Citrus Sinensis ID: 041188

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------41
Protein Sequence
MATLSTSLRFLTILAIYLLIITKSAALTDVETLFTTTPPPQQTPPPPSDLNDQSSFFSHTAMLAPILSHLGFNELATAAPSLSNDAVATSWSGPSTLFAPSDSSLHTCFSCSVPSLLREHLVPGLFTIDYLRKLAFGTKIESLSPGRCITITSSKSENDTVSKVFIGGVEITHPDLFNNGIIIIHGIQGYISPLSPLSCDVERMTSLSFPFQPSDRGHHHQQIQTQQPIMRLMLRDAMLRLRNNGYSILSLAMKVKYQELINLANMTVFALDDVSIFSGSYTYISNVRFHIIPNRYLTIGDLERLPVGTTLPTLARGQSLTVTTAGGASVTAPLRINYVRVKVPDVMKNLKIVVHGIYLPFPHLHPATVFDGVIGVSGNADGGSDGGDPSIEGECSVMDEHGIGSCGGT
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHccHHHHHHHHHHcccccccccccccEEEEEcccccccccccccHHHHHHHHcccccccHHHHHccccccEEEccccccEEEEcccccccccccEEEEccEEEccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccEEEEEEccccccccccccccccccccccccccccHHHHccccccccccccccccEEEEEEcccccccccEEEccEEEEcccEEEcccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHcHHHEEEccccccccccccccccccccccccccccHHHHHHHHHHHccHHHHHHHHHHHHcccccccccccEEEEccccHHHHccccccHHHHHHHHcccccccHHHHHHcccccEccccccccEEEEEEcccccccccEEEEccEEEEccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccEEEEHHEHccHHHHcccccEEEEccccHHHccccccHHHHHHHEEcccccccHHHHHHcccccEccccccccEEEEEEEcccccccEEEEccEEEEcccEEEccEEEEEEEEcccccccHHHHHHHHcccccccccccccccccccccEEEEccccccccccc
Coil and Loop (DISEMBL)
MATLSTSLRFLTILAIYLLIITKSaaltdvetlftttpppqqtppppsdlndqssffshTAMLAPIlshlgfnelataapslsndavatswsgpstlfapsdsslhtcfscsvpsllrehlvpglfTIDYLRKLAFgtkieslspgrcititssksendtvSKVFIGgveithpdlfnngiiiihgiqgyisplsplscdvermtslsfpfqpsdrghhhqqiQTQQPIMRLMLRDAMLRLRNNGYSILSLAMKVKYQELINLAnmtvfalddvsifsgsytyisnvrfhiipnryltigdlerlpvgttlptlargqsltvttaggasvtaplrINYVRVKVPDVMKNLKIVVHGiylpfphlhpatvfdgvigvsgnadggsdggdpsiegecsvmdehgigscggt
Flexible Loop (DISEMBL)
MATLSTSLRFLTILAIYLLIITKSAALTDVETLFTTTPPPQQTPPPPSDLNDQSSFFSHTAMLAPILSHLGFNELATAAPSLSNDAVATSWSGPSTLFAPSDSSLHTCFSCSVPSLLREHLVPGLFTIDYLRKLAFgtkieslspgrcititssksendtvSKVFIGGVEITHPDLFNNGIIIIHGIQGYISPLSPLSCDVERMTSLSFPFQPSDRGHHHQQIQTQQPIMRLMLRDAMLRLRNNGYSILSLAMKVKYQELINLANMTVFALDDVSIFSGSYTYISNVRFHIIPNRYLTIGDLERLPVGTTlptlargqsltvttaggasvtaplrinYVRVKVPDVMKNLKIVVHGIYLPFPHLHPATVFDGVIGVSGNADGGSDGGDPSIEGecsvmdehgigscggt
Low Complexity Region (SEG)
MATLSTSLRFltilaiylliitKSAALTDVETLFtttpppqqtppppSDLNDQSSFFSHTAMLAPILSHLGFNELATAAPSLSNDAVATSWSGPSTLFAPSDSSLHTCFSCSVPSLLREHLVPGLFTIDYLRKLAFGTKIESLSPGRCITITSSKSENDTVSKVFIGGVEITHPDLFNNgiiiihgiqgyiSPLSPLSCDVERMTSLSFPFQPSDRGhhhqqiqtqqPImrlmlrdamlrlrNNGYSILSLAMKVKYQELINLANMTVFALDDVSIFSGSYTYISNVRFHIIPNRYLTIGDLERLPVGTTLPTLARGQSLtvttaggasvtaPLRINYVRVKVPDVMKNLKIVVHGIYLPFPHLHPATVFDGVIgvsgnadggsdggdpsiegECSVMDEHGIGSCGGT
Disordered region (IsUnstruct)
******SLRFLTILAIYLLIITKSAALTDVETLFT*********************FSHTAMLAPILSHLGFNELATAAP*L***AVATSWSG*STLFAPSDSSLHTCFSCSVPSLLREHLVPGLFTIDYLRKLAFGTKIESLSPGRCITITSS***NDTVSKVFIGGVEITHPDLFNNGIIIIHGIQGYISPLSPLSCDVERMT**********************PIMRLMLRDAMLRLRNNGYSILSLAMKVKYQELINLANMTVFALDDVSIFSGSYTYISNVRFHIIPNRYLTIGDLERLPVGTTLPTLARGQSLTVTTAGGASVTAPLRINYVRVKVPDVMKNLKIVVHGIYLPFPHLHPATVFDGVIGVS********************************
Disordered Region (DISOPRED)
******S**FLTILAIYLLIITKSAAL**********************************MLAPILSHLGFNELATAAPSLSNDAVATSWSGPSTLFAPSDSSLHTCFSCSVPSLLREHLVPGLFTIDYLRKLAFGTKIESLSPGRCITITSSKSENDTVSKVFIGGVEITHPDLFNNGIIIIHGIQGYISPLSPLSC***************************QPIMRLMLRDAMLRLRNNGYSILSLAMKVKYQELINLANMTVFALDDVSIFSGSYTYISNVRFHIIPNRYLTIGDLERLPVGTTLPTLARGQSLTVTTAGGASVTAPLRINYVRVKVPDVMKNLKIVVHGIYLPFPHLHPATVF**********************GECSVMDEHGIGSCG**
Disordered Region (DISEMBL)
MATLSTSLRFLTILAIYLLIITKSAALTDVETLFTT**************NDQSSFFSHTAMLAPILSHLGFNELATAAPSLSNDAVATSWSGPSTLFAPSDSSLHTCFSCSVPSLLREHLVPGLFTIDYLRKLAFGTKIESLSPGRCITITSSKSENDTVSKVFIGGVEITHPDLFNNGIIIIHGIQGYISPLSPLSCDVERMTSLSFPFQ**************QPIMRLMLRDAMLRLRNNGYSILSLAMKVKYQELINLANMTVFALDDVSIFSGSYTYISNVRFHIIPNRYLTIGDLERLPVGTTLPTLARGQSLTVTTAGGASVTAPLRINYVRVKVPDVMKNLKIVVHGIYLPFPHLHPATVFDGVIGVSGNADGGSDGGDPSIEGECSVMDEHGIGSCGGT
Disordered Region (DISPRO)
****STSLRFLTILAIYLLIITKSAALTDVETLFTT******************SFFSHTAMLAPILSHLGFNELATAAPSLSNDAVATSWSGPSTLFAPSDSSLHTCFSCSVPSLLREHLVPGLFTIDYLRKLAFGTKIESLSPGRCITITSSKSENDTVSKVFIGGVEITHPDLFNNGIIIIHGIQGYISPLSPLSCDVERMTSLSFPFQP**********QTQQPIMRLMLRDAMLRLRNNGYSILSLAMKVKYQELINLANMTVFALDDVSIFSGSYTYISNVRFHIIPNRYLTIGDLERLPVGTTLPTLARGQSLTVTTAGGASVTAPLRINYVRVKVPDVMKNLKIVVHGIYLPFPHLHPATVFDGVIGV******************CS*********C***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATLSTSLRFLTILAIYLLIITKSAALTDVETLFTTTPPPQQTPPPPSDLNDQSSFFSHTAMLAPILSHLGFNELATAAPSLSNDAVATSWSGPSTLFAPSDSSLHTCFSCSVPSLLREHLVPGLFTIDYLRKLAFGTKIESLSPGRCITITSSKSENDTVSKVFIGGVEITHPDLFNNGIIIIHGIQGYISPLSPLSCDVERMTSLSFPFQPSDRGHHHQQIQTQQPIMRLMLRDAMLRLRNNGYSILSLAMKVKYQELINLANMTVFALDDVSIFSGSYTYISNVRFHIIPNRYLTIGDLERLPVGTTLPTLARGQSLTVTTAGGASVTAPLRINYVRVKVPDVMKNLKIVVHGIYLPFPHLHPATVFDGVIGVSGNADGGSDGGDPSIEGECSVMDEHGIGSCGGT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	409	2.2.26 [Sep-21-2011]
Q9FL53	353	Fasciclin-like arabinogal	yes	no	0.638	0.739	0.292	5e-13
Q9FGW0	424	Putative fasciclin-like a	no	no	0.669	0.646	0.240	5e-05
Q5Q0H2	248	Fasciclin-like arabinogal	no	no	0.268	0.443	0.336	8e-05

>sp|Q9FL53|FLA21_ARATH Fasciclin-like arabinogalactan protein 21 OS=Arabidopsis thaliana GN=FLA21 PE=2 SV=1

 Score = 75.9 bits (185), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 85/291 (29%), Positives = 129/291 (44%), Gaps = 30/291 (10%)

Query: 90  SWSGPSTLFAPSD------SSLHTCFSCSVPSLLREHLVPGLFTIDYLRKLAFGTKIESL 143
           S S  +TLFA  D      SSLH  F   +  LL  H +P + ++D L K   GT + +L
Sbjct: 77  SSSPNTTLFAIEDASFFNTSSLHPLF---LKQLLHYHTLPLMLSMDDLLKKPQGTCLPTL 133

Query: 144 SPGRCITITSSKSENDTVSKVFIGGVEITHPDLFNNGIIIIHGIQGYISPLSPLSCDVER 203
              + + I++   E+ T     +  V ITHPD+F    ++IHG+ G  SPL P S  +  
Sbjct: 134 LHHKSVQISTVNQESRTAE---VNHVRITHPDMFLGDSLVIHGVIGPFSPLQPHSDHL-- 188

Query: 204 MTSLSFPFQPSDRGHHHQQIQTQQPIMRLMLRDAMLRLRNNGYSILSLAMKVKYQELIN- 262
              +  P   SD  +       + P+     R   L L +NG+   ++ +      ++N 
Sbjct: 189 ---IHTPLCQSDTTNKTSN-NEEVPVSIDWTRIVQL-LSSNGFVPFAIGLHSVLNRIVND 243

Query: 263 ------LANMTVFALDD-VSIFSGSYTYISNVRFHIIPNRYLTIGDLERLPVGTTLPTLA 315
                 L  +T+ A  + VS+ S S      VR HI+  R LT  D   +    T+ TL 
Sbjct: 244 HNHHKNLTGVTILATPNLVSLSSASPFLYEVVRHHILVQR-LTYKDFASMSDKATVKTLD 302

Query: 316 RGQSLTVTTAGGASVTAPLRINYVRVKVPDVMKNLKIVVHGI--YLPFPHL 364
             Q LT+T     S      I+ V +  PD+  +   V+HGI   L  PH+
Sbjct: 303 PYQDLTITRRNVNSSGGDFMISGVEIVDPDMFSSSNFVIHGISHTLEIPHV 353

May be a cell surface adhesion protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGW0|FLA20_ARATH Putative fasciclin-like arabinogalactan protein 20 OS=Arabidopsis thaliana GN=FLA20 PE=3 SV=1

 Score = 49.3 bits (116), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 137/324 (42%), Gaps = 50/324 (15%)

Query: 66  ILSHLGFNELATAAPSLSNDAVATSWSGPSTLFAPSDSSLHTCFSCSVPSLL--REHLVP 123
           +LS  G+  +       + D     W    TLFAPSD S         PSLL  +  L P
Sbjct: 75  VLSDSGYLSMGLTLKLANQDLNLEDWQ-ELTLFAPSDQSFS---KFGQPSLLDMKYQLSP 130

Query: 124 GLFTIDYLRKLAFGTKIESLSPGRCITITSSKSENDTVSKVFIGGVEITHPDLFNNGIII 183
                + LR L  G KI +L     +T+T+S        K  I  V +    +F++G ++
Sbjct: 131 TRLPGETLRNLPNGAKIPTLRSNYSLTVTNSSRFG---GKTSINNVVVQDSPVFDDGYVV 187

Query: 184 IHGIQGYISPLSPLSCDVERM-------------------TSLSFPFQPSDRGHHHQQIQ 224
           I+G   + +  SP     +                     ++   P  P+      + + 
Sbjct: 188 IYGSDEFFT--SPTKISDDSSSSSSIPSTTSSTGSIPIPSSATQTPPSPNIASDSTRNLP 245

Query: 225 TQ-QPIMRLMLRDAMLR-LRNNGYSILS--LAMKVKYQELINLANMTVFALDDVSI---- 276
            + +P+ R  + ++  R L + G+ I++  LA++++     N   +TVFA  D +I    
Sbjct: 246 NRSKPVNRFNIFESASRLLMSRGFVIIATFLALQLEDNTSGNDTKITVFAPIDEAIPNPT 305

Query: 277 --FSGSYTYISNVRFHIIPNRYLTIGDLERL-PVGTTLPTLARGQSLTVTTAGGASVTAP 333
             FS    Y++  R H++ ++ L   DL++    G+ L T+ +G  + ++ +G       
Sbjct: 306 TKFSD---YVTIFRGHVV-SQLLLWKDLQKFAKEGSILQTVLKGYEIEISLSGDI----- 356

Query: 334 LRINYVRVKVPDVMKNLKIVVHGI 357
           L +N V +  PD+  N  I VHG 
Sbjct: 357 LLLNGVPLIYPDLYVNDWIAVHGF 380

May be a cell surface adhesion protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5Q0H2|FLA19_ARATH Fasciclin-like arabinogalactan protein 19 OS=Arabidopsis thaliana GN=FLA19 PE=2 SV=2

 Score = 48.5 bits (114), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 63/119 (52%), Gaps = 9/119 (7%)

Query: 96  TLFAPSDSSLHTC-FSCSVP---SLLREHLVPGLFTIDYLRKLAFGTKIESLSPGRCITI 151
           TLFAP+DS L     + S+P   S LR H VP   ++  LR L   + + +L P   + +
Sbjct: 70  TLFAPTDSMLFDLDMTHSLPFYVSTLRLHSVPLRLSLSGLRSLPNSSSLPTLLPSHRLLL 129

Query: 152 TSSKSENDTVSKVFIGGVEITHPDLFNNGIIIIHGIQGYISPLSPLSCD--VERMTSLS 208
           T   S ND++   F+ GV++  P LF+   I +HG+   +   +P S +  VE  T+L+
Sbjct: 130 TKHSSSNDSI---FLDGVQLLIPGLFDGQHIAVHGLADLLPLTAPSSPNRLVEDSTALA 185

May be a cell surface adhesion protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	409
356511115	444	PREDICTED: uncharacterized protein LOC10	0.985	0.907	0.627	1e-140
356528501	440	PREDICTED: uncharacterized protein LOC10	0.860	0.8	0.663	1e-139
224081182	442	predicted protein [Populus trichocarpa]	0.907	0.839	0.652	1e-137
255576164	431	conserved hypothetical protein [Ricinus	0.853	0.809	0.662	1e-137
357473961	454	Fasciclin-like arabinogalactan protein [	0.965	0.870	0.607	1e-136
357519561	448	Fasciclin-like arabinogalactan protein [	0.965	0.881	0.605	1e-136
357519729	447	Fasciclin-like arabinogalactan protein [	0.965	0.883	0.604	1e-135
147787729	412	hypothetical protein VITISV_004737 [Viti	0.948	0.941	0.513	1e-112
225424518	412	PREDICTED: uncharacterized protein LOC10	0.948	0.941	0.513	1e-112
297737551	392	unnamed protein product [Vitis vinifera]	0.909	0.948	0.532	1e-104

>gi|356511115|ref|XP_003524275.1| PREDICTED: uncharacterized protein LOC100806312 [Glycine max]

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 266/424 (62%), Positives = 320/424 (75%), Gaps = 21/424 (4%)

Query: 1   MATLSTSLRFLTILAIYLLIITKSAALTDVETLFTTTPPPQQTPPPPSDLNDQSSFFSHT 60
           M   S S RF  + A+    I  S  +T     F     P   PPPP D++D S FFSHT
Sbjct: 1   MENSSFSRRFALLCAVSFAAILCSPKVTATIEGFEAPFAPSTPPPPPPDIHDHS-FFSHT 59

Query: 61  AMLAPILSHLGFNELATAAPSLSNDAV--ATSWSGPSTLFAPSDSSLHTCFSCSVPSLLR 118
           A+L PILSHLGF+ELATAAPSLS+ A   + +W+GPST+FAPSD+SL TCFSCSVP+LLR
Sbjct: 60  AILPPILSHLGFHELATAAPSLSDAATTGSVAWTGPSTIFAPSDASLRTCFSCSVPNLLR 119

Query: 119 EHLVPGLFTIDYLRKLAFGTKIESLSPGRCITITSS---KSENDTVSKVFIGGVEITHPD 175
           EH+VPGLFTIDYLRKLAFGTKIE+LSPGRCIT+TS    ++ N+T +KVF+GGVEIT PD
Sbjct: 120 EHIVPGLFTIDYLRKLAFGTKIETLSPGRCITVTSDTLHRNTNNTAAKVFVGGVEITQPD 179

Query: 176 LFNNGIIIIHGIQGYISPLSPLSCDVERMTSLSFPFQPSDR-GH-----HHQQIQTQQP- 228
           LFNNG++++HG+QGY+SPLSP SCDVERM SLSFPF P  R GH     HH    T QP 
Sbjct: 180 LFNNGMVVVHGLQGYVSPLSPFSCDVERMNSLSFPFHPDHRSGHAQHHLHHSNSATVQPA 239

Query: 229 -IMRLMLRDAMLRLRNNGYSILSLAMKVKYQELINLANMTVFALDDVSIFSGSYTYISNV 287
            +MRLMLRDAMLRLRNNG+ IL+LAMKVKY EL+ L NMTVFA+DD+SIFSGS+ YI NV
Sbjct: 240 AMMRLMLRDAMLRLRNNGFGILALAMKVKYAELVTLNNMTVFAVDDLSIFSGSHAYIGNV 299

