Citrus Sinensis ID: 041181

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380------
MALKLFFLKTSPILIALLFFAYPSCSAADVDPTTPVPPETICMYTPNPSDCKSVLPAASPNQTADTYTYCRLSIRKALTQTQKFLNSVDNYLKSGSTLSIGAIRALEDCRLLADLNMDYLSTSYQTANATSQILPAIQADDVQALLSAILTNQQTCFDGLQASANSSESINNGLSVPLLEDIKLSSVLLALFKKGWIGDQKKIITSWQPSSTQRLVGQNGRLPLVMSDRIRSIYESAVRGRKLTSTGDGDQGVLVTDIITVAQDGSGNFSTITDAINFAPNNTNVSNGYFLIYITAGVYQEYVSIPKNKINLLMIGDGINQTIITGNRSVADGWTTFNSATFSVVAPNFVASSITFRNTAGPSKGQAAALRSGADFSTFYSCSFEG
ccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHccccHHHHcccccccHHHHHHccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccEEEEccccccccccHHHHHHHccccccccccEEEEEEEcEEEEEEEEEccccccEEEEEEcccccEEEEccccccccccccEEEEEEEcccEEEEccEEEEccccccccEEEEEEcccEEEEEccEEEc
cHHHHHHHHHHHHHHHHHHHHccHccccccccccHHHHHHHHcccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHcccccccEEEcccccccccccccEEEEEccccccccHHHHHHHccccccccccEEEEEEccEEEEccEEEccccccEEEEEcccccEEEEEccccccccccHHHccEEEcccccEEEEEEEEEcccHHHcccccEEEccccEEEEEEcccc
MALKLFFLKTSPILIALLFFaypscsaadvdpttpvppeticmytpnpsdcksvlpaaspnqtadtytYCRLSIRKALTQTQKFLNSVDNYlksgstlsiGAIRALEDCRLLADLNMDYLSTSYqtanatsqilpaiQADDVQALLSAILTNQQTCfdglqasanssesinnglsvplledIKLSSVLLALFKKGWIGDQKKIItswqpsstqrlvgqngrlplvMSDRIRSIYESAVrgrkltstgdgdqgvLVTDIITvaqdgsgnfstITDAinfapnntnvsnGYFLIYITAGVYQeyvsipknkiNLLMigdginqtiitgnrsvadgwttfnsatfsvvapnfvassitfrntagpskgQAAALrsgadfstfyscsfeg
MALKLFFLKTSPILIALLFFAYPSCSAADVDPTTPVPPETICMYTPNPSDCKSVLPAASPNQTADTYTYCRLSIRKALTQTQKFLNSVDNYLKSGSTLSIGAIRALEDCRLLADLNMDYLSTSYQTANATSQILPAIQADDVQALLSAILTNQQTCFDGLQASANSSESINNGLSVPLLEDIKLSSVLLALFKKGWIGDQKKiitswqpsstqrlvgqngrlplvMSDRIRSIYESavrgrkltstgdgdqgvlVTDIITVAQDGSGNFSTITDAINFAPNNTNVSNGYFLIYITAGVYQEYVSIPKNKINLLMIGDGINQTIITGNRSVADGWTTFNSATFSVVAPNFVASSITFRNTAGPSKGQAAALRSGADFSTFYSCSFEG
MALKLFFLKTSPILIALLFFAYPSCSaadvdpttpvppETICMYTPNPSDCKSVLPAASPNQTADTYTYCRLSIRKALTQTQKFLNSVDNYLKSGSTLSIGAIRALEDCRLLADLNMDYLSTSYQTANATSQILPAIQADDVQALLSAILTNQQTCFDGLQASANSSESINNGLSVPLLEDIKLSSVLLALFKKGWIGDQKKIITSWQPSSTQRLVGQNGRLPLVMSDRIRSIYESAVRGRKLTSTGDGDQGVLVTDIITVAQDGSGNFSTITDAINFAPNNTNVSNGYFLIYITAGVYQEYVSIPKNKINLLMIGDGINQTIITGNRSVADGWTTFNSATFSVVAPNFVASSITFRNTAGPSKGQAAALRSGADFSTFYSCSFEG
**LKLFFLKTSPILIALLFFAYPSCSAADVDPTTPVPPETICMYTP****************TADTYTYCRLSIRKALTQTQKFLNSVDNYLKSGSTLSIGAIRALEDCRLLADLNMDYLSTSYQTANATSQILPAIQADDVQALLSAILTNQQTCFDGLQA*******INNGLSVPLLEDIKLSSVLLALFKKGWIGDQKKIITSWQPSSTQRLVGQNGRLPLVMSDRIRSIYESAVRGRKLTSTGDGDQGVLVTDIITVAQDGSGNFSTITDAINFAPNNTNVSNGYFLIYITAGVYQEYVSIPKNKINLLMIGDGINQTIITGNRSVADGWTTFNSATFSVVAPNFVASSITFRN*******************TFY******
**LKLFFLKTSPILIALLFFAY******************ICMYTPNPSDCK*****************CRLSIRKALTQTQKFL******************RALEDCRLLADLNMDYLSTSYQ************QADDVQALLSAILTNQQTCFDGLQASANS*ESI**GLSVPLLEDIKLSSVLLALFKKGWI***************************VMSDRIRSIYESAVRGRK********QGVLVTDIITVAQDGSGNFSTITDAINFAPNNTNVSNGYFLIYITAGVYQEYVSIPKNKINLLMIGDGINQTIITGNRSVADGWTTFNSATFSVVAPNFVASSITFRNTAGPSKGQAAALRSGADFSTFYSCSFEG
MALKLFFLKTSPILIALLFFAYPSCSAADVDPTTPVPPETICMYTPNPSDCKSVLPAASPNQTADTYTYCRLSIRKALTQTQKFLNSVDNYLKSGSTLSIGAIRALEDCRLLADLNMDYLSTSYQTANATSQILPAIQADDVQALLSAILTNQQTCFDGLQASANSSESINNGLSVPLLEDIKLSSVLLALFKKGWIGDQKKIITSWQPSSTQRLVGQNGRLPLVMSDRIRSIYESAVRGRKLTSTGDGDQGVLVTDIITVAQDGSGNFSTITDAINFAPNNTNVSNGYFLIYITAGVYQEYVSIPKNKINLLMIGDGINQTIITGNRSVADGWTTFNSATFSVVAPNFVASSITFRNT***********RSGADFSTFYSCSFEG
MALKLFFLKTSPILIALLFFAYPSCS****DPTTPVPPETICMYTPNPSDCKSVLPAASPNQTADTYTYCRLSIRKALTQTQKFLNSVDNYLKSGSTLSIGAIRALEDCRLLADLNMDYLSTSYQTANATSQILPAIQADDVQALLSAILTNQQTCFDGLQASANSSESINNGLSVPLLEDIKLSSVLLALFKKGWIGD**********************LPLVMSDRIRSIYESAVRGRKLTSTGDGDQGVLVTDIITVAQDGSGNFSTITDAINFAPNNTNVSNGYFLIYITAGVYQEYVSIPKNKINLLMIGDGINQTIITGNRSVADGWTTFNSATFSVVAPNFVASSITFRNTAGPSKGQAAALRSGADFSTFYSCSFE*
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iiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MALKLFFLKTSPILIALLFFAYPSCSAADVDPTTPVPPETICMYTPNPSDCKSVLPAASPNQTADTYTYCRLSIRKALTQTQKFLNSVDNYLKSGSTLSIGAIRALEDCRLLADLNMDYLSTSYQTANATSQILPAIQADDVQALLSAILTNQQTCFDGLQASANSSESINNGLSVPLLEDIKLSSVLLALFKKGWIGDQKKIITSWQPSSTQRLVGQNGRLPLVMSDRIRSIYESAVRGRKLTSTGDGDQGVLVTDIITVAQDGSGNFSTITDAINFAPNNTNVSNGYFLIYITAGVYQEYVSIPKNKINLLMIGDGINQTIITGNRSVADGWTTFNSATFSVVAPNFVASSITFRNTAGPSKGQAAALRSGADFSTFYSCSFEG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query386 2.2.26 [Sep-21-2011]
Q8RXK7 573 Probable pectinesterase/p yes no 0.958 0.645 0.511 1e-102
Q9SRX4 579 Probable pectinesterase/p no no 0.943 0.628 0.530 1e-100
O22256 560 Probable pectinesterase/p no no 0.955 0.658 0.502 6e-93
Q94CB1 619 Probable pectinesterase/p no no 0.857 0.534 0.392 8e-59
Q9FF77 624 Probable pectinesterase/p no no 0.870 0.538 0.369 3e-58
Q43062 522 Pectinesterase/pectineste N/A no 0.743 0.549 0.362 2e-40
O48711 547 Probable pectinesterase/p no no 0.829 0.585 0.346 1e-38
O49298 554 Probable pectinesterase/p no no 0.862 0.601 0.348 1e-38
O49006 592 Pectinesterase/pectineste no no 0.893 0.582 0.337 1e-37
P83948 584 Pectinesterase 3 OS=Citru no no 0.645 0.426 0.369 2e-37
>sp|Q8RXK7|PME41_ARATH Probable pectinesterase/pectinesterase inhibitor 41 OS=Arabidopsis thaliana GN=PME41 PE=2 SV=2 Back     alignment and function desciption
 Score =  372 bits (956), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 205/401 (51%), Positives = 271/401 (67%), Gaps = 31/401 (7%)

