identities=22%  Similarity=0.247  Sum_probs=91.3

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc---cccccCCCCCChhhhCCCCCC
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA---LSNPSFFGQIPAELLELSDLE  129 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~---ls~n~l~~~~p~~~~~l~~L~  129 (177)
                      ...+.|+|..|.|+...+.  +|..++.|+.|+|++|.|+.. -|..|..+.+|..   .++|+|.......|+++.+|+
T Consensus        67 ~~tveirLdqN~I~~iP~~--aF~~l~~LRrLdLS~N~Is~I-~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slq  143 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPG--AFKTLHRLRRLDLSKNNISFI-APDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQ  143 (498)
T ss_pred             CcceEEEeccCCcccCChh--hccchhhhceecccccchhhc-ChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHH
Confidence            5788999999999976666  899999999999999999977 7999999999888   566999855556789999999


Q ss_pred             EEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCC
Q 041168          130 SLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTA  168 (177)
Q Consensus       130 ~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~  168 (177)
                      .|.+.-|  .+   .-...+.|..+++|..|.+-.|.+.
T Consensus       144 rLllNan--~i---~Cir~~al~dL~~l~lLslyDn~~q  177 (498)
T KOG4237|consen  144 RLLLNAN--HI---NCIRQDALRDLPSLSLLSLYDNKIQ  177 (498)
T ss_pred             HHhcChh--hh---cchhHHHHHHhhhcchhcccchhhh
Confidence            9988888  45   4556778888999988888888775

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.67  E-value=1.3e-08  Score=61.09  Aligned_cols=56  Identities=39%  Similarity=0.454  Sum_probs=28.0

Q ss_pred             CCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeCCCC
Q 041168           80 HLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFN  136 (177)
Q Consensus        80 ~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N  136 (177)
                      +|++|++++|+++.. .+..|..+++|++  +++|.+....+..|..+++|++|++++|
T Consensus         2 ~L~~L~l~~n~l~~i-~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    2 NLESLDLSNNKLTEI-PPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TESEEEETSSTESEE-CTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             cCcEEECCCCCCCcc-CHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            344444444444421 1234444444444  4444444344445566666666666666

...

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.64  E-value=3.3e-08  Score=86.40  Aligned_cols=43  Identities=23%  Similarity=0.165  Sum_probs=33.4

Q ss_pred             CCCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCccc
Q 041168          127 DLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYAL  175 (177)
Q Consensus       127 ~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~l  175 (177)
                      +|+.|++++|  .+    ..+|..+..+++|+.|+|++|+|++.+|..+
T Consensus       423 ~L~~L~Ls~N--qL----t~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        423 GLLSLSVYRN--QL----TRLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             hhhhhhhccC--cc----cccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            4555666666  33    3578889999999999999999998877755

>PLN03210 Resistant to P

Probab=98.63  E-value=1.3e-07  Score=86.63  Aligned_cols=109  Identities=23%  Similarity=0.289  Sum_probs=64.4

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      .+++.|++.++.+. .++.  .+..+++|+.|+|+++..... +| .+..+++|++  +++|.....+|..+..+++|+.
T Consensus       611 ~~L~~L~L~~s~l~-~L~~--~~~~l~~Lk~L~Ls~~~~l~~-ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~  685 (1153)
T PLN03210        611 ENLVKLQMQGSKLE-KLWD--GVHSLTGLRNIDLRGSKNLKE-IP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLED  685 (1153)
T ss_pred             cCCcEEECcCcccc-cccc--ccccCCCCCEEECCCCCCcCc-CC-ccccCCcccEEEecCCCCccccchhhhccCCCCE
Confidence            35666677666665 3444  556667777777766543333 44 3566667776  6666555566777777777777


Q ss_pred             EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCC
Q 041168          131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVP  172 (177)
Q Consensus       131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p  172 (177)
                      |++++|. .    ...+|..+ .+++|+.|++++|...+.+|
T Consensus       686 L~L~~c~-~----L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p  721 (1153)
T PLN03210        686 LDMSRCE-N----LEILPTGI-NLKSLYRLNLSGCSRLKSFP  721 (1153)
T ss_pred             EeCCCCC-C----cCccCCcC-CCCCCCEEeCCCCCCccccc
Confidence            7777652 2    23455433 45666666666654443343

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=98.55  E-value=3.5e-07  Score=83.91  Aligned_cols=111  Identities=19%  Similarity=0.222  Sum_probs=88.3

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      .+++.|++.++.+. .+|.  .+ .+.+|+.|++++|.+. . ++..+..+++|++  |+++.....+|. +..+++|++
T Consensus       589 ~~Lr~L~~~~~~l~-~lP~--~f-~~~~L~~L~L~~s~l~-~-L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~  661 (1153)
T PLN03210        589 PKLRLLRWDKYPLR-CMPS--NF-RPENLVKLQMQGSKLE-K-LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLET  661 (1153)
T ss_pred             cccEEEEecCCCCC-CCCC--cC-CccCCcEEECcCcccc-c-cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccE
Confidence            45778888887766 4565  44 5688999999999988 4 7888888999999  887765556764 788999999


Q ss_pred             EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCccc
Q 041168          131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYAL  175 (177)
Q Consensus       131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~l  175 (177)
                      |+|++|.  .   ...+|..+..+++|+.|++++|...+.+|..+
T Consensus       662 L~L~~c~--~---L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i  701 (1153)
T PLN03210        662 LKLSDCS--S---LVELPSSIQYLNKLEDLDMSRCENLEILPTGI  701 (1153)
T ss_pred             EEecCCC--C---ccccchhhhccCCCCEEeCCCCCCcCccCCcC
Confidence            9999983  3   46789999999999999999987666777643

syringae 6; Provisional

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.54  E-value=3.3e-08  Score=77.77  Aligned_cols=18  Identities=39%  Similarity=0.549  Sum_probs=9.5

Q ss_pred             hhcCCCCCEEEeecccCC
Q 041168          151 AEKLANLKVLHLGQVNTA  168 (177)
Q Consensus       151 ~~~l~~L~~L~Ls~N~l~  168 (177)
                      +..+++|++|++++|.++
T Consensus       217 ~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         217 LASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             hcccCCCCEEecCCCcCc
Confidence            444555555555555554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.54  E-value=2.2e-08  Score=78.79  Aligned_cols=114  Identities=25%  Similarity=0.235  Sum_probs=78.4

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcC---CcEEEccCCCCCCCC---CCccccCC-ccccc--cccccCCCC----CC
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVH---LEWLVLSNNHFNFSE---IPSEIKNL-SRLTA--LSNPSFFGQ----IP  119 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~---L~~L~Ls~n~l~~~~---~p~~~~~l-~~L~~--ls~n~l~~~----~p  119 (177)
                      .+++.|++++|.+.+..+.  .+..+..   |++|++++|.++...   +...+..+ ++|+.  +++|.+.+.    ++
T Consensus        81 ~~L~~L~l~~~~~~~~~~~--~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~  158 (319)
T cd00116          81 CGLQELDLSDNALGPDGCG--VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALA  158 (319)
T ss_pred             CceeEEEccCCCCChhHHH--HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHH
Confidence            6899999999988754444  4555544   999999999887320   22345556 78888  889988742    33


Q ss_pred             hhhhCCCCCCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCC
Q 041168          120 AELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAS  169 (177)
Q Consensus       120 ~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g  169 (177)
                      ..+..+++|++|++++|.+.-.. ...++..+..+++|++|++++|.+.+
T Consensus       159 ~~~~~~~~L~~L~l~~n~l~~~~-~~~l~~~l~~~~~L~~L~L~~n~i~~  207 (319)
T cd00116         159 KALRANRDLKELNLANNGIGDAG-IRALAEGLKANCNLEVLDLNNNGLTD  207 (319)
T ss_pred             HHHHhCCCcCEEECcCCCCchHH-HHHHHHHHHhCCCCCEEeccCCccCh
Confidence            45667788999999999432100 01244556677899999999998864

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.53  E-value=2.7e-08  Score=82.80  Aligned_cols=101  Identities=27%  Similarity=0.305  Sum_probs=74.0

Q ss_pred             EEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEe
Q 041168           55 VIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLD  132 (177)
Q Consensus        55 l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~  132 (177)
                      |++|.+++|+++ .+|.  .+..+.+|..|+.+.|.+. . +|..++.+.+|+.  +..|++. .+|+++. .-.|..||
T Consensus       145 Lkvli~sNNkl~-~lp~--~ig~~~tl~~ld~s~nei~-s-lpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lD  217 (722)
T KOG0532|consen  145 LKVLIVSNNKLT-SLPE--EIGLLPTLAHLDVSKNEIQ-S-LPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLD  217 (722)
T ss_pred             ceeEEEecCccc-cCCc--ccccchhHHHhhhhhhhhh-h-chHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeee
Confidence            455555566655 3555  5566666777777777766 3 6777777777777  6777776 6777777 44588999


Q ss_pred             CCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCC
Q 041168          133 LSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTA  168 (177)
Q Consensus       133 Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~  168 (177)
                      ++.|+  +    ..+|-.|.+|+.|++|-|.+|++.
T Consensus       218 fScNk--i----s~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  218 FSCNK--I----SYLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             cccCc--e----eecchhhhhhhhheeeeeccCCCC
Confidence            99994  3    458999999999999999999987

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.49  E-value=3.6e-07  Score=79.99  Aligned_cols=99  Identities=25%  Similarity=0.347  Sum_probs=58.2

Q ss_pred             cEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEE
Q 041168           54 HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESL  131 (177)
Q Consensus        54 ~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L  131 (177)
                      .++.|++++|.++ .+|.  .+.  .+|+.|++++|.++ . +|..+.  ..|+.  |++|++. .+|..+.  .+|+.|
T Consensus       200 ~L~~L~Ls~N~Lt-sLP~--~l~--~nL~~L~Ls~N~Lt-s-LP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L  267 (754)
T PRK15370        200 QITTLILDNNELK-SLPE--NLQ--GNIKTLYANSNQLT-S-IPATLP--DTIQEMELSINRIT-ELPERLP--SALQSL  267 (754)
T ss_pred             CCcEEEecCCCCC-cCCh--hhc--cCCCEEECCCCccc-c-CChhhh--ccccEEECcCCccC-cCChhHh--CCCCEE
Confidence            4566666666666 3444  332  46677777777766 3 554433  24555  6677665 5565543  467777


Q ss_pred             eCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCc
Q 041168          132 DLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPY  173 (177)
Q Consensus       132 ~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~  173 (177)
                      ++++|  .+   . .+|..+.  ++|+.|+|++|+|++ +|.
T Consensus       268 ~Ls~N--~L---~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~  300 (754)
T PRK15370        268 DLFHN--KI---S-CLPENLP--EELRYLSVYDNSIRT-LPA  300 (754)
T ss_pred             ECcCC--cc---C-ccccccC--CCCcEEECCCCcccc-Ccc
Confidence            77777  33   2 3554432  467777777777763 444

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.47  E-value=2e-08  Score=78.09  Aligned_cols=105  Identities=25%  Similarity=0.216  Sum_probs=64.6

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      +.++.|++++|.+.. +.   .+..+++|+.|||++|.++.  +...-..+-+.++  |+.|.+. .+ ..++.+-+|..
T Consensus       307 Pkir~L~lS~N~i~~-v~---nLa~L~~L~~LDLS~N~Ls~--~~Gwh~KLGNIKtL~La~N~iE-~L-SGL~KLYSLvn  378 (490)
T KOG1259|consen  307 PKLRRLILSQNRIRT-VQ---NLAELPQLQLLDLSGNLLAE--CVGWHLKLGNIKTLKLAQNKIE-TL-SGLRKLYSLVN  378 (490)
T ss_pred             cceeEEeccccceee-eh---hhhhcccceEeecccchhHh--hhhhHhhhcCEeeeehhhhhHh-hh-hhhHhhhhhee
Confidence            566666666666652 22   35556666666666666652  2222233444555  6666653 22 45677788888


Q ss_pred             EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCC
Q 041168          131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAS  169 (177)
Q Consensus       131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g  169 (177)
                      ||+++|+|.-    -.-...++++|.|+++.|.+|++.+
T Consensus       379 LDl~~N~Ie~----ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  379 LDLSSNQIEE----LDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             ccccccchhh----HHHhcccccccHHHHHhhcCCCccc
Confidence            8888884321    1123457888899999999998885

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.44  E-value=4e-08  Score=76.49  Aligned_cols=105  Identities=23%  Similarity=0.291  Sum_probs=83.0

Q ss_pred             CCCCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCC
Q 041168           50 EDNGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSD  127 (177)
Q Consensus        50 ~~~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~  127 (177)
                      .+...++.+|+++|.|+ .+..  ++.-.+.++.|++++|.+..  + ..+..+++|+.  |++|.++ .+...-..+-+
T Consensus       281 dTWq~LtelDLS~N~I~-~iDE--SvKL~Pkir~L~lS~N~i~~--v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGN  353 (490)
T KOG1259|consen  281 DTWQELTELDLSGNLIT-QIDE--SVKLAPKLRRLILSQNRIRT--V-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGN  353 (490)
T ss_pred             chHhhhhhccccccchh-hhhh--hhhhccceeEEeccccceee--e-hhhhhcccceEeecccchhH-hhhhhHhhhcC
Confidence            33457889999999988 4666  67778999999999999983  3 44888999999  9999987 44454557778


Q ss_pred             CCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCC
Q 041168          128 LESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTA  168 (177)
Q Consensus       128 L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~  168 (177)
                      +++|.|+.|  .+    .. -..+..+-+|..||+++|+|.
T Consensus       354 IKtL~La~N--~i----E~-LSGL~KLYSLvnLDl~~N~Ie  387 (490)
T KOG1259|consen  354 IKTLKLAQN--KI----ET-LSGLRKLYSLVNLDLSSNQIE  387 (490)
T ss_pred             Eeeeehhhh--hH----hh-hhhhHhhhhheeccccccchh
Confidence            999999999  33    22 245778899999999999985

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.42  E-value=3.7e-07  Score=79.98  Aligned_cols=102  Identities=20%  Similarity=0.326  Sum_probs=57.8

Q ss_pred             cEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccC-------------------Cccccc--cccc
Q 041168           54 HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKN-------------------LSRLTA--LSNP  112 (177)
Q Consensus        54 ~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~-------------------l~~L~~--ls~n  112 (177)
                      .|+.|++++|.++ .+|.  .+.  ++|+.|++++|+++.  +|..+..                   .++|+.  +++|
T Consensus       263 ~L~~L~Ls~N~L~-~LP~--~l~--~sL~~L~Ls~N~Lt~--LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N  335 (754)
T PRK15370        263 ALQSLDLFHNKIS-CLPE--NLP--EELRYLSVYDNSIRT--LPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGEN  335 (754)
T ss_pred             CCCEEECcCCccC-cccc--ccC--CCCcEEECCCCcccc--CcccchhhHHHHHhcCCccccCCccccccceeccccCC
Confidence            5777888887777 3555  442  467777777777763  4432220                   123444  4455


Q ss_pred             cCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCcc
Q 041168          113 SFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYA  174 (177)
Q Consensus       113 ~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~  174 (177)
                      .+. .+|..+  .++|+.|++++|+  +    ..+|..+.  ++|+.|+|++|+++ .+|..
T Consensus       336 ~Lt-~LP~~l--~~sL~~L~Ls~N~--L----~~LP~~lp--~~L~~LdLs~N~Lt-~LP~~  385 (754)
T PRK15370        336 ALT-SLPASL--PPELQVLDVSKNQ--I----TVLPETLP--PTITTLDVSRNALT-NLPEN  385 (754)
T ss_pred             ccc-cCChhh--cCcccEEECCCCC--C----CcCChhhc--CCcCEEECCCCcCC-CCCHh
Confidence            544 244433  2567777777773  3    23454442  56777777777776 35554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.36  E-value=8.2e-07  Score=77.85  Aligned_cols=33  Identities=21%  Similarity=0.269  Sum_probs=18.9

Q ss_pred             cEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCC
Q 041168           54 HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFN   92 (177)
Q Consensus        54 ~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~   92 (177)
                      +++.|++.+|.++. +|.  .   +++|++|++++|+++
T Consensus       223 ~L~~L~L~~N~Lt~-LP~--l---p~~Lk~LdLs~N~Lt  255 (788)
T PRK15387        223 HITTLVIPDNNLTS-LPA--L---PPELRTLEVSGNQLT  255 (788)
T ss_pred             CCCEEEccCCcCCC-CCC--C---CCCCcEEEecCCccC
Confidence            45666666666663 333  1   355666666666665

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.28  E-value=2.2e-07  Score=74.49  Aligned_cols=89  Identities=21%  Similarity=0.148  Sum_probs=65.6

Q ss_pred             ccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHh
Q 041168           74 SLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLA  151 (177)
Q Consensus        74 ~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~  151 (177)
                      .|..+++|+.|+|++|+++.. -+..|..+..++.  |..|++...-...|.++..|++|+|.+|  ++   +...|..|
T Consensus       269 cf~~L~~L~~lnlsnN~i~~i-~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N--~i---t~~~~~aF  342 (498)
T KOG4237|consen  269 CFKKLPNLRKLNLSNNKITRI-EDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDN--QI---TTVAPGAF  342 (498)
T ss_pred             HHhhcccceEeccCCCccchh-hhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCC--ee---EEEecccc
Confidence            467778888888888888766 6677777777777  7778776554556777788888888888  44   45567777


Q ss_pred             hcCCCCCEEEeecccCC
Q 041168          152 EKLANLKVLHLGQVNTA  168 (177)
Q Consensus       152 ~~l~~L~~L~Ls~N~l~  168 (177)
                      ..+.+|.+|+|-.|++.
T Consensus       343 ~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  343 QTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             cccceeeeeehccCccc
Confidence            77778888887777764

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.28  E-value=6.8e-08  Score=80.44  Aligned_cols=109  Identities=29%  Similarity=0.387  Sum_probs=75.7

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      ..++.|+|+.|+++ .+|.  .++.+ -|+.|.+++|+++ . +|+.++.+..|..  .+.|.+. .+|..++.+.+|+.
T Consensus       121 ~~lt~l~ls~NqlS-~lp~--~lC~l-pLkvli~sNNkl~-~-lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~  193 (722)
T KOG0532|consen  121 EALTFLDLSSNQLS-HLPD--GLCDL-PLKVLIVSNNKLT-S-LPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRD  193 (722)
T ss_pred             hHHHHhhhccchhh-cCCh--hhhcC-cceeEEEecCccc-c-CCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHH
Confidence            34566777777776 4555  45544 3677777777777 3 6777776666666  6677776 66777777777777


Q ss_pred             EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCcccc
Q 041168          131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYALA  176 (177)
Q Consensus       131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~l~  176 (177)
                      |.+..|  .+    ..+|+++..| .|..||++.|+++ .||-.|.
T Consensus       194 l~vrRn--~l----~~lp~El~~L-pLi~lDfScNkis-~iPv~fr  231 (722)
T KOG0532|consen  194 LNVRRN--HL----EDLPEELCSL-PLIRLDFSCNKIS-YLPVDFR  231 (722)
T ss_pred             HHHhhh--hh----hhCCHHHhCC-ceeeeecccCcee-ecchhhh
Confidence            777777  33    4577887754 5888999999988 5776653

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.27  E-value=1.2e-06  Score=49.02  Aligned_cols=38  Identities=34%  Similarity=0.459  Sum_probs=31.0

Q ss_pred             CCCCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCC
Q 041168          126 SDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAS  169 (177)
Q Consensus       126 ~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g  169 (177)
                      ++|++|++++|  .+    ..+|..+++|++|++|++++|+|+.
T Consensus         1 ~~L~~L~l~~N--~i----~~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNN--QI----TDLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSS--S-----SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCC--CC----cccCchHhCCCCCCEEEecCCCCCC
Confidence            47899999999  45    4578789999999999999999883

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.19  E-value=1.1e-06  Score=78.13  Aligned_cols=106  Identities=27%  Similarity=0.279  Sum_probs=84.7

Q ss_pred             CCcEEEEEccCCc--cccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCC
Q 041168           52 NGHVIRLDLTSSC--LYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSD  127 (177)
Q Consensus        52 ~~~l~~L~l~~n~--l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~  127 (177)
                      .+.+++|-+..|.  +......  .|..++.|++|||++|.--+. +|..++.+-+||+  +++..+. .+|..++.+..
T Consensus       544 ~~~L~tLll~~n~~~l~~is~~--ff~~m~~LrVLDLs~~~~l~~-LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~  619 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEISGE--FFRSLPLLRVLDLSGNSSLSK-LPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKK  619 (889)
T ss_pred             CCccceEEEeecchhhhhcCHH--HHhhCcceEEEECCCCCccCc-CChHHhhhhhhhcccccCCCcc-ccchHHHHHHh
Confidence            3578888888886  4422222  377799999999998776656 9999999999999  9999998 89999999999


Q ss_pred             CCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeeccc
Q 041168          128 LESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVN  166 (177)
Q Consensus       128 L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~  166 (177)
                      |.+|++..+. .    ...+|.....|.+|++|.+-.-.
T Consensus       620 L~~Lnl~~~~-~----l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  620 LIYLNLEVTG-R----LESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             hheecccccc-c----cccccchhhhcccccEEEeeccc
Confidence            9999999883 2    24456667779999999887654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.18  E-value=1.2e-06  Score=71.28  Aligned_cols=100  Identities=34%  Similarity=0.425  Sum_probs=52.9

Q ss_pred             cEEEEEccCCccccccCCCcccccCc-CCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           54 HVIRLDLTSSCLYGSINSSSSLFQLV-HLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        54 ~l~~L~l~~n~l~~~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      .++.|++.+|.++. ++.  ....+. +|+.|++++|.+. . +|..+..++.|+.  +++|++. .+|...+.++.|+.
T Consensus       117 ~l~~L~l~~n~i~~-i~~--~~~~~~~nL~~L~l~~N~i~-~-l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~  190 (394)
T COG4886         117 NLTSLDLDNNNITD-IPP--LIGLLKSNLKELDLSDNKIE-S-LPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNN  190 (394)
T ss_pred             ceeEEecCCccccc-Ccc--ccccchhhcccccccccchh-h-hhhhhhccccccccccCCchhh-hhhhhhhhhhhhhh
Confidence            45556666665552 333  333342 5666666666665 2 4445555666666  5666655 44444445556666


Q ss_pred             EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecc
Q 041168          131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQV  165 (177)
Q Consensus       131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N  165 (177)
                      |++++|+  +    ..+|.....+..|++|.+++|
T Consensus       191 L~ls~N~--i----~~l~~~~~~~~~L~~l~~~~N  219 (394)
T COG4886         191 LDLSGNK--I----SDLPPEIELLSALEELDLSNN  219 (394)
T ss_pred             eeccCCc--c----ccCchhhhhhhhhhhhhhcCC
Confidence            6666662  2    334444444444555555555

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.05  E-value=1.4e-06  Score=70.97  Aligned_cols=109  Identities=34%  Similarity=0.407  Sum_probs=75.8

Q ss_pred             cEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEE
Q 041168           54 HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESL  131 (177)
Q Consensus        54 ~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L  131 (177)
                      +++.|++++|.+. .++.  .+..++.|+.|++++|++. . +|...+.++.|+.  +++|++. .+|..+..+..|++|
T Consensus       141 nL~~L~l~~N~i~-~l~~--~~~~l~~L~~L~l~~N~l~-~-l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l  214 (394)
T COG4886         141 NLKELDLSDNKIE-SLPS--PLRNLPNLKNLDLSFNDLS-D-LPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEEL  214 (394)
T ss_pred             hcccccccccchh-hhhh--hhhccccccccccCCchhh-h-hhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhh
Confidence            7889999999887 4544  5788888999999999888 3 6665557777777  8888887 667665566667777


Q ss_pred             eCCCCc-CCccc-------------C---CCchhHHhhcCCCCCEEEeecccCC
Q 041168          132 DLSFNN-FHLKL-------------Q---GPSLANLAEKLANLKVLHLGQVNTA  168 (177)
Q Consensus       132 ~Ls~N~-~~l~~-------------~---~~~~p~~~~~l~~L~~L~Ls~N~l~  168 (177)
                      .+++|. +....             .   ...++..+..+++++.|++++|.++
T Consensus       215 ~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~  268 (394)
T COG4886         215 DLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQIS  268 (394)
T ss_pred             hhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccc
Confidence            777772 11000             0   0112455667777888888888776

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.94  E-value=9.4e-07  Score=61.51  Aligned_cols=81  Identities=28%  Similarity=0.402  Sum_probs=40.7

Q ss_pred             cCCcEEEccCCCCCCCCCCccccC-Cccccc--cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhhcCC
Q 041168           79 VHLEWLVLSNNHFNFSEIPSEIKN-LSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLA  155 (177)
Q Consensus        79 ~~L~~L~Ls~n~l~~~~~p~~~~~-l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~  155 (177)
                      ..|+..+|++|.+..  .|+.|.. ++..++  |++|.++ .+|.++..++.|+.|+++.|+  +    ...|..+..+.
T Consensus        53 ~el~~i~ls~N~fk~--fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~--l----~~~p~vi~~L~  123 (177)
T KOG4579|consen   53 YELTKISLSDNGFKK--FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNP--L----NAEPRVIAPLI  123 (177)
T ss_pred             ceEEEEecccchhhh--CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCc--c----ccchHHHHHHH
Confidence            344445555555552  4444433 224444  5555555 455555555555555555552  2    22444444455


Q ss_pred             CCCEEEeecccCC
Q 041168          156 NLKVLHLGQVNTA  168 (177)
Q Consensus       156 ~L~~L~Ls~N~l~  168 (177)
                      +|..|+..+|.+.
T Consensus       124 ~l~~Lds~~na~~  136 (177)
T KOG4579|consen  124 KLDMLDSPENARA  136 (177)
T ss_pred             hHHHhcCCCCccc
Confidence            5555555555443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.93  E-value=2e-06  Score=59.91  Aligned_cols=110  Identities=15%  Similarity=0.176  Sum_probs=80.9

Q ss_pred             CCcEEEEEccCCccccccCCCccc-ccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCC
Q 041168           52 NGHVIRLDLTSSCLYGSINSSSSL-FQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDL  128 (177)
Q Consensus        52 ~~~l~~L~l~~n~l~~~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L  128 (177)
                      ..+++.+++++|.+.. +|+  .| ..++.++.|+|++|+++ . +|..+..++.|+.  ++.|.+. ..|..+..+.+|
T Consensus        52 ~~el~~i~ls~N~fk~-fp~--kft~kf~t~t~lNl~~neis-d-vPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l  125 (177)
T KOG4579|consen   52 GYELTKISLSDNGFKK-FPK--KFTIKFPTATTLNLANNEIS-D-VPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKL  125 (177)
T ss_pred             CceEEEEecccchhhh-CCH--HHhhccchhhhhhcchhhhh-h-chHHHhhhHHhhhcccccCccc-cchHHHHHHHhH
Confidence            3578999999999984 555  44 34568999999999999 3 8999999999999  9999998 678888889999


Q ss_pred             CEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCc
Q 041168          129 ESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPY  173 (177)
Q Consensus       129 ~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~  173 (177)
                      -.|+..+|.  .    ..+|..+-.-...-..++.++.+.+.-|.
T Consensus       126 ~~Lds~~na--~----~eid~dl~~s~~~al~~lgnepl~~~~~~  164 (177)
T KOG4579|consen  126 DMLDSPENA--R----AEIDVDLFYSSLPALIKLGNEPLGDETKK  164 (177)
T ss_pred             HHhcCCCCc--c----ccCcHHHhccccHHHHHhcCCcccccCcc
Confidence            999998883  3    33443322222222334566677665443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.90  E-value=4.4e-07  Score=77.80  Aligned_cols=102  Identities=26%  Similarity=0.259  Sum_probs=43.2

Q ss_pred             cEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEE
Q 041168           54 HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESL  131 (177)
Q Consensus        54 ~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L  131 (177)
                      .++.|+|++|+++. +.   .+..++.|++|||++|.+. . +|..-..-..|+.  +++|.+. .+ ..+.++.+|+.|
T Consensus       188 ale~LnLshNk~~~-v~---~Lr~l~~LkhLDlsyN~L~-~-vp~l~~~gc~L~~L~lrnN~l~-tL-~gie~LksL~~L  259 (1096)
T KOG1859|consen  188 ALESLNLSHNKFTK-VD---NLRRLPKLKHLDLSYNCLR-H-VPQLSMVGCKLQLLNLRNNALT-TL-RGIENLKSLYGL  259 (1096)
T ss_pred             Hhhhhccchhhhhh-hH---HHHhcccccccccccchhc-c-ccccchhhhhheeeeecccHHH-hh-hhHHhhhhhhcc
Confidence            44555555555442 11   2444555555555555554 1 3321100111333  4444443 11 234555555555


Q ss_pred             eCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccC
Q 041168          132 DLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNT  167 (177)
Q Consensus       132 ~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l  167 (177)
                      |+++|  -+..  -.--..++.|..|+.|+|.+|++
T Consensus       260 DlsyN--ll~~--hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  260 DLSYN--LLSE--HSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             chhHh--hhhc--chhhhHHHHHHHHHHHhhcCCcc
Confidence            55555  2200  00111234445555555555554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.80  E-value=1.9e-05  Score=44.18  Aligned_cols=36  Identities=33%  Similarity=0.409  Sum_probs=27.1

Q ss_pred             cEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCC
Q 041168           54 HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFN   92 (177)
Q Consensus        54 ~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~   92 (177)
                      ++++|++++|+++ .+++  .+.+++.|+.|++++|.++
T Consensus         2 ~L~~L~l~~N~i~-~l~~--~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPP--ELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGG--HGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCc--hHhCCCCCCEEEecCCCCC
Confidence            5778888888888 4565  6888888888888888877

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.79  E-value=5.2e-07  Score=77.35  Aligned_cols=102  Identities=25%  Similarity=0.287  Sum_probs=81.7

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCCh-hhhCCCCCC
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPA-ELLELSDLE  129 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~-~~~~l~~L~  129 (177)
                      ..+.+.++++|.+. .+..  ++.-++.++.|+|++|++...   ..+..++.|++  |+.|.+. .+|. ....+. |+
T Consensus       164 n~L~~a~fsyN~L~-~mD~--SLqll~ale~LnLshNk~~~v---~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~  235 (1096)
T KOG1859|consen  164 NKLATASFSYNRLV-LMDE--SLQLLPALESLNLSHNKFTKV---DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQ  235 (1096)
T ss_pred             hhHhhhhcchhhHH-hHHH--HHHHHHHhhhhccchhhhhhh---HHHHhcccccccccccchhc-cccccchhhhh-he
Confidence            46788999999988 4555  788889999999999999854   37888999999  9999997 5654 223444 99


Q ss_pred             EEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCC
Q 041168          130 SLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAS  169 (177)
Q Consensus       130 ~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g  169 (177)
                      .|.|++|  .+   + . -..+.+|++|+.||+++|-|++
T Consensus       236 ~L~lrnN--~l---~-t-L~gie~LksL~~LDlsyNll~~  268 (1096)
T KOG1859|consen  236 LLNLRNN--AL---T-T-LRGIENLKSLYGLDLSYNLLSE  268 (1096)
T ss_pred             eeeeccc--HH---H-h-hhhHHhhhhhhccchhHhhhhc
Confidence            9999999  44   2 2 2357899999999999998875

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.72  E-value=2.8e-05  Score=69.45  Aligned_cols=105  Identities=30%  Similarity=0.373  Sum_probs=80.5

Q ss_pred             CCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCC
Q 041168           52 NGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLE  129 (177)
Q Consensus        52 ~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~  129 (177)
                      .+.+++||+++|.-.+.+|.  .++.+-+|++|++++..+. . +|..+..+..|.+  +..+.....+|.....+.+|+
T Consensus       570 m~~LrVLDLs~~~~l~~LP~--~I~~Li~LryL~L~~t~I~-~-LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr  645 (889)
T KOG4658|consen  570 LPLLRVLDLSGNSSLSKLPS--SIGELVHLRYLDLSDTGIS-H-LPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLR  645 (889)
T ss_pred             CcceEEEECCCCCccCcCCh--HHhhhhhhhcccccCCCcc-c-cchHHHHHHhhheeccccccccccccchhhhccccc
Confidence            47899999999877678999  9999999999999999998 5 9999999999999  776665545566667799999


Q ss_pred             EEeCCCCcCCcccCCCchhHHhhcCCCCCEEEee
Q 041168          130 SLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLG  163 (177)
Q Consensus       130 ~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls  163 (177)
                      +|.+-.-....   ....-..+..+.+|+.+...
T Consensus       646 ~L~l~~s~~~~---~~~~l~el~~Le~L~~ls~~  676 (889)
T KOG4658|consen  646 VLRLPRSALSN---DKLLLKELENLEHLENLSIT  676 (889)
T ss_pred             EEEeecccccc---chhhHHhhhcccchhhheee
Confidence            99885542122   33334445566666666553

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.66  E-value=2e-05  Score=64.93  Aligned_cols=102  Identities=29%  Similarity=0.297  Sum_probs=60.0

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      .+++.|++..|.+.... .  .+..+++|++|++++|.|+..   ..+..++.|+.  +++|.+.. + ..+..++.|+.
T Consensus        95 ~~l~~l~l~~n~i~~i~-~--~l~~~~~L~~L~ls~N~I~~i---~~l~~l~~L~~L~l~~N~i~~-~-~~~~~l~~L~~  166 (414)
T KOG0531|consen   95 KSLEALDLYDNKIEKIE-N--LLSSLVNLQVLDLSFNKITKL---EGLSTLTLLKELNLSGNLISD-I-SGLESLKSLKL  166 (414)
T ss_pred             cceeeeeccccchhhcc-c--chhhhhcchheeccccccccc---cchhhccchhhheeccCcchh-c-cCCccchhhhc
Confidence            45677777777766432 1  255667777777777777632   23455555666  67777652 2 33445667777


Q ss_pred             EeCCCCcCCcccCCCchhHH-hhcCCCCCEEEeecccCC
Q 041168          131 LDLSFNNFHLKLQGPSLANL-AEKLANLKVLHLGQVNTA  168 (177)
Q Consensus       131 L~Ls~N~~~l~~~~~~~p~~-~~~l~~L~~L~Ls~N~l~  168 (177)
                      +++++|.  +    ..+... ...+.+++.+++.+|.+.
T Consensus       167 l~l~~n~--i----~~ie~~~~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  167 LDLSYNR--I----VDIENDELSELISLEELDLGGNSIR  199 (414)
T ss_pred             ccCCcch--h----hhhhhhhhhhccchHHHhccCCchh
Confidence            7777773  2    112221 355666777777777654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.50  E-value=1.8e-05  Score=64.31  Aligned_cols=40  Identities=30%  Similarity=0.216  Sum_probs=20.5

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCC
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFN   92 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~   92 (177)
                      ++++.|||+.|-+....+-..-...+++|+.|+|+.|++.
T Consensus       146 ~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~  185 (505)
T KOG3207|consen  146 PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLS  185 (505)
T ss_pred             CcceeecchhhhHHhHHHHHHHHHhcccchhccccccccc
Confidence            4566666666655432210002344566666666666654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.46  E-value=0.00013  Score=53.87  Aligned_cols=102  Identities=26%  Similarity=0.258  Sum_probs=70.5

Q ss_pred             cEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCC--CCChhhhCCCCCC
Q 041168           54 HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFG--QIPAELLELSDLE  129 (177)
Q Consensus        54 ~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~--~~p~~~~~l~~L~  129 (177)
                      ....+||++|.+.. ++   .|..++.|.+|.|.+|.|+.. .|.--..+++|..  |.+|++..  .+ ..+..++.|+
T Consensus        43 ~~d~iDLtdNdl~~-l~---~lp~l~rL~tLll~nNrIt~I-~p~L~~~~p~l~~L~LtnNsi~~l~dl-~pLa~~p~L~  116 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRK-LD---NLPHLPRLHTLLLNNNRITRI-DPDLDTFLPNLKTLILTNNSIQELGDL-DPLASCPKLE  116 (233)
T ss_pred             ccceecccccchhh-cc---cCCCccccceEEecCCcceee-ccchhhhccccceEEecCcchhhhhhc-chhccCCccc
Confidence            56789999998873 33   477788999999999999964 4443345667888  88888762  22 2357888999


Q ss_pred             EEeCCCCcCCcccCCCch-hHHhhcCCCCCEEEeec
Q 041168          130 SLDLSFNNFHLKLQGPSL-ANLAEKLANLKVLHLGQ  164 (177)
Q Consensus       130 ~L~Ls~N~~~l~~~~~~~-p~~~~~l~~L~~L~Ls~  164 (177)
                      +|.+-+|++.-   .... --.+..+++|+.||.+.
T Consensus       117 ~Ltll~Npv~~---k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  117 YLTLLGNPVEH---KKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             eeeecCCchhc---ccCceeEEEEecCcceEeehhh
Confidence            99998884311   0000 12356788999998764

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.45  E-value=4.9e-05  Score=61.90  Aligned_cols=108  Identities=25%  Similarity=0.140  Sum_probs=51.4

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCC--ccccCCccccc--cccccCCCC-CChh-----h
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIP--SEIKNLSRLTA--LSNPSFFGQ-IPAE-----L  122 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p--~~~~~l~~L~~--ls~n~l~~~-~p~~-----~  122 (177)
                      +.+..|++.+|........  ....+..|+.|+|++|.+..  .+  ...+.++.|+.  ++.+.+... .|+.     .
T Consensus       222 Psl~~L~L~~N~~~~~~~~--~~~i~~~L~~LdLs~N~li~--~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt  297 (505)
T KOG3207|consen  222 PSLEVLYLEANEIILIKAT--STKILQTLQELDLSNNNLID--FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKT  297 (505)
T ss_pred             CcHHHhhhhcccccceecc--hhhhhhHHhhccccCCcccc--cccccccccccchhhhhccccCcchhcCCCccchhhh
Confidence            4455555555531111111  23344556666666666542  22  33445555555  555555421 1221     2


Q ss_pred             hCCCCCCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCC
Q 041168          123 LELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTA  168 (177)
Q Consensus       123 ~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~  168 (177)
                      ..+++|++|+++.|++.-    ...-..+..+++|+.|.+..|.++
T Consensus       298 ~~f~kL~~L~i~~N~I~~----w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  298 HTFPKLEYLNISENNIRD----WRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             cccccceeeecccCcccc----ccccchhhccchhhhhhccccccc
Confidence            455666666666664321    111223445556666666666554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.40  E-value=0.00015  Score=55.37  Aligned_cols=59  Identities=29%  Similarity=0.255  Sum_probs=28.3

Q ss_pred             cccCcCCcEEEccCC--CCCCCCCCccccCCccccc--cccccCCCCCCh---hhhCCCCCCEEeCCCC
Q 041168           75 LFQLVHLEWLVLSNN--HFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPA---ELLELSDLESLDLSFN  136 (177)
Q Consensus        75 l~~l~~L~~L~Ls~n--~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~---~~~~l~~L~~L~Ls~N  136 (177)
                      +..++.|+.|.++.|  .+.+. ++-..-.+++|++  +++|++..  +.   .+..+.+|..|++.+|
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~-l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~  126 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGG-LEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNC  126 (260)
T ss_pred             CCCcchhhhhcccCCccccccc-ceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccC
Confidence            445556666666666  33332 3322333455555  56665541  11   1234444555555555

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.38  E-value=3.8e-05  Score=63.27  Aligned_cols=102  Identities=27%  Similarity=0.253  Sum_probs=77.1

Q ss_pred             cEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEE
Q 041168           54 HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESL  131 (177)
Q Consensus        54 ~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L  131 (177)
                      .+..+.+..|.+.. +-.  .+..+++|+.|++..|.|..  +...+..+++|++  +++|.|...  ..+..++.|+.|
T Consensus        73 ~l~~l~l~~n~i~~-~~~--~l~~~~~l~~l~l~~n~i~~--i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L  145 (414)
T KOG0531|consen   73 SLKELNLRQNLIAK-ILN--HLSKLKSLEALDLYDNKIEK--IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKEL  145 (414)
T ss_pred             hHHhhccchhhhhh-hhc--ccccccceeeeeccccchhh--cccchhhhhcchheeccccccccc--cchhhccchhhh
Confidence            45556677777663 223  47888999999999999984  4444788999999  999999844  346778889999


Q ss_pred             eCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCC
Q 041168          132 DLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAS  169 (177)
Q Consensus       132 ~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g  169 (177)
                      ++++|.+.      .+ ..+..++.|+.+++++|.+..
T Consensus       146 ~l~~N~i~------~~-~~~~~l~~L~~l~l~~n~i~~  176 (414)
T KOG0531|consen  146 NLSGNLIS------DI-SGLESLKSLKLLDLSYNRIVD  176 (414)
T ss_pred             eeccCcch------hc-cCCccchhhhcccCCcchhhh
Confidence            99999432      22 335568999999999999874

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.30  E-value=0.00042  Score=51.34  Aligned_cols=84  Identities=20%  Similarity=0.170  Sum_probs=63.5

Q ss_pred             cCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhhcCCC
Q 041168           79 VHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLAN  156 (177)
Q Consensus        79 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~  156 (177)
                      .....+||++|.+.   ....|..++.|.+  +.+|+|...-|.--..+++|..|.|.+|.|.-   .+.+ +.+..+++
T Consensus        42 d~~d~iDLtdNdl~---~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~---l~dl-~pLa~~p~  114 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLR---KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQE---LGDL-DPLASCPK  114 (233)
T ss_pred             cccceecccccchh---hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhh---hhhc-chhccCCc
Confidence            46678999999987   3356788899999  89999985555544566789999999995432   2222 23678899


Q ss_pred             CCEEEeecccCCC
Q 041168          157 LKVLHLGQVNTAS  169 (177)
Q Consensus       157 L~~L~Ls~N~l~g  169 (177)
                      |++|-+-+|+++.
T Consensus       115 L~~Ltll~Npv~~  127 (233)
T KOG1644|consen  115 LEYLTLLGNPVEH  127 (233)
T ss_pred             cceeeecCCchhc
Confidence            9999999998763

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.23  E-value=0.00023  Score=62.27  Aligned_cols=112  Identities=18%  Similarity=0.201  Sum_probs=75.9

Q ss_pred             CCcEEEEEccCCcccc-ccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCC-CCChhhhCCCC
Q 041168           52 NGHVIRLDLTSSCLYG-SINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFG-QIPAELLELSD  127 (177)
Q Consensus        52 ~~~l~~L~l~~n~l~~-~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~-~~p~~~~~l~~  127 (177)
                      -|.++.|.+.+-.+.. ....  ...++++|+.||+|+..++.  + ..++.+++|+.  +.+=.+.. ..-..+..|++
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~--lc~sFpNL~sLDIS~TnI~n--l-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~  221 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQ--LCASFPNLRSLDISGTNISN--L-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKK  221 (699)
T ss_pred             CcccceEEecCceecchhHHH--HhhccCccceeecCCCCccC--c-HHHhccccHHHHhccCCCCCchhhHHHHhcccC
Confidence            3788888888876642 2223  45678999999999999983  3 67889999999  44433331 11135678999


Q ss_pred             CCEEeCCCCcCCcccCCCchh----HHhhcCCCCCEEEeecccCCCCC
Q 041168          128 LESLDLSFNNFHLKLQGPSLA----NLAEKLANLKVLHLGQVNTASTV  171 (177)
Q Consensus       128 L~~L~Ls~N~~~l~~~~~~~p----~~~~~l~~L~~L~Ls~N~l~g~~  171 (177)
                      |++||+|......   ...+.    +.-..+|+|+.||.|+..+.+.+
T Consensus       222 L~vLDIS~~~~~~---~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~  266 (699)
T KOG3665|consen  222 LRVLDISRDKNND---DTKIIEQYLECGMVLPELRFLDCSGTDINEEI  266 (699)
T ss_pred             CCeeecccccccc---chHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence            9999999873211   11122    12235899999999998776543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.18  E-value=9.8e-05  Score=58.57  Aligned_cols=40  Identities=23%  Similarity=0.165  Sum_probs=24.7

Q ss_pred             CcEEEEEccCCccccccCCC--cccccCcCCcEEEccCCCCC
Q 041168           53 GHVIRLDLTSSCLYGSINSS--SSLFQLVHLEWLVLSNNHFN   92 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~--~~l~~l~~L~~L~Ls~n~l~   92 (177)
                      ++++.|+||.|.+....+..  .-+..+..|++|.|.+|.+.
T Consensus        92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg  133 (382)
T KOG1909|consen   92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG  133 (382)
T ss_pred             CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence            58999999999876332220  01334566777777766664

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.82  E-value=0.0043  Score=51.01  Aligned_cols=14  Identities=14%  Similarity=-0.021  Sum_probs=8.7

Q ss_pred             CcEEEEEccCCccc
Q 041168           53 GHVIRLDLTSSCLY   66 (177)
Q Consensus        53 ~~l~~L~l~~n~l~   66 (177)
                      .+++.|+++++.++
T Consensus        52 ~~l~~L~Is~c~L~   65 (426)
T PRK15386         52 RASGRLYIKDCDIE   65 (426)
T ss_pred             cCCCEEEeCCCCCc
Confidence            34567777766555

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.82  E-value=0.00033  Score=32.98  Aligned_cols=20  Identities=30%  Similarity=0.519  Sum_probs=14.5

Q ss_pred             CCCEEEeecccCCCCCCcccc
Q 041168          156 NLKVLHLGQVNTASTVPYALA  176 (177)
Q Consensus       156 ~L~~L~Ls~N~l~g~~p~~l~  176 (177)
                      +|++|||++|+|+ .+|.+++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTT
T ss_pred             CccEEECCCCcCE-eCChhhc
Confidence            4677888888777 6777665

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=96.70  E-value=0.00026  Score=56.23  Aligned_cols=112  Identities=19%  Similarity=0.214  Sum_probs=67.0

Q ss_pred             CcEEEEEccCCcccc--c--cCCCcccccCcCCcEEEccCCCCCCC---CCCccccCCccccc--cccccCCCCCChhh-
Q 041168           53 GHVIRLDLTSSCLYG--S--INSSSSLFQLVHLEWLVLSNNHFNFS---EIPSEIKNLSRLTA--LSNPSFFGQIPAEL-  122 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~--~--~~~~~~l~~l~~L~~L~Ls~n~l~~~---~~p~~~~~l~~L~~--ls~n~l~~~~p~~~-  122 (177)
                      +.+..+.+..|.|..  .  +..  .+..+++|+.|||..|-++..   .+...+..+++|+.  +++|.+...-..+| 
T Consensus       185 ~~leevr~~qN~I~~eG~~al~e--al~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~  262 (382)
T KOG1909|consen  185 PTLEEVRLSQNGIRPEGVTALAE--ALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFV  262 (382)
T ss_pred             cccceEEEecccccCchhHHHHH--HHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHH
Confidence            456666666666541  1  122  456678888888888887632   02244566667777  77777653322222 


Q ss_pred             ----hCCCCCCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccC
Q 041168          123 ----LELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNT  167 (177)
Q Consensus       123 ----~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l  167 (177)
                          ...++|++|.+.+|.+..+. ...+...+...+.|..|+|++|.+
T Consensus       263 ~al~~~~p~L~vl~l~gNeIt~da-~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  263 DALKESAPSLEVLELAGNEITRDA-ALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHhccCCCCceeccCcchhHHHH-HHHHHHHHhcchhhHHhcCCcccc
Confidence                24678888888888543211 112233455678888888888887

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.50  E-value=0.0016  Score=49.86  Aligned_cols=88  Identities=25%  Similarity=0.253  Sum_probs=58.7

Q ss_pred             cccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccc--cCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHH
Q 041168           75 LFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNP--SFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANL  150 (177)
Q Consensus        75 l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n--~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~  150 (177)
                      ...+..|+.|.+.+..++.   -..+..|++|++  ++.|  ++.+.++...-.+++|++|++++|+++.   ...++ .
T Consensus        39 ~d~~~~le~ls~~n~gltt---~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~---lstl~-p  111 (260)
T KOG2739|consen   39 TDEFVELELLSVINVGLTT---LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD---LSTLR-P  111 (260)
T ss_pred             cccccchhhhhhhccceee---cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc---ccccc-h
Confidence            3445566666666666652   235667788888  8888  5665666555667999999999996553   22232 2


Q ss_pred             hhcCCCCCEEEeecccCCC
Q 041168          151 AEKLANLKVLHLGQVNTAS  169 (177)
Q Consensus       151 ~~~l~~L~~L~Ls~N~l~g  169 (177)
                      +..+.+|..|++.+|..++
T Consensus       112 l~~l~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen  112 LKELENLKSLDLFNCSVTN  130 (260)
T ss_pred             hhhhcchhhhhcccCCccc
Confidence            5677788888888886553

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.28  E-value=0.0017  Score=56.95  Aligned_cols=108  Identities=19%  Similarity=0.248  Sum_probs=72.5

Q ss_pred             CcEEEEEccCCccc--cccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCC
Q 041168           53 GHVIRLDLTSSCLY--GSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDL  128 (177)
Q Consensus        53 ~~l~~L~l~~n~l~--~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L  128 (177)
                      .+++.|++++....  ++...  --.-+|+|+.|.+++-.+..........++++|..  +++.+++ .+ .+++.+++|
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~k--ig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknL  197 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKK--IGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNL  197 (699)
T ss_pred             HhhhhcCccccchhhccHHHH--HhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccH
Confidence            57888888886543  22211  12346899999998877753212344567888888  8888887 33 678899999


Q ss_pred             CEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCC
Q 041168          129 ESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTA  168 (177)
Q Consensus       129 ~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~  168 (177)
                      ++|.+.+=.|.    ....-..+.+|++|++||+|.....
T Consensus       198 q~L~mrnLe~e----~~~~l~~LF~L~~L~vLDIS~~~~~  233 (699)
T KOG3665|consen  198 QVLSMRNLEFE----SYQDLIDLFNLKKLRVLDISRDKNN  233 (699)
T ss_pred             HHHhccCCCCC----chhhHHHHhcccCCCeeeccccccc
Confidence            99877554221    1122235678999999999987654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.86  E-value=0.002  Score=50.64  Aligned_cols=81  Identities=28%  Similarity=0.211  Sum_probs=54.3

Q ss_pred             CcEEEEEccCCcccccc--CCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCC-CChhhhCCCC
Q 041168           53 GHVIRLDLTSSCLYGSI--NSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQ-IPAELLELSD  127 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~-~p~~~~~l~~  127 (177)
                      .+|+.+|+.+|.|+.+.  ..  -+.+++.|+.|+|+.|.+... +-.....+.+|++  |.+..+... ....+..+|.
T Consensus        71 ~~v~elDL~~N~iSdWseI~~--ile~lP~l~~LNls~N~L~s~-I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~  147 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGA--ILEQLPALTTLNLSCNSLSSD-IKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK  147 (418)
T ss_pred             hhhhhhhcccchhccHHHHHH--HHhcCccceEeeccCCcCCCc-cccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence            57888999999988542  23  456789999999999998853 3322245667777  555544422 2234566777


Q ss_pred             CCEEeCCCC
Q 041168          128 LESLDLSFN  136 (177)
Q Consensus       128 L~~L~Ls~N  136 (177)
                      ++.|.++.|
T Consensus       148 vtelHmS~N  156 (418)
T KOG2982|consen  148 VTELHMSDN  156 (418)
T ss_pred             hhhhhhccc
Confidence            778877777

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.80  E-value=0.0015  Score=50.91  Aligned_cols=60  Identities=22%  Similarity=0.215  Sum_probs=25.3

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCC
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFG  116 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~  116 (177)
                      +.|++|.|+-|.|+. +.   .+..++.|++|+|..|.|.....-..+.++++|+.  |..|...+
T Consensus        41 p~lEVLsLSvNkIss-L~---pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~  102 (388)
T KOG2123|consen   41 PLLEVLSLSVNKISS-LA---PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCG  102 (388)
T ss_pred             ccceeEEeecccccc-ch---hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCccc
Confidence            344555555554442 11   23444455555555555442101123344444444  44444443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.63  E-value=0.0024  Score=50.17  Aligned_cols=88  Identities=22%  Similarity=0.221  Sum_probs=62.1

Q ss_pred             cCcCCcEEEccCCCCCCCC-CCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhhc
Q 041168           77 QLVHLEWLVLSNNHFNFSE-IPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEK  153 (177)
Q Consensus        77 ~l~~L~~L~Ls~n~l~~~~-~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~  153 (177)
                      ..+.++.++|.+|.|+.+. +-.-+.+++.|++  ++.|.+...+...=..+.+|++|-|.+..+..    ......+..
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w----~~~~s~l~~  144 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSW----TQSTSSLDD  144 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCCh----hhhhhhhhc
Confidence            3578999999999998541 1233567899999  99999874432211355689999998885443    334455778


Q ss_pred             CCCCCEEEeecccCC
Q 041168          154 LANLKVLHLGQVNTA  168 (177)
Q Consensus       154 l~~L~~L~Ls~N~l~  168 (177)
                      +|.+++|+++.|.+.
T Consensus       145 lP~vtelHmS~N~~r  159 (418)
T KOG2982|consen  145 LPKVTELHMSDNSLR  159 (418)
T ss_pred             chhhhhhhhccchhh
Confidence            899999999999543

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.45  E-value=0.0093  Score=26.08  Aligned_cols=13  Identities=31%  Similarity=0.447  Sum_probs=6.7

Q ss_pred             CCCEEEeecccCC
Q 041168          156 NLKVLHLGQVNTA  168 (177)
Q Consensus       156 ~L~~L~Ls~N~l~  168 (177)
                      +|+.|+|++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            5666777777655

...