Query: 288 RFHIIPNRYLTIGDLERLPVGTTLPTLARGQSLTVTTAGGASVTAPLRINYVRVKVPDVM 347
           RFHI+PN YL+I DLE+LPVGT LPTL RGQSL +TT+G     AP+RINYVRVKV DV+
Sbjct: 300 RFHIVPNHYLSIADLEKLPVGTALPTLERGQSLLITTSGRGETLAPMRINYVRVKVADVI 359

Query: 348 KNLKIVVHGIYLPFPHLHP-ATVFDGVIGVSGNADGG----SDGGDPSIEGECSVMDEHG 402
           +N+KIVVH +YLPFPH++P A  +D ++G    A  G    +D  D + +G CSV+D  G
Sbjct: 360 RNVKIVVHSVYLPFPHINPVAAAYDSILGGGEGASEGAGNIADSADQTTQGTCSVVD--G 417

Query: 403 IGSC 406
            GSC
Sbjct: 418 RGSC 421

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528501|ref|XP_003532841.1| PREDICTED: uncharacterized protein LOC100793476 [Glycine max]

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 244/368 (66%), Positives = 298/368 (80%), Gaps = 16/368 (4%)

Query: 53  QSSFFSHTAMLAPILSHLGFNELATAAPSLSNDAV--ATSWSGPSTLFAPSDSSLHTCFS 110
           + SFFSHTA+L PILSHLGF++LATAAPSLS+ A   + +W+GPST+FAPSD+SL TCFS
Sbjct: 52  EHSFFSHTALLPPILSHLGFHQLATAAPSLSDTATTGSAAWTGPSTIFAPSDASLRTCFS 111

Query: 111 CSVPSLLREHLVPGLFTIDYLRKLAFGTKIESLSPGRCITITSS---KSENDTVSKVFIG 167
           CSVP+LLREH+VPGLFTIDYLRKLAFGTKIE+LSPG CIT+TS    ++ N+T +KVF+G
Sbjct: 112 CSVPNLLREHIVPGLFTIDYLRKLAFGTKIETLSPGHCITVTSDTLHRNTNNTAAKVFVG 171

Query: 168 GVEITHPDLFNNGIIIIHGIQGYISPLSPLSCDVERMTSLSFPFQPSD-RGH-----HHQ 221
           GVEIT PDLFNNG++++HG+QG++SPLSP SCDVERM SLSFPF P    GH     HH 
Sbjct: 172 GVEITQPDLFNNGMVVVHGLQGFVSPLSPFSCDVERMNSLSFPFHPDHPSGHARHHLHHS 231

Query: 222 QIQTQQP--IMRLMLRDAMLRLRNNGYSILSLAMKVKYQELINLANMTVFALDDVSIFSG 279
              T QP  +MRLMLRDAMLRLRNNG+SIL+LAMKVKY EL+ L NMTVFA+DD+SIFSG
Sbjct: 232 NSPTAQPAAMMRLMLRDAMLRLRNNGFSILALAMKVKYAELVTLNNMTVFAVDDLSIFSG 291

Query: 280 SYTYISNVRFHIIPNRYLTIGDLERLPVGTTLPTLARGQSLTVTTAGGASVTAPLRINYV 339
           S+ YISNVRFHI+PN YL+I DLE+LPVG  LPTL RGQSL +TT+GG    AP+RINYV
Sbjct: 292 SHAYISNVRFHIVPNHYLSIADLEKLPVGIALPTLERGQSLLITTSGGGETLAPMRINYV 351

Query: 340 RVKVPDVMKNLKIVVHGIYLPFPHLHP-ATVFDGVIGVSGNADGGSDGGDPSIEGECSVM 398
           RV+V DV++N+KIVVH +YLPFPH++P A  +D ++G S  A+   D  + + +G CS +
Sbjct: 352 RVRVSDVIRNVKIVVHSVYLPFPHINPVAAAYDSILGGSEGAENIPDSAEQTTQGTCSAV 411

Query: 399 DEHGIGSC 406
           D  G GSC
Sbjct: 412 D--GRGSC 417

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081182|ref|XP_002306324.1| predicted protein [Populus trichocarpa] gi|222855773|gb|EEE93320.1| predicted protein [Populus trichocarpa]

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 257/394 (65%), Positives = 296/394 (75%), Gaps = 23/394 (5%)

Query: 32  TLFTTTPPPQQTPPP--PSDLNDQSSFFSHTAMLAPILSHLGFNELATAAPSLSNDAVAT 89
           T F++   PQ   P    SD     SF SHT +LAPILSHLGF +LA A PSL  D+  T
Sbjct: 30  TTFSSNLSPQSPQPQISTSDHFHDHSFSSHTNLLAPILSHLGFTQLAMAVPSLPADSTTT 89

Query: 90  SWSGPSTLFAPSDSSLHTCFSCSVPSLLREHLVPGLFTIDYLRKLAFGTKIESLSPGRCI 149
           +WSGPSTLFAPSDSSL TCFSCS+P LL EH+VPGLF+IDYLRKLAFGTKIE+LSPGRCI
Sbjct: 90  AWSGPSTLFAPSDSSLRTCFSCSIPDLLHEHIVPGLFSIDYLRKLAFGTKIETLSPGRCI 149

Query: 150 TITSSKSENDTVS----KVFIGGVEITHPDLFNNGIIIIHGIQGYISPLSPLSCDVERMT 205
           T+TS+  +ND+ +    KVFIGGVEITHPDLFNNG++IIHGIQGYI+PLSP SCD ER++
Sbjct: 150 TVTSTSLKNDSATPSTVKVFIGGVEITHPDLFNNGVLIIHGIQGYIAPLSPFSCDFERLS 209

Query: 206 SLSFPFQPSDRGH-----HHQQIQT--QQPIMRLMLRDAMLRLRNNGYSILSLAMKVKYQ 258
           SLSFPFQ     H     H Q I T  Q  IMRLMLRDAMLRLR+NG++ILSLAM+VKY 
Sbjct: 210 SLSFPFQEGVTPHVTSTTHQQGIGTLVQPAIMRLMLRDAMLRLRSNGFTILSLAMRVKYP 269

Query: 259 ELINLANMTVFALDDVSIFSGSYTYISNVRFHIIPNRYLTIGDLERLPVGTTLPTLARGQ 318
           EL NL NMTVFALDDVSIFSGS+ YIS+VRFHI+PN YL+  DLERLPVG TLPTL RGQ
Sbjct: 270 ELTNLVNMTVFALDDVSIFSGSHGYISSVRFHIVPNHYLSTADLERLPVGATLPTLERGQ 329

Query: 319 SLTVTTAGGAS---VTAPLRINYVRVKVPDVMKNLKIVVHGIYLPFPHLHP--ATVFDGV 373
           +L VT+AGG +      P+RINYVRVKVPDVM+NLKIVVH +YLPFP +HP  A  FD +
Sbjct: 330 ALVVTSAGGLTGFNTAVPMRINYVRVKVPDVMRNLKIVVHAVYLPFPRIHPTSAAAFDEM 389

Query: 374 IGVSGNADGGSDGGDPSIEGECSVMDEHGIGSCG 407
           +G+ G         D    G CS + E   GSCG
Sbjct: 390 MGIGGEGQNIVAAED----GACSAVFEED-GSCG 418

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576164|ref|XP_002528976.1| conserved hypothetical protein [Ricinus communis] gi|223531566|gb|EEF33395.1| conserved hypothetical protein [Ricinus communis]

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 240/362 (66%), Positives = 292/362 (80%), Gaps = 13/362 (3%)

Query: 53  QSSFFSHTAMLAPILSHLGFNELATAAPSLSNDAVATSWSGPSTLFAPSDSSLHTCFSCS 112
           ++SFFSHTA+LAPILSHLGF EL+TAAPSLS+     +WSGPSTLFAPSDSS+HTC SCS
Sbjct: 58  ENSFFSHTALLAPILSHLGFTELSTAAPSLSS---TETWSGPSTLFAPSDSSIHTCLSCS 114

Query: 113 VPSLLREHLVPGLFTIDYLRKLAFGTKIESLSPGRCITITSSKSENDTVS-----KVFIG 167
           VPSLLREH+VPGL+TIDYLRKLAFGTKIE+LSPGRC+T+TS+  +N  V+     KVFIG
Sbjct: 115 VPSLLREHIVPGLYTIDYLRKLAFGTKIETLSPGRCLTVTSTSLKNQNVNVSSIFKVFIG 174

Query: 168 GVEITHPDLFNNGIIIIHGIQGYISPLSPLSCDVERMTSLSFPFQPSDRGHHHQQIQTQQ 227
           GVEITHPDLFNNG+IIIHGI+GY++PLSPLSCDVER+ SL FP   + +   HQ +    
Sbjct: 175 GVEITHPDLFNNGLIIIHGIRGYVAPLSPLSCDVERLNSLIFPVN-NQQTSRHQFLPQPA 233

Query: 228 PIMRLMLRDAMLRLRNNGYSILSLAMKVKYQELINLANMTVFALDDVSIFSGSYTYISNV 287
            I+RLMLRDAMLRLRNNG+SILSLA +VKY EL++L+NMT+FALDD SIFSGS++YIS++
Sbjct: 234 AIIRLMLRDAMLRLRNNGFSILSLATRVKYGELVSLSNMTIFALDDASIFSGSHSYISSI 293

Query: 288 RFHIIPNRYLTIGDLERLPVGTTLPTLARGQSLTVTTAGGASVTAPLRINYVRVKVPDVM 347
           RFHI+PN YL+  DLERLP+G TLPTL RGQSL VTT+     T P+RINYVR+KVPD++
Sbjct: 294 RFHIVPNVYLSAADLERLPLGATLPTLERGQSLVVTTSSAGGTTVPMRINYVRLKVPDII 353

Query: 348 KNLKIVVHGIYLPFPHLHPATV-FDGVIGVSGNADGGSDGGDPSIEGECSVMDEHGIGSC 406
           +NLKIVVH +YLPFP + PA V FDG++GV  +  G       ++ G CS +D    G+C
Sbjct: 354 RNLKIVVHSVYLPFPRIDPAAVAFDGILGVQSDTSGSVHA---AVGGSCSAVDMDENGTC 410

Query: 407 GG 408
            G
Sbjct: 411 VG 412

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357473961|ref|XP_003607265.1| Fasciclin-like arabinogalactan protein [Medicago truncatula] gi|355508320|gb|AES89462.1| Fasciclin-like arabinogalactan protein [Medicago truncatula]

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 257/423 (60%), Positives = 311/423 (73%), Gaps = 28/423 (6%)

Query: 6   TSLRF-LTILAIYLLIITKSAALTDVETLFTTTPPPQQTPPPPSDLNDQSSFFSHTAMLA 64
           +SLRF +   AI+   +     +T  E +  + PPP     PP DL + S FFSHTA+L 
Sbjct: 8   SSLRFSMLFFAIFFTAMLSGDVVTATEGIEASFPPP-----PPHDLQEHS-FFSHTALLP 61

Query: 65  PILSHLGFNELATAAPSLSNDAVATS--WSGPSTLFAPSDSSLHTCFSCSVPSLLREHLV 122
           PILSHLGF+ELATAAP+LS+ A  TS  W+GP T+FAPSD+S+ TCFSCSVP+LLREH+V
Sbjct: 62  PILSHLGFHELATAAPTLSDAATTTSLAWTGPFTIFAPSDASIRTCFSCSVPNLLREHIV 121

Query: 123 PGLFTIDYLRKLAFGTKIESLSPGRCITITSSKSENDTVS----KVFIGGVEITHPDLFN 178
           PG+FTI+YLR+LAFGTKIE+LSPGRC+T+TS     ++ S    KVFIGGVEIT PDLFN
Sbjct: 122 PGIFTIEYLRRLAFGTKIETLSPGRCVTVTSESIHPNSTSGGAPKVFIGGVEITQPDLFN 181

Query: 179 NGIIIIHGIQGYISPLSPLSCDVERMTSLSFPFQPSDR--GHHHQQIQTQQP-IMRLMLR 235
           NG++++HG+QG+ S LSP SCDVERMTSLSFPF P  R   H H    T  P IMRLMLR
Sbjct: 182 NGMVVVHGLQGFASTLSPFSCDVERMTSLSFPFHPDHRSSAHVHTPGATVLPAIMRLMLR 241

Query: 236 DAMLRLRNNGYSILSLAMKVKYQELINLANMTVFALDDVSIFSGSYTYISNVRFHIIPNR 295
           D  LRLRNNG+SILSLAMKVKY+ELI L NMT+FA+DD+SIFSGS +YISNVRFHIIPNR
Sbjct: 242 DTTLRLRNNGFSILSLAMKVKYEELITLNNMTIFAVDDLSIFSGSQSYISNVRFHIIPNR 301

Query: 296 YLTIGDLERLPVGTTLPTLARGQSLTVTTAGGASVTAPLRINYVRVKVPDVMKNLKIVVH 355
           YL+I DLE+LPVGT LPTL RGQ L +TT+GG    AP+RINYVRVKV DV++N+KIVVH
Sbjct: 302 YLSIADLEKLPVGTALPTLERGQPLLITTSGGGVTLAPMRINYVRVKVADVIRNVKIVVH 361

Query: 356 GIYLPFPHLHP-ATVFDGVI---------GVSGNADGGSDGGDPSIEGECSVMDEHGIGS 405
            +YLPFPH++P A  +D ++         GV   A   SD    + E  CS +D  G G 
Sbjct: 362 SVYLPFPHINPIADAYDTILGGEGASEGAGVGARAATVSDSAGQATEETCSALD--GRGG 419

Query: 406 CGG 408
           C  
Sbjct: 420 CAA 422

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357519561|ref|XP_003630069.1| Fasciclin-like arabinogalactan protein [Medicago truncatula] gi|355524091|gb|AET04545.1| Fasciclin-like arabinogalactan protein [Medicago truncatula]

 Score =  490 bits (1261), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 256/423 (60%), Positives = 309/423 (73%), Gaps = 28/423 (6%)

Query: 6   TSLRF-LTILAIYLLIITKSAALTDVETLFTTTPPPQQTPPPPSDLNDQSSFFSHTAMLA 64
           +S+RF +   AI+   +     +T  E +  + PPP     PP DL + S FFS TA+L 
Sbjct: 8   SSMRFSMLFFAIFFTAMLSGDEVTATEGIEASFPPP-----PPHDLQEHS-FFSQTALLP 61

Query: 65  PILSHLGFNELATAAPSLSNDAVATS--WSGPSTLFAPSDSSLHTCFSCSVPSLLREHLV 122
           PILSHLGF+ELATAAPSLS+ A  TS  W+GP T+FAPSD+SL TCFSCSVP+LLREH+V
Sbjct: 62  PILSHLGFHELATAAPSLSDAATTTSPAWTGPFTIFAPSDASLRTCFSCSVPNLLREHIV 121

Query: 123 PGLFTIDYLRKLAFGTKIESLSPGRCITITSSKSENDTVS----KVFIGGVEITHPDLFN 178
           PG+FTI+YLR+LAFGTKIE+LSPGRC+T+TS     +  S    KVFIGGVEIT PDLFN
Sbjct: 122 PGIFTIEYLRRLAFGTKIETLSPGRCVTVTSESIHQNNTSGSAPKVFIGGVEITQPDLFN 181

Query: 179 NGIIIIHGIQGYISPLSPLSCDVERMTSLSFPFQPSDR--GHHHQQIQTQQP-IMRLMLR 235
           NG++++HG+QG+ S LSP SCDVERM+SLSFPF P  R   H H    T  P IMRLMLR
Sbjct: 182 NGMVVVHGLQGFASKLSPFSCDVERMSSLSFPFHPDHRSGAHVHTPGATVLPAIMRLMLR 241

Query: 236 DAMLRLRNNGYSILSLAMKVKYQELINLANMTVFALDDVSIFSGSYTYISNVRFHIIPNR 295
           DAM+RLRNNG+SILSLAMKVKY ELI L NMT+FA+DD+SIFSGS +YISNVRFHIIPN 
Sbjct: 242 DAMVRLRNNGFSILSLAMKVKYAELITLNNMTIFAVDDLSIFSGSQSYISNVRFHIIPNH 301

Query: 296 YLTIGDLERLPVGTTLPTLARGQSLTVTTAGGASVTAPLRINYVRVKVPDVMKNLKIVVH 355
           YL+I DLE+LPVGT LPTL RGQ L +TT+GG   +AP+RINYVRVKV DV++N+KIVVH
Sbjct: 302 YLSIADLEKLPVGTALPTLERGQPLLITTSGGGVTSAPMRINYVRVKVADVIRNVKIVVH 361

Query: 356 GIYLPFPHLHP-ATVFDGVI---------GVSGNADGGSDGGDPSIEGECSVMDEHGIGS 405
            +YLPFPH++P A  +D ++         GV   A   SD    + E  CS  D  G G 
Sbjct: 362 SVYLPFPHINPIAAAYDTILGGEGASEGAGVGARAATVSDSAGQATEETCSAPD--GRGG 419

Query: 406 CGG 408
           C  
Sbjct: 420 CAA 422

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357519729|ref|XP_003630153.1| Fasciclin-like arabinogalactan protein [Medicago truncatula] gi|357519789|ref|XP_003630183.1| Fasciclin-like arabinogalactan protein [Medicago truncatula] gi|355524175|gb|AET04629.1| Fasciclin-like arabinogalactan protein [Medicago truncatula] gi|355524205|gb|AET04659.1| Fasciclin-like arabinogalactan protein [Medicago truncatula]

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 255/422 (60%), Positives = 309/422 (73%), Gaps = 27/422 (6%)

Query: 6   TSLRFLTILAIYLLIITKSAALTDVETLFTTTPPPQQTPPPPSDLNDQSSFFSHTAMLAP 65
           +SLRF  + AI+  ++     +T  E    + PP      PP DL + S FFSHT +L P
Sbjct: 8   SSLRFSMLFAIFFTVMLSGDKVTATEGFEPSIPPL-----PPHDLQEHS-FFSHTTLLPP 61