Query: 1   MALKLFFLKTSPILIALLFFA----YPSCSAADVDPTTPVPPETICMYTPNPSDCKSVLP 56
           ++LKLF L T  + +  LF A     PS S++           TIC  TP+P  CKSV P
Sbjct: 2   LSLKLF-LVTLFLSLQTLFIASQTLLPSNSSS-----------TICKTTPDPKFCKSVFP 49

Query: 57  AASPNQTADTYTYCRLSIRKALTQTQKFLNSVDNYLK-SGSTLSIGAIRALEDCRLLADL 115
             S     D   Y R S+RK+LTQ++KF  ++D YLK + + LS  A+ AL+DCR LA L
Sbjct: 50  QTSQ---GDVREYGRFSLRKSLTQSRKFTRTIDRYLKRNNALLSQSAVGALQDCRYLASL 106

Query: 116 NMDYLSTSYQTANAT--SQILPAIQADDVQALLSAILTNQQTCFDGLQASANSSESINNG 173
             DYL TS++T N T  S+ L   +AD++Q LLSA LTN+QTC DG+  +A+SS +I NG
Sbjct: 107 TTDYLITSFETVNITTSSKTLSFSKADEIQTLLSAALTNEQTCLDGINTAASSSWTIRNG 166

Query: 174 LSVPLLEDIKLSSVLLALFKKGWIGDQKKIITSW---QPSSTQRLVG-----QNGRLPLV 225
           +++PL+ D KL SV LALF KGW+  +KK + S+    P +T          +NG LPL 
Sbjct: 167 VALPLINDTKLFSVSLALFTKGWVPKKKKQVASYSWAHPKNTHSHTKPFRHFRNGALPLK 226

Query: 226 MSDRIRSIYESAVRGRKLTSTGDGDQGVLVTDIITVAQDGSGNFSTITDAINFAPNNTNV 285
           M++  R++YES  R RKL    +    VLV+DI+TV Q+G+GNF+TIT+A+N APN T+ 
Sbjct: 227 MTEHTRAVYESLSR-RKLADDDNDVNTVLVSDIVTVNQNGTGNFTTITEAVNSAPNKTDG 285

Query: 286 SNGYFLIYITAGVYQEYVSIPKNKINLLMIGDGINQTIITGNRSVADGWTTFNSATFSVV 345
           + GYF+IY+T+GVY+E V I KNK  L+MIGDGIN+T++TGNR+V DGWTTFNSATF+V 
Sbjct: 286 TAGYFVIYVTSGVYEENVVIAKNKRYLMMIGDGINRTVVTGNRNVVDGWTTFNSATFAVT 345

Query: 346 APNFVASSITFRNTAGPSKGQAAALRSGADFSTFYSCSFEG 386
           +PNFVA ++TFRNTAGP K QA A+RS AD S FYSCSFE 
Sbjct: 346 SPNFVAVNMTFRNTAGPEKHQAVAMRSSADLSIFYSCSFEA 386
Acts in the modification of cell walls via demethylesterification of cell wall pectin.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1
>sp|Q9SRX4|PME7_ARATH Probable pectinesterase/pectinesterase inhibitor 7 OS=Arabidopsis thaliana GN=PME7 PE=2 SV=1 Back     alignment and function description
>sp|O22256|PME20_ARATH Probable pectinesterase/pectinesterase inhibitor 20 OS=Arabidopsis thaliana GN=PME20 PE=2 SV=2 Back     alignment and function description
>sp|Q94CB1|PME25_ARATH Probable pectinesterase/pectinesterase inhibitor 25 OS=Arabidopsis thaliana GN=PME25 PE=2 SV=1 Back     alignment and function description
>sp|Q9FF77|PME47_ARATH Probable pectinesterase/pectinesterase inhibitor 47 OS=Arabidopsis thaliana GN=PME47 PE=2 SV=1 Back     alignment and function description
>sp|Q43062|PME_PRUPE Pectinesterase/pectinesterase inhibitor PPE8B OS=Prunus persica PE=2 SV=1 Back     alignment and function description
>sp|O48711|PME12_ARATH Probable pectinesterase/pectinesterase inhibitor 12 OS=Arabidopsis thaliana GN=PME12 PE=2 SV=1 Back     alignment and function description
>sp|O49298|PME6_ARATH Probable pectinesterase/pectinesterase inhibitor 6 OS=Arabidopsis thaliana GN=PME6 PE=2 SV=1 Back     alignment and function description
>sp|O49006|PME3_ARATH Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana GN=PME3 PE=2 SV=2 Back     alignment and function description
>sp|P83948|PME3_CITSI Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query386
224128446 560 predicted protein [Populus trichocarpa] 0.935 0.644 0.613 1e-121
224068368 558 predicted protein [Populus trichocarpa] 0.963 0.666 0.616 1e-120
255564230 566 Pectinesterase-2 precursor, putative [Ri 0.914 0.623 0.623 1e-120
356505590 556 PREDICTED: probable pectinesterase/pecti 0.896 0.622 0.609 1e-112
356572750 555 PREDICTED: probable pectinesterase/pecti 0.896 0.623 0.603 1e-112
356503911 615 PREDICTED: LOW QUALITY PROTEIN: probable 0.971 0.609 0.568 1e-111
356536715 559 PREDICTED: probable pectinesterase/pecti 0.940 0.649 0.583 1e-110
356570974 610 PREDICTED: probable pectinesterase/pecti 0.888 0.562 0.590 1e-109
357442409 556 Pectinesterase [Medicago truncatula] gi| 0.891 0.618 0.590 1e-109
119507465 564 pectin methylesterase 3 [Pyrus communis] 0.971 0.664 0.562 1e-107
>gi|224128446|ref|XP_002320332.1| predicted protein [Populus trichocarpa] gi|222861105|gb|EEE98647.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 229/373 (61%), Positives = 285/373 (76%), Gaps = 12/373 (3%)