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.37  E-value=0.0044  Score=29.01  Aligned_cols=19  Identities=53%  Similarity=0.775  Sum_probs=9.5

Q ss_pred             CcEEEccCCCCCCCCCCcccc
Q 041168           81 LEWLVLSNNHFNFSEIPSEIK  101 (177)
Q Consensus        81 L~~L~Ls~n~l~~~~~p~~~~  101 (177)
                      |++|++++|.++ . +|+.|+
T Consensus         2 L~~Ldls~n~l~-~-ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-S-IPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-E-EGTTTT
T ss_pred             ccEEECCCCcCE-e-CChhhc
Confidence            455555555555 3 444433

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.20  E-value=0.0011  Score=51.62  Aligned_cols=96  Identities=24%  Similarity=0.181  Sum_probs=71.5

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCCh--hhhCCCCC
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPA--ELLELSDL  128 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~--~~~~l~~L  128 (177)
                      ..++.|++-++++.++.    -...++.|++|.|+-|+|+..   ..+..++.|+.  |..|.|. .+.+  -+.++++|
T Consensus        19 ~~vkKLNcwg~~L~DIs----ic~kMp~lEVLsLSvNkIssL---~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsL   90 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDIS----ICEKMPLLEVLSLSVNKISSL---APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSL   90 (388)
T ss_pred             HHhhhhcccCCCccHHH----HHHhcccceeEEeeccccccc---hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchh
Confidence            46788888888888543    356789999999999999843   45788899998  9999886 3332  35789999


Q ss_pred             CEEeCCCCcCCcccCCCchh-----HHhhcCCCCCEEE
Q 041168          129 ESLDLSFNNFHLKLQGPSLA-----NLAEKLANLKVLH  161 (177)
Q Consensus       129 ~~L~Ls~N~~~l~~~~~~~p-----~~~~~l~~L~~L~  161 (177)
                      +.|-|..|+  -   .+.-+     ..+.-|++|+.||
T Consensus        91 r~LWL~ENP--C---c~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   91 RTLWLDENP--C---CGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhHhhccCC--c---ccccchhHHHHHHHHcccchhcc
Confidence            999999994  3   22222     2356788888876

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.87  E-value=0.023  Score=27.47  Aligned_cols=19  Identities=26%  Similarity=0.440  Sum_probs=10.9

Q ss_pred             CCCCEEEeecccCCCCCCcc
Q 041168          155 ANLKVLHLGQVNTASTVPYA  174 (177)
Q Consensus       155 ~~L~~L~Ls~N~l~g~~p~~  174 (177)
                      ++|++|+|++|.|. .+|..
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHH
Confidence            45666666666665 34443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.87  E-value=0.023  Score=27.47  Aligned_cols=19  Identities=26%  Similarity=0.440  Sum_probs=10.9

Q ss_pred             CCCCEEEeecccCCCCCCcc
Q 041168          155 ANLKVLHLGQVNTASTVPYA  174 (177)
Q Consensus       155 ~~L~~L~Ls~N~l~g~~p~~  174 (177)
                      ++|++|+|++|.|. .+|..
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHH
Confidence            45666666666665 34443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=94.65  E-value=0.0051  Score=48.46  Aligned_cols=40  Identities=25%  Similarity=0.124  Sum_probs=25.8

Q ss_pred             hCCCCCCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeeccc
Q 041168          123 LELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVN  166 (177)
Q Consensus       123 ~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~  166 (177)
                      ..+++|.+|||+.|. .+   ....-.+|..++.|++|.++.|.
T Consensus       310 ~rcp~l~~LDLSD~v-~l---~~~~~~~~~kf~~L~~lSlsRCY  349 (419)
T KOG2120|consen  310 RRCPNLVHLDLSDSV-ML---KNDCFQEFFKFNYLQHLSLSRCY  349 (419)
T ss_pred             HhCCceeeecccccc-cc---CchHHHHHHhcchheeeehhhhc
Confidence            456777777877763 33   34444556677777777777664

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=94.28  E-value=0.061  Score=42.08  Aligned_cols=38  Identities=18%  Similarity=0.267  Sum_probs=22.3

Q ss_pred             CcEEEEEccCCccccccCCCcc----cccCcCCcEEEccCCCCC
Q 041168           53 GHVIRLDLTSSCLYGSINSSSS----LFQLVHLEWLVLSNNHFN   92 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~----l~~l~~L~~L~Ls~n~l~   92 (177)
                      ++++.++++.|.+....|+  .    +..-+.|.+|.|++|.+.
T Consensus        92 p~l~~v~LSDNAfg~~~~e--~L~d~is~~t~l~HL~l~NnGlG  133 (388)
T COG5238          92 PRLQKVDLSDNAFGSEFPE--ELGDLISSSTDLVHLKLNNNGLG  133 (388)
T ss_pred             CcceeeeccccccCcccch--HHHHHHhcCCCceeEEeecCCCC
Confidence            5667777777766544433  2    233456666777666654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=93.94  E-value=0.027  Score=43.94  Aligned_cols=82  Identities=21%  Similarity=0.312  Sum_probs=44.6

Q ss_pred             CcEEEEEccCCccccc----cCCCcccccCcCCcEEEccCCCCCCC--CCC-------ccccCCccccc--cccccCCCC
Q 041168           53 GHVIRLDLTSSCLYGS----INSSSSLFQLVHLEWLVLSNNHFNFS--EIP-------SEIKNLSRLTA--LSNPSFFGQ  117 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~----~~~~~~l~~l~~L~~L~Ls~n~l~~~--~~p-------~~~~~l~~L~~--ls~n~l~~~  117 (177)
                      ..++.+++++|.|...    +..  .+.+-.+|+..+++.-.....  .++       +.+..++.|+.  ||.|-|...
T Consensus        30 d~~~evdLSGNtigtEA~e~l~~--~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~  107 (388)
T COG5238          30 DELVEVDLSGNTIGTEAMEELCN--VIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE  107 (388)
T ss_pred             cceeEEeccCCcccHHHHHHHHH--HHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence            4677888888877532    222  344556666666655322110  011       23444566666  666666544


Q ss_pred             CChh----hhCCCCCCEEeCCCC
Q 041168          118 IPAE----LLELSDLESLDLSFN  136 (177)
Q Consensus       118 ~p~~----~~~l~~L~~L~Ls~N  136 (177)
                      .|+.    +.+-+.|.+|.+++|
T Consensus       108 ~~e~L~d~is~~t~l~HL~l~Nn  130 (388)
T COG5238         108 FPEELGDLISSSTDLVHLKLNNN  130 (388)
T ss_pred             cchHHHHHHhcCCCceeEEeecC
Confidence            4443    345556666666666

>PRK15386 type III secretion protein GogB; Provisional

Probab=93.92  E-value=0.12  Score=42.69  Aligned_cols=55  Identities=18%  Similarity=0.283  Sum_probs=30.9

Q ss_pred             cccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeCCCC
Q 041168           75 LFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFN  136 (177)
Q Consensus        75 l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N  136 (177)
                      +..+..++.|++++|.++ . +|. +  ..+|+.  ++++.-...+|..+  .++|+.|++++|
T Consensus        48 ~~~~~~l~~L~Is~c~L~-s-LP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-S-LPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-c-cCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence            344567788888888776 3 552 1  123555  55433223555433  246777777766

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.85  E-value=0.0031  Score=48.00  Aligned_cols=80  Identities=20%  Similarity=0.193  Sum_probs=64.9

Q ss_pred             CCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCC
Q 041168           52 NGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLE  129 (177)
Q Consensus        52 ~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~  129 (177)
                      ..++++||++.|++. .+..  .+..++.+..|+++.|.+. . +|..+..+..++.  +..|.. ...|.+++..+.++
T Consensus        41 ~kr~tvld~~s~r~v-n~~~--n~s~~t~~~rl~~sknq~~-~-~~~d~~q~~e~~~~~~~~n~~-~~~p~s~~k~~~~k  114 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLV-NLGK--NFSILTRLVRLDLSKNQIK-F-LPKDAKQQRETVNAASHKNNH-SQQPKSQKKEPHPK  114 (326)
T ss_pred             cceeeeehhhhhHHH-hhcc--chHHHHHHHHHhccHhhHh-h-ChhhHHHHHHHHHHHhhccch-hhCCccccccCCcc
Confidence            468999999999876 3444  5777888899999999998 4 7888888888888  444554 48899999999999


Q ss_pred             EEeCCCCc
Q 041168          130 SLDLSFNN  137 (177)
Q Consensus       130 ~L~Ls~N~  137 (177)
                      ++++..|.
T Consensus       115 ~~e~k~~~  122 (326)
T KOG0473|consen  115 KNEQKKTE  122 (326)
T ss_pred             hhhhccCc
Confidence            99998884

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=93.13  E-value=0.0054  Score=29.24  Aligned_cols=15  Identities=27%  Similarity=0.397  Sum_probs=6.3

Q ss_pred             CCCCEEEeecccCCC
Q 041168          155 ANLKVLHLGQVNTAS  169 (177)
Q Consensus       155 ~~L~~L~Ls~N~l~g  169 (177)
                      ++|++|+|++|+|++
T Consensus         2 ~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    2 PNLETLDLSNNQITD   16 (24)
T ss_dssp             TT-SEEE-TSSBEHH
T ss_pred             CCCCEEEccCCcCCH
Confidence            344555555555443

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=93.08  E-value=0.29  Score=32.93  Aligned_cols=99  Identities=12%  Similarity=0.139  Sum_probs=52.0

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      .+++.+.+.. .+...-..  .|..++.|+.+.+..+ +... -...|..+..|+.  +.. .+.......+..+++|+.
T Consensus        12 ~~l~~i~~~~-~~~~I~~~--~F~~~~~l~~i~~~~~-~~~i-~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~   85 (129)
T PF13306_consen   12 SNLESITFPN-TIKKIGEN--AFSNCTSLKSINFPNN-LTSI-GDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN   85 (129)
T ss_dssp             TT--EEEETS-T--EE-TT--TTTT-TT-SEEEESST-TSCE--TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred             CCCCEEEECC-CeeEeChh--hccccccccccccccc-cccc-ceeeeecccccccccccc-cccccccccccccccccc
Confidence            4678888874 45544444  6788888999998875 5532 2355777767887  544 443233456677889999


Q ss_pred             EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeec
Q 041168          131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQ  164 (177)
Q Consensus       131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~  164 (177)
                      +++..+   +   ...-...|.+. +|+.+.+..
T Consensus        86 i~~~~~---~---~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   86 IDIPSN---I---TEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             EEETTT-------BEEHTTTTTT--T--EEE-TT
T ss_pred             cccCcc---c---cEEchhhhcCC-CceEEEECC
Confidence            988665   1   11123346665 888888765

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=92.42  E-value=0.0064  Score=47.92  Aligned_cols=87  Identities=23%  Similarity=0.224  Sum_probs=63.1

Q ss_pred             CCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhhcCCCC
Q 041168           80 HLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANL  157 (177)
Q Consensus        80 ~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L  157 (177)
                      .|++|||+...|+...+-.-+..+.+|+.  +.++++...+-..+..-.+|+.|+|+.+. .+  ....+.-.+..++.|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s-G~--t~n~~~ll~~scs~L  262 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS-GF--TENALQLLLSSCSRL  262 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccc-cc--chhHHHHHHHhhhhH
Confidence            48889999888873212234566778888  88999988777888888999999998772 22  011233457788999


Q ss_pred             CEEEeecccCCC
Q 041168          158 KVLHLGQVNTAS  169 (177)
Q Consensus       158 ~~L~Ls~N~l~g  169 (177)
                      ..|+|+.+.+..
T Consensus       263 ~~LNlsWc~l~~  274 (419)
T KOG2120|consen  263 DELNLSWCFLFT  274 (419)
T ss_pred             hhcCchHhhccc
Confidence            999999987654

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.64  E-value=0.096  Score=39.00  Aligned_cols=35  Identities=20%  Similarity=0.156  Sum_probs=22.6

Q ss_pred             cEEEEEccCCccccccCCCcccccCcCCcEEEccCCC
Q 041168           54 HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNH   90 (177)
Q Consensus        54 ~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~   90 (177)
                      .|+.+|-++..|...--.  .+..++.|+.|.+.+++
T Consensus       102 ~IeaVDAsds~I~~eGle--~L~~l~~i~~l~l~~ck  136 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLE--HLRDLRSIKSLSLANCK  136 (221)
T ss_pred             eEEEEecCCchHHHHHHH--HHhccchhhhheecccc
Confidence            577777777777654444  56666666666665554

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.61  E-value=0.0046  Score=47.07  Aligned_cols=86  Identities=15%  Similarity=0.096  Sum_probs=70.6

Q ss_pred             ccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHh
Q 041168           74 SLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLA  151 (177)
Q Consensus        74 ~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~  151 (177)
                      .+..+...+.||++.|++-.  +-..|+.++.|..  ++.|.+. .+|..++....+..+++..|  ..    ...|..+
T Consensus        37 ei~~~kr~tvld~~s~r~vn--~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n--~~----~~~p~s~  107 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLVN--LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKN--NH----SQQPKSQ  107 (326)
T ss_pred             hhhccceeeeehhhhhHHHh--hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhcc--ch----hhCCccc
Confidence            56677889999999999863  5556777777777  8888887 78999999999999998877  43    5678889


Q ss_pred             hcCCCCCEEEeecccCC
Q 041168          152 EKLANLKVLHLGQVNTA  168 (177)
Q Consensus       152 ~~l~~L~~L~Ls~N~l~  168 (177)
                      +..++++++++-+|.+.
T Consensus       108 ~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  108 KKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             cccCCcchhhhccCcch
Confidence            99999999999998864

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=88.40  E-value=0.38  Score=23.43  Aligned_cols=15  Identities=40%  Similarity=0.463  Sum_probs=11.4

Q ss_pred             CCCCCEEEeecccCC
Q 041168          154 LANLKVLHLGQVNTA  168 (177)
Q Consensus       154 l~~L~~L~Ls~N~l~  168 (177)
                      +++|+.|+++.|+|+
T Consensus         1 L~~L~~L~L~~NkI~   15 (26)
T smart00365        1 LTNLEELDLSQNKIK   15 (26)
T ss_pred             CCccCEEECCCCccc
Confidence            357788888888875

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=88.05  E-value=0.71  Score=30.95  Aligned_cols=93  Identities=12%  Similarity=0.145  Sum_probs=45.0

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      ..++.+.+..+ +......  .+..+..|+.+.+.. .+... -...|..++.|+.  +..+ +...-...+..+ .|+.
T Consensus        35 ~~l~~i~~~~~-~~~i~~~--~F~~~~~l~~i~~~~-~~~~i-~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~  107 (129)
T PF13306_consen   35 TSLKSINFPNN-LTSIGDN--AFSNCKSLESITFPN-NLKSI-GDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKE  107 (129)
T ss_dssp             TT-SEEEESST-TSCE-TT--TTTT-TT-EEEEETS-TT-EE--TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--E
T ss_pred             ccccccccccc-cccccee--eeecccccccccccc-ccccc-ccccccccccccccccCcc-ccEEchhhhcCC-CceE
Confidence            46888888775 5544344  678888899999976 44322 2345667888888  5443 443334567776 8999


Q ss_pred             EeCCCCcCCcccCCCchhHHhhcCCCCC
Q 041168          131 LDLSFNNFHLKLQGPSLANLAEKLANLK  158 (177)
Q Consensus       131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~  158 (177)
                      +.+..+   +   ...-...|.++++|+
T Consensus       108 i~~~~~---~---~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen  108 INIPSN---I---TKIEENAFKNCTKLK  129 (129)
T ss_dssp             EE-TTB-------SS----GGG------
T ss_pred             EEECCC---c---cEECCccccccccCC
Confidence            988765   1   222334566665553

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=87.43  E-value=0.38  Score=23.47  Aligned_cols=17  Identities=24%  Similarity=0.399  Sum_probs=10.9

Q ss_pred             CCCEEEeecccCCCCCCc
Q 041168          156 NLKVLHLGQVNTASTVPY  173 (177)
Q Consensus       156 ~L~~L~Ls~N~l~g~~p~  173 (177)
                      +|+.|++++|+++ .+|+
T Consensus         3 ~L~~L~vs~N~Lt-~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLT-SLPE   19 (26)
T ss_pred             ccceeecCCCccc-cCcc
Confidence            5666777777766 4554

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=84.66  E-value=0.74  Score=22.64  Aligned_cols=14  Identities=21%  Similarity=0.318  Sum_probs=10.3

Q ss_pred             CCCCEEEeecccCC
Q 041168          155 ANLKVLHLGQVNTA  168 (177)
Q Consensus       155 ~~L~~L~Ls~N~l~  168 (177)
                      ++|++|+|++|.|.
T Consensus         2 ~~L~~LdL~~N~i~   15 (28)
T smart00368        2 PSLRELDLSNNKLG   15 (28)
T ss_pred             CccCEEECCCCCCC
Confidence            46778888888774

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	177
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-28
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-09
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-23
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-12
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  107 bits (270), Expect = 8e-28
 Identities = 47/181 (25%), Positives = 72/181 (39%), Gaps = 27/181 (14%)

Query: 1   RSALLQFKQSLTVVQCSFDDYPSAYPKVASWSQEEENRDCCLWDGIKCNEDNGHVIRLDL 60
              L+ FK  L           +    +  WS    N++ C +DG+ C   +  V  +DL
Sbjct: 14  IHQLISFKDVL--------PDKNL---LPDWS---SNKNPCTFDGVTC--RDDKVTSIDL 57

Query: 61  TSSCLYGSINS-SSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTAL--SNPSFFGQ 117
           +S  L    ++ SSSL  L  LE L LSN+H N   +    K  + LT+L  S  S  G 
Sbjct: 58  SSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN-GSVS-GFKCSASLTSLDLSRNSLSGP 115

Query: 118 IPA--ELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYAL 175
           +     L   S L+ L++S N      +          L +L+VL L   + +       
Sbjct: 116 VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK----LNSLEVLDLSANSISGANVVGW 171

Query: 176 A 176
            
Sbjct: 172 V 172

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 66.9 bits (164), Expect = 1e-13
 Identities = 34/108 (31%), Positives = 44/108 (40%), Gaps = 8/108 (7%)

Query: 58  LDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTAL--SNPSFF 115
           LDL+S+   G I  +        L+ L L NN F   +IP  + N S L +L  S     
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT-GKIPPTLSNCSELVSLHLSFNYLS 431

Query: 116 GQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLG 163
           G IP+ L  LS L  L L  N       G     L   +  L+ L L 
Sbjct: 432 GTIPSSLGSLSKLRDLKLWLNMLE----GEIPQELM-YVKTLETLILD 474

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 66.1 bits (162), Expect = 3e-13
 Identities = 30/122 (24%), Positives = 44/122 (36%), Gaps = 12/122 (9%)

Query: 58  LDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTAL--SNPSFF 115
           LD++S+     I     L     L+ L +S N  +  +    I   + L  L  S+  F 
Sbjct: 205 LDVSSNNFSTGI---PFLGDCSALQHLDISGNKLS-GDFSRAISTCTELKLLNISSNQFV 260

Query: 116 GQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYAL 175
           G IP   L    L+ L L+ N F     G     L+     L  L L   +    VP   
Sbjct: 261 GPIPPLPL--KSLQYLSLAENKFT----GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 314

Query: 176 AN 177
            +
Sbjct: 315 GS 316

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 63.8 bits (156), Expect = 2e-12
 Identities = 35/121 (28%), Positives = 51/121 (42%), Gaps = 16/121 (13%)

Query: 48  CNEDNGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLT 107
           C      +  L L ++   G I    +L     L  L LS N+ +   IPS + +LS+L 
Sbjct: 389 CQNPKNTLQELYLQNNGFTGKI--PPTLSNCSELVSLHLSFNYLS-GTIPSSLGSLSKLR 445

Query: 108 AL--SNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGP---SLANLAEKLANLKVLHL 162
            L        G+IP EL+ +  LE+L L FN+      G     L+N      NL  + L
Sbjct: 446 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDL----TGEIPSGLSN----CTNLNWISL 497

Query: 163 G 163
            
Sbjct: 498 S 498

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 62.2 bits (152), Expect = 5e-12
 Identities = 37/109 (33%), Positives = 51/109 (46%), Gaps = 9/109 (8%)

Query: 58  LDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTAL--SNPSFF 115
           L L  +   G I           L  L LS NHF    +P    + S L +L  S+ +F 
Sbjct: 274 LSLAENKFTGEI-PDFLSGACDTLTGLDLSGNHFY-GAVPPFFGSCSLLESLALSSNNFS 331

Query: 116 GQIPAELL-ELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLG 163
           G++P + L ++  L+ LDLSFN F  +L   SL NL    A+L  L L 
Sbjct: 332 GELPMDTLLKMRGLKVLDLSFNEFSGELP-ESLTNL---SASLLTLDLS 376

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 61.8 bits (151), Expect = 7e-12
 Identities = 25/109 (22%), Positives = 52/109 (47%), Gaps = 15/109 (13%)

Query: 58  LDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFF 115
           L ++ + + G +     + + V+LE+L +S+N+F+ + IP  + + S L    +S     
Sbjct: 183 LAISGNKISGDV----DVSRCVNLEFLDVSSNNFS-TGIPF-LGDCSALQHLDISGNKLS 236

Query: 116 GQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQ 164
           G     +   ++L+ L++S N F   +  P        L +L+ L L +
Sbjct: 237 GDFSRAISTCTELKLLNISSNQFVGPI--PP-----LPLKSLQYLSLAE 278

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 60.3 bits (147), Expect = 2e-11
 Identities = 36/83 (43%), Positives = 41/83 (49%), Gaps = 5/83 (6%)

Query: 58  LDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTAL--SNPSFF 115
           L L  + L G I   S L    +L W+ LSNN     EIP  I  L  L  L  SN SF 
Sbjct: 471 LILDFNDLTGEI--PSGLSNCTNLNWISLSNNRLT-GEIPKWIGRLENLAILKLSNNSFS 527

Query: 116 GQIPAELLELSDLESLDLSFNNF 138
           G IPAEL +   L  LDL+ N F
Sbjct: 528 GNIPAELGDCRSLIWLDLNTNLF 550

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 60.3 bits (147), Expect = 2e-11
 Identities = 38/131 (29%), Positives = 53/131 (40%), Gaps = 30/131 (22%)

Query: 58  LDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHF--------------------NFS-EI 96
           LD++ + L G    S ++     L+ L +S+N F                     F+ EI
Sbjct: 228 LDISGNKLSGDF--SRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEI 285

Query: 97  PSEIK-NLSRLT--ALSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEK 153
           P  +      LT   LS   F+G +P      S LESL LS NNF  +L   +L      
Sbjct: 286 PDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLK---- 341

Query: 154 LANLKVLHLGQ 164
           +  LKVL L  
Sbjct: 342 MRGLKVLDLSF 352

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 59.5 bits (145), Expect = 4e-11
 Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 12/101 (11%)

Query: 55  VIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTAL--SNP 112
               ++TS    G    S +      + +L +S N  +   IP EI ++  L  L   + 
Sbjct: 610 RNPCNITSRVYGGHT--SPTFDNNGSMMFLDMSYNMLS-GYIPKEIGSMPYLFILNLGHN 666

Query: 113 SFFGQIPAELLELSDLESLDLSFNNFHLKLQG---PSLANL 150
              G IP E+ +L  L  LDLS N     L G    +++ L
Sbjct: 667 DISGSIPDEVGDLRGLNILDLSSNK----LDGRIPQAMSAL 703

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 57.6 bits (140), Expect = 2e-10
 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 5/84 (5%)

Query: 58  LDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTAL--SNPSFF 115
           LD++ + L G I     +  + +L  L L +N  +   IP E+ +L  L  L  S+    
Sbjct: 637 LDMSYNMLSGYI--PKEIGSMPYLFILNLGHNDIS-GSIPDEVGDLRGLNILDLSSNKLD 693

Query: 116 GQIPAELLELSDLESLDLSFNNFH 139
           G+IP  +  L+ L  +DLS NN  
Sbjct: 694 GRIPQAMSALTMLTEIDLSNNNLS 717

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 57.2 bits (139), Expect = 2e-10
 Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 5/84 (5%)

Query: 58  LDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTAL--SNPSFF 115
           L L  + L G I     L  +  LE L+L  N     EIPS + N + L  +  SN    
Sbjct: 447 LKLWLNMLEGEI--PQELMYVKTLETLILDFNDLTG-EIPSGLSNCTNLNWISLSNNRLT 503

Query: 116 GQIPAELLELSDLESLDLSFNNFH 139
           G+IP  +  L +L  L LS N+F 
Sbjct: 504 GEIPKWIGRLENLAILKLSNNSFS 527

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 56.1 bits (136), Expect = 6e-10
 Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 10/110 (9%)

Query: 58  LDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSE-IKNLSRLTAL--SNPSF 114
           LDL+ +  YG++           LE L LS+N+F+  E+P + +  +  L  L  S   F
Sbjct: 299 LDLSGNHFYGAV--PPFFGSCSLLESLALSSNNFS-GELPMDTLLKMRGLKVLDLSFNEF 355

Query: 115 FGQIPAELLELS-DLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLG 163
            G++P  L  LS  L +LDLS NNF   +  P+L         L+ L+L 
Sbjct: 356 SGELPESLTNLSASLLTLDLSSNNFSGPIL-PNLCQN--PKNTLQELYLQ 402

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.0 bits (128), Expect = 7e-09
 Identities = 20/120 (16%), Positives = 39/120 (32%), Gaps = 8/120 (6%)

Query: 58  LDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTALSNPSFFGQ 117
           L L+++   G+I   + L     L WL L+ N FN   IP+ +   S    ++     G+
Sbjct: 519 LKLSNNSFSGNI--PAELGDCRSLIWLDLNTNLFN-GTIPAAMFKQSGK--IAANFIAGK 573

Query: 118 IPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYALAN 177
               +      +    + N    +       N   +L+     ++              N
Sbjct: 574 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN---RLSTRNPCNITSRVYGGHTSPTFDN 630

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 91.4 bits (228), Expect = 8e-23
 Identities = 48/173 (27%), Positives = 73/173 (42%), Gaps = 31/173 (17%)

Query: 1   RSALLQFKQSLTVVQCSFDDYPSAYPKVASWSQEEENRDCC--LWDGIKCNED--NGHVI 56
           + ALLQ K+ L       +        ++SW       DCC   W G+ C+ D     V 
Sbjct: 8   KQALLQIKKDLG------NP-----TTLSSWL---PTTDCCNRTWLGVLCDTDTQTYRVN 53

Query: 57  RLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTAL--SNPSF 114
            LDL+   L       SSL  L +L +L +   +     IP  I  L++L  L  ++ + 
Sbjct: 54  NLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNV 113

Query: 115 FGQIPAELLELSDLESLDLSFNNFHLKLQG---PSLANLAEKLANLKVLHLGQ 164
            G IP  L ++  L +LD S+N     L G   PS+++    L NL  +    
Sbjct: 114 SGAIPDFLSQIKTLVTLDFSYNA----LSGTLPPSISS----LPNLVGITFDG 158

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 62.2 bits (152), Expect = 3e-12
 Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 6/85 (7%)

Query: 57  RLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSF 114
            +DL+ + L G    S       + + + L+ N   F  +   +     L    L N   
Sbjct: 201 FVDLSRNMLEGDA--SVLFGSDKNTQKIHLAKNSLAFD-LGK-VGLSKNLNGLDLRNNRI 256

Query: 115 FGQIPAELLELSDLESLDLSFNNFH 139
           +G +P  L +L  L SL++SFNN  
Sbjct: 257 YGTLPQGLTQLKFLHSLNVSFNNLC 281

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 56.4 bits (137), Expect = 3e-10
 Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 18/114 (15%)

Query: 57  RLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA---LSNPS 113
            LD + + L G++    S+  L +L  +    N  +   IP    + S+L     +S   
Sbjct: 129 TLDFSYNALSGTL--PPSISSLPNLVGITFDGNRIS-GAIPDSYGSFSKLFTSMTISRNR 185

Query: 114 FFGQIPAELLELSDLESLDLSFNNFHLKLQG---PSLANLAEKLANLKVLHLGQ 164
             G+IP     L+ L  +DLS N     L+G       +      N + +HL +
Sbjct: 186 LTGKIPPTFANLN-LAFVDLSRN----MLEGDASVLFGS----DKNTQKIHLAK 230

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 66.6 bits (163), Expect = 1e-13
 Identities = 31/177 (17%), Positives = 54/177 (30%), Gaps = 8/177 (4%)

Query: 3   ALLQFKQSLTVVQCSFDDYPSAYPKVASWSQEEENRDCCLWDGIKCNEDNGHVIRLDLTS 62
           AL +   +L     S           A+W+  +E        G+  N  NG V  L L  
Sbjct: 34  ALKEIWDALNGKNWSQ--QGFGTQPGANWNFNKELDMWGAQPGVSLNS-NGRVTGLSLEG 90

Query: 63  SCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTAL--SNPSFFGQIPA 120
               G +    ++ QL  LE L L ++    +E     K +S   +              
Sbjct: 91  FGASGRV--PDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKT 148

Query: 121 ELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYALAN 177
            +      +  DL  +  +   Q  S+   +        +     N  + V  A+  
Sbjct: 149 FVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLS-NNITFVSKAVMR 204

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 10/79 (12%)

Query: 68  SINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTAL--------SNPSFFGQIP 119
            ++       L +L  + LS N  +FS+ P++  N S L                  + P
Sbjct: 502 KLSDDFRATTLPYLVGIDLSYN--SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP 559

Query: 120 AELLELSDLESLDLSFNNF 138
             +     L  L +  N+ 
Sbjct: 560 EGITLCPSLTQLQIGSNDI 578

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 18/115 (15%), Positives = 42/115 (36%), Gaps = 23/115 (20%)

Query: 72  SSSLFQLVHLEWLVLSNNHF------------------NFSEIPSEIKNLSRLT--ALSN 111
           S ++ +L  L    + N+ F                   +     +  NL  LT   + N
Sbjct: 199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYN 258

Query: 112 PSFFGQIPAELLELSDLESLDLSFNNFHLKLQGP-SLANLAE--KLANLKVLHLG 163
                ++P  L  L +++ ++++ N      Q       LA+      ++++++G
Sbjct: 259 CPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIG 313

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.0 bits (120), Expect = 8e-08
 Identities = 14/103 (13%), Positives = 35/103 (33%), Gaps = 10/103 (9%)

Query: 65  LYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTAL--SNPSFFGQIPAEL 122
           L     + +       ++ + +  N+     + + ++ + +L  L        G++P   
Sbjct: 291 LKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AF 349

Query: 123 LELSDLESLDLSFNNFHLKLQGPSL-ANLAEKLANLKVLHLGQ 164
                L SL+L++N          + AN       ++ L    
Sbjct: 350 GSEIKLASLNLAYNQIT------EIPANFCGFTEQVENLSFAH 386

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 21/112 (18%), Positives = 36/112 (32%), Gaps = 14/112 (12%)

Query: 60  LTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTALS--------- 110
           + S           + F+ +++  + LSNN  +           S L++++         
Sbjct: 414 IGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEI 472

Query: 111 NPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHL 162
             +              L S+DL FN    KL   S    A  L  L  + L
Sbjct: 473 PKNSLKDENENFKNTYLLTSIDLRFN----KLTKLSDDFRATTLPYLVGIDL 520

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 16/106 (15%), Positives = 28/106 (26%), Gaps = 10/106 (9%)

Query: 68  SINSSSSLFQLVHLEWLVLSNNHF------NFSEIPSEIKNLSRLTA--LSNPSFFGQIP 119
            I +      +  +  +  S N        NF  +         +++  LSN        
Sbjct: 391 YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK 450

Query: 120 AELLELSDLESLDLSFNNFH--LKLQGPSLANLAEKLANLKVLHLG 163
                 S L S++L  N      K          +    L  + L 
Sbjct: 451 ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLR 496

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 11/136 (8%), Positives = 35/136 (25%), Gaps = 16/136 (11%)

Query: 57  RLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTALS-NPSFF 115
           +          +            L    ++++      I    +   + T +    +  
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSD-PQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 116 GQIPAELLELSDLESLDLSFNNF-------HLKLQGPSLANLAE-------KLANLKVLH 161
             +   ++ L+ L    +  + F         + +    A   +        L +L  + 
Sbjct: 196 TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVE 255

Query: 162 LGQVNTASTVPYALAN 177
           +      + +P  L  
Sbjct: 256 VYNCPNLTKLPTFLKA 271

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 16/103 (15%), Positives = 39/103 (37%), Gaps = 18/103 (17%)

Query: 72  SSSLFQLVHLEWLVLSNNHFNFSEIPS--EIKNLSRLTALS---------NPSFFGQIPA 120
           ++       +E L  ++N      IP+  + K++S ++A+          +   F  +  
Sbjct: 370 ANFCGFTEQVENLSFAHNKL--KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDP 427

Query: 121 ELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLG 163
              +  ++ S++LS N    K      +      + L  ++L 
Sbjct: 428 TPFKGINVSSINLSNNQIS-KFPKELFST----GSPLSSINLM 465

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 61.0 bits (148), Expect = 1e-11
 Identities = 26/185 (14%), Positives = 57/185 (30%), Gaps = 17/185 (9%)

Query: 1   RSALLQFKQSLTVVQCSF-DDYPSAYPKVASWSQEEENRDCCLWDGIKCNE--DNGHVIR 57
             AL    ++L      +     +      +W+    N++  +W      +  +NG V  
Sbjct: 271 YKALKAIWEALDGKNWRYYSGTINNTIHSLNWN---FNKELDMWGDQPGVDLDNNGRVTG 327

Query: 58  LDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTALSNPSFF-- 115
           L L      G +    ++ QL  L+ L    +  + +       +      +S       
Sbjct: 328 LSLAGFGAKGRV--PDAIGQLTELKVLSFGTH--SETVSGRLFGDEELTPDMSEERKHRI 383

Query: 116 --GQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQV-NTASTVP 172
                   L     L   DL  +  +   +   +   +    +LK   +G + N  + + 
Sbjct: 384 RMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDS--RISLKDTQIGNLTNRITFIS 441

Query: 173 YALAN 177
            A+  
Sbjct: 442 KAIQR 446

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 55.3 bits (133), Expect = 1e-09
 Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 11/89 (12%)

Query: 58  LDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTAL-------- 109
           +DL  + L  S++       L +L  + +S N   FS  P++  N S+L A         
Sbjct: 733 IDLRFNKL-TSLSDDFRATTLPYLSNMDVSYN--CFSSFPTQPLNSSQLKAFGIRHQRDA 789

Query: 110 SNPSFFGQIPAELLELSDLESLDLSFNNF 138
                  Q P  +     L  L +  N+ 
Sbjct: 790 EGNRILRQWPTGITTCPSLIQLQIGSNDI 818

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.7 bits (129), Expect = 5e-09
 Identities = 26/136 (19%), Positives = 52/136 (38%), Gaps = 28/136 (20%)

Query: 56  IRLDLTSSCLYGSINS----SSSLFQLVHLEWLVLSNNHFN------------------F 93
            R+ L  + +    N     S ++ +L  L+ +  +N+ F                   +
Sbjct: 421 SRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480

Query: 94  SEIPSEIKNLSRLTAL--SNPSFFGQIPAELLELSDLESLDLSFNNF----HLKLQGPSL 147
                   NL  LT +   N     Q+P  L +L +L+SL+++ N       LK     L
Sbjct: 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRL 540

Query: 148 ANLAEKLANLKVLHLG 163
           A+  +    +++ ++G
Sbjct: 541 ADDEDTGPKIQIFYMG 556

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 47.9 bits (114), Expect = 4e-07
 Identities = 21/119 (17%), Positives = 37/119 (31%), Gaps = 15/119 (12%)

Query: 68  SINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTALS---------NPSFFGQI 118
           +I+ S   ++ ++   + LS N              S ++ +            +     
Sbjct: 662 NISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPK 720

Query: 119 PAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYALAN 177
                    L ++DL FN    KL   S    A  L  L  + +   N  S+ P    N
Sbjct: 721 DGNYKNTYLLTTIDLRFN----KLTSLSDDFRATTLPYLSNMDVSY-NCFSSFPTQPLN 774

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 38.3 bits (89), Expect = 8e-04
 Identities = 15/107 (14%), Positives = 27/107 (25%), Gaps = 14/107 (13%)

Query: 68  SINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEI---------KNLSRLTALSNPSFFGQI 118
            I +  +   +  +  +  S N          I          N S +T LS        
Sbjct: 633 YIPNIFNAKSVYVMGSVDFSYN--KIGSEGRNISCSMDDYKGINASTVT-LSYNEIQKFP 689

Query: 119 PAELLELSDLESLDLSFNNFHL--KLQGPSLANLAEKLANLKVLHLG 163
                  S + ++ LS N      +          +    L  + L 
Sbjct: 690 TELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLR 736

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 37.9 bits (88), Expect = 9e-04
 Identities = 12/131 (9%), Positives = 31/131 (23%), Gaps = 28/131 (21%)

Query: 57  RLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTAL------- 109
           R    +         +        ++   +  N+       + ++ + +L  L       
Sbjct: 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV 585

Query: 110 SNPSFFGQ----------------IPAELLE-LSDLESLDLSFNNFHLKLQGPSLANLAE 152
            +   FG                 IP +       +E L  S N         +  +   
Sbjct: 586 RHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKS--- 642

Query: 153 KLANLKVLHLG 163
            +  +  +   
Sbjct: 643 -VYVMGSVDFS 652

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 9/109 (8%)

Query: 57  RLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTAL--SNPSF 114
            LDL+   +        +   L HL  L+L+ N    S        LS L  L     + 
Sbjct: 56  VLDLSRCEIQTIE--DGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNL 112

Query: 115 FGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLG 163
                  +  L  L+ L+++ N     +Q   L      L NL+ L L 
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNL----IQSFKLPEYFSNLTNLEHLDLS 157

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.4 bits (121), Expect = 5e-08
 Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 8/109 (7%)

Query: 58  LDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTAL--SNPSFF 115
           L +  +    +        +L +L +L LS         P+   +LS L  L  S+ +FF
Sbjct: 450 LKMAGNSFQENFLPDI-FTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFF 507

Query: 116 GQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQ 164
                    L+ L+ LD S N+    +       L    ++L  L+L Q
Sbjct: 508 SLDTFPYKCLNSLQVLDYSLNH----IMTSKKQELQHFPSSLAFLNLTQ 552

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 47.7 bits (114), Expect = 5e-07
 Identities = 29/108 (26%), Positives = 42/108 (38%), Gaps = 9/108 (8%)

Query: 57  RLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTAL--SNPSF 114
            LD++ +    + N       L  LE L ++ N F  + +P     L  LT L  S    
Sbjct: 425 YLDISHTHTRVAFNGI--FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482

Query: 115 FGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHL 162
               P     LS L+ L++S NNF   L           L +L+VL  
Sbjct: 483 EQLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKC----LNSLQVLDY 525

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.9 bits (112), Expect = 8e-07
 Identities = 24/116 (20%), Positives = 36/116 (31%), Gaps = 8/116 (6%)

Query: 65  LYGSINSSSSLFQLVHLEWLVLSNNHFNFSE-IPSEIKNLSRLTAL--SNPSFFGQIPAE 121
                 ++ S   L  LE+L LS N  +F           + L  L  S       + + 
Sbjct: 333 TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSN 391

Query: 122 LLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYALAN 177
            L L  LE LD   +N     +     +    L NL  L +   +T          
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLS----LRNLIYLDISHTHTRVAFNGIFNG 443

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 27/107 (25%), Positives = 42/107 (39%), Gaps = 9/107 (8%)

Query: 58  LDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTAL--SNPSFF 115
           LDL+ + +      SS+   L  LE L   +++       S   +L  L  L  S+    
Sbjct: 378 LDLSFNGVITM---SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434

Query: 116 GQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHL 162
                    LS LE L ++ N+     Q   L ++  +L NL  L L
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNS----FQENFLPDIFTELRNLTFLDL 477

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 10/108 (9%)

Query: 58  LDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTAL--SNPSFF 115
           LDL+ + L      S S F    L++L LS N      + S    L +L  L   + +  
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN--GVITMSSNFLGLEQLEHLDFQHSNLK 409

Query: 116 GQIPAELL-ELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHL 162
                 +   L +L  LD+S  +  +   G         L++L+VL +
Sbjct: 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNG-IFNG----LSSLEVLKM 452

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 44.6 bits (106), Expect = 5e-06
 Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 14/111 (12%)

Query: 58  LDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTAL--SNPSFF 115
           L    + L    N    +  L  L+ L +++N     ++P    NL+ L  L  S+    
Sbjct: 105 LVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162

Query: 116 GQIPAELLELSDLE----SLDLSFNNFHLKLQGPSLANLAEKLANLKVLHL 162
                +L  L  +     SLDLS N  +  +Q  +   +      L  L L
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEI-----RLHKLTL 207

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 20/100 (20%), Positives = 33/100 (33%), Gaps = 8/100 (8%)

Query: 80  HLEWLVLSNNHFNFSEIPSEIKNLSRLTAL--SNPSFFGQIPAELLELSDLESLDLSFNN 137
             + L LS N            +   L  L  S              LS L +L L+ N 
Sbjct: 29  STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 138 FHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYALAN 177
               L   + +     L++L+ L   + N AS   + + +
Sbjct: 88  IQ-SLALGAFSG----LSSLQKLVAVETNLASLENFPIGH 122

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 6/85 (7%)

Query: 58  LDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTAL--SNPSFF 115
           LDL+   L     ++ +   L  L+ L +S+N+F  S      K L+ L  L  S     
Sbjct: 475 LDLSQCQLEQLSPTAFN--SLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIM 531

Query: 116 GQIPAELLEL-SDLESLDLSFNNFH 139
                EL    S L  L+L+ N+F 
Sbjct: 532 TSKKQELQHFPSSLAFLNLTQNDFA 556

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 18/101 (17%), Positives = 34/101 (33%), Gaps = 6/101 (5%)

Query: 72  SSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTAL-----SNPSFFGQIPAELLELS 126
               F+ + L  L L NN  + + + + I+ L+ L           +       +   L 
Sbjct: 193 QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 252

Query: 127 DLESLDLSFNNF-HLKLQGPSLANLAEKLANLKVLHLGQVN 166
            L +L +      +L      + +L   L N+    L  V 
Sbjct: 253 GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT 293

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 47.6 bits (113), Expect = 5e-07
 Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 13/106 (12%)

Query: 80  HLEWLVLSNNHFNFSEIPSEIKNLSRLTALSNPSFFGQIPAELLELSDLESLDLSFNNF- 138
           H+  LV+ +N  N + +P+    L  L    N      +P     L +L        +  
Sbjct: 62  HITTLVIPDN--NLTSLPALPPELRTLEVSGNQ--LTSLPVLPPGLLELSIFSNPLTHLP 117

Query: 139 -------HLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYALAN 177
                   L + G  L +L      L+ L +   N  +++P   + 
Sbjct: 118 ALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSD-NQLASLPALPSE 162

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.1 bits (104), Expect = 8e-06
 Identities = 21/98 (21%), Positives = 35/98 (35%), Gaps = 18/98 (18%)

Query: 77  QLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTALSNPSFFGQIPAELLELSDLESLDLSFN 136
               L+ L +S+N    + +P+    L +L A +N      +P      S L+ L +S N
Sbjct: 139 LPPGLQELSVSDNQL--ASLPALPSELCKLWAYNNQ--LTSLPM---LPSGLQELSVSDN 191

Query: 137 NF-----------HLKLQGPSLANLAEKLANLKVLHLG 163
                         L      L +L    + LK L + 
Sbjct: 192 QLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVS 229

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 42.6 bits (100), Expect = 2e-05
 Identities = 26/122 (21%), Positives = 42/122 (34%), Gaps = 14/122 (11%)

Query: 65  LYGSINSSSSL-FQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTALSNPSFFGQIPAELL 123
           L  S N  +SL      L  L   NN    + +P     L  L+   N      +P    
Sbjct: 146 LSVSDNQLASLPALPSELCKLWAYNNQL--TSLPMLPSGLQELSVSDNQ--LASLPTLPS 201

Query: 124 ELSDLESLDLSFNNF--------HLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYAL 175
           EL  L + +    +          L + G  L +L    + LK L +   N  +++P   
Sbjct: 202 ELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSG-NRLTSLPMLP 260

Query: 176 AN 177
           + 
Sbjct: 261 SG 262

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 80  HLEWLVLSNNHFNFSEIPSEIKNLSRLTALSNPSFFGQIPAELLELSDLESLDLSFNNF 138
            L+ L++S N    + +P     L  L+   N     ++P  L+ LS   +++L  N  
Sbjct: 242 ELKELMVSGN--RLTSLPMLPSGLLSLSVYRNQ--LTRLPESLIHLSSETTVNLEGNPL 296

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 47.2 bits (113), Expect = 5e-07
 Identities = 29/115 (25%), Positives = 42/115 (36%), Gaps = 14/115 (12%)

Query: 67  GSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTALS-NPSFFGQIPAELLEL 125
            S ++S     LV+L+ L L         +P+ I NL  L +L    S    +   +  L
Sbjct: 171 ASTDASGEHQGLVNLQSLRLEWT--GIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHL 228

Query: 126 SDLESLDLSFNNFHLKLQGPSLANLAE---KLANLKVLHLGQVNTASTVPYALAN 177
             LE LDL            +L N        A LK L L   +   T+P  +  
Sbjct: 229 PKLEELDLRGCT--------ALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR 275

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 46.5 bits (111), Expect = 9e-07
 Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 8/94 (8%)

Query: 73  SSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTAL--SNPSFFGQIPAELLELSDLES 130
            ++  L  LE L L          P      + L  L   + S    +P ++  L+ LE 
Sbjct: 223 PAIHHLPKLEELDLRGCT-ALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEK 281

Query: 131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQ 164
           LDL        L    L +L  +L    ++ +  
Sbjct: 282 LDLRGCV---NLS--RLPSLIAQLPANCIILVPP 310

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 42.6 bits (101), Expect = 2e-05
 Identities = 11/66 (16%), Positives = 26/66 (39%), Gaps = 3/66 (4%)

Query: 73  SSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTAL--SNPSFFGQIPAELLELSDLES 130
                   L+ L+L +   N   +P +I  L++L  L         ++P+ + +L     
Sbjct: 247 PIFGGRAPLKRLILKDCS-NLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI 305

Query: 131 LDLSFN 136
           + +  +
Sbjct: 306 ILVPPH 311

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.9 bits (112), Expect = 8e-07
 Identities = 29/116 (25%), Positives = 42/116 (36%), Gaps = 16/116 (13%)

Query: 57  RLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLS----------RL 106
           RL L    L    +S S    L +L  L LSNN+   +     ++ L            L
Sbjct: 458 RLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA-NINDDMLEGLEKLEILDLQHNNL 516

Query: 107 TALSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHL 162
             L   +  G     L  LS L  L+L  N F  ++      +    L  LK++ L
Sbjct: 517 ARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKD----LFELKIIDL 567

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 26/127 (20%), Positives = 45/127 (35%), Gaps = 13/127 (10%)

Query: 57  RLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEI------KNLSRLTALS 110
            L++  + + G    S+    L++L++L LSN+  +   + +E         L  L  L+
Sbjct: 333 HLNMEDNDIPGIK--SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILN-LT 389

Query: 111 NPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAST 170
                         L  LE LDL  N    +L G         L N+  ++L        
Sbjct: 390 KNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG----LENIFEIYLSYNKYLQL 445

Query: 171 VPYALAN 177
              + A 
Sbjct: 446 TRNSFAL 452

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.0 bits (107), Expect = 4e-06
 Identities = 20/112 (17%), Positives = 36/112 (32%), Gaps = 10/112 (8%)

Query: 54  HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTAL--SN 111
           ++  L+LT + L     ++    +   L  L +  N  +    P   + L  L  L   +
Sbjct: 26  NITVLNLTHNQLRRLPAAN--FTRYSQLTSLDVGFNTIS-KLEPELCQKLPMLKVLNLQH 82

Query: 112 PSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLG 163
                         ++L  L L  N+   K++            NL  L L 
Sbjct: 83  NELSQLSDKTFAFCTNLTELHLMSNSIQ-KIKNNPFVK----QKNLITLDLS 129

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 44.6 bits (106), Expect = 6e-06
 Identities = 19/93 (20%), Positives = 29/93 (31%), Gaps = 7/93 (7%)

Query: 73  SSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTAL--SNPSFFGQIPAELLELSDLES 130
             L  L HL  L L +N F+        K+L  L  +     +      +       L+S
Sbjct: 530 YFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS 588

Query: 131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLG 163
           L+L  N     +             NL  L + 
Sbjct: 589 LNLQKNL----ITSVEKKVFGPAFRNLTELDMR 617

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.8 bits (104), Expect = 9e-06
 Identities = 27/127 (21%), Positives = 45/127 (35%), Gaps = 7/127 (5%)

Query: 54  HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFN-FSEIPSEIKNLSRLTA--LS 110
           ++I LDL+ + L  +   +    QL +L+ L+LSNN          +I   S L    LS
Sbjct: 122 NLITLDLSHNGLSSTKLGT--QVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS 179

Query: 111 NPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAST 170
           +       P     +  L  L L+       L       L     +++ L L     ++T
Sbjct: 180 SNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSL--TEKLCLELANTSIRNLSLSNSQLSTT 237

Query: 171 VPYALAN 177
                  
Sbjct: 238 SNTTFLG 244

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 20/94 (21%), Positives = 30/94 (31%), Gaps = 5/94 (5%)

Query: 71  SSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTAL--SNPSFFGQIPAELLELSDL 128
            S +   L HLE L L  N         E + L  +  +  S   +          +  L
Sbjct: 397 ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSL 456

Query: 129 ESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHL 162
           + L L            S  +  + L NL +L L
Sbjct: 457 QRLMLRRVALK---NVDSSPSPFQPLRNLTILDL 487

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 20/94 (21%), Positives = 32/94 (34%), Gaps = 6/94 (6%)

Query: 71  SSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTAL--SNPSFFGQIPAELLELSDL 128
           S  +     +L  L L +N        +       L  L  S+           ++L +L
Sbjct: 89  SDKTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENL 147

Query: 129 ESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHL 162
           + L LS N     L+   L       ++LK L L
Sbjct: 148 QELLLSNNKIQ-ALKSEELDIF--ANSSLKKLEL 178

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 16/114 (14%)

Query: 58  LDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHF-------NFSEIPSEIKNLSRLTAL- 109
           LDL+++ +    +    L  L  LE L L +N+        N       +K LS L  L 
Sbjct: 485 LDLSNNNIANINDDM--LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN 542

Query: 110 -SNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHL 162
             +  F         +L +L+ +DL  NN +  L      N      +LK L+L
Sbjct: 543 LESNGFDEIPVEVFKDLFELKIIDLGLNNLN-TLPASVFNN----QVSLKSLNL 591

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 21/103 (20%), Positives = 31/103 (30%), Gaps = 17/103 (16%)

Query: 71  SSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTAL-----------SNPSFFGQIP 119
            + S   L  LE+  L  N+         +  L  +  L           S  S      
Sbjct: 264 GNDSFAWLPQLEYFFLEYNNIQ-HLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDD 322

Query: 120 AELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHL 162
                L  LE L++  N+    ++          L NLK L L
Sbjct: 323 FSFQWLKCLEHLNMEDNDIP-GIKSNMFTG----LINLKYLSL 360

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 41.5 bits (98), Expect = 6e-05
 Identities = 26/116 (22%), Positives = 41/116 (35%), Gaps = 11/116 (9%)

Query: 54  HVIRLDLTSSCLYGSINSS-SSLFQLVHLEWLVLSNNHFNFSEIPSEIKNL--SRLTAL- 109
            +  L L +  L  S+            +  L LSN+  + +   +    L  + LT L 
Sbjct: 196 RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS-TTSNTTFLGLKWTNLTMLD 254

Query: 110 -SNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQ 164
            S  +           L  LE   L +NN    L   SL      L N++ L+L +
Sbjct: 255 LSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ-HLFSHSLHG----LFNVRYLNLKR 305

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 8/100 (8%)

Query: 80  HLEWLVLSNNHFNFSEIPSEIKNLSRLTAL--SNPSFFGQIPAELLELSDLESLDLSFNN 137
           ++  L L++N        +     S+LT+L     +     P    +L  L+ L+L  N 
Sbjct: 26  NITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84

Query: 138 FHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYALAN 177
              +L   + A       NL  LHL   +           
Sbjct: 85  LS-QLSDKTFAF----CTNLTELHLMSNSIQKIKNNPFVK 119

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 38.1 bits (89), Expect = 9e-04
 Identities = 15/72 (20%), Positives = 22/72 (30%), Gaps = 4/72 (5%)

Query: 71  SSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLE-LSD 127
                  L  L+ + L  N+ N +   S   N   L +  L                  +
Sbjct: 552 PVEVFKDLFELKIIDLGLNNLN-TLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRN 610

Query: 128 LESLDLSFNNFH 139
           L  LD+ FN F 
Sbjct: 611 LTELDMRFNPFD 622

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 43.8 bits (104), Expect = 9e-06
 Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 11/102 (10%)

Query: 69  INSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTALS---NPSFFGQIPAELLEL 125
           I           L+ L LS+N    + +  E ++ + +T +S   N      I   L   
Sbjct: 181 IYDVKGQVVFAKLKTLDLSSN--KLAFMGPEFQSAAGVTWISLRNNK--LVLIEKALRFS 236

Query: 126 SDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNT 167
            +LE  DL  N FH      +L +   K   ++ +    V  
Sbjct: 237 QNLEHFDLRGNGFHC----GTLRDFFSKNQRVQTVAKQTVKK 274

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 43.8 bits (103), Expect = 1e-05
 Identities = 18/96 (18%), Positives = 32/96 (33%), Gaps = 18/96 (18%)

Query: 80  HLEWLVLSNNHFNFSEIPSEIKNLSRLTALSNPSFFGQIPAELLELSDLESLDLSFNNF- 138
            +  L ++ N      +P    +L  L A  N      +P      + L+ LD+  N   
Sbjct: 81  QITVLEITQNAL--ISLPELPASLEYLDACDNR--LSTLPELP---ASLKHLDVDNNQLT 133

Query: 139 ----------HLKLQGPSLANLAEKLANLKVLHLGQ 164
                     ++      L  L E   +L+VL +  
Sbjct: 134 MLPELPALLEYINADNNQLTMLPELPTSLEVLSVRN 169

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 43.4 bits (102), Expect = 1e-05
 Identities = 22/113 (19%), Positives = 37/113 (32%), Gaps = 20/113 (17%)

Query: 77  QLVHLEWLVLSNNHFNFSEIPSEI-KNLSRLTALSNPSFFGQIPAELLELSDLESLDLSF 135
            +     L L+    N S +P  +   ++ L    N      +P      + LE LD   
Sbjct: 57  LINQFSELQLNRL--NLSSLPDNLPPQITVLEITQNA--LISLPE---LPASLEYLDACD 109

Query: 136 NNF-----------HLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYALAN 177
           N             HL +    L  L E  A L+ ++    N  + +P    +
Sbjct: 110 NRLSTLPELPASLKHLDVDNNQLTMLPELPALLEYINADN-NQLTMLPELPTS 161

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 41.1 bits (96), Expect = 9e-05
 Identities = 18/99 (18%), Positives = 33/99 (33%), Gaps = 18/99 (18%)

Query: 77  QLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTALSNPSFFGQIPAELLELSDLESLDLSFN 136
               LE+L   +N  +   +P    +L  L   +N      +P      + LE ++   N
Sbjct: 98  LPASLEYLDACDNRLS--TLPELPASLKHLDVDNNQ--LTMLPELP---ALLEYINADNN 150

Query: 137 NF-----------HLKLQGPSLANLAEKLANLKVLHLGQ 164
                         L ++   L  L E   +L+ L +  
Sbjct: 151 QLTMLPELPTSLEVLSVRNNQLTFLPELPESLEALDVST 189

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 38.0 bits (88), Expect = 9e-04
 Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 6/86 (6%)

Query: 77  QLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTALSNPSFFGQIPAELLELSDLESLDLSFN 136
               LE L + NN      +P   ++L  L   +N      +PA  +     E  ++ F 
Sbjct: 158 LPTSLEVLSVRNNQLT--FLPELPESLEALDVSTN--LLESLPAVPVRNHHSEETEIFFR 213

Query: 137 NFHLKLQGPSLANLAEKLANLKVLHL 162
               ++    +      L     + L
Sbjct: 214 CRENRIT--HIPENILSLDPTCTIIL 237

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 6/99 (6%)

Query: 68  SINSSSSLFQLVHLEWLVLSNNHFNFSEIPSE-IKNLSRLTALS-NPSFFGQIPAELLEL 125
              ++ S   L  LE+L LS N  +F    S+     + L  L  + +    + +  L L
Sbjct: 336 KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL 395

Query: 126 SDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQ 164
             LE LD   +     L+  S  ++   L NL  L +  
Sbjct: 396 EQLEHLDFQHS----NLKQMSEFSVFLSLRNLIYLDISH 430

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 6/93 (6%)

Query: 72  SSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTAL--SNPSFFGQIPAELLELSDLE 129
           S++   L  L+ L   ++        S   +L +L  L  S  +         L L+ L 
Sbjct: 392 SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLN 451

Query: 130 SLDLSFNNFHLKLQGPSLANLAEKLANLKVLHL 162
           +L ++ N+F         AN      NL  L L
Sbjct: 452 TLKMAGNSFKDNTLSNVFAN----TTNLTFLDL 480

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 22/107 (20%), Positives = 36/107 (33%), Gaps = 9/107 (8%)

Query: 58  LDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTAL--SNPSFF 115
           LD++ +      +       L  L  L ++ N F  + + +   N + LT L  S     
Sbjct: 429 LDISYTNTKIDFDGI--FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE 486

Query: 116 GQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHL 162
                    L  L+ L++S NN    L           L +L  L  
Sbjct: 487 QISWGVFDTLHRLQLLNMSHNNLL-FLDSSHYNQ----LYSLSTLDC 528

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 21/95 (22%), Positives = 30/95 (31%), Gaps = 8/95 (8%)

Query: 71  SSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTAL--SNPSFFGQIPAELLELSDL 128
            S S      L+WL LS       E       L  L+ L  +        P     L+ L
Sbjct: 48  KSYSFSNFSELQWLDLSRCEIETIE-DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL 106

Query: 129 ESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLG 163
           E+L          L+   +      L  LK L++ 
Sbjct: 107 ENLVAVETKLA-SLESFPIGQ----LITLKKLNVA 136

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 38.5 bits (90), Expect = 7e-04
 Identities = 23/112 (20%), Positives = 43/112 (38%), Gaps = 14/112 (12%)

Query: 57  RLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTAL--SNPSF 114
            L    + L    +    + QL+ L+ L +++N  +  ++P+   NL+ L  +  S    
Sbjct: 108 NLVAVETKLASLESFP--IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 165

Query: 115 FGQIPAELLELSDL----ESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHL 162
                 +L  L +      SLD+S N          + + A +   L  L L
Sbjct: 166 QTITVNDLQFLRENPQVNLSLDMSLNPID------FIQDQAFQGIKLHELTL 211

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 38.1 bits (89), Expect = 9e-04
 Identities = 14/71 (19%), Positives = 22/71 (30%), Gaps = 3/71 (4%)

Query: 71  SSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTAL--SNPSFFGQIPAELLELSDL 128
           S      L  L+ L +S+N+       S    L  L+ L  S                 L
Sbjct: 489 SWGVFDTLHRLQLLNMSHNNLL-FLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSL 547

Query: 129 ESLDLSFNNFH 139
              +L+ N+  
Sbjct: 548 AFFNLTNNSVA 558

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 17/121 (14%)

Query: 58  LDLTSSCLYGSINSSSSLF-QLVHLEWLVLSNNHF-NFSEIPSEIKNLSRLTAL--SNPS 113
           LDL+ + +      +S+       L+ LVLS NH  +  +    +  L  LT+L  S  +
Sbjct: 339 LDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISR-N 397

Query: 114 FFGQIPAELLELSDLESLDLSFNNF------------HLKLQGPSLANLAEKLANLKVLH 161
            F  +P        +  L+LS                 L +   +L + +  L  L+ L+
Sbjct: 398 TFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELY 457

Query: 162 L 162
           +
Sbjct: 458 I 458

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 38.2 bits (89), Expect = 7e-04
 Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 8/95 (8%)

Query: 71  SSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTAL--SNPSFFGQIPAELLE-LSD 127
           SSS    L  L++L L  N +    + S   NL+ L  L   N   F +I       L+ 
Sbjct: 90  SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTS 149

Query: 128 LESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHL 162
           L  L++   +     Q  SL +    + ++  L L
Sbjct: 150 LNELEIKALSLR-NYQSQSLKS----IRDIHHLTL 179

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 38.2 bits (89), Expect = 8e-04
 Identities = 24/107 (22%), Positives = 40/107 (37%), Gaps = 13/107 (12%)

Query: 71  SSSSLFQLVHLEWLVLSNNHFNFSEIPSEI-KNLSRLTAL---SNPSFFGQIPAELLE-L 125
               L    +L+ L+L ++    + I  +   +L  L  L    N      + +     L
Sbjct: 42  GHGDLRACANLQVLILKSSRI--NTIEGDAFYSLGSLEHLDLSDNH--LSSLSSSWFGPL 97

Query: 126 SDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVP 172
           S L+ L+L  N +          NL     NL+ L +G V T S + 
Sbjct: 98  SSLKYLNLMGNPYQTLGVTSLFPNLT----NLQTLRIGNVETFSEIR 140

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 18/96 (18%), Positives = 36/96 (37%), Gaps = 14/96 (14%)

Query: 68  SINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTALSNPSFFGQIPAELLELSD 127
            +     L     L+ + + NN     ++P    +L  + A +N     ++P EL  L  
Sbjct: 142 QLEKLPELQNSSFLKIIDVDNNSL--KKLPDLPPSLEFIAAGNN--QLEELP-ELQNLPF 196

Query: 128 LESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLG 163
           L ++    N+         L  L +   +L+ +  G
Sbjct: 197 LTAIYADNNS---------LKKLPDLPLSLESIVAG 223

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 14/95 (14%)

Query: 68  SINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTALSNPSFFGQIPAELLELSD 127
            +     L  L  L  +   NN     ++P    +L  + A +N     ++P EL  L  
Sbjct: 184 QLEELPELQNLPFLTAIYADNNSL--KKLPDLPLSLESIVAGNNI--LEELP-ELQNLPF 238

Query: 128 LESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHL 162
           L ++    N          L  L +   +L+ L++
Sbjct: 239 LTTIYADNNL---------LKTLPDLPPSLEALNV 264

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 38.4 bits (90), Expect = 6e-04
 Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 14/93 (15%)

Query: 80  HLEWLVLSNNHFNFSEIPSEIKNLSRLTALSNPSFFGQIPAELLELSDLESLDLSFNNF- 138
               L L+N     S +P    +L  L A  N     ++P     L  L   + +     
Sbjct: 72  QAHELELNNL--GLSSLPELPPHLESLVASCN--SLTELPELPQSLKSLLVDNNNLKALS 127

Query: 139 -------HLKLQGPSLANLAE--KLANLKVLHL 162
                  +L +    L  L E    + LK++ +
Sbjct: 128 DLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDV 160

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 38.4 bits (90), Expect = 6e-04
 Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 8/93 (8%)

Query: 76  FQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTAL--SNPSFFGQIPAELLELSDLESLDL 133
                L+  +  ++  N +E+P E +N+   T    +   +    P    E  ++    L
Sbjct: 8   VSNTFLQEPLRHSS--NLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRL 65

Query: 134 SFNNF----HLKLQGPSLANLAEKLANLKVLHL 162
                     L+L    L++L E   +L+ L  
Sbjct: 66  RDCLDRQAHELELNNLGLSSLPELPPHLESLVA 98

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 38.1 bits (89), Expect = 9e-04
 Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 19/97 (19%)

Query: 77  QLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTALSNPSFFGQIPAELLELSDLESLDLSFN 136
               LE L +SNN     E+P+    L RL A  N     ++P       +L+ L + +N
Sbjct: 315 LPPSLEELNVSNN--KLIELPALPPRLERLIASFN--HLAEVPE---LPQNLKQLHVEYN 367

Query: 137 NF-----------HLKLQGPSLANLAEKLANLKVLHL 162
                         L++    LA + E   NLK LH+
Sbjct: 368 PLREFPDIPESVEDLRM-NSHLAEVPELPQNLKQLHV 403

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 22/108 (20%), Positives = 38/108 (35%), Gaps = 6/108 (5%)

Query: 57  RLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTAL--SNPSF 114
            L+L+ +        + +  +   LE L L+       +  S  +NL  L  L  S+   
Sbjct: 380 SLNLSYNEP--LSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL 437

Query: 115 FGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHL 162
                     L  L+ L+L  N+           N  + L  L++L L
Sbjct: 438 DISSEQLFDGLPALQHLNLQGNH--FPKGNIQKTNSLQTLGRLEILVL 483

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 22/106 (20%), Positives = 39/106 (36%), Gaps = 7/106 (6%)

Query: 58  LDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTALS-NPSFFG 116
                        +       + +E + L  ++F F+   +     S L  L    +   
Sbjct: 233 GTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF-FNISSNTFHCFSGLQELDLTATHLS 291

Query: 117 QIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHL 162
           ++P+ L+ LS L+ L LS N F   L   S +N      +L  L +
Sbjct: 292 ELPSGLVGLSTLKKLVLSANKFE-NLCQISASN----FPSLTHLSI 332

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 38.5 bits (90), Expect = 7e-04
 Identities = 20/107 (18%), Positives = 34/107 (31%), Gaps = 10/107 (9%)

Query: 58  LDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTAL--SNPSFF 115
           L LT++ L       ++L     L+ L       + S     + N   L +L   +    
Sbjct: 86  LVLTANPLIFMA--ETALSGPKALKHLFFIQTGIS-SIDFIPLHNQKTLESLYLGSNHIS 142

Query: 116 GQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHL 162
                +      L+ LD   N  H  L    +++    L     L L
Sbjct: 143 SIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSS----LQQATNLSL 184

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 38.5 bits (90), Expect = 7e-04
 Identities = 24/108 (22%), Positives = 33/108 (30%), Gaps = 10/108 (9%)

Query: 57  RLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTAL--SNPSF 114
            LDLT   +Y     +        L+ LVL+ N        + +     L  L       
Sbjct: 61  FLDLTRCQIYWIHEDT--FQSQHRLDTLVLTANPLI-FMAETALSGPKALKHLFFIQTGI 117

Query: 115 FGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHL 162
                  L     LESL L  N+    ++ P           LKVL  
Sbjct: 118 SSIDFIPLHNQKTLESLYLGSNHIS-SIKLPKGFP----TEKLKVLDF 160

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 41.7 bits (98), Expect = 5e-05
 Identities = 18/126 (14%), Positives = 40/126 (31%), Gaps = 5/126 (3%)

Query: 57  RLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTALS-NPSFF 115
            L L    L  ++        L  L  L LS N      +      L+ L ++  + +  
Sbjct: 101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160

Query: 116 GQIPAEL---LELSDLESLDLSFNNFHLKLQGPSLANL-AEKLANLKVLHLGQVNTASTV 171
             +       L+   L    L+ N+ + ++       +   +   L++L +        +
Sbjct: 161 FLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDI 220