Query: 66  ILSHLGFNELATAAPSLSNDA--VATSWSGPSTLFAPSDSSLHTCFSCSVPSLLREHLVP 123
           ILSHLGF+ELATAAPSLS+ A   +++W+GPST+FAPSD+SL TCFSCSVP+LLREH+VP
Sbjct: 62  ILSHLGFHELATAAPSLSDAATTASSAWTGPSTIFAPSDASLRTCFSCSVPNLLREHIVP 121

Query: 124 GLFTIDYLRKLAFGTKIESLSPGRCITITSSKSENDTVS----KVFIGGVEITHPDLFNN 179
           GLFTI+YLR L FGTKIE+LSPGRCIT+TS    ++  +    KVFIGGVEI  PDLFNN
Sbjct: 122 GLFTIEYLRTLPFGTKIETLSPGRCITVTSDSIHSNITTGGAPKVFIGGVEIAQPDLFNN 181

Query: 180 GIIIIHGIQGYISPLSPLSCDVERMTSLSFPFQPSDR--GHHHQQIQTQQP-IMRLMLRD 236
           G++++HG+QG++S LSP SCDVERMTSLSFPF P  R   H H    T  P IMRLMLRD
Sbjct: 182 GMVVVHGLQGFVSTLSPFSCDVERMTSLSFPFHPDHRSSAHVHTHGVTVLPAIMRLMLRD 241

Query: 237 AMLRLRNNGYSILSLAMKVKYQELINLANMTVFALDDVSIFSGSYTYISNVRFHIIPNRY 296
           AMLRLRNNG+SILSLAMKVKY ELI L NMT+FA+DD+SIFSGS +YISNVRFHIIPN Y
Sbjct: 242 AMLRLRNNGFSILSLAMKVKYAELITLNNMTIFAVDDLSIFSGSQSYISNVRFHIIPNYY 301

Query: 297 LTIGDLERLPVGTTLPTLARGQSLTVTTAGGASVTAPLRINYVRVKVPDVMKNLKIVVHG 356
           L+I DLE+LPVGT LPTL RGQ L +TT+GG   +AP+RINYVRVKV DV++N+KIVVH 
Sbjct: 302 LSIADLEKLPVGTALPTLERGQPLLITTSGGGVTSAPMRINYVRVKVADVIRNVKIVVHS 361

Query: 357 IYLPFPHLHP-ATVFDGVI---------GVSGNADGGSDGGDPSIEGECSVMDEHGIGSC 406
           +YLPFPH++P A  +D ++         GV   A    D    + E  CS +D  G G C
Sbjct: 362 VYLPFPHINPIAAAYDTILGGEGASEGAGVGAGASTLLDSPGQATEETCSALD--GRGGC 419

Query: 407 GG 408
             
Sbjct: 420 AA 421

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147787729|emb|CAN60831.1| hypothetical protein VITISV_004737 [Vitis vinifera]

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 209/407 (51%), Positives = 279/407 (68%), Gaps = 19/407 (4%)

Query: 4   LSTSLRFLTILAIYLLIITKSAALTDVETLFTTTPPPQQTPPPPSDLNDQSSFFSHTAML 63
           ++T L+   ++ ++  +++ + A    E    +T  PQ + P      ++   F   ++ 
Sbjct: 1   MATLLQLPILILMFSFLMSTAIANILFEEASASTSAPQHSXPSQLFQPNKDDQFYGASVF 60

Query: 64  APILSHLGFNELATAAPSLSNDAVATSWSGPSTLFAPSDSSLHTCFSCSVPSLLREHLVP 123
            P+L  LGF ELA A  SLS  +   +W+GPST+FAP+D+S+ +C SCSV  LL+EH VP
Sbjct: 61  GPVLHSLGFQELAMAVHSLSASSSFNTWTGPSTVFAPTDASIRSCSSCSVTRLLQEHTVP 120

Query: 124 GLFTIDYLRKLAFGTKIESLSPGRCITITSSKSENDTVSKVFIGGVEITHPDLFNNGIII 183
           G+F++ YL+ LAFGTKIE++ PGRC+T+TS+ +     +K+FIGGVEITHPDLFNNG+I+
Sbjct: 121 GIFSLHYLQTLAFGTKIETMVPGRCLTVTSAVNN----TKIFIGGVEITHPDLFNNGLIV 176

Query: 184 IHGIQGYISPLSPLSCDVERMTSLSFPFQPSDRGHHHQQIQTQQPIMRLMLRDAMLRLRN 243
           +HG+ G++S LSP SC++ER+ S+SFPFQPSDR H          IMRLMLRDAM+RLR 
Sbjct: 177 VHGLDGFVSHLSPFSCNIERVNSVSFPFQPSDRSHSVPSFA----IMRLMLRDAMVRLRM 232

Query: 244 NGYSILSLAMKVKYQELINLANMTVFALDDVSIFSGSYTYISNVRFHIIPNRYLTIGDLE 303
           NG+SIL+LA+++KY EL++L NMTVF LDD SIF+G   Y+SNVRFHI+PNR L   DL+
Sbjct: 233 NGFSILALALRLKYPELVSLQNMTVFTLDDASIFTGGQAYVSNVRFHIVPNRLLLAADLQ 292

Query: 304 RLPVGTTLPTLARGQSLTVTTAGGASVTAPLRINYVRVKVPDVMKNLKIVVHGIYLPFPH 363
           +LPV T LPTL   Q L VTTAGG ++  P+RINYVR+K PDVM NLKIVVH +Y+PFPH
Sbjct: 293 KLPVATLLPTLEPDQKLKVTTAGGXAM--PIRINYVRIKKPDVMHNLKIVVHDLYMPFPH 350

Query: 364 LHPA-TVFDGVIGVSGNADGGSDGGDPSI--EGECSVMDEHGIGSCG 407
           LH A  V DG+         G DG +  I     CSV    G GSC 
Sbjct: 351 LHQAEAVVDGI------GPLGLDGAEMEIPVNKSCSVAGTDGSGSCA 391

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424518|ref|XP_002281810.1| PREDICTED: uncharacterized protein LOC100247334 [Vitis vinifera] gi|297737558|emb|CBI26759.3| unnamed protein product [Vitis vinifera]

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 209/407 (51%), Positives = 279/407 (68%), Gaps = 19/407 (4%)

Query: 4   LSTSLRFLTILAIYLLIITKSAALTDVETLFTTTPPPQQTPPPPSDLNDQSSFFSHTAML 63
           ++T L+   ++ ++  +++ + A    E    +T  PQ + P      ++   F   ++ 
Sbjct: 1   MATLLQLPILILMFSFLMSTAIANILFEEASASTSAPQHSRPSQLFQPNKDDQFYGASVF 60

Query: 64  APILSHLGFNELATAAPSLSNDAVATSWSGPSTLFAPSDSSLHTCFSCSVPSLLREHLVP 123
            P+L  LGF ELA A  SLS  +   +W+GPST+FAP+D+S+ +C SCSV  LL+EH VP
Sbjct: 61  GPVLHSLGFQELAMAVHSLSASSSFNTWTGPSTVFAPTDASIRSCSSCSVTRLLQEHTVP 120

Query: 124 GLFTIDYLRKLAFGTKIESLSPGRCITITSSKSENDTVSKVFIGGVEITHPDLFNNGIII 183
           G+F++ YL+ LAFGTKIE++ PGRC+T+TS+ +     +K+FIGGVEITHPDLFNNG+I+
Sbjct: 121 GIFSLHYLQTLAFGTKIETMVPGRCLTVTSAVNN----TKIFIGGVEITHPDLFNNGLIV 176

Query: 184 IHGIQGYISPLSPLSCDVERMTSLSFPFQPSDRGHHHQQIQTQQPIMRLMLRDAMLRLRN 243
           +HG+ G++S LSP SC++ER+ S+SFPFQPSDR H          IMRLMLRDAM+RLR 
Sbjct: 177 VHGLDGFVSHLSPFSCNIERVNSVSFPFQPSDRSHSVPSFA----IMRLMLRDAMVRLRM 232

Query: 244 NGYSILSLAMKVKYQELINLANMTVFALDDVSIFSGSYTYISNVRFHIIPNRYLTIGDLE 303
           NG+SIL+LA+++KY EL++L NMTVF LDD SIF+G   Y+SNVRFHI+PNR L   DL+
Sbjct: 233 NGFSILALALRLKYPELVSLQNMTVFTLDDASIFTGGQAYVSNVRFHIVPNRLLLAADLQ 292

Query: 304 RLPVGTTLPTLARGQSLTVTTAGGASVTAPLRINYVRVKVPDVMKNLKIVVHGIYLPFPH 363
           +LPV T LPTL   Q L VTTAGG ++  P+RINYVR+K PDVM NLKIVVH +Y+PFPH
Sbjct: 293 KLPVATLLPTLEPDQKLKVTTAGGGAM--PIRINYVRIKKPDVMHNLKIVVHDLYMPFPH 350

Query: 364 LHPA-TVFDGVIGVSGNADGGSDGGDPSI--EGECSVMDEHGIGSCG 407
           LH A  V DG+         G DG +  I     CSV    G GSC 
Sbjct: 351 LHQAEAVVDGI------GPLGLDGAEMEIPVNKSCSVAGTDGSGSCA 391

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737551|emb|CBI26752.3| unnamed protein product [Vitis vinifera]

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 214/402 (53%), Positives = 265/402 (65%), Gaps = 30/402 (7%)

Query: 15  AIYLLIITKSAALTDVETLFTTTPPPQQTPPPPSDLNDQSSFFSHTAMLAPILSHLGFNE 74
           AI +L    S A+   E   T  PPP      P D       FS T++LAPIL +LGF E
Sbjct: 8   AILVLSFLVSTAMAAEEASSTIAPPPTILFQQPGD-----QPFSATSLLAPILINLGFQE 62

Query: 75  LATAAPSLSNDAVATSWSGPSTLFAPSDSSLHTCFSCSVPSLLREHLVPGLFTIDYLRKL 134
            A A  +LS      +W+GPST+FA +DSS+H+C SCS+P LL+EH VPGLF+  +LR L
Sbjct: 63  FAMAVHALSAAPTLNTWTGPSTIFALTDSSIHSCPSCSIPRLLQEHTVPGLFSSHHLRNL 122

Query: 135 AFGTKIESLSPGRCITITSSKSENDTVSKVFIGGVEITHPDLFNNGIIIIHGIQGYISPL 194
           AFGTKIE+  PGRCIT+TS+ +     SK+FI GVEITHPDLFNNG I++HG+ G+ S L
Sbjct: 123 AFGTKIETSFPGRCITVTSASNN----SKIFIEGVEITHPDLFNNGFILVHGLDGFASHL 178

Query: 195 SPLSCDVERMTSLSF-PFQPSDRGHHHQQIQTQQPIMRLMLRDAMLRLRNNGYSILSLAM 253
           SP SC+VER  +LSF P QPSD      Q+     ++RLML DAMLRLR +G+ IL+LAM
Sbjct: 179 SPFSCNVERFATLSFSPPQPSDS----PQVPPPFSVIRLMLSDAMLRLRISGFGILALAM 234

Query: 254 KVKYQELINLANMTVFALDDVSIFSGSYTYISNVRFHIIPNRYLTIGDLERLPVGTTLPT 313
           +VKY EL+ L NMTVFALDD +IFSG   YISNVRFHI+PN  L   DL +LPV T LPT
Sbjct: 235 RVKYSELVQLQNMTVFALDDATIFSGGREYISNVRFHIVPNMLLMADDLNKLPVQTVLPT 294

Query: 314 LARGQSLTVTTAGGASVTAPLRINYVRVKVPDVMKNLKIVVHGIYLPFPHLHPATVFDGV 373
           L  GQ+L VT  GG S   P+RINYVR+K PD++ NLKIVVH ++LPFPHL P    +G 
Sbjct: 295 LEHGQTLKVTDGGGGS--NPMRINYVRLKSPDIVHNLKIVVHSLFLPFPHLQPRV--EGT 350

Query: 374 IGVSGNADG----GSDGG----DPSIE----GECSVMDEHGI 403
            G+  NA G     S+G     DP+ E     E  + D HG+
Sbjct: 351 EGLEWNAAGPDVMESNGEMVDMDPTREIIPTDEIEIEDHHGL 392

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	409
TAIR|locus:2169464	353	FLA21 "AT5G06920" [Arabidopsis	0.689	0.798	0.254	2.6e-09
TAIR|locus:2037873	248	AT1G15190 "AT1G15190" [Arabido	0.195	0.322	0.356	0.00062

TAIR|locus:2169464 FLA21 "AT5G06920" [Arabidopsis thaliana (taxid:3702)]

 Score = 161 (61.7 bits), Expect = 2.6e-09, P = 2.6e-09
 Identities = 80/314 (25%), Positives = 122/314 (38%)

Query:    67 LSHLGFNELATAAPSLSNDAVATSWSGPSTLFAPSD------SSLHTCFSCSVPSLLREH 120
             L    F  +AT    +S +   +S S  +TLFA  D      SSLH  F   +  LL  H
Sbjct:    56 LRQSNFKAIATLL-HISPEIFLSS-SPNTTLFAIEDASFFNTSSLHPLF---LKQLLHYH 110

Query:   121 LVPGLFTIDYLRKLAFGTKIESLSPGRCITITSSKSENDTVSKVFIGGVEITHPDLFNNX 180
              +P + ++D L K   GT + +L   + + I++   E+ T     +  V ITHPD+F   
Sbjct:   111 TLPLMLSMDDLLKKPQGTCLPTLLHHKSVQISTVNQESRTAE---VNHVRITHPDMFLGD 167

Query:   181 XXXXXXXXXXXSPLSPLSCDVERMTSLSFPFQPSDRGXXXXXXXXXXPIXXXXXXXXXXX 240
                        SPL P S  +     +  P   SD            P+           
Sbjct:   168 SLVIHGVIGPFSPLQPHSDHL-----IHTPLCQSDT-TNKTSNNEEVPVSIDWTRIVQLL 221

Query:   241 XXNNGYSILSLAMKVKYQELIN-------LANMTVFALDD-VSIFSGSYTYISNVRFHII 292
               +NG+   ++ +      ++N       L  +T+ A  + VS+ S S      VR HI+
Sbjct:   222 S-SNGFVPFAIGLHSVLNRIVNDHNHHKNLTGVTILATPNLVSLSSASPFLYEVVRHHIL 280

Query:   293 PNRYLTIGDLERLPVGTTLPTLARGQSLXXXXXXXXXXXXPLRINYVRVKVPDVMKNLKI 352
               R LT  D   +    T+ TL   Q L               I+ V +  PD+  +   
Sbjct:   281 VQR-LTYKDFASMSDKATVKTLDPYQDLTITRRNVNSSGGDFMISGVEIVDPDMFSSSNF 339

Query:   353 VVHGIY--LPFPHL 364
             V+HGI   L  PH+
Sbjct:   340 VIHGISHTLEIPHV 353

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2037873 AT1G15190 "AT1G15190" [Arabidopsis thaliana (taxid:3702)]

 Score = 111 (44.1 bits), Expect = 0.00062, P = 0.00062
 Identities = 31/87 (35%), Positives = 47/87 (54%)

Query:    96 TLFAPSDSSLHTC-FSCSVP---SLLREHLVPGLFTIDYLRKLAFGTKIESLSPGRCITI 151
             TLFAP+DS L     + S+P   S LR H VP   ++  LR L   + + +L P   + +
Sbjct:    70 TLFAPTDSMLFDLDMTHSLPFYVSTLRLHSVPLRLSLSGLRSLPNSSSLPTLLPSHRLLL 129

Query:   152 TSSKSENDTVSKVFIGGVEITHPDLFN 178
             T   S ND++   F+ GV++  P LF+
Sbjct:   130 TKHSSSNDSI---FLDGVQLLIPGLFD 153


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.135   0.400    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      409       318   0.00083  116 3  11 22  0.38    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  602 (64 KB)
  Total size of DFA:  198 KB (2112 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.32u 0.11s 21.43t   Elapsed:  00:00:02
  Total cpu time:  21.32u 0.11s 21.43t   Elapsed:  00:00:02
  Start:  Tue May 21 04:28:32 2013   End:  Tue May 21 04:28:34 2013

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	409
smart00554	97	smart00554, FAS1, Four repeated domains in the Fas	9e-06
smart00554	97	smart00554, FAS1, Four repeated domains in the Fas	4e-04
pfam02469	123	pfam02469, Fasciclin, Fasciclin domain	0.004

>gnl|CDD|214719 smart00554, FAS1, Four repeated domains in the Fasciclin I family of proteins, present in many other contexts

 Score = 43.5 bits (103), Expect = 9e-06
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 9/73 (12%)

Query: 285 SNVRFHIIPNRYLTIGDLERLPVGTTLPTLARGQSLTVTTAGGASVTAPLRINYVRVKVP 344
           + + +H++P R         L  G TLPTLA G  L +T +GG+     + +N  R+   
Sbjct: 27  NLLLYHVVPGRLS----SADLLNGGTLPTLA-GSKLRITRSGGSGT---VTVNGARIVEA 78

Query: 345 DVMKNLKIVVHGI 357
           D+      VVH I
Sbjct: 79  DIAAT-NGVVHVI 90

Length = 97

>gnl|CDD|214719 smart00554, FAS1, Four repeated domains in the Fasciclin I family of proteins, present in many other contexts

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 27/110 (24%), Positives = 44/110 (40%), Gaps = 24/110 (21%)

Query: 96  TLFAPSDS----------SLHTCFSCSVPSLLREHLVPGLFTIDYLRKLAFGTKIESLSP 145
           T+FAP+D           SL       + +LL  H+VPG  +   L     G  + +L+ 
Sbjct: 1   TVFAPTDEAFQKLPPDLNSLLADK---LKNLLLYHVVPGRLSSADLLN---GGTLPTLAG 54

Query: 146 GRCITITSSKSENDTVSKVFIGGVEITHPDLF-NNGIIIIHGIQGYISPL 194
            + + IT     +     V + G  I   D+   NG  ++H I   + P 
Sbjct: 55  SK-LRIT----RSGGSGTVTVNGARIVEADIAATNG--VVHVIDRVLLPP 97

Length = 97

>gnl|CDD|217054 pfam02469, Fasciclin, Fasciclin domain

 Score = 36.9 bits (86), Expect = 0.004
 Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 23/106 (21%)

Query: 93  GPSTLFAPSDSSLH----------TCFSCSVPSLLREHLVPGLFTIDYLRKLAFGTKIES 142
           GP T+FAP+D +                  + +LL+ H+VPG  T   L+    G  + +
Sbjct: 24  GPFTVFAPTDEAFAKLPAGTLNFLLKDKEQLKNLLKYHVVPGRLTSSDLKN---GGTLAT 80