Query: 14  LIALLFFAYPSCSAADVDPTTPVPPETICMYTPNPSDCKSVLPAASPNQTADTYTYCRLS 73
           ++ L F A PS   ADV  + PV P T+C  TP+PS CKSVLP     Q+ + Y   RL 
Sbjct: 14  VVFLPFLASPSL--ADVPSSDPVSPGTLCKDTPDPSFCKSVLPV----QSTNVYDSARLC 67

Query: 74  IRKALTQTQKFLNSVDNYLKSGSTLSIGAIRALEDCRLLADLNMDYLSTSYQTANATSQI 133
           +RK+L+Q++KFLN V+ YL   STLS+ AIRALEDC+ LA+LNM++L +S+QT NATS+ 
Sbjct: 68  VRKSLSQSRKFLNLVNEYLSRRSTLSVAAIRALEDCQFLANLNMEFLLSSFQTVNATSKT 127

Query: 134 LPAIQADDVQALLSAILTNQQTCFDGLQASANSSESINNGLSVPLLEDIKLSSVLLALFK 193
           LP++QAD+VQ LLSAILTNQQTC DGLQA++ S+ S++N LSVPL  D KL SV LA F 
Sbjct: 128 LPSLQADNVQTLLSAILTNQQTCLDGLQATS-SASSVSNDLSVPLSNDTKLYSVSLAFFT 186

Query: 194 KGWIGDQKKIITSWQPSSTQRLVGQNGRLPLVMSDRIRSIYESAVRGRKLTSTGDGDQGV 253
           +GW+  +KK  ++WQP S Q    ++GRLP+ MS R R+IYES V  RKL  T + D  +
Sbjct: 187 EGWV-PKKKRGSTWQPKSKQ-FAFRHGRLPMKMSARTRAIYES-VSTRKLLQTVNND--I 241

Query: 254 LVTDIITVAQDGSGNFSTITDAINFAPNNTNVSNGYFLIYITAGVYQEYVSIPKNKINLL 313
            V+DI+TV+QDG GNF+TI DA+  APNNT+ SNGYF+IY+TAG+Y+EYVSI KNK  L+
Sbjct: 242 EVSDIVTVSQDGQGNFTTINDAVAAAPNNTDGSNGYFMIYVTAGIYEEYVSIAKNKKYLM 301

Query: 314 MIGDGINQTIITGNRSVADGWTTFNSATFSVVAPNFVASSITFRNTAGPSKGQAAALRSG 373
           M+GDGINQT+ITGNRSV DGWTTFNSATF+VVAPNFVA +ITFRNTAG  K QA A+RSG
Sbjct: 302 MVGDGINQTVITGNRSVVDGWTTFNSATFAVVAPNFVAVNITFRNTAGAVKHQAVAVRSG 361

Query: 374 ADFSTFYSCSFEG 386
           AD S FY CSFEG
Sbjct: 362 ADLSAFYGCSFEG 374

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224068368|ref|XP_002302726.1| predicted protein [Populus trichocarpa] gi|222844452|gb|EEE81999.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255564230|ref|XP_002523112.1| Pectinesterase-2 precursor, putative [Ricinus communis] gi|223537674|gb|EEF39297.1| Pectinesterase-2 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356505590|ref|XP_003521573.1| PREDICTED: probable pectinesterase/pectinesterase inhibitor 41-like [Glycine max] Back     alignment and taxonomy information
>gi|356572750|ref|XP_003554529.1| PREDICTED: probable pectinesterase/pectinesterase inhibitor 41-like [Glycine max] Back     alignment and taxonomy information
>gi|356503911|ref|XP_003520743.1| PREDICTED: LOW QUALITY PROTEIN: probable pectinesterase/pectinesterase inhibitor 7-like [Glycine max] Back     alignment and taxonomy information
>gi|356536715|ref|XP_003536881.1| PREDICTED: probable pectinesterase/pectinesterase inhibitor 41-like [Glycine max] Back     alignment and taxonomy information
>gi|356570974|ref|XP_003553657.1| PREDICTED: probable pectinesterase/pectinesterase inhibitor 7-like [Glycine max] Back     alignment and taxonomy information
>gi|357442409|ref|XP_003591482.1| Pectinesterase [Medicago truncatula] gi|357442459|ref|XP_003591507.1| Pectinesterase [Medicago truncatula] gi|355480530|gb|AES61733.1| Pectinesterase [Medicago truncatula] gi|355480555|gb|AES61758.1| Pectinesterase [Medicago truncatula] Back     alignment and taxonomy information
>gi|119507465|dbj|BAF42040.1| pectin methylesterase 3 [Pyrus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query386
TAIR|locus:2133224 573 ATPMEPCRB [Arabidopsis thalian 0.955 0.643 0.510 5.3e-95
TAIR|locus:2062013 560 AT2G47550 [Arabidopsis thalian 0.955 0.658 0.507 1.5e-92
TAIR|locus:2024750 579 AT1G02810 [Arabidopsis thalian 0.945 0.630 0.486 1.8e-80
TAIR|locus:2103212 619 AT3G10720 [Arabidopsis thalian 0.862 0.537 0.397 7.5e-57
TAIR|locus:2175334 624 AT5G04970 [Arabidopsis thalian 0.870 0.538 0.369 2.3e-55
TAIR|locus:2066195 547 AT2G26440 [Arabidopsis thalian 0.370 0.261 0.513 1.1e-42
TAIR|locus:2201230 554 AT1G23200 [Arabidopsis thalian 0.860 0.599 0.364 4.2e-40
TAIR|locus:2091000 592 PME3 "pectin methylesterase 3" 0.867 0.565 0.343 2.9e-39
TAIR|locus:2084751 527 AT3G43270 [Arabidopsis thalian 0.349 0.256 0.524 3.2e-39
TAIR|locus:2133219 518 AT4G02320 [Arabidopsis thalian 0.321 0.239 0.503 8.5e-39
TAIR|locus:2133224 ATPMEPCRB [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 945 (337.7 bits), Expect = 5.3e-95, P = 5.3e-95
 Identities = 196/384 (51%), Positives = 259/384 (67%)

Query:    13 ILIALLFFAYPSCSXXXXXXXXXXXXETICMYTPNPSDCKSVLPAASPNQTADTYTYCRL 72
             + +  LF +  +               TIC  TP+P  CKSV P  S     D   Y R 
Sbjct:     6 LFLVTLFLSLQTLFIASQTLLPSNSSSTICKTTPDPKFCKSVFPQTSQG---DVREYGRF 62