Query: 172 PYALAN 177
               +N
Sbjct: 221 TGNFSN 226

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 39.0 bits (91), Expect = 4e-04
 Identities = 23/113 (20%), Positives = 47/113 (41%), Gaps = 13/113 (11%)

Query: 57  RLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTALS------ 110
            + L+ + L  +++    L ++ HL+ L+L+ N F+             L  L       
Sbjct: 405 LIHLSENRLE-NLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENML 463

Query: 111 NPSFFGQIPAELLE-LSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHL 162
             ++  ++  ++ E LS L+ L L+ N  +  L     ++    L  L+ L L
Sbjct: 464 QLAWETELCWDVFEGLSHLQVLYLNHNYLN-SLPPGVFSH----LTALRGLSL 511

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 39.0 bits (91), Expect = 5e-04
 Identities = 22/98 (22%), Positives = 34/98 (34%), Gaps = 11/98 (11%)

Query: 71  SSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTAL---SNPSFFGQIPAELLE-LS 126
           ++SS   L  L+ L L + +   +      +NL  L  L   S+      +  +  + L 
Sbjct: 40  TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK--IYFLHPDAFQGLF 97

Query: 127 DLESLDLSFNNF-HLKLQGPSLANLAEKLANLKVLHLG 163
            L  L L F       L+     N    L  L  L L 
Sbjct: 98  HLFELRLYFCGLSDAVLKDGYFRN----LKALTRLDLS 131

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 41.5 bits (98), Expect = 5e-05
 Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 6/95 (6%)

Query: 71  SSSSLFQLVHLEWLVLSNNHFNFSEIPSEI-KNLSRLTALS-NPSFFGQIPAELLELSDL 128
                 +L  L  L LS+N  +F    S+     + L  L  + +    + +  L L  L
Sbjct: 44  PHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQL 103

Query: 129 ESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLG 163
           E LD   +N     +     +    L NL  L + 
Sbjct: 104 EHLDFQHSNLKQMSEFSVFLS----LRNLIYLDIS 134

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 38.1 bits (89), Expect = 7e-04
 Identities = 27/121 (22%), Positives = 44/121 (36%), Gaps = 14/121 (11%)

Query: 57  RLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTAL---SNPS 113
           +L L+S+ L      S S F    L++L LS N      + S    L +L  L    +  
Sbjct: 56  KLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN--GVITMSSNFLGLEQLEHLDFQHSN- 112

Query: 114 FFGQIPAE--LLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTV 171
              Q+      L L +L  LD+S  +                L++L+VL +   +     
Sbjct: 113 -LKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNG----LSSLEVLKMAGNSFQENF 166

Query: 172 P 172
            
Sbjct: 167 L 167

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 41.7 bits (97), Expect = 6e-05
 Identities = 26/132 (19%), Positives = 44/132 (33%), Gaps = 10/132 (7%)

Query: 31  WSQEEENRDCCLWDGIKCNEDNGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNH 90
            +  ++ R   L +      +   V  L L        +     L QL+ +  L LS+N 
Sbjct: 419 AAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKD----LTVLCHLEQLLLVTHLDLSHN- 473

Query: 91  FNFSEIPSEIKNLSRLTALSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANL 150
                +P  +  L  L  L       +    +  L  L+ L L  N      Q  ++  L
Sbjct: 474 -RLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQ---QSAAIQPL 529

Query: 151 AEKLANLKVLHL 162
                 L +L+L
Sbjct: 530 V-SCPRLVLLNL 540

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 41.0 bits (96), Expect = 9e-05
 Identities = 20/103 (19%), Positives = 35/103 (33%), Gaps = 11/103 (10%)

Query: 68  SINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTALS---NPSFFGQIPAELLE 124
            I           L+ L LS+N    + +  E ++ + +T +S   N      I   L  
Sbjct: 180 FIYDVKGQVVFAKLKTLDLSSN--KLAFMGPEFQSAAGVTWISLRNNK--LVLIEKALRF 235

Query: 125 LSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNT 167
             +LE  DL  N         +L +   K   ++ +    V  
Sbjct: 236 SQNLEHFDLRGNG----FHCGTLRDFFSKNQRVQTVAKQTVKK 274

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 9/96 (9%)

Query: 69  INSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTAL--SNPSFFGQIPAELLELS 126
             + + +  L +LE L +       S+    +  L+ LT L  S+ +    I  ++  L 
Sbjct: 78  ATNYNPISGLSNLERLRIMGKDVT-SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP 136

Query: 127 DLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHL 162
            + S+DLS+N          +  L   L  LK L++
Sbjct: 137 KVNSIDLSYNG-----AITDIMPLK-TLPELKSLNI 166

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 37.2 bits (87), Expect = 8e-04
 Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 11/93 (11%)

Query: 73  SSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTALSNPSFFGQI--PAELLELSDLES 130
            +L  L  L  L +S++  + S + ++I  L ++ ++   S+ G I     L  L +L+S
Sbjct: 106 PNLSGLTSLTLLDISHSAHDDSIL-TKINTLPKVNSIDL-SYNGAITDIMPLKTLPELKS 163

Query: 131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLG 163
           L++ F+  H          + E    L  L+  
Sbjct: 164 LNIQFDGVH------DYRGI-EDFPKLNQLYAF 189

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 19/98 (19%), Positives = 34/98 (34%), Gaps = 14/98 (14%)

Query: 69  INSSSSLFQLVHLEWLVLSNNHFNFSEIPSEI-KNLSRLTAL---SNPSFFGQIPAELLE 124
           +  ++ L     L  + LS N     +I       + RL  L   +N      +      
Sbjct: 238 LTDTAWLLNYPGLVEVDLSYN--ELEKIMYHPFVKMQRLERLYISNNR--LVALNLYGQP 293

Query: 125 LSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHL 162
           +  L+ LDLS N+         +     +   L+ L+L
Sbjct: 294 IPTLKVLDLSHNHLL------HVERNQPQFDRLENLYL 325

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 39.0 bits (91), Expect = 4e-04
 Identities = 24/98 (24%), Positives = 32/98 (32%), Gaps = 13/98 (13%)

Query: 71  SSSSLFQLVHLEWLVLSNNHFNFSEIPSEI-KNLSRLTAL--SNPSFFGQIPAELLE-LS 126
            S +   L  L  L L NN      IPS     +  L  L          I     E L 
Sbjct: 139 PSGAFEYLSKLRELWLRNNPI--ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF 196

Query: 127 DLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQ 164
           +L+ L+L   N         + NL   L  L+ L +  
Sbjct: 197 NLKYLNLGMCNIK------DMPNLT-PLVGLEELEMSG 227

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 38.2 bits (89), Expect = 8e-04
 Identities = 25/107 (23%), Positives = 38/107 (35%), Gaps = 14/107 (13%)

Query: 71  SSSSLFQLVHLEWLVLSNNHFNFSEIPSEI-KNLSRLTAL---SNPSFFGQIPAELLE-L 125
            + +   L HLE L L  N     +I       L+ L  L    N  +   IP+   E L
Sbjct: 91  QADTFRHLHHLEVLQLGRNS--IRQIEVGAFNGLASLNTLELFDN--WLTVIPSGAFEYL 146

Query: 126 SDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVP 172
           S L  L L  N     +   +       + +L  L LG++     + 
Sbjct: 147 SKLRELWLRNNPIE-SIPSYAFNR----VPSLMRLDLGELKKLEYIS 188

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 38.9 bits (90), Expect = 5e-04
 Identities = 20/113 (17%), Positives = 43/113 (38%), Gaps = 20/113 (17%)

Query: 54  HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTALSNPS 113
             I+ +L       S+  + +  +L  ++ ++ +N+          ++ +  L  ++   
Sbjct: 22  ETIKDNLKKK----SVTDAVTQNELNSIDQIIANNSDI------KSVQGIQYLPNVTKLF 71

Query: 114 FFG-QIP--AELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLG 163
             G ++     L  L +L  L L  N          L++L + L  LK L L 
Sbjct: 72  LNGNKLTDIKPLTNLKNLGWLFLDENKIK------DLSSL-KDLKKLKSLSLE 117

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 27/97 (27%), Positives = 36/97 (37%), Gaps = 10/97 (10%)

Query: 71  SSSSLFQLVHLEWLVLSNNHFNFSEIPSEI-KNLSRLTALS-NPSFFGQIPAELLE-LSD 127
           +        HLE L L+ N    S +      NL  L  L    +    IP  +   LS+
Sbjct: 48  NQDEFASFPHLEELELNEN--IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSN 105

Query: 128 LESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQ 164
           L  LD+S N     L      +    L NLK L +G 
Sbjct: 106 LTKLDISENKIV-ILLDYMFQD----LYNLKSLEVGD 137

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 38.8 bits (91), Expect = 5e-04
 Identities = 33/98 (33%), Positives = 43/98 (43%), Gaps = 15/98 (15%)

Query: 69  INSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTALSNPSFFGQI--PAELLELS 126
           I     L  L +L  L LS+N        S+I  LS LT+L   SF  Q+     L  L+
Sbjct: 124 ITDIDPLKNLTNLNRLELSSNTI------SDISALSGLTSLQQLSFGNQVTDLKPLANLT 177

Query: 127 DLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQ 164
            LE LD+S N          ++ LA KL NL+ L    
Sbjct: 178 TLERLDISSNKVS------DISVLA-KLTNLESLIATN 208

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 38.4 bits (89), Expect = 6e-04
 Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 14/98 (14%)

Query: 69  INSSSSLFQLVHLEWLVLSNNHFNFSEIPSEI-KNLSRLTALS---NPSFFGQIPAELLE 124
           +  ++ L     L  + LS N     +I       + RL  L    N      +      
Sbjct: 244 LTDTAWLLNYPGLVEVDLSYN--ELEKIMYHPFVKMQRLERLYISNNR--LVALNLYGQP 299

Query: 125 LSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHL 162
           +  L+ LDLS N+         +     +   L+ L+L
Sbjct: 300 IPTLKVLDLSHNHLL------HVERNQPQFDRLENLYL 331

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 38.1 bits (89), Expect = 8e-04
 Identities = 21/98 (21%), Positives = 35/98 (35%), Gaps = 15/98 (15%)

Query: 71  SSSSLFQLVHLEWLVLSNNHFNFSEIPSEI-KNLSRLTAL---SNPSFFGQIPAELLELS 126
                  L +L  L+L NN    S+I       L +L  L    N     ++P ++    
Sbjct: 68  KDGDFKNLKNLHTLILINNK--ISKISPGAFAPLVKLERLYLSKNQ--LKELPEKM--PK 121

Query: 127 DLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQ 164
            L+ L +  N    K++          L  + V+ LG 
Sbjct: 122 TLQELRVHENEIT-KVRKSVFNG----LNQMIVVELGT 154

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	177
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.93
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.87
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.86
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.82
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.81
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.78
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.73
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.73
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.72
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.72
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.71
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.7
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.7
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.67
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.67
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.66
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.65
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.65
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.64
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.63
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.62
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.62
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.62
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.62
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.61
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.6
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.58
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.58
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.58
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.58
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.57
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.57
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.57
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.57
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.57
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.56
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.56
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.56
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.55
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.55
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.55
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.55
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.54
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.54
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.54
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.54
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.53
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.53
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.53
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.52
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.52
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.51
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.51
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.51
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.51
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.49
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.49
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.49
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.48
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.48
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.47
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.47
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.47
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.47
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.47
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.47
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.46
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.46
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.45
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.45
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.45
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.44
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.44
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.44
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.44
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.44
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.44
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.43
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.42
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.42
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.42
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.41
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.41
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.41
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.4
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.4
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.37
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.37
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.37
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.37
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.36
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.36
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.35
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.34
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.33
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.33
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.3
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.29
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.28
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.27
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.27
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.26
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.26
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.25
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.25
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.24
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.24
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.23
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.22
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.21
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.21
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.2
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.2
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.2
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.16
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.14
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.13
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.13
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.01
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.99
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.95
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.93
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.9
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.81
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.78
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.68
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.56
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.46
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.45
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.45
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.4
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.2
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.16
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.11
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.0
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.99
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.85
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.83
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.78
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.61
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.59
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.24
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.87
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.53
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.27
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.12
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	95.75
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.71
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	95.66
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	95.49
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.28
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	94.44
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	92.67

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.93  E-value=2.3e-26  Score=180.32  Aligned_cols=154  Identities=31%  Similarity=0.501  Sum_probs=136.2

Q ss_pred             ChHHHHHhhhCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCc--cceEEEcCCC--CcEEEEEccCCcccc--ccCCCcc
Q 041168            1 RSALLQFKQSLTVVQCSFDDYPSAYPKVASWSQEEENRDCCL--WDGIKCNEDN--GHVIRLDLTSSCLYG--SINSSSS   74 (177)
Q Consensus         1 ~~~l~~~k~~~~~~~~~~~~~~~~~~~l~~W~~~~~~~~~C~--w~gv~c~~~~--~~l~~L~l~~n~l~~--~~~~~~~   74 (177)
                      ++||++||+++.++.           .+.+|.   .+.+||.  |.||.|....  ++|+.|++++|.+.+  .+|.  .
T Consensus         8 ~~aL~~~k~~~~~~~-----------~l~~W~---~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~--~   71 (313)
T 1ogq_A            8 KQALLQIKKDLGNPT-----------TLSSWL---PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPS--S   71 (313)
T ss_dssp             HHHHHHHHHHTTCCG-----------GGTTCC---TTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCG--G
T ss_pred             HHHHHHHHHhcCCcc-----------cccCCC---CCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccCh--h
Confidence            368999999996543           589997   5678998  9999998644  799999999999998  7888  8


Q ss_pred             cccCcCCcEEEccC-CCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHh
Q 041168           75 LFQLVHLEWLVLSN-NHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLA  151 (177)
Q Consensus        75 l~~l~~L~~L~Ls~-n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~  151 (177)
                      +..+++|++|++++ |.+.+. +|..+..+++|++  +++|.+.+.+|..+..+++|++|++++|  .+   .+.+|..+
T Consensus        72 l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N--~l---~~~~p~~~  145 (313)
T 1ogq_A           72 LANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN--AL---SGTLPPSI  145 (313)
T ss_dssp             GGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSS--EE---ESCCCGGG
T ss_pred             HhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCC--cc---CCcCChHH
Confidence            99999999999995 999877 8999999999999  9999999889999999999999999999  55   56788889


Q ss_pred             hcCCCCCEEEeecccCCCCCCcccc
Q 041168          152 EKLANLKVLHLGQVNTASTVPYALA  176 (177)
Q Consensus       152 ~~l~~L~~L~Ls~N~l~g~~p~~l~  176 (177)
                      ..+++|++|++++|.+++.+|..++
T Consensus       146 ~~l~~L~~L~L~~N~l~~~~p~~l~  170 (313)
T 1ogq_A          146 SSLPNLVGITFDGNRISGAIPDSYG  170 (313)
T ss_dssp             GGCTTCCEEECCSSCCEEECCGGGG
T ss_pred             hcCCCCCeEECcCCcccCcCCHHHh
Confidence            9999999999999999988888765

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.87  E-value=6.4e-23  Score=174.55  Aligned_cols=161  Identities=19%  Similarity=0.287  Sum_probs=124.3

Q ss_pred             ChHHHHHhhhCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc---ceEEEcCCCCcEEEEEccCCccccccCCCccccc
Q 041168            1 RSALLQFKQSLTVVQCSFDDYPSAYPKVASWSQEEENRDCCLW---DGIKCNEDNGHVIRLDLTSSCLYGSINSSSSLFQ   77 (177)
Q Consensus         1 ~~~l~~~k~~~~~~~~~~~~~~~~~~~l~~W~~~~~~~~~C~w---~gv~c~~~~~~l~~L~l~~n~l~~~~~~~~~l~~   77 (177)
                      ++||.++|.++.++.  |.-+--.++...+|+   .+.++|.|   .||.|+.. ++|+.|+|+++.+.|.+|+  .+.+
T Consensus        32 ~~aL~~~~~~~~~~~--w~~~~~~~~~~~~W~---~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~--~l~~  103 (636)
T 4eco_A           32 YLALKEIWDALNGKN--WSQQGFGTQPGANWN---FNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPD--AIGQ  103 (636)
T ss_dssp             HHHHHHHHHHTTGGG--CCCCC------CCCC---CSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECG--GGGG
T ss_pred             HHHHHHHHHHcCCCC--cccCCcCCccCCCCC---CCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCCh--HHhc
Confidence            369999999998765  322222234456898   67899999   99999765 7999999999999999998  9999


Q ss_pred             CcCCcEEEccCCCC------------------------------------------------------------------
Q 041168           78 LVHLEWLVLSNNHF------------------------------------------------------------------   91 (177)
Q Consensus        78 l~~L~~L~Ls~n~l------------------------------------------------------------------   91 (177)
                      +++|++|+|++|.+                                                                  
T Consensus       104 L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l  183 (636)
T 4eco_A          104 LTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITL  183 (636)
T ss_dssp             CTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCC
T ss_pred             CccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccch
Confidence            99999999998854                                                                  


Q ss_pred             ------------CCCCCCccccCCccccc--cccccCCCC-----------------CChhhh--CCCCCCEEeCCCCcC
Q 041168           92 ------------NFSEIPSEIKNLSRLTA--LSNPSFFGQ-----------------IPAELL--ELSDLESLDLSFNNF  138 (177)
Q Consensus        92 ------------~~~~~p~~~~~l~~L~~--ls~n~l~~~-----------------~p~~~~--~l~~L~~L~Ls~N~~  138 (177)
                                  + . +|..++.+++|++  |++|.+.+.                 +|..++  .+++|++|++++|  
T Consensus       184 ~~l~l~~~~n~l~-~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n--  259 (636)
T 4eco_A          184 KDTQIGQLSNNIT-F-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC--  259 (636)
T ss_dssp             CTTTTTCCSCEEE-E-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECC--
T ss_pred             hhhhhccccCCCc-c-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCC--
Confidence                        1 1 5667778888888  888888864                 788877  8888888888888  


Q ss_pred             CcccCCCchhHHhhcCCCCCEEEeeccc-CCC-CCCcccc
Q 041168          139 HLKLQGPSLANLAEKLANLKVLHLGQVN-TAS-TVPYALA  176 (177)
Q Consensus       139 ~l~~~~~~~p~~~~~l~~L~~L~Ls~N~-l~g-~~p~~l~  176 (177)
                      .+   .+.+|..+.++++|++|++++|+ ++| .+|..++
T Consensus       260 ~l---~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~  296 (636)
T 4eco_A          260 PN---LTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQ  296 (636)
T ss_dssp             TT---CSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHH
T ss_pred             cC---CccChHHHhcCCCCCEEECcCCCCCccccchHHHH
Confidence            45   56777778888888888888887 777 6776553

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.86  E-value=3.7e-22  Score=173.02  Aligned_cols=117  Identities=29%  Similarity=0.389  Sum_probs=90.3

Q ss_pred             ChHHHHHhhhCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccceEEEcCCCCcEEEEEccCCccccc---cC-------
Q 041168            1 RSALLQFKQSLTVVQCSFDDYPSAYPKVASWSQEEENRDCCLWDGIKCNEDNGHVIRLDLTSSCLYGS---IN-------   70 (177)
Q Consensus         1 ~~~l~~~k~~~~~~~~~~~~~~~~~~~l~~W~~~~~~~~~C~w~gv~c~~~~~~l~~L~l~~n~l~~~---~~-------   70 (177)
                      |+||++||+++.++.           ++.+|.   .+.+||.|.||.|+  .++|+.|+++++.+.+.   ++       
T Consensus        14 ~~all~~k~~~~~~~-----------~l~~W~---~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~   77 (768)
T 3rgz_A           14 IHQLISFKDVLPDKN-----------LLPDWS---SNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLT   77 (768)
T ss_dssp             HHHHHHHHTTCSCTT-----------SSTTCC---TTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCT
T ss_pred             HHHHHHHHhhCCCcc-----------cccCCC---CCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccC
Confidence            479999999998543           589998   66799999999998  47999999999988875   43       


Q ss_pred             ----------------CCcccccCcCCcEEEccCCCCCCCCCCc--cccCCccccc--cccccCCCCCChhh-hCCCCCC
Q 041168           71 ----------------SSSSLFQLVHLEWLVLSNNHFNFSEIPS--EIKNLSRLTA--LSNPSFFGQIPAEL-LELSDLE  129 (177)
Q Consensus        71 ----------------~~~~l~~l~~L~~L~Ls~n~l~~~~~p~--~~~~l~~L~~--ls~n~l~~~~p~~~-~~l~~L~  129 (177)
                                      .  .+..+++|++|+|++|.+++. +|.  .++.+++|++  +++|.+.+.+|..+ ..+++|+
T Consensus        78 ~L~~l~~~~~~~~~l~~--~~~~l~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~  154 (768)
T 3rgz_A           78 GLESLFLSNSHINGSVS--GFKCSASLTSLDLSRNSLSGP-VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLE  154 (768)
T ss_dssp             TCCEEECTTSCEEECCC--CCCCCTTCCEEECCSSEEEEE-GGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCS
T ss_pred             cccccCCcCCCcCCCch--hhccCCCCCEEECCCCcCCCc-CCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCC
Confidence                            3  566677777788887777765 666  6777777777  77777776666554 5677777


Q ss_pred             EEeCCCC
Q 041168          130 SLDLSFN  136 (177)
Q Consensus       130 ~L~Ls~N  136 (177)
                      +|++++|
T Consensus       155 ~L~Ls~n  161 (768)
T 3rgz_A          155 VLDLSAN  161 (768)
T ss_dssp             EEECCSS
T ss_pred             EEECCCC
Confidence            7777777

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.82  E-value=8.1e-21  Score=166.41  Aligned_cols=156  Identities=20%  Similarity=0.236  Sum_probs=117.2

Q ss_pred             ChHHHHHhhhCccCCCCCCCCCCCCCCCC-CCCCCCCCCCCCcc------------ceEEEcCCCCcEEEEEccCCcccc
Q 041168            1 RSALLQFKQSLTVVQCSFDDYPSAYPKVA-SWSQEEENRDCCLW------------DGIKCNEDNGHVIRLDLTSSCLYG   67 (177)
Q Consensus         1 ~~~l~~~k~~~~~~~~~~~~~~~~~~~l~-~W~~~~~~~~~C~w------------~gv~c~~~~~~l~~L~l~~n~l~~   67 (177)
                      ++||++||.++.++.  |        ... +|.  .....+|.|            .||.|+. .++|+.|+|+++.+.|
T Consensus       271 ~~ALl~~k~~l~~~~--W--------~~~~~~~--~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G  337 (876)
T 4ecn_A          271 YKALKAIWEALDGKN--W--------RYYSGTI--NNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKG  337 (876)
T ss_dssp             HHHHHHHHHHTTGGG--C--------CCCCSSC--SSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEE
T ss_pred             HHHHHHHHHHcCCCC--C--------CcCCCcc--cccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCC
Confidence            369999999996542  2        111 121  012233999            9999986 4799999999999999


Q ss_pred             ccCCCcccccCcCCcEEEc-cCCCCCCC----------------------------------------------------
Q 041168           68 SINSSSSLFQLVHLEWLVL-SNNHFNFS----------------------------------------------------   94 (177)
Q Consensus        68 ~~~~~~~l~~l~~L~~L~L-s~n~l~~~----------------------------------------------------   94 (177)
                      .+|+  .+.++++|++|+| ++|.+.+.                                                    
T Consensus       338 ~ip~--~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~  415 (876)
T 4ecn_A          338 RVPD--AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMK  415 (876)
T ss_dssp             EECG--GGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSC
T ss_pred             cCch--HHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccc
Confidence            9998  9999999999999 66643221                                                    


Q ss_pred             -----------------------CCCccccCCccccc--cccccCCC-----------------CCChhhh--CCCCCCE
Q 041168           95 -----------------------EIPSEIKNLSRLTA--LSNPSFFG-----------------QIPAELL--ELSDLES  130 (177)
Q Consensus        95 -----------------------~~p~~~~~l~~L~~--ls~n~l~~-----------------~~p~~~~--~l~~L~~  130 (177)
                                             .+|..++.+++|++  |++|.+.+                 .+|..++  .+++|++
T Consensus       416 ~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~  495 (876)
T 4ecn_A          416 PIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTD  495 (876)
T ss_dssp             CCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCE
T ss_pred             ccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCE
Confidence                                   05667778888888  88888887                 2777776  8888888


Q ss_pred             EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeeccc-CCC-CCCcccc
Q 041168          131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVN-TAS-TVPYALA  176 (177)
Q Consensus       131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~-l~g-~~p~~l~  176 (177)
                      |+|++|  .+   .+.+|..+..+++|++|+|++|+ ++| .+|..++
T Consensus       496 L~Ls~N--~l---~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~  538 (876)
T 4ecn_A          496 VELYNC--PN---MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWT  538 (876)
T ss_dssp             EEEESC--TT---CCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHH
T ss_pred             EECcCC--CC---CccChHHHhCCCCCCEEECcCCCCcccccchHHHH
Confidence            888888  45   57778888888888888888887 777 6776543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.81  E-value=3.6e-21  Score=151.77  Aligned_cols=121  Identities=18%  Similarity=0.306  Sum_probs=90.8

Q ss_pred             ChHHHHHhhhCccCCCCCCCCCCCCCCCCCCCCC-CCCCCCCccceEEEcC--------CCCcEEEEEccCCccccccCC
Q 041168            1 RSALLQFKQSLTVVQCSFDDYPSAYPKVASWSQE-EENRDCCLWDGIKCNE--------DNGHVIRLDLTSSCLYGSINS   71 (177)
Q Consensus         1 ~~~l~~~k~~~~~~~~~~~~~~~~~~~l~~W~~~-~~~~~~C~w~gv~c~~--------~~~~l~~L~l~~n~l~~~~~~   71 (177)
                      ++||++||..+..++..         .+..|... ....++|.|.|+.|..        ...+|+.|++++|.++ .+|.
T Consensus        29 ~~aLl~~k~~~~~~~~~---------~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~   98 (328)
T 4fcg_A           29 HDVLSQWQRHYNADRNR---------WHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPD   98 (328)
T ss_dssp             HHHHHHHHHHHHHCCTT---------HHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCS
T ss_pred             HHHHHHHHHhccCCchh---------hhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcCh
Confidence            36899999998655443         46788310 1457899999999942        2367888888888887 5676


Q ss_pred             CcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeCCCC
Q 041168           72 SSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFN  136 (177)
Q Consensus        72 ~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N  136 (177)
                        .+..+++|++|+|++|.++ . +|..+..+++|++  +++|.+. .+|..+..+++|++|++++|
T Consensus        99 --~l~~l~~L~~L~L~~n~l~-~-lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n  160 (328)
T 4fcg_A           99 --QAFRLSHLQHMTIDAAGLM-E-LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRAC  160 (328)
T ss_dssp             --CGGGGTTCSEEEEESSCCC-C-CCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEE
T ss_pred             --hhhhCCCCCEEECCCCCcc-c-hhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCC
Confidence              6777888888888888887 5 7777788888888  7888777 67777777777777777776

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.78  E-value=1.8e-18  Score=129.79  Aligned_cols=131  Identities=21%  Similarity=0.191  Sum_probs=108.5

Q ss_pred             CCCCCCccceEEEcCC---------CCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccc
Q 041168           36 ENRDCCLWDGIKCNED---------NGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRL  106 (177)
Q Consensus        36 ~~~~~C~w~gv~c~~~---------~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L  106 (177)
                      .....|.|.+|.|...         ..+++.|++++|.+++..+.  .+..+++|++|+|++|.+... .+..|..+++|
T Consensus        14 ~~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~L~~N~l~~i-~~~~~~~l~~L   90 (229)
T 3e6j_A           14 PSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPG--VFDSLINLKELYLGSNQLGAL-PVGVFDSLTQL   90 (229)
T ss_dssp             CTTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTC
T ss_pred             CCCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHH--HhhCccCCcEEECCCCCCCCc-ChhhcccCCCc
Confidence            4568899999999642         25799999999999987777  889999999999999999854 34567889999


Q ss_pred             cc--cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCccc
Q 041168          107 TA--LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYAL  175 (177)
Q Consensus       107 ~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~l  175 (177)
                      ++  |++|++.+..+..+..+++|++|+|++|  .+    ..+|..+..+++|++|+|++|+|++..+..+
T Consensus        91 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N--~l----~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~  155 (229)
T 3e6j_A           91 TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN--KL----TELPRGIERLTHLTHLALDQNQLKSIPHGAF  155 (229)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSS--CC----CSCCTTGGGCTTCSEEECCSSCCCCCCTTTT
T ss_pred             CEEECCCCcCCccChhHhCcchhhCeEeccCC--cc----cccCcccccCCCCCEEECCCCcCCccCHHHH
Confidence            99  9999998666667889999999999999  45    3578888899999999999999986443333

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.73  E-value=2.9e-17  Score=121.05  Aligned_cols=124  Identities=25%  Similarity=0.257  Sum_probs=95.3

Q ss_pred             CccceEEEcCC---------CCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--c
Q 041168           41 CLWDGIKCNED---------NGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--L  109 (177)
Q Consensus        41 C~w~gv~c~~~---------~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--l  109 (177)
                      |.|.+|.|...         ..++++|++++|.+++..+.  .+..+++|++|++++|.++.. .+..+..+++|++  +
T Consensus         7 C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L   83 (208)
T 2o6s_A            7 CSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNG--VFDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNL   83 (208)
T ss_dssp             EETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTT--TTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEEC
T ss_pred             ECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChh--hhcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEEC
Confidence            78999999542         24689999999999865555  678889999999999999854 4455788888988  8


Q ss_pred             ccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCC
Q 041168          110 SNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVP  172 (177)
Q Consensus       110 s~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p  172 (177)
                      ++|++.+..+..+..+++|++|++++|  .+   ....+..+..+++|++|++++|.+++..+
T Consensus        84 s~n~l~~~~~~~~~~l~~L~~L~L~~N--~l---~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  141 (208)
T 2o6s_A           84 STNQLQSLPNGVFDKLTQLKELALNTN--QL---QSLPDGVFDKLTQLKDLRLYQNQLKSVPD  141 (208)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSS--CC---CCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CCCcCCccCHhHhcCccCCCEEEcCCC--cC---cccCHhHhccCCcCCEEECCCCccceeCH
Confidence            889888665556788889999999888  44   44444456778888888888888875443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.73  E-value=2e-17  Score=123.41  Aligned_cols=127  Identities=17%  Similarity=0.175  Sum_probs=105.2

Q ss_pred             CccceEEEcCC---------CCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--c
Q 041168           41 CLWDGIKCNED---------NGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--L  109 (177)
Q Consensus        41 C~w~gv~c~~~---------~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--l  109 (177)
                      |.|..|.|...         ..+++.|++++|.+++..+.  .+..+++|++|+|++|.++.. .|..|..+++|++  |
T Consensus        11 C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~--~~~~l~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~L   87 (220)
T 2v9t_B           11 CSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPG--AFSPYKKLRRIDLSNNQISEL-APDAFQGLRSLNSLVL   87 (220)
T ss_dssp             EETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTT--SSTTCTTCCEEECCSSCCCEE-CTTTTTTCSSCCEEEC
T ss_pred             ECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHh--HhhCCCCCCEEECCCCcCCCc-CHHHhhCCcCCCEEEC
Confidence            68888999532         24789999999999976666  788899999999999999965 6888999999999  9


Q ss_pred             ccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCccc
Q 041168          110 SNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYAL  175 (177)
Q Consensus       110 s~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~l  175 (177)
                      ++|.+....+..+..+++|++|+|++|  .+   ....|..|..+++|++|+|++|.|++..+..+
T Consensus        88 s~N~l~~l~~~~f~~l~~L~~L~L~~N--~l---~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  148 (220)
T 2v9t_B           88 YGNKITELPKSLFEGLFSLQLLLLNAN--KI---NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF  148 (220)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSS--CC---CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             CCCcCCccCHhHccCCCCCCEEECCCC--CC---CEeCHHHcCCCCCCCEEECCCCcCCEECHHHH
Confidence            999998555556788999999999999  55   55667788899999999999999987555444

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.72  E-value=1.4e-17  Score=121.79  Aligned_cols=125  Identities=21%  Similarity=0.202  Sum_probs=107.5

Q ss_pred             CccceEEEcCC---------CCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--c
Q 041168           41 CLWDGIKCNED---------NGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--L  109 (177)
Q Consensus        41 C~w~gv~c~~~---------~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--l  109 (177)
                      |.|..+.|...         ..++++|++++|.+++..+. ..+..+++|++|+|++|.+++. .|..|..+++|++  |
T Consensus         8 C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~-~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L   85 (192)
T 1w8a_A            8 CEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSD-GLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQL   85 (192)
T ss_dssp             EETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCS-CSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEEC
T ss_pred             ECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCc-cccccCCCCCEEECCCCCCCCc-CHhHcCCcccCCEEEC
Confidence            68888888532         24889999999999865543 0388999999999999999976 7889999999999  9


Q ss_pred             ccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCC
Q 041168          110 SNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVP  172 (177)
Q Consensus       110 s~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p  172 (177)
                      ++|++.+..+..+..+++|++|+|++|  .+   .+..|..+..+++|++|+|++|++.+..+
T Consensus        86 s~N~l~~~~~~~~~~l~~L~~L~L~~N--~l---~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           86 GENKIKEISNKMFLGLHQLKTLNLYDN--QI---SCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSS--CC---CEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CCCcCCccCHHHhcCCCCCCEEECCCC--cC---CeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            999999888888999999999999999  55   56678889999999999999999998765

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.72  E-value=3.6e-17  Score=117.68  Aligned_cols=124  Identities=23%  Similarity=0.296  Sum_probs=103.8

Q ss_pred             CccceEEEcCC---------CCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--c
Q 041168           41 CLWDGIKCNED---------NGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--L  109 (177)
Q Consensus        41 C~w~gv~c~~~---------~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--l  109 (177)
                      |.|.++.|...         ..+++.|++++|.+++..+.  .+..+++|++|++++|.++.. .+..+..+++|++  +
T Consensus         7 C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l   83 (177)
T 2o6r_A            7 CSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHG--VFDKLTQLTKLSLSQNQIQSL-PDGVFDKLTKLTILYL   83 (177)
T ss_dssp             EETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTT--TTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEEC
T ss_pred             eCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHH--HhcCcccccEEECCCCcceEe-ChhHccCCCccCEEEC
Confidence            78999999542         25799999999999976555  678999999999999999964 4556789999999  9


Q ss_pred             ccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCC
Q 041168          110 SNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVP  172 (177)
Q Consensus       110 s~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p  172 (177)
                      ++|.+.+..+..+..+++|++|++++|  .+   ....+..+..+++|++|++++|++.+..|
T Consensus        84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N--~l---~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           84 HENKLQSLPNGVFDKLTQLKELALDTN--QL---KSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSS--CC---SCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCCCccccCHHHhhCCcccCEEECcCC--cc---eEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            999999776667899999999999999  55   44444456889999999999999998765

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.71  E-value=5e-17  Score=121.21  Aligned_cols=129  Identities=16%  Similarity=0.147  Sum_probs=93.0

Q ss_pred             CccceEEEcCC---------CCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--c
Q 041168           41 CLWDGIKCNED---------NGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--L  109 (177)
Q Consensus        41 C~w~gv~c~~~---------~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--l  109 (177)
                      |.|..+.|...         ...++.|++++|.+++..+.. .+..+++|++|+|++|.+++. .+..|..+++|++  |
T Consensus        11 C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~-~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~~L~~L~L   88 (220)
T 2v70_A           11 CEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATG-IFKKLPQLRKINFSNNKITDI-EEGAFEGASGVNEILL   88 (220)
T ss_dssp             EETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCC-CGGGCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEEC
T ss_pred             ECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchh-hhccCCCCCEEECCCCcCCEE-CHHHhCCCCCCCEEEC
Confidence            57777777432         135678888888887654420 467788888888888888754 4557788888888  8


Q ss_pred             ccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCcccc
Q 041168          110 SNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYALA  176 (177)
Q Consensus       110 s~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~l~  176 (177)
                      ++|.+.+..+..+..+++|++|+|++|  .+   .+..|..+..+++|++|+|++|.+++..|..++
T Consensus        89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N--~l---~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  150 (220)
T 2v70_A           89 TSNRLENVQHKMFKGLESLKTLMLRSN--RI---TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD  150 (220)
T ss_dssp             CSSCCCCCCGGGGTTCSSCCEEECTTS--CC---CCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTT
T ss_pred             CCCccCccCHhHhcCCcCCCEEECCCC--cC---CeECHhHcCCCccCCEEECCCCcCCEECHHHhc
Confidence            888887666666788888888888888  44   455566777788888888888888765565543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.70  E-value=4.1e-17  Score=137.10  Aligned_cols=148  Identities=22%  Similarity=0.178  Sum_probs=98.0

Q ss_pred             CCCCCCCCCCCCCCC-CCCCCCCcc----ceEEEcCC---------CCcEEEEEccCCccccccCCCcccccCcCCcEEE
Q 041168           20 DYPSAYPKVASWSQE-EENRDCCLW----DGIKCNED---------NGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLV   85 (177)
Q Consensus        20 ~~~~~~~~l~~W~~~-~~~~~~C~w----~gv~c~~~---------~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~   85 (177)
                      ||..-.++++.|... +...++|.+    ..|.|...         ...+++|+|++|.|++..+.  .|.++++|++|+
T Consensus         5 ~~~~~~~~~~~~~~~~p~~~~~c~~~~~~~~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~--~f~~l~~L~~L~   82 (635)
T 4g8a_A            5 DYKDDDDKLAAANSSIPESWEPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSY--SFFSFPELQVLD   82 (635)
T ss_dssp             --------------------CCSEEEETTTEEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTT--TTTTCTTCCEEE
T ss_pred             ccCCCcchhhcccCCCCCCCCCccccCCCCEEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHH--HHhCCCCCCEEE
Confidence            444444556666521 112345644    24778532         24789999999999976666  799999999999


Q ss_pred             ccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEee
Q 041168           86 LSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLG  163 (177)
Q Consensus        86 Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls  163 (177)
                      |++|.|+.. .+..|..+++|++  |++|++.+..+..|..+++|++|++++|  .+   ....+..|+.+++|++|+|+
T Consensus        83 Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N--~l---~~l~~~~~~~L~~L~~L~Ls  156 (635)
T 4g8a_A           83 LSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET--NL---ASLENFPIGHLKTLKELNVA  156 (635)
T ss_dssp             CTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTS--CC---CCSTTCCCTTCTTCCEEECC
T ss_pred             CCCCcCCCc-ChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCC--cC---CCCChhhhhcCcccCeeccc
Confidence            999999864 4567899999999  9999998666667889999999999999  44   33334457777788888888


Q ss_pred             cccCCC-CCCccc
Q 041168          164 QVNTAS-TVPYAL  175 (177)
Q Consensus       164 ~N~l~g-~~p~~l  175 (177)
                      +|.+++ .+|..+
T Consensus       157 ~N~l~~~~~~~~~  169 (635)
T 4g8a_A          157 HNLIQSFKLPEYF  169 (635)
T ss_dssp             SSCCCCCCCCGGG
T ss_pred             cCccccCCCchhh
Confidence            887764 244443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.70  E-value=6.2e-17  Score=122.65  Aligned_cols=111  Identities=23%  Similarity=0.201  Sum_probs=50.5

Q ss_pred             cEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEE
Q 041168           54 HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESL  131 (177)
Q Consensus        54 ~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L  131 (177)
                      ++++|++++|.+++..+.  .+..+++|++|++++|.++.. .+..+..+++|++  +++|++.+..+..+..+++|++|
T Consensus        60 ~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  136 (251)
T 3m19_A           60 KLTWLNLDYNQLQTLSAG--VFDDLTELGTLGLANNQLASL-PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKEL  136 (251)
T ss_dssp             TCCEEECTTSCCCCCCTT--TTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCEEECCCCcCCccCHh--HhccCCcCCEEECCCCccccc-ChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEE
Confidence            344444444444433333  344444444444444444432 2233444444444  44454443333334445555555


Q ss_pred             eCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCC
Q 041168          132 DLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVP  172 (177)
Q Consensus       132 ~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p  172 (177)
                      +|++|  .+   ....+..+..+++|++|+|++|++++..+
T Consensus       137 ~Ls~N--~l---~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  172 (251)
T 3m19_A          137 RLNTN--QL---QSIPAGAFDKLTNLQTLSLSTNQLQSVPH  172 (251)
T ss_dssp             ECCSS--CC---CCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             ECcCC--cC---CccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence            55555  23   22223345556666666666666654333

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.67  E-value=2.6e-16  Score=120.41  Aligned_cols=109  Identities=23%  Similarity=0.265  Sum_probs=67.9

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      ..++.|++++|.+++..+.  .+..+++|++|++++|.++.. .+..|..+++|++  +++|.+.+..+..+..+++|++
T Consensus        37 ~~l~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  113 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSK--AFHRLTKLRLLYLNDNKLQTL-PAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAE  113 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTT--SSSSCTTCCEEECCSSCCSCC-CTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCE
T ss_pred             CCCCEEECcCCCCCeeCHH--HhcCCCCCCEEECCCCccCee-ChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCE
Confidence            3577888888888765555  677777888888887777743 2334566777777  7777776544445566666666


Q ss_pred             EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCC
Q 041168          131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAS  169 (177)
Q Consensus       131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g  169 (177)
                      |++++|  .+   ....+..+..+++|++|+|++|.+++
T Consensus       114 L~l~~n--~l---~~~~~~~~~~l~~L~~L~Ls~n~l~~  147 (270)
T 2o6q_A          114 LRLDRN--QL---KSLPPRVFDSLTKLTYLSLGYNELQS  147 (270)
T ss_dssp             EECCSS--CC---CCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             EECCCC--cc---CeeCHHHhCcCcCCCEEECCCCcCCc
Confidence            666666  33   23333344555555555555555543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.67  E-value=1.6e-16  Score=125.13  Aligned_cols=115  Identities=21%  Similarity=0.194  Sum_probs=99.5

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      .++++|++++|.++ .+|.  .+..+++|++|++++|.+++  +|..+..+++|++  +++|++.+.+|..++.+++|++
T Consensus       183 ~~L~~L~L~~n~l~-~lp~--~l~~l~~L~~L~L~~N~l~~--l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~  257 (328)
T 4fcg_A          183 VNLQSLRLEWTGIR-SLPA--SIANLQNLKSLKIRNSPLSA--LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR  257 (328)
T ss_dssp             TTCCEEEEEEECCC-CCCG--GGGGCTTCCEEEEESSCCCC--CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCE
T ss_pred             CCCCEEECcCCCcC-cchH--hhcCCCCCCEEEccCCCCCc--CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCE
Confidence            57888888888887 6777  78888999999999999884  7778888999998  8898888888888999999999


Q ss_pred             EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCccccC
Q 041168          131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYALAN  177 (177)
Q Consensus       131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~  177 (177)
                      |++++|  .+   .+.+|..+..+++|++|+|++|++.+.+|+.+++
T Consensus       258 L~L~~n--~~---~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~  299 (328)
T 4fcg_A          258 LILKDC--SN---LLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ  299 (328)
T ss_dssp             EECTTC--TT---CCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGG
T ss_pred             EECCCC--Cc---hhhcchhhhcCCCCCEEeCCCCCchhhccHHHhh
Confidence            999998  45   6788888999999999999999999999998763

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.66  E-value=5.4e-16  Score=113.49  Aligned_cols=121  Identities=22%  Similarity=0.248  Sum_probs=102.7

Q ss_pred             CccceEEEcCC---------CCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--c
Q 041168           41 CLWDGIKCNED---------NGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--L  109 (177)
Q Consensus        41 C~w~gv~c~~~---------~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--l  109 (177)
                      |.+..+.|...         ..++++|++++|.++ .+|.  .+..+++|++|+|++|.++.. .+..|..+++|++  |
T Consensus        10 C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~--~~~~l~~L~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~L   85 (193)
T 2wfh_A           10 CLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPK--ELSNYKHLTLIDLSNNRISTL-SNQSFSNMTQLLTLIL   85 (193)
T ss_dssp             EETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCG--GGGGCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEEC
T ss_pred             eCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHH--HhhcccCCCEEECCCCcCCEe-CHhHccCCCCCCEEEC
Confidence            56777888532         257999999999998 5777  899999999999999999975 6678999999999  9


Q ss_pred             ccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCC
Q 041168          110 SNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAST  170 (177)
Q Consensus       110 s~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~  170 (177)
                      ++|.+.+..|..|..+++|++|+|++|  .+   ....+..|..+++|+.|+|++|++...
T Consensus        86 s~N~l~~i~~~~f~~l~~L~~L~L~~N--~l---~~~~~~~~~~l~~L~~L~L~~N~~~C~  141 (193)
T 2wfh_A           86 SYNRLRCIPPRTFDGLKSLRLLSLHGN--DI---SVVPEGAFNDLSALSHLAIGANPLYCD  141 (193)
T ss_dssp             CSSCCCBCCTTTTTTCTTCCEEECCSS--CC---CBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             CCCccCEeCHHHhCCCCCCCEEECCCC--CC---CeeChhhhhcCccccEEEeCCCCeecC
Confidence            999999888888999999999999999  45   433444688999999999999998653

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.65  E-value=3.6e-16  Score=116.53  Aligned_cols=113  Identities=13%  Similarity=0.106  Sum_probs=100.8

Q ss_pred             CCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCC
Q 041168           52 NGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLE  129 (177)
Q Consensus        52 ~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~  129 (177)
                      ..+++.|++++|.+++..+.  .+..+++|++|+|++|.+++. .+..|..+++|++  |++|++.+..|..+..+++|+
T Consensus        56 l~~L~~L~L~~N~i~~i~~~--~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  132 (220)
T 2v70_A           56 LPQLRKINFSNNKITDIEEG--AFEGASGVNEILLTSNRLENV-QHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVR  132 (220)
T ss_dssp             CTTCCEEECCSSCCCEECTT--TTTTCTTCCEEECCSSCCCCC-CGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCS
T ss_pred             CCCCCEEECCCCcCCEECHH--HhCCCCCCCEEECCCCccCcc-CHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCC
Confidence            36899999999999987777  799999999999999999975 5667999999999  999999988889999999999


Q ss_pred             EEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCC
Q 041168          130 SLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVP  172 (177)
Q Consensus       130 ~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p  172 (177)
                      +|+|++|  .+   .+..|..+..+++|++|+|++|++.+..+
T Consensus       133 ~L~L~~N--~l---~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          133 LLSLYDN--QI---TTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             EEECTTS--CC---CCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             EEECCCC--cC---CEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            9999999  55   56668889999999999999999986544

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.65  E-value=6.2e-17  Score=126.61  Aligned_cols=116  Identities=16%  Similarity=0.308  Sum_probs=102.4

Q ss_pred             CcEEEEEccC-CccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCC
Q 041168           53 GHVIRLDLTS-SCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLE  129 (177)
Q Consensus        53 ~~l~~L~l~~-n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~  129 (177)
                      .++++|++++ |.+.+.+|.  .+..+++|++|++++|.+++. +|..+..+++|++  +++|.+.+.+|..+..+++|+
T Consensus        76 ~~L~~L~L~~~n~l~~~~p~--~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  152 (313)
T 1ogq_A           76 PYLNFLYIGGINNLVGPIPP--AIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV  152 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCG--GGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCC
T ss_pred             CCCCeeeCCCCCcccccCCh--hHhcCCCCCEEECcCCeeCCc-CCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCC
Confidence            5789999995 889888888  899999999999999999876 8889999999999  999999988999999999999


Q ss_pred             EEeCCCCcCCcccCCCchhHHhhcCC-CCCEEEeecccCCCCCCcccc
Q 041168          130 SLDLSFNNFHLKLQGPSLANLAEKLA-NLKVLHLGQVNTASTVPYALA  176 (177)
Q Consensus       130 ~L~Ls~N~~~l~~~~~~~p~~~~~l~-~L~~L~Ls~N~l~g~~p~~l~  176 (177)
                      +|++++|  .+   .+.+|..+..++ +|++|++++|.+++.+|..++
T Consensus       153 ~L~L~~N--~l---~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~  195 (313)
T 1ogq_A          153 GITFDGN--RI---SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA  195 (313)
T ss_dssp             EEECCSS--CC---EEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG
T ss_pred             eEECcCC--cc---cCcCCHHHhhhhhcCcEEECcCCeeeccCChHHh
Confidence            9999999  55   557788888887 899999999999888887764

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.64  E-value=1.2e-15  Score=115.47  Aligned_cols=108  Identities=25%  Similarity=0.301  Sum_probs=54.7

Q ss_pred             cEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEE
Q 041168           54 HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESL  131 (177)
Q Consensus        54 ~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L  131 (177)
                      +++.|++++|.+.+..+.  .+..+++|++|+|++|.+++. .+..+..+++|++  +++|++.+..+..+..+++|++|
T Consensus        36 ~l~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  112 (251)
T 3m19_A           36 DTEKLDLQSTGLATLSDA--TFRGLTKLTWLNLDYNQLQTL-SAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKL  112 (251)
T ss_dssp             TCCEEECTTSCCCCCCTT--TTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCEEEccCCCcCccCHh--HhcCcccCCEEECCCCcCCcc-CHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEE
Confidence            455555555555544444  455555555555555555543 3444555555555  55555554444444555555555


Q ss_pred             eCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCC
Q 041168          132 DLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAS  169 (177)
Q Consensus       132 ~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g  169 (177)
                      +|++|  .+   ....+..+..+++|++|+|++|.+++
T Consensus       113 ~L~~N--~l---~~~~~~~~~~l~~L~~L~Ls~N~l~~  145 (251)
T 3m19_A          113 YLGGN--QL---KSLPSGVFDRLTKLKELRLNTNQLQS  145 (251)
T ss_dssp             ECCSS--CC---CCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             EcCCC--cC---CCcChhHhccCCcccEEECcCCcCCc
Confidence            55555  23   22222334455555555555555554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.63  E-value=6.4e-16  Score=133.92  Aligned_cols=115  Identities=30%  Similarity=0.318  Sum_probs=62.7

Q ss_pred             cEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEE
Q 041168           54 HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESL  131 (177)
Q Consensus        54 ~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L  131 (177)
                      +++.|++++|.+.+.+|.  .+..+++|++|++++|.+++. +|..+..+++|++  +++|++.+.+|..++.+++|++|
T Consensus       443 ~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  519 (768)
T 3rgz_A          443 KLRDLKLWLNMLEGEIPQ--ELMYVKTLETLILDFNDLTGE-IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL  519 (768)
T ss_dssp             TCCEEECCSSCCCSCCCG--GGGGCTTCCEEECCSSCCCSC-CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred             CCCEEECCCCcccCcCCH--HHcCCCCceEEEecCCcccCc-CCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEE
Confidence            344444444444444444  444555555555555555544 5555555555555  55555555555555555555555


Q ss_pred             eCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCcccc
Q 041168          132 DLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYALA  176 (177)
Q Consensus       132 ~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~l~  176 (177)
                      ++++|  .+   .+.+|..+..+++|++|++++|+++|.+|..++
T Consensus       520 ~L~~N--~l---~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~  559 (768)
T 3rgz_A          520 KLSNN--SF---SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF  559 (768)
T ss_dssp             ECCSS--CC---EEECCGGGGGCTTCCEEECCSSEEESBCCGGGG
T ss_pred             ECCCC--cc---cCcCCHHHcCCCCCCEEECCCCccCCcCChHHh
Confidence            55555  33   345555666666666666666666666665543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.62  E-value=1.1e-15  Score=124.27  Aligned_cols=128  Identities=23%  Similarity=0.283  Sum_probs=96.3

Q ss_pred             CCCccce--EEEcCC--------CCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCC-CccccCCcccc
Q 041168           39 DCCLWDG--IKCNED--------NGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEI-PSEIKNLSRLT  107 (177)
Q Consensus        39 ~~C~w~g--v~c~~~--------~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-p~~~~~l~~L~  107 (177)
                      ..|.|.+  |.|...        ..++++|++++|.+++..+.  .+..+++|++|++++|.+.+. + +..|..+++|+
T Consensus         6 ~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~L~~n~~~~~-i~~~~~~~l~~L~   82 (455)
T 3v47_A            6 SECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNET--SFSRLQDLQFLKVEQQTPGLV-IRNNTFRGLSSLI   82 (455)
T ss_dssp             -CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTT--TTSSCTTCCEEECCCCSTTCE-ECTTTTTTCTTCC
T ss_pred             ceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChh--HhccCccccEEECcCCcccce-ECcccccccccCC
Confidence            4555544  777532        25789999999999877777  788899999999999988754 4 46688888898


Q ss_pred             c--cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHH--hhcCCCCCEEEeecccCCCCCCcc
Q 041168          108 A--LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANL--AEKLANLKVLHLGQVNTASTVPYA  174 (177)
Q Consensus       108 ~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~--~~~l~~L~~L~Ls~N~l~g~~p~~  174 (177)
                      +  +++|.+.+..|..++.+++|++|++++|  .+   .+..+..  +..+++|++|+|++|.+++..|..
T Consensus        83 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n--~l---~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  148 (455)
T 3v47_A           83 ILKLDYNQFLQLETGAFNGLANLEVLTLTQC--NL---DGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS  148 (455)
T ss_dssp             EEECTTCTTCEECTTTTTTCTTCCEEECTTS--CC---BTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCG
T ss_pred             EEeCCCCccCccChhhccCcccCCEEeCCCC--CC---CccccCcccccCcccCCEEECCCCccCccCccc
Confidence            8  8888888777888888888888888888  44   3434443  667777777777777777665654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.62  E-value=3e-15  Score=114.71  Aligned_cols=112  Identities=28%  Similarity=0.259  Sum_probs=62.6

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      .++++|++++|.+++..+.  .+..+++|++|++++|.+++. .+..+..+++|++  +++|.+.+..+..+..+++|++
T Consensus        85 ~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  161 (272)
T 3rfs_A           85 TNLTYLILTGNQLQSLPNG--VFDKLTNLKELVLVENQLQSL-PDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTE  161 (272)
T ss_dssp             TTCCEEECTTSCCCCCCTT--TTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCCEEECCCCccCccChh--HhcCCcCCCEEECCCCcCCcc-CHHHhccCCCCCEEECCCCccCccCHHHhccCccCCE
Confidence            4566666666666654444  455666666666666666643 3344555666666  6666665444444556666666


Q ss_pred             EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCC
Q 041168          131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVP  172 (177)
Q Consensus       131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p  172 (177)
                      |++++|  .+   .+..+..+..+++|++|++++|.+++..|
T Consensus       162 L~l~~n--~l---~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  198 (272)
T 3rfs_A          162 LDLSYN--QL---QSLPEGVFDKLTQLKDLRLYQNQLKSVPD  198 (272)
T ss_dssp             EECCSS--CC---CCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             EECCCC--Cc---CccCHHHhcCCccCCEEECCCCcCCccCH
Confidence            666666  33   33333344555566666666666555433

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.62  E-value=1.1e-15  Score=127.14  Aligned_cols=125  Identities=24%  Similarity=0.294  Sum_probs=97.2

Q ss_pred             CCccceEEEcCC-----------CCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc
Q 041168           40 CCLWDGIKCNED-----------NGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA  108 (177)
Q Consensus        40 ~C~w~gv~c~~~-----------~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~  108 (177)
                      .|.|.|+ |+..           ..++++|++++|.+++..+.  .+..+++|++|++++|.+++. .|..|..+++|++
T Consensus         3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~   78 (549)
T 2z81_A            3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHG--DLRACANLQVLILKSSRINTI-EGDAFYSLGSLEH   78 (549)
T ss_dssp             EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSS--TTSSCTTCCEEECTTSCCCEE-CTTTTTTCTTCCE
T ss_pred             cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChh--hhhcCCcccEEECCCCCcCcc-ChhhccccccCCE
Confidence            4788887 6422           24799999999999877777  889999999999999999865 6678999999999


Q ss_pred             --cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCC
Q 041168          109 --LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVP  172 (177)
Q Consensus       109 --ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p  172 (177)
                        +++|.+.+..|..++.+++|++|++++|.+.-    ...|..+..+++|++|++++|.+.+.+|
T Consensus        79 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~~l~~L~~L~L~~n~~~~~~~  140 (549)
T 2z81_A           79 LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQT----LGVTSLFPNLTNLQTLRIGNVETFSEIR  140 (549)
T ss_dssp             EECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSS----SCSSCSCTTCTTCCEEEEEESSSCCEEC
T ss_pred             EECCCCccCccCHHHhccCCCCcEEECCCCcccc----cchhhhhhccCCccEEECCCCccccccC
Confidence              99999987766679999999999999994321    1345556777777777777776544454

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.62  E-value=2e-15  Score=127.03  Aligned_cols=115  Identities=19%  Similarity=0.184  Sum_probs=60.6

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      .++++|++++|.+++..+.  .+.++++|++|++++|.+++. .|..|..+++|++  +++|.+.+..|..|+.+++|++
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~i-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  108 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSY--SFSNFSELQWLDLSRCEIETI-EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLEN  108 (606)
T ss_dssp             TTCCEEECTTSCCCEECTT--TTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCE
T ss_pred             CCcCEEECCCCCcCEeChh--hccCCccCcEEeCCCCccccc-CHHHhhchhhcCEeECCCCcccccChhhcCCcccCCE
Confidence            3455666666655554444  455555555555555555543 3444555555555  5555555444555555555555


Q ss_pred             EeCCCCcC----------------------CcccCCC-chhHHhhcCCCCCEEEeecccCCCCCCc
Q 041168          131 LDLSFNNF----------------------HLKLQGP-SLANLAEKLANLKVLHLGQVNTASTVPY  173 (177)
Q Consensus       131 L~Ls~N~~----------------------~l~~~~~-~~p~~~~~l~~L~~L~Ls~N~l~g~~p~  173 (177)
                      |++++|.+                      .+   .. .+|..++.+++|++|++++|.+++..|.
T Consensus       109 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l---~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~  171 (606)
T 3vq2_A          109 LVAVETKLASLESFPIGQLITLKKLNVAHNFI---HSCKLPAYFSNLTNLVHVDLSYNYIQTITVN  171 (606)
T ss_dssp             EECTTSCCCCSSSSCCTTCTTCCEEECCSSCC---CCCCCCGGGGTCTTCCEEECCSSCCCEECTT
T ss_pred             EEccCCccccccccccCCCCCCCEEeCCCCcc---cceechHhHhhcCCCCEEEccCCcceecChh
Confidence            55555522                      12   11 3455556666666666666665554443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.61  E-value=2.3e-15  Score=112.14  Aligned_cols=109  Identities=21%  Similarity=0.166  Sum_probs=96.1

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      .+++.|++++|.+++..+.  .|..+++|++|+|++|.++.. .+..|..+++|++  |++|++.+..|..|..+++|++
T Consensus        56 ~~L~~L~Ls~N~i~~~~~~--~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  132 (220)
T 2v9t_B           56 KKLRRIDLSNNQISELAPD--AFQGLRSLNSLVLYGNKITEL-PKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNL  132 (220)
T ss_dssp             TTCCEEECCSSCCCEECTT--TTTTCSSCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCCEEECCCCcCCCcCHH--HhhCCcCCCEEECCCCcCCcc-CHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCE
Confidence            6899999999999987788  899999999999999999953 3455788999999  9999999888889999999999


Q ss_pred             EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCC
Q 041168          131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAS  169 (177)
Q Consensus       131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g  169 (177)
                      |+|++|  .+   ....+..+..+++|++|+|++|++..
T Consensus       133 L~L~~N--~l---~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          133 LSLYDN--KL---QTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             EECCSS--CC---SCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             EECCCC--cC---CEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            999999  55   45555678899999999999999864

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.60  E-value=5.6e-15  Score=108.70  Aligned_cols=112  Identities=21%  Similarity=0.235  Sum_probs=93.3

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      .++++|++++|.+++..+.  .+..+++|++|++++|.++.. .+..+..+++|++  +++|++.+..+..+..+++|++
T Consensus        52 ~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  128 (208)
T 2o6s_A           52 TSLTQLYLGGNKLQSLPNG--VFNKLTSLTYLNLSTNQLQSL-PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKD  128 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             ccCcEEECCCCccCccChh--hcCCCCCcCEEECCCCcCCcc-CHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCE
Confidence            6899999999999965555  678899999999999999964 4456789999999  9999998766667899999999