Query: 143 LSPGRCITITSSKSENDTVSKVFIGGVEITHPDL-FNNGIIIIHGI 187
           L   + + +        T   V + G  +   D+   NG  +IH I
Sbjct: 81  LQGSK-LRVNV------TGGTVTVNGARVVQSDIEATNG--VIHVI 117

This extracellular domain is found repeated four times in grasshopper fasciclin I as well as in proteins from mammals, sea urchins, plants, yeast and bacteria. Length = 123

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	409
COG2335	187	Secreted and surface protein containing fasciclin-	99.81
COG2335	187	Secreted and surface protein containing fasciclin-	99.74
smart00554	99	FAS1 Four repeated domains in the Fasciclin I fami	99.72
PF02469	128	Fasciclin: Fasciclin domain; InterPro: IPR000782 T	99.71
KOG1437	682	consensus Fasciclin and related adhesion glycoprot	99.71
smart00554	99	FAS1 Four repeated domains in the Fasciclin I fami	99.64
PF02469	128	Fasciclin: Fasciclin domain; InterPro: IPR000782 T	99.56
KOG1437	682	consensus Fasciclin and related adhesion glycoprot	99.38

>COG2335 Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer membrane]

Probab=99.81  E-value=3.9e-20  Score=169.80  Aligned_cols=115  Identities=23%  Similarity=0.349  Sum_probs=97.7

Q ss_pred             HhcCcHHHHHHhhccCcccccccCCCCeEEEeeCChhhhcCCC------------CChhHHhhhcccCCccchHHHhccc
Q 041188           68 SHLGFNELATAAPSLSNDAVATSWSGPSTLFAPSDSSLHTCFS------------CSVPSLLREHLVPGLFTIDYLRKLA  135 (409)
Q Consensus        68 ~~~Gft~la~lL~~~~~~~~~l~~~g~~TIFAPtD~AF~~l~~------------~~L~~LL~yHVvpg~~~~~~L~~l~  135 (409)
                      ...-|++|..+++.++ +-+++.+.|+||||||+|+||++++.            ..|.++|.|||++|+++.+++.+. 
T Consensus        56 ~~~~f~tl~~a~~aa~-Lv~~L~~~gp~TVFaPtn~AFa~lp~~T~~~Ll~pen~~~L~~iLtYHVv~Gk~~~~~l~~~-  133 (187)
T COG2335          56 NNPSFTTLVAALKAAG-LVDTLNETGPFTVFAPTNEAFAKLPAGTLDALLKPENKPLLTKILTYHVVEGKITAADLKSS-  133 (187)
T ss_pred             cCcchHHHHHHHHhhh-hHHHhcCCCCeEEecCCHHHHHhCChhHHHHHhCccchhhhheeeEEEEEcCcccHHHhhcc-
Confidence            3344999999999998 44667889999999999999999984            247889999999999999999863 


Q ss_pred             CCCeeeccCCCceEEEeeCCCCccccceEEEccEEEeCcccc-cCCceEEEEecCccCCCC
Q 041188          136 FGTKIESLSPGRCITITSSKSENDTVSKVFIGGVEITHPDLF-NNGIIIIHGIQGYISPLS  195 (409)
Q Consensus       136 ~g~~i~Tll~g~~L~Vt~~~~~~~~~~~v~Vnga~Vt~~Di~-~ng~~VIH~ID~VL~P~~  195 (409)
                        ..+.| +.|..++|...+      ++++||+++|+.+|+. .||  |||+||+||.|+.
T Consensus       134 --~~v~t-~~G~~~~i~~~~------~~~~Vn~a~v~~~di~a~Ng--vIhvID~Vl~Pp~  183 (187)
T COG2335         134 --GSVKT-VQGADLKIKVTG------GGVYVNDATVTIADINASNG--VIHVIDKVLIPPM  183 (187)
T ss_pred             --cccee-ecCceEEEEEcC------CcEEEeeeEEEeccEeccCc--EEEEEeeeccCCC
Confidence              35666 489999998776      4599999999999986 455  9999999999985

>COG2335 Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer membrane]

Probab=99.74  E-value=8.4e-18  Score=154.45  Aligned_cols=122  Identities=21%  Similarity=0.352  Sum_probs=98.3

Q ss_pred             HHHHHHHH-HhcChhHHHHHHHHh-H-HHHhccCCcEEEecCccccccCC------------cccc-ccceeeeecCccc
Q 041188          234 LRDAMLRL-RNNGYSILSLAMKVK-Y-QELINLANMTVFALDDVSIFSGS------------YTYI-SNVRFHIIPNRYL  297 (409)
Q Consensus       234 ~~~~~~~L-~~~gfs~~a~lL~~~-l-~~l~~~~~~TVFAPtD~Af~~~~------------~~~l-~iL~yHVVpg~~L  297 (409)
                      .+++++.. ....|+++..+++.. | +.+...++||||||+|+||.++.            .+++ ++|.||||+|+ +
T Consensus        47 ~~~iV~~a~~~~~f~tl~~a~~aa~Lv~~L~~~gp~TVFaPtn~AFa~lp~~T~~~Ll~pen~~~L~~iLtYHVv~Gk-~  125 (187)
T COG2335          47 RADIVESAANNPSFTTLVAALKAAGLVDTLNETGPFTVFAPTNEAFAKLPAGTLDALLKPENKPLLTKILTYHVVEGK-I  125 (187)
T ss_pred             hhHHHHHHccCcchHHHHHHHHhhhhHHHhcCCCCeEEecCCHHHHHhCChhHHHHHhCccchhhhheeeEEEEEcCc-c
Confidence            34567754 556699999998854 5 55788899999999999997652            3455 89999999999 5


Q ss_pred             ChhhhccCCCCcccccccCCceEEEEEcCCcccccceEEccEEEecCceeecCCeEEEEec-CcCCCCCC
Q 041188          298 TIGDLERLPVGTTLPTLARGQSLTVTTAGGASVTAPLRINYVRVKVPDVMKNLKIVVHGIY-LPFPHLHP  366 (409)
Q Consensus       298 ~~~dL~~l~~g~~l~TLl~g~~L~vt~~~g~~~~~~l~VN~a~Vv~pDi~~~~~~VVHgId-~l~p~~~~  366 (409)
                      +.+|+.+   .....|+ +|..+.|...+++     ++||.++|+.+|+..+| ||||.|| +++|+...
T Consensus       126 ~~~~l~~---~~~v~t~-~G~~~~i~~~~~~-----~~Vn~a~v~~~di~a~N-gvIhvID~Vl~Pp~~~  185 (187)
T COG2335         126 TAADLKS---SGSVKTV-QGADLKIKVTGGG-----VYVNDATVTIADINASN-GVIHVIDKVLIPPMDL  185 (187)
T ss_pred             cHHHhhc---cccceee-cCceEEEEEcCCc-----EEEeeeEEEeccEeccC-cEEEEEeeeccCCCcc
Confidence            8888854   4457787 7889999988777     99999999999997765 6999999 88888754

>smart00554 FAS1 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts

Probab=99.72  E-value=7.5e-18  Score=139.18  Aligned_cols=90  Identities=27%  Similarity=0.425  Sum_probs=76.2

Q ss_pred             EEEeeCChhhhcCCCC---------ChhHHhhhcccCCccchHHHhcccCCCeeeccCCCceEEEeeCCCCccccceEEE
Q 041188           96 TLFAPSDSSLHTCFSC---------SVPSLLREHLVPGLFTIDYLRKLAFGTKIESLSPGRCITITSSKSENDTVSKVFI  166 (409)
Q Consensus        96 TIFAPtD~AF~~l~~~---------~L~~LL~yHVvpg~~~~~~L~~l~~g~~i~Tll~g~~L~Vt~~~~~~~~~~~v~V  166 (409)
                      |||||+|+||++++..         .++++|+||++|+++..++|.+   +..++|+. |..++++..+.    .+.+++
T Consensus         1 TvfaP~d~Af~~~~~~~~~~l~~~~~l~~ll~~Hiv~~~~~~~~l~~---~~~~~Tl~-g~~l~v~~~~~----~~~i~i   72 (99)
T smart00554        1 TVFAPTDEAFQKLPPGTLNSLLADPKLKNLLLYHVVPGRLSSADLLN---GGTLPTLA-GSKLRVTRSGD----SGTVTV   72 (99)
T ss_pred             CEeCcCHHHHHhcCHHHHHHHhCCHHHHHHHHhcEeCceEcHHHhcc---CCccccCC-CCEEEEEEeCC----CCeEEE
Confidence            8999999999987641         5789999999999999999986   56788874 88899987651    268999


Q ss_pred             ccEEEeCcccccCCceEEEEecCccCCC
Q 041188          167 GGVEITHPDLFNNGIIIIHGIQGYISPL  194 (409)
Q Consensus       167 nga~Vt~~Di~~ng~~VIH~ID~VL~P~  194 (409)
                      |+++|+.+|+..+ +|+||+||+||.|+
T Consensus        73 n~~~v~~~di~~~-nGvih~Id~vL~P~   99 (99)
T smart00554       73 NGARIVEADIAAT-NGVVHVIDRVLLPP   99 (99)
T ss_pred             cceEEEECCEecC-CeEEEEECceeCCC
Confidence            9999999999752 35999999999985

>PF02469 Fasciclin: Fasciclin domain; InterPro: IPR000782 The FAS1 (fasciclin-like) domain is an extracellular module of about 140 amino acid residues

Probab=99.71  E-value=7.1e-18  Score=144.84  Aligned_cols=115  Identities=24%  Similarity=0.366  Sum_probs=87.6

Q ss_pred             CcHHHHHHhhccCcccccc-cCCCCeEEEeeCChhhhcCCC----------CChhHHhhhcccCCccchHHHhcccCCCe
Q 041188           71 GFNELATAAPSLSNDAVAT-SWSGPSTLFAPSDSSLHTCFS----------CSVPSLLREHLVPGLFTIDYLRKLAFGTK  139 (409)
Q Consensus        71 Gft~la~lL~~~~~~~~~l-~~~g~~TIFAPtD~AF~~l~~----------~~L~~LL~yHVvpg~~~~~~L~~l~~g~~  139 (409)
                      .|+.|+++|+.+++. +.+ ...+++|||||+|+||++++.          ..+.++|+||++++.+..++|...  ...
T Consensus         2 ~~s~f~~~l~~~~l~-~~l~~~~~~~TvfaP~d~a~~~~~~~~~~~~~~~~~~l~~~l~~hiv~~~~~~~~l~~~--~~~   78 (128)
T PF02469_consen    2 DLSTFSRLLEQAGLA-DLLNDSDGNYTVFAPTDDAFQKLSQETNSSLADSKEQLKSLLKYHIVPGSITSSDLRNG--KQT   78 (128)
T ss_dssp             TTHHHHHHHHHTTCH-HHHGCSSSSEEEEEE-HHHHHHSHHHHHHHHHTHHHHHHHHHHHTEEES---HCHHHCH--HEE
T ss_pred             CHHHHHHHHHHcCCH-HHHhcCCCCEEEEEECHHHHHhccccccchhhhhhhhHhhhhhhEEEcCceehhhhccc--ccc
Confidence            477888888888744 444 566899999999999987742          247899999999999999999863  257


Q ss_pred             eeccCCCceEEEeeCCCCccccceEEEcc-EEEeCcccccCCceEEEEecCccCC
Q 041188          140 IESLSPGRCITITSSKSENDTVSKVFIGG-VEITHPDLFNNGIIIIHGIQGYISP  193 (409)
Q Consensus       140 i~Tll~g~~L~Vt~~~~~~~~~~~v~Vng-a~Vt~~Di~~ng~~VIH~ID~VL~P  193 (409)
                      +.|+..|..+.|+...    ..+.++||+ ++|+..|+.. .+|+||+||+||.|
T Consensus        79 ~~t~~~g~~~~v~~~~----~~~~~~v~~~a~i~~~~~~~-~nG~ih~id~vL~P  128 (128)
T PF02469_consen   79 LETLLNGQPLRVSSSP----SNGTIYVNGKARIVKSDIEA-SNGVIHIIDDVLIP  128 (128)
T ss_dssp             EEBSSTTCEEEEEEEG----GTTEEEECCEEEESEEEEEE-SSEEEEEESS-TSS
T ss_pred             ceeccCCCEEEEEEEe----cCCceEecCceEEEeCCEEe-CCEEEEEECceECc
Confidence            8886689999998762    136899999 9999999863 23599999999998

It has been suggested that the FAS1 domain represents an ancient cell adhesion domain common to plants and animals []; related FAS1 domains are also found in bacteria []. The crystal structure of FAS1 domains 3 and 4 of fasciclin I from Drosophila melanogaster (Fruit fly) has been determined, revealing a novel domain fold consisting of a seven-stranded beta wedge and at least five alpha helices; two well-ordered N-acetylglucosamine groups attached to a conserved asparagine are located in the interface region between the two FAS1 domains []. Fasciclin I is an insect neural cell adhesion molecule involved in axonal guidance that is attached to the membrane by a GPI-anchored protein. FAS1 domains are present in many secreted and membrane-anchored proteins. These proteins are usually GPI anchored and consist of: (i) a single FAS1 domain, (ii) a tandem array of FAS1 domains, or (iii) FAS1 domain(s) interspersed with other domains. Proteins known to contain a FAS1 domain include: Fasciclin I (4 FAS1 domains). Human TGF-beta induced Ig-H3 (BIgH3) protein (4 FAS1 domains), where the FAS1 domains mediate cell adhesion through an interaction with alpha3/beta1 integrin; mutation in the FAS1 domains result in corneal dystrophy []. Volvox major cell adhesion protein (2 FAS1 domains) []. Arabidopsis fasciclin-like arabinogalactan proteins (2 FAS1 domains) []. Mammalian stabilin protein, a family of fasciclin-like hyaluronan receptor homologues (7 FAS1 domains)[]. Human extracellular matrix protein periostin (4 FAS1 domains). Bacterial immunogenic protein MPT70 (1 FAS1 domain) []. The FAS1 domains of both human periostin (Q15063 from SWISSPROT) and BIgH3 (Q15582 from SWISSPROT) proteins were found to contain vitamin K-dependent gamma-carboxyglutamate residues []. Gamma-carboxyglutamate residues are more commonly associated with GLA domains (IPR000294 from INTERPRO), where they occur through post-translational modification catalysed by the vitamin K-dependent enzyme gamma-glutamylcarboxylase.; PDB: 1O70_A 1W7D_A 1W7E_A 1NYO_A 1X3B_A 2VXP_A.

>KOG1437 consensus Fasciclin and related adhesion glycoproteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=99.71  E-value=1.5e-16  Score=170.41  Aligned_cols=247  Identities=19%  Similarity=0.222  Sum_probs=164.1

Q ss_pred             hhhHHHHHHhcCcHHHHHHhhccCcccccccCCCCeEEEeeCChhhhcCCCC----ChhHHhhhcccCCccchHHHhccc
Q 041188           60 TAMLAPILSHLGFNELATAAPSLSNDAVATSWSGPSTLFAPSDSSLHTCFSC----SVPSLLREHLVPGLFTIDYLRKLA  135 (409)
Q Consensus        60 ~~~l~~~L~~~Gft~la~lL~~~~~~~~~l~~~g~~TIFAPtD~AF~~l~~~----~L~~LL~yHVvpg~~~~~~L~~l~  135 (409)
                      ..++.++..+...+++.+++...+++ +.+..++.+|+|+|.|+||+++...    .+..+|.||++|.+...++..+. 
T Consensus       373 ~~~l~~La~e~~~st~~rlv~elgll-~~L~~n~e~t~~lp~n~~fd~~~~~~~r~l~~qIL~~HII~~~~~~~~~y~~-  450 (682)
T KOG1437|consen  373 LKNLMSLAREDEISTSMRLVAELGLL-TALAPNDEATLLLPTNNLFDDLTPLESRRLAEQILYNHIIPEYLTSSSMYNG-  450 (682)
T ss_pred             HHHHHHHHhcccccHHHHHHHhccce-EEEcCCCceEEeeehhhhccCCChhhhHHHHHHHHHHhCcchhhhhhhhhcc-
Confidence            55677777777788999999999966 4566667799999999999997652    25899999999999999998762 


Q ss_pred             CCCeeeccCCCceEEEeeCCC-CccccceEEEcc-EEEeCcccc-cCCceEEEEecCccCCCCCCcccccccccccCCCC
Q 041188          136 FGTKIESLSPGRCITITSSKS-ENDTVSKVFIGG-VEITHPDLF-NNGIIIIHGIQGYISPLSPLSCDVERMTSLSFPFQ  212 (409)
Q Consensus       136 ~g~~i~Tll~g~~L~Vt~~~~-~~~~~~~v~Vng-a~Vt~~Di~-~ng~~VIH~ID~VL~P~~~~~~~~~~~~sl~~p~~  212 (409)
                       ++.++|+ .+..+..-.... ...+...+.++| +.|...|+. .||  +||.||+|+.|-+.                
T Consensus       451 -~~~v~t~-g~~~l~~fv~r~~~s~~~t~i~~~~~~~Ii~aDi~~~nG--vvH~id~vl~p~~l----------------  510 (682)
T KOG1437|consen  451 -QTTVRTL-GKNKLLYFVYRHSVSANVTDILIGNEACIIEADISVKNG--VVHIIDRVLDPVSL----------------  510 (682)
T ss_pred             -cceeecc-CCeEEEEEEecccccccceeeeccceeeEEecccceecC--ceEEeeEEcCcccH----------------
Confidence             3467775 554454433322 112334566666 578888986 677  99999999999221                


Q ss_pred             CCCCCCcccccccchhHHHHHHHHHHHHHHh-cChhHHHHHHHHh-H-HHHhccCCcEEEecCccccccCC--------c
Q 041188          213 PSDRGHHHQQIQTQQPIMRLMLRDAMLRLRN-NGYSILSLAMKVK-Y-QELINLANMTVFALDDVSIFSGS--------Y  281 (409)
Q Consensus       213 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~L~~-~gfs~~a~lL~~~-l-~~l~~~~~~TVFAPtD~Af~~~~--------~  281 (409)
                                               ++.|+. ..++.+-.+++.. + +++...+++|+|+|||+|+....        .
T Consensus       511 -------------------------~~~l~~d~r~s~~~~~le~~~l~e~l~~~~~~t~fvPt~ka~~~~~~~~~~~~~~  565 (682)
T KOG1437|consen  511 -------------------------MEDLKTDGRISGTVQGLEGVLLPEELTPEGNYTLFVPTNKAWQKSTKDEKSLFHK  565 (682)
T ss_pred             -------------------------HHHHhhccchhhhHHhhhhcCChhhhccCCceEEEeecccccccCCcchhhcchH
Confidence                                     111111 1233333444432 3 44566688999999999996542        1