Query:    73 SIRKALTQTQKFLNSVDNYLK-SGSTLSIGAIRALEDCRLLADLNMDYLSTSYQTANAT- 130
             S+RK+LTQ++KF  ++D YLK + + LS  A+ AL+DCR LA L  DYL TS++T N T 
Sbjct:    63 SLRKSLTQSRKFTRTIDRYLKRNNALLSQSAVGALQDCRYLASLTTDYLITSFETVNITT 122

Query:   131 -SQILPAIQADDVQALLSAILTNQQTCFDGLQASANSSESINNGLSVPLLEDIKLSSVLL 189
              S+ L   +AD++Q LLSA LTN+QTC DG+  +A+SS +I NG+++PL+ D KL SV L
Sbjct:   123 SSKTLSFSKADEIQTLLSAALTNEQTCLDGINTAASSSWTIRNGVALPLINDTKLFSVSL 182

Query:   190 ALFKKGWIGDQKKIITS--W-QPSSTQRLVG-----QNGRLPLVMSDRIRSIYESAVRGR 241
             ALF KGW+  +KK + S  W  P +T          +NG LPL M++  R++YES  R R
Sbjct:   183 ALFTKGWVPKKKKQVASYSWAHPKNTHSHTKPFRHFRNGALPLKMTEHTRAVYESLSR-R 241

Query:   242 KLTSTGDGDQGVLVTDIITVAQDGSGNFSTITDAINFAPNNTNVSNGYFLIYITAGVYQE 301
             KL    +    VLV+DI+TV Q+G+GNF+TIT+A+N APN T+ + GYF+IY+T+GVY+E
Sbjct:   242 KLADDDNDVNTVLVSDIVTVNQNGTGNFTTITEAVNSAPNKTDGTAGYFVIYVTSGVYEE 301

Query:   302 YVSIPKNKINLLMIGDGINQTIITGNRSVADGWTTFNSATFSVVAPNFVASSITFRNTAG 361
              V I KNK  L+MIGDGIN+T++TGNR+V DGWTTFNSATF+V +PNFVA ++TFRNTAG
Sbjct:   302 NVVIAKNKRYLMMIGDGINRTVVTGNRNVVDGWTTFNSATFAVTSPNFVAVNMTFRNTAG 361

Query:   362 PSKGQAAALRSGADFSTFYSCSFE 385
             P K QA A+RS AD S FYSCSFE
Sbjct:   362 PEKHQAVAMRSSADLSIFYSCSFE 385
GO:0004857 "enzyme inhibitor activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0005618 "cell wall" evidence=IEA
GO:0030599 "pectinesterase activity" evidence=IEA;ISS;IMP
GO:0042545 "cell wall modification" evidence=IEA
GO:0009409 "response to cold" evidence=IEP
GO:0009741 "response to brassinosteroid stimulus" evidence=IEP
GO:0015824 "proline transport" evidence=RCA
TAIR|locus:2062013 AT2G47550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024750 AT1G02810 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2103212 AT3G10720 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175334 AT5G04970 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2066195 AT2G26440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2201230 AT1G23200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2091000 PME3 "pectin methylesterase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084751 AT3G43270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2133219 AT4G02320 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8RXK7PME41_ARATH3, ., 1, ., 1, ., 1, 10.51120.95850.6457yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query386
PLN02713 566 PLN02713, PLN02713, Probable pectinesterase/pectin 1e-173
PLN03043 538 PLN03043, PLN03043, Probable pectinesterase/pectin 3e-92
pfam01095 298 pfam01095, Pectinesterase, Pectinesterase 9e-64
PLN02416 541 PLN02416, PLN02416, probable pectinesterase/pectin 5e-54
PLN02201 520 PLN02201, PLN02201, probable pectinesterase/pectin 2e-47
PLN02933 530 PLN02933, PLN02933, Probable pectinesterase/pectin 2e-46
PLN02468 565 PLN02468, PLN02468, putative pectinesterase/pectin 3e-46
PLN02314 586 PLN02314, PLN02314, pectinesterase 3e-46
PLN02506 537 PLN02506, PLN02506, putative pectinesterase/pectin 2e-45
PLN02313 587 PLN02313, PLN02313, Pectinesterase/pectinesterase 5e-45
PLN02301 548 PLN02301, PLN02301, pectinesterase/pectinesterase 3e-44
PLN02745 596 PLN02745, PLN02745, Putative pectinesterase/pectin 1e-43
PLN02916 502 PLN02916, PLN02916, pectinesterase family protein 5e-42
PLN02995 539 PLN02995, PLN02995, Probable pectinesterase/pectin 2e-41
PLN02484 587 PLN02484, PLN02484, probable pectinesterase/pectin 2e-38
PLN02217 670 PLN02217, PLN02217, probable pectinesterase/pectin 1e-37
PLN02170 529 PLN02170, PLN02170, probable pectinesterase/pectin 7e-37
PLN02488 509 PLN02488, PLN02488, probable pectinesterase/pectin 4e-34
PLN02708 553 PLN02708, PLN02708, Probable pectinesterase/pectin 3e-33
PLN02990 572 PLN02990, PLN02990, Probable pectinesterase/pectin 7e-32
PLN02197 588 PLN02197, PLN02197, pectinesterase 5e-31
PLN02432 293 PLN02432, PLN02432, putative pectinesterase 6e-22
PLN02682 369 PLN02682, PLN02682, pectinesterase family protein 1e-21
PLN02497 331 PLN02497, PLN02497, probable pectinesterase 4e-21
PLN02665 366 PLN02665, PLN02665, pectinesterase family protein 9e-20
PLN02773 317 PLN02773, PLN02773, pectinesterase 1e-19
PLN02480 343 PLN02480, PLN02480, Probable pectinesterase 4e-19
pfam04043145 pfam04043, PMEI, Plant invertase/pectin methyleste 1e-17
PLN02304 379 PLN02304, PLN02304, probable pectinesterase 2e-17
PLN02698 497 PLN02698, PLN02698, Probable pectinesterase/pectin 2e-15
PLN02634 359 PLN02634, PLN02634, probable pectinesterase 2e-15
smart00856148 smart00856, PMEI, Plant invertase/pectin methylest 1e-14
PLN02176 340 PLN02176, PLN02176, putative pectinesterase 1e-12
PLN02671 359 PLN02671, PLN02671, pectinesterase 6e-12
COG4677 405 COG4677, PemB, Pectin methylesterase [Carbohydrate 6e-10
TIGR01614178 TIGR01614, PME_inhib, pectinesterase inhibitor dom 0.003
>gnl|CDD|215383 PLN02713, PLN02713, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information 
 Score =  495 bits (1275), Expect = e-173
 Identities = 234/389 (60%), Positives = 287/389 (73%), Gaps = 13/389 (3%)

Query: 1   MALKLFFLKTSPILIALLFFAYPSCSAADVDPTTPVPPETICMYTPNPSDCKSVLPAASP 60
           M+ KL  L T  +L+ L F    S SA+D  P+TPV P TIC  TP+PS CKSVLP    
Sbjct: 1   MSSKLILLTTLALLLLLFF---SSSSASDPPPSTPVSPSTICNTTPDPSFCKSVLP---H 54