Q ss_pred             EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCC
Q 041168          131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVP  172 (177)
Q Consensus       131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p  172 (177)
                      |++++|  .+   .+..+..+..+++|++|++++|.+.+..|
T Consensus       129 L~l~~N--~l---~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  165 (208)
T 2o6s_A          129 LRLYQN--QL---KSVPDGVFDRLTSLQYIWLHDNPWDCTCP  165 (208)
T ss_dssp             EECCSS--CC---SCCCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred             EECCCC--cc---ceeCHHHhccCCCccEEEecCCCeecCCC
Confidence            999999  55   44445557889999999999998876655

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.58  E-value=4.4e-15  Score=103.72  Aligned_cols=110  Identities=25%  Similarity=0.243  Sum_probs=94.7

Q ss_pred             CcEEEEEccCCccc-cccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCC
Q 041168           53 GHVIRLDLTSSCLY-GSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLE  129 (177)
Q Consensus        53 ~~l~~L~l~~n~l~-~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~  129 (177)
                      ++++.|++++|.++ +.+|.  .+..+++|++|++++|.+++  + ..+..+++|++  +++|.+.+.+|..+..+++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~--~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~   91 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEG--LTDEFEELEFLSTINVGLTS--I-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT   91 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCS--CCTTCTTCCEEECTTSCCCC--C-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred             ccCeEEEccCCcCChhHHHH--HHhhcCCCcEEECcCCCCCC--c-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence            57899999999998 67887  78999999999999999984  5 67889999999  999999977888888899999


Q ss_pred             EEeCCCCcCCcccCCCc-hhHHhhcCCCCCEEEeecccCCCCCC
Q 041168          130 SLDLSFNNFHLKLQGPS-LANLAEKLANLKVLHLGQVNTASTVP  172 (177)
Q Consensus       130 ~L~Ls~N~~~l~~~~~~-~p~~~~~l~~L~~L~Ls~N~l~g~~p  172 (177)
                      +|++++|  .+   .+. .+..+..+++|++|++++|.+++..+
T Consensus        92 ~L~ls~N--~i---~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  130 (149)
T 2je0_A           92 HLNLSGN--KI---KDLSTIEPLKKLENLKSLDLFNCEVTNLND  130 (149)
T ss_dssp             EEECTTS--CC---CSHHHHGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred             EEECCCC--cC---CChHHHHHHhhCCCCCEEeCcCCcccchHH
Confidence            9999999  45   332 34778999999999999999986543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.58  E-value=8.9e-15  Score=109.53  Aligned_cols=111  Identities=19%  Similarity=0.133  Sum_probs=95.8

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      .+|+.|++++|.+....+.  .+..+++|++|+|++|.++.. .+..|..+++|++  +++|++. .+|..+..+++|++
T Consensus        64 ~~L~~L~L~~N~l~~i~~~--~~~~l~~L~~L~Ls~N~l~~l-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~  139 (229)
T 3e6j_A           64 INLKELYLGSNQLGALPVG--VFDSLTQLTVLDLGTNQLTVL-PSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTH  139 (229)
T ss_dssp             TTCCEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSE
T ss_pred             cCCcEEECCCCCCCCcChh--hcccCCCcCEEECCCCcCCcc-ChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCE
Confidence            6899999999999865555  678999999999999999964 4566789999999  9999998 78999999999999


Q ss_pred             EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCC
Q 041168          131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVP  172 (177)
Q Consensus       131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p  172 (177)
                      |+|++|  .+   ....+..+..+++|+.|+|++|++.+..+
T Consensus       140 L~L~~N--~l---~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          140 LALDQN--QL---KSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             EECCSS--CC---CCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             EECCCC--cC---CccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            999999  55   44444668899999999999999987654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.58  E-value=4.2e-15  Score=117.65  Aligned_cols=124  Identities=27%  Similarity=0.325  Sum_probs=96.1

Q ss_pred             CCCCCCccceEEEcCC-----------CCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCc
Q 041168           36 ENRDCCLWDGIKCNED-----------NGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLS  104 (177)
Q Consensus        36 ~~~~~C~w~gv~c~~~-----------~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~  104 (177)
                      .....|.|.++ |+..           ..++++|++++|.+++..+.  .+..+++|++|++++|.+++. .+..|..++
T Consensus        25 ~~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~  100 (353)
T 2z80_A           25 QASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNS--DLQRCVNLQALVLTSNGINTI-EEDSFSSLG  100 (353)
T ss_dssp             --CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTT--TTTTCTTCCEEECTTSCCCEE-CTTTTTTCT
T ss_pred             ccCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHH--HhccCCCCCEEECCCCccCcc-CHhhcCCCC
Confidence            34567899988 6421           24799999999999976666  789999999999999999865 567799999


Q ss_pred             cccc--cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhH--HhhcCCCCCEEEeeccc-CCC
Q 041168          105 RLTA--LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLAN--LAEKLANLKVLHLGQVN-TAS  169 (177)
Q Consensus       105 ~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~--~~~~l~~L~~L~Ls~N~-l~g  169 (177)
                      +|++  +++|++.+..+..+..+++|++|++++|+  +   . .+|.  .+..+++|++|++++|. +.+
T Consensus       101 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~--l---~-~l~~~~~~~~l~~L~~L~l~~n~~~~~  164 (353)
T 2z80_A          101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP--Y---K-TLGETSLFSHLTKLQILRVGNMDTFTK  164 (353)
T ss_dssp             TCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCC--C---S-SSCSSCSCTTCTTCCEEEEEESSSCCE
T ss_pred             CCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCC--C---c-ccCchhhhccCCCCcEEECCCCccccc
Confidence            9999  99999985444458899999999999994  4   2 3443  56778888888888874 443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.58  E-value=1.1e-14  Score=111.55  Aligned_cols=112  Identities=21%  Similarity=0.233  Sum_probs=97.3

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      .++++|++++|.+++..+.  .+..+++|++|++++|.+++. .+..+..+++|++  +++|++.+..+..+..+++|++
T Consensus       109 ~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  185 (272)
T 3rfs_A          109 TNLKELVLVENQLQSLPDG--VFDKLTNLTYLNLAHNQLQSL-PKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKD  185 (272)
T ss_dssp             TTCCEEECTTSCCCCCCTT--TTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cCCCEEECCCCcCCccCHH--HhccCCCCCEEECCCCccCcc-CHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCE
Confidence            6899999999999976666  688999999999999999965 5566789999999  9999999777777899999999


Q ss_pred             EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCC
Q 041168          131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVP  172 (177)
Q Consensus       131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p  172 (177)
                      |++++|  .+   .+..+..+..+++|++|++++|++.+..|
T Consensus       186 L~L~~N--~l---~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  222 (272)
T 3rfs_A          186 LRLYQN--QL---KSVPDGVFDRLTSLQYIWLHDNPWDCTCP  222 (272)
T ss_dssp             EECCSS--CC---SCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             EECCCC--cC---CccCHHHHhCCcCCCEEEccCCCccccCc
Confidence            999999  55   55566668899999999999999987766

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.58  E-value=4.5e-15  Score=118.13  Aligned_cols=121  Identities=26%  Similarity=0.256  Sum_probs=84.9

Q ss_pred             CccceEEEcCC---------CCcEEEEEccCCccccccCCCcccc-cCcCCcEEEccCCCCCCCCCCccccCCccccc--
Q 041168           41 CLWDGIKCNED---------NGHVIRLDLTSSCLYGSINSSSSLF-QLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--  108 (177)
Q Consensus        41 C~w~gv~c~~~---------~~~l~~L~l~~n~l~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--  108 (177)
                      |.+..+.|...         ...++.|+|++|.+++..+.  .+. .+++|++|+|++|.++.. .+..|..+++|++  
T Consensus        18 C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~--~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~~L~~L~   94 (361)
T 2xot_A           18 CASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAE--WTPTRLTNLHSLLLSHNHLNFI-SSEAFVPVPNLRYLD   94 (361)
T ss_dssp             EETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTT--SSSSCCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEE
T ss_pred             ECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChh--hhhhcccccCEEECCCCcCCcc-ChhhccCCCCCCEEE
Confidence            67777888432         24577888888888865555  555 788888888888888754 4456777888888  


Q ss_pred             cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCC
Q 041168          109 LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAS  169 (177)
Q Consensus       109 ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g  169 (177)
                      |++|++....+..|..+++|++|+|++|  .+   ....+..|..+++|++|+|++|.|++
T Consensus        95 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N--~i---~~~~~~~~~~l~~L~~L~L~~N~l~~  150 (361)
T 2xot_A           95 LSSNHLHTLDEFLFSDLQALEVLLLYNN--HI---VVVDRNAFEDMAQLQKLYLSQNQISR  150 (361)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSS--CC---CEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred             CCCCcCCcCCHHHhCCCcCCCEEECCCC--cc---cEECHHHhCCcccCCEEECCCCcCCe
Confidence            7888877655556777777888888777  34   33345566667777777777777664

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.58  E-value=8.2e-15  Score=104.33  Aligned_cols=104  Identities=30%  Similarity=0.344  Sum_probs=49.5

Q ss_pred             cEEEEEccCCccc-cccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           54 HVIRLDLTSSCLY-GSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        54 ~l~~L~l~~n~l~-~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      +++.|++++|.++ +.+|.  .+..+++|++|++++|.++.  + ..+..+++|++  +++|.+.+.+|..+..+++|++
T Consensus        25 ~L~~L~l~~n~l~~~~i~~--~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           25 AVRELVLDNCKSNDGKIEG--LTAEFVNLEFLSLINVGLIS--V-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             SCSEEECCSCBCBTTBCSS--CCGGGGGCCEEEEESSCCCC--C-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             cCCEEECCCCCCChhhHHH--HHHhCCCCCEEeCcCCCCCC--h-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            4555555555554 33444  44445555555555555542  2 34444555555  5555554444444444555555


Q ss_pred             EeCCCCcCCcccCCCchh--HHhhcCCCCCEEEeecccCC
Q 041168          131 LDLSFNNFHLKLQGPSLA--NLAEKLANLKVLHLGQVNTA  168 (177)
Q Consensus       131 L~Ls~N~~~l~~~~~~~p--~~~~~l~~L~~L~Ls~N~l~  168 (177)
                      |++++|  .+   .. ++  ..+..+++|++|++++|.++
T Consensus       100 L~Ls~N--~l---~~-~~~~~~l~~l~~L~~L~l~~N~l~  133 (168)
T 2ell_A          100 LNLSGN--KL---KD-ISTLEPLKKLECLKSLDLFNCEVT  133 (168)
T ss_dssp             EECBSS--SC---CS-SGGGGGGSSCSCCCEEECCSSGGG
T ss_pred             EeccCC--cc---Cc-chhHHHHhcCCCCCEEEeeCCcCc
Confidence            555555  22   11 11  34444555555555555544

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.57  E-value=2.6e-14  Score=110.66  Aligned_cols=113  Identities=27%  Similarity=0.217  Sum_probs=81.3

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      +++++|++++|.++ .+|.  .+..+++|++|++++|+++.. .+..|..+++|++  +++|++.+..+..+..+++|++
T Consensus        77 ~~L~~L~Ls~N~l~-~l~~--~~~~l~~L~~L~l~~N~l~~l-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  152 (290)
T 1p9a_G           77 PVLGTLDLSHNQLQ-SLPL--LGQTLPALTVLDVSFNRLTSL-PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK  152 (290)
T ss_dssp             TTCCEEECCSSCCS-SCCC--CTTTCTTCCEEECCSSCCCCC-CSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             CcCCEEECCCCcCC-cCch--hhccCCCCCEEECCCCcCccc-CHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCE
Confidence            56777777777776 4565  667778888888888888754 4466777888888  8888887655556677888888


Q ss_pred             EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCccc
Q 041168          131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYAL  175 (177)
Q Consensus       131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~l  175 (177)
                      |+|++|  .+   ....+..+..+++|++|+|++|+++ .+|..+
T Consensus       153 L~L~~N--~l---~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~  191 (290)
T 1p9a_G          153 LSLANN--NL---TELPAGLLNGLENLDTLLLQENSLY-TIPKGF  191 (290)
T ss_dssp             EECTTS--CC---SCCCTTTTTTCTTCCEEECCSSCCC-CCCTTT
T ss_pred             EECCCC--cC---CccCHHHhcCcCCCCEEECCCCcCC-ccChhh
Confidence            888888  44   3333344677888888888888887 466654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.57  E-value=1.6e-14  Score=103.51  Aligned_cols=105  Identities=19%  Similarity=0.183  Sum_probs=84.2

Q ss_pred             EEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeC
Q 041168           56 IRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDL  133 (177)
Q Consensus        56 ~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~L  133 (177)
                      +.+++++|.++. +|.  .+  .+.|++|+|++|.+++. .|..|..+++|++  |++|++.+..+..|..+++|++|+|
T Consensus        12 ~~l~~s~n~l~~-ip~--~~--~~~l~~L~L~~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L   85 (170)
T 3g39_A           12 TTVDCSGKSLAS-VPT--GI--PTTTQVLYLYDNQITKL-EPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL   85 (170)
T ss_dssp             TEEECTTSCCSS-CCS--CC--CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CEEEeCCCCcCc-cCc--cC--CCCCcEEEcCCCcCCcc-ChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence            367888888874 665  44  37889999999999975 6778889999999  9999998666666789999999999


Q ss_pred             CCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCC
Q 041168          134 SFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTV  171 (177)
Q Consensus       134 s~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~  171 (177)
                      ++|  .+   ....+..|..+++|++|+|++|++.+..
T Consensus        86 ~~N--~l---~~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           86 NDN--QL---KSIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             CSS--CC---CCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             CCC--cc---CEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            999  45   4444556888999999999999988654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.57  E-value=5.3e-15  Score=124.21  Aligned_cols=116  Identities=21%  Similarity=0.190  Sum_probs=99.8

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      .++++|+|++|.|++..+.  .|.++++|++|+|++|+++.. .+..|..+++|++  +++|++.+..+..|+.+++|++
T Consensus        76 ~~L~~L~Ls~N~i~~i~~~--~f~~L~~L~~L~Ls~N~l~~l-~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~  152 (635)
T 4g8a_A           76 PELQVLDLSRCEIQTIEDG--AYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE  152 (635)
T ss_dssp             TTCCEEECTTCCCCEECTT--TTTTCTTCCEEECTTCCCCEE-CGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCE
T ss_pred             CCCCEEECCCCcCCCcChh--HhcCCCCCCEEEccCCcCCCC-CHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCe
Confidence            6899999999999976666  799999999999999999953 3467899999999  9999999766667999999999


Q ss_pred             EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCccc
Q 041168          131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYAL  175 (177)
Q Consensus       131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~l  175 (177)
                      |++++|.+.    ....|..+..+++|++|++++|++++..|..+
T Consensus       153 L~Ls~N~l~----~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l  193 (635)
T 4g8a_A          153 LNVAHNLIQ----SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL  193 (635)
T ss_dssp             EECCSSCCC----CCCCCGGGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred             eccccCccc----cCCCchhhccchhhhhhcccCccccccccccc
Confidence            999999543    23567889999999999999999997666654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.57  E-value=9.6e-15  Score=112.28  Aligned_cols=109  Identities=27%  Similarity=0.201  Sum_probs=66.8

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCC-CCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCC
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNH-FNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLE  129 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~  129 (177)
                      .++++|++++|.+++..+.  .+..+++|++|++++|. +... .+..+..+++|++  +++|.+.+..|..+..+++|+
T Consensus        56 ~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  132 (285)
T 1ozn_A           56 RNLTILWLHSNVLARIDAA--AFTGLALLEQLDLSDNAQLRSV-DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ  132 (285)
T ss_dssp             TTCCEEECCSSCCCEECTT--TTTTCTTCCEEECCSCTTCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             CCCCEEECCCCccceeCHh--hcCCccCCCEEeCCCCCCcccc-CHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCC
Confidence            4566666666666654455  56666666666666665 5533 3555666666666  666666655555666666677


Q ss_pred             EEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCC
Q 041168          130 SLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAS  169 (177)
Q Consensus       130 ~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g  169 (177)
                      +|++++|  .+   ....+..+..+++|++|++++|.+++
T Consensus       133 ~L~l~~n--~l---~~~~~~~~~~l~~L~~L~l~~n~l~~  167 (285)
T 1ozn_A          133 YLYLQDN--AL---QALPDDTFRDLGNLTHLFLHGNRISS  167 (285)
T ss_dssp             EEECCSS--CC---CCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred             EEECCCC--cc---cccCHhHhccCCCccEEECCCCcccc
Confidence            7777666  33   33333446666777777777777664

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.57  E-value=1.4e-14  Score=110.80  Aligned_cols=114  Identities=20%  Similarity=0.192  Sum_probs=73.9

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      .++++|++++|.+++..+.  .+..+++|++|++++|.+++. .+..+..+++|++  +++|.+.+..+..+..+++|++
T Consensus        52 ~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  128 (276)
T 2z62_A           52 PELQVLDLSRCEIQTIEDG--AYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE  128 (276)
T ss_dssp             TTCSEEECTTCCCCEECTT--TTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCE
T ss_pred             cCCcEEECCCCcCCccCHH--HccCCcCCCEEECCCCccCcc-ChhhhcCCccccEEECCCCCccccCchhcccCCCCCE
Confidence            4566666666666654444  566666677777777766643 4455666667776  6667666544445667777777


Q ss_pred             EeCCCCcCCcccCCC-chhHHhhcCCCCCEEEeecccCCCCCCcc
Q 041168          131 LDLSFNNFHLKLQGP-SLANLAEKLANLKVLHLGQVNTASTVPYA  174 (177)
Q Consensus       131 L~Ls~N~~~l~~~~~-~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~  174 (177)
                      |++++|.  +   .. .+|..+..+++|++|++++|++++..+..
T Consensus       129 L~l~~n~--l---~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~  168 (276)
T 2z62_A          129 LNVAHNL--I---QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD  168 (276)
T ss_dssp             EECCSSC--C---CCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred             EECcCCc--c---ceecCchhhccCCCCCEEECCCCCCCcCCHHH
Confidence            7777773  3   22 35777778888888888888877644433

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.56  E-value=9.7e-15  Score=119.70  Aligned_cols=123  Identities=24%  Similarity=0.211  Sum_probs=85.3

Q ss_pred             cceEEEcCC---------CCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--ccc
Q 041168           43 WDGIKCNED---------NGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSN  111 (177)
Q Consensus        43 w~gv~c~~~---------~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~  111 (177)
                      |..|.|...         ..+++.|++++|.+++..+.  .|..+++|++|+|++|.+++. .|..|..+++|++  |++
T Consensus        13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~   89 (477)
T 2id5_A           13 DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQD--EFASFPHLEELELNENIVSAV-EPGAFNNLFNLRTLGLRS   89 (477)
T ss_dssp             TTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTT--TTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHh--HccCCCCCCEEECCCCccCEe-ChhhhhCCccCCEEECCC
Confidence            556777432         24678888888888876666  778888888888888888765 5777888888888  888


Q ss_pred             ccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCc
Q 041168          112 PSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPY  173 (177)
Q Consensus       112 n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~  173 (177)
                      |++....+..|..+++|++|+|++|  .+   ....+..+..+++|++|++++|.+.+..|.
T Consensus        90 n~l~~~~~~~~~~l~~L~~L~Ls~n--~i---~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  146 (477)
T 2id5_A           90 NRLKLIPLGVFTGLSNLTKLDISEN--KI---VILLDYMFQDLYNLKSLEVGDNDLVYISHR  146 (477)
T ss_dssp             SCCCSCCTTSSTTCTTCCEEECTTS--CC---CEECTTTTTTCTTCCEEEECCTTCCEECTT
T ss_pred             CcCCccCcccccCCCCCCEEECCCC--cc---ccCChhHccccccCCEEECCCCccceeChh
Confidence            8877554455677888888888887  34   334455566666666666666666544333

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.56  E-value=7.6e-15  Score=107.09  Aligned_cols=110  Identities=21%  Similarity=0.236  Sum_probs=93.2

Q ss_pred             EEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCc-cccCCccccc--cccccCCCCCChhhhCCCCCCEEe
Q 041168           56 IRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPS-EIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLD  132 (177)
Q Consensus        56 ~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~-~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~  132 (177)
                      +++++++|.++ .+|.  .+.  ..+++|++++|.+++. .+. .+..+++|++  |++|.+.+..|..|..+++|++|+
T Consensus        11 ~~l~~s~~~l~-~ip~--~~~--~~l~~L~l~~n~i~~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~   84 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPR--DIP--LHTTELLLNDNELGRI-SSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ   84 (192)
T ss_dssp             TEEECTTSCCS-SCCS--CCC--TTCSEEECCSCCCCSB-CCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             CEEEcCCCCcC-cCcc--CCC--CCCCEEECCCCcCCcc-CCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEE
Confidence            58999999997 5676  554  3899999999999854 333 4889999999  999999988899999999999999


Q ss_pred             CCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCcccc
Q 041168          133 LSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYALA  176 (177)
Q Consensus       133 Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~l~  176 (177)
                      |++|  .+   .+..+..|..+++|++|+|++|+|++..|..++
T Consensus        85 Ls~N--~l---~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  123 (192)
T 1w8a_A           85 LGEN--KI---KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFE  123 (192)
T ss_dssp             CCSC--CC---CEECSSSSTTCTTCCEEECCSSCCCEECTTSST
T ss_pred             CCCC--cC---CccCHHHhcCCCCCCEEECCCCcCCeeCHHHhh
Confidence            9999  55   555566688999999999999999987777654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.56  E-value=1.2e-14  Score=122.34  Aligned_cols=111  Identities=22%  Similarity=0.171  Sum_probs=85.5

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCC-CCChhhhCCCCCC
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFG-QIPAELLELSDLE  129 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~-~~p~~~~~l~~L~  129 (177)
                      .++++|++++|.+++..|.  .+.++++|++|++++|.++.. .+..++.+++|++  +++|.+.+ .+|..++.+++|+
T Consensus        80 ~~L~~L~Ls~n~l~~~~p~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~  156 (606)
T 3vq2_A           80 HHLSNLILTGNPIQSFSPG--SFSGLTSLENLVAVETKLASL-ESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV  156 (606)
T ss_dssp             TTCCEEECTTCCCCCCCTT--SSTTCTTCCEEECTTSCCCCS-SSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCC
T ss_pred             hhcCEeECCCCcccccChh--hcCCcccCCEEEccCCccccc-cccccCCCCCCCEEeCCCCcccceechHhHhhcCCCC
Confidence            5677788888877766666  777788888888888888754 4466888888888  88888875 5789999999999


Q ss_pred             EEeCCCCcCCcccCCCchhHHhhcCCCC----CEEEeecccCCCCC
Q 041168          130 SLDLSFNNFHLKLQGPSLANLAEKLANL----KVLHLGQVNTASTV  171 (177)
Q Consensus       130 ~L~Ls~N~~~l~~~~~~~p~~~~~l~~L----~~L~Ls~N~l~g~~  171 (177)
                      +|++++|  .+   .+..+..+..+++|    .+|++++|.+++..
T Consensus       157 ~L~Ls~n--~l---~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~  197 (606)
T 3vq2_A          157 HVDLSYN--YI---QTITVNDLQFLRENPQVNLSLDMSLNPIDFIQ  197 (606)
T ss_dssp             EEECCSS--CC---CEECTTTTHHHHHCTTCCCEEECTTCCCCEEC
T ss_pred             EEEccCC--cc---eecChhhhhhhhccccccceeeccCCCcceeC
Confidence            9999999  45   44455556655555    48999999998533

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.55  E-value=3.1e-14  Score=108.81  Aligned_cols=108  Identities=25%  Similarity=0.208  Sum_probs=47.7

Q ss_pred             cEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEE
Q 041168           54 HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESL  131 (177)
Q Consensus        54 ~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L  131 (177)
                      ++++|++++|.+.+..+.  .+..+++|++|++++|.++.. .+..|..+++|++  +++|.+.+..+..+..+++|++|
T Consensus        86 ~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  162 (270)
T 2o6q_A           86 NLETLWVTDNKLQALPIG--VFDQLVNLAELRLDRNQLKSL-PPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKEL  162 (270)
T ss_dssp             TCCEEECCSSCCCCCCTT--TTTTCSSCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCEEECCCCcCCcCCHh--HcccccCCCEEECCCCccCee-CHHHhCcCcCCCEEECCCCcCCccCHhHccCCccccee
Confidence            344444444444432222  334444444444444444432 2333444444444  44444443333334445555555


Q ss_pred             eCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCC
Q 041168          132 DLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAS  169 (177)
Q Consensus       132 ~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g  169 (177)
                      ++++|  .+   ....+..+..+++|++|+|++|++++
T Consensus       163 ~L~~n--~l---~~~~~~~~~~l~~L~~L~L~~N~l~~  195 (270)
T 2o6q_A          163 RLYNN--QL---KRVPEGAFDKLTELKTLKLDNNQLKR  195 (270)
T ss_dssp             ECCSS--CC---SCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             EecCC--cC---cEeChhHhccCCCcCEEECCCCcCCc
Confidence            55555  22   22222334555555555555555553

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.55  E-value=9.8e-15  Score=118.75  Aligned_cols=112  Identities=22%  Similarity=0.255  Sum_probs=83.5

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      .+++.|++++|.+.+..+.  .+..+++|++|++++|.+++. .|..+..+++|++  +++|++.+..|..+..+++|++
T Consensus       299 ~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  375 (455)
T 3v47_A          299 TDLEQLTLAQNEINKIDDN--AFWGLTHLLKLNLSQNFLGSI-DSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKE  375 (455)
T ss_dssp             TTCCEEECTTSCCCEECTT--TTTTCTTCCEEECCSSCCCEE-CGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             CCCCEEECCCCcccccChh--HhcCcccCCEEECCCCccCCc-ChhHhcCcccCCEEECCCCcccccChhhccccccccE
Confidence            5677777777777766666  677777888888888887754 5667777788887  7888887666777788888888


Q ss_pred             EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCC
Q 041168          131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVP  172 (177)
Q Consensus       131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p  172 (177)
                      |++++|  .+   ....+..+..+++|++|+|++|++++..|
T Consensus       376 L~L~~N--~l---~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          376 LALDTN--QL---KSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             EECCSS--CC---SCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             EECCCC--cc---ccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            888888  44   34334456778888888888888888776

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.55  E-value=8e-15  Score=113.73  Aligned_cols=114  Identities=25%  Similarity=0.248  Sum_probs=57.9

Q ss_pred             cEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCC-CCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           54 HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNF-SEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        54 ~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      ++++|++++|.+.+..+.  .+..+++|++|++++|.+++ . .|..+..+++|++  +++|.+.+..|..+..+++|++
T Consensus       127 ~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  203 (306)
T 2z66_A          127 NLIYLDISHTHTRVAFNG--IFNGLSSLEVLKMAGNSFQENF-LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV  203 (306)
T ss_dssp             TCCEEECTTSCCEECSTT--TTTTCTTCCEEECTTCEEGGGE-ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             CCCEEECCCCcCCccchh--hcccCcCCCEEECCCCcccccc-chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCE
Confidence            344444444444433333  34444555555555555443 2 3444555555555  5555555444555555556666


Q ss_pred             EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCccc
Q 041168          131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYAL  175 (177)
Q Consensus       131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~l  175 (177)
                      |++++|  .+   ....+..+..+++|++|++++|++++..|..+
T Consensus       204 L~L~~N--~l---~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  243 (306)
T 2z66_A          204 LNMSHN--NF---FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL  243 (306)
T ss_dssp             EECTTS--CC---SBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred             EECCCC--cc---CccChhhccCcccCCEeECCCCCCcccCHHHH
Confidence            666655  23   22223345556666666666666665555443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.55  E-value=2.4e-14  Score=110.03  Aligned_cols=115  Identities=22%  Similarity=0.188  Sum_probs=71.6

Q ss_pred             CcEEEEEccCCc-cccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCC
Q 041168           53 GHVIRLDLTSSC-LYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLE  129 (177)
Q Consensus        53 ~~l~~L~l~~n~-l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~  129 (177)
                      .++++|++++|. +....+.  .+..+++|++|++++|.+++. .+..+..+++|++  +++|.+.+..+..+..+++|+
T Consensus        80 ~~L~~L~l~~n~~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  156 (285)
T 1ozn_A           80 ALLEQLDLSDNAQLRSVDPA--TFHGLGRLHTLHLDRCGLQEL-GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT  156 (285)
T ss_dssp             TTCCEEECCSCTTCCCCCTT--TTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             cCCCEEeCCCCCCccccCHH--HhcCCcCCCEEECCCCcCCEE-CHhHhhCCcCCCEEECCCCcccccCHhHhccCCCcc
Confidence            456777777775 5544455  566667777777777777654 4556666677776  667776654445566677777


Q ss_pred             EEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCccc
Q 041168          130 SLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYAL  175 (177)
Q Consensus       130 ~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~l  175 (177)
                      +|++++|  .+   ....+..+..+++|++|++++|.+++..|..+
T Consensus       157 ~L~l~~n--~l---~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  197 (285)
T 1ozn_A          157 HLFLHGN--RI---SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF  197 (285)
T ss_dssp             EEECCSS--CC---CEECTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred             EEECCCC--cc---cccCHHHhcCccccCEEECCCCcccccCHhHc
Confidence            7777777  33   22223346666777777777777665555544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.54  E-value=1.5e-14  Score=110.68  Aligned_cols=114  Identities=22%  Similarity=0.158  Sum_probs=64.1

Q ss_pred             cEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEE
Q 041168           54 HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESL  131 (177)
Q Consensus        54 ~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L  131 (177)
                      ++++|++++|.+++..+.  .+..+++|++|++++|.++.. .+..+..+++|++  +++|.+.+..+..+..+++|++|
T Consensus        29 ~l~~L~ls~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSY--SFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL  105 (276)
T ss_dssp             TCCEEECTTCCCCEECTT--TTTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred             CccEEECCCCcccccCHh--HhccccCCcEEECCCCcCCcc-CHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence            466666666666654444  555666666666666666543 3345556666666  66666655555556666666666


Q ss_pred             eCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCC-CCCccc
Q 041168          132 DLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAS-TVPYAL  175 (177)
Q Consensus       132 ~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g-~~p~~l  175 (177)
                      ++++|  .+   ....+..+..+++|++|++++|.+.+ .+|..+
T Consensus       106 ~l~~n--~l---~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~  145 (276)
T 2z62_A          106 VAVET--NL---ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF  145 (276)
T ss_dssp             ECTTS--CC---CCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGG
T ss_pred             ECCCC--Cc---cccCchhcccCCCCCEEECcCCccceecCchhh
Confidence            66666  33   22223245566666666666666654 234443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.54  E-value=6.8e-15  Score=117.81  Aligned_cols=112  Identities=14%  Similarity=0.068  Sum_probs=59.2

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      .+++.|+++++.++. +|.. .+..+++|++|++++|.++.. .+..|..+++|++  +++|.+.+..|..+..+++|++
T Consensus        45 ~~l~~l~l~~~~l~~-l~~~-~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  121 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRK-LPAA-LLDSFRQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  121 (390)
T ss_dssp             CCCSEEEEESCEESE-ECTH-HHHHCCCCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCceEEEecCCchhh-CChh-HhcccccCcEEECCCCccccc-ChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence            345566666666553 3320 245556666666666666543 3345555666666  5666665544555556666666


Q ss_pred             EeCCCCcCCcccCCCchhHH-hhcCCCCCEEEeecccCCCCCCc
Q 041168          131 LDLSFNNFHLKLQGPSLANL-AEKLANLKVLHLGQVNTASTVPY  173 (177)
Q Consensus       131 L~Ls~N~~~l~~~~~~~p~~-~~~l~~L~~L~Ls~N~l~g~~p~  173 (177)
                      |++++|  .+   . .+|.. +..+++|++|++++|.+.+..|.
T Consensus       122 L~L~~n--~l---~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~  159 (390)
T 3o6n_A          122 LVLERN--DL---S-SLPRGIFHNTPKLTTLSMSNNNLERIEDD  159 (390)
T ss_dssp             EECCSS--CC---C-CCCTTTTTTCTTCCEEECCSSCCCBCCTT
T ss_pred             EECCCC--cc---C-cCCHHHhcCCCCCcEEECCCCccCccChh
Confidence            666666  33   2 23322 35555555555555555544333

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.54  E-value=3.2e-15  Score=129.09  Aligned_cols=111  Identities=28%  Similarity=0.327  Sum_probs=93.6

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      ..|+.|+|++|.+. .++.  .+..+++|++|+|++|.|+ . +|..|..+++|++  |++|.|. .+|..|+.+++|++
T Consensus       224 ~~L~~L~Ls~n~l~-~l~~--~~~~l~~L~~L~Ls~N~l~-~-lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~  297 (727)
T 4b8c_D          224 QLWHALDLSNLQIF-NISA--NIFKYDFLTRLYLNGNSLT-E-LPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKY  297 (727)
T ss_dssp             CCCCEEECTTSCCS-CCCG--GGGGCCSCSCCBCTTSCCS-C-CCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSE
T ss_pred             CCCcEEECCCCCCC-CCCh--hhcCCCCCCEEEeeCCcCc-c-cChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCE
Confidence            56788899998887 5666  6778899999999999998 5 8888888999999  8999988 77888999999999


Q ss_pred             EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCccc
Q 041168          131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYAL  175 (177)
Q Consensus       131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~l  175 (177)
                      |+|++|  .+    ..+|..|+.+++|++|+|++|.|++.+|..+
T Consensus       298 L~L~~N--~l----~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~  336 (727)
T 4b8c_D          298 FYFFDN--MV----TTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL  336 (727)
T ss_dssp             EECCSS--CC----CCCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred             EECCCC--CC----CccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence            999999  44    4578788899999999999999988777655

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.54  E-value=2.2e-14  Score=122.18  Aligned_cols=113  Identities=20%  Similarity=0.113  Sum_probs=62.4

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      .++++|++++|.+++..+.  .+..+++|++|++++|.+++. .|..+..+++|++  +++|.+.+..+..|..+++|++
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~  101 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAA--NFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTE  101 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGG--GGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSE
T ss_pred             CCCcEEECCCCCCCCcCHH--HHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCccCccChhhhccCCCCCE
Confidence            3566666666666654444  456666666666666666554 4555555666666  5566555333334555666666


Q ss_pred             EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCc
Q 041168          131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPY  173 (177)
Q Consensus       131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~  173 (177)
                      |++++|  .+   .+..|..+..+++|++|++++|.+++..|.
T Consensus       102 L~L~~n--~l---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  139 (680)
T 1ziw_A          102 LHLMSN--SI---QKIKNNPFVKQKNLITLDLSHNGLSSTKLG  139 (680)
T ss_dssp             EECCSS--CC---CCCCSCTTTTCTTCCEEECCSSCCSCCCCC
T ss_pred             EECCCC--cc---CccChhHccccCCCCEEECCCCcccccCch
Confidence            666665  33   233334455555555555555555544443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.53  E-value=3.5e-15  Score=126.91  Aligned_cols=115  Identities=16%  Similarity=0.197  Sum_probs=103.7

Q ss_pred             CCcEEEEEccCCccccc-----------------cCCCcccc--cCcCCcEEEccCCCCCCCCCCccccCCccccc--cc
Q 041168           52 NGHVIRLDLTSSCLYGS-----------------INSSSSLF--QLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LS  110 (177)
Q Consensus        52 ~~~l~~L~l~~n~l~~~-----------------~~~~~~l~--~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls  110 (177)
                      ..++++|++++|.+++.                 +|.  .+.  ++++|++|++++|.+.+. +|..++.+++|++  ++
T Consensus       205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~--~l~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls  281 (636)
T 4eco_A          205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE--DLKWDNLKDLTDVEVYNCPNLTK-LPTFLKALPEMQLINVA  281 (636)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS--CCCGGGCTTCCEEEEECCTTCSS-CCTTTTTCSSCCEEECT
T ss_pred             ccCCCEEECcCCccccccccccccccccchhcccCch--hhhhcccCCCCEEEecCCcCCcc-ChHHHhcCCCCCEEECc
Confidence            36899999999999985                 888  888  999999999999999988 9999999999999  99


Q ss_pred             ccc-CCC-CCChhhhCC------CCCCEEeCCCCcCCcccCCCchhH--HhhcCCCCCEEEeecccCCCCCCcccc
Q 041168          111 NPS-FFG-QIPAELLEL------SDLESLDLSFNNFHLKLQGPSLAN--LAEKLANLKVLHLGQVNTASTVPYALA  176 (177)
Q Consensus       111 ~n~-l~~-~~p~~~~~l------~~L~~L~Ls~N~~~l~~~~~~~p~--~~~~l~~L~~L~Ls~N~l~g~~p~~l~  176 (177)
                      +|+ +.+ .+|..++.+      ++|++|++++|  .+   . .+|.  .+..+++|++|++++|.++|.+| .++
T Consensus       282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n--~l---~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~  350 (636)
T 4eco_A          282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN--NL---K-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFG  350 (636)
T ss_dssp             TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS--CC---S-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCE
T ss_pred             CCCCCccccchHHHHhhhccccCCCCCEEECCCC--cC---C-ccCchhhhccCCCCCEEeCcCCcCccchh-hhC
Confidence            998 887 789888876      99999999999  55   4 6888  89999999999999999998888 553

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.53  E-value=5.8e-14  Score=101.00  Aligned_cols=104  Identities=19%  Similarity=0.169  Sum_probs=86.2

Q ss_pred             EEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeC
Q 041168           56 IRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDL  133 (177)
Q Consensus        56 ~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~L  133 (177)
                      +.+++++|.++ .+|.  .+.  +.|++|+|++|.+++. .|..|..+++|++  |++|++.+..+..+..+++|++|+|
T Consensus        15 ~~l~~~~n~l~-~iP~--~~~--~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L   88 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPA--GIP--TDKQRLWLNNNQITKL-EPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDL   88 (174)
T ss_dssp             SEEECCSSCCS-SCCS--CCC--TTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cEEEeCCCCCC-ccCC--CcC--CCCcEEEeCCCCcccc-CHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEEC
Confidence            47899999987 5666  553  8999999999999976 6788999999999  9999998655556789999999999


Q ss_pred             CCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCC
Q 041168          134 SFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAST  170 (177)
Q Consensus       134 s~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~  170 (177)
                      ++|  .+   ....+..+..+++|++|+|++|++...
T Consensus        89 ~~N--~l---~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           89 NDN--HL---KSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             CSS--CC---CCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             CCC--cc---ceeCHHHhccccCCCEEEeCCCCcccc
Confidence            999  45   443344588999999999999999854

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.53  E-value=1.4e-14  Score=122.30  Aligned_cols=110  Identities=13%  Similarity=0.038  Sum_probs=48.5

Q ss_pred             EEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEe
Q 041168           55 VIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLD  132 (177)
Q Consensus        55 l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~  132 (177)
                      ++.+++++|.+....+.  .+..+++|++|+|++|.+++. .|..|..+++|++  |++|.+.+..|..|+.+++|++|+
T Consensus        53 l~~l~l~~~~l~~lp~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           53 QKIVTFKNSTMRKLPAA--LLDSFRQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             CSEEEESSCEESEECTH--HHHHCCCCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             ceEEEeeCCCCCCcCHH--HHccCCCCcEEECCCCCCCCC-ChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            44455555544432222  234444555555555554432 3334444455554  445554444444444455555555


Q ss_pred             CCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCC
Q 041168          133 LSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVP  172 (177)
Q Consensus       133 Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p  172 (177)
                      |++|  .+   ....+..|..+++|++|+|++|.+++..|
T Consensus       130 L~~n--~l---~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~  164 (597)
T 3oja_B          130 LERN--DL---SSLPRGIFHNTPKLTTLSMSNNNLERIED  164 (597)
T ss_dssp             CCSS--CC---CCCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred             eeCC--CC---CCCCHHHhccCCCCCEEEeeCCcCCCCCh
Confidence            5544  22   22112223444444444444444444333

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.52  E-value=2.1e-14  Score=125.54  Aligned_cols=96  Identities=23%  Similarity=0.231  Sum_probs=53.0

Q ss_pred             ccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChh--hhCCCCCCEEeCCCCcCCcccCCCc-hh
Q 041168           74 SLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAE--LLELSDLESLDLSFNNFHLKLQGPS-LA  148 (177)
Q Consensus        74 ~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~--~~~l~~L~~L~Ls~N~~~l~~~~~~-~p  148 (177)
                      .+.++++|++|+|++|.+.+. .|..|..+++|++  |++|.+.+.+|..  +..+++|++|+|++|.  +   .+. .+
T Consensus        68 ~f~~L~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~--l---~~~~~~  141 (844)
T 3j0a_A           68 AFRNLPNLRILDLGSSKIYFL-HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ--I---RSLYLH  141 (844)
T ss_dssp             TTSSCTTCCEEECTTCCCCEE-CTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC--C---CCCCCC
T ss_pred             HhcCCCCCCEEECCCCcCccc-CHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc--c---cccccc
Confidence            445555555555555555543 4555555555555  5555555444443  5555666666666663  2   222 22


Q ss_pred             HHhhcCCCCCEEEeecccCCCCCCccc
Q 041168          149 NLAEKLANLKVLHLGQVNTASTVPYAL  175 (177)
Q Consensus       149 ~~~~~l~~L~~L~Ls~N~l~g~~p~~l  175 (177)
                      ..++.+++|++|+|++|.+++..|..+
T Consensus       142 ~~~~~L~~L~~L~Ls~N~i~~~~~~~l  168 (844)
T 3j0a_A          142 PSFGKLNSLKSIDFSSNQIFLVCEHEL  168 (844)
T ss_dssp             GGGGTCSSCCEEEEESSCCCCCCSGGG
T ss_pred             hhHhhCCCCCEEECCCCcCCeeCHHHc
Confidence            456666666777777666666555544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.52  E-value=2.4e-14  Score=113.88  Aligned_cols=111  Identities=22%  Similarity=0.223  Sum_probs=94.1

Q ss_pred             CCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCC
Q 041168           52 NGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLE  129 (177)
Q Consensus        52 ~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~  129 (177)
                      ..+|+.|++++|.+++..+.  .|..+++|++|+|++|.++.. .+..|..+++|++  |++|++.+..|..|..+++|+
T Consensus        63 l~~L~~L~L~~N~i~~i~~~--~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~  139 (361)
T 2xot_A           63 LTNLHSLLLSHNHLNFISSE--AFVPVPNLRYLDLSSNHLHTL-DEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQ  139 (361)
T ss_dssp             CTTCCEEECCSSCCCEECTT--TTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             ccccCEEECCCCcCCccChh--hccCCCCCCEEECCCCcCCcC-CHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCC
Confidence            36899999999999977666  799999999999999999964 4567899999999  999999987788999999999


Q ss_pred             EEeCCCCcCCcccCCCchhHH-h---hcCCCCCEEEeecccCCCCCC
Q 041168          130 SLDLSFNNFHLKLQGPSLANL-A---EKLANLKVLHLGQVNTASTVP  172 (177)
Q Consensus       130 ~L~Ls~N~~~l~~~~~~~p~~-~---~~l~~L~~L~Ls~N~l~g~~p  172 (177)
                      +|+|++|  .+   . .+|.. +   ..+++|+.|+|++|+|++ +|
T Consensus       140 ~L~L~~N--~l---~-~l~~~~~~~~~~l~~L~~L~L~~N~l~~-l~  179 (361)
T 2xot_A          140 KLYLSQN--QI---S-RFPVELIKDGNKLPKLMLLDLSSNKLKK-LP  179 (361)
T ss_dssp             EEECCSS--CC---C-SCCGGGTC----CTTCCEEECCSSCCCC-CC
T ss_pred             EEECCCC--cC---C-eeCHHHhcCcccCCcCCEEECCCCCCCc-cC
Confidence            9999999  44   3 35544 3   579999999999999985 44

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.51  E-value=3.9e-14  Score=119.13  Aligned_cols=109  Identities=17%  Similarity=0.147  Sum_probs=92.8

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      ..+++|++++|.+++..+.  .|..+++|++|++++|.+... .|..|..+++|++  +++|.+.+..|..++.+++|++
T Consensus        33 ~~l~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  109 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTIQNT--TFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKH  109 (606)
T ss_dssp             TTCCEEECTTCCCSEECTT--TSTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCE
T ss_pred             CcCcEEEccCCccCcCChh--HhccCccceEEECCCCcccee-ChhhccCccccCeeeCCCCcccccChhhhcccccccE
Confidence            5789999999999977777  899999999999999999876 6888999999999  9999998888888999999999


Q ss_pred             EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCC
Q 041168          131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAS  169 (177)
Q Consensus       131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g  169 (177)
                      |++++|  .+   ....+..+..+++|++|++++|.+++
T Consensus       110 L~L~~n--~i---~~l~~~~~~~l~~L~~L~L~~n~l~~  143 (606)
T 3t6q_A          110 LFFIQT--GI---SSIDFIPLHNQKTLESLYLGSNHISS  143 (606)
T ss_dssp             EECTTS--CC---SCGGGSCCTTCTTCCEEECCSSCCCC
T ss_pred             eecccc--Cc---ccCCcchhccCCcccEEECCCCcccc
Confidence            999999  44   34335567788888888888888876

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.51  E-value=1.2e-13  Score=100.82  Aligned_cols=108  Identities=22%  Similarity=0.247  Sum_probs=91.6

Q ss_pred             EEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeC
Q 041168           56 IRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDL  133 (177)
Q Consensus        56 ~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~L  133 (177)
                      +.+++++|.++ .+|.  .+  .+.|++|++++|.++ . +|..|..+++|++  |++|.+.+..+..|..+++|++|+|
T Consensus        13 ~~l~~~~~~l~-~ip~--~~--~~~l~~L~L~~n~i~-~-ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~L   85 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPK--GI--PRDVTELYLDGNQFT-L-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLIL   85 (193)
T ss_dssp             TEEECTTSCCS-SCCS--CC--CTTCCEEECCSSCCC-S-CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CEEEcCCCCCC-cCCC--CC--CCCCCEEECCCCcCc-h-hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEEC
Confidence            47899999988 5666  44  368999999999998 5 8899999999999  9999999877788999999999999


Q ss_pred             CCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCccc
Q 041168          134 SFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYAL  175 (177)
Q Consensus       134 s~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~l  175 (177)
                      ++|  .+   ....+..|..+++|++|+|++|.|+...+..+
T Consensus        86 s~N--~l---~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~  122 (193)
T 2wfh_A           86 SYN--RL---RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAF  122 (193)
T ss_dssp             CSS--CC---CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTT
T ss_pred             CCC--cc---CEeCHHHhCCCCCCCEEECCCCCCCeeChhhh
Confidence            999  55   55556779999999999999999996443333

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.51  E-value=2.8e-14  Score=123.21  Aligned_cols=93  Identities=31%  Similarity=0.326  Sum_probs=82.3

Q ss_pred             ccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHh
Q 041168           74 SLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLA  151 (177)
Q Consensus        74 ~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~  151 (177)
                      .+..++.|+.|+|++|.+. . +|..+..+++|++  |++|.+. .+|..|+.+++|++|+|++|  .+   . .+|..+
T Consensus       219 ~~~~l~~L~~L~Ls~n~l~-~-l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N--~l---~-~lp~~~  289 (727)
T 4b8c_D          219 SKYDDQLWHALDLSNLQIF-N-ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHN--RL---T-SLPAEL  289 (727)
T ss_dssp             ---CCCCCCEEECTTSCCS-C-CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTS--CC---S-SCCSSG
T ss_pred             hhccCCCCcEEECCCCCCC-C-CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCC--cC---C-ccChhh
Confidence            5778899999999999998 5 8888889999999  9999998 89999999999999999999  55   4 679899


Q ss_pred             hcCCCCCEEEeecccCCCCCCcccc
Q 041168          152 EKLANLKVLHLGQVNTASTVPYALA  176 (177)
Q Consensus       152 ~~l~~L~~L~Ls~N~l~g~~p~~l~  176 (177)
                      ..+++|++|+|++|.|+ .+|.+|+
T Consensus       290 ~~l~~L~~L~L~~N~l~-~lp~~~~  313 (727)
T 4b8c_D          290 GSCFQLKYFYFFDNMVT-TLPWEFG  313 (727)
T ss_dssp             GGGTTCSEEECCSSCCC-CCCSSTT
T ss_pred             cCCCCCCEEECCCCCCC-ccChhhh
Confidence            99999999999999997 7888775

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.51  E-value=4e-14  Score=100.71  Aligned_cols=111  Identities=24%  Similarity=0.142  Sum_probs=93.7

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCC-ChhhhCCCCCC
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQI-PAELLELSDLE  129 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~-p~~~~~l~~L~  129 (177)
                      +++++|++++|.+++.  .  .+..+++|++|++++|.+++. +|..+..+++|++  +++|.+.+.. +..+..+++|+
T Consensus        49 ~~L~~L~l~~n~l~~~--~--~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~  123 (168)
T 2ell_A           49 VNLEFLSLINVGLISV--S--NLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLK  123 (168)
T ss_dssp             GGCCEEEEESSCCCCC--S--SCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCC
T ss_pred             CCCCEEeCcCCCCCCh--h--hhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCC
Confidence            6899999999999865  5  789999999999999999976 7877788999999  9999998532 26889999999


Q ss_pred             EEeCCCCcCCcccCCCchh---HHhhcCCCCCEEEeecccCCCCCCcc
Q 041168          130 SLDLSFNNFHLKLQGPSLA---NLAEKLANLKVLHLGQVNTASTVPYA  174 (177)
Q Consensus       130 ~L~Ls~N~~~l~~~~~~~p---~~~~~l~~L~~L~Ls~N~l~g~~p~~  174 (177)
                      +|++++|.  +   ....+   ..+..+++|++|++++|.+. .+|++
T Consensus       124 ~L~l~~N~--l---~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~  165 (168)
T 2ell_A          124 SLDLFNCE--V---TNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS  165 (168)
T ss_dssp             EEECCSSG--G---GTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred             EEEeeCCc--C---cchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence            99999994  4   33323   47889999999999999987 46664

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.49  E-value=6e-14  Score=116.92  Aligned_cols=115  Identities=21%  Similarity=0.202  Sum_probs=76.4

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      .++++|++++|.+++..+.  .+..+++|++|++++|.++.. .|..|..+++|++  +++|++.+..+..++.+++|++
T Consensus        52 ~~L~~L~Ls~n~i~~i~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~  128 (570)
T 2z63_A           52 PELQVLDLSRCEIQTIEDG--AYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE  128 (570)
T ss_dssp             SSCCEEECTTCCCCEECTT--TTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCE
T ss_pred             CCceEEECCCCcCCccCcc--cccCchhCCEEeCcCCcCCcc-CHhhhcCccccccccccccccccCCCccccccccccE
Confidence            4667777777766655455  566677777777777776643 4456677777777  7777766443335677777777


Q ss_pred             EeCCCCcCCcccCCC-chhHHhhcCCCCCEEEeecccCCCCCCccc
Q 041168          131 LDLSFNNFHLKLQGP-SLANLAEKLANLKVLHLGQVNTASTVPYAL  175 (177)
Q Consensus       131 L~Ls~N~~~l~~~~~-~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~l  175 (177)
                      |++++|.  +   .. .+|..+..+++|++|++++|.+++..|..+
T Consensus       129 L~L~~n~--l---~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~  169 (570)
T 2z63_A          129 LNVAHNL--I---QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL  169 (570)
T ss_dssp             EECCSSC--C---CCCCCCGGGGGCTTCCEEECTTSCCCEECGGGG
T ss_pred             EecCCCc--c---ceecChhhhcccCCCCEEeCcCCccceecHHHc
Confidence            7777773  3   22 357777788888888888888776545443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.49  E-value=9.2e-14  Score=116.92  Aligned_cols=106  Identities=24%  Similarity=0.224  Sum_probs=94.3

Q ss_pred             cEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEE
Q 041168           54 HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESL  131 (177)
Q Consensus        54 ~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L  131 (177)
                      .++.|++++|.+++ +|   .+..+++|+.|+|++|.++ . +|..++.+++|++  |++|.+.+ +| .++.+++|++|
T Consensus       442 ~L~~L~Ls~n~l~~-lp---~~~~l~~L~~L~Ls~N~l~-~-lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L  513 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LC---HLEQLLLVTHLDLSHNRLR-A-LPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQEL  513 (567)
T ss_dssp             TCSEEECTTSCCSS-CC---CGGGGTTCCEEECCSSCCC-C-CCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEE
T ss_pred             CceEEEecCCCCCC-Cc---CccccccCcEeecCccccc-c-cchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEE
Confidence            57899999999986 54   4889999999999999999 5 8999999999999  99999985 67 89999999999


Q ss_pred             eCCCCcCCcccCCCch-hHHhhcCCCCCEEEeecccCCCCCC
Q 041168          132 DLSFNNFHLKLQGPSL-ANLAEKLANLKVLHLGQVNTASTVP  172 (177)
Q Consensus       132 ~Ls~N~~~l~~~~~~~-p~~~~~l~~L~~L~Ls~N~l~g~~p  172 (177)
                      +|++|  .+   .+.. |..+..+++|+.|+|++|++++..|
T Consensus       514 ~Ls~N--~l---~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          514 LLCNN--RL---QQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             ECCSS--CC---CSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             ECCCC--CC---CCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence            99999  55   4544 8899999999999999999997544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.49  E-value=6.8e-14  Score=102.24  Aligned_cols=104  Identities=19%  Similarity=0.233  Sum_probs=50.3

Q ss_pred             cEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEE
Q 041168           54 HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESL  131 (177)
Q Consensus        54 ~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L  131 (177)
                      ++++|++++|.+..  .+  .+..+++|++|++++|.+++. .+..+..+++|++  +++|.+.+..+..+..+++|++|
T Consensus        67 ~L~~L~l~~n~~~~--~~--~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L  141 (197)
T 4ezg_A           67 NIKDLTINNIHATN--YN--PISGLSNLERLRIMGKDVTSD-KIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSI  141 (197)
T ss_dssp             TCSEEEEESCCCSC--CG--GGTTCTTCCEEEEECTTCBGG-GSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEE
T ss_pred             CCCEEEccCCCCCc--ch--hhhcCCCCCEEEeECCccCcc-cChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEE
Confidence            45555555554331  12  344455555555555555533 3444555555555  55555544444455555555555


Q ss_pred             eCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCC
Q 041168          132 DLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTA  168 (177)
Q Consensus       132 ~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~  168 (177)
                      ++++|  ..   ...+| .+..+++|++|++++|.++
T Consensus       142 ~L~~n--~~---i~~~~-~l~~l~~L~~L~l~~n~i~  172 (197)
T 4ezg_A          142 DLSYN--GA---ITDIM-PLKTLPELKSLNIQFDGVH  172 (197)
T ss_dssp             ECCSC--TB---CCCCG-GGGGCSSCCEEECTTBCCC
T ss_pred             EccCC--CC---ccccH-hhcCCCCCCEEECCCCCCc
Confidence            55555  21   12233 3445555555555555554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.48  E-value=1.3e-13  Score=108.19  Aligned_cols=117  Identities=22%  Similarity=0.293  Sum_probs=96.5

Q ss_pred             CccceEEEcCC---------CCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--c
Q 041168           41 CLWDGIKCNED---------NGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--L  109 (177)
Q Consensus        41 C~w~gv~c~~~---------~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--l  109 (177)
                      |.|..+.|...         .++++.|++++|.+.+..+.  .+..+++|++|++++|.+++. .|..+..+++|++  +
T Consensus        33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKD--DFKGLQHLYALVLVNNKISKI-HEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTT--TTTTCTTCCEEECCSSCCCEE-CGGGSTTCTTCCEEEC
T ss_pred             ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHh--HhhCCCCCcEEECCCCccCcc-CHhHhhCcCCCCEEEC
Confidence            68999999532         25799999999999977677  799999999999999999965 6888999999999  9


Q ss_pred             ccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCC
Q 041168          110 SNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTA  168 (177)
Q Consensus       110 s~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~  168 (177)
                      ++|.+. .+|..+.  ++|++|++++|  .+   ....+..+..+++|++|++++|.++
T Consensus       110 ~~n~l~-~l~~~~~--~~L~~L~l~~n--~i---~~~~~~~~~~l~~L~~L~l~~n~l~  160 (332)
T 2ft3_A          110 SKNHLV-EIPPNLP--SSLVELRIHDN--RI---RKVPKGVFSGLRNMNCIEMGGNPLE  160 (332)
T ss_dssp             CSSCCC-SCCSSCC--TTCCEEECCSS--CC---CCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred             CCCcCC-ccCcccc--ccCCEEECCCC--cc---CccCHhHhCCCccCCEEECCCCccc
Confidence            999987 6666554  78999999999  45   4444556888899999999998885

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.48  E-value=9.1e-14  Score=115.82  Aligned_cols=116  Identities=22%  Similarity=0.144  Sum_probs=84.2

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      .+++.|++++|.+++..+.  .+..+++|++|++++|.+++. .+..|..+++|++  +++|.+.+..|..|..+++|++
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  104 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSY--SFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK  104 (570)
T ss_dssp             SSCCEEECCSCCCCEECTT--TTTTCSSCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred             ccccEEEccCCccCccChh--HhhCCCCceEEECCCCcCCcc-CcccccCchhCCEEeCcCCcCCccCHhhhcCcccccc
Confidence            4677888888888766666  677888888888888887754 4566777888888  7888877666677788888888


Q ss_pred             EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCC-CCCcccc
Q 041168          131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAS-TVPYALA  176 (177)
Q Consensus       131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g-~~p~~l~  176 (177)
                      |++++|  .+   ....+..++.+++|++|++++|.+++ .+|..++
T Consensus       105 L~L~~n--~l---~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~  146 (570)
T 2z63_A          105 LVAVET--NL---ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS  146 (570)
T ss_dssp             EECTTS--CC---CCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGG
T ss_pred             cccccc--cc---ccCCCccccccccccEEecCCCccceecChhhhc
Confidence            888888  33   22222247778888888888888776 4676654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.47  E-value=2.2e-13  Score=105.49  Aligned_cols=109  Identities=26%  Similarity=0.218  Sum_probs=80.9

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      .+++.|++++|.+++ ++.   ...+++|++|++++|.++ . +|..+..+++|++  +++|++.+..+..|..+++|++
T Consensus        55 ~~L~~L~L~~n~l~~-~~~---~~~l~~L~~L~Ls~N~l~-~-l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~  128 (290)
T 1p9a_G           55 TRLTQLNLDRAELTK-LQV---DGTLPVLGTLDLSHNQLQ-S-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE  128 (290)
T ss_dssp             TTCCEEECTTSCCCE-EEC---CSCCTTCCEEECCSSCCS-S-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCE
T ss_pred             CCCCEEECCCCccCc-ccC---CCCCCcCCEEECCCCcCC-c-CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCE
Confidence            456666666666664 232   256677777888888777 4 7777888888888  8888888666677888899999


Q ss_pred             EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCc
Q 041168          131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPY  173 (177)
Q Consensus       131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~  173 (177)
                      |++++|  .+   ....+..|..+++|+.|+|++|++++ +|.
T Consensus       129 L~L~~N--~l---~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~  165 (290)
T 1p9a_G          129 LYLKGN--EL---KTLPPGLLTPTPKLEKLSLANNNLTE-LPA  165 (290)
T ss_dssp             EECTTS--CC---CCCCTTTTTTCTTCCEEECTTSCCSC-CCT
T ss_pred             EECCCC--CC---CccChhhcccccCCCEEECCCCcCCc-cCH
Confidence            999998  45   44445557788999999999999885 444

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.47  E-value=3.1e-13  Score=105.82  Aligned_cols=91  Identities=22%  Similarity=0.322  Sum_probs=69.3

Q ss_pred             CCccceEEEcCC---------CCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--
Q 041168           40 CCLWDGIKCNED---------NGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--  108 (177)
Q Consensus        40 ~C~w~gv~c~~~---------~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--  108 (177)
                      .|.+..+.|...         .+.++.|++++|.+++..+.  .+..+++|++|++++|.+++. .|..+..+++|++  
T Consensus        30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~  106 (330)
T 1xku_A           30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDG--DFKNLKNLHTLILINNKISKI-SPGAFAPLVKLERLY  106 (330)
T ss_dssp             EEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTT--TTTTCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEE
T ss_pred             cCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChh--hhccCCCCCEEECCCCcCCee-CHHHhcCCCCCCEEE
Confidence            368899998532         25789999999999977666  789999999999999999965 6888999999998  