Q ss_pred             -cccccceeeeecCcc-cChhhhccCCCCcc---cccccCCceEEEEEcCCcccccceEEccEEEecCceeecCCeEEEE
Q 041188          282 -TYISNVRFHIIPNRY-LTIGDLERLPVGTT---LPTLARGQSLTVTTAGGASVTAPLRINYVRVKVPDVMKNLKIVVHG  356 (409)
Q Consensus       282 -~~l~iL~yHVVpg~~-L~~~dL~~l~~g~~---l~TLl~g~~L~vt~~~g~~~~~~l~VN~a~Vv~pDi~~~~~~VVHg  356 (409)
                       .+.+++.||++++.. ++..+.    ....   .-++ .+..+.+.....+     ..+|-.+++.+|++..+ +++|.
T Consensus       566 ~~l~~~l~yH~v~~~~~ls~~~~----~~v~~~~k~s~-~~~~~~~~~~~~~-----~~vn~e~~~~~~i~~~n-~~~h~  634 (682)
T KOG1437|consen  566 KALQDFLKYHLVPGQSRLSLGSS----PYVMIQVKLSL-RGDHLFFSLVNPR-----GDVNKERLVGIDIMGTN-GVVHV  634 (682)
T ss_pred             HHHHHHHHhccccceeeeecccc----cceeeeeeEEE-ecccEEeeeeccc-----cceeeeeeeccceeeec-ceeEE
Confidence             122789999999974 332211    1111   2222 3344545543334     67888999999998765 58999


Q ss_pred             ec-CcCCCC
Q 041188          357 IY-LPFPHL  364 (409)
Q Consensus       357 Id-~l~p~~  364 (409)
                      || ++-|+.
T Consensus       635 i~~vl~p~~  643 (682)
T KOG1437|consen  635 IDLVLKPPD  643 (682)
T ss_pred             EEEEcccCc
Confidence            99 444653

>smart00554 FAS1 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts

Probab=99.64  E-value=1.6e-16  Score=131.30  Aligned_cols=86  Identities=36%  Similarity=0.500  Sum_probs=70.6

Q ss_pred             EEEecCccccccCCc--------c-cc-ccceeeeecCcccChhhhccCCCCcccccccCCceEEEEEcC--Ccccccce
Q 041188          267 TVFALDDVSIFSGSY--------T-YI-SNVRFHIIPNRYLTIGDLERLPVGTTLPTLARGQSLTVTTAG--GASVTAPL  334 (409)
Q Consensus       267 TVFAPtD~Af~~~~~--------~-~l-~iL~yHVVpg~~L~~~dL~~l~~g~~l~TLl~g~~L~vt~~~--g~~~~~~l  334 (409)
                      |||||+|+||.....        + .+ ++|+|||+|++ ++.++|.   ++..++|+ .|..|.++..+  +.     +
T Consensus         1 TvfaP~d~Af~~~~~~~~~~l~~~~~l~~ll~~Hiv~~~-~~~~~l~---~~~~~~Tl-~g~~l~v~~~~~~~~-----i   70 (99)
T smart00554        1 TVFAPTDEAFQKLPPGTLNSLLADPKLKNLLLYHVVPGR-LSSADLL---NGGTLPTL-AGSKLRVTRSGDSGT-----V   70 (99)
T ss_pred             CEeCcCHHHHHhcCHHHHHHHhCCHHHHHHHHhcEeCce-EcHHHhc---cCCccccC-CCCEEEEEEeCCCCe-----E
Confidence            899999999976531        1 34 89999999998 5888885   47789998 57889998866  45     9


Q ss_pred             EEccEEEecCceeecCCeEEEEec-CcCCC
Q 041188          335 RINYVRVKVPDVMKNLKIVVHGIY-LPFPH  363 (409)
Q Consensus       335 ~VN~a~Vv~pDi~~~~~~VVHgId-~l~p~  363 (409)
                      ++|+++|+.+|+..++ |+||+|| .++|+
T Consensus        71 ~in~~~v~~~di~~~n-Gvih~Id~vL~P~   99 (99)
T smart00554       71 TVNGARIVEADIAATN-GVVHVIDRVLLPP   99 (99)
T ss_pred             EEcceEEEECCEecCC-eEEEEECceeCCC
Confidence            9999999999998765 7999999 55564

>PF02469 Fasciclin: Fasciclin domain; InterPro: IPR000782 The FAS1 (fasciclin-like) domain is an extracellular module of about 140 amino acid residues

Probab=99.56  E-value=4.2e-15  Score=127.60  Aligned_cols=107  Identities=31%  Similarity=0.358  Sum_probs=79.9

Q ss_pred             ChhHHHHHHHH-hH-HHH-hccCCcEEEecCccccccCC----------cccc-ccceeeeecCcccChhhhccCCCC-c
Q 041188          245 GYSILSLAMKV-KY-QEL-INLANMTVFALDDVSIFSGS----------YTYI-SNVRFHIIPNRYLTIGDLERLPVG-T  309 (409)
Q Consensus       245 gfs~~a~lL~~-~l-~~l-~~~~~~TVFAPtD~Af~~~~----------~~~l-~iL~yHVVpg~~L~~~dL~~l~~g-~  309 (409)
                      +|+.|..+++. .+ ..+ ...+.+|||||+|+||...+          .+.+ ++|+|||+++. ++.++|.   .+ .
T Consensus         2 ~~s~f~~~l~~~~l~~~l~~~~~~~TvfaP~d~a~~~~~~~~~~~~~~~~~~l~~~l~~hiv~~~-~~~~~l~---~~~~   77 (128)
T PF02469_consen    2 DLSTFSRLLEQAGLADLLNDSDGNYTVFAPTDDAFQKLSQETNSSLADSKEQLKSLLKYHIVPGS-ITSSDLR---NGKQ   77 (128)
T ss_dssp             TTHHHHHHHHHTTCHHHHGCSSSSEEEEEE-HHHHHHSHHHHHHHHHTHHHHHHHHHHHTEEES----HCHHH---CHHE
T ss_pred             CHHHHHHHHHHcCCHHHHhcCCCCEEEEEECHHHHHhccccccchhhhhhhhHhhhhhhEEEcCc-eehhhhc---cccc
Confidence            46778888874 34 556 56689999999999996541          2334 89999999998 5888885   45 6


Q ss_pred             ccccccCCceEEEEEc--CCcccccceEEcc-EEEecCceeecCCeEEEEecCcC
Q 041188          310 TLPTLARGQSLTVTTA--GGASVTAPLRINY-VRVKVPDVMKNLKIVVHGIYLPF  361 (409)
Q Consensus       310 ~l~TLl~g~~L~vt~~--~g~~~~~~l~VN~-a~Vv~pDi~~~~~~VVHgId~l~  361 (409)
                      .++|++.|+.+.|+..  ++.     ++||+ ++|+.+|+.+++ |+||.||.+|
T Consensus        78 ~~~t~~~g~~~~v~~~~~~~~-----~~v~~~a~i~~~~~~~~n-G~ih~id~vL  126 (128)
T PF02469_consen   78 TLETLLNGQPLRVSSSPSNGT-----IYVNGKARIVKSDIEASN-GVIHIIDDVL  126 (128)
T ss_dssp             EEEBSSTTCEEEEEEEGGTTE-----EEECCEEEESEEEEEESS-EEEEEESS-T
T ss_pred             cceeccCCCEEEEEEEecCCc-----eEecCceEEEeCCEEeCC-EEEEEECceE
Confidence            7899558888999876  455     99999 999999997765 7899999554

It has been suggested that the FAS1 domain represents an ancient cell adhesion domain common to plants and animals []; related FAS1 domains are also found in bacteria []. The crystal structure of FAS1 domains 3 and 4 of fasciclin I from Drosophila melanogaster (Fruit fly) has been determined, revealing a novel domain fold consisting of a seven-stranded beta wedge and at least five alpha helices; two well-ordered N-acetylglucosamine groups attached to a conserved asparagine are located in the interface region between the two FAS1 domains []. Fasciclin I is an insect neural cell adhesion molecule involved in axonal guidance that is attached to the membrane by a GPI-anchored protein. FAS1 domains are present in many secreted and membrane-anchored proteins. These proteins are usually GPI anchored and consist of: (i) a single FAS1 domain, (ii) a tandem array of FAS1 domains, or (iii) FAS1 domain(s) interspersed with other domains. Proteins known to contain a FAS1 domain include: Fasciclin I (4 FAS1 domains). Human TGF-beta induced Ig-H3 (BIgH3) protein (4 FAS1 domains), where the FAS1 domains mediate cell adhesion through an interaction with alpha3/beta1 integrin; mutation in the FAS1 domains result in corneal dystrophy []. Volvox major cell adhesion protein (2 FAS1 domains) []. Arabidopsis fasciclin-like arabinogalactan proteins (2 FAS1 domains) []. Mammalian stabilin protein, a family of fasciclin-like hyaluronan receptor homologues (7 FAS1 domains)[]. Human extracellular matrix protein periostin (4 FAS1 domains). Bacterial immunogenic protein MPT70 (1 FAS1 domain) []. The FAS1 domains of both human periostin (Q15063 from SWISSPROT) and BIgH3 (Q15582 from SWISSPROT) proteins were found to contain vitamin K-dependent gamma-carboxyglutamate residues []. Gamma-carboxyglutamate residues are more commonly associated with GLA domains (IPR000294 from INTERPRO), where they occur through post-translational modification catalysed by the vitamin K-dependent enzyme gamma-glutamylcarboxylase.; PDB: 1O70_A 1W7D_A 1W7E_A 1NYO_A 1X3B_A 2VXP_A.

>KOG1437 consensus Fasciclin and related adhesion glycoproteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=99.38  E-value=1.1e-12  Score=141.03  Aligned_cols=226  Identities=19%  Similarity=0.157  Sum_probs=143.9

Q ss_pred             cCCCCeEEEeeCChhhhcCCCCChhHHhhhcccCCccchHHHhcccCCCeeeccCCCceEEEeeCCC-C-cc-ccceEEE
Q 041188           90 SWSGPSTLFAPSDSSLHTCFSCSVPSLLREHLVPGLFTIDYLRKLAFGTKIESLSPGRCITITSSKS-E-ND-TVSKVFI  166 (409)
Q Consensus        90 ~~~g~~TIFAPtD~AF~~l~~~~L~~LL~yHVvpg~~~~~~L~~l~~g~~i~Tll~g~~L~Vt~~~~-~-~~-~~~~v~V  166 (409)
                      ...++.|++||+|+||.+.+....+.++.||.+.|.+...+..+.   ....+...+...+.+.... . .. .+....+
T Consensus       268 ~~~d~rt~~a~tn~a~~~ip~~~~~~~~~~~~v~~~~~~~~i~~~---~~~~~s~~~~~~r~~~~~~~~a~g~~g~~~~~  344 (682)
T KOG1437|consen  268 PFVDPRTHLAPTNEAFFTIPRGYPPRILGYHLVLGNLKYNHILDN---MKLGPSLAPGTVRLTGEGVAIAPGSSGERYHI  344 (682)
T ss_pred             cccccccccccCcchhhcccccCCCcccccccchhhhhhhhhccc---ccccccccccceeeccccccccccCCCceEEe
Confidence            445789999999999999988777888999999988877766542   1111111221122221110 0 00 1246778


Q ss_pred             ccEEEeCcccccCCceEEEEecCccCCCCCCcccccccccccCCCCCCCCCCcccccccchhHHHHHHHHHHHHHHhcCh
Q 041188          167 GGVEITHPDLFNNGIIIIHGIQGYISPLSPLSCDVERMTSLSFPFQPSDRGHHHQQIQTQQPIMRLMLRDAMLRLRNNGY  246 (409)
Q Consensus       167 nga~Vt~~Di~~ng~~VIH~ID~VL~P~~~~~~~~~~~~sl~~p~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~L~~~gf  246 (409)
                      ||..++..|...++ ++||.||.+|.|++.                                      ++.++..++..-
T Consensus       345 ng~~~I~kd~i~~~-~~lh~id~~l~p~~~--------------------------------------~~l~~La~e~~~  385 (682)
T KOG1437|consen  345 NGRAIIQKDFIHTN-GLLHYIDYVLEPDSL--------------------------------------KNLMSLAREDEI  385 (682)
T ss_pred             ecceeEEEeeeccc-eEEEEcccccCCchH--------------------------------------HHHHHHHhcccc
Confidence            88666546776542 499999999999631                                      123444555444


Q ss_pred             hHHHHHHHH-hH-HHHhccCCcEEEecCccccccCCc----ccc-ccceeeeecCcccChhhhccCCCCc-ccccccCCc
Q 041188          247 SILSLAMKV-KY-QELINLANMTVFALDDVSIFSGSY----TYI-SNVRFHIIPNRYLTIGDLERLPVGT-TLPTLARGQ  318 (409)
Q Consensus       247 s~~a~lL~~-~l-~~l~~~~~~TVFAPtD~Af~~~~~----~~l-~iL~yHVVpg~~L~~~dL~~l~~g~-~l~TLl~g~  318 (409)
                      +++..++.. .+ .-|.....+|+|+|+|+||..+..    ..+ .+|+|||||.+ +..++..   +|. .++|+ ++.
T Consensus       386 st~~rlv~elgll~~L~~n~e~t~~lp~n~~fd~~~~~~~r~l~~qIL~~HII~~~-~~~~~~y---~~~~~v~t~-g~~  460 (682)
T KOG1437|consen  386 STSMRLVAELGLLTALAPNDEATLLLPTNNLFDDLTPLESRRLAEQILYNHIIPEY-LTSSSMY---NGQTTVRTL-GKN  460 (682)
T ss_pred             cHHHHHHHhccceEEEcCCCceEEeeehhhhccCCChhhhHHHHHHHHHHhCcchh-hhhhhhh---cccceeecc-CCe
Confidence            555555432 12 224433449999999999987642    223 78999999999 5777775   344 77887 565


Q ss_pred             eEEEEE--cCCcccccceEEcc-EEEecCceeecCCeEEEEecCcCCC
Q 041188          319 SLTVTT--AGGASVTAPLRINY-VRVKVPDVMKNLKIVVHGIYLPFPH  363 (409)
Q Consensus       319 ~L~vt~--~~g~~~~~~l~VN~-a~Vv~pDi~~~~~~VVHgId~l~p~  363 (409)
                      .+..-.  +.+..-...+.+++ +.|...|+...+ |+||.||.++++
T Consensus       461 ~l~~fv~r~~~s~~~t~i~~~~~~~Ii~aDi~~~n-GvvH~id~vl~p  507 (682)
T KOG1437|consen  461 KLLYFVYRHSVSANVTDILIGNEACIIEADISVKN-GVVHIIDRVLDP  507 (682)
T ss_pred             EEEEEEecccccccceeeeccceeeEEecccceec-CceEEeeEEcCc
Confidence            444322  22221124456666 688899998766 589999987766

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	409
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 2e-06
 Identities = 45/323 (13%), Positives = 98/323 (30%), Gaps = 88/323 (27%)

Query: 18  LLIITKSAALTDVETLFTTTPPPQQTPPPPSDLNDQSSFFSHTAMLAPILSHLGFNELAT 77
           +L+ T+   +TD  +  TTT            L+  S   +   + + +L       L  
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHIS---------LDHHSMTLTPDEVKS-LLL----KYLDC 313

Query: 78  AAPSLSNDAVATSWSGPSTLFAPSDSSLHTCFSCSVPSLLREHLVPGLFTIDYLRKL--- 134
               L  + + T+   P  L      S+       +   +R+ L     T D  + +   
Sbjct: 314 RPQDLPREVLTTN---PRRL------SI-------IAESIRDGLA----TWDNWKHVNCD 353

Query: 135 ----AFGTKIESLSPGRCITITSSKSENDTVSKVFIGGVEITHPDL--------FNNGII 182
                  + +  L P         +   D +S VF     I    L         ++ ++
Sbjct: 354 KLTTIIESSLNVLEP------AEYRKMFDRLS-VFPPSAHIPTILLSLIWFDVIKSDVMV 406

Query: 183 IIHGIQGYISPLSPLSCDVERMTS------LSFPFQPSDRGHHHQQIQTQQPIMRLMLRD 236
           +++ +  Y    S +    +  T       L    +  +    H+ I     I +    D
Sbjct: 407 VVNKLHKY----SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462

Query: 237 AMLRLRNNGYSILSLAMKVKYQEL---INLANMTVFALDDVSIFSGSYTYISNVRFHIIP 293
            ++    + Y          Y  +   +          + +++F   +    + RF  + 
Sbjct: 463 DLIPPYLDQYF---------YSHIGHHLKNIEHP----ERMTLFRMVFL---DFRF--LE 504

Query: 294 NRYLTIGDLERLPVGTTLPTLAR 316
            + +          G+ L TL +
Sbjct: 505 QK-IRHDSTAWNASGSILNTLQQ 526

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 5e-04
 Identities = 45/262 (17%), Positives = 80/262 (30%), Gaps = 75/262 (28%)

Query: 109 FSCS-VPSLLREHLVPGLFT---IDYLRKLAFGTKIESLSPGRCITITSSKSENDTVSKV 164
           F C  V  + +      + +   ID++  +     +      R      SK E   + + 
Sbjct: 33  FDCKDVQDMPK-----SILSKEEIDHI--IMSKDAVSGTL--RLFWTLLSKQEE--MVQK 81

Query: 165 FIGGV-EITHPDLFNNGIIIIHGIQ------GYISPLSPLSCDVERMTSLSFPFQPSDRG 217
           F+  V  I +  L +   I     Q       YI     L  D +     +       R 
Sbjct: 82  FVEEVLRINYKFLMSP--IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS-----RL 134

Query: 218 HHHQQIQTQQPIMRLMLRDAMLRLRNNGYSILSLAM----KVKYQELINLANMTVFALDD 273
             + +           LR A+L LR     ++   +    K            T  ALD 
Sbjct: 135 QPYLK-----------LRQALLELRPAKNVLID-GVLGSGK------------TWVALDV 170