Query: 61  NQTADTYTYCRLSIRKALTQTQKFLNSVDNYLKSGSTL-SIGAIRALEDCRLLADLNMDY 119
           NQ  + Y Y R S+RK+L+Q++KFL+ VD YLK  STL S  AIRALEDC+ LA LN+D+
Sbjct: 55  NQPGNVYDYGRFSVRKSLSQSRKFLSLVDRYLKRNSTLLSKSAIRALEDCQFLAGLNIDF 114

Query: 120 LSTSYQTANATSQILPAIQADDVQALLSAILTNQQTCFDGLQASANSSESINNGLSVPLL 179
           L +S++T N++S+ L   QADDVQ LLSAILTNQQTC DGLQA++ S+ S+ NGL+VPL 
Sbjct: 115 LLSSFETVNSSSKTLSDPQADDVQTLLSAILTNQQTCLDGLQAAS-SAWSVRNGLAVPLS 173

Query: 180 EDIKLSSVLLALFKKGWIGDQKK--IITSWQPSSTQRLVGQNGRLPLVMSDRIRSIYESA 237
            D KL SV LALF KGW+  +KK    T  +         +NGRLPL M+++ R++YES 
Sbjct: 174 NDTKLYSVSLALFTKGWVPKKKKGRPKTKRKAHFKPFRAFRNGRLPLKMTEKTRAVYESV 233

Query: 238 VRGRKLTSTGDGDQGVLVTDIITVAQDGSGNFSTITDAINFAPNNTNVSNGYFLIYITAG 297
            R + L    +    VLV+DI+TV Q+G+GNF+TI DA+  APNNT+ SNGYF+IY+TAG
Sbjct: 234 SRRKLLDGDANA---VLVSDIVTVNQNGTGNFTTINDAVAAAPNNTDGSNGYFVIYVTAG 290

Query: 298 VYQEYVSIPKNKINLLMIGDGINQTIITGNRSVADGWTTFNSATFSVVAPNFVASSITFR 357
           VY+EYVSIPKNK  L+MIGDGINQT+ITGNRSV DGWTTFNSATF+VV  NFVA +ITFR
Sbjct: 291 VYEEYVSIPKNKKYLMMIGDGINQTVITGNRSVVDGWTTFNSATFAVVGQNFVAVNITFR 350

Query: 358 NTAGPSKGQAAALRSGADFSTFYSCSFEG 386
           NTAGP+K QA ALRSGAD STFYSCSFE 
Sbjct: 351 NTAGPAKHQAVALRSGADLSTFYSCSFEA 379

Length = 566
>gnl|CDD|178606 PLN03043, PLN03043, Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>gnl|CDD|216297 pfam01095, Pectinesterase, Pectinesterase Back     alignment and domain information
>gnl|CDD|178037 PLN02416, PLN02416, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177852 PLN02201, PLN02201, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178521 PLN02933, PLN02933, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178087 PLN02468, PLN02468, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215179 PLN02314, PLN02314, pectinesterase Back     alignment and domain information
>gnl|CDD|215280 PLN02506, PLN02506, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177947 PLN02313, PLN02313, Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215170 PLN02301, PLN02301, pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178346 PLN02745, PLN02745, Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178504 PLN02916, PLN02916, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178574 PLN02995, PLN02995, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178102 PLN02484, PLN02484, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215114 PLN02170, PLN02170, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178106 PLN02488, PLN02488, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215535 PLN02990, PLN02990, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177848 PLN02197, PLN02197, pectinesterase Back     alignment and domain information
>gnl|CDD|178051 PLN02432, PLN02432, putative pectinesterase Back     alignment and domain information
>gnl|CDD|215367 PLN02682, PLN02682, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178113 PLN02497, PLN02497, probable pectinesterase Back     alignment and domain information
>gnl|CDD|215357 PLN02665, PLN02665, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178372 PLN02773, PLN02773, pectinesterase Back     alignment and domain information
>gnl|CDD|178098 PLN02480, PLN02480, Probable pectinesterase Back     alignment and domain information
>gnl|CDD|217858 pfam04043, PMEI, Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>gnl|CDD|215173 PLN02304, PLN02304, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178301 PLN02698, PLN02698, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215340 PLN02634, PLN02634, probable pectinesterase Back     alignment and domain information
>gnl|CDD|214860 smart00856, PMEI, Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>gnl|CDD|215117 PLN02176, PLN02176, putative pectinesterase Back     alignment and domain information
>gnl|CDD|178276 PLN02671, PLN02671, pectinesterase Back     alignment and domain information
>gnl|CDD|227022 COG4677, PemB, Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|233492 TIGR01614, PME_inhib, pectinesterase inhibitor domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 386
PLN02713 566 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02313 587 Pectinesterase/pectinesterase inhibitor 100.0
PLN02468 565 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02314 586 pectinesterase 100.0
PLN02484 587 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02990 572 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02197 588 pectinesterase 100.0
PLN02506 537 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02745 596 Putative pectinesterase/pectinesterase inhibitor 100.0
PLN02995 539 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02301 548 pectinesterase/pectinesterase inhibitor 100.0
PLN02416 541 probable pectinesterase/pectinesterase inhibitor 100.0
PLN03043 538 Probable pectinesterase/pectinesterase inhibitor; 100.0
PLN02708 553 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02201 520 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02488 509 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02933 530 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02170 529 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02916 502 pectinesterase family protein 100.0
PLN02698 497 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02671 359 pectinesterase 100.0
PLN02682 369 pectinesterase family protein 100.0
PLN02304 379 probable pectinesterase 100.0
PLN02773 317 pectinesterase 100.0
PLN02634 359 probable pectinesterase 100.0
PLN02665 366 pectinesterase family protein 100.0
PLN02497 331 probable pectinesterase 100.0
PLN02176 340 putative pectinesterase 100.0
PLN02432 293 putative pectinesterase 100.0
PF01095 298 Pectinesterase: Pectinesterase; InterPro: IPR00007 100.0
PRK10531 422 acyl-CoA thioesterase; Provisional 100.0
PLN02480 343 Probable pectinesterase 100.0
smart00856148 PMEI Plant invertase/pectin methylesterase inhibit 99.96
TIGR01614178 PME_inhib pectinesterase inhibitor domain. This mo 99.95
PF04043152 PMEI: Plant invertase/pectin methylesterase inhibi 99.93
COG4677 405 PemB Pectin methylesterase [Carbohydrate transport 99.91
TIGR03805 314 beta_helix_1 parallel beta-helix repeat-containing 99.1
PF07602 246 DUF1565: Protein of unknown function (DUF1565); In 98.59
PF14592 425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.27
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.19
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 97.85
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 96.6
COG3866 345 PelB Pectate lyase [Carbohydrate transport and met 94.26
smart00656 190 Amb_all Amb_all domain. 93.01
PF01696 386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 92.33
PLN03010 409 polygalacturonase 91.67
PLN02188 404 polygalacturonase/glycoside hydrolase family prote 89.48
PF00544 200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 87.53
PLN02218 431 polygalacturonase ADPG 83.44
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information 
Probab=100.00  E-value=7.3e-82  Score=653.53  Aligned_cols=375  Identities=62%  Similarity=0.941  Sum_probs=308.3