Q ss_pred             cccccCCCCCChhhhCCCCCCEEeCCCC
Q 041168          109 LSNPSFFGQIPAELLELSDLESLDLSFN  136 (177)
Q Consensus       109 ls~n~l~~~~p~~~~~l~~L~~L~Ls~N  136 (177)
                      +++|.+. .+|..+.  ++|++|++++|
T Consensus       107 Ls~n~l~-~l~~~~~--~~L~~L~l~~n  131 (330)
T 1xku_A          107 LSKNQLK-ELPEKMP--KTLQELRVHEN  131 (330)
T ss_dssp             CCSSCCS-BCCSSCC--TTCCEEECCSS
T ss_pred             CCCCcCC-ccChhhc--ccccEEECCCC
Confidence            8888876 4444322  44555555555

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.47  E-value=1.2e-13  Score=112.71  Aligned_cols=92  Identities=21%  Similarity=0.178  Sum_probs=78.1

Q ss_pred             cceEEEcCC---------CCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--ccc
Q 041168           43 WDGIKCNED---------NGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSN  111 (177)
Q Consensus        43 w~gv~c~~~---------~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~  111 (177)
                      |..|.|...         ..+++.|++++|.+++..+.  .|..+++|++|+|++|.+++. .+..|..+++|++  |++
T Consensus        56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~--~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQAD--TFRHLHHLEVLQLGRNSIRQI-EVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTT--TTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCS
T ss_pred             CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHH--HcCCCCCCCEEECCCCccCCc-ChhhccCcccCCEEECCC
Confidence            567888532         25799999999999987777  899999999999999999865 6678899999999  999


Q ss_pred             ccCCCCCChhhhCCCCCCEEeCCCCc
Q 041168          112 PSFFGQIPAELLELSDLESLDLSFNN  137 (177)
Q Consensus       112 n~l~~~~p~~~~~l~~L~~L~Ls~N~  137 (177)
                      |++.+..+..+..+++|++|+|++|.
T Consensus       133 n~l~~~~~~~~~~l~~L~~L~L~~N~  158 (452)
T 3zyi_A          133 NWLTVIPSGAFEYLSKLRELWLRNNP  158 (452)
T ss_dssp             SCCSBCCTTTSSSCTTCCEEECCSCC
T ss_pred             CcCCccChhhhcccCCCCEEECCCCC
Confidence            99986666678889999999999994

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.47  E-value=8.7e-14  Score=114.02  Aligned_cols=109  Identities=23%  Similarity=0.219  Sum_probs=79.8

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      .++++|++++|.+++..+.  .+.++++|++|+|++|.++.. .+..|..+++|++  +++|.+.+..+..+..+++|++
T Consensus        56 ~~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~  132 (477)
T 2id5_A           56 PHLEELELNENIVSAVEPG--AFNNLFNLRTLGLRSNRLKLI-PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKS  132 (477)
T ss_dssp             TTCCEEECTTSCCCEECTT--TTTTCTTCCEEECCSSCCCSC-CTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             CCCCEEECCCCccCEeChh--hhhCCccCCEEECCCCcCCcc-CcccccCCCCCCEEECCCCccccCChhHccccccCCE
Confidence            5788888888888876677  788888888888888888753 3345677888888  8888887766777777888888


Q ss_pred             EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCC
Q 041168          131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAS  169 (177)
Q Consensus       131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g  169 (177)
                      |++++|  .+   ....+..|..+++|++|++++|.+++
T Consensus       133 L~l~~n--~l---~~~~~~~~~~l~~L~~L~l~~n~l~~  166 (477)
T 2id5_A          133 LEVGDN--DL---VYISHRAFSGLNSLEQLTLEKCNLTS  166 (477)
T ss_dssp             EEECCT--TC---CEECTTSSTTCTTCCEEEEESCCCSS
T ss_pred             EECCCC--cc---ceeChhhccCCCCCCEEECCCCcCcc
Confidence            888877  33   33344456666666666666666654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.47  E-value=1.9e-13  Score=115.29  Aligned_cols=110  Identities=16%  Similarity=0.129  Sum_probs=96.3

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      .+|++|++++|.+.+..+.  .+..+++|++|+|++|.+++. .|..|+.+++|++  |++|.+.+..+..|+.+++|++
T Consensus        75 ~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~  151 (597)
T 3oja_B           75 RQVELLNLNDLQIEEIDTY--AFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT  151 (597)
T ss_dssp             CCCSEEECTTSCCCEECTT--TTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCcEEECCCCCCCCCChH--HhcCCCCCCEEECCCCcCCCC-CHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCE
Confidence            5789999999999987777  899999999999999999976 6677899999999  9999998555555799999999


Q ss_pred             EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCC
Q 041168          131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAST  170 (177)
Q Consensus       131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~  170 (177)
                      |+|++|  .+   .+..|..+..+++|++|+|++|.+++.
T Consensus       152 L~Ls~N--~l---~~~~~~~~~~l~~L~~L~L~~N~l~~~  186 (597)
T 3oja_B          152 LSMSNN--NL---ERIEDDTFQATTSLQNLQLSSNRLTHV  186 (597)
T ss_dssp             EECCSS--CC---CBCCTTTTTTCTTCCEEECTTSCCSBC
T ss_pred             EEeeCC--cC---CCCChhhhhcCCcCcEEECcCCCCCCc
Confidence            999999  55   566677899999999999999999864

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.47  E-value=4.3e-14  Score=117.52  Aligned_cols=117  Identities=21%  Similarity=0.177  Sum_probs=100.2

Q ss_pred             CCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCC-CCChhhhCCCCC
Q 041168           52 NGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFG-QIPAELLELSDL  128 (177)
Q Consensus        52 ~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~-~~p~~~~~l~~L  128 (177)
                      ..++++|++++|.+++..+.  .+..+++|++|++++|.+++. .+..++.+++|++  +++|.+.+ ..|..++.+++|
T Consensus        49 l~~L~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L  125 (549)
T 2z81_A           49 CANLQVLILKSSRINTIEGD--AFYSLGSLEHLDLSDNHLSSL-SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNL  125 (549)
T ss_dssp             CTTCCEEECTTSCCCEECTT--TTTTCTTCCEEECTTSCCCSC-CHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTC
T ss_pred             CCcccEEECCCCCcCccChh--hccccccCCEEECCCCccCcc-CHHHhccCCCCcEEECCCCcccccchhhhhhccCCc
Confidence            36899999999999987777  899999999999999999965 5556999999999  99999986 356789999999


Q ss_pred             CEEeCCCCcCCcccCCCchh-HHhhcCCCCCEEEeecccCCCCCCcccc
Q 041168          129 ESLDLSFNNFHLKLQGPSLA-NLAEKLANLKVLHLGQVNTASTVPYALA  176 (177)
Q Consensus       129 ~~L~Ls~N~~~l~~~~~~~p-~~~~~l~~L~~L~Ls~N~l~g~~p~~l~  176 (177)
                      ++|++++|  .+   .+.+| ..+..+++|++|++++|.+++.+|..++
T Consensus       126 ~~L~L~~n--~~---~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~  169 (549)
T 2z81_A          126 QTLRIGNV--ET---FSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK  169 (549)
T ss_dssp             CEEEEEES--SS---CCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT
T ss_pred             cEEECCCC--cc---ccccCHhhhhcccccCeeeccCCcccccChhhhh
Confidence            99999999  43   34454 5788999999999999999987877664

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.46  E-value=6.8e-14  Score=108.46  Aligned_cols=91  Identities=27%  Similarity=0.330  Sum_probs=48.9

Q ss_pred             cccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCC-CCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHh
Q 041168           75 LFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFG-QIPAELLELSDLESLDLSFNNFHLKLQGPSLANLA  151 (177)
Q Consensus        75 l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~-~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~  151 (177)
                      +..+++|++|++++|.+.+. .+..+..+++|++  +++|.+.+ .+|..+..+++|++|++++|  .+   ....|..+
T Consensus       122 ~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n--~l---~~~~~~~~  195 (306)
T 2z66_A          122 FLSLRNLIYLDISHTHTRVA-FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC--QL---EQLSPTAF  195 (306)
T ss_dssp             TTTCTTCCEEECTTSCCEEC-STTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS--CC---CEECTTTT
T ss_pred             hhhccCCCEEECCCCcCCcc-chhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC--Cc---CCcCHHHh
Confidence            44445555555555555433 4444555555555  55555543 34455555556666666655  33   33335556


Q ss_pred             hcCCCCCEEEeecccCCCCC
Q 041168          152 EKLANLKVLHLGQVNTASTV  171 (177)
Q Consensus       152 ~~l~~L~~L~Ls~N~l~g~~  171 (177)
                      ..+++|++|++++|.+++..
T Consensus       196 ~~l~~L~~L~L~~N~l~~~~  215 (306)
T 2z66_A          196 NSLSSLQVLNMSHNNFFSLD  215 (306)
T ss_dssp             TTCTTCCEEECTTSCCSBCC
T ss_pred             cCCCCCCEEECCCCccCccC
Confidence            66666666666666666533

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.46  E-value=2.9e-13  Score=108.30  Aligned_cols=110  Identities=16%  Similarity=0.129  Sum_probs=93.1

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      +++++|++++|.+.+..+.  .+..+++|++|++++|.+++. .|..+..+++|++  +++|.+....+..+..+++|++
T Consensus        69 ~~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~  145 (390)
T 3o6n_A           69 RQVELLNLNDLQIEEIDTY--AFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT  145 (390)
T ss_dssp             CCCSEEECTTSCCCEECTT--TTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             ccCcEEECCCCcccccChh--hccCCCCcCEEECCCCCCCcC-CHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcE
Confidence            5799999999999877666  789999999999999999975 6777899999999  9999998443344689999999


Q ss_pred             EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCC
Q 041168          131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAST  170 (177)
Q Consensus       131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~  170 (177)
                      |++++|  .+   ....+..+..+++|++|++++|.+++.
T Consensus       146 L~L~~n--~l---~~~~~~~~~~l~~L~~L~l~~n~l~~~  180 (390)
T 3o6n_A          146 LSMSNN--NL---ERIEDDTFQATTSLQNLQLSSNRLTHV  180 (390)
T ss_dssp             EECCSS--CC---CBCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred             EECCCC--cc---CccChhhccCCCCCCEEECCCCcCCcc
Confidence            999999  45   455566788999999999999998853

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.45  E-value=1.1e-13  Score=103.76  Aligned_cols=107  Identities=19%  Similarity=0.163  Sum_probs=77.9

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCC-CCCCCCCccccCCccccc--ccc-ccCCCCCChhhhCCCCC
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNH-FNFSEIPSEIKNLSRLTA--LSN-PSFFGQIPAELLELSDL  128 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~p~~~~~l~~L~~--ls~-n~l~~~~p~~~~~l~~L  128 (177)
                      .+++.|++++|.+++..+.  .+..+++|++|++++|. ++.. .+..|..+++|++  +++ |.+.+..+..|..+++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~--~~~~l~~L~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L  107 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSH--AFSNLPNISRIYVSIDVTLQQL-ESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLL  107 (239)
T ss_dssp             TTCCEEEEESCCCSEECTT--TTTTCTTCCEEEEECCSSCCEE-CTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTC
T ss_pred             CcccEEEEeCCcceEECHH--HccCCCCCcEEeCCCCCCccee-CHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCC
Confidence            4788899999988876665  67888889999999886 7743 3457788888888  887 88876555677888888


Q ss_pred             CEEeCCCCcCCcccCCCchhHHhhcCCCCC---EEEeecc-cCCC
Q 041168          129 ESLDLSFNNFHLKLQGPSLANLAEKLANLK---VLHLGQV-NTAS  169 (177)
Q Consensus       129 ~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~---~L~Ls~N-~l~g  169 (177)
                      ++|++++|.  +   . .+|. +..+++|+   +|++++| .+++
T Consensus       108 ~~L~l~~n~--l---~-~lp~-~~~l~~L~~L~~L~l~~N~~l~~  145 (239)
T 2xwt_C          108 KFLGIFNTG--L---K-MFPD-LTKVYSTDIFFILEITDNPYMTS  145 (239)
T ss_dssp             CEEEEEEEC--C---C-SCCC-CTTCCBCCSEEEEEEESCTTCCE
T ss_pred             CEEeCCCCC--C---c-cccc-cccccccccccEEECCCCcchhh
Confidence            888888883  3   2 2444 55566665   6666666 5553

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.45  E-value=2.9e-13  Score=98.85  Aligned_cols=108  Identities=16%  Similarity=0.177  Sum_probs=92.4

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      .+++.|++++|.+. .++   .+..+++|++|++++|.++   .++.+..+++|++  +++|.+.+..+..+..+++|++
T Consensus        44 ~~L~~L~l~~n~i~-~l~---~l~~l~~L~~L~l~~n~~~---~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           44 NSLTYITLANINVT-DLT---GIEYAHNIKDLTINNIHAT---NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HTCCEEEEESSCCS-CCT---TGGGCTTCSEEEEESCCCS---CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             CCccEEeccCCCcc-ChH---HHhcCCCCCEEEccCCCCC---cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            47899999999998 344   4788999999999999776   4458899999999  9999998777888999999999


Q ss_pred             EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCC
Q 041168          131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVP  172 (177)
Q Consensus       131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p  172 (177)
                      |++++|  .+   ....+..+..+++|++|++++|.+.+.+|
T Consensus       117 L~Ls~n--~i---~~~~~~~l~~l~~L~~L~L~~n~~i~~~~  153 (197)
T 4ezg_A          117 LDISHS--AH---DDSILTKINTLPKVNSIDLSYNGAITDIM  153 (197)
T ss_dssp             EECCSS--BC---BGGGHHHHTTCSSCCEEECCSCTBCCCCG
T ss_pred             EEecCC--cc---CcHhHHHHhhCCCCCEEEccCCCCccccH
Confidence            999999  55   55678889999999999999998333565

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.45  E-value=1.4e-13  Score=117.29  Aligned_cols=111  Identities=21%  Similarity=0.183  Sum_probs=73.1

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCC-ccccCCccccc--cccccCCCCCChhhhCCCCCC
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIP-SEIKNLSRLTA--LSNPSFFGQIPAELLELSDLE  129 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p-~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~  129 (177)
                      .++++|++++|.+++..+.  .+..+++|++|++++|.++.  +| ..|..+++|++  +++|++.+..|..++.+++|+
T Consensus        49 ~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~--l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  124 (680)
T 1ziw_A           49 SQLTSLDVGFNTISKLEPE--LCQKLPMLKVLNLQHNELSQ--LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI  124 (680)
T ss_dssp             TTCSEEECCSSCCCCCCTT--HHHHCTTCCEEECCSSCCCC--CCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCC
T ss_pred             CcCcEEECCCCccCccCHH--HHhcccCcCEEECCCCccCc--cChhhhccCCCCCEEECCCCccCccChhHccccCCCC
Confidence            4677777777777766666  67777777777777777764  44 35677777777  777777655556677777777


Q ss_pred             EEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCC
Q 041168          130 SLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVP  172 (177)
Q Consensus       130 ~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p  172 (177)
                      +|++++|  .+   .+..|..+..+++|++|++++|.+++..|
T Consensus       125 ~L~Ls~n--~l---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  162 (680)
T 1ziw_A          125 TLDLSHN--GL---SSTKLGTQVQLENLQELLLSNNKIQALKS  162 (680)
T ss_dssp             EEECCSS--CC---SCCCCCSSSCCTTCCEEECCSSCCCCBCH
T ss_pred             EEECCCC--cc---cccCchhhcccccCCEEEccCCcccccCH
Confidence            7777777  33   34445555666666666666666665433

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.44  E-value=2.8e-13  Score=118.50  Aligned_cols=122  Identities=22%  Similarity=0.194  Sum_probs=97.8

Q ss_pred             CccceEEEcCCCCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCC-CccccCCccccc--cccccCCCC
Q 041168           41 CLWDGIKCNEDNGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEI-PSEIKNLSRLTA--LSNPSFFGQ  117 (177)
Q Consensus        41 C~w~gv~c~~~~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-p~~~~~l~~L~~--ls~n~l~~~  117 (177)
                      |.|..|.+  ..+++++|++++|.+++..+.  .+..+++|++|+|++|.+.+. + |..|..+++|++  |++|.+.+.
T Consensus        14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~--~~~~l~~L~~LdLs~n~~~~~-i~~~~f~~L~~L~~L~Ls~N~l~~~   88 (844)
T 3j0a_A           14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTAS--SFPFLEQLQLLELGSQYTPLT-IDKEAFRNLPNLRILDLGSSKIYFL   88 (844)
T ss_dssp             CCSSCCCS--SCTTCCEEEEESCCCCEECSS--SCSSCCSCSEEEECTTCCCCE-ECTTTTSSCTTCCEEECTTCCCCEE
T ss_pred             CCCCCCCC--CCCCcCEEECCCCcCCccChh--HCcccccCeEEeCCCCCCccc-cCHHHhcCCCCCCEEECCCCcCccc
Confidence            45555655  346889999999999877777  888999999999999866544 5 677889999999  899999877


Q ss_pred             CChhhhCCCCCCEEeCCCCcCCcccCCCchhHH--hhcCCCCCEEEeecccCCCCCC
Q 041168          118 IPAELLELSDLESLDLSFNNFHLKLQGPSLANL--AEKLANLKVLHLGQVNTASTVP  172 (177)
Q Consensus       118 ~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~--~~~l~~L~~L~Ls~N~l~g~~p  172 (177)
                      .|..|..+++|++|+|++|  .+   .+.+|..  +..+++|++|+|++|.+++..|
T Consensus        89 ~p~~~~~l~~L~~L~Ls~n--~l---~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~  140 (844)
T 3j0a_A           89 HPDAFQGLFHLFELRLYFC--GL---SDAVLKDGYFRNLKALTRLDLSKNQIRSLYL  140 (844)
T ss_dssp             CTTSSCSCSSCCCEECTTC--CC---SSCCSTTCCCSSCSSCCEEEEESCCCCCCCC
T ss_pred             CHhHccCCcccCEeeCcCC--CC---CcccccCccccccCCCCEEECCCCccccccc
Confidence            7888999999999999999  45   4444444  7889999999999999887654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.44  E-value=7.9e-14  Score=110.30  Aligned_cols=116  Identities=24%  Similarity=0.162  Sum_probs=93.9

Q ss_pred             CCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCc-cccCCccccc--cccccCCCCCCh--hhhCCC
Q 041168           52 NGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPS-EIKNLSRLTA--LSNPSFFGQIPA--ELLELS  126 (177)
Q Consensus        52 ~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~-~~~~l~~L~~--ls~n~l~~~~p~--~~~~l~  126 (177)
                      ..+++.|++++|.+++..+.  .+..+++|++|++++|.++.  ++. .+..+++|++  +++|++.. +|.  .+..++
T Consensus        75 l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~  149 (353)
T 2z80_A           75 CVNLQALVLTSNGINTIEED--SFSSLGSLEHLDLSYNYLSN--LSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLT  149 (353)
T ss_dssp             CTTCCEEECTTSCCCEECTT--TTTTCTTCCEEECCSSCCSS--CCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCT
T ss_pred             CCCCCEEECCCCccCccCHh--hcCCCCCCCEEECCCCcCCc--CCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCC
Confidence            36899999999999977677  78999999999999999985  554 4889999999  99999984 554  788999


Q ss_pred             CCCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCcccc
Q 041168          127 DLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYALA  176 (177)
Q Consensus       127 ~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~l~  176 (177)
                      +|++|++++|+ .+   ....+..+..+++|++|++++|.+++..|..++
T Consensus       150 ~L~~L~l~~n~-~~---~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~  195 (353)
T 2z80_A          150 KLQILRVGNMD-TF---TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLK  195 (353)
T ss_dssp             TCCEEEEEESS-SC---CEECTTTTTTCCEEEEEEEEETTCCEECTTTTT
T ss_pred             CCcEEECCCCc-cc---cccCHHHccCCCCCCEEECCCCCcCccCHHHHh
Confidence            99999999983 13   233356688888999999999988876676654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.44  E-value=1.2e-12  Score=93.92  Aligned_cols=107  Identities=23%  Similarity=0.207  Sum_probs=87.5

Q ss_pred             EEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeC
Q 041168           56 IRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDL  133 (177)
Q Consensus        56 ~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~L  133 (177)
                      +.++++++.++. +|.  .+  .++|++|++++|.+++. .+..+..+++|++  +++|.+.+..+..+..+++|++|++
T Consensus        10 ~~l~~~~~~l~~-~p~--~~--~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   83 (177)
T 2o6r_A           10 TEIRCNSKGLTS-VPT--GI--PSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL   83 (177)
T ss_dssp             TEEECCSSCCSS-CCT--TC--CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CEEEecCCCCcc-CCC--CC--CCCCcEEEeCCCcccEe-CHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence            578999999884 555  33  47999999999999964 4566789999999  9999998666667899999999999


Q ss_pred             CCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCcc
Q 041168          134 SFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYA  174 (177)
Q Consensus       134 s~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~  174 (177)
                      ++|  .+   .+..+..+..+++|++|++++|.+++ +|..
T Consensus        84 ~~N--~l---~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~  118 (177)
T 2o6r_A           84 HEN--KL---QSLPNGVFDKLTQLKELALDTNQLKS-VPDG  118 (177)
T ss_dssp             CSS--CC---CCCCTTTTTTCTTCCEEECCSSCCSC-CCTT
T ss_pred             CCC--Cc---cccCHHHhhCCcccCEEECcCCcceE-eCHH
Confidence            999  55   55555567899999999999999986 4443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.44  E-value=1.8e-13  Score=113.14  Aligned_cols=122  Identities=16%  Similarity=0.117  Sum_probs=81.0

Q ss_pred             CccceEEEcCCCCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCcccc-CCccccc--cccccCCCC
Q 041168           41 CLWDGIKCNEDNGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIK-NLSRLTA--LSNPSFFGQ  117 (177)
Q Consensus        41 C~w~gv~c~~~~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~-~l~~L~~--ls~n~l~~~  117 (177)
                      |.+.++.+.. .++++.|++++|.+++..+.  .+..+++|+.|+|++|.+++. .|..+. .+++|++  |++|.+.+.
T Consensus       109 N~l~~~~~~~-l~~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~-~~~~l~~~l~~L~~L~Ls~N~l~~~  184 (487)
T 3oja_A          109 NNISRVSCSR-GQGKKNIYLANNKITMLRDL--DEGCRSRVQYLDLKLNEIDTV-NFAELAASSDTLEHLNLQYNFIYDV  184 (487)
T ss_dssp             SCCCCEEECC-CSSCEEEECCSSCCCSGGGB--CGGGGSSEEEEECTTSCCCEE-EGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred             CcCCCCCccc-cCCCCEEECCCCCCCCCCch--hhcCCCCCCEEECCCCCCCCc-ChHHHhhhCCcccEEecCCCccccc
Confidence            4455555543 25678888888887776666  677778888888888888765 555554 5777777  777777644


Q ss_pred             CChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCccc
Q 041168          118 IPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYAL  175 (177)
Q Consensus       118 ~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~l  175 (177)
                       | .+..+++|++|+|++|  .+   + .+|..+..+++|+.|+|++|.+++ +|..+
T Consensus       185 -~-~~~~l~~L~~L~Ls~N--~l---~-~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l  233 (487)
T 3oja_A          185 -K-GQVVFAKLKTLDLSSN--KL---A-FMGPEFQSAAGVTWISLRNNKLVL-IEKAL  233 (487)
T ss_dssp             -E-CCCCCTTCCEEECCSS--CC---C-EECGGGGGGTTCSEEECTTSCCCE-ECTTC
T ss_pred             -c-ccccCCCCCEEECCCC--CC---C-CCCHhHcCCCCccEEEecCCcCcc-cchhh
Confidence             2 2335777777777777  34   2 344456777777777777777774 55544

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.44  E-value=6.4e-14  Score=122.92  Aligned_cols=114  Identities=17%  Similarity=0.177  Sum_probs=95.6

Q ss_pred             CCcEEEEEccCCcccc-----------------ccCCCcccc--cCcCCcEEEccCCCCCCCCCCccccCCccccc--cc
Q 041168           52 NGHVIRLDLTSSCLYG-----------------SINSSSSLF--QLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LS  110 (177)
Q Consensus        52 ~~~l~~L~l~~n~l~~-----------------~~~~~~~l~--~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls  110 (177)
                      ..+++.|++++|.+++                 .+|.  .+.  ++++|++|+|++|.+.+. +|..+..+++|++  ++
T Consensus       447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~--~l~f~~L~~L~~L~Ls~N~l~~~-iP~~l~~L~~L~~L~Ls  523 (876)
T 4ecn_A          447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE--ELSWSNLKDLTDVELYNCPNMTQ-LPDFLYDLPELQSLNIA  523 (876)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS--CCCGGGCTTCCEEEEESCTTCCS-CCGGGGGCSSCCEEECT
T ss_pred             CCCCCEEECcCCcCCCCcccccccccccccccccCCh--hhhhccCCCCCEEECcCCCCCcc-ChHHHhCCCCCCEEECc
Confidence            3689999999999998                 3787  776  999999999999999887 9999999999999  99


Q ss_pred             ccc-CCC-CCChhhhCCC-------CCCEEeCCCCcCCcccCCCchhH--HhhcCCCCCEEEeecccCCCCCCcccc
Q 041168          111 NPS-FFG-QIPAELLELS-------DLESLDLSFNNFHLKLQGPSLAN--LAEKLANLKVLHLGQVNTASTVPYALA  176 (177)
Q Consensus       111 ~n~-l~~-~~p~~~~~l~-------~L~~L~Ls~N~~~l~~~~~~~p~--~~~~l~~L~~L~Ls~N~l~g~~p~~l~  176 (177)
                      +|+ +.+ .+|..++.++       +|++|+|++|  .+   . .+|.  .+..+++|++|+|++|.++ .+| .++
T Consensus       524 ~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N--~L---~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~  592 (876)
T 4ecn_A          524 CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN--NL---E-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFG  592 (876)
T ss_dssp             TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS--CC---C-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCC
T ss_pred             CCCCcccccchHHHHhhhhcccccCCccEEEeeCC--cC---C-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhc
Confidence            998 887 7787766655       8999999998  55   4 6777  7888888888888888887 677 443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.44  E-value=3.5e-13  Score=109.67  Aligned_cols=92  Identities=24%  Similarity=0.227  Sum_probs=74.0

Q ss_pred             cceEEEcCC---------CCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--ccc
Q 041168           43 WDGIKCNED---------NGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSN  111 (177)
Q Consensus        43 w~gv~c~~~---------~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~  111 (177)
                      +..|.|...         ..+++.|++++|.+++..+.  .|..+++|++|+|++|.++.. .+..|..+++|++  |++
T Consensus        45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~--~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~  121 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVN--SFKHLRHLEILQLSRNHIRTI-EIGAFNGLANLNTLELFD  121 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTT--TTSSCSSCCEEECCSSCCCEE-CGGGGTTCSSCCEEECCS
T ss_pred             CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHH--HhhCCCCCCEEECCCCcCCcc-ChhhccCCccCCEEECCC
Confidence            567888532         25688999999999877667  788899999999999998864 5577888888988  888


Q ss_pred             ccCCCCCChhhhCCCCCCEEeCCCCc
Q 041168          112 PSFFGQIPAELLELSDLESLDLSFNN  137 (177)
Q Consensus       112 n~l~~~~p~~~~~l~~L~~L~Ls~N~  137 (177)
                      |++....+..+..+++|++|+|++|.
T Consensus       122 n~l~~~~~~~~~~l~~L~~L~L~~N~  147 (440)
T 3zyj_A          122 NRLTTIPNGAFVYLSKLKELWLRNNP  147 (440)
T ss_dssp             SCCSSCCTTTSCSCSSCCEEECCSCC
T ss_pred             CcCCeeCHhHhhccccCceeeCCCCc
Confidence            88886555678888888888888884

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.43  E-value=3.6e-13  Score=112.64  Aligned_cols=106  Identities=21%  Similarity=0.174  Sum_probs=90.1

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      +++++|++++|.+++..+.  .+..+++|++|++++|.+++. .|..|..+++|++  +++|++. .+|..  .+++|++
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~--~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~  125 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMP--DISFLSELRVLRLSHNRIRSL-DFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRH  125 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGG--GTTTCTTCCEEECCSCCCCEE-CTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSE
T ss_pred             CCcCEEECCCCCccccChh--hhccCCCccEEECCCCCCCcC-CHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCE
Confidence            5799999999999977667  889999999999999999965 6788999999999  9999997 56665  7899999


Q ss_pred             EeCCCCcCCcccCCC-chhHHhhcCCCCCEEEeecccCCC
Q 041168          131 LDLSFNNFHLKLQGP-SLANLAEKLANLKVLHLGQVNTAS  169 (177)
Q Consensus       131 L~Ls~N~~~l~~~~~-~~p~~~~~l~~L~~L~Ls~N~l~g  169 (177)
                      |++++|+  +   .. .+|..++.+++|++|++++|.+++
T Consensus       126 L~Ls~N~--l---~~l~~p~~~~~l~~L~~L~L~~n~l~~  160 (562)
T 3a79_B          126 LDLSFND--F---DVLPVCKEFGNLTKLTFLGLSAAKFRQ  160 (562)
T ss_dssp             EECCSSC--C---SBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred             EECCCCC--c---cccCchHhhcccCcccEEecCCCcccc
Confidence            9999994  4   22 346788999999999999998875

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.42  E-value=4.5e-13  Score=112.68  Aligned_cols=111  Identities=25%  Similarity=0.251  Sum_probs=49.1

Q ss_pred             EEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCC--CCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           55 VIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSE--IPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        55 l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~--~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      +++|++++|.+.+..+.  .+..+++|++|++++|.+.+..  .+..+..+++|++  +++|++.+..|..+..+++|++
T Consensus       427 L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  504 (606)
T 3t6q_A          427 LKVLNLSHSLLDISSEQ--LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNH  504 (606)
T ss_dssp             CCEEECTTCCCBTTCTT--TTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             CCEEECCCCccCCcCHH--HHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCE
Confidence            34444444444333333  3344444444444444443210  1123444444444  4444444444444555555555


Q ss_pred             EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCc
Q 041168          131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPY  173 (177)
Q Consensus       131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~  173 (177)
                      |++++|  .+   .+..|..+..+++| +|++++|++++..|.
T Consensus       505 L~Ls~N--~l---~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~  541 (606)
T 3t6q_A          505 VDLSHN--RL---TSSSIEALSHLKGI-YLNLASNHISIILPS  541 (606)
T ss_dssp             EECCSS--CC---CGGGGGGGTTCCSC-EEECCSSCCCCCCGG
T ss_pred             EECCCC--cc---CcCChhHhCccccc-EEECcCCcccccCHh
Confidence            555555  23   33444445555555 555555555544333

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.42  E-value=1.3e-13  Score=114.03  Aligned_cols=104  Identities=23%  Similarity=0.328  Sum_probs=46.0

Q ss_pred             cEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEE
Q 041168           54 HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESL  131 (177)
Q Consensus        54 ~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L  131 (177)
                      ++++|++++|.+++..+.  .+..+++|++|++++|.+++. .|..|..+++|++  +++|++. .+|..  .+++|++|
T Consensus        22 ~L~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L   95 (520)
T 2z7x_B           22 KTTILNISQNYISELWTS--DILSLSKLRILIISHNRIQYL-DISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHL   95 (520)
T ss_dssp             TCSEEECCSSCCCCCCHH--HHTTCTTCCEEECCSSCCCEE-EGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEE
T ss_pred             cccEEECCCCcccccChh--hccccccccEEecCCCccCCc-ChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEE
Confidence            444445554444433333  344444444444444444432 3444444444444  4444444 23332  44444444


Q ss_pred             eCCCCcCCcccCCC-chhHHhhcCCCCCEEEeecccCC
Q 041168          132 DLSFNNFHLKLQGP-SLANLAEKLANLKVLHLGQVNTA  168 (177)
Q Consensus       132 ~Ls~N~~~l~~~~~-~~p~~~~~l~~L~~L~Ls~N~l~  168 (177)
                      ++++|.  +   .+ .+|..++.+++|++|++++|.++
T Consensus        96 ~L~~N~--l---~~~~~p~~~~~l~~L~~L~L~~n~l~  128 (520)
T 2z7x_B           96 DLSFNA--F---DALPICKEFGNMSQLKFLGLSTTHLE  128 (520)
T ss_dssp             ECCSSC--C---SSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred             eccCCc--c---ccccchhhhccCCcceEEEecCcccc
Confidence            444442  2   11 23344444444444444444443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.42  E-value=5.3e-13  Score=95.76  Aligned_cols=102  Identities=22%  Similarity=0.171  Sum_probs=48.9

Q ss_pred             cEEEEEccCCccccccCCCcccccCc-CCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           54 HVIRLDLTSSCLYGSINSSSSLFQLV-HLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        54 ~l~~L~l~~n~l~~~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      +++.|++++|.++. ++.   +..+. +|++|++++|.+++  + ..+..+++|++  +++|.+.+..+..+..+++|++
T Consensus        20 ~L~~L~l~~n~l~~-i~~---~~~~~~~L~~L~Ls~N~l~~--~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           20 RDRELDLRGYKIPV-IEN---LGATLDQFDAIDFSDNEIRK--L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             SCEEEECTTSCCCS-CCC---GGGGTTCCSEEECCSSCCCE--E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             CceEEEeeCCCCch-hHH---hhhcCCCCCEEECCCCCCCc--c-cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence            45555555555552 222   23332 55555555555552  3 34455555555  5555554332223355555555


Q ss_pred             EeCCCCcCCcccCCCchhH--HhhcCCCCCEEEeecccCC
Q 041168          131 LDLSFNNFHLKLQGPSLAN--LAEKLANLKVLHLGQVNTA  168 (177)
Q Consensus       131 L~Ls~N~~~l~~~~~~~p~--~~~~l~~L~~L~Ls~N~l~  168 (177)
                      |++++|  .+    +.+|.  .+..+++|++|++++|+++
T Consensus        93 L~L~~N--~i----~~~~~~~~l~~l~~L~~L~l~~N~i~  126 (176)
T 1a9n_A           93 LILTNN--SL----VELGDLDPLASLKSLTYLCILRNPVT  126 (176)
T ss_dssp             EECCSC--CC----CCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             EECCCC--cC----CcchhhHhhhcCCCCCEEEecCCCCC
Confidence            555555  22    22333  4455555555555555554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.41  E-value=1.8e-13  Score=106.67  Aligned_cols=88  Identities=19%  Similarity=0.236  Sum_probs=40.6

Q ss_pred             cCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCC--CChhh--hCCCCCCEEeCCCCcCCcccCCC--chh-H
Q 041168           79 VHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQ--IPAEL--LELSDLESLDLSFNNFHLKLQGP--SLA-N  149 (177)
Q Consensus        79 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~--~p~~~--~~l~~L~~L~Ls~N~~~l~~~~~--~~p-~  149 (177)
                      ++|++|++++|.+.+. .|..+..+++|++  +++|++.+.  ++..+  ..+++|++|++++|  .+   ..  .++ .
T Consensus       149 ~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N--~l---~~~~~~~~~  222 (312)
T 1wwl_A          149 PGLKVLSIAQAHSLNF-SCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA--GM---ETPSGVCSA  222 (312)
T ss_dssp             TTCCEEEEESCSCCCC-CTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS--CC---CCHHHHHHH
T ss_pred             CCCcEEEeeCCCCccc-hHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC--cC---cchHHHHHH
Confidence            3444444444444432 2344444444444  444444322  12222  44455555555555  22   11  122 2


Q ss_pred             HhhcCCCCCEEEeecccCCCCCC
Q 041168          150 LAEKLANLKVLHLGQVNTASTVP  172 (177)
Q Consensus       150 ~~~~l~~L~~L~Ls~N~l~g~~p  172 (177)
                      .+..+++|++|++++|.+++.+|
T Consensus       223 ~~~~l~~L~~L~Ls~N~l~~~~~  245 (312)
T 1wwl_A          223 LAAARVQLQGLDLSHNSLRDAAG  245 (312)
T ss_dssp             HHHTTCCCSEEECTTSCCCSSCC
T ss_pred             HHhcCCCCCEEECCCCcCCcccc
Confidence            23456677777777777766543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.41  E-value=2.2e-13  Score=106.24  Aligned_cols=79  Identities=20%  Similarity=0.169  Sum_probs=35.0

Q ss_pred             cEEEEEccCCccccccCCCccc--ccCcCCcEEEccCCCCCCCCCCccccCC-----ccccc--cccccCCCCCChhhhC
Q 041168           54 HVIRLDLTSSCLYGSINSSSSL--FQLVHLEWLVLSNNHFNFSEIPSEIKNL-----SRLTA--LSNPSFFGQIPAELLE  124 (177)
Q Consensus        54 ~l~~L~l~~n~l~~~~~~~~~l--~~l~~L~~L~Ls~n~l~~~~~p~~~~~l-----~~L~~--ls~n~l~~~~p~~~~~  124 (177)
                      ++++|++++|.+++.+|.  .+  ..+++|++|++++|.+++  .|..+..+     ++|++  +++|++.+..|..++.
T Consensus        96 ~L~~L~L~~n~l~~~~~~--~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~  171 (312)
T 1wwl_A           96 GLQELTLENLEVTGTAPP--PLLEATGPDLNILNLRNVSWAT--RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV  171 (312)
T ss_dssp             CCCEEEEEEEBCBSCCCC--CSSSCCSCCCSEEEEESCBCSS--SSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred             CccEEEccCCcccchhHH--HHHHhcCCCccEEEccCCCCcc--hhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence            444444444444444443  32  444444444444444442  23333333     44444  4444444333344444


Q ss_pred             CCCCCEEeCCCC
Q 041168          125 LSDLESLDLSFN  136 (177)
Q Consensus       125 l~~L~~L~Ls~N  136 (177)
                      +++|++|++++|
T Consensus       172 l~~L~~L~Ls~N  183 (312)
T 1wwl_A          172 FPALSTLDLSDN  183 (312)
T ss_dssp             CSSCCEEECCSC
T ss_pred             CCCCCEEECCCC
Confidence            444444444444

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.41  E-value=9.2e-13  Score=94.25  Aligned_cols=95  Identities=19%  Similarity=0.190  Sum_probs=81.6

Q ss_pred             CccceEEEcCC---------CCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--c
Q 041168           41 CLWDGIKCNED---------NGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--L  109 (177)
Q Consensus        41 C~w~gv~c~~~---------~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--l  109 (177)
                      |.|+.+.|...         ..+++.|++++|.+++..+.  .+..+++|++|+|++|++++. .+..|..+++|++  |
T Consensus         9 C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~--~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L   85 (170)
T 3g39_A            9 CSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPG--VFDRLTQLTRLDLDNNQLTVL-PAGVFDKLTQLTQLSL   85 (170)
T ss_dssp             EETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTT--TTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEEC
T ss_pred             cCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChh--hhcCcccCCEEECCCCCcCcc-ChhhccCCCCCCEEEC
Confidence            67888888532         25789999999999987777  899999999999999999964 4556789999999  9


Q ss_pred             ccccCCCCCChhhhCCCCCCEEeCCCCcC
Q 041168          110 SNPSFFGQIPAELLELSDLESLDLSFNNF  138 (177)
Q Consensus       110 s~n~l~~~~p~~~~~l~~L~~L~Ls~N~~  138 (177)
                      ++|++.+..+..+..+++|++|+|++|++
T Consensus        86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  114 (170)
T 3g39_A           86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPW  114 (170)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CCCccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence            99999976666799999999999999954

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.40  E-value=1.8e-13  Score=95.40  Aligned_cols=103  Identities=23%  Similarity=0.131  Sum_probs=86.7

Q ss_pred             CCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCC-CChhhhCCCCC
Q 041168           52 NGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQ-IPAELLELSDL  128 (177)
Q Consensus        52 ~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~-~p~~~~~l~~L  128 (177)
                      .++++.|++++|.+++.  .  .+..+++|++|++++|.+++. +|..+..+++|++  +++|.+.+. .+..+..+++|
T Consensus        41 l~~L~~L~l~~n~l~~~--~--~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L  115 (149)
T 2je0_A           41 FEELEFLSTINVGLTSI--A--NLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENL  115 (149)
T ss_dssp             CTTCCEEECTTSCCCCC--T--TCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTC
T ss_pred             cCCCcEEECcCCCCCCc--h--hhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCC
Confidence            36899999999999865  5  789999999999999999976 7877888999999  999999853 33788999999


Q ss_pred             CEEeCCCCcCCcccCCCchh---HHhhcCCCCCEEEeec
Q 041168          129 ESLDLSFNNFHLKLQGPSLA---NLAEKLANLKVLHLGQ  164 (177)
Q Consensus       129 ~~L~Ls~N~~~l~~~~~~~p---~~~~~l~~L~~L~Ls~  164 (177)
                      ++|++++|.  +   ....+   ..+..+++|++|++++
T Consensus       116 ~~L~l~~N~--l---~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          116 KSLDLFNCE--V---TNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CEEECTTCG--G---GGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CEEeCcCCc--c---cchHHHHHHHHHHCCCcccccCCC
Confidence            999999994  4   33333   4788999999999863

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.40  E-value=4.8e-13  Score=110.65  Aligned_cols=107  Identities=23%  Similarity=0.169  Sum_probs=92.9

Q ss_pred             EEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeC
Q 041168           56 IRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDL  133 (177)
Q Consensus        56 ~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~L  133 (177)
                      ++|++++|.++ .+|.  .+.  ++|++|++++|.+++. .|..|..+++|++  +++|++.+..|..|..+++|++|++
T Consensus         3 ~~l~ls~n~l~-~ip~--~~~--~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L   76 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVPK--DLS--QKTTILNISQNYISEL-WTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDL   76 (520)
T ss_dssp             CEEECTTSCCS-SCCC--SCC--TTCSEEECCSSCCCCC-CHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEEC
T ss_pred             ceEecCCCCcc-cccc--ccc--ccccEEECCCCccccc-ChhhccccccccEEecCCCccCCcChHHhhcccCCCEEec
Confidence            47999999999 5776  565  8999999999999965 5678999999999  9999999877889999999999999


Q ss_pred             CCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCC-CCCcccc
Q 041168          134 SFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAS-TVPYALA  176 (177)
Q Consensus       134 s~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g-~~p~~l~  176 (177)
                      ++|  .+    ..+|..  .+++|++|++++|.+++ .+|..++
T Consensus        77 s~N--~l----~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~  112 (520)
T 2z7x_B           77 SHN--KL----VKISCH--PTVNLKHLDLSFNAFDALPICKEFG  112 (520)
T ss_dssp             CSS--CC----CEEECC--CCCCCSEEECCSSCCSSCCCCGGGG
T ss_pred             CCC--ce----eecCcc--ccCCccEEeccCCccccccchhhhc
Confidence            999  55    357766  89999999999999997 5777765

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.37  E-value=1.5e-12  Score=101.98  Aligned_cols=83  Identities=23%  Similarity=0.192  Sum_probs=47.8

Q ss_pred             CCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhhcCCCC
Q 041168           80 HLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANL  157 (177)
Q Consensus        80 ~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L  157 (177)
                      +|++|++++|.+++. .+..+..+++|++  +++|.+.+..+..+..+++|++|++++|  .+    ..+|..+..+++|
T Consensus       193 ~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N--~l----~~lp~~l~~l~~L  265 (330)
T 1xku_A          193 SLTELHLDGNKITKV-DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN--KL----VKVPGGLADHKYI  265 (330)
T ss_dssp             TCSEEECTTSCCCEE-CTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS--CC----SSCCTTTTTCSSC
T ss_pred             cCCEEECCCCcCCcc-CHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC--cC----ccCChhhccCCCc
Confidence            444444444444433 3445555666666  6666665544455666666666666666  33    2455566666666


Q ss_pred             CEEEeecccCCC
Q 041168          158 KVLHLGQVNTAS  169 (177)
Q Consensus       158 ~~L~Ls~N~l~g  169 (177)
                      ++|++++|++++
T Consensus       266 ~~L~l~~N~i~~  277 (330)
T 1xku_A          266 QVVYLHNNNISA  277 (330)
T ss_dssp             CEEECCSSCCCC
T ss_pred             CEEECCCCcCCc
Confidence            667776666664

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.37  E-value=3.6e-13  Score=104.86  Aligned_cols=113  Identities=19%  Similarity=0.067  Sum_probs=58.1

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCC---CCCCccccCCccccc--cccccCCCCCCh----hhh
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNF---SEIPSEIKNLSRLTA--LSNPSFFGQIPA----ELL  123 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~---~~~p~~~~~l~~L~~--ls~n~l~~~~p~----~~~  123 (177)
                      +++++|++++|.+.+..+.  .+..+++|++|++++|.+.+   ...+..+..+++|++  +++|++. .++.    .+.
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~  221 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCE--QVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAA  221 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTT--SCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHH
T ss_pred             cCCCEEEeeCCCcchhhHH--HhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHh
Confidence            4566666666666655555  56666666666666666542   001122344555555  5555554 2222    134


Q ss_pred             CCCCCCEEeCCCCcCCcccCCCchhHHhhcC---CCCCEEEeecccCCCCCCcc
Q 041168          124 ELSDLESLDLSFNNFHLKLQGPSLANLAEKL---ANLKVLHLGQVNTASTVPYA  174 (177)
Q Consensus       124 ~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l---~~L~~L~Ls~N~l~g~~p~~  174 (177)
                      .+++|++|+|++|  .+   ....|..+..+   ++|++|+|++|+|+ .+|..
T Consensus       222 ~l~~L~~L~Ls~N--~l---~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~  269 (310)
T 4glp_A          222 AGVQPHSLDLSHN--SL---RATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKG  269 (310)
T ss_dssp             HTCCCSSEECTTS--CC---CCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSC
T ss_pred             cCCCCCEEECCCC--CC---CccchhhHHhccCcCcCCEEECCCCCCC-chhhh
Confidence            5556666666666  33   33334334333   45555555555555 34443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.37  E-value=4.1e-13  Score=96.38  Aligned_cols=103  Identities=21%  Similarity=0.245  Sum_probs=87.4

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCc-cccCCccccc--cccccCCCCCCh--hhhCCCC
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPS-EIKNLSRLTA--LSNPSFFGQIPA--ELLELSD  127 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~-~~~~l~~L~~--ls~n~l~~~~p~--~~~~l~~  127 (177)
                      ++++.|++++|.+++.  .  .+..+++|++|++++|.++.  +|+ .+..+++|++  +++|.+. .+|.  .+..+++
T Consensus        42 ~~L~~L~Ls~N~l~~~--~--~l~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~  114 (176)
T 1a9n_A           42 DQFDAIDFSDNEIRKL--D--GFPLLRRLKTLLVNNNRICR--IGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKS  114 (176)
T ss_dssp             TCCSEEECCSSCCCEE--C--CCCCCSSCCEEECCSSCCCE--ECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTT
T ss_pred             CCCCEEECCCCCCCcc--c--ccccCCCCCEEECCCCcccc--cCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCC
Confidence            4899999999999964  4  78999999999999999995  554 4588999999  9999996 6676  7899999


Q ss_pred             CCEEeCCCCcCCcccCCCchhH----HhhcCCCCCEEEeecccCC
Q 041168          128 LESLDLSFNNFHLKLQGPSLAN----LAEKLANLKVLHLGQVNTA  168 (177)
Q Consensus       128 L~~L~Ls~N~~~l~~~~~~~p~----~~~~l~~L~~L~Ls~N~l~  168 (177)
                      |++|++++|+  +    ..+|.    .+..+++|+.|+++.|.+.
T Consensus       115 L~~L~l~~N~--i----~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A          115 LTYLCILRNP--V----TNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CCEEECCSSG--G----GGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCEEEecCCC--C----CCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            9999999994  4    23555    3889999999999999763

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.37  E-value=1.3e-12  Score=106.26  Aligned_cols=81  Identities=21%  Similarity=0.159  Sum_probs=62.4

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      .+|+.|++++|.+.+..+.  .|.++++|++|+|++|.++.. .+..|..+++|++  +++|.+....+..+..+++|++
T Consensus        88 ~~L~~L~Ls~n~i~~i~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~  164 (440)
T 3zyj_A           88 RHLEILQLSRNHIRTIEIG--AFNGLANLNTLELFDNRLTTI-PNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRR  164 (440)
T ss_dssp             SSCCEEECCSSCCCEECGG--GGTTCSSCCEEECCSSCCSSC-CTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred             CCCCEEECCCCcCCccChh--hccCCccCCEEECCCCcCCee-CHhHhhccccCceeeCCCCcccccCHHHhhhCcccCE
Confidence            6789999999998876666  788889999999999998854 4456888888888  8888887555556666666666


Q ss_pred             EeCCCC
Q 041168          131 LDLSFN  136 (177)
Q Consensus       131 L~Ls~N  136 (177)
                      |++++|
T Consensus       165 L~l~~~  170 (440)
T 3zyj_A          165 LDLGEL  170 (440)
T ss_dssp             EECCCC
T ss_pred             eCCCCC
Confidence            666664

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.36  E-value=1.3e-12  Score=102.49  Aligned_cols=87  Identities=22%  Similarity=0.131  Sum_probs=67.1

Q ss_pred             cCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhhcCCC
Q 041168           79 VHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLAN  156 (177)
Q Consensus        79 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~  156 (177)
                      ++|++|++++|.+++. .+..+..+++|++  +++|.+.+..+..+..+++|++|++++|  .+    ..+|..+..+++
T Consensus       193 ~~L~~L~l~~n~i~~~-~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N--~l----~~lp~~l~~l~~  265 (332)
T 2ft3_A          193 ETLNELHLDHNKIQAI-ELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN--KL----SRVPAGLPDLKL  265 (332)
T ss_dssp             SSCSCCBCCSSCCCCC-CTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS--CC----CBCCTTGGGCTT
T ss_pred             CCCCEEECCCCcCCcc-CHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC--cC----eecChhhhcCcc
Confidence            4677777777777754 5567788888888  8888888766667888888888888888  44    357777888888


Q ss_pred             CCEEEeecccCCCCCC
Q 041168          157 LKVLHLGQVNTASTVP  172 (177)
Q Consensus       157 L~~L~Ls~N~l~g~~p  172 (177)
                      |++|++++|++++..+
T Consensus       266 L~~L~l~~N~l~~~~~  281 (332)
T 2ft3_A          266 LQVVYLHTNNITKVGV  281 (332)
T ss_dssp             CCEEECCSSCCCBCCT
T ss_pred             CCEEECCCCCCCccCh
Confidence            8888888888875433

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.36  E-value=1.6e-12  Score=106.10  Aligned_cols=81  Identities=21%  Similarity=0.157  Sum_probs=63.2

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      .+++.|++++|.+++..+.  .+..+++|++|+|++|.++.. .+..|..+++|++  |++|.+....+..+..+++|++
T Consensus        99 ~~L~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  175 (452)
T 3zyi_A           99 HHLEVLQLGRNSIRQIEVG--AFNGLASLNTLELFDNWLTVI-PSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMR  175 (452)
T ss_dssp             TTCCEEECCSSCCCEECTT--TTTTCTTCCEEECCSSCCSBC-CTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred             CCCCEEECCCCccCCcChh--hccCcccCCEEECCCCcCCcc-ChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccE
Confidence            6789999999999877767  888899999999999999854 4456888889998  8888887554545666666666


Q ss_pred             EeCCCC
Q 041168          131 LDLSFN  136 (177)
Q Consensus       131 L~Ls~N  136 (177)
                      |++++|
T Consensus       176 L~l~~~  181 (452)
T 3zyi_A          176 LDLGEL  181 (452)
T ss_dssp             EECCCC
T ss_pred             EeCCCC
Confidence            666653

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.35  E-value=1.5e-12  Score=101.69  Aligned_cols=104  Identities=15%  Similarity=0.094  Sum_probs=47.5

Q ss_pred             cEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccc-cCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           54 HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEI-KNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        54 ~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~-~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      +++.|++++|.+++..+.  .+..+++|++|++++|.+++. .+..+ ..+++|++  +++|.+.+. + ....+++|++
T Consensus       121 ~L~~L~l~~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~  195 (317)
T 3o53_A          121 GKKNIYLANNKITMLRDL--DEGCRSRVQYLDLKLNEIDTV-NFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKT  195 (317)
T ss_dssp             SCEEEECCSSCCCSGGGB--CTGGGSSEEEEECTTSCCCEE-EGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCE
T ss_pred             CCCEEECCCCCCCCccch--hhhccCCCCEEECCCCCCCcc-cHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCE
Confidence            455555555555544443  444555555555555555532 23333 23444544  455544422 1 1123444555


Q ss_pred             EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCC
Q 041168          131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTA  168 (177)
Q Consensus       131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~  168 (177)
                      |++++|  .+    ..+|..+..+++|++|++++|.++
T Consensus       196 L~Ls~N--~l----~~l~~~~~~l~~L~~L~L~~N~l~  227 (317)
T 3o53_A          196 LDLSSN--KL----AFMGPEFQSAAGVTWISLRNNKLV  227 (317)
T ss_dssp             EECCSS--CC----CEECGGGGGGTTCSEEECTTSCCC
T ss_pred             EECCCC--cC----CcchhhhcccCcccEEECcCCccc
Confidence            555554  22    123333444455555555555544

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.34  E-value=3.1e-12  Score=107.03  Aligned_cols=108  Identities=25%  Similarity=0.180  Sum_probs=92.5

Q ss_pred             EEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEe
Q 041168           55 VIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLD  132 (177)
Q Consensus        55 l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~  132 (177)
                      .+++++++|.+++ +|.  .+.  ++|++|++++|.+++. .+..|..+++|++  +++|++.+..|..|..+++|++|+
T Consensus        33 ~~~l~ls~~~L~~-ip~--~~~--~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  106 (562)
T 3a79_B           33 ESMVDYSNRNLTH-VPK--DLP--PRTKALSLSQNSISEL-RMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD  106 (562)
T ss_dssp             CCEEECTTSCCCS-CCT--TSC--TTCCEEECCSSCCCCC-CGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred             CcEEEcCCCCCcc-CCC--CCC--CCcCEEECCCCCcccc-ChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence            3799999999995 776  554  8999999999999965 5678999999999  999999988888999999999999


Q ss_pred             CCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCC-CCCcccc
Q 041168          133 LSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAS-TVPYALA  176 (177)
Q Consensus       133 Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g-~~p~~l~  176 (177)
                      +++|  .+    ..+|..  .+++|++|++++|++++ .+|..++
T Consensus       107 Ls~N--~l----~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~  143 (562)
T 3a79_B          107 VSHN--RL----QNISCC--PMASLRHLDLSFNDFDVLPVCKEFG  143 (562)
T ss_dssp             CTTS--CC----CEECSC--CCTTCSEEECCSSCCSBCCCCGGGG
T ss_pred             CCCC--cC----CccCcc--ccccCCEEECCCCCccccCchHhhc
Confidence            9999  45    356765  89999999999999987 3556664

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.33  E-value=9.4e-13  Score=102.82  Aligned_cols=111  Identities=19%  Similarity=0.107  Sum_probs=91.8

Q ss_pred             CcEEEEEccCCccccccCCCccc-ccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCC
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSL-FQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLE  129 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~  129 (177)
                      .+++.|++++|.+.+..+.  .+ ..+++|++|++++|.++.  ++ ....+++|++  +++|++. .+|..+..+++|+
T Consensus       144 ~~L~~L~Ls~N~l~~~~~~--~~~~~l~~L~~L~L~~N~l~~--~~-~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~  217 (317)
T 3o53_A          144 SRVQYLDLKLNEIDTVNFA--ELAASSDTLEHLNLQYNFIYD--VK-GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVT  217 (317)
T ss_dssp             SSEEEEECTTSCCCEEEGG--GGGGGTTTCCEEECTTSCCCE--EE-CCCCCTTCCEEECCSSCCC-EECGGGGGGTTCS
T ss_pred             CCCCEEECCCCCCCcccHH--HHhhccCcCCEEECCCCcCcc--cc-cccccccCCEEECCCCcCC-cchhhhcccCccc
Confidence            6899999999999976665  55 478999999999999984  43 3445889999  9999998 4566799999999


Q ss_pred             EEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCC-CCCCccc
Q 041168          130 SLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTA-STVPYAL  175 (177)
Q Consensus       130 ~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~-g~~p~~l  175 (177)
                      +|++++|  .+    ..+|..+..+++|++|++++|++. +.+|..+
T Consensus       218 ~L~L~~N--~l----~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~  258 (317)
T 3o53_A          218 WISLRNN--KL----VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFF  258 (317)
T ss_dssp             EEECTTS--CC----CEECTTCCCCTTCCEEECTTCCCBHHHHHHHH
T ss_pred             EEECcCC--cc----cchhhHhhcCCCCCEEEccCCCccCcCHHHHH
Confidence            9999999  55    357888899999999999999998 4444443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.33  E-value=9.6e-13  Score=98.63  Aligned_cols=110  Identities=18%  Similarity=0.231  Sum_probs=67.1

Q ss_pred             CcEEEEEccCCc-cccccCCCcccccCcCCcEEEccC-CCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCC
Q 041168           53 GHVIRLDLTSSC-LYGSINSSSSLFQLVHLEWLVLSN-NHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDL  128 (177)
Q Consensus        53 ~~l~~L~l~~n~-l~~~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L  128 (177)
                      ++++.|++++|. ++...+.  .+..+++|++|++++ |.++.. .+..|..+++|++  +++|.+.+ +|. +..+++|
T Consensus        55 ~~L~~L~l~~n~~l~~i~~~--~f~~l~~L~~L~l~~~n~l~~i-~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L  129 (239)
T 2xwt_C           55 PNISRIYVSIDVTLQQLESH--SFYNLSKVTHIEIRNTRNLTYI-DPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYST  129 (239)
T ss_dssp             TTCCEEEEECCSSCCEECTT--TEESCTTCCEEEEEEETTCCEE-CTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBC
T ss_pred             CCCcEEeCCCCCCcceeCHh--HcCCCcCCcEEECCCCCCeeEc-CHHHhCCCCCCCEEeCCCCCCcc-ccc-ccccccc
Confidence            567777777775 6654444  566777777777776 777643 3355667777777  77776664 444 5566666


Q ss_pred             C---EEeCCCC-cCCcccCCCchhHHhhcCCCCC-EEEeecccCCCCCCc
Q 041168          129 E---SLDLSFN-NFHLKLQGPSLANLAEKLANLK-VLHLGQVNTASTVPY  173 (177)
Q Consensus       129 ~---~L~Ls~N-~~~l~~~~~~~p~~~~~l~~L~-~L~Ls~N~l~g~~p~  173 (177)
                      +   +|++++| .+     ....+..|..+++|+ +|++++|.++ .+|.
T Consensus       130 ~~L~~L~l~~N~~l-----~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~  173 (239)
T 2xwt_C          130 DIFFILEITDNPYM-----TSIPVNAFQGLCNETLTLKLYNNGFT-SVQG  173 (239)
T ss_dssp             CSEEEEEEESCTTC-----CEECTTTTTTTBSSEEEEECCSCCCC-EECT
T ss_pred             ccccEEECCCCcch-----hhcCcccccchhcceeEEEcCCCCCc-ccCH
Confidence            6   6666666 32     122223355666666 6666666665 3443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.30  E-value=2e-12  Score=106.85  Aligned_cols=111  Identities=19%  Similarity=0.099  Sum_probs=93.1

Q ss_pred             CcEEEEEccCCccccccCCCcccc-cCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCC
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLF-QLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLE  129 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~  129 (177)
                      ++++.|++++|.+++..+.  .+. .++.|+.|+|++|.+++  ++ .+..+++|++  |++|.+.+ +|+.+..+++|+
T Consensus       144 ~~L~~L~Ls~N~l~~~~~~--~l~~~l~~L~~L~Ls~N~l~~--~~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~  217 (487)
T 3oja_A          144 SRVQYLDLKLNEIDTVNFA--ELAASSDTLEHLNLQYNFIYD--VK-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVT  217 (487)
T ss_dssp             SSEEEEECTTSCCCEEEGG--GGGGGTTTCCEEECTTSCCCE--EE-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCS
T ss_pred             CCCCEEECCCCCCCCcChH--HHhhhCCcccEEecCCCcccc--cc-ccccCCCCCEEECCCCCCCC-CCHhHcCCCCcc
Confidence            6899999999999987777  675 79999999999999985  43 3446899999  99999985 556699999999


Q ss_pred             EEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCC-CCCCccc
Q 041168          130 SLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTA-STVPYAL  175 (177)
Q Consensus       130 ~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~-g~~p~~l  175 (177)
                      .|+|++|  .+    ..+|..+..+++|+.|++++|.+. +.+|..+
T Consensus       218 ~L~Ls~N--~l----~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~  258 (487)
T 3oja_A          218 WISLRNN--KL----VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFF  258 (487)
T ss_dssp             EEECTTS--CC----CEECTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred             EEEecCC--cC----cccchhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence            9999999  55    347888889999999999999998 4454433

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.29  E-value=3e-12  Score=99.59  Aligned_cols=120  Identities=19%  Similarity=0.078  Sum_probs=81.4

Q ss_pred             cEEEEEccCCccccccCCCccc--ccCcCCcEEEccCCCCCCCCCC----ccccCCccccc--cccccCCCCCChhhhCC
Q 041168           54 HVIRLDLTSSCLYGSINSSSSL--FQLVHLEWLVLSNNHFNFSEIP----SEIKNLSRLTA--LSNPSFFGQIPAELLEL  125 (177)
Q Consensus        54 ~l~~L~l~~n~l~~~~~~~~~l--~~l~~L~~L~Ls~n~l~~~~~p----~~~~~l~~L~~--ls~n~l~~~~p~~~~~l  125 (177)
                      ++++|++++|.+.+..+.  .+  ..+++|++|++++|.+++. .+    ..+..+++|++  +++|.+.+..+..+..+
T Consensus        92 ~L~~L~l~~n~l~~~~~~--~~~~~~~~~L~~L~Ls~n~i~~~-~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l  168 (310)
T 4glp_A           92 RLKELTLEDLKITGTMPP--LPLEATGLALSSLRLRNVSWATG-RSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF  168 (310)
T ss_dssp             CCCEEEEESCCCBSCCCC--CSSSCCCBCCSSCEEESCCCSST-TSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred             ceeEEEeeCCEeccchhh--hhhhccCCCCCEEEeecccccch-hhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence            488899999988877776  66  6777888888888877754 33    23345677777  77777776666667777


Q ss_pred             CCCCEEeCCCCcCC----c-------ccC-----------CCchhH----HhhcCCCCCEEEeecccCCCCCCcccc
Q 041168          126 SDLESLDLSFNNFH----L-------KLQ-----------GPSLAN----LAEKLANLKVLHLGQVNTASTVPYALA  176 (177)
Q Consensus       126 ~~L~~L~Ls~N~~~----l-------~~~-----------~~~~p~----~~~~l~~L~~L~Ls~N~l~g~~p~~l~  176 (177)
                      ++|++|+|++|++.    +       .++           ...++.    .+..+++|++|+|++|.+++.+|..++
T Consensus       169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~  245 (310)
T 4glp_A          169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAP  245 (310)
T ss_dssp             TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCS
T ss_pred             CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHH
Confidence            77777777777421    0       000           112233    246778999999999999887676553

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.28  E-value=1.6e-11  Score=88.20  Aligned_cols=83  Identities=19%  Similarity=0.166  Sum_probs=72.5

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      .+++.|++++|.+++..+.  .+..+++|++|+|++|++++. .+..|..+++|++  |++|++.+..+..+..+++|++
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~i-~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~  109 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPG--VFDHLVNLQQLYFNSNKLTAI-PTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTH  109 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSE
T ss_pred             CCCcEEEeCCCCccccCHH--HhcCCcCCCEEECCCCCCCcc-ChhHhCCcchhhEEECCCCccceeCHHHhccccCCCE
Confidence            5789999999999987777  899999999999999999964 3445789999999  9999999655556999999999


Q ss_pred             EeCCCCcC
Q 041168          131 LDLSFNNF  138 (177)
Q Consensus       131 L~Ls~N~~  138 (177)
                      |+|++|++
T Consensus       110 L~L~~N~~  117 (174)
T 2r9u_A          110 IYLYNNPW  117 (174)
T ss_dssp             EECCSSCB
T ss_pred             EEeCCCCc
Confidence            99999954

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.27  E-value=1.2e-11  Score=97.33  Aligned_cols=106  Identities=21%  Similarity=0.240  Sum_probs=70.2

Q ss_pred             CccceEEEcCCCCcEEEEEccCC-ccccccCCCcccccCcCCcEEEccC-CCCCCCCCCccccCCccccc--cccccCCC
Q 041168           41 CLWDGIKCNEDNGHVIRLDLTSS-CLYGSINSSSSLFQLVHLEWLVLSN-NHFNFSEIPSEIKNLSRLTA--LSNPSFFG  116 (177)
Q Consensus        41 C~w~gv~c~~~~~~l~~L~l~~n-~l~~~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~p~~~~~l~~L~~--ls~n~l~~  116 (177)
                      |.|..|.|.            ++ .++. +|.   +..+++|+.|+|++ |.+++. .+..|..+++|++  |++|+|.+
T Consensus         8 C~~~~v~~~------------~~n~l~~-ip~---l~~~~~L~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~   70 (347)
T 2ifg_A            8 HGSSGLRCT------------RDGALDS-LHH---LPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSGLRF   70 (347)
T ss_dssp             SSSSCEECC------------SSCCCTT-TTT---SCSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSCCCE
T ss_pred             ccCCEEEcC------------CCCCCCc-cCC---CCCCCCeeEEEccCCCCCCCc-ChhHhccccCCCEEECCCCccce
Confidence            777666664            33 4552 443   56667778888875 777753 3456777778877  77888777


Q ss_pred             CCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCC
Q 041168          117 QIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAS  169 (177)
Q Consensus       117 ~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g  169 (177)
                      ..|..|..+++|++|+|++|  .+   ....+..+..++ |+.|+|.+|++..
T Consensus        71 ~~~~~~~~l~~L~~L~l~~N--~l---~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           71 VAPDAFHFTPRLSRLNLSFN--AL---ESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             ECTTGGGSCSCCCEEECCSS--CC---SCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             eCHHHhcCCcCCCEEeCCCC--cc---ceeCHHHcccCC-ceEEEeeCCCccC
Confidence            77777777888888888888  44   333333344444 7888888887764

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.27  E-value=3.2e-11  Score=94.73  Aligned_cols=106  Identities=27%  Similarity=0.374  Sum_probs=79.8

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      .+++.|++++|.+++..    .+..+++|++|++++|.++.  + +.+..+++|++  +++|.+.+ + +.+..+++|++
T Consensus       221 ~~L~~L~l~~n~l~~~~----~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~  291 (347)
T 4fmz_A          221 TRLNSLKIGNNKITDLS----PLANLSQLTWLEIGTNQISD--I-NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNS  291 (347)
T ss_dssp             TTCCEEECCSSCCCCCG----GGTTCTTCCEEECCSSCCCC--C-GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSE
T ss_pred             CcCCEEEccCCccCCCc----chhcCCCCCEEECCCCccCC--C-hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCE
Confidence            56777788777776432    35677888888888888773  3 45777888888  88888874 3 45778888888


Q ss_pred             EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCC
Q 041168          131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVP  172 (177)
Q Consensus       131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p  172 (177)
                      |++++|  .+   ....+..+..+++|++|++++|++++..|
T Consensus       292 L~L~~n--~l---~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  328 (347)
T 4fmz_A          292 LFLNNN--QL---GNEDMEVIGGLTNLTTLFLSQNHITDIRP  328 (347)
T ss_dssp             EECCSS--CC---CGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred             EECcCC--cC---CCcChhHhhccccCCEEEccCCccccccC
Confidence            888888  45   55667778888999999999999887554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.26  E-value=3.5e-11  Score=92.97  Aligned_cols=101  Identities=24%  Similarity=0.274  Sum_probs=56.6

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      .+++.|++++|.+++ ++   .+..+++|++|++++|.++.  + +.+..+++|++  +++|++.+.  ..+..+++|++
T Consensus        90 ~~L~~L~l~~n~l~~-~~---~l~~l~~L~~L~L~~n~i~~--~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~  160 (291)
T 1h6t_A           90 KNLGWLFLDENKVKD-LS---SLKDLKKLKSLSLEHNGISD--I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDT  160 (291)
T ss_dssp             TTCCEEECCSSCCCC-GG---GGTTCTTCCEEECTTSCCCC--C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSE
T ss_pred             CCCCEEECCCCcCCC-Ch---hhccCCCCCEEECCCCcCCC--C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCE
Confidence            345555555555543 21   35555566666666666552  2 34555666666  666666532  45566666666


Q ss_pred             EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCC
Q 041168          131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAS  169 (177)
Q Consensus       131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g  169 (177)
                      |++++|  .+   .. ++. +..+++|++|++++|.+++
T Consensus       161 L~L~~N--~l---~~-~~~-l~~l~~L~~L~L~~N~i~~  192 (291)
T 1h6t_A          161 LSLEDN--QI---SD-IVP-LAGLTKLQNLYLSKNHISD  192 (291)
T ss_dssp             EECCSS--CC---CC-CGG-GTTCTTCCEEECCSSCCCB
T ss_pred             EEccCC--cc---cc-chh-hcCCCccCEEECCCCcCCC
Confidence            666666  33   22 222 6666777777777776664

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.26  E-value=5.5e-12  Score=99.82  Aligned_cols=95  Identities=20%  Similarity=0.207  Sum_probs=78.4

Q ss_pred             CccceEEEcCC---------CCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCC-ccccCCccccc--
Q 041168           41 CLWDGIKCNED---------NGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIP-SEIKNLSRLTA--  108 (177)
Q Consensus        41 C~w~gv~c~~~---------~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p-~~~~~l~~L~~--  108 (177)
                      |.+..|.|...         ..++++|+|++|.|+...+.  .|.++++|++|+|++|.+.+. +| ..|..+++++.  
T Consensus         9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~--~f~~l~~L~~L~Ls~N~i~~~-i~~~~f~~L~~l~~~l   85 (350)
T 4ay9_X            9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKG--AFSGFGDLEKIEISQNDVLEV-IEADVFSNLPKLHEIR   85 (350)
T ss_dssp             EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTT--SSTTCTTCCEEEEECCTTCCE-ECTTSBCSCTTCCEEE
T ss_pred             eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHH--HHcCCCCCCEEECcCCCCCCc-cChhHhhcchhhhhhh
Confidence            78899999532         24789999999999965445  789999999999999998755 55 46788888876  


Q ss_pred             -cccccCCCCCChhhhCCCCCCEEeCCCCcC
Q 041168          109 -LSNPSFFGQIPAELLELSDLESLDLSFNNF  138 (177)
Q Consensus       109 -ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~  138 (177)
                       +..|++....|..|..+++|++|++++|.+
T Consensus        86 ~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l  116 (350)
T 4ay9_X           86 IEKANNLLYINPEAFQNLPNLQYLLISNTGI  116 (350)
T ss_dssp             EEEETTCCEECTTSBCCCTTCCEEEEEEECC
T ss_pred             cccCCcccccCchhhhhcccccccccccccc
Confidence             667899877778899999999999999954

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.25  E-value=1.5e-11  Score=96.59  Aligned_cols=103  Identities=20%  Similarity=0.237  Sum_probs=87.3

Q ss_pred             CCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCC
Q 041168           52 NGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLE  129 (177)
Q Consensus        52 ~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~  129 (177)
                      .++++.|++++|.+++.  +  .+..+++|++|++++|.++.  + +.+..+++|+.  +++|.+.+..+..+..+++|+
T Consensus       242 l~~L~~L~l~~n~l~~~--~--~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  314 (347)
T 4fmz_A          242 LSQLTWLEIGTNQISDI--N--AVKDLTKLKMLNVGSNQISD--I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT  314 (347)
T ss_dssp             CTTCCEEECCSSCCCCC--G--GGTTCTTCCEEECCSSCCCC--C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred             CCCCCEEECCCCccCCC--h--hHhcCCCcCEEEccCCccCC--C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCC
Confidence            46899999999999863  3  68889999999999999984  4 46888999999  999999988888899999999


Q ss_pred             EEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCC
Q 041168          130 SLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTA  168 (177)
Q Consensus       130 ~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~  168 (177)
                      +|++++|  .+   ....|  +..+++|++|++++|.|+
T Consensus       315 ~L~L~~n--~l---~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          315 TLFLSQN--HI---TDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             EEECCSS--SC---CCCGG--GGGCTTCSEESSSCC---
T ss_pred             EEEccCC--cc---ccccC--hhhhhccceeehhhhccc
Confidence            9999999  45   44444  889999999999999885

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.25  E-value=4.4e-11  Score=92.41  Aligned_cols=99  Identities=29%  Similarity=0.364  Sum_probs=43.0

Q ss_pred             cEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEE
Q 041168           54 HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESL  131 (177)
Q Consensus        54 ~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L  131 (177)
                      +++.|++++|.+++.  +  .+..+++|+.|++++|.++.  + ..+..+++|++  +++|.+.+.. . +..+++|++|
T Consensus       113 ~L~~L~L~~n~i~~~--~--~l~~l~~L~~L~l~~n~l~~--~-~~l~~l~~L~~L~L~~N~l~~~~-~-l~~l~~L~~L  183 (291)
T 1h6t_A          113 KLKSLSLEHNGISDI--N--GLVHLPQLESLYLGNNKITD--I-TVLSRLTKLDTLSLEDNQISDIV-P-LAGLTKLQNL  183 (291)
T ss_dssp             TCCEEECTTSCCCCC--G--GGGGCTTCCEEECCSSCCCC--C-GGGGGCTTCSEEECCSSCCCCCG-G-GTTCTTCCEE
T ss_pred             CCCEEECCCCcCCCC--h--hhcCCCCCCEEEccCCcCCc--c-hhhccCCCCCEEEccCCccccch-h-hcCCCccCEE
Confidence            444444444444431  1  34444444455554444442  2 33444444444  4444444222 1 4444444555


Q ss_pred             eCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCC
Q 041168          132 DLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTA  168 (177)
Q Consensus       132 ~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~  168 (177)
                      ++++|  .+    ..++. +..+++|+.|++++|+++
T Consensus       184 ~L~~N--~i----~~l~~-l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          184 YLSKN--HI----SDLRA-LAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             ECCSS--CC----CBCGG-GTTCTTCSEEEEEEEEEE
T ss_pred             ECCCC--cC----CCChh-hccCCCCCEEECcCCccc
Confidence            55444  22    11222 444444445555444443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.24  E-value=4.2e-11  Score=93.20  Aligned_cols=75  Identities=20%  Similarity=0.262  Sum_probs=34.3

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      .+++.|++++|.+++.  +  .+..+++|++|++++|.++.  ++ .+..+++|++  +++|.+.+. +. +..+++|++
T Consensus        85 ~~L~~L~L~~n~l~~~--~--~~~~l~~L~~L~l~~n~l~~--~~-~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~  155 (308)
T 1h6u_A           85 TKITELELSGNPLKNV--S--AIAGLQSIKTLDLTSTQITD--VT-PLAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQY  155 (308)
T ss_dssp             CSCCEEECCSCCCSCC--G--GGTTCTTCCEEECTTSCCCC--CG-GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCE
T ss_pred             CCCCEEEccCCcCCCc--h--hhcCCCCCCEEECCCCCCCC--ch-hhcCCCCCCEEECCCCccCcC-cc-ccCCCCccE
Confidence            3455555555555432  1  34445555555555555542  22 2444444444  444444422 21 444444444


Q ss_pred             EeCCCC
Q 041168          131 LDLSFN  136 (177)
Q Consensus       131 L~Ls~N  136 (177)
                      |++++|
T Consensus       156 L~l~~n  161 (308)
T 1h6u_A          156 LSIGNA  161 (308)
T ss_dssp             EECCSS
T ss_pred             EEccCC
Confidence            444444

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.24  E-value=3.9e-11  Score=93.39  Aligned_cols=101  Identities=26%  Similarity=0.328  Sum_probs=56.5

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      .+++.|++++|.+++. +   .+..+++|++|++++|.+++  ++. +..+++|++  +++|.+.+ ++. +..+++|++
T Consensus       107 ~~L~~L~l~~n~l~~~-~---~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~  177 (308)
T 1h6u_A          107 QSIKTLDLTSTQITDV-T---PLAGLSNLQVLYLDLNQITN--ISP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTT  177 (308)
T ss_dssp             TTCCEEECTTSCCCCC-G---GGTTCTTCCEEECCSSCCCC--CGG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCE
T ss_pred             CCCCEEECCCCCCCCc-h---hhcCCCCCCEEECCCCccCc--Ccc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCE
Confidence            5677777777776642 2   35666666666666666663  232 555666666  66666653 332 556666666


Q ss_pred             EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCC
Q 041168          131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAS  169 (177)
Q Consensus       131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g  169 (177)
                      |++++|  .+   .. ++. +..+++|++|++++|++++
T Consensus       178 L~l~~n--~l---~~-~~~-l~~l~~L~~L~L~~N~l~~  209 (308)
T 1h6u_A          178 LKADDN--KI---SD-ISP-LASLPNLIEVHLKNNQISD  209 (308)
T ss_dssp             EECCSS--CC---CC-CGG-GGGCTTCCEEECTTSCCCB
T ss_pred             EECCCC--cc---Cc-Chh-hcCCCCCCEEEccCCccCc
Confidence            666666  22   22 222 4455555555555555543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.23  E-value=6.5e-11  Score=90.24  Aligned_cols=100  Identities=24%  Similarity=0.296  Sum_probs=48.5

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      .+++.|++++|.+++..    .+..+++|++|++++|.+++  +|.. .. ++|++  +++|++.+ + +.+..+++|++
T Consensus        63 ~~L~~L~L~~N~i~~~~----~l~~l~~L~~L~L~~N~l~~--l~~~-~~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~  132 (263)
T 1xeu_A           63 TNLKELHLSHNQISDLS----PLKDLTKLEELSVNRNRLKN--LNGI-PS-ACLSRLFLDNNELRD-T-DSLIHLKNLEI  132 (263)
T ss_dssp             TTCCEEECCSSCCCCCG----GGTTCSSCCEEECCSSCCSC--CTTC-CC-SSCCEEECCSSCCSB-S-GGGTTCTTCCE
T ss_pred             CCCCEEECCCCccCCCh----hhccCCCCCEEECCCCccCC--cCcc-cc-CcccEEEccCCccCC-C-hhhcCcccccE
Confidence            45666666666655322    24555566666666666553  3321 11 44444  55555543 2 23455555555


Q ss_pred             EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCC
Q 041168          131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAS  169 (177)
Q Consensus       131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g  169 (177)
                      |++++|  .+   . .++ .+..+++|++|++++|.+++
T Consensus       133 L~Ls~N--~i---~-~~~-~l~~l~~L~~L~L~~N~i~~  164 (263)
T 1xeu_A          133 LSIRNN--KL---K-SIV-MLGFLSKLEVLDLHGNEITN  164 (263)
T ss_dssp             EECTTS--CC---C-BCG-GGGGCTTCCEEECTTSCCCB
T ss_pred             EECCCC--cC---C-CCh-HHccCCCCCEEECCCCcCcc
Confidence            555555  22   1 122 34445555555555555443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.22  E-value=3.9e-11  Score=100.90  Aligned_cols=102  Identities=26%  Similarity=0.259  Sum_probs=85.7

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCC-ChhhhCCCCCC
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQI-PAELLELSDLE  129 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~-p~~~~~l~~L~  129 (177)
                      .+++.|++++|.++ .+|.  .+..+++|+.|+|++|.+++  +| .++.+++|++  |++|++.+.. |..++.+++|+
T Consensus       463 ~~L~~L~Ls~N~l~-~lp~--~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~  536 (567)
T 1dce_A          463 LLVTHLDLSHNRLR-ALPP--ALAALRCLEVLQASDNALEN--VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLV  536 (567)
T ss_dssp             TTCCEEECCSSCCC-CCCG--GGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCC
T ss_pred             ccCcEeecCccccc-ccch--hhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCC
Confidence            58999999999999 6888  89999999999999999994  67 8999999999  9999999776 99999999999


Q ss_pred             EEeCCCCcCCcccCCCchhHHhhcCCCCCEEEe
Q 041168          130 SLDLSFNNFHLKLQGPSLANLAEKLANLKVLHL  162 (177)
Q Consensus       130 ~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~L  162 (177)
                      +|+|++|+|.-  ........+..+++|+.|++
T Consensus       537 ~L~L~~N~l~~--~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          537 LLNLQGNSLCQ--EEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             EEECTTSGGGG--SSSCTTHHHHHCTTCSEEEC
T ss_pred             EEEecCCcCCC--CccHHHHHHHHCcccCccCC
Confidence            99999995421  01122234566899999975

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.21  E-value=9.6e-12  Score=104.67  Aligned_cols=113  Identities=19%  Similarity=0.219  Sum_probs=68.8

Q ss_pred             CCCCCCCCCCCCCC-----ccceE-EEcCCCCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCcccc
Q 041168           28 VASWSQEEENRDCC-----LWDGI-KCNEDNGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIK  101 (177)
Q Consensus        28 l~~W~~~~~~~~~C-----~w~gv-~c~~~~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~  101 (177)
                      +.+|.   ....+|     .|.++ .|..  .+++.|++++|.+++ +|.  .+  +++|++|+|++|.++ . +|   .
T Consensus        33 l~~W~---~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~--~l--~~~L~~L~Ls~N~l~-~-ip---~   97 (571)
T 3cvr_A           33 WDKWE---KQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPD--NL--PPQITVLEITQNALI-S-LP---E   97 (571)
T ss_dssp             HHHHH---TTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCS--CC--CTTCSEEECCSSCCS-C-CC---C
T ss_pred             HHHHh---ccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCH--hH--cCCCCEEECcCCCCc-c-cc---c
Confidence            44575   455677     68888 6753  478889999888886 665  44  367777888777777 3 56   3


Q ss_pred             CCccccc--cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCC
Q 041168          102 NLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTA  168 (177)
Q Consensus       102 ~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~  168 (177)
                      .+++|++  +++|++.+ +|. +..  +|++|++++|  .+   ++ +|.   .+++|+.|+|++|.|+
T Consensus        98 ~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N--~l---~~-lp~---~l~~L~~L~Ls~N~l~  153 (571)
T 3cvr_A           98 LPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNN--QL---TM-LPE---LPALLEYINADNNQLT  153 (571)
T ss_dssp             CCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSS--CC---SC-CCC---CCTTCCEEECCSSCCS
T ss_pred             ccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCC--cC---CC-CCC---cCccccEEeCCCCccC
Confidence            4566666  66776664 454 433  5666666666  23   22 333   3444445555554444

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.21  E-value=8.6e-11  Score=99.54  Aligned_cols=101  Identities=25%  Similarity=0.276  Sum_probs=55.3

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      .+|+.|+|++|.+.+ + +  .+..+++|+.|+|++|.+..  + +.+..+++|+.  |++|.+.+.  ..+..+++|+.
T Consensus        87 ~~L~~L~Ls~N~l~~-l-~--~l~~l~~L~~L~Ls~N~l~~--l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~  157 (605)
T 1m9s_A           87 KNLGWLFLDENKIKD-L-S--SLKDLKKLKSLSLEHNGISD--I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDT  157 (605)
T ss_dssp             TTCCEEECCSSCCCC-C-T--TSTTCTTCCEEECTTSCCCC--C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSE
T ss_pred             CCCCEEECcCCCCCC-C-h--hhccCCCCCEEEecCCCCCC--C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCE
Confidence            344555555555443 1 1  34555555555555555552  2 23555556666  666666532  45566666666


Q ss_pred             EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCC
Q 041168          131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAS  169 (177)
Q Consensus       131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g  169 (177)
                      |+|++|  .+   ....|  +..+++|+.|+|++|.|++
T Consensus       158 L~Ls~N--~l---~~~~~--l~~l~~L~~L~Ls~N~i~~  189 (605)
T 1m9s_A          158 LSLEDN--QI---SDIVP--LAGLTKLQNLYLSKNHISD  189 (605)
T ss_dssp             EECCSS--CC---CCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred             EECcCC--cC---CCchh--hccCCCCCEEECcCCCCCC
Confidence            666666  33   33333  6666677777777776664

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.20  E-value=8.6e-11  Score=99.54  Aligned_cols=100  Identities=30%  Similarity=0.378  Sum_probs=46.5

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      .+|+.|+|++|.+.+.  +  .+..+++|+.|+|++|.+++  + ..+..+++|+.  |++|.+.+..|  +..+++|+.
T Consensus       109 ~~L~~L~Ls~N~l~~l--~--~l~~l~~L~~L~Ls~N~l~~--l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~  179 (605)
T 1m9s_A          109 KKLKSLSLEHNGISDI--N--GLVHLPQLESLYLGNNKITD--I-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQN  179 (605)
T ss_dssp             TTCCEEECTTSCCCCC--G--GGGGCTTCSEEECCSSCCCC--C-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             CCCCEEEecCCCCCCC--c--cccCCCccCEEECCCCccCC--c-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCE
Confidence            3455555555554431  1  34445555555555555542  2 34444555555  55555543322  445555555


Q ss_pred             EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCC
Q 041168          131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTA  168 (177)
Q Consensus       131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~  168 (177)
                      |+|++|  .+   . .++ .+..+++|+.|+|++|++.
T Consensus       180 L~Ls~N--~i---~-~l~-~l~~l~~L~~L~L~~N~l~  210 (605)
T 1m9s_A          180 LYLSKN--HI---S-DLR-ALAGLKNLDVLELFSQECL  210 (605)
T ss_dssp             EECCSS--CC---C-BCG-GGTTCTTCSEEECCSEEEE
T ss_pred             EECcCC--CC---C-CCh-HHccCCCCCEEEccCCcCc
Confidence            555555  22   1 122 2444555555555555544

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.20  E-value=1.3e-12  Score=102.16  Aligned_cols=116  Identities=23%  Similarity=0.215  Sum_probs=52.7

Q ss_pred             cEEEEEccCCccccccCCCcccccCcCCcEEEccCC-CCCCCCCCccccCCccccc--cccc-cCCCC-CChhhhCCC-C
Q 041168           54 HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNN-HFNFSEIPSEIKNLSRLTA--LSNP-SFFGQ-IPAELLELS-D  127 (177)
Q Consensus        54 ~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~p~~~~~l~~L~~--ls~n-~l~~~-~p~~~~~l~-~  127 (177)
                      ++++|++++|.+++..+.  .+..+++|++|++++| .+++..++..+..+++|++  +++| .+.+. ++..+..++ +
T Consensus       119 ~L~~L~L~~~~l~~~~~~--~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~  196 (336)
T 2ast_B          119 KLQNLSLEGLRLSDPIVN--TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET  196 (336)
T ss_dssp             CCSEEECTTCBCCHHHHH--HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred             CCCEEeCcCcccCHHHHH--HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccC
Confidence            444444444444433333  3444455555555554 3332102333444445555  4444 44321 233344555 5


Q ss_pred             CCEEeCCCCcCCcccCC-CchhHHhhcCCCCCEEEeeccc-CCCCCCcc
Q 041168          128 LESLDLSFNNFHLKLQG-PSLANLAEKLANLKVLHLGQVN-TASTVPYA  174 (177)
Q Consensus       128 L~~L~Ls~N~~~l~~~~-~~~p~~~~~l~~L~~L~Ls~N~-l~g~~p~~  174 (177)
                      |++|++++|.+.+   + ..++..+..+++|++|++++|. +++..+..
T Consensus       197 L~~L~l~~~~~~~---~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~  242 (336)
T 2ast_B          197 ITQLNLSGYRKNL---QKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE  242 (336)
T ss_dssp             CCEEECCSCGGGS---CHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG
T ss_pred             CCEEEeCCCcccC---CHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHH
Confidence            5555555552111   1 2344455556666666666665 44444433

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.20  E-value=4.3e-11  Score=94.24  Aligned_cols=83  Identities=24%  Similarity=0.191  Sum_probs=71.0

Q ss_pred             CcEEEEEccC-CccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCC
Q 041168           53 GHVIRLDLTS-SCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLE  129 (177)
Q Consensus        53 ~~l~~L~l~~-n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~  129 (177)
                      .+|+.|+|++ |.+++..+.  .|..+++|+.|+|++|.|++. .|..|..+++|++  |++|+|.+..+..+..++ |+
T Consensus        31 ~~L~~L~l~~~n~l~~~~~~--~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~  106 (347)
T 2ifg_A           31 ENLTELYIENQQHLQHLELR--DLRGLGELRNLTIVKSGLRFV-APDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQ  106 (347)
T ss_dssp             SCCSEEECCSCSSCCEECGG--GSCSCCCCSEEECCSSCCCEE-CTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CC
T ss_pred             CCeeEEEccCCCCCCCcChh--HhccccCCCEEECCCCcccee-CHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ce
Confidence            5799999996 999977667  799999999999999999976 6778999999999  999999965555555555 99


Q ss_pred             EEeCCCCcCC
Q 041168          130 SLDLSFNNFH  139 (177)
Q Consensus       130 ~L~Ls~N~~~  139 (177)
                      .|+|.+|+|.
T Consensus       107 ~l~l~~N~~~  116 (347)
T 2ifg_A          107 ELVLSGNPLH  116 (347)
T ss_dssp             EEECCSSCCC
T ss_pred             EEEeeCCCcc
Confidence            9999999553

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.17  E-value=1e-10  Score=89.16  Aligned_cols=101  Identities=20%  Similarity=0.239  Sum_probs=84.1

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      .+++.|++++|.++. ++   .+..+++|++|++++|.+++  ++. +..+++|++  +++|++.+ +|. +.. ++|++
T Consensus        41 ~~L~~L~l~~n~i~~-l~---~l~~l~~L~~L~L~~N~i~~--~~~-l~~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~~  110 (263)
T 1xeu_A           41 SGVQNFNGDNSNIQS-LA---GMQFFTNLKELHLSHNQISD--LSP-LKDLTKLEELSVNRNRLKN-LNG-IPS-ACLSR  110 (263)
T ss_dssp             TTCSEEECTTSCCCC-CT---TGGGCTTCCEEECCSSCCCC--CGG-GTTCSSCCEEECCSSCCSC-CTT-CCC-SSCCE
T ss_pred             CcCcEEECcCCCccc-ch---HHhhCCCCCEEECCCCccCC--Chh-hccCCCCCEEECCCCccCC-cCc-ccc-CcccE
Confidence            679999999999884 43   57889999999999999995  555 899999999  99999985 444 333 89999


Q ss_pred             EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCC
Q 041168          131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAST  170 (177)
Q Consensus       131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~  170 (177)
                      |++++|  .+   . .++ .+..+++|++|++++|++++.
T Consensus       111 L~L~~N--~l---~-~~~-~l~~l~~L~~L~Ls~N~i~~~  143 (263)
T 1xeu_A          111 LFLDNN--EL---R-DTD-SLIHLKNLEILSIRNNKLKSI  143 (263)
T ss_dssp             EECCSS--CC---S-BSG-GGTTCTTCCEEECTTSCCCBC
T ss_pred             EEccCC--cc---C-CCh-hhcCcccccEEECCCCcCCCC
Confidence            999999  44   2 344 588999999999999999863

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.16  E-value=6.8e-11  Score=96.80  Aligned_cols=82  Identities=20%  Similarity=0.264  Sum_probs=38.5

Q ss_pred             ccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhhc
Q 041168           76 FQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEK  153 (177)
Q Consensus        76 ~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~  153 (177)
                      ..+++|+.|++++|.+++. .|  +..+++|+.  +++|.+.+.  ..+..+++|++|++++|  .+   .+..|  +..
T Consensus       306 ~~l~~L~~L~L~~n~l~~~-~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n--~l---~~~~~--~~~  373 (466)
T 1o6v_A          306 SNLKNLTYLTLYFNNISDI-SP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHN--QI---SDLTP--LAN  373 (466)
T ss_dssp             GGCTTCSEEECCSSCCSCC-GG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSS--CC---CBCGG--GTT
T ss_pred             cCCCCCCEEECcCCcCCCc-hh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCC--cc---Cccch--hhc
Confidence            3444444444444444432 11  344444444  444544432  23455555555555555  23   23333  455


Q ss_pred             CCCCCEEEeecccCCC
Q 041168          154 LANLKVLHLGQVNTAS  169 (177)
Q Consensus       154 l~~L~~L~Ls~N~l~g  169 (177)
                      +++|++|++++|++++
T Consensus       374 l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          374 LTRITQLGLNDQAWTN  389 (466)
T ss_dssp             CTTCCEEECCCEEEEC
T ss_pred             CCCCCEEeccCCcccC
Confidence            5555555555555554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.14  E-value=1.7e-10  Score=94.43  Aligned_cols=86  Identities=27%  Similarity=0.303  Sum_probs=47.8

Q ss_pred             cccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhh
Q 041168           75 LFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAE  152 (177)
Q Consensus        75 l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~  152 (177)
                      +..+++|+.|++++|.+++  ++. +..+++|+.  +++|++.+..|  +..+++|++|++++|  .+   .+ + ..+.
T Consensus       283 ~~~l~~L~~L~L~~n~l~~--~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n--~l---~~-~-~~l~  350 (466)
T 1o6v_A          283 LAGLTALTNLELNENQLED--ISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNN--KV---SD-V-SSLA  350 (466)
T ss_dssp             GTTCTTCSEEECCSSCCSC--CGG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSS--CC---CC-C-GGGT
T ss_pred             ccCCCccCeEEcCCCcccC--chh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCC--cc---CC-c-hhhc
Confidence            3444555555555555543  222 455555555  55665554332  456666666666666  33   22 2 3466


Q ss_pred             cCCCCCEEEeecccCCCCCC
Q 041168          153 KLANLKVLHLGQVNTASTVP  172 (177)
Q Consensus       153 ~l~~L~~L~Ls~N~l~g~~p  172 (177)
                      .+++|+.|++++|++++..|
T Consensus       351 ~l~~L~~L~l~~n~l~~~~~  370 (466)
T 1o6v_A          351 NLTNINWLSAGHNQISDLTP  370 (466)
T ss_dssp             TCTTCCEEECCSSCCCBCGG
T ss_pred             cCCCCCEEeCCCCccCccch
Confidence            77777777777777776554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.13  E-value=9.9e-12  Score=99.31  Aligned_cols=111  Identities=18%  Similarity=0.233  Sum_probs=68.9

Q ss_pred             CcEEEEEccCCcccc-----ccCCCcccccCcCCcEEEccCCCCC----CCCCCccccCCccccc--cccccCCCC----
Q 041168           53 GHVIRLDLTSSCLYG-----SINSSSSLFQLVHLEWLVLSNNHFN----FSEIPSEIKNLSRLTA--LSNPSFFGQ----  117 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~-----~~~~~~~l~~l~~L~~L~Ls~n~l~----~~~~p~~~~~l~~L~~--ls~n~l~~~----  117 (177)
                      ++++.|++++|.++.     ..+.  .+..+++|++|+|++|.++    .. +|..+..+++|++  |++|.+.+.    
T Consensus       187 ~~L~~L~L~~n~l~~~g~~~l~~~--~l~~~~~L~~L~Ls~n~l~~~g~~~-l~~~l~~~~~L~~L~L~~n~i~~~~~~~  263 (386)
T 2ca6_A          187 RLLHTVKMVQNGIRPEGIEHLLLE--GLAYCQELKVLDLQDNTFTHLGSSA-LAIALKSWPNLRELGLNDCLLSARGAAA  263 (386)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHHHT--TGGGCTTCCEEECCSSCCHHHHHHH-HHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred             CCcCEEECcCCCCCHhHHHHHHHH--HhhcCCCccEEECcCCCCCcHHHHH-HHHHHccCCCcCEEECCCCCCchhhHHH
Confidence            356666666666652     2333  4556667777777777763    23 5556666777777  777776543    


Q ss_pred             CChhhh--CCCCCCEEeCCCCcCCcccCCC----chhHHh-hcCCCCCEEEeecccCCCCC
Q 041168          118 IPAELL--ELSDLESLDLSFNNFHLKLQGP----SLANLA-EKLANLKVLHLGQVNTASTV  171 (177)
Q Consensus       118 ~p~~~~--~l~~L~~L~Ls~N~~~l~~~~~----~~p~~~-~~l~~L~~L~Ls~N~l~g~~  171 (177)
                      ++..+.  .+++|++|+|++|  .+   ..    .+|..+ .++++|++|++++|++++..
T Consensus       264 l~~~l~~~~~~~L~~L~L~~n--~i---~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          264 VVDAFSKLENIGLQTLRLQYN--EI---ELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HHHHHHTCSSCCCCEEECCSS--CC---BHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             HHHHHhhccCCCeEEEECcCC--cC---CHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            344443  3677777777777  34   33    256655 55777888888888777654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.13  E-value=2e-10  Score=94.19  Aligned_cols=98  Identities=17%  Similarity=0.197  Sum_probs=62.7

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      .++++|++++|.+++. |   .+..+++|++|++++|.+++  +|  ++.+++|++  +++|.+.+. +  ++.+++|++
T Consensus        42 ~~L~~L~Ls~n~l~~~-~---~l~~l~~L~~L~Ls~n~l~~--~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~  110 (457)
T 3bz5_A           42 ATLTSLDCHNSSITDM-T---GIEKLTGLTKLICTSNNITT--LD--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTY  110 (457)
T ss_dssp             TTCCEEECCSSCCCCC-T---TGGGCTTCSEEECCSSCCSC--CC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCE
T ss_pred             CCCCEEEccCCCcccC-h---hhcccCCCCEEEccCCcCCe--Ec--cccCCCCCEEECcCCCCcee-e--cCCCCcCCE
Confidence            4677777777777653 2   46667777777777777764  33  666677777  677776643 3  666777777


Q ss_pred             EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCC
Q 041168          131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAS  169 (177)
Q Consensus       131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g  169 (177)
                      |++++|  .+   .+ ++  +..+++|++|++++|.+++
T Consensus       111 L~L~~N--~l---~~-l~--~~~l~~L~~L~l~~N~l~~  141 (457)
T 3bz5_A          111 LNCDTN--KL---TK-LD--VSQNPLLTYLNCARNTLTE  141 (457)
T ss_dssp             EECCSS--CC---SC-CC--CTTCTTCCEEECTTSCCSC
T ss_pred             EECCCC--cC---Ce-ec--CCCCCcCCEEECCCCccce
Confidence            777777  33   22 33  5566666666666666654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.13  E-value=4e-11  Score=100.90  Aligned_cols=84  Identities=20%  Similarity=0.218  Sum_probs=51.0

Q ss_pred             CcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCC-------CEEeCCCCcCCcccCCCchh
Q 041168           78 LVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDL-------ESLDLSFNNFHLKLQGPSLA  148 (177)
Q Consensus        78 l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L-------~~L~Ls~N~~~l~~~~~~~p  148 (177)
                      +++|++|+|++|.+++  +|. +.  ++|++  |++|++. .+|. +..  +|       +.|+|++|  .+    ..+|
T Consensus       159 l~~L~~L~Ls~N~L~~--lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N--~l----~~lp  223 (571)
T 3cvr_A          159 PTSLEVLSVRNNQLTF--LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCREN--RI----THIP  223 (571)
T ss_dssp             CTTCCEEECCSSCCSC--CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSS--CC----CCCC
T ss_pred             CCCcCEEECCCCCCCC--cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCC--cc----eecC
Confidence            3455555555555553  444 33  55666  6666665 4444 433  55       77777777  33    3467


Q ss_pred             HHhhcCCCCCEEEeecccCCCCCCcccc
Q 041168          149 NLAEKLANLKVLHLGQVNTASTVPYALA  176 (177)
Q Consensus       149 ~~~~~l~~L~~L~Ls~N~l~g~~p~~l~  176 (177)
                      ..+..+++|+.|+|++|++++.+|..++
T Consensus       224 ~~l~~l~~L~~L~L~~N~l~~~~p~~l~  251 (571)
T 3cvr_A          224 ENILSLDPTCTIILEDNPLSSRIRESLS  251 (571)
T ss_dssp             GGGGGSCTTEEEECCSSSCCHHHHHHHH
T ss_pred             HHHhcCCCCCEEEeeCCcCCCcCHHHHH
Confidence            7777788888888888888877776543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.13  E-value=3.8e-13  Score=98.27  Aligned_cols=106  Identities=20%  Similarity=0.178  Sum_probs=87.8

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      .++++|++++|.+++ +|   .+..+++|++|++++|.++ . +|..+..+++|++  +++|++.+ +| .+..+++|++
T Consensus        48 ~~L~~L~ls~n~l~~-l~---~~~~l~~L~~L~l~~n~l~-~-l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~  119 (198)
T 1ds9_A           48 KACKHLALSTNNIEK-IS---SLSGMENLRILSLGRNLIK-K-IENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRV  119 (198)
T ss_dssp             TTCSEEECSEEEESC-CC---CHHHHTTCCEEEEEEEEEC-S-CSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSE
T ss_pred             CCCCEEECCCCCCcc-cc---ccccCCCCCEEECCCCCcc-c-ccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCE
Confidence            578999999999886 44   5788999999999999998 4 7887778889999  99999985 54 6888999999


Q ss_pred             EeCCCCcCCcccCCCchh--HHhhcCCCCCEEEeecccCCCCCC
Q 041168          131 LDLSFNNFHLKLQGPSLA--NLAEKLANLKVLHLGQVNTASTVP  172 (177)
Q Consensus       131 L~Ls~N~~~l~~~~~~~p--~~~~~l~~L~~L~Ls~N~l~g~~p  172 (177)
                      |++++|  .+    ..++  ..+..+++|++|++++|++.+.+|
T Consensus       120 L~l~~N--~i----~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  157 (198)
T 1ds9_A          120 LYMSNN--KI----TNWGEIDKLAALDKLEDLLLAGNPLYNDYK  157 (198)
T ss_dssp             EEESEE--EC----CCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred             EECCCC--cC----CchhHHHHHhcCCCCCEEEecCCccccccc
Confidence            999999  44    2333  468899999999999999876544

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.08  E-value=3.9e-12  Score=99.48  Aligned_cols=80  Identities=23%  Similarity=0.227  Sum_probs=36.2

Q ss_pred             cEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEE
Q 041168           54 HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESL  131 (177)
Q Consensus        54 ~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L  131 (177)
                      +++.|++++|.+.+..+.   +..+++|++|++++|.++...++..+..+++|++  +++|.+.+..+..+..+++|++|
T Consensus        71 ~l~~L~l~~n~l~~~~~~---~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L  147 (336)
T 2ast_B           71 GVIAFRCPRSFMDQPLAE---HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL  147 (336)
T ss_dssp             TCSEEECTTCEECSCCCS---CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred             cceEEEcCCccccccchh---hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEE
Confidence            445555555554433222   3344555555555554432102333444444544  44444443344444444555555


Q ss_pred             eCCCC
Q 041168          132 DLSFN  136 (177)
Q Consensus       132 ~Ls~N  136 (177)
                      ++++|
T Consensus       148 ~L~~~  152 (336)
T 2ast_B          148 NLSGC  152 (336)
T ss_dssp             ECTTC
T ss_pred             ECCCC
Confidence            55444

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.05  E-value=2.5e-10  Score=97.01  Aligned_cols=82  Identities=24%  Similarity=0.222  Sum_probs=61.8

Q ss_pred             cCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhhcCCC
Q 041168           79 VHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLAN  156 (177)
Q Consensus        79 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~  156 (177)
                      ++|+.|++++|.+++  +|   ..+++|++  +++|++. .+|.   .+++|++|+|++|  .+   . .+|..+..+++
T Consensus       221 ~~L~~L~Ls~N~L~~--lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N--~L---~-~lp~~l~~l~~  285 (622)
T 3g06_A          221 SGLKELIVSGNRLTS--LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRN--QL---T-RLPESLIHLSS  285 (622)
T ss_dssp             TTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSS--CC---C-SCCGGGGGSCT
T ss_pred             CCCCEEEccCCccCc--CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCC--CC---C-cCCHHHhhccc
Confidence            567777777777773  45   34566777  8888887 5555   5678899999988  45   3 57888999999


Q ss_pred             CCEEEeecccCCCCCCccc
Q 041168          157 LKVLHLGQVNTASTVPYAL  175 (177)
Q Consensus       157 L~~L~Ls~N~l~g~~p~~l  175 (177)
                      |+.|+|++|++++.+|..+
T Consensus       286 L~~L~L~~N~l~~~~~~~l  304 (622)
T 3g06_A          286 ETTVNLEGNPLSERTLQAL  304 (622)
T ss_dssp             TCEEECCSCCCCHHHHHHH
T ss_pred             cCEEEecCCCCCCcCHHHH
Confidence            9999999999988766644

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.05  E-value=8.4e-10  Score=90.46  Aligned_cols=82  Identities=17%  Similarity=0.078  Sum_probs=53.5

Q ss_pred             cccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhh
Q 041168           75 LFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAE  152 (177)
Q Consensus        75 l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~  152 (177)
                      +..+++|++|++++|.+++  +|  +..+++|+.  +++|++.+.   .++.+++|++|++++|  .+   .+ +|  +.
T Consensus       166 ~~~l~~L~~L~ls~n~l~~--l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N--~l---~~-ip--~~  230 (457)
T 3bz5_A          166 VTPQTQLTTLDCSFNKITE--LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSN--KL---TE-ID--VT  230 (457)
T ss_dssp             CTTCTTCCEEECCSSCCCC--CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSS--CC---SC-CC--CT
T ss_pred             cccCCcCCEEECCCCccce--ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCC--cc---cc-cC--cc
Confidence            3455666666666666663  33  556666666  677776643   2667777777777777  34   33 45  66


Q ss_pred             cCCCCCEEEeecccCCCCC
Q 041168          153 KLANLKVLHLGQVNTASTV  171 (177)
Q Consensus       153 ~l~~L~~L~Ls~N~l~g~~  171 (177)
                      .+++|++|++++|++++..
T Consensus       231 ~l~~L~~L~l~~N~l~~~~  249 (457)
T 3bz5_A          231 PLTQLTYFDCSVNPLTELD  249 (457)
T ss_dssp             TCTTCSEEECCSSCCSCCC
T ss_pred             ccCCCCEEEeeCCcCCCcC
Confidence            7778888888888777643

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.05  E-value=1.4e-11  Score=98.37  Aligned_cols=109  Identities=16%  Similarity=0.136  Sum_probs=61.0

Q ss_pred             cEEEEEccCCccc-cccC---CCcccccCcCCcEEEccCCCCCCCC----CCccccCCccccc--cccccCC----CCCC
Q 041168           54 HVIRLDLTSSCLY-GSIN---SSSSLFQLVHLEWLVLSNNHFNFSE----IPSEIKNLSRLTA--LSNPSFF----GQIP  119 (177)
Q Consensus        54 ~l~~L~l~~n~l~-~~~~---~~~~l~~l~~L~~L~Ls~n~l~~~~----~p~~~~~l~~L~~--ls~n~l~----~~~p  119 (177)
                      +++.|++++|.++ +.++   .  .+..+++|++|++++|.++...    .+..+..+++|++  |++|.+.    ..+|
T Consensus       160 ~L~~L~L~~n~l~~~~~~~l~~--~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~  237 (386)
T 2ca6_A          160 PLRSIICGRNRLENGSMKEWAK--TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA  237 (386)
T ss_dssp             CCCEEECCSSCCTGGGHHHHHH--HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred             CCcEEECCCCCCCcHHHHHHHH--HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHH
Confidence            5555566555554 1222   2  3345566666666666665100    2224556666666  6666663    3455


Q ss_pred             hhhhCCCCCCEEeCCCCcCCcccCCCc----hhHHhhc--CCCCCEEEeecccCCC
Q 041168          120 AELLELSDLESLDLSFNNFHLKLQGPS----LANLAEK--LANLKVLHLGQVNTAS  169 (177)
Q Consensus       120 ~~~~~l~~L~~L~Ls~N~~~l~~~~~~----~p~~~~~--l~~L~~L~Ls~N~l~g  169 (177)
                      ..+..+++|++|+|++|.  +   ...    ++..+..  +++|++|+|++|.+++
T Consensus       238 ~~l~~~~~L~~L~L~~n~--i---~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          238 IALKSWPNLRELGLNDCL--L---SARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             HHGGGCTTCCEEECTTCC--C---CHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             HHHccCCCcCEEECCCCC--C---chhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence            566666777777777773  3   222    3455533  6777777777777765

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.05  E-value=1.8e-10  Score=94.31  Aligned_cols=84  Identities=27%  Similarity=0.362  Sum_probs=39.8

Q ss_pred             cCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCC--chhHHhhcC
Q 041168           79 VHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGP--SLANLAEKL  154 (177)
Q Consensus        79 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~--~~p~~~~~l  154 (177)
                      ++|++|++++|++++  +|..   +++|++  +++|++. .+|.   .+++|++|++++|+  +   .+  .+|..+..+
T Consensus       317 ~~L~~L~Ls~N~l~~--lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~--l---~~l~~ip~~l~~L  382 (454)
T 1jl5_A          317 PSLEELNVSNNKLIE--LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNP--L---REFPDIPESVEDL  382 (454)
T ss_dssp             TTCCEEECCSSCCSC--CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSC--C---SSCCCCCTTCCEE
T ss_pred             CcCCEEECCCCcccc--cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCC--C---CcCCCChHHHHhh
Confidence            366777777777663  4543   356666  7777776 4555   46778888888884  4   33  566666666


Q ss_pred             -------------CCCCEEEeecccCCC--CCCcccc
Q 041168          155 -------------ANLKVLHLGQVNTAS--TVPYALA  176 (177)
Q Consensus       155 -------------~~L~~L~Ls~N~l~g--~~p~~l~  176 (177)
                                   ++|++|++++|++++  .+|.+++
T Consensus       383 ~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~  419 (454)
T 1jl5_A          383 RMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVE  419 (454)
T ss_dssp             ECCC---------------------------------
T ss_pred             hhcccccccccccCcCCEEECCCCcCCccccchhhHh
Confidence                         778888888888876  6777654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.04  E-value=2.9e-11  Score=95.98  Aligned_cols=117  Identities=23%  Similarity=0.278  Sum_probs=75.0

Q ss_pred             cEEEEEccCCccccccCCCcccccC-----cCCcEEEccCCCCCCCCCCcc----ccCC-ccccc--cccccCCCCCChh
Q 041168           54 HVIRLDLTSSCLYGSINSSSSLFQL-----VHLEWLVLSNNHFNFSEIPSE----IKNL-SRLTA--LSNPSFFGQIPAE  121 (177)
Q Consensus        54 ~l~~L~l~~n~l~~~~~~~~~l~~l-----~~L~~L~Ls~n~l~~~~~p~~----~~~l-~~L~~--ls~n~l~~~~p~~  121 (177)
                      ++++|++++|.+++..+.  .+..+     ++|++|+|++|.++.. .+..    +..+ ++|++  +++|.+.+..+..
T Consensus        52 ~L~~L~Ls~N~l~~~~~~--~l~~~l~~~~~~L~~L~Ls~n~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~  128 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKNSD--ELVQILAAIPANVTSLNLSGNFLSYK-SSDELVKTLAAIPFTITVLDLGWNDFSSKSSSE  128 (362)
T ss_dssp             TCCEEECCSSCGGGSCHH--HHHHHHHTSCTTCCEEECCSSCGGGS-CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred             ceeEEECcCCCCCHHHHH--HHHHHHhccCCCccEEECcCCcCChH-HHHHHHHHHHhCCCCccEEECcCCcCCcHHHHH
Confidence            688888888887765444  45543     7788888888888754 3433    3333 67777  8888887555444


Q ss_pred             hh----C-CCCCCEEeCCCCcCCcccCCCchhHHhhcCC-CCCEEEeecccCCCCCCcc
Q 041168          122 LL----E-LSDLESLDLSFNNFHLKLQGPSLANLAEKLA-NLKVLHLGQVNTASTVPYA  174 (177)
Q Consensus       122 ~~----~-l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~-~L~~L~Ls~N~l~g~~p~~  174 (177)
                      +.    . .++|++|+|++|.+.-.. ...++..+..++ +|++|+|++|.+++..+..
T Consensus       129 l~~~l~~~~~~L~~L~Ls~N~l~~~~-~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~  186 (362)
T 3goz_A          129 FKQAFSNLPASITSLNLRGNDLGIKS-SDELIQILAAIPANVNSLNLRGNNLASKNCAE  186 (362)
T ss_dssp             HHHHHTTSCTTCCEEECTTSCGGGSC-HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHH
T ss_pred             HHHHHHhCCCceeEEEccCCcCCHHH-HHHHHHHHhcCCccccEeeecCCCCchhhHHH
Confidence            33    3 358888888888432100 013455566665 8888888888887655543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.01  E-value=8e-11  Score=93.43  Aligned_cols=111  Identities=22%  Similarity=0.258  Sum_probs=85.2

Q ss_pred             CcEEEEEccCCccccccC----CCcccccCc-CCcEEEccCCCCCCCCCCccccCC-----ccccc--cccccCCCCCCh
Q 041168           53 GHVIRLDLTSSCLYGSIN----SSSSLFQLV-HLEWLVLSNNHFNFSEIPSEIKNL-----SRLTA--LSNPSFFGQIPA  120 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~----~~~~l~~l~-~L~~L~Ls~n~l~~~~~p~~~~~l-----~~L~~--ls~n~l~~~~p~  120 (177)
                      .+++.|++++|.+++..+    .  .+..++ +|++|+|++|.++.. .+..+..+     ++|++  +++|.+.+..+.
T Consensus        22 ~~L~~L~Ls~n~l~~~~~~~l~~--~l~~~~~~L~~L~Ls~N~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~   98 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSISTVELIQ--AFANTPASVTSLNLSGNSLGFK-NSDELVQILAAIPANVTSLNLSGNFLSYKSSD   98 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHH--HHHTCCTTCCEEECCSSCGGGS-CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred             CCceEEEccCCCCChHHHHHHHH--HHHhCCCceeEEECcCCCCCHH-HHHHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence            469999999999986554    5  677788 899999999999865 56666664     88999  999999876666


Q ss_pred             hh----hCC-CCCCEEeCCCCcCCcccCCCchhHH----hhc-CCCCCEEEeecccCCCCC
Q 041168          121 EL----LEL-SDLESLDLSFNNFHLKLQGPSLANL----AEK-LANLKVLHLGQVNTASTV  171 (177)
Q Consensus       121 ~~----~~l-~~L~~L~Ls~N~~~l~~~~~~~p~~----~~~-l~~L~~L~Ls~N~l~g~~  171 (177)
                      .+    ..+ ++|++|++++|.  +   +...+..    +.. .++|++|+|++|.+++..
T Consensus        99 ~l~~~l~~~~~~L~~L~Ls~N~--l---~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  154 (362)
T 3goz_A           99 ELVKTLAAIPFTITVLDLGWND--F---SSKSSSEFKQAFSNLPASITSLNLRGNDLGIKS  154 (362)
T ss_dssp             HHHHHHHTSCTTCCEEECCSSC--G---GGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSC
T ss_pred             HHHHHHHhCCCCccEEECcCCc--C---CcHHHHHHHHHHHhCCCceeEEEccCCcCCHHH
Confidence            44    444 899999999994  4   3333333    444 369999999999998543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.99  E-value=3.5e-12  Score=93.14  Aligned_cols=103  Identities=27%  Similarity=0.310  Sum_probs=83.4

Q ss_pred             cEEEEEccCCccccccC------CCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCC
Q 041168           54 HVIRLDLTSSCLYGSIN------SSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLEL  125 (177)
Q Consensus        54 ~l~~L~l~~n~l~~~~~------~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l  125 (177)
                      .++.++++.+.+.+..+      .  .+..+++|++|++++|.++.  +| .+..+++|++  +++|.+. .+|..+..+
T Consensus        19 ~l~~l~l~~~~l~~~~~~l~~l~~--~~~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~   92 (198)
T 1ds9_A           19 SVVATEAEKVELHGMIPPIEKMDA--TLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLIK-KIENLDAVA   92 (198)
T ss_dssp             CCCCTTCSEEECCBCCTTCCCCHH--HHHHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHH
T ss_pred             cccCcchheeEeccccCcHhhhhH--HHhcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCCcc-cccchhhcC
Confidence            44555555555554433      3  57889999999999999984  67 8889999999  9999998 778888888


Q ss_pred             CCCCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCC
Q 041168          126 SDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAS  169 (177)
Q Consensus       126 ~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g  169 (177)
                      ++|++|++++|  .+   . .+| .+..+++|++|++++|.+++
T Consensus        93 ~~L~~L~L~~N--~l---~-~l~-~~~~l~~L~~L~l~~N~i~~  129 (198)
T 1ds9_A           93 DTLEELWISYN--QI---A-SLS-GIEKLVNLRVLYMSNNKITN  129 (198)
T ss_dssp             HHCSEEEEEEE--EC---C-CHH-HHHHHHHSSEEEESEEECCC
T ss_pred             CcCCEEECcCC--cC---C-cCC-ccccCCCCCEEECCCCcCCc
Confidence            99999999999  45   3 366 68889999999999999984

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.95  E-value=2.3e-10  Score=97.23  Aligned_cols=92  Identities=21%  Similarity=0.247  Sum_probs=51.1

Q ss_pred             CCCCCCCCCCCCCCccceEEE------cCCCCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCcccc
Q 041168           28 VASWSQEEENRDCCLWDGIKC------NEDNGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIK  101 (177)
Q Consensus        28 l~~W~~~~~~~~~C~w~gv~c------~~~~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~  101 (177)
                      ...|.   ...++|.|.+..+      .....+++.|++++|.++ .+|.  .+.  ++|++|++++|.++ . +|.   
T Consensus        12 w~~W~---~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~--~l~--~~L~~L~L~~N~l~-~-lp~---   78 (622)
T 3g06_A           12 WSAWR---RAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPD--CLP--AHITTLVIPDNNLT-S-LPA---   78 (622)
T ss_dssp             HHHHH---HTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCS--CCC--TTCSEEEECSCCCS-C-CCC---
T ss_pred             HHHHH---hcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccCh--hhC--CCCcEEEecCCCCC-C-CCC---
Confidence            45676   5567888865322      111134667777777766 4554  343  56666666666666 2 444   


Q ss_pred             CCccccc--cccccCCCCCChhhhCCCCCCEEeCCCC
Q 041168          102 NLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFN  136 (177)
Q Consensus       102 ~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N  136 (177)
                      .+++|++  +++|++. .+|.   .+++|++|++++|
T Consensus        79 ~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N  111 (622)
T 3g06_A           79 LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSN  111 (622)
T ss_dssp             CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSC
T ss_pred             cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCC
Confidence            3455555  6666655 3443   4455555555555

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.93  E-value=1.7e-09  Score=85.45  Aligned_cols=103  Identities=17%  Similarity=0.091  Sum_probs=82.2

Q ss_pred             EEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCC-ccccCCccccc--cccccCCCCCCh-hhhCCCCCCE-E
Q 041168           57 RLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIP-SEIKNLSRLTA--LSNPSFFGQIPA-ELLELSDLES-L  131 (177)
Q Consensus        57 ~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p-~~~~~l~~L~~--ls~n~l~~~~p~-~~~~l~~L~~-L  131 (177)
                      +++.++++++ .+|.  .+  .+++++|+|++|+|+.  +| ..|..+++|++  |++|++.+.+|. .|..++++.+ +
T Consensus        13 ~v~C~~~~Lt-~iP~--~l--~~~l~~L~Ls~N~i~~--i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l   85 (350)
T 4ay9_X           13 VFLCQESKVT-EIPS--DL--PRNAIELRFVLTKLRV--IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR   85 (350)
T ss_dssp             EEEEESTTCC-SCCT--TC--CTTCSEEEEESCCCSE--ECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEE
T ss_pred             EEEecCCCCC-ccCc--Cc--CCCCCEEEccCCcCCC--cCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhh
Confidence            5778889988 5676  55  4689999999999994  66 56899999999  999998766654 5788888876 5


Q ss_pred             eCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCC
Q 041168          132 DLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTV  171 (177)
Q Consensus       132 ~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~  171 (177)
                      .+..|  .+   ....|..|..+++|++|++++|++.+..
T Consensus        86 ~~~~N--~l---~~l~~~~f~~l~~L~~L~l~~n~l~~~~  120 (350)
T 4ay9_X           86 IEKAN--NL---LYINPEAFQNLPNLQYLLISNTGIKHLP  120 (350)
T ss_dssp             EEEET--TC---CEECTTSBCCCTTCCEEEEEEECCSSCC
T ss_pred             cccCC--cc---cccCchhhhhccccccccccccccccCC
Confidence            55677  45   4445677899999999999999998643

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.90  E-value=4.8e-09  Score=85.88  Aligned_cols=104  Identities=18%  Similarity=0.152  Sum_probs=54.2

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      .++++|++++|.+++ +|   .+..+++|++|++++|.+++  +|..+   .+|++  +++|++.+ +| .++.+++|++
T Consensus       131 ~~L~~L~L~~n~l~~-lp---~~~~l~~L~~L~l~~N~l~~--lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~  199 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK-LP---ELQNSSFLKIIDVDNNSLKK--LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTA  199 (454)
T ss_dssp             TTCCEEECCSSCCSS-CC---CCTTCTTCCEEECCSSCCSC--CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCE
T ss_pred             CCCCEEECcCCCCCC-Cc---ccCCCCCCCEEECCCCcCcc--cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCE
Confidence            356666666666654 33   35666666666666666653  44332   24444  55555553 33 3555555555


Q ss_pred             EeCCCCcCCcccC---------------CCchhHHhhcCCCCCEEEeecccCCC
Q 041168          131 LDLSFNNFHLKLQ---------------GPSLANLAEKLANLKVLHLGQVNTAS  169 (177)
Q Consensus       131 L~Ls~N~~~l~~~---------------~~~~p~~~~~l~~L~~L~Ls~N~l~g  169 (177)
                      |++++|.+.- ++               ...+| .+..+++|++|++++|++++
T Consensus       200 L~l~~N~l~~-l~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~  251 (454)
T 1jl5_A          200 IYADNNSLKK-LPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKT  251 (454)
T ss_dssp             EECCSSCCSS-CCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS
T ss_pred             EECCCCcCCc-CCCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCc
Confidence            5555553210 00               01234 25566666666666666664

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.81  E-value=1.1e-10  Score=94.76  Aligned_cols=63  Identities=24%  Similarity=0.061  Sum_probs=33.2

Q ss_pred             CCccccc--cccccCCCCCChhhhC-----CCCCCEEeCCCCcCCcccCCC----chhHHhhcCCCCCEEEeecccCCC
Q 041168          102 NLSRLTA--LSNPSFFGQIPAELLE-----LSDLESLDLSFNNFHLKLQGP----SLANLAEKLANLKVLHLGQVNTAS  169 (177)
Q Consensus       102 ~l~~L~~--ls~n~l~~~~p~~~~~-----l~~L~~L~Ls~N~~~l~~~~~----~~p~~~~~l~~L~~L~Ls~N~l~g  169 (177)
                      .+++|++  +++|.+.+..+..+..     .++|++|++++|  .+   +.    .+|..+..+++|++|++++|++++
T Consensus       339 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n--~i---~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          339 QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC--DV---SDSSCSSLAATLLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             HCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS--CC---CHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             hCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC--CC---ChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence            3445555  5555554322222221     445666666666  33   22    455666666777777777776653

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.78  E-value=4.9e-10  Score=91.01  Aligned_cols=109  Identities=17%  Similarity=0.094  Sum_probs=80.3

Q ss_pred             CcEEEEEccCCccccc----cCCCcccccCcCCcEEEccCCCCCCCCCCccccC-----Cccccc--cccccCCCC----
Q 041168           53 GHVIRLDLTSSCLYGS----INSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKN-----LSRLTA--LSNPSFFGQ----  117 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~----~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~-----l~~L~~--ls~n~l~~~----  117 (177)
                      .+++.|++++|.+++.    ++.  .+..+++|++|++++|.++.. .+..+..     .++|++  +++|.+.+.    
T Consensus       256 ~~L~~L~L~~n~l~~~~~~~l~~--~l~~~~~L~~L~Ls~n~i~~~-~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  332 (461)
T 1z7x_W          256 SRLRTLWIWECGITAKGCGDLCR--VLRAKESLKELSLAGNELGDE-GARLLCETLLEPGCQLESLWVKSCSFTAACCSH  332 (461)
T ss_dssp             CCCCEEECTTSCCCHHHHHHHHH--HHHHCTTCCEEECTTCCCHHH-HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             CCceEEECcCCCCCHHHHHHHHH--HHhhCCCcceEECCCCCCchH-HHHHHHHHhccCCccceeeEcCCCCCchHHHHH
Confidence            6899999999998854    455  667789999999999988643 2223322     357888  999988754    


Q ss_pred             CChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhhc-----CCCCCEEEeecccCCC
Q 041168          118 IPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEK-----LANLKVLHLGQVNTAS  169 (177)
Q Consensus       118 ~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~-----l~~L~~L~Ls~N~l~g  169 (177)
                      ++..+..+++|++|++++|  .+   ....+..+..     .++|++|++++|.+++
T Consensus       333 l~~~l~~~~~L~~L~Ls~n--~i---~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~  384 (461)
T 1z7x_W          333 FSSVLAQNRFLLELQISNN--RL---EDAGVRELCQGLGQPGSVLRVLWLADCDVSD  384 (461)
T ss_dssp             HHHHHHHCSSCCEEECCSS--BC---HHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred             HHHHHhhCCCccEEEccCC--cc---ccccHHHHHHHHcCCCCceEEEECCCCCCCh
Confidence            4566778899999999999  44   3333333332     6799999999999875

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.68  E-value=3.5e-09  Score=84.66  Aligned_cols=89  Identities=21%  Similarity=0.241  Sum_probs=39.0

Q ss_pred             cCCcEEEccCCCCCCCC---CCccccCCccccc--cccccCCCC----CChhhhCCCCCCEEeCCCCcCCcccCCCchhH
Q 041168           79 VHLEWLVLSNNHFNFSE---IPSEIKNLSRLTA--LSNPSFFGQ----IPAELLELSDLESLDLSFNNFHLKLQGPSLAN  149 (177)
Q Consensus        79 ~~L~~L~Ls~n~l~~~~---~p~~~~~l~~L~~--ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~  149 (177)
                      +.|++|+|++|.++...   ++..+...++|++  |++|.+...    ++..+...++|++|+|++|.|.-.. ...++.
T Consensus       155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g-~~~l~~  233 (372)
T 3un9_A          155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA-ALALAR  233 (372)
T ss_dssp             CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH-HHHHHH
T ss_pred             CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH-HHHHHH
Confidence            34555555555443210   1122234445555  555554321    1233444555566666555221000 002333


Q ss_pred             HhhcCCCCCEEEeecccCC
Q 041168          150 LAEKLANLKVLHLGQVNTA  168 (177)
Q Consensus       150 ~~~~l~~L~~L~Ls~N~l~  168 (177)
                      .+...++|++|+|++|.|+
T Consensus       234 ~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          234 AAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHCSSCCEEECTTSSCC
T ss_pred             HHHhCCCCCEEeccCCCCC
Confidence            4445566666666666654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.56  E-value=9.3e-09  Score=82.20  Aligned_cols=113  Identities=16%  Similarity=0.096  Sum_probs=76.6

Q ss_pred             CcEEEEEccCCccccccCCCcc-cccCcCCcEEEccCCCCCCCCCCccc-----cCCccccc--cccccCCC----CCCh
Q 041168           53 GHVIRLDLTSSCLYGSINSSSS-LFQLVHLEWLVLSNNHFNFSEIPSEI-----KNLSRLTA--LSNPSFFG----QIPA  120 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~p~~~-----~~l~~L~~--ls~n~l~~----~~p~  120 (177)
                      .+++.|++++|.++.....  . ...+++|+.|+|++|.++.. ....+     ...+.|++  |++|.+..    .++.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~--~l~~~L~~L~~L~Ls~n~l~~~-~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~  177 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLR--TLLPVFLRARKLGLQLNSLGPE-ACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLME  177 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHH--HTHHHHHTEEEEECCSSCCCHH-HHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHH--HHHHHHHhccHhhcCCCCCCHH-HHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHH
Confidence            4788899998888643322  2 23456888999999988642 22222     23567888  88998863    2344


Q ss_pred             hhhCCCCCCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCC
Q 041168          121 ELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAS  169 (177)
Q Consensus       121 ~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g  169 (177)
                      .+..+++|++|+|++|.|.-.+ ...++..+...++|++|+|++|.|+.
T Consensus       178 ~L~~~~~L~~L~Ls~N~l~~~g-~~~L~~~L~~~~~L~~L~Ls~N~i~~  225 (372)
T 3un9_A          178 GLAGNTSVTHLSLLHTGLGDEG-LELLAAQLDRNRQLQELNVAYNGAGD  225 (372)
T ss_dssp             HHHTCSSCCEEECTTSSCHHHH-HHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred             HHhcCCCcCEEeCCCCCCCcHH-HHHHHHHHhcCCCcCeEECCCCCCCH
Confidence            5577889999999999432100 01245667788899999999998874

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.46  E-value=2.3e-08  Score=83.52  Aligned_cols=91  Identities=15%  Similarity=0.051  Sum_probs=59.2

Q ss_pred             cccCcCCcEEEccCCC--CCCCCCCcccc-CCccccc--cccccCCC-CCChhhhCCCCCCEEeCCCCcCCcccCCCchh
Q 041168           75 LFQLVHLEWLVLSNNH--FNFSEIPSEIK-NLSRLTA--LSNPSFFG-QIPAELLELSDLESLDLSFNNFHLKLQGPSLA  148 (177)
Q Consensus        75 l~~l~~L~~L~Ls~n~--l~~~~~p~~~~-~l~~L~~--ls~n~l~~-~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p  148 (177)
                      +..+++|+.|+++++.  +++. .+..+. .+++|++  +++|++.+ .++..+..+++|++|++++|.|.    ...++
T Consensus       432 ~~~~~~L~~L~L~~~~~~l~~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~----~~~~~  506 (592)
T 3ogk_B          432 LIGCKKLRRFAFYLRQGGLTDL-GLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS----ERAIA  506 (592)
T ss_dssp             HHHCTTCCEEEEECCGGGCCHH-HHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCB----HHHHH
T ss_pred             HHhCCCCCEEEEecCCCCccHH-HHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCc----HHHHH
Confidence            4446666666665432  3322 222232 3677888  88888764 23445578899999999999432    12345


Q ss_pred             HHhhcCCCCCEEEeecccCCCC
Q 041168          149 NLAEKLANLKVLHLGQVNTAST  170 (177)
Q Consensus       149 ~~~~~l~~L~~L~Ls~N~l~g~  170 (177)
                      ..+..+++|++|+|++|++++.
T Consensus       507 ~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          507 AAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             HHHHHCSSCCEEEEESCBCCTT
T ss_pred             HHHHhcCccCeeECcCCcCCHH
Confidence            5567889999999999998865

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.45  E-value=1.8e-07  Score=73.14  Aligned_cols=99  Identities=14%  Similarity=0.056  Sum_probs=67.1

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCcccc-c--cccccCCCCCChhhhCCCCCC
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLT-A--LSNPSFFGQIPAELLELSDLE  129 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~-~--ls~n~l~~~~p~~~~~l~~L~  129 (177)
                      .+++.|++++|.++.....  .|.++.+|+.+++.+| +... -+..|..+.+|+ .  +.+ ++...-+.+|..+++|+
T Consensus       226 ~~L~~l~L~~n~i~~I~~~--aF~~~~~L~~l~l~~n-i~~I-~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~  300 (329)
T 3sb4_A          226 PNLVSLDISKTNATTIPDF--TFAQKKYLLKIKLPHN-LKTI-GQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLR  300 (329)
T ss_dssp             TTCCEEECTTBCCCEECTT--TTTTCTTCCEEECCTT-CCEE-CTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEE
T ss_pred             CCCeEEECCCCCcceecHh--hhhCCCCCCEEECCcc-ccee-hHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCC
Confidence            4678888888777754444  6777888888888776 5533 345677788787 6  555 56544556777888888


Q ss_pred             EEeCCCCcCCcccCCCchhHHhhcCCCCCEEE
Q 041168          130 SLDLSFNNFHLKLQGPSLANLAEKLANLKVLH  161 (177)
Q Consensus       130 ~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~  161 (177)
                      .++++.|  .+   ...-+..|..+++|+.|+
T Consensus       301 ~l~l~~n--~i---~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          301 YVLATGD--KI---TTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EEEECSS--CC---CEECTTTTCTTCCCCEEE
T ss_pred             EEEeCCC--cc---CccchhhhcCCcchhhhc
Confidence            8888777  33   233344677777887775

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.45  E-value=5.9e-08  Score=74.20  Aligned_cols=79  Identities=27%  Similarity=0.278  Sum_probs=54.7

Q ss_pred             ccCcCCcEEEccCCCCCCC-CCCccccCCccccc--cccccCCCCCChhhhCCC--CCCEEeCCCCcCCcccCCCchh--
Q 041168           76 FQLVHLEWLVLSNNHFNFS-EIPSEIKNLSRLTA--LSNPSFFGQIPAELLELS--DLESLDLSFNNFHLKLQGPSLA--  148 (177)
Q Consensus        76 ~~l~~L~~L~Ls~n~l~~~-~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~--~L~~L~Ls~N~~~l~~~~~~~p--  148 (177)
                      .+++.|+.|+|++|.+++. .+|..+..+++|+.  |++|++.+.  ..+..+.  +|++|+|++|+  +   .+.+|  
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Np--l---~~~~~~~  239 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNS--L---CDTFRDQ  239 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTST--T---GGGCSSH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCc--C---ccccCcc
Confidence            3577888999999988862 03455667888888  888888753  3344444  88888888884  4   33232  


Q ss_pred             -----HHhhcCCCCCEEE
Q 041168          149 -----NLAEKLANLKVLH  161 (177)
Q Consensus       149 -----~~~~~l~~L~~L~  161 (177)
                           ..+..+++|+.||
T Consensus       240 ~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          240 STYISAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHHHHHHCTTCCEES
T ss_pred             hhHHHHHHHHCcccCeEC
Confidence                 3467788888876

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.40  E-value=4.2e-08  Score=70.82  Aligned_cols=114  Identities=12%  Similarity=0.084  Sum_probs=81.6

Q ss_pred             CCcEEEEEccCC-ccccc----cCCCcccccCcCCcEEEccCCCCCCCC---CCccccCCccccc--cccccCCCC----
Q 041168           52 NGHVIRLDLTSS-CLYGS----INSSSSLFQLVHLEWLVLSNNHFNFSE---IPSEIKNLSRLTA--LSNPSFFGQ----  117 (177)
Q Consensus        52 ~~~l~~L~l~~n-~l~~~----~~~~~~l~~l~~L~~L~Ls~n~l~~~~---~p~~~~~l~~L~~--ls~n~l~~~----  117 (177)
                      ...+++|++++| .+...    +..  .+...++|++|+|++|.+....   +...+...+.|++  |++|.+...    
T Consensus        35 ~~~L~~L~L~~n~~i~~~g~~~l~~--~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~  112 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVPTLKACAE--ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA  112 (185)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHH--HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             CCCCCEEEecCCCCCCHHHHHHHHH--HHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence            368999999999 88643    233  4566789999999999997420   2234555678888  999998742    


Q ss_pred             CChhhhCCCCCCEEeC--CCCcCCcccCCCchhHHhhcCCCCCEEEeecccCC
Q 041168          118 IPAELLELSDLESLDL--SFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTA  168 (177)
Q Consensus       118 ~p~~~~~l~~L~~L~L--s~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~  168 (177)
                      +...+...++|++|+|  ++|.|.-++ ...+...+...++|++|+|++|.+.
T Consensus       113 l~~~L~~n~~L~~L~L~~~~N~i~~~g-~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          113 LVEALQSNTSLIELRIDNQSQPLGNNV-EMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHH-HHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHhCCCceEEEecCCCCCCCHHH-HHHHHHHHHhCCCcCEEeccCCCCC
Confidence            3456777889999999  889432100 0124566777899999999999874

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.20  E-value=5.9e-07  Score=74.96  Aligned_cols=79  Identities=13%  Similarity=0.114  Sum_probs=42.8

Q ss_pred             CcEEEEEccCCccccc----cCCCcccccCcCCcEEEccCCCCCCC---CCCccccCCccccc--cccccCCCCCChhhh
Q 041168           53 GHVIRLDLTSSCLYGS----INSSSSLFQLVHLEWLVLSNNHFNFS---EIPSEIKNLSRLTA--LSNPSFFGQIPAELL  123 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~----~~~~~~l~~l~~L~~L~Ls~n~l~~~---~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~  123 (177)
                      +++++|++++|.+++.    ++.  ....+++|++|++++|.+++.   .++..+..+++|++  +++|.+.+ +|..+.
T Consensus       164 ~~L~~L~L~~~~~~~~~~~~l~~--~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~  240 (592)
T 3ogk_B          164 RKIKTLLMEESSFSEKDGKWLHE--LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFK  240 (592)
T ss_dssp             TTCSEEECTTCEEECCCSHHHHH--HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHH
T ss_pred             CCCCEEECccccccCcchhHHHH--HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHh
Confidence            5677777777776543    222  234566777777777766521   02233345566666  66665542 344444


Q ss_pred             CCCCCCEEeCC
Q 041168          124 ELSDLESLDLS  134 (177)
Q Consensus       124 ~l~~L~~L~Ls  134 (177)
                      .+++|++|+++
T Consensus       241 ~~~~L~~L~l~  251 (592)
T 3ogk_B          241 AAANLEEFCGG  251 (592)
T ss_dssp             HCTTCCEEEEC
T ss_pred             hhhHHHhhccc
Confidence            44555555443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.16  E-value=1.6e-06  Score=66.30  Aligned_cols=75  Identities=23%  Similarity=0.319  Sum_probs=60.3

Q ss_pred             CcEEEEEccCCcccc--ccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCc--cccc--cccccCCCCCCh------
Q 041168           53 GHVIRLDLTSSCLYG--SINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLS--RLTA--LSNPSFFGQIPA------  120 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~--~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~--~L~~--ls~n~l~~~~p~------  120 (177)
                      ++|+.|+|++|.+++  .++.  .+..+++|+.|+|++|.+++  + ..+..+.  +|+.  |++|.+.+.+|.      
T Consensus       170 ~~L~~L~Ls~N~l~~l~~l~~--~~~~l~~L~~L~Ls~N~i~~--~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          170 PELLSLNLSNNRLYRLDDMSS--IVQKAPNLKILNLSGNELKS--E-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             TTCCEEECTTSCCCCCGGGTT--HHHHSTTCCEEECTTSCCCS--G-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             CCCCEEECCCCCCCCCccchh--HHhhCCCCCEEECCCCccCC--c-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            689999999999987  4455  66789999999999999985  3 3344444  7888  999999876662      


Q ss_pred             -hhhCCCCCCEEe
Q 041168          121 -ELLELSDLESLD  132 (177)
Q Consensus       121 -~~~~l~~L~~L~  132 (177)
                       .+..+++|+.||
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence             467899999986

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.11  E-value=3.6e-07  Score=76.24  Aligned_cols=109  Identities=18%  Similarity=0.164  Sum_probs=57.7

Q ss_pred             CcEEEEEccCCccccccCCCcccc-cCcCCcEEEccCC-CCCCCCCCccccCCccccc--cccccCCCCCChhhh----C
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLF-QLVHLEWLVLSNN-HFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELL----E  124 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~-~l~~L~~L~Ls~n-~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~----~  124 (177)
                      ++++.|+++++.+++....  .+. .+++|++|++++| .++...++..+..+++|++  +++|.+.+..+..+.    .
T Consensus       105 ~~L~~L~L~~~~~~~~~~~--~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~  182 (594)
T 2p1m_B          105 TWLEEIRLKRMVVTDDCLE--LIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT  182 (594)
T ss_dssp             TTCCEEEEESCBCCHHHHH--HHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred             CCCCeEEeeCcEEcHHHHH--HHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence            4677777777776654444  443 4667777777766 3332102223335666666  666665543333332    4


Q ss_pred             CCCCCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecc
Q 041168          125 LSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQV  165 (177)
Q Consensus       125 l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N  165 (177)
                      +++|++|++++|.-.+  ....++..+..+++|++|++++|
T Consensus       183 ~~~L~~L~l~~~~~~~--~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          183 YTSLVSLNISCLASEV--SFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             CCCCCEEECTTCCSCC--CHHHHHHHHHHCTTCCEEECCTT
T ss_pred             CCcCcEEEecccCCcC--CHHHHHHHHHhCCCCcEEecCCC
Confidence            5567777776662001  00112233344566666666665

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.00  E-value=4.6e-07  Score=75.59  Aligned_cols=86  Identities=15%  Similarity=0.108  Sum_probs=45.5

Q ss_pred             ccCcCCcEEEccCCCCCCCCCCccccC-Cccccc--cccccCCCCCChhh-hCCCCCCEEeCCCCcCCcccCCCc-hhHH
Q 041168           76 FQLVHLEWLVLSNNHFNFSEIPSEIKN-LSRLTA--LSNPSFFGQIPAEL-LELSDLESLDLSFNNFHLKLQGPS-LANL  150 (177)
Q Consensus        76 ~~l~~L~~L~Ls~n~l~~~~~p~~~~~-l~~L~~--ls~n~l~~~~p~~~-~~l~~L~~L~Ls~N~~~l~~~~~~-~p~~  150 (177)
                      ..+++|+.|++++ .++.. ....+.. +++|++  +++|.+.+.....+ ..+++|++|+|++|.  +   +.. +...
T Consensus       429 ~~~~~L~~L~L~~-~l~~~-~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~--~---~~~~~~~~  501 (594)
T 2p1m_B          429 EHCKDLRRLSLSG-LLTDK-VFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCP--F---GDKALLAN  501 (594)
T ss_dssp             HHCTTCCEEECCS-SCCHH-HHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCS--C---CHHHHHHT
T ss_pred             hhCCCccEEeecC-cccHH-HHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCC--C---cHHHHHHH
Confidence            3445555565544 33322 2223332 556666  66666653333333 456777777777773  2   222 2223


Q ss_pred             hhcCCCCCEEEeecccCC
Q 041168          151 AEKLANLKVLHLGQVNTA  168 (177)
Q Consensus       151 ~~~l~~L~~L~Ls~N~l~  168 (177)
                      ...+++|++|++++|+++
T Consensus       502 ~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          502 ASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             GGGGGGSSEEEEESSCCB
T ss_pred             HHhCCCCCEEeeeCCCCC
Confidence            345677777777777663

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.99  E-value=5.5e-06  Score=64.58  Aligned_cols=84  Identities=12%  Similarity=-0.011  Sum_probs=68.9

Q ss_pred             CcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCC-EEeCCCCcCCcccCCCchhHHhhcC
Q 041168           78 LVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLE-SLDLSFNNFHLKLQGPSLANLAEKL  154 (177)
Q Consensus        78 l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~-~L~Ls~N~~~l~~~~~~~p~~~~~l  154 (177)
                      ++.|+.++|++|.++.. -...|..+.+|+.  +.+| +...-+.+|..+.+|+ .+++..+   +   ...-+..|..+
T Consensus       225 ~~~L~~l~L~~n~i~~I-~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~~---l---~~I~~~aF~~c  296 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTI-PDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPAS---V---TAIEFGAFMGC  296 (329)
T ss_dssp             CTTCCEEECTTBCCCEE-CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECTT---C---CEECTTTTTTC
T ss_pred             cCCCeEEECCCCCccee-cHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEccc---c---eEEchhhhhCC
Confidence            78999999999999853 3467899999999  8777 7655667899999999 9999885   2   23335679999


Q ss_pred             CCCCEEEeecccCCC
Q 041168          155 ANLKVLHLGQVNTAS  169 (177)
Q Consensus       155 ~~L~~L~Ls~N~l~g  169 (177)
                      ++|+.|+++.|.+..
T Consensus       297 ~~L~~l~l~~n~i~~  311 (329)
T 3sb4_A          297 DNLRYVLATGDKITT  311 (329)
T ss_dssp             TTEEEEEECSSCCCE
T ss_pred             ccCCEEEeCCCccCc
Confidence            999999999998874

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.85  E-value=2.4e-06  Score=68.02  Aligned_cols=62  Identities=19%  Similarity=0.250  Sum_probs=37.5

Q ss_pred             CCccccc--cccccCCCCCChhhh---CCCCCCEEeCCCCcCCcccCCC----chhHHhhcCCCCCEEEeecccCC
Q 041168          102 NLSRLTA--LSNPSFFGQIPAELL---ELSDLESLDLSFNNFHLKLQGP----SLANLAEKLANLKVLHLGQVNTA  168 (177)
Q Consensus       102 ~l~~L~~--ls~n~l~~~~p~~~~---~l~~L~~L~Ls~N~~~l~~~~~----~~p~~~~~l~~L~~L~Ls~N~l~  168 (177)
                      .+++|++  |.+|.+....+..+.   .+++|++|+|+.|.  +   ..    .++..+..+++|+.|+|+.|.|+
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~--L---~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV--L---TDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC--C---BHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC--C---ChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            3567777  666666532222332   46678888888773  3   22    13333456678888888888765

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.83  E-value=3.8e-06  Score=60.45  Aligned_cols=95  Identities=14%  Similarity=0.022  Sum_probs=68.0

Q ss_pred             ccccCcCCcEEEccCC-CCCCCC---CCccccCCccccc--cccccCCCC----CChhhhCCCCCCEEeCCCCcCCcccC
Q 041168           74 SLFQLVHLEWLVLSNN-HFNFSE---IPSEIKNLSRLTA--LSNPSFFGQ----IPAELLELSDLESLDLSFNNFHLKLQ  143 (177)
Q Consensus        74 ~l~~l~~L~~L~Ls~n-~l~~~~---~p~~~~~l~~L~~--ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~~~l~~~  143 (177)
                      .+...+.|++|+|++| .+....   +...+...++|++  |++|.+...    +...+...++|++|+|++|.|.-++ 
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g-  109 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG-  109 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH-
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH-
Confidence            4567789999999999 886320   2344566788988  999998632    3345566789999999999532100 


Q ss_pred             CCchhHHhhcCCCCCEEEe--ecccCCC
Q 041168          144 GPSLANLAEKLANLKVLHL--GQVNTAS  169 (177)
Q Consensus       144 ~~~~p~~~~~l~~L~~L~L--s~N~l~g  169 (177)
                      ...+...+...++|++|+|  ++|.|..
T Consensus       110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~  137 (185)
T 1io0_A          110 ILALVEALQSNTSLIELRIDNQSQPLGN  137 (185)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred             HHHHHHHHHhCCCceEEEecCCCCCCCH
Confidence            0124566788899999999  8898864

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.78  E-value=1.1e-05  Score=57.74  Aligned_cols=36  Identities=22%  Similarity=0.225  Sum_probs=25.0

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCC
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNH   90 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~   90 (177)
                      -+|+.||++++.++..--.  .+..+++|+.|+|++|.
T Consensus        61 ~~L~~LDLs~~~Itd~GL~--~L~~~~~L~~L~L~~C~   96 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFD--HMEGLQYVEKIRLCKCH   96 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGG--GGTTCSCCCEEEEESCT
T ss_pred             ceEeEEeCcCCCccHHHHH--HhcCCCCCCEEEeCCCC
Confidence            3577788877777654444  56677777777777775

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.61  E-value=1.3e-05  Score=57.32  Aligned_cols=83  Identities=11%  Similarity=0.066  Sum_probs=60.0

Q ss_pred             cCCcEEEccCCCCCCCCCCccccCCccccc--ccccc-CCCCCChhhhCC----CCCCEEeCCCCcCCcccCCCchhHHh
Q 041168           79 VHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPS-FFGQIPAELLEL----SDLESLDLSFNNFHLKLQGPSLANLA  151 (177)
Q Consensus        79 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~-l~~~~p~~~~~l----~~L~~L~Ls~N~~~l~~~~~~~p~~~  151 (177)
                      ..|+.|+++++.++.. --..+..+++|++  |++|. ++..--..+..+    ++|++|+|+++. .+   +..=-..+
T Consensus        61 ~~L~~LDLs~~~Itd~-GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~-~I---TD~Gl~~L  135 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSI-GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCG-NV---TDKGIIAL  135 (176)
T ss_dssp             CCEEEEEEESCCCCGG-GGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCT-TC---CHHHHHHG
T ss_pred             ceEeEEeCcCCCccHH-HHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCC-cC---CHHHHHHH
Confidence            4799999999998854 3456788999999  88885 543222335554    479999999983 23   32223457


Q ss_pred             hcCCCCCEEEeeccc
Q 041168          152 EKLANLKVLHLGQVN  166 (177)
Q Consensus       152 ~~l~~L~~L~Ls~N~  166 (177)
                      .++++|++|+|+++.
T Consensus       136 ~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          136 HHFRNLKYLFLSDLP  150 (176)
T ss_dssp             GGCTTCCEEEEESCT
T ss_pred             hcCCCCCEEECCCCC
Confidence            789999999999985

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.59  E-value=0.00011  Score=59.12  Aligned_cols=103  Identities=11%  Similarity=0.080  Sum_probs=66.2

Q ss_pred             cEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCC-----CCCCCccccCCccccc--cccccCCCCCChhhhCCC
Q 041168           54 HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFN-----FSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELS  126 (177)
Q Consensus        54 ~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~-----~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~  126 (177)
                      +++.+.+. +.++..-..  .|.+++.|+.+.+.+|.+.     .. -+..|..+++|+.  +. +.+...-..+|..++
T Consensus       249 ~L~~i~lp-~~i~~I~~~--aF~~c~~L~~l~l~~~~~~~~~~~~I-~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~  323 (401)
T 4fdw_A          249 GITTVKLP-NGVTNIASR--AFYYCPELAEVTTYGSTFNDDPEAMI-HPYCLEGCPKLARFEIP-ESIRILGQGLLGGNR  323 (401)
T ss_dssp             CCSEEEEE-TTCCEECTT--TTTTCTTCCEEEEESSCCCCCTTCEE-CTTTTTTCTTCCEECCC-TTCCEECTTTTTTCC
T ss_pred             CccEEEeC-CCccEEChh--HhhCCCCCCEEEeCCccccCCcccEE-CHHHhhCCccCCeEEeC-CceEEEhhhhhcCCC
Confidence            34455553 334433344  6777888888888777654     12 2356777788887  55 445544456778888


Q ss_pred             CCCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCC
Q 041168          127 DLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTA  168 (177)
Q Consensus       127 ~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~  168 (177)
                      +|+.+.|..|   +   ...-...|..+ +|+.|++.+|.+.
T Consensus       324 ~L~~l~lp~~---l---~~I~~~aF~~~-~L~~l~l~~n~~~  358 (401)
T 4fdw_A          324 KVTQLTIPAN---V---TQINFSAFNNT-GIKEVKVEGTTPP  358 (401)
T ss_dssp             SCCEEEECTT---C---CEECTTSSSSS-CCCEEEECCSSCC
T ss_pred             CccEEEECcc---c---cEEcHHhCCCC-CCCEEEEcCCCCc
Confidence            8888888665   2   22234557777 8999999888765

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.24  E-value=0.00017  Score=57.22  Aligned_cols=106  Identities=13%  Similarity=0.081  Sum_probs=55.5

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCcccc--CCccccc--ccc--ccCCCC-----CChh
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIK--NLSRLTA--LSN--PSFFGQ-----IPAE  121 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~--~l~~L~~--ls~--n~l~~~-----~p~~  121 (177)
                      ++|+.|+++++.-. .++   .+ .+++|+.|++..+.+... ....+.  .+++|++  |+.  |...+.     +...
T Consensus       172 P~L~~L~L~g~~~l-~l~---~~-~~~~L~~L~L~~~~l~~~-~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~  245 (362)
T 2ra8_A          172 PLLNNLKIKGTNNL-SIG---KK-PRPNLKSLEIISGGLPDS-VVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL  245 (362)
T ss_dssp             TTCCEEEEECCBTC-BCC---SC-BCTTCSEEEEECSBCCHH-HHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred             CCCcEEEEeCCCCc-eec---cc-cCCCCcEEEEecCCCChH-HHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence            56667776665211 122   22 256677777766665422 112222  4666666  432  221111     1112


Q ss_pred             h--hCCCCCCEEeCCCCcCCcccCCCchhHHhh---cCCCCCEEEeecccCCC
Q 041168          122 L--LELSDLESLDLSFNNFHLKLQGPSLANLAE---KLANLKVLHLGQVNTAS  169 (177)
Q Consensus       122 ~--~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~---~l~~L~~L~Ls~N~l~g  169 (177)
                      +  ..+++|++|+|.+|  .+   ....+..+.   .+++|++|+|+.|.+.+
T Consensus       246 l~~~~~p~Lr~L~L~~~--~i---~~~~~~~la~a~~~~~L~~LdLs~n~L~d  293 (362)
T 2ra8_A          246 FSKDRFPNLKWLGIVDA--EE---QNVVVEMFLESDILPQLETMDISAGVLTD  293 (362)
T ss_dssp             SCTTTCTTCCEEEEESC--TT---HHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred             HhcCCCCCcCEEeCCCC--CC---chHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence            2  24678888888877  33   222233333   46788899998888764

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.87  E-value=0.0011  Score=53.28  Aligned_cols=104  Identities=5%  Similarity=-0.023  Sum_probs=75.5

Q ss_pred             CcEEEEEccCCccc-----cccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCC
Q 041168           53 GHVIRLDLTSSCLY-----GSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLEL  125 (177)
Q Consensus        53 ~~l~~L~l~~n~l~-----~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l  125 (177)
                      .+|+.+++.++.+.     .....  .|.++++|+.+.+.. .++.. -...|..+.+|+.  +..+ +...-..+|..+
T Consensus       271 ~~L~~l~l~~~~~~~~~~~~I~~~--aF~~c~~L~~l~l~~-~i~~I-~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~  345 (401)
T 4fdw_A          271 PELAEVTTYGSTFNDDPEAMIHPY--CLEGCPKLARFEIPE-SIRIL-GQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT  345 (401)
T ss_dssp             TTCCEEEEESSCCCCCTTCEECTT--TTTTCTTCCEECCCT-TCCEE-CTTTTTTCCSCCEEEECTT-CCEECTTSSSSS
T ss_pred             CCCCEEEeCCccccCCcccEECHH--HhhCCccCCeEEeCC-ceEEE-hhhhhcCCCCccEEEECcc-ccEEcHHhCCCC
Confidence            57899999887654     23344  789999999999984 46643 3467888999999  6444 654556788899


Q ss_pred             CCCCEEeCCCCcCCcccCCCchhHHhhcCC-CCCEEEeecccC
Q 041168          126 SDLESLDLSFNNFHLKLQGPSLANLAEKLA-NLKVLHLGQVNT  167 (177)
Q Consensus       126 ~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~-~L~~L~Ls~N~l  167 (177)
                       +|+.+++.+|  ..   .......|..++ +++.|++..+.+
T Consensus       346 -~L~~l~l~~n--~~---~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          346 -GIKEVKVEGT--TP---PQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             -CCCEEEECCS--SC---CBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             -CCCEEEEcCC--CC---cccccccccCCCCCccEEEeCHHHH
Confidence             9999999999  33   233344566664 788999887654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.53  E-value=0.0044  Score=41.76  Aligned_cols=54  Identities=19%  Similarity=0.223  Sum_probs=38.6

Q ss_pred             cEEEccCCCCC-CCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeCCCCcC
Q 041168           82 EWLVLSNNHFN-FSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFNNF  138 (177)
Q Consensus        82 ~~L~Ls~n~l~-~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~  138 (177)
                      ..++.+++.++ .. +|..+.  .+|++  |++|+|....+..|..+++|++|+|++|++
T Consensus        11 ~~v~Cs~~~L~~~~-vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           11 TLVDCGRRGLTWAS-LPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TEEECCSSCCCTTT-SCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CEEEeCCCCCcccc-CCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            46788888876 12 665433  34666  889988865556678888899999998854

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.27  E-value=0.0012  Score=47.95  Aligned_cols=110  Identities=11%  Similarity=0.092  Sum_probs=73.0

Q ss_pred             CcEEEEEccCC-ccccc----cCCCcccccCcCCcEEEccCCCCCCC---CCCccccCCccccc--cccccCCCC----C
Q 041168           53 GHVIRLDLTSS-CLYGS----INSSSSLFQLVHLEWLVLSNNHFNFS---EIPSEIKNLSRLTA--LSNPSFFGQ----I  118 (177)
Q Consensus        53 ~~l~~L~l~~n-~l~~~----~~~~~~l~~l~~L~~L~Ls~n~l~~~---~~p~~~~~l~~L~~--ls~n~l~~~----~  118 (177)
                      ..++.|+|++| .+...    +..  .+..-++|+.|+|++|.|...   .+...+..-+.|++  |++|.|...    +
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~--aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIE--AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHH--HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCccEEECCCCCCCCHHHHHHHHH--HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence            67999999985 77532    223  455567899999999998732   02233444567887  899988632    2


Q ss_pred             ChhhhCCCCCCEEeCCCCcC-CcccCCC----chhHHhhcCCCCCEEEeecccC
Q 041168          119 PAELLELSDLESLDLSFNNF-HLKLQGP----SLANLAEKLANLKVLHLGQVNT  167 (177)
Q Consensus       119 p~~~~~l~~L~~L~Ls~N~~-~l~~~~~----~~p~~~~~l~~L~~L~Ls~N~l  167 (177)
                      -+.+..-+.|++|+|++|.. .+   ..    .+...+..-++|+.|+++.|.+
T Consensus       119 a~aL~~N~tL~~L~L~n~~~~~i---g~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          119 LRSTLVTQSIVEFKADNQRQSVL---GNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCC---CHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHhhCCceeEEECCCCcCcCc---CHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            23455567799999986521 12   11    2456677788999999987754

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.12  E-value=0.014  Score=39.18  Aligned_cols=54  Identities=22%  Similarity=0.252  Sum_probs=40.5

Q ss_pred             EEEccCCccc-cccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCC
Q 041168           57 RLDLTSSCLY-GSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFF  115 (177)
Q Consensus        57 ~L~l~~n~l~-~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~  115 (177)
                      .++.++++++ ..+|.  .+  .+.|+.|+|++|.|+.. -+..|..+++|++  |.+|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~--~l--p~~l~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPT--AF--PVDTTELVLTGNNLTAL-PPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCS--CC--CTTCSEEECTTSCCSSC-CTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCC--CC--CcCCCEEECCCCcCCcc-ChhhhhhccccCEEEecCCCee
Confidence            6777888876 24554  33  34799999999999954 3466788999998  8998775

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=95.75  E-value=0.033  Score=44.06  Aligned_cols=84  Identities=8%  Similarity=0.052  Sum_probs=49.3

Q ss_pred             ccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHh
Q 041168           74 SLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLA  151 (177)
Q Consensus        74 ~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~  151 (177)
                      .+.++..|+.+.+.. .++.. -...|..+.+|+.  +..+ +...-..+|..+.+|+.+.+..+   +   ...-...|
T Consensus       283 aF~~c~~L~~i~l~~-~i~~I-~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s---v---~~I~~~aF  353 (394)
T 4gt6_A          283 AFMNCPALQDIEFSS-RITEL-PESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS---V---TKIPESAF  353 (394)
T ss_dssp             TTTTCTTCCEEECCT-TCCEE-CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT---C---CBCCGGGG
T ss_pred             ccccccccccccCCC-ccccc-CceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc---c---CEEhHhHh
Confidence            455666666666643 33322 2345666777777  4432 44333456777778888777555   2   22223557


Q ss_pred             hcCCCCCEEEeeccc
Q 041168          152 EKLANLKVLHLGQVN  166 (177)
Q Consensus       152 ~~l~~L~~L~Ls~N~  166 (177)
                      .++++|+.+++.++.
T Consensus       354 ~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          354 SNCTALNNIEYSGSR  368 (394)
T ss_dssp             TTCTTCCEEEESSCH
T ss_pred             hCCCCCCEEEECCce
Confidence            778888888877654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.71  E-value=0.015  Score=45.71  Aligned_cols=101  Identities=13%  Similarity=0.044  Sum_probs=58.6

Q ss_pred             cEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEE
Q 041168           54 HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESL  131 (177)
Q Consensus        54 ~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L  131 (177)
                      .++.+.+..+ ++..-..  .+.++..|+.+.+..+ +... -...|..+.+|+.  +.++.+...-..+|..+.+|+.+
T Consensus       241 ~L~~i~lp~~-v~~I~~~--aF~~~~~l~~i~l~~~-i~~i-~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i  315 (379)
T 4h09_A          241 ALDEIAIPKN-VTSIGSF--LLQNCTALKTLNFYAK-VKTV-PYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSV  315 (379)
T ss_dssp             SCCEEEECTT-CCEECTT--TTTTCTTCCEEEECCC-CSEE-CTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEE
T ss_pred             cceEEEcCCC-ccEeCcc--ccceeehhcccccccc-ceec-cccccccccccccccccccccceehhhhhcCCCCCCEE
Confidence            3444544433 3322223  4556666777766543 3311 2245677778877  66666664445677888888888


Q ss_pred             eCCCCcCCcccCCCchhHHhhcCCCCCEEEeecc
Q 041168          132 DLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQV  165 (177)
Q Consensus       132 ~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N  165 (177)
                      .|..+   +   ...-...|.++.+|+.+.+..+
T Consensus       316 ~lp~~---l---~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          316 TLPTA---L---KTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             ECCTT---C---CEECTTTTTTCTTCCCCCCCTT
T ss_pred             EcCcc---c---cEEHHHHhhCCCCCCEEEECCc
Confidence            88655   2   1112345777788887776543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=95.66  E-value=0.0081  Score=47.67  Aligned_cols=83  Identities=16%  Similarity=0.136  Sum_probs=59.7

Q ss_pred             ccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHh
Q 041168           74 SLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLA  151 (177)
Q Consensus        74 ~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~  151 (177)
                      .+..+..|+.+.+..+ ++.. -...|..+.+|+.  +.. .+...-..+|..+.+|+.+++..+   +   ...-...|
T Consensus       292 ~F~~~~~L~~i~l~~~-i~~I-~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~---l---~~I~~~aF  362 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLDS-VKFI-GEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS---L---RKIGANAF  362 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCEE-CTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT---C---CEECTTTB
T ss_pred             cccccccccccccccc-ccee-chhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc---c---cEehHHHh
Confidence            5777889999988765 4422 3466888888988  643 355344567889999999999776   2   22224568


Q ss_pred             hcCCCCCEEEeecc
Q 041168          152 EKLANLKVLHLGQV  165 (177)
Q Consensus       152 ~~l~~L~~L~Ls~N  165 (177)
                      ..+++|+.+++..+
T Consensus       363 ~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          363 QGCINLKKVELPKR  376 (394)
T ss_dssp             TTCTTCCEEEEEGG
T ss_pred             hCCCCCCEEEECCC
Confidence            89999999999765

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=95.49  E-value=0.024  Score=44.87  Aligned_cols=100  Identities=9%  Similarity=0.072  Sum_probs=61.4

Q ss_pred             cEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEE
Q 041168           54 HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESL  131 (177)
Q Consensus        54 ~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L  131 (177)
                      .++.+.+. +.++.....  .|.++.+|+.+.|..+ ++.. -...|..+.+|+.  +..+ +...-..+|..+.+|+.+
T Consensus       289 ~L~~i~l~-~~i~~I~~~--aF~~c~~L~~i~lp~~-v~~I-~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i  362 (394)
T 4gt6_A          289 ALQDIEFS-SRITELPES--VFAGCISLKSIDIPEG-ITQI-LDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNI  362 (394)
T ss_dssp             TCCEEECC-TTCCEECTT--TTTTCTTCCEEECCTT-CCEE-CTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEE
T ss_pred             ccccccCC-CcccccCce--eecCCCCcCEEEeCCc-ccEe-hHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEE
Confidence            44555554 234433334  7888999999999764 5432 3467889999999  6543 554445689999999999


Q ss_pred             eCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccC
Q 041168          132 DLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNT  167 (177)
Q Consensus       132 ~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l  167 (177)
                      ++.++.  .      .-..+.....|+.+.+..|.+
T Consensus       363 ~~~~~~--~------~~~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          363 EYSGSR--S------QWNAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             EESSCH--H------HHHTCBCCCCC----------
T ss_pred             EECCce--e------ehhhhhccCCCCEEEeCCCCE
Confidence            998882  2      124566778899998877754

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.28  E-value=0.006  Score=44.27  Aligned_cols=90  Identities=11%  Similarity=0.029  Sum_probs=60.2

Q ss_pred             cccCcCCcEEEccCC-CCCCCC---CCccccCCccccc--cccccCCC----CCChhhhCCCCCCEEeCCCCcCCcccCC
Q 041168           75 LFQLVHLEWLVLSNN-HFNFSE---IPSEIKNLSRLTA--LSNPSFFG----QIPAELLELSDLESLDLSFNNFHLKLQG  144 (177)
Q Consensus        75 l~~l~~L~~L~Ls~n-~l~~~~---~p~~~~~l~~L~~--ls~n~l~~----~~p~~~~~l~~L~~L~Ls~N~~~l~~~~  144 (177)
                      +.+-+.|++|+|++| .|....   +-..+..-+.|+.  |++|.+..    .+...+..-+.|++|+|+.|.|.-.+ .
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G-a  115 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL-L  115 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH-H
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH-H
Confidence            345578999999986 775210   2234555677888  99999863    23344556688999999999543200 0


Q ss_pred             CchhHHhhcCCCCCEEEeecc
Q 041168          145 PSLANLAEKLANLKVLHLGQV  165 (177)
Q Consensus       145 ~~~p~~~~~l~~L~~L~Ls~N  165 (177)
                      ..+.+.+..-+.|++|+|++|
T Consensus       116 ~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          116 ARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHHhhCCceeEEECCCC
Confidence            124455667788999999875

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=94.44  E-value=0.064  Score=42.39  Aligned_cols=98  Identities=13%  Similarity=0.054  Sum_probs=56.1

Q ss_pred             cEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEE
Q 041168           54 HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESL  131 (177)
Q Consensus        54 ~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L  131 (177)
                      .++.+.+..+... ....  .+..+..++.+......+.    ...|..+.+|+.  +.. .+...-..+|..+.+|+.+
T Consensus       254 ~l~~~~~~~~~~~-i~~~--~F~~~~~l~~~~~~~~~i~----~~~F~~~~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i  325 (394)
T 4fs7_A          254 DLESISIQNNKLR-IGGS--LFYNCSGLKKVIYGSVIVP----EKTFYGCSSLTEVKLLD-SVKFIGEEAFESCTSLVSI  325 (394)
T ss_dssp             SCCEEEECCTTCE-ECSC--TTTTCTTCCEEEECSSEEC----TTTTTTCTTCCEEEECT-TCCEECTTTTTTCTTCCEE
T ss_pred             cceeEEcCCCcce-eecc--ccccccccceeccCceeec----ccccccccccccccccc-ccceechhhhcCCCCCCEE
Confidence            3444555444322 2233  5666677777766554432    235666677777  433 3443334567778888888


Q ss_pred             eCCCCcCCcccCCCchhHHhhcCCCCCEEEeecc
Q 041168          132 DLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQV  165 (177)
Q Consensus       132 ~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N  165 (177)
                      +|..+   +   ...-...|..+.+|+.+.+..+
T Consensus       326 ~lp~~---v---~~I~~~aF~~c~~L~~i~lp~~  353 (394)
T 4fs7_A          326 DLPYL---V---EEIGKRSFRGCTSLSNINFPLS  353 (394)
T ss_dssp             CCCTT---C---CEECTTTTTTCTTCCEECCCTT
T ss_pred             EeCCc---c---cEEhHHhccCCCCCCEEEECcc
Confidence            88655   2   1222345777888888877665

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=92.67  E-value=0.26  Score=38.46  Aligned_cols=84  Identities=10%  Similarity=0.037  Sum_probs=54.5

Q ss_pred             ccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHh
Q 041168           74 SLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLA  151 (177)
Q Consensus        74 ~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~  151 (177)
                      .+..+..|+.+.+..+ ++.. -...|..+..|+.  +. +.+...-...|..+.+|+.+.+.++.  +   ...-...|
T Consensus       235 ~f~~~~~L~~i~lp~~-v~~I-~~~aF~~~~~l~~i~l~-~~i~~i~~~aF~~c~~L~~i~l~~~~--i---~~I~~~aF  306 (379)
T 4h09_A          235 AFYGMKALDEIAIPKN-VTSI-GSFLLQNCTALKTLNFY-AKVKTVPYLLCSGCSNLTKVVMDNSA--I---ETLEPRVF  306 (379)
T ss_dssp             TTTTCSSCCEEEECTT-CCEE-CTTTTTTCTTCCEEEEC-CCCSEECTTTTTTCTTCCEEEECCTT--C---CEECTTTT
T ss_pred             cccCCccceEEEcCCC-ccEe-Cccccceeehhcccccc-ccceeccccccccccccccccccccc--c---ceehhhhh
Confidence            4566677777777654 3322 2345666777777  43 33443334577889999999998773  3   22224568


Q ss_pred             hcCCCCCEEEeecc
Q 041168          152 EKLANLKVLHLGQV  165 (177)
Q Consensus       152 ~~l~~L~~L~Ls~N  165 (177)
                      ..+.+|+.+.|..+
T Consensus       307 ~~c~~L~~i~lp~~  320 (379)
T 4h09_A          307 MDCVKLSSVTLPTA  320 (379)
T ss_dssp             TTCTTCCEEECCTT
T ss_pred             cCCCCCCEEEcCcc
Confidence            88999999998654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	177
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.002
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-05

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 55.1 bits (131), Expect = 4e-10
 Identities = 32/110 (29%), Positives = 46/110 (41%), Gaps = 18/110 (16%)

Query: 1   RSALLQFKQSLTVVQCSFDDYPSAYPKVASWSQEEENRDCC--LWDGIKCNEDNG--HVI 56
           + ALLQ K+ L          P+    ++SW       DCC   W G+ C+ D     V 
Sbjct: 8   KQALLQIKKDLG--------NPTT---LSSWL---PTTDCCNRTWLGVLCDTDTQTYRVN 53

Query: 57  RLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRL 106
            LDL+   L       SSL  L +L +L +   +     IP  I  L++L
Sbjct: 54  NLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 37.4 bits (85), Expect = 4e-04
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 6/54 (11%)

Query: 109 LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHL 162
           L N   +G +P  L +L  L SL++SFNN   ++  P   N    L    V   
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI--PQGGN----LQRFDVSAY 298

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 35.5 bits (80), Expect = 0.002
 Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 7/64 (10%)

Query: 86  LSNNHFNFSEIPSEIKNLSRLTAL--SNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQ 143
           L NN      +P  +  L  L +L  S  +  G+IP +   L   +    + N     L 
Sbjct: 251 LRNNRIY-GTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKC---LC 305

Query: 144 GPSL 147
           G  L
Sbjct: 306 GSPL 309

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 6e-05
 Identities = 23/134 (17%), Positives = 46/134 (34%), Gaps = 11/134 (8%)

Query: 5   LQFKQSLTVVQCSFDDYPSAYPKVASWSQEEENRDCCLWDGIKCNEDNGHVIRLDLTSSC 64
           L     LT ++   +   +  P     +      +    + I    +  ++  L L    
Sbjct: 259 LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLY--- 315

Query: 65  LYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTAL--SNPSFFGQIPAEL 122
            + +I+  S +  L  L+ L  +NN        S + NL+ +  L   +       P  L
Sbjct: 316 -FNNISDISPVSSLTKLQRLFFANNKV---SDVSSLANLTNINWLSAGHNQISDLTP--L 369

Query: 123 LELSDLESLDLSFN 136
             L+ +  L L+  
Sbjct: 370 ANLTRITQLGLNDQ 383

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	177
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.94
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.68
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.57
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.5
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.46
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.46
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.45
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.44
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.41
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.34
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.28
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.24
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.2
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.19
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.18
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.07
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.06
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.06
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.03
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.01
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.99
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.97
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.93
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.89
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.83
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.83
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.69
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.66
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.66
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.39
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.28
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.13
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.05
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.01
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.97
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	97.86
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.77
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.73
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.55
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.9
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.52
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	92.75

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.94  E-value=3.7e-27  Score=182.51  Aligned_cols=154  Identities=31%  Similarity=0.505  Sum_probs=137.6

Q ss_pred             ChHHHHHhhhCccCCCCCCCCCCCCCCCCCCCCCCCCCCCC--ccceEEEcCC--CCcEEEEEccCCcccc--ccCCCcc
Q 041168            1 RSALLQFKQSLTVVQCSFDDYPSAYPKVASWSQEEENRDCC--LWDGIKCNED--NGHVIRLDLTSSCLYG--SINSSSS   74 (177)
Q Consensus         1 ~~~l~~~k~~~~~~~~~~~~~~~~~~~l~~W~~~~~~~~~C--~w~gv~c~~~--~~~l~~L~l~~n~l~~--~~~~~~~   74 (177)
                      |+||++||+++.++.           .+.+|.   .+++||  .|.||+|+..  ..+|+.|+++++.+.+  .+|.  .
T Consensus         8 ~~aLl~~k~~~~~~~-----------~l~sW~---~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~--~   71 (313)
T d1ogqa_           8 KQALLQIKKDLGNPT-----------TLSSWL---PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPS--S   71 (313)
T ss_dssp             HHHHHHHHHHTTCCG-----------GGTTCC---TTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCG--G
T ss_pred             HHHHHHHHHHCCCCC-----------cCCCCC---CCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCCh--H
Confidence            589999999998764           689998   678999  5999999864  3489999999999987  4677  8


Q ss_pred             cccCcCCcEEEccC-CCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHh
Q 041168           75 LFQLVHLEWLVLSN-NHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLA  151 (177)
Q Consensus        75 l~~l~~L~~L~Ls~-n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~  151 (177)
                      +.++++|++|+|++ |.+++. +|..|+.+++|++  |++|++.+..+..+..+..|++++++.|  .+   ...+|..+
T Consensus        72 l~~L~~L~~L~Ls~~N~l~g~-iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N--~~---~~~~p~~l  145 (313)
T d1ogqa_          72 LANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN--AL---SGTLPPSI  145 (313)
T ss_dssp             GGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSS--EE---ESCCCGGG
T ss_pred             HhcCccccccccccccccccc-cccccccccccchhhhccccccccccccccchhhhcccccccc--cc---cccCchhh
Confidence            99999999999986 899988 9999999999999  9999999888888999999999999999  55   57788999


Q ss_pred             hcCCCCCEEEeecccCCCCCCcccc
Q 041168          152 EKLANLKVLHLGQVNTASTVPYALA  176 (177)
Q Consensus       152 ~~l~~L~~L~Ls~N~l~g~~p~~l~  176 (177)
                      ..+++|+++++++|.+.|.+|..++
T Consensus       146 ~~l~~L~~l~l~~n~l~~~ip~~~~  170 (313)
T d1ogqa_         146 SSLPNLVGITFDGNRISGAIPDSYG  170 (313)
T ss_dssp             GGCTTCCEEECCSSCCEEECCGGGG
T ss_pred             ccCcccceeeccccccccccccccc
Confidence            9999999999999999999998765

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.68  E-value=4.2e-17  Score=117.47  Aligned_cols=124  Identities=21%  Similarity=0.207  Sum_probs=104.7

Q ss_pred             CccceEEEcCC---------CCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--c
Q 041168           41 CLWDGIKCNED---------NGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--L  109 (177)
Q Consensus        41 C~w~gv~c~~~---------~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--l  109 (177)
                      |.+..|.|...         ..++++|+|++|.|+..++.. .|..+++|+.|+|++|.+... .+..+..+++|++  |
T Consensus         8 C~~~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~-~f~~l~~L~~L~L~~N~i~~~-~~~~~~~~~~L~~L~L   85 (192)
T d1w8aa_           8 CEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDG-LFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQL   85 (192)
T ss_dssp             EETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSC-SGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEEC
T ss_pred             EcCCEEEEeCCCcCccCCCCCCCCCEEEeCCCCCccccccc-ccCCCceEeeeeccccccccc-cccccccccccceeee
Confidence            67888999532         257899999999998655331 678999999999999999976 7788999999999  9


Q ss_pred             ccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCC
Q 041168          110 SNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTV  171 (177)
Q Consensus       110 s~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~  171 (177)
                      ++|++....+..|..+++|++|+|++|  .+   ....+..|..+++|++|+|++|++....
T Consensus        86 s~N~l~~l~~~~F~~l~~L~~L~L~~N--~l---~~i~~~~f~~l~~L~~l~L~~N~~~~~~  142 (192)
T d1w8aa_          86 GENKIKEISNKMFLGLHQLKTLNLYDN--QI---SCVMPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSS--CC---CEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             ccccccccCHHHHhCCCcccccccCCc--cc---cccCHHHhcCCccccccccccccccccc
Confidence            999999777788999999999999999  55   4555667889999999999999998643

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.57  E-value=6.6e-15  Score=98.85  Aligned_cols=102  Identities=22%  Similarity=0.226  Sum_probs=85.2

Q ss_pred             EEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeC
Q 041168           56 IRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDL  133 (177)
Q Consensus        56 ~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~L  133 (177)
                      ++|++++|+++. ++   .+..++.|++|++++|.++ . +|+.+..+++|++  +++|.+. .+| .+..+++|++|++
T Consensus         1 R~L~Ls~n~l~~-l~---~l~~l~~L~~L~ls~N~l~-~-lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l   72 (124)
T d1dcea3           1 RVLHLAHKDLTV-LC---HLEQLLLVTHLDLSHNRLR-A-LPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLL   72 (124)
T ss_dssp             SEEECTTSCCSS-CC---CGGGGTTCCEEECCSSCCC-C-CCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEEC
T ss_pred             CEEEcCCCCCCC-Cc---ccccCCCCCEEECCCCccC-c-chhhhhhhhccccccccccccc-ccC-ccccccccCeEEC
Confidence            479999999983 43   5889999999999999998 4 8888999999999  9999998 454 5899999999999


Q ss_pred             CCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCC
Q 041168          134 SFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAS  169 (177)
Q Consensus       134 s~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g  169 (177)
                      ++|.|.-    ......+..+++|++|++++|+++.
T Consensus        73 ~~N~i~~----~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          73 CNNRLQQ----SAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CSSCCCS----SSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             CCCccCC----CCCchhhcCCCCCCEEECCCCcCCc
Confidence            9995421    1122468899999999999999874

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.50  E-value=3.4e-14  Score=101.90  Aligned_cols=110  Identities=21%  Similarity=0.233  Sum_probs=91.5

Q ss_pred             EEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeC
Q 041168           56 IRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDL  133 (177)
Q Consensus        56 ~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~L  133 (177)
                      ++++.++++++ .+|.  .+.  +.+++|+|++|.|+....+..|..+++|+.  +++|++....+..+..+++|++|+|
T Consensus        11 ~~v~Cs~~~L~-~iP~--~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~L   85 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPR--DIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             TEEECTTSCCS-SCCS--CCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CEEEEeCCCcC-ccCC--CCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeee
Confidence            37899999998 5776  553  689999999999985413567889999999  9999999888889999999999999


Q ss_pred             CCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCccc
Q 041168          134 SFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYAL  175 (177)
Q Consensus       134 s~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~l  175 (177)
                      ++|  ++   ....+..|.++++|++|+|++|+|++..|+.+
T Consensus        86 s~N--~l---~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f  122 (192)
T d1w8aa_          86 GEN--KI---KEISNKMFLGLHQLKTLNLYDNQISCVMPGSF  122 (192)
T ss_dssp             CSC--CC---CEECSSSSTTCTTCCEEECCSSCCCEECTTSS
T ss_pred             ccc--cc---cccCHHHHhCCCcccccccCCccccccCHHHh
Confidence            999  55   44456678999999999999999997545444

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.46  E-value=1.1e-14  Score=111.48  Aligned_cols=116  Identities=16%  Similarity=0.325  Sum_probs=103.7

Q ss_pred             CcEEEEEccC-CccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCC
Q 041168           53 GHVIRLDLTS-SCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLE  129 (177)
Q Consensus        53 ~~l~~L~l~~-n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~  129 (177)
                      .++++|++++ |.+.|.+|.  .+.++++|++|+|++|++.+. .+..+..+..|++  +++|.+.+.+|..+..++.|+
T Consensus        76 ~~L~~L~Ls~~N~l~g~iP~--~i~~L~~L~~L~Ls~N~l~~~-~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~  152 (313)
T d1ogqa_          76 PYLNFLYIGGINNLVGPIPP--AIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV  152 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCG--GGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCC
T ss_pred             cccccccccccccccccccc--ccccccccchhhhcccccccc-ccccccchhhhcccccccccccccCchhhccCcccc
Confidence            6899999986 889999999  999999999999999999976 7788899999999  999999999999999999999


Q ss_pred             EEeCCCCcCCcccCCCchhHHhhcCCCC-CEEEeecccCCCCCCcccc
Q 041168          130 SLDLSFNNFHLKLQGPSLANLAEKLANL-KVLHLGQVNTASTVPYALA  176 (177)
Q Consensus       130 ~L~Ls~N~~~l~~~~~~~p~~~~~l~~L-~~L~Ls~N~l~g~~p~~l~  176 (177)
                      ++++++|  .+   .+.+|..+..+.++ +.++++.|+++|..|..++
T Consensus       153 ~l~l~~n--~l---~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~  195 (313)
T d1ogqa_         153 GITFDGN--RI---SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA  195 (313)
T ss_dssp             EEECCSS--CC---EEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG
T ss_pred             eeecccc--cc---cccccccccccccccccccccccccccccccccc
Confidence            9999999  55   56788888888776 8899999999988887654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=3.8e-13  Score=100.90  Aligned_cols=95  Identities=26%  Similarity=0.221  Sum_probs=51.5

Q ss_pred             cccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhh
Q 041168           75 LFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAE  152 (177)
Q Consensus        75 l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~  152 (177)
                      +..++.|+.|++++|.+... .+..+..+.++++  +++|.+....+..+..++.|+.+++++|  .+   ....+..+.
T Consensus        96 ~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N--~l---~~~~~~~~~  169 (266)
T d1p9ag_          96 GQTLPALTVLDVSFNRLTSL-PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN--NL---TELPAGLLN  169 (266)
T ss_dssp             TTTCTTCCEEECCSSCCCCC-CSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS--CC---SCCCTTTTT
T ss_pred             ccccccccccccccccccee-eccccccccccccccccccccceeccccccccccchhcccccc--cc---cccCccccc
Confidence            33344444444444444322 2223333444444  4455554333444556667777777777  34   344455567


Q ss_pred             cCCCCCEEEeecccCCCCCCcccc
Q 041168          153 KLANLKVLHLGQVNTASTVPYALA  176 (177)
Q Consensus       153 ~l~~L~~L~Ls~N~l~g~~p~~l~  176 (177)
                      .+++|++|+|++|+|+ .+|+++.
T Consensus       170 ~l~~L~~L~Ls~N~L~-~lp~~~~  192 (266)
T d1p9ag_         170 GLENLDTLLLQENSLY-TIPKGFF  192 (266)
T ss_dssp             TCTTCCEEECCSSCCC-CCCTTTT
T ss_pred             cccccceeecccCCCc-ccChhHC
Confidence            7778888888888777 5776543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.1e-13  Score=96.91  Aligned_cols=105  Identities=21%  Similarity=0.147  Sum_probs=86.6

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      .++++|++++|.|+. ++.  .+..+++|+.|++++|.++ . ++ .+..+++|++  +++|++....+..+..+++|++
T Consensus        18 ~~lr~L~L~~n~I~~-i~~--~~~~l~~L~~L~Ls~N~i~-~-l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          18 VRDRELDLRGYKIPV-IEN--LGATLDQFDAIDFSDNEIR-K-LD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   91 (162)
T ss_dssp             TSCEEEECTTSCCCS-CCC--GGGGTTCCSEEECCSSCCC-E-EC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             CcCcEEECCCCCCCc-cCc--cccccccCCEEECCCCCCC-c-cC-CcccCcchhhhhcccccccCCCcccccccccccc
Confidence            478999999999984 565  5678899999999999998 3 54 5888999999  9999998555555678999999


Q ss_pred             EeCCCCcCCcccCCCchh--HHhhcCCCCCEEEeecccCCC
Q 041168          131 LDLSFNNFHLKLQGPSLA--NLAEKLANLKVLHLGQVNTAS  169 (177)
Q Consensus       131 L~Ls~N~~~l~~~~~~~p--~~~~~l~~L~~L~Ls~N~l~g  169 (177)
                      |++++|+  +    ..++  ..+..+++|++|++++|+++.
T Consensus        92 L~L~~N~--i----~~~~~l~~l~~l~~L~~L~l~~N~i~~  126 (162)
T d1a9na_          92 LILTNNS--L----VELGDLDPLASLKSLTYLCILRNPVTN  126 (162)
T ss_dssp             EECCSCC--C----CCGGGGGGGGGCTTCCEEECCSSGGGG
T ss_pred             ceecccc--c----cccccccccccccccchhhcCCCcccc
Confidence            9999994  4    2333  357889999999999999874

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.4e-13  Score=104.12  Aligned_cols=110  Identities=20%  Similarity=0.179  Sum_probs=81.9

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      .+++.+++++|.+++..+.  .+..++.|+.|++++|.++.. .+..|..+++|++  +++|++.+..|..|..+++|++
T Consensus       129 ~~L~~l~l~~N~l~~i~~~--~f~~~~~L~~L~l~~N~l~~l-~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~  205 (284)
T d1ozna_         129 AALQYLYLQDNALQALPDD--TFRDLGNLTHLFLHGNRISSV-PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT  205 (284)
T ss_dssp             TTCCEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             cccchhhhccccccccChh--HhccccchhhcccccCccccc-chhhhccccccchhhhhhccccccChhHhhhhhhccc
Confidence            4577777888877755455  667777888888888888754 4566777888888  7788887777777888888888


Q ss_pred             EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCC
Q 041168          131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAST  170 (177)
Q Consensus       131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~  170 (177)
                      |++++|  .+   ....+..|..+++|++|++++|++.+.
T Consensus       206 L~l~~N--~i---~~~~~~~~~~~~~L~~L~l~~N~l~C~  240 (284)
T d1ozna_         206 LYLFAN--NL---SALPTEALAPLRALQYLRLNDNPWVCD  240 (284)
T ss_dssp             EECCSS--CC---SCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred             cccccc--cc---ccccccccccccccCEEEecCCCCCCC
Confidence            888888  44   455566777888888888888877654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=3.2e-13  Score=102.06  Aligned_cols=116  Identities=22%  Similarity=0.182  Sum_probs=96.7

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      .++++|++++|.+....+.  .+..+..|+.+++++|.++.. .+..|..+++|+.  +++|++.+..+..+..+++|++
T Consensus       105 ~~L~~L~l~~n~~~~~~~~--~~~~~~~L~~l~l~~N~l~~i-~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~  181 (284)
T d1ozna_         105 GRLHTLHLDRCGLQELGPG--LFRGLAALQYLYLQDNALQAL-PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR  181 (284)
T ss_dssp             TTCCEEECTTSCCCCCCTT--TTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             ccCCEEecCCccccccccc--ccchhcccchhhhcccccccc-ChhHhccccchhhcccccCcccccchhhhccccccch
Confidence            5789999999988765555  677788999999999999864 4567888889998  9999998777788899999999


Q ss_pred             EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCcccc
Q 041168          131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYALA  176 (177)
Q Consensus       131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~l~  176 (177)
                      +++++|  .+   .+..|..|..+++|++|++++|.+.+..|..++
T Consensus       182 l~l~~N--~l---~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~  222 (284)
T d1ozna_         182 LLLHQN--RV---AHVHPHAFRDLGRLMTLYLFANNLSALPTEALA  222 (284)
T ss_dssp             EECCSS--CC---CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHT
T ss_pred             hhhhhc--cc---cccChhHhhhhhhcccccccccccccccccccc
Confidence            999999  55   556688899999999999999999976655553

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=2.8e-12  Score=96.08  Aligned_cols=108  Identities=20%  Similarity=0.090  Sum_probs=88.7

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      ++++.|++++|.+....+.  .+..+.++++|++++|.+... .+..+..++.|+.  +++|++.+..+..+..+++|++
T Consensus       100 ~~L~~L~l~~~~~~~~~~~--~~~~l~~l~~L~l~~n~l~~l-~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~  176 (266)
T d1p9ag_         100 PALTVLDVSFNRLTSLPLG--ALRGLGELQELYLKGNELKTL-PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDT  176 (266)
T ss_dssp             TTCCEEECCSSCCCCCCSS--TTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCE
T ss_pred             cccccccccccccceeecc--cccccccccccccccccccee-ccccccccccchhcccccccccccCccccccccccce
Confidence            4566666666666544444  667889999999999999964 4566778999999  9999999777778999999999


Q ss_pred             EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCC
Q 041168          131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAS  169 (177)
Q Consensus       131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g  169 (177)
                      |+|++|  .+    ..+|..+..+++|+.|+|++|++..
T Consensus       177 L~Ls~N--~L----~~lp~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         177 LLLQEN--SL----YTIPKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             EECCSS--CC----CCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             eecccC--CC----cccChhHCCCCCCCEEEecCCCCCC
Confidence            999999  55    3688888899999999999999864

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=7e-12  Score=86.97  Aligned_cols=87  Identities=23%  Similarity=0.208  Sum_probs=43.0

Q ss_pred             ccccCcCCcEEEccCC-CCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHH
Q 041168           74 SLFQLVHLEWLVLSNN-HFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANL  150 (177)
Q Consensus        74 ~l~~l~~L~~L~Ls~n-~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~  150 (177)
                      .+..+++|++|++++| .++.. .+..|..+++|+.  |++|+++...+..|..+++|++|+|++|  ++    ..+|..
T Consensus        26 ~l~~l~~l~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N--~l----~~l~~~   98 (156)
T d2ifga3          26 HLPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN--AL----ESLSWK   98 (156)
T ss_dssp             TSCSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS--CC----SCCCST
T ss_pred             cccCccccCeeecCCCcccccc-CchhhccccccCcceeeccccCCcccccccccccccceeccCC--CC----cccChh
Confidence            4445555555555443 24422 2234555555555  5555555444455555555555555555  23    123333


Q ss_pred             hhcCCCCCEEEeecccC
Q 041168          151 AEKLANLKVLHLGQVNT  167 (177)
Q Consensus       151 ~~~l~~L~~L~Ls~N~l  167 (177)
                      .....+|++|+|++|++
T Consensus        99 ~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          99 TVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             TTCSCCCCEEECCSSCC
T ss_pred             hhccccccccccCCCcc
Confidence            22333455555555555

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.24  E-value=3e-11  Score=80.54  Aligned_cols=100  Identities=27%  Similarity=0.275  Sum_probs=79.4

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCC-ChhhhCCCCCC
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQI-PAELLELSDLE  129 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~-p~~~~~l~~L~  129 (177)
                      .++++|++++|.++ .+|+  .+..+++|+.|++++|.++.  +| .+..+++|++  +++|++.... ...+..+++|+
T Consensus        20 ~~L~~L~ls~N~l~-~lp~--~~~~l~~L~~L~l~~N~i~~--l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~   93 (124)
T d1dcea3          20 LLVTHLDLSHNRLR-ALPP--ALAALRCLEVLQASDNALEN--VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLV   93 (124)
T ss_dssp             TTCCEEECCSSCCC-CCCG--GGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCC
T ss_pred             CCCCEEECCCCccC-cchh--hhhhhhcccccccccccccc--cC-ccccccccCeEECCCCccCCCCCchhhcCCCCCC
Confidence            57999999999998 5677  79999999999999999984  55 5899999999  9999998432 25688999999


Q ss_pred             EEeCCCCcCCcccCCCchhHHhhcCCCCCEE
Q 041168          130 SLDLSFNNFHLKLQGPSLANLAEKLANLKVL  160 (177)
Q Consensus       130 ~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L  160 (177)
                      +|++++|++.-  ..+........+++|+.|
T Consensus        94 ~L~l~~N~i~~--~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          94 LLNLQGNSLCQ--EEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             EEECTTSGGGG--SSSCTTHHHHHCTTCSEE
T ss_pred             EEECCCCcCCc--CccHHHHHHHHCcCcceE
Confidence            99999996532  012223445667888876

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.20  E-value=2.6e-11  Score=91.95  Aligned_cols=111  Identities=20%  Similarity=0.155  Sum_probs=75.9

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      .+++.|++++|......+.  .+..++.+++|++++|.+... .+..+..+++|++  |++|++. .+|.++..+++|++
T Consensus       171 ~~L~~L~l~~n~~~~~~~~--~~~~~~~l~~L~~s~n~l~~~-~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~  246 (305)
T d1xkua_         171 PSLTELHLDGNKITKVDAA--SLKGLNNLAKLGLSFNSISAV-DNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQV  246 (305)
T ss_dssp             TTCSEEECTTSCCCEECTG--GGTTCTTCCEEECCSSCCCEE-CTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCE
T ss_pred             CccCEEECCCCcCCCCChh--Hhhcccccccccccccccccc-ccccccccccceeeeccccccc-ccccccccccCCCE
Confidence            4677777777777766666  677778888888888888754 5667777788888  8888876 56777888888888


Q ss_pred             EeCCCCcCCcccCCCc--hhHHhhcCCCCCEEEeecccCC
Q 041168          131 LDLSFNNFHLKLQGPS--LANLAEKLANLKVLHLGQVNTA  168 (177)
Q Consensus       131 L~Ls~N~~~l~~~~~~--~p~~~~~l~~L~~L~Ls~N~l~  168 (177)
                      |+|++|+|+- +....  .+.....+.+|+.|+|++|++.
T Consensus       247 L~Ls~N~i~~-i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         247 VYLHNNNISA-IGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             EECCSSCCCC-CCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             EECCCCccCc-cChhhccCcchhcccCCCCEEECCCCcCc
Confidence            8888884321 00000  0122345677888888888774

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.19  E-value=3e-11  Score=91.66  Aligned_cols=107  Identities=19%  Similarity=0.159  Sum_probs=90.7

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      .+++.+++++|.+.. ++.  .  .+++|+.|++++|.+... .+..+..++.+++  +++|.+.+..+..+..+++|++
T Consensus       150 ~~L~~l~l~~n~l~~-l~~--~--~~~~L~~L~l~~n~~~~~-~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~  223 (305)
T d1xkua_         150 KKLSYIRIADTNITT-IPQ--G--LPPSLTELHLDGNKITKV-DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRE  223 (305)
T ss_dssp             TTCCEEECCSSCCCS-CCS--S--CCTTCSEEECTTSCCCEE-CTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCE
T ss_pred             cccCccccccCCccc-cCc--c--cCCccCEEECCCCcCCCC-ChhHhhcccccccccccccccccccccccccccccee
Confidence            468889999998873 444  3  367899999999999876 7788999999998  9999999877888999999999


Q ss_pred             EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCC
Q 041168          131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVP  172 (177)
Q Consensus       131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p  172 (177)
                      |+|++|  .+    ..+|..+..+++|++|+|++|+|+. ++
T Consensus       224 L~L~~N--~L----~~lp~~l~~l~~L~~L~Ls~N~i~~-i~  258 (305)
T d1xkua_         224 LHLNNN--KL----VKVPGGLADHKYIQVVYLHNNNISA-IG  258 (305)
T ss_dssp             EECCSS--CC----SSCCTTTTTCSSCCEEECCSSCCCC-CC
T ss_pred             eecccc--cc----cccccccccccCCCEEECCCCccCc-cC
Confidence            999999  45    4578889999999999999999984 44

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=3.8e-11  Score=83.13  Aligned_cols=96  Identities=22%  Similarity=0.222  Sum_probs=75.4

Q ss_pred             CCccceEEEcCC-----------CCcEEEEEccCCc-cccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCcccc
Q 041168           40 CCLWDGIKCNED-----------NGHVIRLDLTSSC-LYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLT  107 (177)
Q Consensus        40 ~C~w~gv~c~~~-----------~~~l~~L~l~~n~-l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~  107 (177)
                      |+.+.++.|...           ..+++.|++++|+ ++...+.  .|.+++.|+.|+|++|+|+.. .+..|..+++|+
T Consensus         7 c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~--~f~~l~~L~~L~Ls~N~l~~i-~~~~f~~l~~L~   83 (156)
T d2ifga3           7 PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELR--DLRGLGELRNLTIVKSGLRFV-APDAFHFTPRLS   83 (156)
T ss_dssp             CSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGG--GSCSCCCCSEEECCSSCCCEE-CTTGGGSCSCCC
T ss_pred             cCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCch--hhccccccCcceeeccccCCc-cccccccccccc
Confidence            445677877431           2578999998764 7755455  789999999999999999965 567899999999


Q ss_pred             c--cccccCCCCCChhhhCCCCCCEEeCCCCcCC
Q 041168          108 A--LSNPSFFGQIPAELLELSDLESLDLSFNNFH  139 (177)
Q Consensus       108 ~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~  139 (177)
                      +  |++|++. .+|..+.....|+.|+|++|+|.
T Consensus        84 ~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          84 RLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             EEECCSSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             ceeccCCCCc-ccChhhhccccccccccCCCccc
Confidence            9  9999998 55555445558999999999653

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.07  E-value=6.7e-10  Score=80.08  Aligned_cols=105  Identities=24%  Similarity=0.337  Sum_probs=63.8

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCC--------------
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFG--------------  116 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~--------------  116 (177)
                      +++++|++++|.+++. +   .+..+++|++|++++|+++.  ++ .+..+++|+.  +++|.+..              
T Consensus        68 ~~L~~L~L~~n~i~~l-~---~~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~l~~~~~~~~~~l~~l~~l~~l~  140 (210)
T d1h6ta2          68 PNVTKLFLNGNKLTDI-K---PLANLKNLGWLFLDENKVKD--LS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLY  140 (210)
T ss_dssp             TTCCEEECCSSCCCCC-G---GGTTCTTCCEEECCSSCCCC--GG-GGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEE
T ss_pred             CCCCEEeCCCccccCc-c---ccccCccccccccccccccc--cc-cccccccccccccccccccccccccccccccccc
Confidence            4666777777766642 2   24556666677776666652  33 3455555555  44444331              


Q ss_pred             ------CCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCC
Q 041168          117 ------QIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVP  172 (177)
Q Consensus       117 ------~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p  172 (177)
                            ..+..+..+++|+++++++|  .+   .. ++ .+..+++|++|+|++|+++. +|
T Consensus       141 ~~~n~l~~~~~~~~l~~L~~l~l~~n--~l---~~-i~-~l~~l~~L~~L~Ls~N~i~~-l~  194 (210)
T d1h6ta2         141 LGNNKITDITVLSRLTKLDTLSLEDN--QI---SD-IV-PLAGLTKLQNLYLSKNHISD-LR  194 (210)
T ss_dssp             CCSSCCCCCGGGGGCTTCSEEECCSS--CC---CC-CG-GGTTCTTCCEEECCSSCCCB-CG
T ss_pred             cccccccccccccccccccccccccc--cc---cc-cc-cccCCCCCCEEECCCCCCCC-Ch
Confidence                  01233556777788888777  34   32 33 37788999999999998874 55

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.06  E-value=4.8e-10  Score=80.14  Aligned_cols=101  Identities=24%  Similarity=0.359  Sum_probs=69.9

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      .++++|++++|.+++..    .+..+++|++|++++|.+..  ++ .+..++.|+.  +++|.+.. + ..+..+++|+.
T Consensus        62 ~nL~~L~Ls~N~l~~~~----~l~~l~~L~~L~l~~n~~~~--~~-~l~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~  132 (199)
T d2omxa2          62 NNLTQINFSNNQLTDIT----PLKNLTKLVDILMNNNQIAD--IT-PLANLTNLTGLTLFNNQITD-I-DPLKNLTNLNR  132 (199)
T ss_dssp             TTCCEEECCSSCCCCCG----GGTTCTTCCEEECCSSCCCC--CG-GGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSE
T ss_pred             CCcCcCccccccccCcc----cccCCccccccccccccccc--cc-cccccccccccccccccccc-c-cccchhhhhHH
Confidence            56778888887776432    36677778888888777763  33 4677777777  66666653 2 34677888888


Q ss_pred             EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCC
Q 041168          131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAS  169 (177)
Q Consensus       131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g  169 (177)
                      |++++|.  +    ..++ .+..+++|+.|++.+|++++
T Consensus       133 L~l~~n~--l----~~~~-~l~~~~~L~~L~l~~n~l~~  164 (199)
T d2omxa2         133 LELSSNT--I----SDIS-ALSGLTSLQQLNFSSNQVTD  164 (199)
T ss_dssp             EECCSSC--C----CCCG-GGTTCTTCSEEECCSSCCCC
T ss_pred             hhhhhhh--h----cccc-cccccccccccccccccccC
Confidence            8888883  3    2233 46778888888888888875

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=1.1e-10  Score=81.19  Aligned_cols=87  Identities=18%  Similarity=0.133  Sum_probs=71.9

Q ss_pred             ccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHh
Q 041168           74 SLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLA  151 (177)
Q Consensus        74 ~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~  151 (177)
                      .+.++..+++|+|++|+|+.  ++..+..+++|++  +++|.+. .++ .+..+++|++|++++|  .+   ....+..+
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~--i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N--~i---~~l~~~~~   83 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNN--RI---CRIGEGLD   83 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSS--CC---CEECSCHH
T ss_pred             hccCcCcCcEEECCCCCCCc--cCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccc--cc---cCCCcccc
Confidence            46778899999999999984  7776788999999  9999998 443 5889999999999999  44   33333456


Q ss_pred             hcCCCCCEEEeecccCCC
Q 041168          152 EKLANLKVLHLGQVNTAS  169 (177)
Q Consensus       152 ~~l~~L~~L~Ls~N~l~g  169 (177)
                      ..+++|++|++++|++..
T Consensus        84 ~~l~~L~~L~L~~N~i~~  101 (162)
T d1a9na_          84 QALPDLTELILTNNSLVE  101 (162)
T ss_dssp             HHCTTCCEEECCSCCCCC
T ss_pred             ccccccccceeccccccc
Confidence            789999999999999974

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.03  E-value=3.4e-12  Score=91.90  Aligned_cols=103  Identities=20%  Similarity=0.190  Sum_probs=84.3

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      .+++.|++++|.++. ++   .+..+++|+.|++++|.++ . +|..+..++.|++  +++|++. .+ +.+..+++|++
T Consensus        48 ~~L~~L~Ls~n~I~~-i~---~l~~l~~L~~L~Ls~N~i~-~-i~~~~~~~~~L~~L~l~~N~i~-~l-~~~~~l~~L~~  119 (198)
T d1m9la_          48 KACKHLALSTNNIEK-IS---SLSGMENLRILSLGRNLIK-K-IENLDAVADTLEELWISYNQIA-SL-SGIEKLVNLRV  119 (198)
T ss_dssp             TTCCEEECSEEEESC-CC---CHHHHTTCCEEECCEEEEC-S-CSSHHHHHHHCCEEECSEEECC-CH-HHHHHHHHSSE
T ss_pred             cccceeECcccCCCC-cc---cccCCccccChhhcccccc-c-cccccccccccccccccccccc-cc-ccccccccccc
Confidence            679999999999984 43   5888999999999999998 3 6765566678888  9999987 34 45788999999


Q ss_pred             EeCCCCcCCcccCCCchh--HHhhcCCCCCEEEeecccCCC
Q 041168          131 LDLSFNNFHLKLQGPSLA--NLAEKLANLKVLHLGQVNTAS  169 (177)
Q Consensus       131 L~Ls~N~~~l~~~~~~~p--~~~~~l~~L~~L~Ls~N~l~g  169 (177)
                      |++++|  .+    ..++  ..+..+++|+.|+|++|++..
T Consensus       120 L~L~~N--~i----~~~~~~~~l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_         120 LYMSNN--KI----TNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             EEESEE--EC----CCHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred             cccccc--hh----ccccccccccCCCccceeecCCCcccc
Confidence            999999  44    3344  468899999999999998764

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.01  E-value=6.6e-10  Score=85.93  Aligned_cols=106  Identities=23%  Similarity=0.219  Sum_probs=70.0

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCC-------------------CCccccCCccccc--ccc
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSE-------------------IPSEIKNLSRLTA--LSN  111 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-------------------~p~~~~~l~~L~~--ls~  111 (177)
                      .+++.|++++|.+++..    .+..+++|+.|+++++.+++..                   ....+..++.++.  +++
T Consensus       241 ~~L~~L~l~~n~l~~~~----~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~  316 (384)
T d2omza2         241 TNLTDLDLANNQISNLA----PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYF  316 (384)
T ss_dssp             TTCSEEECCSSCCCCCG----GGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCS
T ss_pred             cccchhccccCccCCCC----cccccccCCEeeccCcccCCCCccccccccccccccccccccccccchhcccCeEECCC
Confidence            45677777777666432    3455666666666666655320                   1123445556666  778


Q ss_pred             ccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCC
Q 041168          112 PSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTV  171 (177)
Q Consensus       112 n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~  171 (177)
                      |++.+. + .+..+++|++|++++|  .+   + .++ .+..+++|++|++++|++++..
T Consensus       317 n~l~~l-~-~l~~l~~L~~L~L~~n--~l---~-~l~-~l~~l~~L~~L~l~~N~l~~l~  367 (384)
T d2omza2         317 NNISDI-S-PVSSLTKLQRLFFANN--KV---S-DVS-SLANLTNINWLSAGHNQISDLT  367 (384)
T ss_dssp             SCCSCC-G-GGGGCTTCCEEECCSS--CC---C-CCG-GGGGCTTCCEEECCSSCCCBCG
T ss_pred             CCCCCC-c-ccccCCCCCEEECCCC--CC---C-CCh-hHcCCCCCCEEECCCCcCCCCh
Confidence            888743 3 3788889999999998  44   2 344 5788899999999999988644

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.99  E-value=2.1e-09  Score=76.67  Aligned_cols=104  Identities=24%  Similarity=0.328  Sum_probs=85.1

Q ss_pred             CCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCC
Q 041168           52 NGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLE  129 (177)
Q Consensus        52 ~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~  129 (177)
                      .++++.|++++|.+.. ++   .+..++.|+.|+++++.+..   ...+..+++|+.  +++|++. .+ +.+..+++|+
T Consensus        83 l~~L~~L~l~~n~~~~-~~---~l~~l~~L~~L~l~~~~~~~---~~~~~~l~~L~~L~l~~n~l~-~~-~~l~~~~~L~  153 (199)
T d2omxa2          83 LTKLVDILMNNNQIAD-IT---PLANLTNLTGLTLFNNQITD---IDPLKNLTNLNRLELSSNTIS-DI-SALSGLTSLQ  153 (199)
T ss_dssp             CTTCCEEECCSSCCCC-CG---GGTTCTTCSEEECCSSCCCC---CGGGTTCTTCSEEECCSSCCC-CC-GGGTTCTTCS
T ss_pred             Cccccccccccccccc-cc---cccccccccccccccccccc---ccccchhhhhHHhhhhhhhhc-cc-cccccccccc
Confidence            3689999999998874 33   47889999999999999873   345788999999  9999986 44 4688999999


Q ss_pred             EEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCC
Q 041168          130 SLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVP  172 (177)
Q Consensus       130 ~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p  172 (177)
                      .|++.+|  .+   .. ++ .+..+++|++|++++|+++. ++
T Consensus       154 ~L~l~~n--~l---~~-l~-~l~~l~~L~~L~ls~N~i~~-i~  188 (199)
T d2omxa2         154 QLNFSSN--QV---TD-LK-PLANLTTLERLDISSNKVSD-IS  188 (199)
T ss_dssp             EEECCSS--CC---CC-CG-GGTTCTTCCEEECCSSCCCC-CG
T ss_pred             ccccccc--cc---cC-Cc-cccCCCCCCEEECCCCCCCC-Cc
Confidence            9999999  44   33 43 48899999999999999985 54

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.97  E-value=9.6e-10  Score=84.97  Aligned_cols=80  Identities=21%  Similarity=0.353  Sum_probs=66.5

Q ss_pred             ccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHh
Q 041168           74 SLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLA  151 (177)
Q Consensus        74 ~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~  151 (177)
                      .+..++.++.|++++|++++  ++ .+..+++|++  +++|+++ .++ .+..+++|++|++++|  ++   ++ ++. +
T Consensus       302 ~~~~~~~l~~L~ls~n~l~~--l~-~l~~l~~L~~L~L~~n~l~-~l~-~l~~l~~L~~L~l~~N--~l---~~-l~~-l  369 (384)
T d2omza2         302 PISNLKNLTYLTLYFNNISD--IS-PVSSLTKLQRLFFANNKVS-DVS-SLANLTNINWLSAGHN--QI---SD-LTP-L  369 (384)
T ss_dssp             GGGGCTTCSEEECCSSCCSC--CG-GGGGCTTCCEEECCSSCCC-CCG-GGGGCTTCCEEECCSS--CC---CB-CGG-G
T ss_pred             ccchhcccCeEECCCCCCCC--Cc-ccccCCCCCEEECCCCCCC-CCh-hHcCCCCCCEEECCCC--cC---CC-Chh-h
Confidence            35677899999999999985  43 4888999999  9999997 444 6899999999999999  45   43 333 8


Q ss_pred             hcCCCCCEEEeecc
Q 041168          152 EKLANLKVLHLGQV  165 (177)
Q Consensus       152 ~~l~~L~~L~Ls~N  165 (177)
                      .++++|+.|+|++|
T Consensus       370 ~~l~~L~~L~L~~N  383 (384)
T d2omza2         370 ANLTRITQLGLNDQ  383 (384)
T ss_dssp             TTCTTCSEEECCCE
T ss_pred             ccCCCCCEeeCCCC
Confidence            89999999999988

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.93  E-value=3.8e-09  Score=76.01  Aligned_cols=107  Identities=20%  Similarity=0.248  Sum_probs=77.7

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      ..++.|+++++.++. ++   .+..+++|++|++++|++++  ++ .+..+++|++  +++|+++ .+| .+..+++|+.
T Consensus        46 ~~L~~L~l~~~~i~~-l~---~l~~l~~L~~L~L~~n~i~~--l~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~  116 (210)
T d1h6ta2          46 NSIDQIIANNSDIKS-VQ---GIQYLPNVTKLFLNGNKLTD--IK-PLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKS  116 (210)
T ss_dssp             HTCCEEECTTSCCCC-CT---TGGGCTTCCEEECCSSCCCC--CG-GGTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCE
T ss_pred             cCccEEECcCCCCCC-ch---hHhhCCCCCEEeCCCccccC--cc-ccccCcccccccccccccc-ccc-cccccccccc
Confidence            368899999999885 33   47889999999999999985  44 4788999999  9999997 454 5888999999


Q ss_pred             EeCCCCcCCcccC----------------CCchhHHhhcCCCCCEEEeecccCCC
Q 041168          131 LDLSFNNFHLKLQ----------------GPSLANLAEKLANLKVLHLGQVNTAS  169 (177)
Q Consensus       131 L~Ls~N~~~l~~~----------------~~~~p~~~~~l~~L~~L~Ls~N~l~g  169 (177)
                      |++++|.+.- +.                .-.-+..+..+++|+++++++|++++
T Consensus       117 L~l~~~~~~~-~~~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~  170 (210)
T d1h6ta2         117 LSLEHNGISD-INGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD  170 (210)
T ss_dssp             EECTTSCCCC-CGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC
T ss_pred             cccccccccc-cccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999884310 00                00011234556677777777777664

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=1.3e-09  Score=79.60  Aligned_cols=95  Identities=20%  Similarity=0.207  Sum_probs=74.1

Q ss_pred             CccceEEEcCC---------CCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCC-ccccCCccccc--
Q 041168           41 CLWDGIKCNED---------NGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIP-SEIKNLSRLTA--  108 (177)
Q Consensus        41 C~w~gv~c~~~---------~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p-~~~~~l~~L~~--  108 (177)
                      |....|.|...         ..++++|++++|.++...+.  .|.++++|++|++++|.+... ++ ..|..++.+++  
T Consensus         8 C~~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~~~--~f~~l~~L~~L~ls~n~~~~~-i~~~~f~~l~~l~~l~   84 (242)
T d1xwdc1           8 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKG--AFSGFGDLEKIEISQNDVLEV-IEADVFSNLPKLHEIR   84 (242)
T ss_dssp             ECSSEEEEESCSCSSCCSCSCSCCSEEEEESCCCCEECTT--TTTTCTTCCEEEEESCTTCCE-ECSSSEESCTTCCEEE
T ss_pred             CcCCEEEEeCCCCCCcCCCCCCCCCEEECcCCcCCccChh--Hhhccchhhhhhhccccccce-eecccccccccccccc
Confidence            56778888532         24789999999999854445  688999999999999998754 43 56778888888  


Q ss_pred             -cccccCCCCCChhhhCCCCCCEEeCCCCcC
Q 041168          109 -LSNPSFFGQIPAELLELSDLESLDLSFNNF  138 (177)
Q Consensus       109 -ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~  138 (177)
                       ...|++....+..+..+++|+++++++|.+
T Consensus        85 ~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l  115 (242)
T d1xwdc1          85 IEKANNLLYINPEAFQNLPNLQYLLISNTGI  115 (242)
T ss_dssp             EECCTTCCEECTTSEECCTTCCEEEEESCCC
T ss_pred             ccccccccccccccccccccccccccchhhh
Confidence             345677766777789999999999999854

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.83  E-value=1.1e-08  Score=74.24  Aligned_cols=102  Identities=25%  Similarity=0.277  Sum_probs=68.4

Q ss_pred             CCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCC
Q 041168           52 NGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLE  129 (177)
Q Consensus        52 ~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~  129 (177)
                      ..+++.++++++...+..    .+...+.++.+.++.+.+..   ...+..+++|++  +++|.+...  ..++.+++|+
T Consensus       106 l~~L~~l~l~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~  176 (227)
T d1h6ua2         106 LQSIKTLDLTSTQITDVT----PLAGLSNLQVLYLDLNQITN---ISPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLT  176 (227)
T ss_dssp             CTTCCEEECTTSCCCCCG----GGTTCTTCCEEECCSSCCCC---CGGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCC
T ss_pred             cccccccccccccccccc----hhccccchhhhhchhhhhch---hhhhccccccccccccccccccc--hhhcccccce
Confidence            357788888887766432    35566777777777777763   234566677777  777776532  3467778888


Q ss_pred             EEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCC
Q 041168          130 SLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAS  169 (177)
Q Consensus       130 ~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g  169 (177)
                      +|++++|  .+   . .++ .++.+++|++|+|++|++++
T Consensus       177 ~L~Ls~n--~l---~-~l~-~l~~l~~L~~L~Ls~N~lt~  209 (227)
T d1h6ua2         177 TLKADDN--KI---S-DIS-PLASLPNLIEVHLKNNQISD  209 (227)
T ss_dssp             EEECCSS--CC---C-CCG-GGGGCTTCCEEECTTSCCCB
T ss_pred             ecccCCC--cc---C-CCh-hhcCCCCCCEEECcCCcCCC
Confidence            8888887  34   2 233 36777888888888888774

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.83  E-value=1.1e-08  Score=74.05  Aligned_cols=96  Identities=22%  Similarity=0.286  Sum_probs=65.6

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES  130 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~  130 (177)
                      ..+..+.++.+.+....    .+..++.|+.|++++|.+...   ..+..+++|+.  +++|++.+ ++ .+..+++|++
T Consensus       129 ~~~~~l~~~~~~~~~~~----~~~~~~~L~~L~l~~n~~~~~---~~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~  199 (227)
T d1h6ua2         129 SNLQVLYLDLNQITNIS----PLAGLTNLQYLSIGNAQVSDL---TPLANLSKLTTLKADDNKISD-IS-PLASLPNLIE  199 (227)
T ss_dssp             TTCCEEECCSSCCCCCG----GGGGCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCE
T ss_pred             cchhhhhchhhhhchhh----hhccccccccccccccccccc---hhhcccccceecccCCCccCC-Ch-hhcCCCCCCE
Confidence            56677777777665322    456677788888888877632   34777788888  88887763 43 3677888888


Q ss_pred             EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeec
Q 041168          131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQ  164 (177)
Q Consensus       131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~  164 (177)
                      |++++|  ++   + .++ .+..+++|+.|++++
T Consensus       200 L~Ls~N--~l---t-~i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         200 VHLKNN--QI---S-DVS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             EECTTS--CC---C-BCG-GGTTCTTCCEEEEEE
T ss_pred             EECcCC--cC---C-CCc-ccccCCCCCEEEeeC
Confidence            888888  44   2 343 267788888888763

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=3.1e-08  Score=72.07  Aligned_cols=103  Identities=17%  Similarity=0.124  Sum_probs=80.5

Q ss_pred             EEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCC-ccccCCccccc--cccccCCCCC-ChhhhCCCCCCEE
Q 041168           56 IRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIP-SEIKNLSRLTA--LSNPSFFGQI-PAELLELSDLESL  131 (177)
Q Consensus        56 ~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p-~~~~~l~~L~~--ls~n~l~~~~-p~~~~~l~~L~~L  131 (177)
                      ++++.++..++ .+|.  .+.  +.+++|++++|.++.  +| ..|..+++|++  +++|.+...+ +..|..++.++++
T Consensus        11 ~~i~c~~~~l~-~iP~--~l~--~~l~~L~Ls~n~i~~--l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l   83 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPS--DLP--RNAIELRFVLTKLRV--IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEI   83 (242)
T ss_dssp             SEEEEESCSCS-SCCS--CSC--SCCSEEEEESCCCCE--ECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEE
T ss_pred             CEEEEeCCCCC-CcCC--CCC--CCCCEEECcCCcCCc--cChhHhhccchhhhhhhccccccceeeccccccccccccc
Confidence            36778888888 5776  553  589999999999984  55 46899999999  9999887544 4467889999999


Q ss_pred             eCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCC
Q 041168          132 DLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAS  169 (177)
Q Consensus       132 ~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g  169 (177)
                      .+..++ .+   ....+..+..+++|++|++++|.+..
T Consensus        84 ~~~~~n-~l---~~~~~~~~~~l~~L~~l~l~~~~l~~  117 (242)
T d1xwdc1          84 RIEKAN-NL---LYINPEAFQNLPNLQYLLISNTGIKH  117 (242)
T ss_dssp             EEECCT-TC---CEECTTSEECCTTCCEEEEESCCCCS
T ss_pred             cccccc-cc---cccccccccccccccccccchhhhcc
Confidence            876431 34   44556678899999999999999874

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.66  E-value=4.3e-08  Score=74.29  Aligned_cols=96  Identities=25%  Similarity=0.275  Sum_probs=72.2

Q ss_pred             cEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccccccccCCCCCChhhhCCCCCCEEeC
Q 041168           54 HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTALSNPSFFGQIPAELLELSDLESLDL  133 (177)
Q Consensus        54 ~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~ls~n~l~~~~p~~~~~l~~L~~L~L  133 (177)
                      ++++|++++++++ .+|+  .   +++|++|++++|+|+ . +|..++.+..|. +++|++. .++.   -.+.|++|++
T Consensus        39 ~l~~LdLs~~~L~-~lp~--~---~~~L~~L~Ls~N~l~-~-lp~~~~~L~~L~-l~~n~l~-~l~~---lp~~L~~L~L  105 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPE--L---PPHLESLVASCNSLT-E-LPELPQSLKSLL-VDNNNLK-ALSD---LPPLLEYLGV  105 (353)
T ss_dssp             TCSEEECTTSCCS-CCCS--C---CTTCSEEECCSSCCS-S-CCCCCTTCCEEE-CCSSCCS-CCCS---CCTTCCEEEC
T ss_pred             CCCEEEeCCCCCC-CCCC--C---CCCCCEEECCCCCCc-c-cccchhhhhhhh-hhhcccc-hhhh---hccccccccc
Confidence            5789999999998 4665  3   468999999999998 4 887655433333 7788776 4432   1246999999


Q ss_pred             CCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCC
Q 041168          134 SFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAS  169 (177)
Q Consensus       134 s~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g  169 (177)
                      ++|  .+    ..+|. ++.+++|++|++++|.+..
T Consensus       106 ~~n--~l----~~lp~-~~~l~~L~~L~l~~~~~~~  134 (353)
T d1jl5a_         106 SNN--QL----EKLPE-LQNSSFLKIIDVDNNSLKK  134 (353)
T ss_dssp             CSS--CC----SSCCC-CTTCTTCCEEECCSSCCSC
T ss_pred             ccc--cc----ccccc-hhhhccceeeccccccccc
Confidence            999  44    34564 5789999999999998874

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.66  E-value=3e-10  Score=81.50  Aligned_cols=85  Identities=28%  Similarity=0.323  Sum_probs=71.4

Q ss_pred             ccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHh
Q 041168           74 SLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLA  151 (177)
Q Consensus        74 ~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~  151 (177)
                      .+..+++|++|+|++|.|+.  ++ .+..+++|++  +++|.+. .+|..+..+++|++|++++|  .+    ..++ .+
T Consensus        43 sl~~L~~L~~L~Ls~n~I~~--i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N--~i----~~l~-~~  111 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYN--QI----ASLS-GI  111 (198)
T ss_dssp             HHHHTTTCCEEECSEEEESC--CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEE--EC----CCHH-HH
T ss_pred             HHhcccccceeECcccCCCC--cc-cccCCccccChhhcccccc-cccccccccccccccccccc--cc----cccc-cc
Confidence            68889999999999999983  54 5888999999  9999997 66766666778999999999  44    3344 47


Q ss_pred             hcCCCCCEEEeecccCCC
Q 041168          152 EKLANLKVLHLGQVNTAS  169 (177)
Q Consensus       152 ~~l~~L~~L~Ls~N~l~g  169 (177)
                      ..+++|++|++++|+|+.
T Consensus       112 ~~l~~L~~L~L~~N~i~~  129 (198)
T d1m9la_         112 EKLVNLRVLYMSNNKITN  129 (198)
T ss_dssp             HHHHHSSEEEESEEECCC
T ss_pred             cccccccccccccchhcc
Confidence            889999999999999974

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=1.9e-08  Score=78.70  Aligned_cols=113  Identities=17%  Similarity=0.112  Sum_probs=79.7

Q ss_pred             CcEEEEEccCCcccccc-CCCcccccCcCCcEEEccCCCCCCC---CCCccccCCccccc--cccccCCCC----CChhh
Q 041168           53 GHVIRLDLTSSCLYGSI-NSSSSLFQLVHLEWLVLSNNHFNFS---EIPSEIKNLSRLTA--LSNPSFFGQ----IPAEL  122 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~-~~~~~l~~l~~L~~L~Ls~n~l~~~---~~p~~~~~l~~L~~--ls~n~l~~~----~p~~~  122 (177)
                      .+|++||+++|++++.. ..  .+..+++++.|+|++|.++..   .+...+..+++|++  |++|.+...    +...+
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~--l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l   79 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAE--LLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL   79 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHH--HHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred             CCCCEEEeeCCcCChHHHHH--HHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHH
Confidence            47999999999998532 22  456788999999999998731   02345678889999  999987521    11122


Q ss_pred             h-CCCCCCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCC
Q 041168          123 L-ELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTA  168 (177)
Q Consensus       123 ~-~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~  168 (177)
                      . ...+|++|+|++|++.-.. ...++..+..+++|++|++++|.++
T Consensus        80 ~~~~~~L~~L~L~~n~it~~~-~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          80 QTPSCKIQKLSLQNCCLTGAG-CGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             CSTTCCCCEEECTTSCCBGGG-HHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             hcCCCCCCEEECCCCCccccc-cccccchhhccccccccccccccch
Confidence            1 2357999999999542100 0124566788999999999999875

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=7.1e-08  Score=72.29  Aligned_cols=34  Identities=26%  Similarity=0.216  Sum_probs=17.7

Q ss_pred             CcEEEEEccCCccccccCCCcccccCcCCcEEEccC
Q 041168           53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSN   88 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~   88 (177)
                      +++++|+++++.+.+....  .+..+++|++|++++
T Consensus        71 ~~L~~L~L~~~~l~~~~~~--~l~~~~~L~~L~Ls~  104 (284)
T d2astb2          71 SKLQNLSLEGLRLSDPIVN--TLAKNSNLVRLNLSG  104 (284)
T ss_dssp             CCCSEEECTTCBCCHHHHH--HHTTCTTCSEEECTT
T ss_pred             CCcccccccccCCCcHHHH--HHhcCCCCcCccccc
Confidence            3555555555555444433  444455555555555

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.13  E-value=2.2e-07  Score=71.03  Aligned_cols=114  Identities=17%  Similarity=0.232  Sum_probs=75.2

Q ss_pred             CcEEEEEccCCccccc-----cCCCcccccCcCCcEEEccCCCCCCCC---CCccccCCccccc--cccccCCCC----C
Q 041168           53 GHVIRLDLTSSCLYGS-----INSSSSLFQLVHLEWLVLSNNHFNFSE---IPSEIKNLSRLTA--LSNPSFFGQ----I  118 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~-----~~~~~~l~~l~~L~~L~Ls~n~l~~~~---~p~~~~~l~~L~~--ls~n~l~~~----~  118 (177)
                      ..++.|++++|.+...     +..  .+..+++|+.|++++|.++...   +...+...++|++  +++|.+.+.    +
T Consensus       186 ~~L~~L~L~~n~i~~~g~~~~l~~--~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l  263 (344)
T d2ca6a1         186 RLLHTVKMVQNGIRPEGIEHLLLE--GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV  263 (344)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHHHT--TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred             hhhcccccccccccccccccchhh--hhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHH
Confidence            4688899998887632     334  4677888999999999875310   2245667788888  889888643    1


Q ss_pred             ChhhhC--CCCCCEEeCCCCcCCcccCCCchhHHhh-cCCCCCEEEeecccCCC
Q 041168          119 PAELLE--LSDLESLDLSFNNFHLKLQGPSLANLAE-KLANLKVLHLGQVNTAS  169 (177)
Q Consensus       119 p~~~~~--l~~L~~L~Ls~N~~~l~~~~~~~p~~~~-~l~~L~~L~Ls~N~l~g  169 (177)
                      -..+..  .+.|++|++++|++..+. ...+...+. ++++|++|+|++|.+..
T Consensus       264 ~~~l~~~~~~~L~~L~ls~N~i~~~~-~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         264 VDAFSKLENIGLQTLRLQYNEIELDA-VRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHHHTCSSCCCCEEECCSSCCBHHH-HHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             HHHhhhccCCCCCEEECCCCcCChHH-HHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            122333  367999999999532100 012334443 57889999999998864

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=8.4e-07  Score=60.93  Aligned_cols=82  Identities=22%  Similarity=0.210  Sum_probs=56.7

Q ss_pred             cccCcCCcEEEccCCCCCCCC-CCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCch----
Q 041168           75 LFQLVHLEWLVLSNNHFNFSE-IPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSL----  147 (177)
Q Consensus        75 l~~l~~L~~L~Ls~n~l~~~~-~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~----  147 (177)
                      ...++.|++|+|++|+++... ++..+..+++|+.  +++|.+....+-.......|+.|++++|++.     ...    
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~-----~~~~~~~  135 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS-----DTFRDQS  135 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS-----SSSSSHH
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC-----cCcccch
Confidence            356788999999999998530 1344667888998  9999987432223345567899999999542     221    


Q ss_pred             ---hHHhhcCCCCCEEE
Q 041168          148 ---ANLAEKLANLKVLH  161 (177)
Q Consensus       148 ---p~~~~~l~~L~~L~  161 (177)
                         ...+..+|+|+.||
T Consensus       136 ~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         136 TYISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHHTTSTTCCEET
T ss_pred             hHHHHHHHHCCCCCEEC
Confidence               23366789999886

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=4e-06  Score=62.44  Aligned_cols=107  Identities=18%  Similarity=0.196  Sum_probs=51.2

Q ss_pred             CcEEEEEccCC-ccccc-cCCCccccc-CcCCcEEEccCCC--CCCCCCCccccCCccccc--cccc-cCCCCCChhhhC
Q 041168           53 GHVIRLDLTSS-CLYGS-INSSSSLFQ-LVHLEWLVLSNNH--FNFSEIPSEIKNLSRLTA--LSNP-SFFGQIPAELLE  124 (177)
Q Consensus        53 ~~l~~L~l~~n-~l~~~-~~~~~~l~~-l~~L~~L~Ls~n~--l~~~~~p~~~~~l~~L~~--ls~n-~l~~~~p~~~~~  124 (177)
                      +++++|+++++ .+++. +..  .+.. .+.|+.|+++++.  ++...+...+..+++|++  +++| .+++.....+..
T Consensus       121 ~~L~~L~ls~c~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~  198 (284)
T d2astb2         121 SRLDELNLSWCFDFTEKHVQV--AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ  198 (284)
T ss_dssp             TTCCEEECCCCTTCCHHHHHH--HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG
T ss_pred             Hhccccccccccccccccchh--hhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcc
Confidence            46777777764 33321 111  1222 3456666666532  221101122234556666  5554 344344455566


Q ss_pred             CCCCCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecc
Q 041168          125 LSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQV  165 (177)
Q Consensus       125 l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N  165 (177)
                      +++|++|+++++. .+   +..-...++.+++|+.|+++++
T Consensus       199 ~~~L~~L~L~~C~-~i---~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         199 LNYLQHLSLSRCY-DI---IPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CTTCCEEECTTCT-TC---CGGGGGGGGGCTTCCEEECTTS
T ss_pred             cCcCCEEECCCCC-CC---ChHHHHHHhcCCCCCEEeeeCC
Confidence            6666666666642 22   2223334555666666666554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=8.6e-07  Score=60.89  Aligned_cols=76  Identities=21%  Similarity=0.215  Sum_probs=57.5

Q ss_pred             CcEEEEEccCCccccc--cCCCcccccCcCCcEEEccCCCCCCCCCCc-cccCCccccc--cccccCCCCCCh-------
Q 041168           53 GHVIRLDLTSSCLYGS--INSSSSLFQLVHLEWLVLSNNHFNFSEIPS-EIKNLSRLTA--LSNPSFFGQIPA-------  120 (177)
Q Consensus        53 ~~l~~L~l~~n~l~~~--~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~-~~~~l~~L~~--ls~n~l~~~~p~-------  120 (177)
                      +++++|++++|+++..  ++.  .+..+++|+.|++++|.++.  +++ .+.....|+.  +++|.+......       
T Consensus        65 ~~L~~L~Ls~N~i~~l~~~~~--~~~~l~~L~~L~Ls~N~i~~--l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~  140 (162)
T d1koha1          65 PELLSLNLSNNRLYRLDDMSS--IVQKAPNLKILNLSGNELKS--ERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA  140 (162)
T ss_dssp             TTCCCCCCCSSCCCCCSGGGT--HHHHSTTCCCCCCTTSCCCC--GGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred             CCCCEeeCCCccccCCchhHH--HHhhCCcccccccccCcccc--chhhhhhhccccceeecCCCCcCcCcccchhHHHH
Confidence            6899999999999853  234  56789999999999999994  443 2333456777  999999765442       


Q ss_pred             hhhCCCCCCEEe
Q 041168          121 ELLELSDLESLD  132 (177)
Q Consensus       121 ~~~~l~~L~~L~  132 (177)
                      .+..+|+|+.||
T Consensus       141 i~~~~P~L~~LD  152 (162)
T d1koha1         141 IRERFPKLLRLD  152 (162)
T ss_dssp             HHTTSTTCCEET
T ss_pred             HHHHCCCCCEEC
Confidence            256789999986

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=97.86  E-value=2.5e-05  Score=58.53  Aligned_cols=76  Identities=25%  Similarity=0.254  Sum_probs=57.7

Q ss_pred             cCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhhcCCC
Q 041168           79 VHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLAN  156 (177)
Q Consensus        79 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~  156 (177)
                      .++++|+|+++.++ . +|+.   +++|++  +++|++. .+|..   +.+|+.|++++|.  +    ..++.   -.+.
T Consensus        38 ~~l~~LdLs~~~L~-~-lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~--l----~~l~~---lp~~   99 (353)
T d1jl5a_          38 RQAHELELNNLGLS-S-LPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNN--L----KALSD---LPPL   99 (353)
T ss_dssp             HTCSEEECTTSCCS-C-CCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSC--C----SCCCS---CCTT
T ss_pred             cCCCEEEeCCCCCC-C-CCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcc--c----chhhh---hccc
Confidence            46899999999998 4 7864   457788  9999998 77764   4689999999994  3    22332   1247


Q ss_pred             CCEEEeecccCCCCCCc
Q 041168          157 LKVLHLGQVNTASTVPY  173 (177)
Q Consensus       157 L~~L~Ls~N~l~g~~p~  173 (177)
                      |++|++++|.+. .+|.
T Consensus       100 L~~L~L~~n~l~-~lp~  115 (353)
T d1jl5a_         100 LEYLGVSNNQLE-KLPE  115 (353)
T ss_dssp             CCEEECCSSCCS-SCCC
T ss_pred             cccccccccccc-cccc
Confidence            999999999998 4664

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.77  E-value=2.8e-06  Score=64.66  Aligned_cols=89  Identities=16%  Similarity=0.132  Sum_probs=52.5

Q ss_pred             cccCcCCcEEEccCCCCCCCC----CCccccCCccccc--cccccCCCC----CChhhhCCCCCCEEeCCCCcCCcccCC
Q 041168           75 LFQLVHLEWLVLSNNHFNFSE----IPSEIKNLSRLTA--LSNPSFFGQ----IPAELLELSDLESLDLSFNNFHLKLQG  144 (177)
Q Consensus        75 l~~l~~L~~L~Ls~n~l~~~~----~p~~~~~l~~L~~--ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~~~l~~~~  144 (177)
                      +...+.|+.|++++|.+....    +...+...++|+.  +++|.+...    +...+..+++|++|+|++|.  +   +
T Consensus       182 l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~--i---~  256 (344)
T d2ca6a1         182 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL--L---S  256 (344)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC--C---C
T ss_pred             hhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCc--c---C
Confidence            345567777888777765210    1123455666777  777776421    23445677778888888883  3   2


Q ss_pred             Cc----hhHHhhc--CCCCCEEEeecccCC
Q 041168          145 PS----LANLAEK--LANLKVLHLGQVNTA  168 (177)
Q Consensus       145 ~~----~p~~~~~--l~~L~~L~Ls~N~l~  168 (177)
                      ..    +...+..  .+.|++|++++|.|.
T Consensus       257 ~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         257 ARGAAAVVDAFSKLENIGLQTLRLQYNEIE  286 (344)
T ss_dssp             HHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             chhhHHHHHHhhhccCCCCCEEECCCCcCC
Confidence            21    2233333  356788888888765

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=9.3e-07  Score=68.80  Aligned_cols=15  Identities=53%  Similarity=0.567  Sum_probs=7.4

Q ss_pred             hhCCCCCCEEeCCCC
Q 041168          122 LLELSDLESLDLSFN  136 (177)
Q Consensus       122 ~~~l~~L~~L~Ls~N  136 (177)
                      +..+++|++|+|++|
T Consensus       393 l~~~~~L~~L~Ls~N  407 (460)
T d1z7xw1         393 LLANHSLRELDLSNN  407 (460)
T ss_dssp             HHHCCCCCEEECCSS
T ss_pred             HhcCCCCCEEECCCC
Confidence            334455555555555

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.55  E-value=2.2e-05  Score=53.85  Aligned_cols=109  Identities=9%  Similarity=0.057  Sum_probs=73.9

Q ss_pred             CcEEEEEccCC-ccccc----cCCCcccccCcCCcEEEccCCCCCCC---CCCccccCCccccc--cccccCCCC----C
Q 041168           53 GHVIRLDLTSS-CLYGS----INSSSSLFQLVHLEWLVLSNNHFNFS---EIPSEIKNLSRLTA--LSNPSFFGQ----I  118 (177)
Q Consensus        53 ~~l~~L~l~~n-~l~~~----~~~~~~l~~l~~L~~L~Ls~n~l~~~---~~p~~~~~l~~L~~--ls~n~l~~~----~  118 (177)
                      ++++.|+|+++ .+...    +..  .+...++|++|+|++|.+...   .+...+...+.|+.  +++|.+...    +
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~--~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIE--AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHH--HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHH--HHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            67999999874 46532    223  455668899999999988632   02234555677888  899988632    2


Q ss_pred             ChhhhCCCCCCEEeCCCCcCCcccCCC-----chhHHhhcCCCCCEEEeeccc
Q 041168          119 PAELLELSDLESLDLSFNNFHLKLQGP-----SLANLAEKLANLKVLHLGQVN  166 (177)
Q Consensus       119 p~~~~~l~~L~~L~Ls~N~~~l~~~~~-----~~p~~~~~l~~L~~L~Ls~N~  166 (177)
                      -..+...++|++|++++|.+..   .+     .+...+...++|+.|+++.+.
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~~---~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQSV---LGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCC---CCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHhCCcCCEEECCCCcCCC---ccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            2346677889999999883221   11     245667778999999997764

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.90  E-value=0.00018  Score=49.03  Aligned_cols=92  Identities=11%  Similarity=0.041  Sum_probs=61.7

Q ss_pred             ccCcCCcEEEccCC-CCCCCC---CCccccCCccccc--cccccCCC----CCChhhhCCCCCCEEeCCCCcCCcccCCC
Q 041168           76 FQLVHLEWLVLSNN-HFNFSE---IPSEIKNLSRLTA--LSNPSFFG----QIPAELLELSDLESLDLSFNNFHLKLQGP  145 (177)
Q Consensus        76 ~~l~~L~~L~Ls~n-~l~~~~---~p~~~~~l~~L~~--ls~n~l~~----~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~  145 (177)
                      .+.+.|++|+|+++ .++...   +-..+...+.|++  +++|.+..    .+...+...+.|++|+|++|.|.-++ ..
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g-~~   90 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL-LA   90 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH-HH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHH-HH
Confidence            34578999999974 454210   1134556677888  99998863    23345667789999999999543200 01


Q ss_pred             chhHHhhcCCCCCEEEeecccCC
Q 041168          146 SLANLAEKLANLKVLHLGQVNTA  168 (177)
Q Consensus       146 ~~p~~~~~l~~L~~L~Ls~N~l~  168 (177)
                      .+...+...++|++|++++|.+.
T Consensus        91 ~l~~aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          91 RLLRSTLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSC
T ss_pred             HHHHHHHhCCcCCEEECCCCcCC
Confidence            23445677789999999998765

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.52  E-value=0.00033  Score=47.45  Aligned_cols=113  Identities=12%  Similarity=0.085  Sum_probs=71.6

Q ss_pred             CCcEEEEEccC-Cccccc----cCCCcccccCcCCcEEEccCCCCCCCC---CCccccCCccccc--cccccCCCC----
Q 041168           52 NGHVIRLDLTS-SCLYGS----INSSSSLFQLVHLEWLVLSNNHFNFSE---IPSEIKNLSRLTA--LSNPSFFGQ----  117 (177)
Q Consensus        52 ~~~l~~L~l~~-n~l~~~----~~~~~~l~~l~~L~~L~Ls~n~l~~~~---~p~~~~~l~~L~~--ls~n~l~~~----  117 (177)
                      .+.++.|++++ +.++..    +..  .+...++|++|++++|.++...   +-..+...+.++.  +++|.+...    
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~--al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAE--ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHH--HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHH--HHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            36899999987 456432    223  4557789999999999886420   1123445567777  777776522    


Q ss_pred             CChhhhCCCCCCEEeCC--CCcCCcccCCCchhHHhhcCCCCCEEEeecccC
Q 041168          118 IPAELLELSDLESLDLS--FNNFHLKLQGPSLANLAEKLANLKVLHLGQVNT  167 (177)
Q Consensus       118 ~p~~~~~l~~L~~L~Ls--~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l  167 (177)
                      +...+...++|+.++|+  .|.+.-++ ...+...+...++|+.|+++.+..
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~-~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNV-EMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHH-HHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHH-HHHHHHHHHhCCCcCEEeCcCCCC
Confidence            22456677889886664  55321100 013556677889999999987653

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=92.75  E-value=0.013  Score=39.06  Aligned_cols=92  Identities=14%  Similarity=0.038  Sum_probs=59.0

Q ss_pred             ccCcCCcEEEccC-CCCCCCC---CCccccCCccccc--cccccCCCC----CChhhhCCCCCCEEeCCCCcCCcccCCC
Q 041168           76 FQLVHLEWLVLSN-NHFNFSE---IPSEIKNLSRLTA--LSNPSFFGQ----IPAELLELSDLESLDLSFNNFHLKLQGP  145 (177)
Q Consensus        76 ~~l~~L~~L~Ls~-n~l~~~~---~p~~~~~l~~L~~--ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~~~l~~~~~  145 (177)
                      .+.+.|++|++++ +.++...   +-..+...++|+.  +++|.+...    +-..+...++++.+++++|.+.-++ ..
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g-~~   92 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG-IL   92 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH-HH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchh-HH
Confidence            4568999999997 4565320   1234556788888  999987632    2234567789999999999432100 01


Q ss_pred             chhHHhhcCCCCCEEEee--cccCC
Q 041168          146 SLANLAEKLANLKVLHLG--QVNTA  168 (177)
Q Consensus       146 ~~p~~~~~l~~L~~L~Ls--~N~l~  168 (177)
                      .+...+...++|+.++|+  +|.+.
T Consensus        93 ~l~~~l~~~~~L~~l~L~l~~n~i~  117 (166)
T d1io0a_          93 ALVEALQSNTSLIELRIDNQSQPLG  117 (166)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             HHHHHHHhCccccEEeeccCCCcCc
Confidence            234556788899986664  55553