Query: 274 VSIFSGSYTYISNVRFHIIPNRYLTIGDLERLPVGTTLPTLARGQSL------TVTTAGG 327
                 SY     + F I    +L + +       +    L   Q L        T+   
Sbjct: 171 CL----SYKVQCKMDFKIF---WLNLKN-----CNSPETVLEMLQKLLYQIDPNWTSRSD 218

Query: 328 ASVTAPLRINYVRVKVPDVMKN 349
            S    LRI+ ++ ++  ++K+
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKS 240

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	409
1o70_A	324	Fasciclin I, FAS I, FCN; cell adhesion, AXON guida	100.0
1w7d_A	137	Fasciclin-like protein; cell adhesion; NMR {Rhodob	99.87
2vxp_A	132	Transforming growth factor-beta-induced protein IG	99.85
1nyo_A	163	Immunogenic protein MPT70; seven-stranded beta-bar	99.84
2vxp_A	132	Transforming growth factor-beta-induced protein IG	99.78
1w7d_A	137	Fasciclin-like protein; cell adhesion; NMR {Rhodob	99.76
1nyo_A	163	Immunogenic protein MPT70; seven-stranded beta-bar	99.74
1o70_A	324	Fasciclin I, FAS I, FCN; cell adhesion, AXON guida	99.69

>1o70_A Fasciclin I, FAS I, FCN; cell adhesion, AXON guidance, extracellular module, genetic disorder, corneal dystrophy; HET: NAG; 2.6A {Drosophila melanogaster} SCOP: b.118.1.1 b.118.1.1

Probab=100.00  E-value=1.2e-35  Score=293.73  Aligned_cols=254  Identities=16%  Similarity=0.173  Sum_probs=175.9

Q ss_pred             hHHHHHH-------hcCcHHHHHHhhccC--cccccccCCCCeEEEeeCChhhhcCCC-------CChhHHhhhcccCCc
Q 041188           62 MLAPILS-------HLGFNELATAAPSLS--NDAVATSWSGPSTLFAPSDSSLHTCFS-------CSVPSLLREHLVPGL  125 (409)
Q Consensus        62 ~l~~~L~-------~~Gft~la~lL~~~~--~~~~~l~~~g~~TIFAPtD~AF~~l~~-------~~L~~LL~yHVvpg~  125 (409)
                      ++.++|+       ...|++|+.+|+.++  +. +.+.+.+++|||||+|+||.+...       ..++++|+|||++|+
T Consensus         7 ~i~~~L~~~~~~~~~~~~s~~~~~l~~ag~~l~-~~L~~~~~~TvFAPtn~Af~~~~~~~l~~~~~~l~~iL~yHvv~g~   85 (324)
T 1o70_A            7 TVTQFLQSFKENAENGALRKFYEVIMDNGGAVL-DDINSLTEVTILAPSNEAWNSSNINNVLRDRNKMRQILNMHIIKDR   85 (324)
T ss_dssp             ------------CCHHHHHHHHHHHHHTCSHHH-HHHHTCSSEEEEEECHHHHHHTCTHHHHTCHHHHHHHHHHTEESSC
T ss_pred             hHHHHHHHHHhhhcCCcHHHHHHHHHHHhHHHH-HHHcCCCCeEEEEEChHhhhcccHhhhhCCHHHHHHHHHhcEeCCe
Confidence            5677777       334999999999987  44 445667999999999999987532       357899999999999


Q ss_pred             cchHHHhcccCC--CeeeccCCCceEEEeeCCCCccccceEEEcc----EEEeCcccc-cCCceEEEEecCccCCCCCCc
Q 041188          126 FTIDYLRKLAFG--TKIESLSPGRCITITSSKSENDTVSKVFIGG----VEITHPDLF-NNGIIIIHGIQGYISPLSPLS  198 (409)
Q Consensus       126 ~~~~~L~~l~~g--~~i~Tll~g~~L~Vt~~~~~~~~~~~v~Vng----a~Vt~~Di~-~ng~~VIH~ID~VL~P~~~~~  198 (409)
                      ++.++|.+...+  ..++|+..+..+.++..+.  ..++.+++||    ++|+.+|+. .||  |||+||+||.|+..  
T Consensus        86 ~~~~~l~~~~~~~~~~~~Tl~g~~~l~~~v~~~--~~~~~v~v~~g~~~a~v~~~di~~~NG--vIhvID~VL~pp~~--  159 (324)
T 1o70_A           86 LNVDKIRQKNANLIAQVPTVNNNTFLYFNVRGE--GSDTVITVEGGGVNATVIQADVAQTNG--YVHIIDHVLGVPYT--  159 (324)
T ss_dssp             CCHHHHHHHTSSSCCCEEBSSTTCEEEEEEESC--GGGCEEEEEETTEEEEEEEEEEECSSE--EEEEESSCTTSCCS--
T ss_pred             ecHHHHhhccCCCceEEEcCCCCceEEEEEeec--CCceEEEEcCCceeEEEEeccccccCc--EEEEEchhhhhchh--
Confidence            999999875321  1678875443355543321  0134688885    899999986 455  99999999999632  


Q ss_pred             ccccccccccCCCCCCCCCCcccccccchhHHHHHHHHHHHHHHh-cChhHHHHHHHH-hH-HHHh-ccCCcEEEecCcc
Q 041188          199 CDVERMTSLSFPFQPSDRGHHHQQIQTQQPIMRLMLRDAMLRLRN-NGYSILSLAMKV-KY-QELI-NLANMTVFALDDV  274 (409)
Q Consensus       199 ~~~~~~~sl~~p~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~L~~-~gfs~~a~lL~~-~l-~~l~-~~~~~TVFAPtD~  274 (409)
                                                           ++.+.++. ..|+.|..+++. .+ +.+. ..+++|||||+|+
T Consensus       160 -------------------------------------ti~~~l~~~~~fs~~~~~l~~~gl~~~L~~~~~~~TvFAPtd~  202 (324)
T 1o70_A          160 -------------------------------------TVLGKLESDPMMSDTYKMGKFSHFNDQLNNTQRRFTYFVPRDK  202 (324)
T ss_dssp             -------------------------------------CHHHHHHHCGGGHHHHHHTTTTTTTGGGGCSSSEEEEEEECHH
T ss_pred             -------------------------------------hHHHHhhcCchHHHHHHHHHhhCHHHHhCCCCCCeEEEEeChH
Confidence                                                 02333443 457888777764 34 3455 3578999999999


Q ss_pred             ccccCC------------c---ccc-ccceeeeecC-cccChhhhccCCC-C--cccccccCCceEEEEE--cCCccccc
Q 041188          275 SIFSGS------------Y---TYI-SNVRFHIIPN-RYLTIGDLERLPV-G--TTLPTLARGQSLTVTT--AGGASVTA  332 (409)
Q Consensus       275 Af~~~~------------~---~~l-~iL~yHVVpg-~~L~~~dL~~l~~-g--~~l~TLl~g~~L~vt~--~~g~~~~~  332 (409)
                      ||....            .   +.+ ++|+|||||+ ++++.++|..... +  ..++|+.  ..+.|+.  .+|.    
T Consensus       203 Af~~l~~~~~~~~~~~l~~~~~~~l~~iL~yHvv~~~~~~~~~~l~~~~~~~~~~~~~Tl~--~~l~v~~~~~~~~----  276 (324)
T 1o70_A          203 GWQKTELDYPSAHKKLFMADFSYHSKSILERHLAISDKEYTMKDLVKFSQESGSVILPTFR--DSLSIRVEEEAGR----  276 (324)
T ss_dssp             HHHHHHHHCHHHHHHHTSGGGHHHHHHHHHTTEEEESSCCCHHHHHHHHHHSSSEEEECSS--SEEEEEEEEETTE----
T ss_pred             HHHhhhhhchhHHHHHhccCcHHHHHHHHHhcEeCCcceEcHHHHhhhccCCCeeeeeccC--CcEEEEEEecCCE----
Confidence            996431            1   245 8999999998 2357788864211 1  1488985  5677765  4666    


Q ss_pred             ceEEc----cEEEecCceeecCCeEEEEec-CcCCCCCCC
Q 041188          333 PLRIN----YVRVKVPDVMKNLKIVVHGIY-LPFPHLHPA  367 (409)
Q Consensus       333 ~l~VN----~a~Vv~pDi~~~~~~VVHgId-~l~p~~~~~  367 (409)
                       ++||    +++|+.+|+.+.| ||||.|| +++|+....
T Consensus       277 -v~v~~~~~~a~v~~~di~~~N-GvIHvID~VL~P~~~~~  314 (324)
T 1o70_A          277 -YVIIWNYKKINVYRPDVECTN-GIIHVIDYPLLEEKDVV  314 (324)
T ss_dssp             -EEEEETTEEEEEEEEEEEETT-EEEEEESSCSCCTTTTC
T ss_pred             -EEEEecCceeEEEEcccccCC-CeEEEeceeecCCcccc
Confidence             8888    7999999998866 6899999 666765433

>1w7d_A Fasciclin-like protein; cell adhesion; NMR {Rhodobacter sphaeroides} PDB: 1w7e_A

Probab=99.87  E-value=1.3e-23  Score=183.81  Aligned_cols=119  Identities=29%  Similarity=0.430  Sum_probs=98.7

Q ss_pred             hHHHHHHhc-CcHHHHHHhhccCcccccccCCCCeEEEeeCChhhhcCCCC------------ChhHHhhhcccCCccch
Q 041188           62 MLAPILSHL-GFNELATAAPSLSNDAVATSWSGPSTLFAPSDSSLHTCFSC------------SVPSLLREHLVPGLFTI  128 (409)
Q Consensus        62 ~l~~~L~~~-Gft~la~lL~~~~~~~~~l~~~g~~TIFAPtD~AF~~l~~~------------~L~~LL~yHVvpg~~~~  128 (409)
                      ++.++|++. .|++|+.+|+++++. +.+.+.+++|||||+|+||++++..            .++++|+|||+||++..
T Consensus         4 ~i~~~l~~~~~~s~f~~~l~~agl~-~~L~~~~~~TvFAPtn~Af~~l~~~~~~~l~~~~~~~~l~~lL~yHvv~~~~~~   82 (137)
T 1w7d_A            4 DIVETATGAGSFTTLLTAAEAAGLV-DTLKGDGPFTVFAPTDAAFAALPEGTVEDLLKPENKEKLTEILTYHVVPGEVMS   82 (137)
T ss_dssp             TTGGGGGSCSSSTTTTHHHHHTTTH-HHHTSSSCEEEECCCHHHHTTSTTTHHHHTTSHHHHHHHHHHHHHHEEESCCCT
T ss_pred             CHHHHHHhCCCHHHHHHHHHHcCCH-HHHcCCCCEEEEEECHHHHHHcCHhHHHHHhCcCCHHHHHHHHHhhEeCcEEcH
Confidence            456667654 499999999999844 5566679999999999999998642            36789999999999999


Q ss_pred             HHHhcccCCCeeeccCCCceEEEeeCCCCccccceEEEccEEEeCcccc-cCCceEEEEecCccCCC
Q 041188          129 DYLRKLAFGTKIESLSPGRCITITSSKSENDTVSKVFIGGVEITHPDLF-NNGIIIIHGIQGYISPL  194 (409)
Q Consensus       129 ~~L~~l~~g~~i~Tll~g~~L~Vt~~~~~~~~~~~v~Vnga~Vt~~Di~-~ng~~VIH~ID~VL~P~  194 (409)
                      ++|.+   +..++|+ .|..+.|+..+      + ++|||++|+.+|+. .||  |||+||+||.|+
T Consensus        83 ~~l~~---~~~~~tl-~G~~l~v~~~~------g-v~vn~a~v~~~di~~~NG--vIHvID~VL~P~  136 (137)
T 1w7d_A           83 SDLTE---GMTAETV-EGGALTVTLEG------G-PKVNGVSISQPDVDASNG--VIHVIDGVLMPG  136 (137)
T ss_dssp             TTSCS---SEEEECT-TSCEEEEECTT------S-CEETTEECSBCCCBCSSS--EEEBCSSCCSSC
T ss_pred             HHhcC---CCeeecc-CCceEEEEecC------C-EEEeCcEEEECCeecCCe--EEEEECeeeCCC
Confidence            99975   5567775 68889998764      5 99999999999996 566  999999999997

>2vxp_A Transforming growth factor-beta-induced protein IG-H3; RGD-containing collagen-associated protein, FAS1, BIGH3, vision, amyloid, RGD-CAP, secreted; 2.5A {Homo sapiens} PDB: 1x3b_A

Probab=99.85  E-value=3.7e-22  Score=173.56  Aligned_cols=118  Identities=19%  Similarity=0.321  Sum_probs=98.2

Q ss_pred             hHHHHHHhcC-cHHHHHHhhccCcccccccCCCCeEEEeeCChhhhcCCC----------CChhHHhhhcccCCccchHH
Q 041188           62 MLAPILSHLG-FNELATAAPSLSNDAVATSWSGPSTLFAPSDSSLHTCFS----------CSVPSLLREHLVPGLFTIDY  130 (409)
Q Consensus        62 ~l~~~L~~~G-ft~la~lL~~~~~~~~~l~~~g~~TIFAPtD~AF~~l~~----------~~L~~LL~yHVvpg~~~~~~  130 (409)
                      ++.++|++.+ |++|+.+++++++. +.+.+.+++|||||+|+||++++.          ..++++|+|||+|+.+..++
T Consensus         3 ti~~~l~~~~~fs~~~~~l~~agl~-~~L~~~~~~TvFAPtn~Af~~l~~~~~~~l~~~~~~l~~iL~yHvv~~~~~~~~   81 (132)
T 2vxp_A            3 TVMDVLKGDNRFSMLVAAIQSAGLT-ETLNREGVYTVFAPTNEAFRALPPRERSRLLGDAKELANILKYHIGDEILVSGG   81 (132)
T ss_dssp             CHHHHHTTSTTCHHHHHHHHHHTCH-HHHHSSCCEEEEEECHHHHHHSCHHHHHHHHTCHHHHHHHHHHSBBSSCCCSTT
T ss_pred             cHHHHHHcCCCHHHHHHHHHHcCcH-HHHcCCCCEEEEeECHHHHHhhCHHHHHHHhcCHHHHHHHHHhcCcCceeehhh
Confidence            5778888754 99999999999955 556678999999999999999863          24789999999999998888


Q ss_pred             HhcccCCCeeeccCCCceEEEeeCCCCccccceEEEccEEEeCcccc-cCCceEEEEecCccC
Q 041188          131 LRKLAFGTKIESLSPGRCITITSSKSENDTVSKVFIGGVEITHPDLF-NNGIIIIHGIQGYIS  192 (409)
Q Consensus       131 L~~l~~g~~i~Tll~g~~L~Vt~~~~~~~~~~~v~Vnga~Vt~~Di~-~ng~~VIH~ID~VL~  192 (409)
                      |..   +..++|+ .|..+.|+..+      +.++||+++|+.+|+. .||  |||+||+||.
T Consensus        82 l~~---~~~~~tl-~G~~l~v~~~~------~~v~vn~a~v~~~di~a~NG--vIHvID~VLl  132 (132)
T 2vxp_A           82 IGA---LVRLKSL-QGDKLEVSLKN------NVVSVNKEPVAEPDIMATNG--VVHVITNVLQ  132 (132)
T ss_dssp             CSS---CEEEEBT-TSSEEEEEEET------TEEEESSCBEEEEEEEETTE--EEEEESSCC-
T ss_pred             ccC---CceEecC-CCCEEEEEEeC------CEEEEeccEEEEcceecCCE--EEEEECcEeC
Confidence            864   5577886 68889998765      5799999999999996 455  9999999984

>1nyo_A Immunogenic protein MPT70; seven-stranded beta-barrel, fasciclin domain, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.118.1.1

Probab=99.84  E-value=1.3e-21  Score=176.54  Aligned_cols=120  Identities=18%  Similarity=0.228  Sum_probs=100.4

Q ss_pred             hhhHHHHHHhcC-cHHHHHHhh-----ccCcccccccCCCCeEEEeeCChhhhcCCC----------CChhHHhhhcccC
Q 041188           60 TAMLAPILSHLG-FNELATAAP-----SLSNDAVATSWSGPSTLFAPSDSSLHTCFS----------CSVPSLLREHLVP  123 (409)
Q Consensus        60 ~~~l~~~L~~~G-ft~la~lL~-----~~~~~~~~l~~~g~~TIFAPtD~AF~~l~~----------~~L~~LL~yHVvp  123 (409)
                      ..++.++|++.+ |++|+.+|+     .+++. +.+...+ +|||||+|+||++++.          ..|+++|+|||++
T Consensus        27 ~~~i~~~l~~~~~~s~f~~~l~~~~~~~agl~-~~L~~~g-~TvFAPtn~AF~~l~~~~~~~L~~~~~~L~~iL~yHvv~  104 (163)
T 1nyo_A           27 QDPVAVAASNNPELTTLTAALSGQLNPQVNLV-DTLNSGQ-YTVFAPTNAAFSKLPASTIDELKTNSSLLTSILTYHVVA  104 (163)
T ss_dssp             HSCHHHHHTTSTTTHHHHHHHHSSSCTTCCCH-HHHTSSS-EEECCBCHHHHHHSCHHHHHHHTTCSSHHHHHHHHTEEE
T ss_pred             CcCHHHHHHhCCCHHHHHHHHHhccccccCHH-HHhCCCC-cEEEEECHHHHHhccHHHHHHHhcCHHHHHHHHHhceEC
Confidence            456888888765 999999999     88854 4566667 9999999999998852          4578999999999


Q ss_pred             CccchHHHhcccCCCeeeccCCCceEEEeeCCCCccccceEEEccEEEeCcccccCCceEEEEecCccCCC
Q 041188          124 GLFTIDYLRKLAFGTKIESLSPGRCITITSSKSENDTVSKVFIGGVEITHPDLFNNGIIIIHGIQGYISPL  194 (409)
Q Consensus       124 g~~~~~~L~~l~~g~~i~Tll~g~~L~Vt~~~~~~~~~~~v~Vnga~Vt~~Di~~ng~~VIH~ID~VL~P~  194 (409)
                      +++..++|.    | .++|+ .|+.|+|+..+      +.++||+++|+.+|+.. .++|||+||+||.|+
T Consensus       105 g~~~~~~l~----g-~~~Tl-~G~~l~v~~~~------~~v~vn~a~V~~~di~a-~NGvIHvID~VL~P~  162 (163)
T 1nyo_A          105 GQTSPANVV----G-TRQTL-QGASVTVTGQG------NSLKVGNADVVCGGVST-ANATVYMIDSVLMPP  162 (163)
T ss_dssp             SCCCTTTSC----E-EEECT-TSSEEEEEECS------SCEEETTEECSSBCCCC-SSEEEBCBSSCCCCC
T ss_pred             CEEcHHHhC----C-ccccC-CCCEEEEEEEC------CEEEEeccEEEECceEc-CCEEEEEECcEeCCC
Confidence            999999996    2 67886 68889998765      57999999999999963 334999999999996