Q ss_pred             ChhhhhhHHHHHHHHHHHHHhcccccCCCCCCCCCCcccccCCCCCCccchhhhccCCCCCCCCCHHHHHHHHHHHHHHH
Q 041181            1 MALKLFFLKTSPILIALLFFAYPSCSAADVDPTTPVPPETICMYTPNPSDCKSVLPAASPNQTADTYTYCRLSIRKALTQ   80 (386)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~T~yp~lC~ssL~~~~~s~~~dp~~l~~~al~~t~~~   80 (386)
                      |+.++.-+.++++||||+   .+.|.+...+|+++..+..+|+.|+||++|+++|++.   ...+|.+|++++|++++++
T Consensus         1 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~s~C~~T~YP~~C~ssLs~s---~~~d~~~l~~aaL~~tl~~   74 (566)
T PLN02713          1 MSSKLILLTTLALLLLLF---FSSSSASDPPPSTPVSPSTICNTTPDPSFCKSVLPHN---QPGNVYDYGRFSVRKSLSQ   74 (566)
T ss_pred             CchhHHHHHHHHHHHHHh---cchhhhcCCCcCCCCCCccccCCCCChHHHHHHhccc---cCCCHHHHHHHHHHHHHHH
Confidence            666666666776644333   3445667778999999999999999999999999862   3568999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHHHHhhhhhHHHh
Q 041181           81 TQKFLNSVDNYLKSGST-LSIGAIRALEDCRLLADLNMDYLSTSYQTANATSQILPAIQADDVQALLSAILTNQQTCFDG  159 (386)
Q Consensus        81 a~~a~~~v~~l~~~~~~-~~~~~~~AL~DC~el~~~aid~L~~S~~~l~~~~~~~~~~~~~Dv~TWLSAALT~q~TC~DG  159 (386)
                      +..+...+..+.+..+. .+++++.||+||+|||++++|+|++++.+|+......+.+..+|+|||||||||||+||+||
T Consensus        75 a~~a~~~vs~L~~~~~~~~~~r~k~AL~DC~ELlddavD~L~~Sl~~l~~~~~~~~~~~~~DvqTWLSAALTnq~TClDG  154 (566)
T PLN02713         75 SRKFLSLVDRYLKRNSTLLSKSAIRALEDCQFLAGLNIDFLLSSFETVNSSSKTLSDPQADDVQTLLSAILTNQQTCLDG  154 (566)
T ss_pred             HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHhhcchhhhhhh
Confidence            99999999988654322 38899999999999999999999999999985432234567899999999999999999999


Q ss_pred             hhcccCCccccccccccchhhHHHHHHHHhhhhcccCcccc-cccccc--cCCCCcccccCCCCCCCccchhhhhhhhhh
Q 041181          160 LQASANSSESINNGLSVPLLEDIKLSSVLLALFKKGWIGDQ-KKIITS--WQPSSTQRLVGQNGRLPLVMSDRIRSIYES  236 (386)
Q Consensus       160 F~e~~~~~~~~~~~i~~~l~~~~~L~SNaLAiv~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~P~W~~~~~~~~~~~  236 (386)
                      |++. +.+..+++.|...+.++++|+||+|||++..+.... ..+...  ....|++++ ...++||+||++.|+++++.
T Consensus       155 F~~~-~~~~~~k~~v~~~l~nvt~LtSNaLAlv~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~P~w~~~~d~~~~~~  232 (566)
T PLN02713        155 LQAA-SSAWSVRNGLAVPLSNDTKLYSVSLALFTKGWVPKKKKGRPKTKRKAHFKPFRA-FRNGRLPLKMTEKTRAVYES  232 (566)
T ss_pred             hhcc-ccchhHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccccccchhc-cccCCCCcCccccccccccc
Confidence            9876 333345667888899999999999999996322211 100000  001233433 23357999999977776665


Q ss_pred             hhccccccccCCCCCCcceeeeEEEcCCCCCCcccHHHHHhhCCCCCCCCCceEEEEEeCceeeeeEEeCCCCCceEEEe
Q 041181          237 AVRGRKLTSTGDGDQGVLVTDIITVAQDGSGNFSTITDAINFAPNNTNVSNGYFLIYITAGVYQEYVSIPKNKINLLMIG  316 (386)
Q Consensus       237 ~~~~r~ll~~~~~~~~~~~~~~i~V~~~g~g~f~TIq~Av~aap~~~~~~~~~~~I~I~~G~Y~E~V~I~~~~~~i~l~G  316 (386)
                       ..+|||||+..  ....+..+++|++||+|+|+|||+||+++|.+...+++|++||||+|+|+|+|+||++|+||+|+|
T Consensus       233 -~~~R~ll~~~~--~~~~~~~~~~Va~dGsG~f~TIq~Av~a~p~~~~~~~~~~vI~Ik~G~Y~E~V~i~~~k~~i~l~G  309 (566)
T PLN02713        233 -VSRRKLLDGDA--NAVLVSDIVTVNQNGTGNFTTINDAVAAAPNNTDGSNGYFVIYVTAGVYEEYVSIPKNKKYLMMIG  309 (566)
T ss_pred             -cccchhhcCcc--ccccCCceEEECCCCCCCCCCHHHHHHhhhcccCCCCceEEEEEcCcEEEEEEEecCCCceEEEEe
Confidence             34799999742  223455679999999999999999999999873334679999999999999999999999999999


Q ss_pred             cCCceeEEEccCCCCCCCCccceeEEEEEcCceEEECCceecCCCCCCCceeeEEEcCCcEEEEeeEEeC
Q 041181          317 DGINQTIITGNRSVADGWTTFNSATFSVVAPNFVASSITFRNTAGPSKGQAAALRSGADFSTFYSCSFEG  386 (386)
Q Consensus       317 ~g~~~t~I~~~~~~~~g~~t~~sat~~v~~~~f~~~~lt~~Nt~g~~~~qAvAl~v~~d~~~f~~C~~~g  386 (386)
                      +|+++|+|+|++++.+|++||+||||.|.|+||+++||||+|++|+.+|||||||++||+++||||+|+|
T Consensus       310 ~g~~~TiIt~~~~~~~g~~T~~SaT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G  379 (566)
T PLN02713        310 DGINQTVITGNRSVVDGWTTFNSATFAVVGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEA  379 (566)
T ss_pred             cCCCCcEEEcCCcccCCCccccceeEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeecc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999997

>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>smart00856 PMEI Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>TIGR01614 PME_inhib pectinesterase inhibitor domain Back     alignment and domain information
>PF04043 PMEI: Plant invertase/pectin methylesterase inhibitor; InterPro: IPR006501 This entry represents a plant domain of about 200 amino acids, characterised by four conserved cysteine residues Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query386
1gq8_A 319 Pectin Methylesterase From Carrot Length = 319 2e-28
1xg2_A 317 Crystal Structure Of The Complex Between Pectin Met 2e-25
3uw0_A 364 Pectin Methylesterase From Yersinia Enterocolitica 6e-05
1qjv_A 342 Pectin Methylesterase Pema From Erwinia Chrysanthem 3e-04
2nsp_A 342 Crystal Structure Of Pectin Methylesterase D178a Mu 3e-04
2ntb_A 342 Crystal Structure Of Pectin Methylesterase In Compl 3e-04
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot Length = 319 Back     alignment and structure 
Iteration: 1