>2vxp_A Transforming growth factor-beta-induced protein IG-H3; RGD-containing collagen-associated protein, FAS1, BIGH3, vision, amyloid, RGD-CAP, secreted; 2.5A {Homo sapiens} PDB: 1x3b_A

Probab=99.78  E-value=1.5e-19  Score=156.99  Aligned_cols=114  Identities=25%  Similarity=0.289  Sum_probs=91.2

Q ss_pred             HHHHHHh-cChhHHHHHHHH-hH-HHHhccCCcEEEecCccccccCC----------cccc-ccceeeeecCcccChhhh
Q 041188          237 AMLRLRN-NGYSILSLAMKV-KY-QELINLANMTVFALDDVSIFSGS----------YTYI-SNVRFHIIPNRYLTIGDL  302 (409)
Q Consensus       237 ~~~~L~~-~gfs~~a~lL~~-~l-~~l~~~~~~TVFAPtD~Af~~~~----------~~~l-~iL~yHVVpg~~L~~~dL  302 (409)
                      +++.|+. ..|+.|..+++. .+ +.+...++||||||+|+||..+.          .+.+ ++|+|||+|+. ++.+++
T Consensus         4 i~~~l~~~~~fs~~~~~l~~agl~~~L~~~~~~TvFAPtn~Af~~l~~~~~~~l~~~~~~l~~iL~yHvv~~~-~~~~~l   82 (132)
T 2vxp_A            4 VMDVLKGDNRFSMLVAAIQSAGLTETLNREGVYTVFAPTNEAFRALPPRERSRLLGDAKELANILKYHIGDEI-LVSGGI   82 (132)
T ss_dssp             HHHHHTTSTTCHHHHHHHHHHTCHHHHHSSCCEEEEEECHHHHHHSCHHHHHHHHTCHHHHHHHHHHSBBSSC-CCSTTC
T ss_pred             HHHHHHcCCCHHHHHHHHHHcCcHHHHcCCCCEEEEeECHHHHHhhCHHHHHHHhcCHHHHHHHHHhcCcCce-eehhhc
Confidence            5666665 569999999975 35 55777789999999999996652          2344 78999999998 466665


Q ss_pred             ccCCCCcccccccCCceEEEEEcCCcccccceEEccEEEecCceeecCCeEEEEecCcC
Q 041188          303 ERLPVGTTLPTLARGQSLTVTTAGGASVTAPLRINYVRVKVPDVMKNLKIVVHGIYLPF  361 (409)
Q Consensus       303 ~~l~~g~~l~TLl~g~~L~vt~~~g~~~~~~l~VN~a~Vv~pDi~~~~~~VVHgId~l~  361 (409)
                         ..+..++|+ .|+.|.|+..+|.     ++||+++|+.+|+..+| ||||+||.++
T Consensus        83 ---~~~~~~~tl-~G~~l~v~~~~~~-----v~vn~a~v~~~di~a~N-GvIHvID~VL  131 (132)
T 2vxp_A           83 ---GALVRLKSL-QGDKLEVSLKNNV-----VSVNKEPVAEPDIMATN-GVVHVITNVL  131 (132)
T ss_dssp             ---SSCEEEEBT-TSSEEEEEEETTE-----EEESSCBEEEEEEEETT-EEEEEESSCC
T ss_pred             ---cCCceEecC-CCCEEEEEEeCCE-----EEEeccEEEEcceecCC-EEEEEECcEe
Confidence               456788998 6788999988777     99999999999998765 6899999664

>1w7d_A Fasciclin-like protein; cell adhesion; NMR {Rhodobacter sphaeroides} PDB: 1w7e_A

Probab=99.76  E-value=8.2e-20  Score=159.65  Aligned_cols=114  Identities=26%  Similarity=0.349  Sum_probs=87.9

Q ss_pred             HHHHH-hcChhHHHHHHHH-hH-HHHhccCCcEEEecCccccccCC------------cccc-ccceeeeecCcccChhh
Q 041188          238 MLRLR-NNGYSILSLAMKV-KY-QELINLANMTVFALDDVSIFSGS------------YTYI-SNVRFHIIPNRYLTIGD  301 (409)
Q Consensus       238 ~~~L~-~~gfs~~a~lL~~-~l-~~l~~~~~~TVFAPtD~Af~~~~------------~~~l-~iL~yHVVpg~~L~~~d  301 (409)
                      ++.|+ ..+|+.|..+++. .+ +.+...+++|||||+|+||....            .+.+ ++|+|||+|++ ++.++
T Consensus         6 ~~~l~~~~~~s~f~~~l~~agl~~~L~~~~~~TvFAPtn~Af~~l~~~~~~~l~~~~~~~~l~~lL~yHvv~~~-~~~~~   84 (137)
T 1w7d_A            6 VETATGAGSFTTLLTAAEAAGLVDTLKGDGPFTVFAPTDAAFAALPEGTVEDLLKPENKEKLTEILTYHVVPGE-VMSSD   84 (137)
T ss_dssp             GGGGGSCSSSTTTTHHHHHTTTHHHHTSSSCEEEECCCHHHHTTSTTTHHHHTTSHHHHHHHHHHHHHHEEESC-CCTTT
T ss_pred             HHHHHhCCCHHHHHHHHHHcCCHHHHcCCCCEEEEEECHHHHHHcCHhHHHHHhCcCCHHHHHHHHHhhEeCcE-EcHHH
Confidence            34444 3468888888875 35 55777789999999999997652            2334 78999999999 57777


Q ss_pred             hccCCCCcccccccCCceEEEEEcCCcccccceEEccEEEecCceeecCCeEEEEec-CcCCC
Q 041188          302 LERLPVGTTLPTLARGQSLTVTTAGGASVTAPLRINYVRVKVPDVMKNLKIVVHGIY-LPFPH  363 (409)
Q Consensus       302 L~~l~~g~~l~TLl~g~~L~vt~~~g~~~~~~l~VN~a~Vv~pDi~~~~~~VVHgId-~l~p~  363 (409)
                      |.   .|..++|+ .|+.|.|+..+ +     ++||+++|+.+|+..+| ||||+|| +++|+
T Consensus        85 l~---~~~~~~tl-~G~~l~v~~~~-g-----v~vn~a~v~~~di~~~N-GvIHvID~VL~P~  136 (137)
T 1w7d_A           85 LT---EGMTAETV-EGGALTVTLEG-G-----PKVNGVSISQPDVDASN-GVIHVIDGVLMPG  136 (137)
T ss_dssp             SC---SSEEEECT-TSCEEEEECTT-S-----CEETTEECSBCCCBCSS-SEEEBCSSCCSSC
T ss_pred             hc---CCCeeecc-CCceEEEEecC-C-----EEEeCcEEEECCeecCC-eEEEEECeeeCCC
Confidence            74   57788898 67889998653 2     89999999999998776 5899999 66675

>1nyo_A Immunogenic protein MPT70; seven-stranded beta-barrel, fasciclin domain, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.118.1.1

Probab=99.74  E-value=1.2e-18  Score=156.94  Aligned_cols=115  Identities=23%  Similarity=0.279  Sum_probs=92.2

Q ss_pred             HHHHHHHHh-cChhHHHHHHH-----H-hH-HHHhccCCcEEEecCccccccCC----------cccc-ccceeeeecCc
Q 041188          235 RDAMLRLRN-NGYSILSLAMK-----V-KY-QELINLANMTVFALDDVSIFSGS----------YTYI-SNVRFHIIPNR  295 (409)
Q Consensus       235 ~~~~~~L~~-~gfs~~a~lL~-----~-~l-~~l~~~~~~TVFAPtD~Af~~~~----------~~~l-~iL~yHVVpg~  295 (409)
                      +++++.|++ ..|+.|..+|+     . .+ +.+...+ +|||||+|+||..+.          .+.+ ++|+|||||++
T Consensus        28 ~~i~~~l~~~~~~s~f~~~l~~~~~~~agl~~~L~~~g-~TvFAPtn~AF~~l~~~~~~~L~~~~~~L~~iL~yHvv~g~  106 (163)
T 1nyo_A           28 DPVAVAASNNPELTTLTAALSGQLNPQVNLVDTLNSGQ-YTVFAPTNAAFSKLPASTIDELKTNSSLLTSILTYHVVAGQ  106 (163)
T ss_dssp             SCHHHHHTTSTTTHHHHHHHHSSSCTTCCCHHHHTSSS-EEECCBCHHHHHHSCHHHHHHHTTCSSHHHHHHHHTEEESC
T ss_pred             cCHHHHHHhCCCHHHHHHHHHhccccccCHHHHhCCCC-cEEEEECHHHHHhccHHHHHHHhcCHHHHHHHHHhceECCE
Confidence            456777765 56999999998     5 34 5577667 999999999996652          2444 79999999999


Q ss_pred             ccChhhhccCCCCcccccccCCceEEEEEcCCcccccceEEccEEEecCceeecCCeEEEEec-CcCCC
Q 041188          296 YLTIGDLERLPVGTTLPTLARGQSLTVTTAGGASVTAPLRINYVRVKVPDVMKNLKIVVHGIY-LPFPH  363 (409)
Q Consensus       296 ~L~~~dL~~l~~g~~l~TLl~g~~L~vt~~~g~~~~~~l~VN~a~Vv~pDi~~~~~~VVHgId-~l~p~  363 (409)
                       ++.++|.    | .++|+ .|+.|.|+..++.     ++||+++|+.+|+...| ||||.|| +++|+
T Consensus       107 -~~~~~l~----g-~~~Tl-~G~~l~v~~~~~~-----v~vn~a~V~~~di~a~N-GvIHvID~VL~P~  162 (163)
T 1nyo_A          107 -TSPANVV----G-TRQTL-QGASVTVTGQGNS-----LKVGNADVVCGGVSTAN-ATVYMIDSVLMPP  162 (163)
T ss_dssp             -CCTTTSC----E-EEECT-TSSEEEEEECSSC-----EEETTEECSSBCCCCSS-EEEBCBSSCCCCC
T ss_pred             -EcHHHhC----C-ccccC-CCCEEEEEEECCE-----EEEeccEEEECceEcCC-EEEEEECcEeCCC
Confidence             5878873    4 68898 6888999988777     99999999999998754 6999999 55575

>1o70_A Fasciclin I, FAS I, FCN; cell adhesion, AXON guidance, extracellular module, genetic disorder, corneal dystrophy; HET: NAG; 2.6A {Drosophila melanogaster} SCOP: b.118.1.1 b.118.1.1

Probab=99.69  E-value=2e-17  Score=163.18  Aligned_cols=134  Identities=17%  Similarity=0.174  Sum_probs=101.9

Q ss_pred             cCCchhhhHHHHHHhcC-cHHHHHHhhccCcccccccCCCCeEEEeeCChhhhcCC------------C---CChhHHhh
Q 041188           55 SFFSHTAMLAPILSHLG-FNELATAAPSLSNDAVATSWSGPSTLFAPSDSSLHTCF------------S---CSVPSLLR  118 (409)
Q Consensus        55 ~~~s~~~~l~~~L~~~G-ft~la~lL~~~~~~~~~l~~~g~~TIFAPtD~AF~~l~------------~---~~L~~LL~  118 (409)
                      .+.++..++.+.|++.+ |+.|..+++.+++.+.+....+++|||||+|+||+++.            .   +.++++|+
T Consensus       153 VL~pp~~ti~~~l~~~~~fs~~~~~l~~~gl~~~L~~~~~~~TvFAPtd~Af~~l~~~~~~~~~~~l~~~~~~~l~~iL~  232 (324)
T 1o70_A          153 VLGVPYTTVLGKLESDPMMSDTYKMGKFSHFNDQLNNTQRRFTYFVPRDKGWQKTELDYPSAHKKLFMADFSYHSKSILE  232 (324)
T ss_dssp             CTTSCCSCHHHHHHHCGGGHHHHHHTTTTTTTGGGGCSSSEEEEEEECHHHHHHHHHHCHHHHHHHTSGGGHHHHHHHHH
T ss_pred             hhhhchhhHHHHhhcCchHHHHHHHHHhhCHHHHhCCCCCCeEEEEeChHHHHhhhhhchhHHHHHhccCcHHHHHHHHH
Confidence            34454557899998865 99999999999965443335789999999999999862            1   25789999


Q ss_pred             hcccCC--ccchHHHhcccC--C-CeeeccCCCceEEEeeCCCCccccceEEEc----cEEEeCcccc-cCCceEEEEec
Q 041188          119 EHLVPG--LFTIDYLRKLAF--G-TKIESLSPGRCITITSSKSENDTVSKVFIG----GVEITHPDLF-NNGIIIIHGIQ  188 (409)
Q Consensus       119 yHVvpg--~~~~~~L~~l~~--g-~~i~Tll~g~~L~Vt~~~~~~~~~~~v~Vn----ga~Vt~~Di~-~ng~~VIH~ID  188 (409)
                      |||+|+  .|+.++|.+...  + ..++|+.  ..+.|+...    .++.++||    +++|+.+|+. .||  |||+||
T Consensus       233 yHvv~~~~~~~~~~l~~~~~~~~~~~~~Tl~--~~l~v~~~~----~~~~v~v~~~~~~a~v~~~di~~~NG--vIHvID  304 (324)
T 1o70_A          233 RHLAISDKEYTMKDLVKFSQESGSVILPTFR--DSLSIRVEE----EAGRYVIIWNYKKINVYRPDVECTNG--IIHVID  304 (324)
T ss_dssp             TTEEEESSCCCHHHHHHHHHHSSSEEEECSS--SEEEEEEEE----ETTEEEEEETTEEEEEEEEEEEETTE--EEEEES
T ss_pred             hcEeCCcceEcHHHHhhhccCCCeeeeeccC--CcEEEEEEe----cCCEEEEEecCceeEEEEcccccCCC--eEEEec
Confidence            999999  999899986421  1 1478875  567776431    02568887    7999999997 465  999999


Q ss_pred             CccCCCCC
Q 041188          189 GYISPLSP  196 (409)
Q Consensus       189 ~VL~P~~~  196 (409)
                      +||.|+..
T Consensus       305 ~VL~P~~~  312 (324)
T 1o70_A          305 YPLLEEKD  312 (324)
T ss_dssp             SCSCCTTT
T ss_pred             eeecCCcc
Confidence            99999853

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	409
d1nyoa_	163	b.118.1.1 (A:) Immunogenic protein MPT70 {Mycobact	1e-04

>d1nyoa_ b.118.1.1 (A:) Immunogenic protein MPT70 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 163

class: All beta proteins
fold: FAS1 domain
superfamily: FAS1 domain
family: FAS1 domain
domain: Immunogenic protein MPT70
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 40.1 bits (93), Expect = 1e-04
 Identities = 19/123 (15%), Positives = 45/123 (36%), Gaps = 5/123 (4%)

Query: 72  FNELATAAPSLSNDAVATSWSGPSTLFAPSDSSLHTCFSCSVPSLLREHLVPGLFTIDYL 131
                +   +   + V T  SG  T+FAP++++     + ++  L        L +I   
Sbjct: 43  LTAALSGQLNPQVNLVDTLNSGQYTVFAPTNAAFSKLPASTIDELKTNS--SLLTSILTY 100

Query: 132 RKLAFGTKIESLSPGRCITITSSKSENDTVSKVFIGGVEITHPDL-FNNGIIIIHGIQGY 190
             +A  T   ++   R     +S +     + + +G  ++    +   N    ++ I   
Sbjct: 101 HVVAGQTSPANVVGTRQTLQGASVTVTGQGNSLKVGNADVVCGGVSTANA--TVYMIDSV 158

Query: 191 ISP 193
           + P
Sbjct: 159 LMP 161

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	409
d1nyoa_	163	Immunogenic protein MPT70 {Mycobacterium tuberculo	99.81
d1nyoa_	163	Immunogenic protein MPT70 {Mycobacterium tuberculo	99.69
d1o70a1	140	Fasciclin I {Fruit fly (Drosophila melanogaster) [	99.67
d1o70a2	157	Fasciclin I {Fruit fly (Drosophila melanogaster) [	99.65
d1o70a1	140	Fasciclin I {Fruit fly (Drosophila melanogaster) [	99.57
d1o70a2	157	Fasciclin I {Fruit fly (Drosophila melanogaster) [	99.42

>d1nyoa_ b.118.1.1 (A:) Immunogenic protein MPT70 {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: FAS1 domain
superfamily: FAS1 domain
family: FAS1 domain
domain: Immunogenic protein MPT70
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.81  E-value=5.3e-21  Score=170.71  Aligned_cols=118  Identities=19%  Similarity=0.268  Sum_probs=95.9

Q ss_pred             hHHHHHHhcC-cHHHHHHhhc-----cCcccccccCCCCeEEEeeCChhhhcCCC----------CChhHHhhhcccCCc
Q 041188           62 MLAPILSHLG-FNELATAAPS-----LSNDAVATSWSGPSTLFAPSDSSLHTCFS----------CSVPSLLREHLVPGL  125 (409)
Q Consensus        62 ~l~~~L~~~G-ft~la~lL~~-----~~~~~~~l~~~g~~TIFAPtD~AF~~l~~----------~~L~~LL~yHVvpg~  125 (409)
                      .+..+++... |++|..+|+.     +++. +.+. .|+||||||+|+||.+++.          ..|+++|+|||++|+
T Consensus        29 ~v~~~a~~~p~lstl~~Al~a~~~~~a~L~-~~L~-~gpfTvFAPtn~AF~~l~~~~~~~l~~~~~~L~~iL~yHVv~g~  106 (163)
T d1nyoa_          29 PVAVAASNNPELTTLTAALSGQLNPQVNLV-DTLN-SGQYTVFAPTNAAFSKLPASTIDELKTNSSLLTSILTYHVVAGQ  106 (163)
T ss_dssp             CHHHHHTTSTTTHHHHHHHHSSSCTTCCCH-HHHT-SSSEEECCBCHHHHHHSCHHHHHHHTTCSSHHHHHHHHTEEESC
T ss_pred             hHHHHHhcCCchHHHHHHHhhccccccchh-Hhhc-CCCeEEEEECcHHHHhcCHHHHHhhhhhHHHHHHhhhhhhhhhh
Confidence            4566666554 9999999984     5644 3344 4899999999999999863          358999999999999


Q ss_pred             cchHHHhcccCCCeeeccCCCceEEEeeCCCCccccceEEEccEEEeCcccc-cCCceEEEEecCccCCCC
Q 041188          126 FTIDYLRKLAFGTKIESLSPGRCITITSSKSENDTVSKVFIGGVEITHPDLF-NNGIIIIHGIQGYISPLS  195 (409)
Q Consensus       126 ~~~~~L~~l~~g~~i~Tll~g~~L~Vt~~~~~~~~~~~v~Vnga~Vt~~Di~-~ng~~VIH~ID~VL~P~~  195 (409)
                      +..+++..     .++|+ .|..+.|+..+      +.++||+++|+.+|+. .||  |||+||+||.||+
T Consensus       107 ~~~~~l~~-----~~~Tl-~G~~l~v~~~~------~~i~v~~a~Vv~~di~a~NG--vIHvID~VLlPPa  163 (163)
T d1nyoa_         107 TSPANVVG-----TRQTL-QGASVTVTGQG------NSLKVGNADVVCGGVSTANA--TVYMIDSVLMPPA  163 (163)
T ss_dssp             CCTTTSCE-----EEECT-TSSEEEEEECS------SCEEETTEECSSBCCCCSSE--EEBCBSSCCCCCC
T ss_pred             hhhhhhhh-----hhhhc-cCcceeEEecC------CEEEEeceEEEECCeecCCc--EEEEECccccCCC
Confidence            99999864     36664 78889998765      5899999999999997 455  9999999999974

>d1nyoa_ b.118.1.1 (A:) Immunogenic protein MPT70 {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: FAS1 domain
superfamily: FAS1 domain
family: FAS1 domain
domain: Immunogenic protein MPT70
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.69  E-value=5e-18  Score=151.18  Aligned_cols=106  Identities=24%  Similarity=0.299  Sum_probs=84.2

Q ss_pred             cChhHHHHHHHH------hH-HHHhccCCcEEEecCccccccCC----------cccc-ccceeeeecCcccChhhhccC
Q 041188          244 NGYSILSLAMKV------KY-QELINLANMTVFALDDVSIFSGS----------YTYI-SNVRFHIIPNRYLTIGDLERL  305 (409)
Q Consensus       244 ~gfs~~a~lL~~------~l-~~l~~~~~~TVFAPtD~Af~~~~----------~~~l-~iL~yHVVpg~~L~~~dL~~l  305 (409)
                      ..|++|..++.+      .| +.+. .++||||||+|+||....          .+.+ ++|+|||+||+ ++.+++.  
T Consensus        38 p~lstl~~Al~a~~~~~a~L~~~L~-~gpfTvFAPtn~AF~~l~~~~~~~l~~~~~~L~~iL~yHVv~g~-~~~~~l~--  113 (163)
T d1nyoa_          38 PELTTLTAALSGQLNPQVNLVDTLN-SGQYTVFAPTNAAFSKLPASTIDELKTNSSLLTSILTYHVVAGQ-TSPANVV--  113 (163)
T ss_dssp             TTTHHHHHHHHSSSCTTCCCHHHHT-SSSEEECCBCHHHHHHSCHHHHHHHTTCSSHHHHHHHHTEEESC-CCTTTSC--
T ss_pred             CchHHHHHHHhhccccccchhHhhc-CCCeEEEEECcHHHHhcCHHHHHhhhhhHHHHHHhhhhhhhhhh-hhhhhhh--
Confidence            348999999874      34 3455 478999999999996642          3445 89999999999 5778773  


Q ss_pred             CCCcccccccCCceEEEEEcCCcccccceEEccEEEecCceeecCCeEEEEec-CcCCC
Q 041188          306 PVGTTLPTLARGQSLTVTTAGGASVTAPLRINYVRVKVPDVMKNLKIVVHGIY-LPFPH  363 (409)
Q Consensus       306 ~~g~~l~TLl~g~~L~vt~~~g~~~~~~l~VN~a~Vv~pDi~~~~~~VVHgId-~l~p~  363 (409)
                        + .++|+ .|..|.|+..++.     ++||+++|+.+||..+| ||||.|| +++||
T Consensus       114 --~-~~~Tl-~G~~l~v~~~~~~-----i~v~~a~Vv~~di~a~N-GvIHvID~VLlPP  162 (163)
T d1nyoa_         114 --G-TRQTL-QGASVTVTGQGNS-----LKVGNADVVCGGVSTAN-ATVYMIDSVLMPP  162 (163)
T ss_dssp             --E-EEECT-TSSEEEEEECSSC-----EEETTEECSSBCCCCSS-EEEBCBSSCCCCC
T ss_pred             --h-hhhhc-cCcceeEEecCCE-----EEEeceEEEECCeecCC-cEEEEECccccCC
Confidence              2 46787 6888999988777     99999999999998765 6899999 66686

>d1o70a1 b.118.1.1 (A:328-467) Fasciclin I {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: FAS1 domain
superfamily: FAS1 domain
family: FAS1 domain
domain: Fasciclin I
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.67  E-value=2.6e-17  Score=140.68  Aligned_cols=121  Identities=11%  Similarity=0.148  Sum_probs=84.0

Q ss_pred             cCcHHHHHHhhccCc-ccccccCCCCeEEEeeCChhhhcCCC-------CChhHHhhhcccCCccchHHHhcccC--CCe
Q 041188           70 LGFNELATAAPSLSN-DAVATSWSGPSTLFAPSDSSLHTCFS-------CSVPSLLREHLVPGLFTIDYLRKLAF--GTK  139 (409)
Q Consensus        70 ~Gft~la~lL~~~~~-~~~~l~~~g~~TIFAPtD~AF~~l~~-------~~L~~LL~yHVvpg~~~~~~L~~l~~--g~~  139 (409)
                      .+|+.|.++++..+. +.+.+...+++|||||+|+||.++..       ..++.+|+|||+||.+..++|.+...  ...
T Consensus         4 ~~~~~f~~~i~~~g~~~~~~l~~~~~~TvFAPtn~Af~~~~~~~~~~~~~~l~~~l~yHiv~~~~~~~~l~~~~~~~~~~   83 (140)
T d1o70a1           4 GALRKFYEVIMDNGGAVLDDINSLTEVTILAPSNEAWNSSNINNVLRDRNKMRQILNMHIIKDRLNVDKIRQKNANLIAQ   83 (140)
T ss_dssp             HHHHHHHHHHHHTCSHHHHHHHTCSSEEEEEECHHHHHHTCTHHHHTCHHHHHHHHHHTEESSCCCHHHHHHHTSSSCCC
T ss_pred             ccHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECHHHHhcCChhhhcCCHHHHHHHHHhhccCCeEEHHHHhcCcccCceE
Confidence            346777777777651 11224556899999999999998654       24789999999999999999986422  235


Q ss_pred             eeccCCCceEEEeeCCCCccccceEEE----ccEEEeCcccc-cCCceEEEEecCccCCC
Q 041188          140 IESLSPGRCITITSSKSENDTVSKVFI----GGVEITHPDLF-NNGIIIIHGIQGYISPL  194 (409)
Q Consensus       140 i~Tll~g~~L~Vt~~~~~~~~~~~v~V----nga~Vt~~Di~-~ng~~VIH~ID~VL~P~  194 (409)
                      ++|+..+....+...++  .....+.+    +.++|+.+|+. .||  |||+||+||.||
T Consensus        84 ~~t~~g~~~~~~~~~~~--~~~~~~~~~~~~~~a~V~~~Di~~~NG--vIH~ID~VL~~P  139 (140)
T d1o70a1          84 VPTVNNNTFLYFNVRGE--GSDTVITVEGGGVNATVIQADVAQTNG--YVHIIDHVLGVP  139 (140)
T ss_dssp             EEBSSTTCEEEEEEESC--GGGCEEEEEETTEEEEEEEEEEECSSE--EEEEESSCTTSC
T ss_pred             eeecCCCceEEEEEecc--ceeEEEEecCCcceEEEEeCCEecCCe--EEEEECCccCCc
Confidence            67776554444433221  01223443    34899999996 455  999999999997

>d1o70a2 b.118.1.1 (A:468-624) Fasciclin I {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: FAS1 domain
superfamily: FAS1 domain
family: FAS1 domain
domain: Fasciclin I
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.65  E-value=4.3e-17  Score=142.24  Aligned_cols=125  Identities=16%  Similarity=0.130  Sum_probs=84.7

Q ss_pred             HHHHHHhcC-cHHHHHHhhccCcccccccCCCCeEEEeeCChhhhcCCC---------------CChhHHhhhcccCCcc
Q 041188           63 LAPILSHLG-FNELATAAPSLSNDAVATSWSGPSTLFAPSDSSLHTCFS---------------CSVPSLLREHLVPGLF  126 (409)
Q Consensus        63 l~~~L~~~G-ft~la~lL~~~~~~~~~l~~~g~~TIFAPtD~AF~~l~~---------------~~L~~LL~yHVvpg~~  126 (409)
                      +.+.|+... |..|..+++.+++...+....+++|||||+|+||+++..               ..++.+|+|||+||..
T Consensus         3 i~~~l~~~p~ls~~~~~~~~s~l~~~L~~~~~~~TvFaPtn~Af~~l~~~~~~~~~~~~~~~~~~~l~~il~~Hiv~g~~   82 (157)
T d1o70a2           3 VLGKLESDPMMSDTYKMGKFSHFNDQLNNTQRRFTYFVPRDKGWQKTELDYPSAHKKLFMADFSYHSKSILERHLAISDK   82 (157)
T ss_dssp             HHHHHHHCGGGHHHHHHTTTTTTTGGGGCSSSEEEEEEECHHHHHHHHHHCHHHHHHHTSGGGHHHHHHHHHTTEEEESS
T ss_pred             HHHHHHhCccHHHHHHHHHhCCHHHHHhCCCCceEEEecCHHHHHHhhhhccchhhhhcCcccHHHHHHHheeEEecccc
Confidence            456666554 899999999998665555556899999999999998631               2478899999999876


Q ss_pred             chHHHh--cc---cCCCeeeccCCCceEEEeeCCCCccccceEEE----ccEEEeCcccc-cCCceEEEEecCccCCCC
Q 041188          127 TIDYLR--KL---AFGTKIESLSPGRCITITSSKSENDTVSKVFI----GGVEITHPDLF-NNGIIIIHGIQGYISPLS  195 (409)
Q Consensus       127 ~~~~L~--~l---~~g~~i~Tll~g~~L~Vt~~~~~~~~~~~v~V----nga~Vt~~Di~-~ng~~VIH~ID~VL~P~~  195 (409)
                      ...+..  ..   ......+++.....+.+...+      +.+.+    |+++|+.+|+. .||  |||+||+||.|+.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~a~V~~~Di~a~NG--viHvID~VLlp~~  153 (157)
T d1o70a2          83 EYTMKDLVKFSQESGSVILPTFRDSLSIRVEEEA------GRYVIIWNYKKINVYRPDVECTNG--IIHVIDYPLLEEK  153 (157)
T ss_dssp             CCCHHHHHHHHHHSSSEEEECSSSEEEEEEEEET------TEEEEEETTEEEEEEEEEEEETTE--EEEEESSCSCCTT
T ss_pred             cchhhhhhhhhccCCceeEEecCCcEEEEEEcCC------cEEEEecCCccceEEECCEecCCe--EEEEECceecCCC
Confidence            544322  11   112233444222333444433      23333    56999999997 455  9999999999953

>d1o70a1 b.118.1.1 (A:328-467) Fasciclin I {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: FAS1 domain
superfamily: FAS1 domain
family: FAS1 domain
domain: Fasciclin I
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.57  E-value=1.1e-15  Score=130.49  Aligned_cols=117  Identities=16%  Similarity=0.179  Sum_probs=79.1

Q ss_pred             cChhHHHHHHHHh---H-HHHhccCCcEEEecCccccccCC-------cccc-ccceeeeecCcccChhhhccCCC--Cc
Q 041188          244 NGYSILSLAMKVK---Y-QELINLANMTVFALDDVSIFSGS-------YTYI-SNVRFHIIPNRYLTIGDLERLPV--GT  309 (409)
Q Consensus       244 ~gfs~~a~lL~~~---l-~~l~~~~~~TVFAPtD~Af~~~~-------~~~l-~iL~yHVVpg~~L~~~dL~~l~~--g~  309 (409)
                      .+|+.|..+++..   + .++...+++|||||+|+||....       .+.+ .+|+|||+|++ ++.+++.....  ..
T Consensus         4 ~~~~~f~~~i~~~g~~~~~~l~~~~~~TvFAPtn~Af~~~~~~~~~~~~~~l~~~l~yHiv~~~-~~~~~l~~~~~~~~~   82 (140)
T d1o70a1           4 GALRKFYEVIMDNGGAVLDDINSLTEVTILAPSNEAWNSSNINNVLRDRNKMRQILNMHIIKDR-LNVDKIRQKNANLIA   82 (140)
T ss_dssp             HHHHHHHHHHHHTCSHHHHHHHTCSSEEEEEECHHHHHHTCTHHHHTCHHHHHHHHHHTEESSC-CCHHHHHHHTSSSCC
T ss_pred             ccHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECHHHHhcCChhhhcCCHHHHHHHHHhhccCCe-EEHHHHhcCcccCce
Confidence            4567777777643   3 56777789999999999996542       3444 78999999999 58888764221  23


Q ss_pred             ccccccCCceEEEEEcCCcccccceEE----ccEEEecCceeecCCeEEEEecCcC-CC
Q 041188          310 TLPTLARGQSLTVTTAGGASVTAPLRI----NYVRVKVPDVMKNLKIVVHGIYLPF-PH  363 (409)
Q Consensus       310 ~l~TLl~g~~L~vt~~~g~~~~~~l~V----N~a~Vv~pDi~~~~~~VVHgId~l~-p~  363 (409)
                      .++|+.++....+....+. ....+.+    +.++|+.+|+.+.+ ||||.||.+| ||
T Consensus        83 ~~~t~~g~~~~~~~~~~~~-~~~~~~~~~~~~~a~V~~~Di~~~N-GvIH~ID~VL~~P  139 (140)
T d1o70a1          83 QVPTVNNNTFLYFNVRGEG-SDTVITVEGGGVNATVIQADVAQTN-GYVHIIDHVLGVP  139 (140)
T ss_dssp             CEEBSSTTCEEEEEEESCG-GGCEEEEEETTEEEEEEEEEEECSS-EEEEEESSCTTSC
T ss_pred             EeeecCCCceEEEEEeccc-eeEEEEecCCcceEEEEeCCEecCC-eEEEEECCccCCc
Confidence            5788865554444433221 1223443    34899999998765 6899999554 55

>d1o70a2 b.118.1.1 (A:468-624) Fasciclin I {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: FAS1 domain
superfamily: FAS1 domain
family: FAS1 domain
domain: Fasciclin I
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.42  E-value=2.6e-14  Score=124.28  Aligned_cols=118  Identities=21%  Similarity=0.138  Sum_probs=73.5

Q ss_pred             HHHHHh-cChhHHHHHHHHh-H-HHHhc-cCCcEEEecCccccccCC---------------cccc-ccceeeeecCccc
Q 041188          238 MLRLRN-NGYSILSLAMKVK-Y-QELIN-LANMTVFALDDVSIFSGS---------------YTYI-SNVRFHIIPNRYL  297 (409)
Q Consensus       238 ~~~L~~-~gfs~~a~lL~~~-l-~~l~~-~~~~TVFAPtD~Af~~~~---------------~~~l-~iL~yHVVpg~~L  297 (409)
                      .+.++. ..|+.|..+++.. + ..+.. .+++|||||+|+||.++.               .+.+ ++|+|||+||+. 
T Consensus         4 ~~~l~~~p~ls~~~~~~~~s~l~~~L~~~~~~~TvFaPtn~Af~~l~~~~~~~~~~~~~~~~~~~l~~il~~Hiv~g~~-   82 (157)
T d1o70a2           4 LGKLESDPMMSDTYKMGKFSHFNDQLNNTQRRFTYFVPRDKGWQKTELDYPSAHKKLFMADFSYHSKSILERHLAISDK-   82 (157)
T ss_dssp             HHHHHHCGGGHHHHHHTTTTTTTGGGGCSSSEEEEEEECHHHHHHHHHHCHHHHHHHTSGGGHHHHHHHHHTTEEEESS-
T ss_pred             HHHHHhCccHHHHHHHHHhCCHHHHHhCCCCceEEEecCHHHHHHhhhhccchhhhhcCcccHHHHHHHheeEEecccc-
Confidence            344443 4477888777642 4 34554 357999999999996531               2334 789999999863 


Q ss_pred             Chhh--hc---cCCCCcccccccCCc-eEEEEEcCCcccccceEE----ccEEEecCceeecCCeEEEEec-CcCCC
Q 041188          298 TIGD--LE---RLPVGTTLPTLARGQ-SLTVTTAGGASVTAPLRI----NYVRVKVPDVMKNLKIVVHGIY-LPFPH  363 (409)
Q Consensus       298 ~~~d--L~---~l~~g~~l~TLl~g~-~L~vt~~~g~~~~~~l~V----N~a~Vv~pDi~~~~~~VVHgId-~l~p~  363 (409)
                      ...+  +.   ........+|+ ++. .+.+...++.     +.+    |+++|+.+|+.+.| ||||.|| +++|+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~~~~a~V~~~Di~a~N-GviHvID~VLlp~  152 (157)
T d1o70a2          83 EYTMKDLVKFSQESGSVILPTF-RDSLSIRVEEEAGR-----YVIIWNYKKINVYRPDVECTN-GIIHVIDYPLLEE  152 (157)
T ss_dssp             CCCHHHHHHHHHHSSSEEEECS-SSEEEEEEEEETTE-----EEEEETTEEEEEEEEEEEETT-EEEEEESSCSCCT
T ss_pred             cchhhhhhhhhccCCceeEEec-CCcEEEEEEcCCcE-----EEEecCCccceEEECCEecCC-eEEEEECceecCC
Confidence            3222  11   01123344555 443 4445555554     333    66999999998876 5899999 55564