 Score =  123 bits (309), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 61/124 (49%), Positives = 85/124 (68%), Gaps = 3/124 (2%)
Query: 259 ITVAQDGSGNFSTITDAINFAPNNTNVSNGYFLIYITAGVYQEYVSIPKNKINLLMIGDG 318
           + VA DGSG++ T+++A+  AP ++      ++I I AGVY+E V +PK K N++ +GDG
Sbjct: 9   VVVAADGSGDYKTVSEAVAAAPEDSKTR---YVIRIKAGVYRENVDVPKKKKNIMFLGDG 65
Query: 319 INQTIITGNRSVADGWTTFNSATFSVVAPNFVASSITFRNTAGPSKGQAAALRSGADFST 378
              TIIT +++V DG TTFNSAT + V   F+A  ITF+NTAG +K QA ALR G+D S 
Sbjct: 66  RTSTIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSA 125
Query: 379 FYSC 382
           FY C
Sbjct: 126 FYRC 129
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein Length = 317 Back     alignment and structure
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica Length = 364 Back     alignment and structure
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi Length = 342 Back     alignment and structure
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In Complex With Hexasaccharide I Length = 342 Back     alignment and structure
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With Hexasaccharide V Length = 342 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query386
1gq8_A 319 Pectinesterase; hydrolase, carboxylic ester hydrol 3e-58
1xg2_A 317 Pectinesterase 1; protein-protein complex, beta he 1e-57
2nsp_A 342 Pectinesterase A; michaelis complex, hydrolase; HE 5e-44
3uw0_A 364 Pectinesterase; right-handed beta-helix, carbohydr 7e-44
3grh_A 422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 2e-39
1x91_A153 Invertase/pectin methylesterase inhibitor family p 3e-17
1xg2_B153 Pectinesterase inhibitor; protein-protein complex, 9e-17
2cj4_A150 Invertase inhibitor; protein binding, four-helix b 2e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-06
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Length = 319 Back     alignment and structure
 Score =  191 bits (486), Expect = 3e-58
 Identities = 62/128 (48%), Positives = 85/128 (66%), Gaps = 3/128 (2%)

Query: 259 ITVAQDGSGNFSTITDAINFAPNNTNVSNGYFLIYITAGVYQEYVSIPKNKINLLMIGDG 318
           + VA DGSG++ T+++A+  AP +   S   ++I I AGVY+E V +PK K N++ +GDG
Sbjct: 9   VVVAADGSGDYKTVSEAVAAAPED---SKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDG 65

Query: 319 INQTIITGNRSVADGWTTFNSATFSVVAPNFVASSITFRNTAGPSKGQAAALRSGADFST 378
              TIIT +++V DG TTFNSAT + V   F+A  ITF+NTAG +K QA ALR G+D S 
Sbjct: 66  RTSTIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSA 125

Query: 379 FYSCSFEG 386
           FY C    
Sbjct: 126 FYRCDILA 133
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Length = 317 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Length = 342 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Length = 364 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Length = 422 Back     alignment and structure
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A Length = 153 Back     alignment and structure
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis} Length = 153 Back     alignment and structure
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B* Length = 150 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query386
1xg2_A 317 Pectinesterase 1; protein-protein complex, beta he 100.0
1gq8_A 319 Pectinesterase; hydrolase, carboxylic ester hydrol 100.0
3grh_A 422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 100.0
3uw0_A 364 Pectinesterase; right-handed beta-helix, carbohydr 99.97
2nsp_A 342 Pectinesterase A; michaelis complex, hydrolase; HE 99.97
1xg2_B153 Pectinesterase inhibitor; protein-protein complex, 99.97
1x91_A153 Invertase/pectin methylesterase inhibitor family p 99.97
2cj4_A150 Invertase inhibitor; protein binding, four-helix b 99.96
1ru4_A 400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.32
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 99.09
2inu_A 410 Insulin fructotransferase; right-handed parallel b 98.41
2pyg_A 377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 97.13
1pxz_A 346 Major pollen allergen JUN A 1; parallel beta-helix 96.76
1qcx_A 359 Pectin lyase B; beta-helix protein, plant cell WAL 96.21
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 96.19
1idk_A 359 Pectin lyase A; signal, glycoprotein, multigene fa 95.73
1pcl_A 355 Pectate lyase E; lyase (acting on polysaccharides) 95.22
1bhe_A 376 PEHA, polygalacturonase; family 28 glycosyl hydrol 95.1
2iq7_A 339 Endopolygalacturonase; parallel beta helix, hydrol 95.03
1hg8_A 349 Endopolygalacturonase; hydrolase, pectin degradati 95.01
3zsc_A 340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 94.73
2o04_A 399 Pectate lyase, PL; hexasaccharide compound II, cal 94.65
1air_A 353 Pectate lyase C, PELC; pectate cleavage, pectinoly 94.62
1pe9_A 361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 94.6
2qy1_A 330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 94.4
1nhc_A 336 Polygalacturonase I; beta-helix, hydrolase; HET: M 94.32
1ia5_A 339 Polygalacturonase; glycosylhydrolase, hydrolase; H 94.1
3vmv_A 326 Pectate lyase; polysaccharide lyase family 1, beta 93.78
1rmg_A 422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 93.43
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 93.34
1czf_A 362 Polygalacturonase II; beta helix, hydrolase; HET: 93.19
1vbl_A 416 Pectate lyase 47; PL 47, thermostable, bacillus su 91.95
2uvf_A 608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 91.24
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 90.87
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 89.75
3jur_A 448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 89.05
1vcl_A432 Hemolytic lectin CEL-III; hemolysis, hemagglutinat 84.09
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 83.63
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
Probab=100.00  E-value=2.4e-35  Score=287.54  Aligned_cols=128  Identities=44%  Similarity=0.755  Sum_probs=123.7

Q ss_pred             eeeEEEcCCCCCCcccHHHHHhhCCCCCCCCCceEEEEEeCceeeeeEEeCCCCCceEEEecCCceeEEEccCCCCCCCC
Q 041181          256 TDIITVAQDGSGNFSTITDAINFAPNNTNVSNGYFLIYITAGVYQEYVSIPKNKINLLMIGDGINQTIITGNRSVADGWT  335 (386)
Q Consensus       256 ~~~i~V~~~g~g~f~TIq~Av~aap~~~~~~~~~~~I~I~~G~Y~E~V~I~~~~~~i~l~G~g~~~t~I~~~~~~~~g~~  335 (386)
                      +++++|++||+|+|+|||+||+++|++   +++|++|+|+||+|+|+|.|++.|++|+|+|+|+++|+|+|+++..+|++
T Consensus         2 ~~~i~V~~dGsg~f~TIq~AI~aap~~---~~~~~~I~I~~G~Y~E~V~I~~~k~~Itl~G~g~~~tiI~~~~~~~~g~~   78 (317)
T 1xg2_A            2 IANAVVAQDGTGDYQTLAEAVAAAPDK---SKTRYVIYVKRGTYKENVEVASNKMNLMIVGDGMYATTITGSLNVVDGST   78 (317)
T ss_dssp             CCSEEECTTSCSSBSSHHHHHHHSCSS---CSSCEEEEECSEEEECCEEECTTSCSEEEEESCTTTEEEEECCCTTTTCC
T ss_pred             CceEEECCCCCCCcccHHHHHhhcccC---CCceEEEEEcCCEEeeeeecCCCCCcEEEEEcCCCCcEEEecccccCCCc
Confidence            468999999999999999999999998   67899999999999999999999999999999999999999999889999


Q ss_pred             ccceeEEEEEcCceEEECCceecCCCCCCCceeeEEEcCCcEEEEeeEEeC
Q 041181          336 TFNSATFSVVAPNFVASSITFRNTAGPSKGQAAALRSGADFSTFYSCSFEG  386 (386)
Q Consensus       336 t~~sat~~v~~~~f~~~~lt~~Nt~g~~~~qAvAl~v~~d~~~f~~C~~~g  386 (386)
                      |+.++||.|.+++|+++||||+|++|+.++|||||++++|+++||||+|+|
T Consensus        79 t~~satv~v~a~~f~~~~lt~~Nt~g~~~~qAvAl~v~~d~~~f~~c~f~g  129 (317)
T 1xg2_A           79 TFRSATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMSVINRCRIDA  129 (317)
T ss_dssp             SGGGCSEEECSTTCEEESCEEEECCCGGGCCCCSEEECCTTEEEESCEEEC
T ss_pred             ccceeEEEEECCCEEEEEeEEecccCCccCceEEEEEeCCcEEEEEeEeCc
Confidence            999999999999999999999999999889999999999999999999987
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis} Back     alignment and structure
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A Back     alignment and structure
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1vcl_A Hemolytic lectin CEL-III; hemolysis, hemagglutination, pore-forming, calcium, toxin; HET: BTB; 1.70A {Cucumaria echinata} SCOP: b.42.2.1 b.42.2.1 d.281.1.1 PDB: 2z48_A* 2z49_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 386
d1gq8a_ 319 b.80.1.5 (A:) Pectin methylesterase PemA {Carrot ( 4e-47
d1qjva_ 342 b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia 9e-31
d2cj4a1147 a.29.6.1 (A:4-150) Invertase inhibitor {Common tob 2e-14
d1x91a_149 a.29.6.1 (A:) Pectin methylesterase inhibitor 1, P 2e-14
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Length = 319 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

 Score =  161 bits (408), Expect = 4e-47
 Identities = 62/128 (48%), Positives = 85/128 (66%), Gaps = 3/128 (2%)

Query: 259 ITVAQDGSGNFSTITDAINFAPNNTNVSNGYFLIYITAGVYQEYVSIPKNKINLLMIGDG 318
           + VA DGSG++ T+++A+  AP +   S   ++I I AGVY+E V +PK K N++ +GDG
Sbjct: 9   VVVAADGSGDYKTVSEAVAAAPED---SKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDG 65

Query: 319 INQTIITGNRSVADGWTTFNSATFSVVAPNFVASSITFRNTAGPSKGQAAALRSGADFST 378
              TIIT +++V DG TTFNSAT + V   F+A  ITF+NTAG +K QA ALR G+D S 
Sbjct: 66  RTSTIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSA 125

Query: 379 FYSCSFEG 386
           FY C    
Sbjct: 126 FYRCDILA 133
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Length = 342 Back     information, alignment and structure
>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 147 Back     information, alignment and structure
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 149 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query386
d1gq8a_ 319 Pectin methylesterase PemA {Carrot (Daucus carota) 100.0
d1qjva_ 342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 99.96
d2cj4a1147 Invertase inhibitor {Common tobacco (Nicotiana tab 99.95
d1x91a_149 Pectin methylesterase inhibitor 1, PMEI1 {Thale cr 99.95
d1ru4a_ 400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 98.94
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.67
d1bhea_ 376 Polygalacturonase {Erwinia carotovora, subsp. caro 96.85
d1bn8a_ 399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 96.45
d1idka_ 359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 95.67
d1qcxa_ 359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 95.65
d1pe9a_ 361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 94.85
d1pcla_ 355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 94.39
d1pxza_ 346 Major pollen allergen Jun a 1 {Ozark white cedar ( 94.12
d1rmga_ 422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 91.08
d1hg8a_ 349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 85.35
d1nhca_ 336 Polygalacturonase {Fungus (Aspergillus niger), end 82.03
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

Probab=100.00  E-value=4e-38  Score=304.09  Aligned_cols=130  Identities=48%  Similarity=0.788  Sum_probs=126.1

Q ss_pred             ceeeeEEEcCCCCCCcccHHHHHhhCCCCCCCCCceEEEEEeCceeeeeEEeCCCCCceEEEecCCceeEEEccCCCCCC
Q 041181          254 LVTDIITVAQDGSGNFSTITDAINFAPNNTNVSNGYFLIYITAGVYQEYVSIPKNKINLLMIGDGINQTIITGNRSVADG  333 (386)
Q Consensus       254 ~~~~~i~V~~~g~g~f~TIq~Av~aap~~~~~~~~~~~I~I~~G~Y~E~V~I~~~~~~i~l~G~g~~~t~I~~~~~~~~g  333 (386)
                      .++++++|++||+|+|+|||+||+++|.+   ++.|++|+|+||+|+|+|+||++|+||+|+|+|++.|+|+++.+..++
T Consensus         4 ~~~p~i~V~~dGsGdf~TIq~AIda~p~~---~~~~~~I~I~~G~Y~E~V~I~~~k~~itl~G~g~~~tiIt~~~~~~~~   80 (319)
T d1gq8a_           4 TVGPNVVVAADGSGDYKTVSEAVAAAPED---SKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNVQDG   80 (319)
T ss_dssp             SSCCSEEECTTSCSSBSSHHHHHHHSCSS---CSSCEEEEECSEEEECCEEECTTCCSEEEEESCTTTEEEEECCCTTTT
T ss_pred             cCCCCEEECCCCCCCccCHHHHHhhCccC---CCCcEEEEEcCceEEEEEEECCCCCeEEEEEcCCCCcEEEecccccCC
Confidence            46789999999999999999999999998   788999999999999999999999999999999999999999999999


Q ss_pred             CCccceeEEEEEcCceEEECCceecCCCCCCCceeeEEEcCCcEEEEeeEEeC
Q 041181          334 WTTFNSATFSVVAPNFVASSITFRNTAGPSKGQAAALRSGADFSTFYSCSFEG  386 (386)
Q Consensus       334 ~~t~~sat~~v~~~~f~~~~lt~~Nt~g~~~~qAvAl~v~~d~~~f~~C~~~g  386 (386)
                      .+|++++||.|.+++|+++||||+|++|+.++|||||++.+||++||+|+|+|
T Consensus        81 ~~t~~sat~~v~~~~f~a~nitf~Nt~g~~~~QAvAl~v~gd~~~fy~c~f~G  133 (319)
T d1gq8a_          81 STTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYRCDILA  133 (319)
T ss_dssp             CCTGGGCSEEECSTTCEEEEEEEEECCCGGGCCCCSEEECCTTEEEEEEEEEC
T ss_pred             CccccccceeeecCCeEEEeeEEEeCCCCCCCcEEEEEecCcceEEEcceecc
Confidence            99999999999999999999999999999899999999999999999999997
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure