Citrus Sinensis ID: 041208

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------9
Protein Sequence
MELLTTRSWDFLGMEKDNIMPPNSLWNKARFGEDVIIGNIDTDFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRKEGPLKPEWHLIEYA
Secondary Structure (PSIPRED)
cccccccccccccccccccccccHHHHHcccccccEEEccccccccccccEEccccccccccccEEEEcccccccccccccccEEEEcc
Secondary Structure Prediction (SSPRO)
ccccccccHHHccccccccccccHHHHHHcccccEEEEEEccccccccccHHHHcccccccccEEEcccccccccccccccccEEEEEc
Coil and Loop (DISEMBL)
mellttrswdflgmekdnimppnslwnkarfgedviignidtdfhghgthtlstvggSFVKnvsafgnvgdgqrkegplkpewhlieya
Flexible Loop (DISEMBL)
mellttrswdflgmekdnimppnsLWNKARFGEDVIIGNIDTDFHGHGTHTLSTVGGSFVKNVSAFgnvgdgqrkegplkpewhlieya
Low Complexity Region (SEG)
MELLTTRSWDFLGMEKDNIMPPNSLWNKARFGEDVIIGNIDTDFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRKEGPLKPEWHLIEYA
Disordered region (IsUnstruct)
******RSWDFLGMEKDNIMPPNSLWNKARFGEDVIIGNIDTDFHGHGTHTLSTVGGSFVKNVSAFGNV********************
Disordered Region (DISOPRED)
MELLTTRSWDFLGMEKDNI******W**ARFGEDVIIGNIDTDFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRKEGPLKPEWHLIEYA
Disordered Region (DISEMBL)
MELLTTRSWDFLGMEKDNIMPPNSLWNKARFGEDVIIGNIDTDFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRKEGPLKPEWHLIEYA
Disordered Region (DISPRO)
*ELLTTRSWDFLGMEKDNIMPPNSLWNKARFGEDVIIGNIDTDFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRKEGPLKPEWHLIEYA
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MELLTTRSWDFLGMEKDNIMPPNSLWNKARFGEDVIIGNIDTDFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRKEGPLKPEWHLIEYA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	89
224122316	775	predicted protein [Populus trichocarpa]	0.449	0.051	0.707	1e-10
255568094	745	Xylem serine proteinase 1 precursor, put	0.314	0.037	0.682	3e-10
255568082	766	Xylem serine proteinase 1 precursor, put	0.426	0.049	0.731	4e-10
224056865	772	predicted protein [Populus trichocarpa]	0.460	0.053	0.707	4e-10
227053577	771	subtilisin-like serine protease [Carica	0.460	0.053	0.658	8e-10
297744931	772	unnamed protein product [Vitis vinifera]	0.449	0.051	0.658	2e-09
255567212	771	Xylem serine proteinase 1 precursor, put	0.393	0.045	0.634	2e-09
359496840	767	PREDICTED: subtilisin-like protease-like	0.449	0.052	0.658	2e-09
86439745	722	subtilisin-like protease [Triticum aesti	0.449	0.055	0.707	2e-09
225447456	769	PREDICTED: subtilisin-like protease [Vit	0.359	0.041	0.682	3e-09

>gi|224122316|ref|XP_002330593.1| predicted protein [Populus trichocarpa] gi|222872151|gb|EEF09282.1| predicted protein [Populus trichocarpa]

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/41 (70%), Positives = 36/41 (87%)

Query: 2   ELLTTRSWDFLGMEKDNIMPPNSLWNKARFGEDVIIGNIDT 42
           +L TT SW FLG+EKD ++PP+SLW KAR+GEDVIIGN+DT
Sbjct: 113 KLHTTHSWSFLGLEKDGVVPPSSLWKKARYGEDVIIGNLDT 153

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568094|ref|XP_002525023.1| Xylem serine proteinase 1 precursor, putative [Ricinus communis] gi|223535685|gb|EEF37350.1| Xylem serine proteinase 1 precursor, putative [Ricinus communis]

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/41 (68%), Positives = 37/41 (90%)

Query: 2   ELLTTRSWDFLGMEKDNIMPPNSLWNKARFGEDVIIGNIDT 42
           EL TTRSW+FLG+E++  +PP+S+W KARFGED+IIGN+DT
Sbjct: 92  ELHTTRSWEFLGLERNGHIPPDSIWPKARFGEDIIIGNLDT 132

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568082|ref|XP_002525017.1| Xylem serine proteinase 1 precursor, putative [Ricinus communis] gi|223535679|gb|EEF37344.1| Xylem serine proteinase 1 precursor, putative [Ricinus communis]

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/41 (73%), Positives = 36/41 (87%)

Query: 2   ELLTTRSWDFLGMEKDNIMPPNSLWNKARFGEDVIIGNIDT 42
           EL TTRSW+FLG+E++  +P NSLW KARFGEDVIIGN+DT
Sbjct: 114 ELHTTRSWEFLGLERNGRIPANSLWLKARFGEDVIIGNLDT 154

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224056865|ref|XP_002299062.1| predicted protein [Populus trichocarpa] gi|222846320|gb|EEE83867.1| predicted protein [Populus trichocarpa]

 Score = 68.6 bits (166), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/41 (70%), Positives = 36/41 (87%)

Query: 2   ELLTTRSWDFLGMEKDNIMPPNSLWNKARFGEDVIIGNIDT 42
           +L TTRSW+FLG+E D ++PP SLW KAR+GEDVIIGN+DT
Sbjct: 114 KLHTTRSWNFLGLEADGMVPPYSLWKKARYGEDVIIGNLDT 154

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|227053577|gb|ACP18876.1| subtilisin-like serine protease [Carica papaya]

 Score = 67.8 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 36/41 (87%)

Query: 2   ELLTTRSWDFLGMEKDNIMPPNSLWNKARFGEDVIIGNIDT 42
           +L TTRSWDFLG+E++ ++P +S+W KARFGED IIGN+DT
Sbjct: 112 KLHTTRSWDFLGLEQNGVVPSSSIWKKARFGEDTIIGNLDT 152

Source: Carica papaya

Species: Carica papaya

Genus: Carica

Family: Caricaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744931|emb|CBI38462.3| unnamed protein product [Vitis vinifera]

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 36/41 (87%)

Query: 2   ELLTTRSWDFLGMEKDNIMPPNSLWNKARFGEDVIIGNIDT 42
           EL TTRSW+FLG+E++  +P NS+W KARFGE++IIGN+DT
Sbjct: 118 ELHTTRSWEFLGLERNGEIPANSIWVKARFGEEIIIGNLDT 158

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567212|ref|XP_002524587.1| Xylem serine proteinase 1 precursor, putative [Ricinus communis] gi|223536140|gb|EEF37795.1| Xylem serine proteinase 1 precursor, putative [Ricinus communis]

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/41 (63%), Positives = 35/41 (85%)

Query: 2   ELLTTRSWDFLGMEKDNIMPPNSLWNKARFGEDVIIGNIDT 42
           +L TT SW FLG+E+D ++P NSLW KAR+G+D+IIGN+DT
Sbjct: 112 KLHTTHSWSFLGLEQDGVVPSNSLWKKARYGQDIIIGNLDT 152

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496840|ref|XP_002269259.2| PREDICTED: subtilisin-like protease-like [Vitis vinifera]

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 36/41 (87%)

Query: 2   ELLTTRSWDFLGMEKDNIMPPNSLWNKARFGEDVIIGNIDT 42
           EL TTRSW+FLG+E++  +P NS+W KARFGE++IIGN+DT
Sbjct: 113 ELHTTRSWEFLGLERNGEIPANSIWVKARFGEEIIIGNLDT 153

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|86439745|emb|CAJ75644.1| subtilisin-like protease [Triticum aestivum]

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/41 (70%), Positives = 35/41 (85%)

Query: 2  ELLTTRSWDFLGMEKDNIMPPNSLWNKARFGEDVIIGNIDT 42
          +L TTRSW+FLGMEKD  + PNS+W KAR+GE VIIGN+DT
Sbjct: 38 KLHTTRSWEFLGMEKDGRVRPNSIWAKARYGEGVIIGNLDT 78

Source: Triticum aestivum

Species: Triticum aestivum

Genus: Triticum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447456|ref|XP_002266728.1| PREDICTED: subtilisin-like protease [Vitis vinifera] gi|296085071|emb|CBI28486.3| unnamed protein product [Vitis vinifera]

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/41 (68%), Positives = 34/41 (82%)

Query: 2   ELLTTRSWDFLGMEKDNIMPPNSLWNKARFGEDVIIGNIDT 42
           +L TTRSW FLG+E D I+P NS+W KARFG+D IIGN+DT
Sbjct: 112 KLHTTRSWHFLGLENDGIIPSNSIWKKARFGQDTIIGNLDT 152

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	89
TAIR|locus:2050215	772	AIR3 "AT2G04160" [Arabidopsis	0.471	0.054	0.619	2.4e-17
UNIPROTKB|Q8H4X8	762	OJ1136_A10.113 "Putative subti	0.471	0.055	0.547	3.5e-16
UNIPROTKB|Q6H733	799	P0026H03.20-1 "Putative subtil	0.460	0.051	0.585	8e-14
UNIPROTKB|Q0JIK4	375	Os01g0795400 "Os01g0795400 pro	0.426	0.101	0.658	2.2e-13
TAIR|locus:2168057	778	SBT5.4 "AT5G59810" [Arabidopsi	0.460	0.052	0.512	3.2e-13
UNIPROTKB|Q0JK21	741	Os01g0702300 "Os01g0702300 pro	0.404	0.048	0.605	2e-12
TAIR|locus:2037895	774	SBT3.5 "AT1G32940" [Arabidopsi	0.426	0.049	0.536	3.7e-12
TAIR|locus:2127706	756	AT4G10520 "AT4G10520" [Arabido	0.483	0.056	0.5	2.4e-11
TAIR|locus:2136824	746	UNE17 "AT4G26330" [Arabidopsis	0.415	0.049	0.552	3.8e-11
TAIR|locus:2037935	777	SBT3.3 "AT1G32960" [Arabidopsi	0.426	0.048	0.487	6.7e-11

TAIR|locus:2050215 AIR3 "AT2G04160" [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 2.4e-17, Sum P(2) = 2.4e-17
 Identities = 26/42 (61%), Positives = 35/42 (83%)

Query:     1 MELLTTRSWDFLGMEKDNIMPPNSLWNKARFGEDVIIGNIDT 42
             ++L TTRSWDFLG+E ++ +P +S+W KARFGED II N+DT
Sbjct:   113 LKLHTTRSWDFLGLEHNSYVPSSSIWRKARFGEDTIIANLDT 154

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;ISS;IBA

GO:0005576 "extracellular region" evidence=ISM

GO:0005618 "cell wall" evidence=IBA

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IBA

GO:0042802 "identical protein binding" evidence=IEA

GO:0043086 "negative regulation of catalytic activity" evidence=IEA

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0010102 "lateral root morphogenesis" evidence=IEP

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

UNIPROTKB|Q8H4X8 OJ1136_A10.113 "Putative subtilisin-like serine protease AIR3" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 136 (52.9 bits), Expect = 3.5e-16, Sum P(2) = 3.5e-16
 Identities = 23/42 (54%), Positives = 33/42 (78%)

Query:     1 MELLTTRSWDFLGMEKDNIMPPNSLWNKARFGEDVIIGNIDT 42
             ++L TTRSWDF+ ME+D  + P+S+W   RFG+DVII N+D+
Sbjct:   100 LKLHTTRSWDFMDMERDGQILPDSIWKHGRFGQDVIIANLDS 141

GO:0004252 "serine-type endopeptidase activity" evidence=ISS

GO:0005618 "cell wall" evidence=ISS

UNIPROTKB|Q6H733 P0026H03.20-1 "Putative subtilisin-like proteinase AIR3" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 126 (49.4 bits), Expect = 8.0e-14, Sum P(2) = 8.0e-14
 Identities = 24/41 (58%), Positives = 28/41 (68%)

Query:     2 ELLTTRSWDFLGMEKDNIMPPNSLWNKARFGEDVIIGNIDT 42
             +L TTRSW FLG+      P  + W KARFGED IIGN+DT
Sbjct:   131 KLHTTRSWQFLGLAGVGGAPTGAAWKKARFGEDTIIGNLDT 171

GO:0004252 "serine-type endopeptidase activity" evidence=ISS

GO:0005618 "cell wall" evidence=ISS

UNIPROTKB|Q0JIK4 Os01g0795400 "Os01g0795400 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 137 (53.3 bits), Expect = 2.2e-13, Sum P(2) = 2.2e-13
 Identities = 27/41 (65%), Positives = 32/41 (78%)

Query:     2 ELLTTRSWDFLGMEKDNIMPPNSLWNKARFGEDVIIGNIDT 42
             ELLTTRSWDFLG+   N  PPN L  ++++GEDVIIG IDT
Sbjct:   103 ELLTTRSWDFLGL---NYQPPNKLLQRSKYGEDVIIGMIDT 140

GO:0004252 "serine-type endopeptidase activity" evidence=ISS

GO:0005618 "cell wall" evidence=ISS

TAIR|locus:2168057 SBT5.4 "AT5G59810" [Arabidopsis thaliana (taxid:3702)]

 Score = 120 (47.3 bits), Expect = 3.2e-13, Sum P(2) = 3.2e-13
 Identities = 21/41 (51%), Positives = 31/41 (75%)

Query:     2 ELLTTRSWDFLGMEKDNIMPPNSLWNKARFGEDVIIGNIDT 42
             +L TT SW+F+ + K+ ++  +SLWNKA +GED II N+DT
Sbjct:   124 KLHTTHSWNFMLLAKNGVVHKSSLWNKAGYGEDTIIANLDT 164

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;IBA

GO:0005618 "cell wall" evidence=IBA

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IBA

GO:0042802 "identical protein binding" evidence=IEA

GO:0043086 "negative regulation of catalytic activity" evidence=IEA

UNIPROTKB|Q0JK21 Os01g0702300 "Os01g0702300 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 107 (42.7 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
 Identities = 23/38 (60%), Positives = 26/38 (68%)

Query:    43 DFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRKEG-PL 79
             D+ GHGTHTLST GG FV + S FG+ G G  K G PL
Sbjct:   172 DYIGHGTHTLSTAGGGFVPDASVFGH-GKGTAKGGSPL 208

GO:0004252 "serine-type endopeptidase activity" evidence=ISS

GO:0005618 "cell wall" evidence=ISS

TAIR|locus:2037895 SBT3.5 "AT1G32940" [Arabidopsis thaliana (taxid:3702)]

 Score = 104 (41.7 bits), Expect = 3.7e-12, Sum P(2) = 3.7e-12
 Identities = 22/41 (53%), Positives = 27/41 (65%)

Query:     2 ELLTTRSWDFLGMEKDNIMPPNSLWNKARFGEDVIIGNIDT 42
             EL TTR+WD+LG+   N   PN+L N    G+ VIIG IDT
Sbjct:   106 ELATTRTWDYLGLSVAN---PNNLLNDTNMGDQVIIGFIDT 143

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;IBA

GO:0005576 "extracellular region" evidence=ISM

GO:0005618 "cell wall" evidence=IBA

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IBA

GO:0042802 "identical protein binding" evidence=IEA

GO:0043086 "negative regulation of catalytic activity" evidence=IEA

GO:0048046 "apoplast" evidence=IDA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0042631 "cellular response to water deprivation" evidence=RCA

TAIR|locus:2127706 AT4G10520 "AT4G10520" [Arabidopsis thaliana (taxid:3702)]

 Score = 103 (41.3 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
 Identities = 23/46 (50%), Positives = 28/46 (60%)

Query:    43 DFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRKEGPLKPEWHLIEY 88
             DF GHGTH  ST+GGSF+ NVS  G +G G  + G   P  H+  Y
Sbjct:   214 DFAGHGTHVASTIGGSFLPNVSYVG-LGRGTARGGA--PGVHIAVY 256

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;IBA

GO:0005576 "extracellular region" evidence=ISM

GO:0005618 "cell wall" evidence=IBA

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IBA

GO:0042802 "identical protein binding" evidence=IEA

GO:0043086 "negative regulation of catalytic activity" evidence=IEA

TAIR|locus:2136824 UNE17 "AT4G26330" [Arabidopsis thaliana (taxid:3702)]

 Score = 98 (39.6 bits), Expect = 3.8e-11, Sum P(2) = 3.8e-11
 Identities = 21/38 (55%), Positives = 25/38 (65%)

Query:    43 DFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRKEG-PL 79
             D+ GHGTHT ST  GS V+NVS F  +G G  + G PL
Sbjct:   184 DYLGHGTHTASTAVGSVVRNVSGFFGLGRGTARGGAPL 221

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;IBA

GO:0005618 "cell wall" evidence=IBA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005777 "peroxisome" evidence=TAS

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IBA

GO:0042802 "identical protein binding" evidence=IEA

GO:0043086 "negative regulation of catalytic activity" evidence=IEA

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IMP

TAIR|locus:2037935 SBT3.3 "AT1G32960" [Arabidopsis thaliana (taxid:3702)]

 Score = 96 (38.9 bits), Expect = 6.7e-11, Sum P(2) = 6.7e-11
 Identities = 20/41 (48%), Positives = 26/41 (63%)

Query:     2 ELLTTRSWDFLGMEKDNIMPPNSLWNKARFGEDVIIGNIDT 42
             EL TTR+W++LG+   N   P +L N    G+ VIIG IDT
Sbjct:   109 ELATTRTWEYLGLSSAN---PKNLLNDTNMGDQVIIGVIDT 146

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;IBA

GO:0005576 "extracellular region" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IBA

GO:0042802 "identical protein binding" evidence=IEA

GO:0043086 "negative regulation of catalytic activity" evidence=IEA

GO:0048046 "apoplast" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	89
cd04852	307	cd04852, Peptidases_S8_3, Peptidase S8 family doma	1e-09
cd04852	307	cd04852, Peptidases_S8_3, Peptidase S8 family doma	1e-06
cd04077	255	cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep	9e-05

>gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3

 Score = 52.2 bits (126), Expect = 1e-09
 Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 3/41 (7%)

Query: 2  ELLTTRSWDFLGMEKDNIMPPNSLWNKARFGEDVIIGNIDT 42
          +L TTRS DFLG+         SL   A  GE +IIG +DT
Sbjct: 2  QLHTTRSPDFLGLPGAW---GGSLLGAANAGEGIIIGVLDT 39

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307

>gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3

 Score = 43.7 bits (104), Expect = 1e-06
 Identities = 14/27 (51%), Positives = 16/27 (59%)

Query: 43  DFHGHGTHTLSTVGGSFVKNVSAFGNV 69
           D+ GHGTHT ST  G+ V N S  G  
Sbjct: 106 DYDGHGTHTASTAAGNVVVNASVGGFA 132

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307

>gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins

 Score = 38.7 bits (91), Expect = 9e-05
 Identities = 15/30 (50%), Positives = 20/30 (66%)

Query: 29 ARFGEDVIIGNIDTDFHGHGTHTLSTVGGS 58
          A +G D + G+ D+D +GHGTH   TVGG 
Sbjct: 47 AIWGADFVGGDPDSDCNGHGTHVAGTVGGK 76

The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	89
cd04852	307	Peptidases_S8_3 Peptidase S8 family domain, unchar	99.81
cd07497	311	Peptidases_S8_14 Peptidase S8 family domain, uncha	99.41
cd07479	255	Peptidases_S8_SKI-1_like Peptidase S8 family domai	99.26
cd07478	455	Peptidases_S8_CspA-like Peptidase S8 family domain	99.19
cd04059	297	Peptidases_S8_Protein_convertases_Kexins_Furin-lik	99.16
cd07485	273	Peptidases_S8_Fervidolysin_like Peptidase S8 famil	99.14
cd07489	312	Peptidases_S8_5 Peptidase S8 family domain, unchar	99.12
cd04842	293	Peptidases_S8_Kp43_protease Peptidase S8 family do	99.09
cd07480	297	Peptidases_S8_12 Peptidase S8 family domain, uncha	99.08
cd07476	267	Peptidases_S8_thiazoline_oxidase_subtilisin-like_p	99.08
cd07481	264	Peptidases_S8_BacillopeptidaseF-like Peptidase S8	99.07
cd07487	264	Peptidases_S8_1 Peptidase S8 family domain, unchar	99.07
cd04843	277	Peptidases_S8_11 Peptidase S8 family domain, uncha	99.05
cd07475	346	Peptidases_S8_C5a_Peptidase Peptidase S8 family do	99.05
cd07484	260	Peptidases_S8_Thermitase_like Peptidase S8 family	99.04
cd04848	267	Peptidases_S8_Autotransporter_serine_protease_like	99.01
cd04077	255	Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8	98.98
cd07494	298	Peptidases_S8_10 Peptidase S8 family domain, uncha	98.94
PTZ00262	639	subtilisin-like protease; Provisional	98.92
cd07490	254	Peptidases_S8_6 Peptidase S8 family domain, unchar	98.89
cd07493	261	Peptidases_S8_9 Peptidase S8 family domain, unchar	98.84
KOG1153	501	consensus Subtilisin-related protease/Vacuolar pro	98.84
cd07473	259	Peptidases_S8_Subtilisin_like Peptidase S8 family	98.8
cd07496	285	Peptidases_S8_13 Peptidase S8 family domain, uncha	98.79
cd07483	291	Peptidases_S8_Subtilisin_Novo-like Peptidase S8 fa	98.76
cd04857	412	Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptid	98.76
cd07482	294	Peptidases_S8_Lantibiotic_specific_protease Peptid	98.75
cd07477	229	Peptidases_S8_Subtilisin_subset Peptidase S8 famil	98.75
cd05562	275	Peptidases_S53_like Peptidase domain in the S53 fa	98.73
cd07474	295	Peptidases_S8_subtilisin_Vpr-like Peptidase S8 fam	98.72
cd05561	239	Peptidases_S8_4 Peptidase S8 family domain, unchar	98.72
cd07498	242	Peptidases_S8_15 Peptidase S8 family domain, uncha	98.72
cd07491	247	Peptidases_S8_7 Peptidase S8 family domain, unchar	98.7
cd04847	291	Peptidases_S8_Subtilisin_like_2 Peptidase S8 famil	98.68
cd07492	222	Peptidases_S8_8 Peptidase S8 family domain, unchar	98.37
PF00082	282	Peptidase_S8: Subtilase family This is family S8 i	98.32
cd00306	241	Peptidases_S8_S53 Peptidase domain in the S8 and S	98.15
COG1404	508	AprE Subtilisin-like serine proteases [Posttransla	97.77
KOG1114	1304	consensus Tripeptidyl peptidase II [Posttranslatio	97.73
KOG4266	1033	consensus Subtilisin kexin isozyme-1/site 1 protea	97.66
cd07488	247	Peptidases_S8_2 Peptidase S8 family domain, unchar	97.41
KOG3526	629	consensus Subtilisin-like proprotein convertase [P	87.75

>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3

Probab=99.81  E-value=3.7e-20  Score=138.95  Aligned_cols=84  Identities=39%  Similarity=0.500  Sum_probs=71.8

Q ss_pred             CCCCCCCCCCccccccCCCCCCCCCcccccCCCCeEEEEecC-------C------------------------------
Q 041208            1 MELLTTRSWDFLGMEKDNIMPPNSLWNKARFGEDVIIGNIDT-------D------------------------------   43 (89)
Q Consensus         1 ~~l~TTrSw~flgl~~~~~~~~~~~w~~~~~G~gviIgVlDT-------D------------------------------   43 (89)
                      |+|||||+|+|||++.--   ...+|.....|+||+|+||||       |                              
T Consensus         1 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (307)
T cd04852           1 YQLHTTRSPDFLGLPGAW---GGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNN   77 (307)
T ss_pred             CCccccCCHHHcCCCCCC---CcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCC
Confidence            689999999999998542   122677788999999999999       1                              


Q ss_pred             -----------------------------CCCCCcceeccccCccccccceecccCCceeeecCCCCcEEEEEc
Q 041208           44 -----------------------------FHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRKEGPLKPEWHLIEY   88 (89)
Q Consensus        44 -----------------------------~~GHGTH~a~taaG~~v~~a~~~G~~~~G~a~G~AP~aria~yKv   88 (89)
                                                   ..|||||||++++|+...+..+.| ...+.+.|+||.|+|++||+
T Consensus        78 ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~-~~~~~~~GvAP~a~l~~~kv  150 (307)
T cd04852          78 KLIGARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGG-FAFGTASGVAPRARIAVYKV  150 (307)
T ss_pred             eEEEEEEcccchhhccCcccccCCCCCccCCCCchhhhhhhcCCCcccccccc-cccccEEEECCCCeEEEEEE
Confidence                                         147999999999999988877777 77778899999999999997

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14

Probab=99.41  E-value=1.6e-13  Score=105.28  Aligned_cols=46  Identities=20%  Similarity=0.216  Sum_probs=34.6

Q ss_pred             CCCCCCcceeccccCccccccceecccCCceeeecCCCCcEEEEEc
Q 041208           43 DFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRKEGPLKPEWHLIEY   88 (89)
Q Consensus        43 D~~GHGTH~a~taaG~~v~~a~~~G~~~~G~a~G~AP~aria~yKv   88 (89)
                      |++|||||||+|++|+...+.+.++......+.|+||+|+|+++||
T Consensus        54 D~~gHGThvAGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkv   99 (311)
T cd07497          54 DFFSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKA   99 (311)
T ss_pred             CccccchhHHHHHhccCcccccccccccccceeeeCCCCEEEEEEE
Confidence            6789999999999998654433332112234789999999999997

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins

Probab=99.26  E-value=2.7e-12  Score=95.12  Aligned_cols=51  Identities=25%  Similarity=0.265  Sum_probs=44.2

Q ss_pred             cccccCCCCeEEEEecC-------------------------CCCCCCcceeccccCccccccceecccCCceeeecCCC
Q 041208           26 WNKARFGEDVIIGNIDT-------------------------DFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRKEGPLK   80 (89)
Q Consensus        26 w~~~~~G~gviIgVlDT-------------------------D~~GHGTH~a~taaG~~v~~a~~~G~~~~G~a~G~AP~   80 (89)
                      |.....|+||.|+||||                         |+.|||||||++++++..            ...|+||.
T Consensus         1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~~~~~~~~~~~~~~d~~gHGT~VAGiIa~~~~------------~~~GvAp~   68 (255)
T cd07479           1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNVKERTNWTNEKTLDDGLGHGTFVAGVIASSRE------------QCLGFAPD   68 (255)
T ss_pred             CCCCCCCCCCEEEEEeCCCCCCCcchhccccccccCCCCCCCCCCCcHHHHHHHHHccCC------------CceeECCC
Confidence            77778899999999999                         667999999999998731            14789999


Q ss_pred             CcEEEEEc
Q 041208           81 PEWHLIEY   88 (89)
Q Consensus        81 aria~yKv   88 (89)
                      |+|..||+
T Consensus        69 a~l~~~~v   76 (255)
T cd07479          69 AEIYIFRV   76 (255)
T ss_pred             CEEEEEEe
Confidence            99999997

SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem

>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins

Probab=99.19  E-value=1.1e-11  Score=99.43  Aligned_cols=37  Identities=24%  Similarity=0.297  Sum_probs=30.5

Q ss_pred             CCCCCCcceeccccCccccccceecccCCceeeecCCCCcEEEEEc
Q 041208           43 DFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRKEGPLKPEWHLIEY   88 (89)
Q Consensus        43 D~~GHGTH~a~taaG~~v~~a~~~G~~~~G~a~G~AP~aria~yKv   88 (89)
                      |++|||||||+|+||+...         .....|+||.|+|+++|+
T Consensus        76 D~~GHGThvAGIiag~~~~---------~~~~~GvAp~a~l~~vk~  112 (455)
T cd07478          76 DENGHGTHVAGIAAGNGDN---------NPDFKGVAPEAELIVVKL  112 (455)
T ss_pred             CCCCchHHHHHHHhcCCCC---------CCCccccCCCCcEEEEEe
Confidence            6689999999999999532         123578999999999997

GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure

>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases

Probab=99.16  E-value=2.5e-11  Score=89.76  Aligned_cols=57  Identities=16%  Similarity=0.167  Sum_probs=46.8

Q ss_pred             CCCcccccCCCCeEEEEecC---------------------------------CCCCCCcceeccccCccccccceeccc
Q 041208           23 NSLWNKARFGEDVIIGNIDT---------------------------------DFHGHGTHTLSTVGGSFVKNVSAFGNV   69 (89)
Q Consensus        23 ~~~w~~~~~G~gviIgVlDT---------------------------------D~~GHGTH~a~taaG~~v~~a~~~G~~   69 (89)
                      ..+|.....|+||+|+||||                                 |..|||||||++++|+....       
T Consensus        29 ~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gHGT~vAgiiag~~~~~-------  101 (297)
T cd04059          29 TPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDPEASYDFNDNDPDPTPRYDDDNSHGTRCAGEIAAVGNNG-------  101 (297)
T ss_pred             HHHHhCCCCCcceEEEEEeCCcccCCHhHhhcccccccccccCCCCCCCCccccccccCcceeeEEEeecCCC-------
Confidence            46898888899999999999                                 33599999999999884211       


Q ss_pred             CCceeeecCCCCcEEEEEc
Q 041208           70 GDGQRKEGPLKPEWHLIEY   88 (89)
Q Consensus        70 ~~G~a~G~AP~aria~yKv   88 (89)
                       . ...|+||+|+|+.+|+
T Consensus       102 -~-~~~GvAp~a~l~~~~~  118 (297)
T cd04059         102 -I-CGVGVAPGAKLGGIRM  118 (297)
T ss_pred             -c-ccccccccceEeEEEe
Confidence             1 2478999999999997

Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.

>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin

Probab=99.14  E-value=3e-11  Score=89.26  Aligned_cols=61  Identities=21%  Similarity=0.226  Sum_probs=47.0

Q ss_pred             CcccccCCCCeEEEEecC---------------------------------------CCCCCCcceeccccCccccccce
Q 041208           25 LWNKARFGEDVIIGNIDT---------------------------------------DFHGHGTHTLSTVGGSFVKNVSA   65 (89)
Q Consensus        25 ~w~~~~~G~gviIgVlDT---------------------------------------D~~GHGTH~a~taaG~~v~~a~~   65 (89)
                      +|.....|+||+|+||||                                       |..|||||||++++++......+
T Consensus         2 aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gHGT~VAgiia~~~~~~~~~   81 (273)
T cd07485           2 AWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDGDGYDPAVNGYNFVPNVGDIDNDVSVGGGHGTHVAGTIAAVNNNGGGV   81 (273)
T ss_pred             ccccccCCCCcEEEEEeCCCCCCChhhccCCCCCCcccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHcccCCCcce
Confidence            688888899999999999                                       34689999999999875321111


Q ss_pred             ecccCCceeeecCCCCcEEEEEc
Q 041208           66 FGNVGDGQRKEGPLKPEWHLIEY   88 (89)
Q Consensus        66 ~G~~~~G~a~G~AP~aria~yKv   88 (89)
                      -| ++  .+.|+||.++|.++|+
T Consensus        82 g~-i~--~~~gvap~a~l~~~~v  101 (273)
T cd07485          82 GG-IA--GAGGVAPGVKIMSIQI  101 (273)
T ss_pred             ec-cc--cccccCCCCEEEEEEE
Confidence            12 22  3567999999999996

Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev

>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5

Probab=99.12  E-value=3.2e-11  Score=90.60  Aligned_cols=55  Identities=22%  Similarity=0.306  Sum_probs=46.4

Q ss_pred             CCcccccCCCCeEEEEecC-------------------------------------------CCCCCCcceeccccCccc
Q 041208           24 SLWNKARFGEDVIIGNIDT-------------------------------------------DFHGHGTHTLSTVGGSFV   60 (89)
Q Consensus        24 ~~w~~~~~G~gviIgVlDT-------------------------------------------D~~GHGTH~a~taaG~~v   60 (89)
                      .+|.....|+||.|+||||                                           |.+|||||||++++++..
T Consensus         4 ~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgiia~~~~   83 (312)
T cd07489           4 KLHAEGITGKGVKVAVVDTGIDYTHPALGGCFGPGCKVAGGYDFVGDDYDGTNPPVPDDDPMDCQGHGTHVAGIIAANPN   83 (312)
T ss_pred             hHHhCCCCCCCCEEEEEECCCCCCChhhhcCCCCCceeccccccCCcccccccCCCCCCCCCCCCCcHHHHHHHHhcCCC
Confidence            5788888899999999999                                           246899999999999853


Q ss_pred             cccceecccCCceeeecCCCCcEEEEEc
Q 041208           61 KNVSAFGNVGDGQRKEGPLKPEWHLIEY   88 (89)
Q Consensus        61 ~~a~~~G~~~~G~a~G~AP~aria~yKv   88 (89)
                      .    .+      ..|+||.|+|.+||+
T Consensus        84 ~----~~------~~GiAp~a~i~~~~v  101 (312)
T cd07489          84 A----YG------FTGVAPEATLGAYRV  101 (312)
T ss_pred             C----Cc------eEEECCCCEEEEEEe
Confidence            2    12      578999999999997

gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases

Probab=99.09  E-value=9.1e-11  Score=86.30  Aligned_cols=53  Identities=28%  Similarity=0.323  Sum_probs=42.0

Q ss_pred             cCCCCeEEEEecC-----------------------------------CCCCCCcceeccccCccccccceecccCCcee
Q 041208           30 RFGEDVIIGNIDT-----------------------------------DFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQR   74 (89)
Q Consensus        30 ~~G~gviIgVlDT-----------------------------------D~~GHGTH~a~taaG~~v~~a~~~G~~~~G~a   74 (89)
                      ..|+||.|+||||                                   |..+||||||++++++......      ....
T Consensus         4 ~tG~gv~VaviDtGi~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~HGT~vAgiia~~~~~~~~------~~~~   77 (293)
T cd04842           4 LTGKGQIVGVADTGLDTNHCFFYDPNFNKTNLFHRKIVRYDSLSDTKDDVDGHGTHVAGIIAGKGNDSSS------ISLY   77 (293)
T ss_pred             cCCcCCEEEEEecCCCCCCCcccCCCcCcCccCcccEEEeeccCCCCCCCCCCcchhheeeccCCcCCCc------cccc
Confidence            3599999999999                                   3488999999999998543221      1135


Q ss_pred             eecCCCCcEEEEEc
Q 041208           75 KEGPLKPEWHLIEY   88 (89)
Q Consensus        75 ~G~AP~aria~yKv   88 (89)
                      .|+||+|+|.+||+
T Consensus        78 ~GvAp~a~i~~~~~   91 (293)
T cd04842          78 KGVAPKAKLYFQDI   91 (293)
T ss_pred             ccccccCeEEEEEe
Confidence            78999999999996

Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases

>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12

Probab=99.08  E-value=6.1e-11  Score=88.88  Aligned_cols=49  Identities=39%  Similarity=0.403  Sum_probs=41.6

Q ss_pred             cCCCCeEEEEecC--------------------------CCCCCCcceeccccCccccccceecccCCceeeecCCCCcE
Q 041208           30 RFGEDVIIGNIDT--------------------------DFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRKEGPLKPEW   83 (89)
Q Consensus        30 ~~G~gviIgVlDT--------------------------D~~GHGTH~a~taaG~~v~~a~~~G~~~~G~a~G~AP~ari   83 (89)
                      ..|+||+|+||||                          |.+|||||||++++|+...          +...|+||.|+|
T Consensus         5 ~tG~gv~VaVlDsGv~~~hp~l~~~~~~~~~~~~~~~~~d~~gHGT~VAgiiag~~~~----------~~~~GvAp~a~i   74 (297)
T cd07480           5 FTGAGVRVAVLDTGIDLTHPAFAGRDITTKSFVGGEDVQDGHGHGTHCAGTIFGRDVP----------GPRYGVARGAEI   74 (297)
T ss_pred             CCCCCCEEEEEcCCCCCCChhhcCCcccCcccCCCCCCCCCCCcHHHHHHHHhcccCC----------CcccccCCCCEE
Confidence            3599999999999                          7889999999999998543          223689999999


Q ss_pred             EEEEc
Q 041208           84 HLIEY   88 (89)
Q Consensus        84 a~yKv   88 (89)
                      ..+|+
T Consensus        75 ~~~~~   79 (297)
T cd07480          75 ALIGK   79 (297)
T ss_pred             EEEEE
Confidence            99986

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases

Probab=99.08  E-value=7.5e-11  Score=88.33  Aligned_cols=53  Identities=19%  Similarity=0.063  Sum_probs=45.5

Q ss_pred             CcccccCCCCeEEEEecC----------------------------CCCCCCcceeccccCccccccceecccCCceeee
Q 041208           25 LWNKARFGEDVIIGNIDT----------------------------DFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRKE   76 (89)
Q Consensus        25 ~w~~~~~G~gviIgVlDT----------------------------D~~GHGTH~a~taaG~~v~~a~~~G~~~~G~a~G   76 (89)
                      +|.....|++|.|+|||+                            |..|||||||++++|+.-          . ...|
T Consensus         2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~~~~~~~~~~~~~~~gHGT~VAgii~g~~~----------~-~~~G   70 (267)
T cd07476           2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPLFTYAAAACQDGGASAHGTHVASLIFGQPC----------S-SVEG   70 (267)
T ss_pred             ceeccCCCCCeEEEEeCCCcCCCChhhCCCccccccCccccCCCCCCCCCcHHHHHHHHhcCCC----------C-Ccee
Confidence            688888899999999999                            568999999999998741          1 2578


Q ss_pred             cCCCCcEEEEEc
Q 041208           77 GPLKPEWHLIEY   88 (89)
Q Consensus        77 ~AP~aria~yKv   88 (89)
                      +||.|+|.++|+
T Consensus        71 vAp~a~i~~~~v   82 (267)
T cd07476          71 IAPLCRGLNIPI   82 (267)
T ss_pred             ECcCCeEEEEEE
Confidence            999999999986

Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).

>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins

Probab=99.07  E-value=1.2e-10  Score=85.68  Aligned_cols=36  Identities=33%  Similarity=0.426  Sum_probs=28.3

Q ss_pred             CCCCCCcceeccccCccccccceecccCCceeeecCCCCcEEEEEc
Q 041208           43 DFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRKEGPLKPEWHLIEY   88 (89)
Q Consensus        43 D~~GHGTH~a~taaG~~v~~a~~~G~~~~G~a~G~AP~aria~yKv   88 (89)
                      |+.+|||||+++++|....          +...|+||+|+|.++|+
T Consensus        50 d~~~HGT~vagii~g~~~~----------~~~~GvAp~a~i~~~~~   85 (264)
T cd07481          50 DDNGHGTHTMGTMVGNDGD----------GQQIGVAPGARWIACRA   85 (264)
T ss_pred             CCCCchhhhhhheeecCCC----------CCceEECCCCeEEEEEe
Confidence            3568999999999987321          11278999999999986

Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.

>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1

Probab=99.07  E-value=1.1e-10  Score=84.40  Aligned_cols=49  Identities=27%  Similarity=0.389  Sum_probs=40.8

Q ss_pred             CCCeEEEEecC------------------------------CCCCCCcceeccccCccccccceecccCCceeeecCCCC
Q 041208           32 GEDVIIGNIDT------------------------------DFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRKEGPLKP   81 (89)
Q Consensus        32 G~gviIgVlDT------------------------------D~~GHGTH~a~taaG~~v~~a~~~G~~~~G~a~G~AP~a   81 (89)
                      |+||.|+||||                              |..|||||||++++|.....        .+...|+||+|
T Consensus         1 G~gv~VaviDsGv~~~h~~l~~~~~~~~~~~~~~~~~~~~~d~~~HGT~vAgiiag~~~~~--------~~~~~Giap~a   72 (264)
T cd07487           1 GKGITVAVLDTGIDAPHPDFDGRIIRFADFVNTVNGRTTPYDDNGHGTHVAGIIAGSGRAS--------NGKYKGVAPGA   72 (264)
T ss_pred             CCCcEEEEEeCCCCCCCccccccccccccccccccCCCCCCCCCCchHHHHHHHhcCCccc--------CCceEEECCCC
Confidence            78999999999                              67799999999999985321        22358899999


Q ss_pred             cEEEEEc
Q 041208           82 EWHLIEY   88 (89)
Q Consensus        82 ria~yKv   88 (89)
                      +|.++|+
T Consensus        73 ~i~~~~v   79 (264)
T cd07487          73 NLVGVKV   79 (264)
T ss_pred             eEEEEEe
Confidence            9999997

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11

Probab=99.05  E-value=1.7e-10  Score=87.02  Aligned_cols=55  Identities=20%  Similarity=0.222  Sum_probs=44.6

Q ss_pred             CCccccc-CCCCeEEEEecC-----------------------CCCCCCcceeccccCccccccceecccCCceeeecCC
Q 041208           24 SLWNKAR-FGEDVIIGNIDT-----------------------DFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRKEGPL   79 (89)
Q Consensus        24 ~~w~~~~-~G~gviIgVlDT-----------------------D~~GHGTH~a~taaG~~v~~a~~~G~~~~G~a~G~AP   79 (89)
                      ..|.... .|++|.|+|||+                       |+++||||||+++++..         ...| ..|+||
T Consensus         6 ~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~~~~~~~~~d~~gHGT~VAGiIaa~~---------n~~G-~~GvAp   75 (277)
T cd04843           6 YAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGITLISGLTDQADSDHGTAVLGIIVAKD---------NGIG-VTGIAH   75 (277)
T ss_pred             HHHHhcCCCCCcEEEEEecCCCCCCChhhccccccccCCCCCCCCCCCcchhheeeeeec---------CCCc-eeeecc
Confidence            5787754 479999999999                       67799999999999862         1122 479999


Q ss_pred             CCcEEEEEc
Q 041208           80 KPEWHLIEY   88 (89)
Q Consensus        80 ~aria~yKv   88 (89)
                      +++|.++|+
T Consensus        76 ~a~l~~i~v   84 (277)
T cd04843          76 GAQAAVVSS   84 (277)
T ss_pred             CCEEEEEEe
Confidence            999999997

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases

Probab=99.05  E-value=1.1e-10  Score=88.26  Aligned_cols=37  Identities=16%  Similarity=0.136  Sum_probs=29.1

Q ss_pred             CCCcceeccccCccccccceecccCCceeeecCCCCcEEEEEc
Q 041208           46 GHGTHTLSTVGGSFVKNVSAFGNVGDGQRKEGPLKPEWHLIEY   88 (89)
Q Consensus        46 GHGTH~a~taaG~~v~~a~~~G~~~~G~a~G~AP~aria~yKv   88 (89)
                      +||||||++++|+.....      ......|+||+|+|..+|+
T Consensus        83 ~HGT~vagiiag~~~~~~------~~~~~~GiAp~a~l~~~~v  119 (346)
T cd07475          83 SHGMHVAGIVAGNGDEED------NGEGIKGVAPEAQLLAMKV  119 (346)
T ss_pred             CcHHHHHHHHhcCCCccc------cCCceEEeCCCCeEEEEEe
Confidence            899999999999864311      1233689999999999987

Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr

>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins

Probab=99.04  E-value=1.3e-10  Score=84.66  Aligned_cols=67  Identities=21%  Similarity=0.357  Sum_probs=51.3

Q ss_pred             CCCCCccccccCCCCCCCCCcccccCCCCeEEEEecC----------------------------CCCCCCcceeccccC
Q 041208            6 TRSWDFLGMEKDNIMPPNSLWNKARFGEDVIIGNIDT----------------------------DFHGHGTHTLSTVGG   57 (89)
Q Consensus         6 TrSw~flgl~~~~~~~~~~~w~~~~~G~gviIgVlDT----------------------------D~~GHGTH~a~taaG   57 (89)
                      ++-|.+-.+..      ...|... .|++|.|+||||                            |+.|||||||+++++
T Consensus         8 ~~~w~~~~~~~------~~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~~~~~~~~~~~~~~~~~d~~~HGT~vagii~~   80 (260)
T cd07484           8 SYQWNLDQIGA------PKAWDIT-GGSGVTVAVVDTGVDPTHPDLLKVKFVLGYDFVDNDSDAMDDNGHGTHVAGIIAA   80 (260)
T ss_pred             ccCCCccccCh------HHHHhhc-CCCCCEEEEEeCCCCCCCcccccCCcccceeccCCCCCCCCCCCcHHHHHHHHhC
Confidence            35665544442      3578877 799999999999                            678999999999998


Q ss_pred             ccccccceecccCCceeeecCCCCcEEEEEc
Q 041208           58 SFVKNVSAFGNVGDGQRKEGPLKPEWHLIEY   88 (89)
Q Consensus        58 ~~v~~a~~~G~~~~G~a~G~AP~aria~yKv   88 (89)
                      ....        . ....|+||.|+|..||+
T Consensus        81 ~~~~--------~-~~~~Giap~a~l~~~~v  102 (260)
T cd07484          81 ATNN--------G-TGVAGVAPKAKIMPVKV  102 (260)
T ss_pred             ccCC--------C-CceEeECCCCEEEEEEE
Confidence            7422        1 12478999999999986

Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid

>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases

Probab=99.01  E-value=1.7e-10  Score=82.56  Aligned_cols=47  Identities=23%  Similarity=0.256  Sum_probs=40.5

Q ss_pred             CCCeEEEEecC-------------------------------CCCCCCcceeccccCccccccceecccCCceeeecCCC
Q 041208           32 GEDVIIGNIDT-------------------------------DFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRKEGPLK   80 (89)
Q Consensus        32 G~gviIgVlDT-------------------------------D~~GHGTH~a~taaG~~v~~a~~~G~~~~G~a~G~AP~   80 (89)
                      |+|+.|+|||+                               |.++||||||++++|+...          ....|+||.
T Consensus         2 G~gv~VaiiDsG~~~~h~~l~~~~~~~~~~~~~~~~~~~~~~~~~~HGT~vagiiag~~~~----------~~~~GiAp~   71 (267)
T cd04848           2 GAGVKVGVIDSGIDLSHPEFAGRVSEASYYVAVNDAGYASNGDGDSHGTHVAGVIAAARDG----------GGMHGVAPD   71 (267)
T ss_pred             CCceEEEEEeCCCCCCCccccCcccccccccccccccCCCCCCCCChHHHHHHHHhcCcCC----------CCcccCCcC
Confidence            89999999999                               4789999999999998532          335789999


Q ss_pred             CcEEEEEc
Q 041208           81 PEWHLIEY   88 (89)
Q Consensus        81 aria~yKv   88 (89)
                      |+|..+|+
T Consensus        72 a~i~~~~~   79 (267)
T cd04848          72 ATLYSARA   79 (267)
T ss_pred             CEEEEEec
Confidence            99999997

Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.

>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins

Probab=98.98  E-value=2.5e-10  Score=83.16  Aligned_cols=49  Identities=31%  Similarity=0.409  Sum_probs=42.4

Q ss_pred             CcccccCCCCeEEEEecC--------------------------CCCCCCcceeccccCccccccceecccCCceeeecC
Q 041208           25 LWNKARFGEDVIIGNIDT--------------------------DFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRKEGP   78 (89)
Q Consensus        25 ~w~~~~~G~gviIgVlDT--------------------------D~~GHGTH~a~taaG~~v~~a~~~G~~~~G~a~G~A   78 (89)
                      +|.....|+||.|+||||                          |.++||||||++++++.               .|+|
T Consensus        17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~~~~~~~~~~~~~~~d~~~HGT~vAgiia~~~---------------~GvA   81 (255)
T cd04077          17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGRAIWGADFVGGDPDSDCNGHGTHVAGTVGGKT---------------YGVA   81 (255)
T ss_pred             eEecCCCCCCcEEEEEcCCCCCCChhhhCCeeeeeecCCCCCCCCCCccHHHHHHHHHccc---------------cCcC
Confidence            556667899999999999                          66799999999999762               3689


Q ss_pred             CCCcEEEEEc
Q 041208           79 LKPEWHLIEY   88 (89)
Q Consensus        79 P~aria~yKv   88 (89)
                      |.|+|.++|+
T Consensus        82 p~a~i~~~~i   91 (255)
T cd04077          82 KKANLVAVKV   91 (255)
T ss_pred             CCCeEEEEEE
Confidence            9999999996

The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti

>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10

Probab=98.94  E-value=7.1e-10  Score=84.32  Aligned_cols=47  Identities=19%  Similarity=0.231  Sum_probs=40.6

Q ss_pred             CCCcccccCCCCeEEEEecC----------------------------CCCCCCcceeccccCccccccceecccCCcee
Q 041208           23 NSLWNKARFGEDVIIGNIDT----------------------------DFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQR   74 (89)
Q Consensus        23 ~~~w~~~~~G~gviIgVlDT----------------------------D~~GHGTH~a~taaG~~v~~a~~~G~~~~G~a   74 (89)
                      ..+|.....|+||.|+||||                            |++||||||+++                   .
T Consensus        11 ~~~~~~G~~G~Gv~VaViDTGv~~~h~~~~~~~~~~~~~~~~~~~~~~D~~gHGT~vag~-------------------i   71 (298)
T cd07494          11 TRVHQRGITGRGVRVAMVDTGFYAHPFFESRGYQVRVVLAPGATDPACDENGHGTGESAN-------------------L   71 (298)
T ss_pred             hHHHhcCCCCCCcEEEEEeCCCcCCchhhcCCccceeecCCCCCCCCCCCCCcchheeec-------------------e
Confidence            46888888999999999999                            677999999753                   2


Q ss_pred             eecCCCCcEEEEEc
Q 041208           75 KEGPLKPEWHLIEY   88 (89)
Q Consensus        75 ~G~AP~aria~yKv   88 (89)
                      .|+||+|+|.+||+
T Consensus        72 ~GvAP~a~i~~vkv   85 (298)
T cd07494          72 FAIAPGAQFIGVKL   85 (298)
T ss_pred             eEeCCCCeEEEEEc
Confidence            36999999999997

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>PTZ00262 subtilisin-like protease; Provisional

Probab=98.92  E-value=5.4e-10  Score=93.89  Aligned_cols=36  Identities=14%  Similarity=0.016  Sum_probs=28.7

Q ss_pred             CCCCCcceeccccCccccccceecccCCceeeecCCCCcEEEEEc
Q 041208           44 FHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRKEGPLKPEWHLIEY   88 (89)
Q Consensus        44 ~~GHGTH~a~taaG~~v~~a~~~G~~~~G~a~G~AP~aria~yKv   88 (89)
                      ++|||||||+|+|+....        ..| ..|+||+|+|+++|+
T Consensus       377 ~~GHGTHVAGIIAA~gnN--------~~G-i~GVAP~AkLi~vKV  412 (639)
T PTZ00262        377 DNYHGTHVSGIISAIGNN--------NIG-IVGVDKRSKLIICKA  412 (639)
T ss_pred             CCCcchHHHHHHhccccC--------CCc-eeeeecccccceEEE
Confidence            468999999999987421        122 578999999999997

>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6

Probab=98.89  E-value=1.1e-09  Score=79.31  Aligned_cols=36  Identities=28%  Similarity=0.298  Sum_probs=30.1

Q ss_pred             CCCCCCcceeccccCccccccceecccCCceeeecCCCCcEEEEEc
Q 041208           43 DFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRKEGPLKPEWHLIEY   88 (89)
Q Consensus        43 D~~GHGTH~a~taaG~~v~~a~~~G~~~~G~a~G~AP~aria~yKv   88 (89)
                      |..+||||||++++++..          ++...|+||.++|..+|+
T Consensus        41 d~~~HGT~vAgiia~~~~----------~~~~~GvAp~a~i~~~~v   76 (254)
T cd07490          41 DAGGHGTHVSGTIGGGGA----------KGVYIGVAPEADLLHGKV   76 (254)
T ss_pred             CCCCcHHHHHHHHhcCCC----------CCCEEEECCCCEEEEEEE
Confidence            678999999999999853          223468999999999997

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9

Probab=98.84  E-value=2.9e-09  Score=78.08  Aligned_cols=36  Identities=25%  Similarity=0.211  Sum_probs=29.8

Q ss_pred             CCCCCCCcceeccccCccccccceecccCCceeeecCCCCcEEEEEc
Q 041208           42 TDFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRKEGPLKPEWHLIEY   88 (89)
Q Consensus        42 TD~~GHGTH~a~taaG~~v~~a~~~G~~~~G~a~G~AP~aria~yKv   88 (89)
                      .|.+|||||||++++++..           +...|+||.|+|..+|+
T Consensus        44 ~~~~~HGT~vagiia~~~~-----------~~~~GvAp~a~l~~~~~   79 (261)
T cd07493          44 YTDDDHGTAVLSTMAGYTP-----------GVMVGTAPNASYYLART   79 (261)
T ss_pred             CCCCCchhhhheeeeeCCC-----------CCEEEeCCCCEEEEEEe
Confidence            3778999999999998731           22578999999999985

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]

Probab=98.84  E-value=2.5e-09  Score=87.29  Aligned_cols=50  Identities=22%  Similarity=0.264  Sum_probs=44.0

Q ss_pred             CCcccccCCCCeEEEEecC--------------------------CCCCCCcceeccccCccccccceecccCCceeeec
Q 041208           24 SLWNKARFGEDVIIGNIDT--------------------------DFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRKEG   77 (89)
Q Consensus        24 ~~w~~~~~G~gviIgVlDT--------------------------D~~GHGTH~a~taaG~~v~~a~~~G~~~~G~a~G~   77 (89)
                      .+.++..+|+||..||+||                          |++|||||||++++|+.               .|+
T Consensus       210 ~Y~Y~~~aG~gvtaYv~DTGVni~H~dFegRa~wGa~i~~~~~~~D~nGHGTH~AG~I~sKt---------------~Gv  274 (501)
T KOG1153|consen  210 NYVYEIDAGKGVTAYVLDTGVNIEHPDFEGRAIWGATIPPKDGDEDCNGHGTHVAGLIGSKT---------------FGV  274 (501)
T ss_pred             eEEeecccCCCeEEEEecccccccccccccceecccccCCCCcccccCCCcceeeeeeeccc---------------ccc
Confidence            3556677999999999999                          99999999999999984               347


Q ss_pred             CCCCcEEEEEc
Q 041208           78 PLKPEWHLIEY   88 (89)
Q Consensus        78 AP~aria~yKv   88 (89)
                      |-+++|.+.||
T Consensus       275 AK~s~lvaVKV  285 (501)
T KOG1153|consen  275 AKNSNLVAVKV  285 (501)
T ss_pred             ccccceEEEEE
Confidence            88999999998

>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins

Probab=98.80  E-value=2.9e-09  Score=77.26  Aligned_cols=37  Identities=19%  Similarity=0.198  Sum_probs=29.8

Q ss_pred             CCCCCCcceeccccCccccccceecccCCceeeecCCCCcEEEEEc
Q 041208           43 DFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRKEGPLKPEWHLIEY   88 (89)
Q Consensus        43 D~~GHGTH~a~taaG~~v~~a~~~G~~~~G~a~G~AP~aria~yKv   88 (89)
                      |..|||||||++++|+...+         ....|+||+|+|..+|+
T Consensus        61 d~~~HGT~va~ii~~~~~~~---------~~~~GvAp~a~l~~~~~   97 (259)
T cd07473          61 DDNGHGTHVAGIIGAVGNNG---------IGIAGVAWNVKIMPLKF   97 (259)
T ss_pred             CCCCcHHHHHHHHHCcCCCC---------CceEEeCCCCEEEEEEE
Confidence            66799999999999875321         12478999999999997

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13

Probab=98.79  E-value=3e-09  Score=79.04  Aligned_cols=37  Identities=19%  Similarity=0.128  Sum_probs=29.9

Q ss_pred             CCCCCCcceeccccCccccccceecccCCceeeecCCCCcEEEEEc
Q 041208           43 DFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRKEGPLKPEWHLIEY   88 (89)
Q Consensus        43 D~~GHGTH~a~taaG~~v~~a~~~G~~~~G~a~G~AP~aria~yKv   88 (89)
                      |..+||||||+++++....        ..+ ..|+||.|+|..||+
T Consensus        69 ~~~~HGT~vAgiiaa~~~~--------~~~-~~GvAp~a~i~~~~v  105 (285)
T cd07496          69 PSSWHGTHVAGTIAAVTNN--------GVG-VAGVAWGARILPVRV  105 (285)
T ss_pred             CCCCCHHHHHHHHhCcCCC--------CCC-ceeecCCCeEEEEEE
Confidence            6678999999999998531        112 368999999999997

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins

Probab=98.76  E-value=4.6e-09  Score=79.07  Aligned_cols=37  Identities=16%  Similarity=0.091  Sum_probs=30.2

Q ss_pred             CCCCCCcceeccccCccccccceecccCCceeeecCCCCcEEEEEc
Q 041208           43 DFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRKEGPLKPEWHLIEY   88 (89)
Q Consensus        43 D~~GHGTH~a~taaG~~v~~a~~~G~~~~G~a~G~AP~aria~yKv   88 (89)
                      |..|||||||+++++....        ..| ..|+||.++|+.+|+
T Consensus        83 ~~~gHGT~VAGiIaa~~~n--------~~g-~~GvAp~a~i~~~k~  119 (291)
T cd07483          83 SDADHGTHVAGIIAAVRDN--------GIG-IDGVADNVKIMPLRI  119 (291)
T ss_pred             CCCCcHHHHHHHHhCcCCC--------CCc-eEEECCCCEEEEEEE
Confidence            6789999999999987422        122 578999999999997

Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat

>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II

Probab=98.76  E-value=4.4e-09  Score=84.48  Aligned_cols=37  Identities=22%  Similarity=0.269  Sum_probs=30.7

Q ss_pred             CCCCCCcceeccccCccccccceecccCCceeeecCCCCcEEEEEc
Q 041208           43 DFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRKEGPLKPEWHLIEY   88 (89)
Q Consensus        43 D~~GHGTH~a~taaG~~v~~a~~~G~~~~G~a~G~AP~aria~yKv   88 (89)
                      |+.|||||||+|++|+...         .....|+||+|+|+.+|+
T Consensus       183 d~~gHGThVAGIIAg~~~~---------~~~~~GVAP~A~I~svkv  219 (412)
T cd04857         183 DSGAHGTHVAGIAAAHFPE---------EPERNGVAPGAQIVSIKI  219 (412)
T ss_pred             CCCCCHHHHHHHHhCCCCC---------CCceEEecCCCeEEEEEe
Confidence            8889999999999998422         123578999999999997

Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.

>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases

Probab=98.75  E-value=5.2e-09  Score=76.88  Aligned_cols=33  Identities=18%  Similarity=0.004  Sum_probs=27.4

Q ss_pred             CCCCCCcceeccccCccccccceecccCCceeeecCCCCcEEEEEc
Q 041208           43 DFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRKEGPLKPEWHLIEY   88 (89)
Q Consensus        43 D~~GHGTH~a~taaG~~v~~a~~~G~~~~G~a~G~AP~aria~yKv   88 (89)
                      |..|||||||++++++..             ..|+||+|+|.+||+
T Consensus        51 d~~gHGT~vAgiia~~~~-------------~~GvAp~a~i~~~~v   83 (294)
T cd07482          51 DKLGHGTAVAGQIAANGN-------------IKGVAPGIGIVSYRV   83 (294)
T ss_pred             CCCCcHhHHHHHHhcCCC-------------CceeCCCCEEEEEEe
Confidence            568999999999998621             128999999999997

Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h

>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins

Probab=98.75  E-value=6.1e-09  Score=74.02  Aligned_cols=36  Identities=17%  Similarity=0.109  Sum_probs=29.7

Q ss_pred             CCCCCCcceeccccCccccccceecccCCceeeecCCCCcEEEEEc
Q 041208           43 DFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRKEGPLKPEWHLIEY   88 (89)
Q Consensus        43 D~~GHGTH~a~taaG~~v~~a~~~G~~~~G~a~G~AP~aria~yKv   88 (89)
                      |..+||||||+++++.....          ...|+||.|+|..+|+
T Consensus        38 ~~~~HGT~vA~ii~~~~~~~----------~~~giap~a~i~~~~~   73 (229)
T cd07477          38 DGNGHGTHVAGIIAALDNGV----------GVVGVAPEADLYAVKV   73 (229)
T ss_pred             CCCCCHHHHHHHHhcccCCC----------ccEeeCCCCEEEEEEE
Confidence            67799999999999975321          2478999999999986

This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug

>cd05562 Peptidases_S53_like Peptidase domain in the S53 family

Probab=98.73  E-value=4.6e-09  Score=79.24  Aligned_cols=39  Identities=18%  Similarity=0.133  Sum_probs=33.2

Q ss_pred             CCCCeEEEEecC-------------------------------CCCCCCcceeccccCccccccceecccCCceeeecCC
Q 041208           31 FGEDVIIGNIDT-------------------------------DFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRKEGPL   79 (89)
Q Consensus        31 ~G~gviIgVlDT-------------------------------D~~GHGTH~a~taaG~~v~~a~~~G~~~~G~a~G~AP   79 (89)
                      .|+||+|+||||                               |.+|||||||++++                   |+||
T Consensus         3 tG~gv~vaviDtGvd~~~~~~~~~~~~~l~~~~~~~~~~~~~~d~~gHGT~vAgii~-------------------GvAP   63 (275)
T cd05562           3 DGTGIKIGVISDGFDGLGDAADDQASGDLPGNVNVLGDLDGGSGGGDEGRAMLEIIH-------------------DIAP   63 (275)
T ss_pred             CCCceEEEEEeCCccccccccccccCCCCCcceeeccccCCCCCCCchHHHHHHHHh-------------------ccCC
Confidence            488999999998                               45699999998873                   5899


Q ss_pred             CCcEEEEEc
Q 041208           80 KPEWHLIEY   88 (89)
Q Consensus        80 ~aria~yKv   88 (89)
                      .|+|+.+|+
T Consensus        64 ~a~l~~~~~   72 (275)
T cd05562          64 GAELAFHTA   72 (275)
T ss_pred             CCEEEEEec
Confidence            999999885

Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi

>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins

Probab=98.72  E-value=7.5e-09  Score=76.39  Aligned_cols=36  Identities=28%  Similarity=0.314  Sum_probs=29.4

Q ss_pred             CCCCCcceeccccCccccccceecccCCceeeecCCCCcEEEEEc
Q 041208           44 FHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRKEGPLKPEWHLIEY   88 (89)
Q Consensus        44 ~~GHGTH~a~taaG~~v~~a~~~G~~~~G~a~G~AP~aria~yKv   88 (89)
                      ..+||||||++++|....         ...+.|+||+|+|..+|+
T Consensus        61 ~~~HGT~vAgiiag~~~n---------~~~~~Giap~a~i~~~~~   96 (295)
T cd07474          61 ATGHGTHVAGIIAGNGVN---------VGTIKGVAPKADLYAYKV   96 (295)
T ss_pred             CCCcHHHHHHHHhcCCCc---------cCceEeECCCCeEEEEEe
Confidence            679999999999988532         123578999999999987

The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4

Probab=98.72  E-value=6.2e-09  Score=76.42  Aligned_cols=34  Identities=15%  Similarity=0.015  Sum_probs=28.8

Q ss_pred             CCCCCCcceeccccCccccccceecccCCceeeecCCCCcEEEEEc
Q 041208           43 DFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRKEGPLKPEWHLIEY   88 (89)
Q Consensus        43 D~~GHGTH~a~taaG~~v~~a~~~G~~~~G~a~G~AP~aria~yKv   88 (89)
                      |..+||||||++++++...         .   .|+||.|+|+.+|+
T Consensus        34 ~~~~HGT~vAgiia~~~~~---------~---~Gvap~a~i~~~~v   67 (239)
T cd05561          34 APSAHGTAVASLLAGAGAQ---------R---PGLLPGADLYGADV   67 (239)
T ss_pred             CCCCCHHHHHHHHhCCCCC---------C---cccCCCCEEEEEEE
Confidence            6889999999999988421         1   68999999999987

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15

Probab=98.72  E-value=6.1e-09  Score=75.05  Aligned_cols=37  Identities=14%  Similarity=0.044  Sum_probs=30.1

Q ss_pred             CCCCCCcceeccccCccccccceecccCCceeeecCCCCcEEEEEc
Q 041208           43 DFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRKEGPLKPEWHLIEY   88 (89)
Q Consensus        43 D~~GHGTH~a~taaG~~v~~a~~~G~~~~G~a~G~AP~aria~yKv   88 (89)
                      |..|||||||++++|+...+         ....|+||.|+|..+|+
T Consensus        38 ~~~~HGT~vAgiiag~~~~~---------~~~~Gvap~a~i~~~~~   74 (242)
T cd07498          38 DIDGHGTACAGVAAAVGNNG---------LGVAGVAPGAKLMPVRI   74 (242)
T ss_pred             CCCCCHHHHHHHHHhccCCC---------ceeEeECCCCEEEEEEE
Confidence            78899999999999875211         12578999999999986

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7

Probab=98.70  E-value=6.3e-09  Score=77.31  Aligned_cols=27  Identities=19%  Similarity=0.177  Sum_probs=23.1

Q ss_pred             CCCCCCcceeccccCccccccceecccCCceeeecCCCCcEEEEEc
Q 041208           43 DFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRKEGPLKPEWHLIEY   88 (89)
Q Consensus        43 D~~GHGTH~a~taaG~~v~~a~~~G~~~~G~a~G~AP~aria~yKv   88 (89)
                      |.+|||||||++++                   |+||.++|+++||
T Consensus        47 d~~gHGT~vAgiI~-------------------gvap~a~i~~~kv   73 (247)
T cd07491          47 SADGHGTAMARMIC-------------------RICPSAKLYVIKL   73 (247)
T ss_pred             CCCCcHHHHHHHHH-------------------HHCCCCeEEEEEe
Confidence            36789999999975                   3799999999997

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins

Probab=98.68  E-value=8.1e-09  Score=76.97  Aligned_cols=37  Identities=14%  Similarity=-0.107  Sum_probs=29.8

Q ss_pred             CCCCCCcceeccccCccccccceecccCCceeeecCCCCcEEEEEc
Q 041208           43 DFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRKEGPLKPEWHLIEY   88 (89)
Q Consensus        43 D~~GHGTH~a~taaG~~v~~a~~~G~~~~G~a~G~AP~aria~yKv   88 (89)
                      |++|||||||+++++....         .....|+||.++|..+||
T Consensus        36 d~~gHGT~vAgiia~~~~~---------~~~~~gvap~~~l~~~kv   72 (291)
T cd04847          36 DDLGHGTAVAGLALYGDLT---------LPGNGLPRPGCRLESVRV   72 (291)
T ss_pred             CCCCChHHHHHHHHcCccc---------CCCCCCcccceEEEEEEE
Confidence            8899999999999876432         112367999999999997

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8

Probab=98.37  E-value=1.7e-07  Score=67.00  Aligned_cols=27  Identities=26%  Similarity=0.274  Sum_probs=21.4

Q ss_pred             CCCCCCcceeccccCccccccceecccCCceeeecCCCCcEEEEEc
Q 041208           43 DFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRKEGPLKPEWHLIEY   88 (89)
Q Consensus        43 D~~GHGTH~a~taaG~~v~~a~~~G~~~~G~a~G~AP~aria~yKv   88 (89)
                      |..|||||||+++++.                   +|.++|.++|+
T Consensus        42 d~~gHGT~vAgiia~~-------------------~p~~~i~~~~v   68 (222)
T cd07492          42 DKDGHGTACAGIIKKY-------------------APEAEIGSIKI   68 (222)
T ss_pred             CCCCcHHHHHHHHHcc-------------------CCCCeEEEEEE
Confidence            7889999999998764                   36777777765

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification

Probab=98.32  E-value=1.5e-07  Score=68.26  Aligned_cols=38  Identities=21%  Similarity=0.211  Sum_probs=30.6

Q ss_pred             CCCCCCcceeccccCccccccceecccCCceeeecCCCCcEEEEEc
Q 041208           43 DFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRKEGPLKPEWHLIEY   88 (89)
Q Consensus        43 D~~GHGTH~a~taaG~~v~~a~~~G~~~~G~a~G~AP~aria~yKv   88 (89)
                      |+++|||||++++++.. . .+-.+      ..|+||.|+|..||+
T Consensus        44 ~~~~HGT~va~ii~~~~-~-~~~~~------~~Gva~~a~l~~~~i   81 (282)
T PF00082_consen   44 DDNGHGTHVAGIIAGNG-G-NNGPG------INGVAPNAKLYSYKI   81 (282)
T ss_dssp             TSSSHHHHHHHHHHHTT-S-SSSSS------ETCSSTTSEEEEEEC
T ss_pred             cCCCccchhhhhccccc-c-ccccc------ccccccccccccccc
Confidence            78899999999999996 3 22111      378999999999997

; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....

>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families

Probab=98.15  E-value=1.6e-06  Score=59.84  Aligned_cols=36  Identities=19%  Similarity=0.174  Sum_probs=29.7

Q ss_pred             CCCCCCcceeccccCccccccceecccCCceeeecCCCCcEEEEEc
Q 041208           43 DFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRKEGPLKPEWHLIEY   88 (89)
Q Consensus        43 D~~GHGTH~a~taaG~~v~~a~~~G~~~~G~a~G~AP~aria~yKv   88 (89)
                      |..+|||||++++++.....          ...|+||.++|.++|+
T Consensus        42 ~~~~HGt~va~~i~~~~~~~----------~~~g~a~~a~i~~~~~   77 (241)
T cd00306          42 DGNGHGTHVAGIIAASANNG----------GGVGVAPGAKLIPVKV   77 (241)
T ss_pred             CCCCcHHHHHHHHhcCCCCC----------CCEEeCCCCEEEEEEE
Confidence            77899999999999985321          1278999999999986

Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav

>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]

Probab=97.77  E-value=4.1e-05  Score=57.69  Aligned_cols=58  Identities=26%  Similarity=0.316  Sum_probs=44.3

Q ss_pred             CCCccc--ccCCCCeEEEEecC-----------------------------CCCCCCcceeccccCccccccceecccCC
Q 041208           23 NSLWNK--ARFGEDVIIGNIDT-----------------------------DFHGHGTHTLSTVGGSFVKNVSAFGNVGD   71 (89)
Q Consensus        23 ~~~w~~--~~~G~gviIgVlDT-----------------------------D~~GHGTH~a~taaG~~v~~a~~~G~~~~   71 (89)
                      ...|..  ...++||.++|+|+                             |.++|||||++++++....+.        
T Consensus       130 ~~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~hGt~vag~ia~~~~~~~--------  201 (508)
T COG1404         130 GALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAVAGGDFVDGDPEPPFLDDNGHGTHVAGTIAAVIFDNG--------  201 (508)
T ss_pred             ccccccccCCCCCCeEEEEeccCCCCCChhhhcccccccccccCCCCCCCCCCCCCcceeeeeeeeecccCC--------
Confidence            356766  77899999999999                             345699999999998642221        


Q ss_pred             ceeeecCCCCcEEEEEc
Q 041208           72 GQRKEGPLKPEWHLIEY   88 (89)
Q Consensus        72 G~a~G~AP~aria~yKv   88 (89)
                      ....|++|.+++..+|+
T Consensus       202 ~~~~g~a~~~~~~~~~~  218 (508)
T COG1404         202 AGVAGVAPGAKLLLVKV  218 (508)
T ss_pred             CccccccCCCcEEEEEe
Confidence            11467899999999886

>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]

Probab=97.73  E-value=3.4e-05  Score=68.27  Aligned_cols=37  Identities=11%  Similarity=0.030  Sum_probs=30.0

Q ss_pred             CCCCCCcceeccccCccccccceecccCCceeeecCCCCcEEEEEc
Q 041208           43 DFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRKEGPLKPEWHLIEY   88 (89)
Q Consensus        43 D~~GHGTH~a~taaG~~v~~a~~~G~~~~G~a~G~AP~aria~yKv   88 (89)
                      +..-|||||||||+++.-.+-.+         .|+||.|+|...|+
T Consensus       308 ~Sg~HGTHVAgIa~anhpe~p~~---------NGvAPgaqIvSl~I  344 (1304)
T KOG1114|consen  308 VSGPHGTHVAGIAAANHPETPEL---------NGVAPGAQIVSLKI  344 (1304)
T ss_pred             cCCCCcceehhhhccCCCCCccc---------cCCCCCCEEEEEEe
Confidence            66679999999999997554333         45899999999886

>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]

Probab=97.66  E-value=4.3e-05  Score=65.69  Aligned_cols=53  Identities=26%  Similarity=0.344  Sum_probs=46.6

Q ss_pred             CCCcccccCCCCeEEEEecC-------------------------CCCCCCcceeccccCccccccceecccCCceeeec
Q 041208           23 NSLWNKARFGEDVIIGNIDT-------------------------DFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRKEG   77 (89)
Q Consensus        23 ~~~w~~~~~G~gviIgVlDT-------------------------D~~GHGTH~a~taaG~~v~~a~~~G~~~~G~a~G~   77 (89)
                      +-+|.....|.+|-++|+||                         |..||||.+|+.+||..             .-.|.
T Consensus       191 d~LWk~GyTGa~VkvAiFDTGl~~~HPHFrnvKERTNWTNE~tLdD~lgHGTFVAGvia~~~-------------ec~gf  257 (1033)
T KOG4266|consen  191 DHLWKKGYTGAKVKVAIFDTGLRADHPHFRNVKERTNWTNEDTLDDNLGHGTFVAGVIAGRN-------------ECLGF  257 (1033)
T ss_pred             hhHHhccccCCceEEEEeecccccCCccccchhhhcCCcCccccccCcccceeEeeeeccch-------------hhccc
Confidence            46899999999999999999                         77899999999999874             13568


Q ss_pred             CCCCcEEEEEc
Q 041208           78 PLKPEWHLIEY   88 (89)
Q Consensus        78 AP~aria~yKv   88 (89)
                      ||.+.|.+++|
T Consensus       258 a~d~e~~~frv  268 (1033)
T KOG4266|consen  258 ASDTEIYAFRV  268 (1033)
T ss_pred             CCccceeEEEe
Confidence            99999999987

>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2

Probab=97.41  E-value=1.8e-05  Score=59.14  Aligned_cols=20  Identities=30%  Similarity=0.424  Sum_probs=17.1

Q ss_pred             ecCCCCCCCcceeccccCcc
Q 041208           40 IDTDFHGHGTHTLSTVGGSF   59 (89)
Q Consensus        40 lDTD~~GHGTH~a~taaG~~   59 (89)
                      .+.|++|||||||+|++|..
T Consensus        32 ~~~~~~~HGThVAgiiag~~   51 (247)
T cd07488          32 RNNTFDDHATLVASIMGGRD   51 (247)
T ss_pred             CCCCCCCHHHHHHHHHHhcc
Confidence            34499999999999999873

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]

Probab=87.75  E-value=0.44  Score=39.73  Aligned_cols=56  Identities=21%  Similarity=0.262  Sum_probs=41.1

Q ss_pred             CCCcccccCCCCeEEEEecC---------------------------------C--CCCCCcceeccccCccccccceec
Q 041208           23 NSLWNKARFGEDVIIGNIDT---------------------------------D--FHGHGTHTLSTVGGSFVKNVSAFG   67 (89)
Q Consensus        23 ~~~w~~~~~G~gviIgVlDT---------------------------------D--~~GHGTH~a~taaG~~v~~a~~~G   67 (89)
                      ...|.....|++|.++|.|-                                 |  .+.|||.||+-++...-  .++-|
T Consensus       151 ~~awa~g~tgknvttaimddgvdymhpdlk~nynaeasydfssndpfpyprytddwfnshgtrcagev~aard--ngicg  228 (629)
T KOG3526|consen  151 AEAWALGYTGKNVTTAIMDDGVDYMHPDLKSNYNAEASYDFSSNDPFPYPRYTDDWFNSHGTRCAGEVVAARD--NGICG  228 (629)
T ss_pred             HHHHhhcccCCCceEEeecCCchhcCcchhcccCceeecccccCCCCCCCcccchhhhccCccccceeeeecc--CCcee
Confidence            46899999999999999998                                 2  46899999986665432  22333


Q ss_pred             ccCCceeeecCCCCcEEEEE
Q 041208           68 NVGDGQRKEGPLKPEWHLIE   87 (89)
Q Consensus        68 ~~~~G~a~G~AP~aria~yK   87 (89)
                             .|+|...+|+-++
T Consensus       229 -------vgvaydskvagir  241 (629)
T KOG3526|consen  229 -------VGVAYDSKVAGIR  241 (629)
T ss_pred             -------eeeeeccccceee
Confidence                   4677777776554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	89
3vta_A	621	Cucumisin; subtilisin-like fold, serine protease,	6e-13
3i6s_A	649	Subtilisin-like protease; PA-domain, FN3-domain, h	3e-11
1xf1_A	926	C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St	1e-05
1xf1_A	926	C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St	1e-04
4dzt_A	276	Aqualysin-1, aqualysin-I; serine protease, calcium	7e-05
3afg_A	539	Subtilisin-like serine protease; propeptide, therm	2e-04
2b6n_A	278	Proteinase K; S binding, substrate specificity, pr	2e-04
1sh7_A	284	Extracellular subtilisin-like serine proteinase; c	3e-04
2pwa_A	279	Proteinase K; structure, alanine boronic acid, hyd	5e-04
3f7m_A	279	Alkaline serine protease VER112; verticillium psal	7e-04

>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} Length = 621

 Score = 61.2 bits (148), Expect = 6e-13
 Identities = 25/132 (18%), Positives = 37/132 (28%), Gaps = 65/132 (49%)

Query: 5   TTRSWDFLGMEKDNIMPPNSLWNKARFGEDVIIGNIDT-------DFHGHG--------- 48
           TTRSWDFLG        P ++  +++   ++++G +DT        F   G         
Sbjct: 1   TTRSWDFLGF-------PLTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWK 53

Query: 49  ------------------------------------------THTLSTVGGSFVKNVSAF 66
                                                     THT ST  G  V   + +
Sbjct: 54  GTCETSNNFRCNRKIIGARSYHIGRPISPGDVNGPRDTNGHGTHTASTAAGGLVSQANLY 113

Query: 67  GNVGDGQRKEGP 78
           G      R   P
Sbjct: 114 GLGLGTARGGVP 125

>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* Length = 649

 Score = 56.7 bits (136), Expect = 3e-11
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 12/52 (23%)

Query: 5  TTRSWDFLGMEKDNIMPPNSLWNKARFGEDVIIGNIDT-------DFHGHGT 49
          TT + DFL +      P + LW  +  G+DVI+  +D+        F   G 
Sbjct: 1  TTHTSDFLKLN-----PSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGM 47

>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Length = 926

 Score = 41.2 bits (96), Expect = 1e-05
 Identities = 10/62 (16%), Positives = 18/62 (29%), Gaps = 1/62 (1%)

Query: 9   WDFLGMEKDNIMPPNSLWN-KARFGEDVIIGNIDTDFHGHGTHTLSTVGGSFVKNVSAFG 67
            D    +K++ +      N K  +  D            HGTH    + G+         
Sbjct: 49  EDLEKAKKEHGITYGEWVNDKVAYYHDYSKDGKTAVDQEHGTHVSGILSGNAPSETKEPY 108

Query: 68  NV 69
            +
Sbjct: 109 RL 110

>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Length = 926

 Score = 37.7 bits (87), Expect = 1e-04
 Identities = 6/34 (17%), Positives = 10/34 (29%), Gaps = 7/34 (20%)

Query: 23 NSLWNKARFGEDVIIGNIDT-------DFHGHGT 49
           +L  KA  G   ++  ID         +     
Sbjct: 7  KTLQEKAGKGAGTVVAVIDAGFDKNHEAWRLTDK 40

>4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276

 Score = 38.3 bits (90), Expect = 7e-05
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 29 ARFGEDVIIGNIDTDFHGHGTHTLSTVGGS 58
          AR G D  +G    D +GHGTH   T+GG 
Sbjct: 53 ARVGYD-ALGGNGQDCNGHGTHVAGTIGGV 81

>3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539

 Score = 37.1 bits (86), Expect = 2e-04
 Identities = 18/69 (26%), Positives = 22/69 (31%), Gaps = 28/69 (40%)

Query: 17  DNIMPPNSLWNKARFGEDVIIGNIDT---------------------------DFHGHGT 49
             +M  N  WN    G  + IG IDT                           D +GHGT
Sbjct: 124 AQVMATNM-WNLGYDGSGITIGIIDTGIDASHPDLQGKVIGWVDFVNGKTTPYDDNGHGT 182

Query: 50  HTLSTVGGS 58
           H  S   G+
Sbjct: 183 HVASIAAGT 191

>2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278

 Score = 36.8 bits (86), Expect = 2e-04
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 29 ARFGEDVIIG-NIDTDFHGHGTHTLSTVGGS 58
          A  G D I      TD +GHGTH   T+GGS
Sbjct: 53 ASSGYDFIDNDYDATDCNGHGTHVAGTIGGS 83

>1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284

 Score = 36.4 bits (85), Expect = 3e-04
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 29 ARFGEDVIIG-NIDTDFHGHGTHTLSTVGGS 58
          +  G D +      +D +GHGTH   T+GGS
Sbjct: 51 SVSGYDFVDNDADSSDCNGHGTHVAGTIGGS 81

>2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279

 Score = 36.0 bits (84), Expect = 5e-04
 Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 2/30 (6%)

Query: 29 ARFGEDVIIGNIDTDFHGHGTHTLSTVGGS 58
          A+  +         D +GHGTH   TVG  
Sbjct: 53 AQMVKTYYYS--SRDGNGHGTHCAGTVGSR 80

>3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279

 Score = 35.6 bits (83), Expect = 7e-04
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 2/30 (6%)

Query: 29 ARFGEDVIIGNIDTDFHGHGTHTLSTVGGS 58
          A+  +     +   D HGHGTH   T+G  
Sbjct: 54 AKQIKS--YASTARDGHGHGTHCAGTIGSK 81

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	89
3vta_A	621	Cucumisin; subtilisin-like fold, serine protease,	99.92
3i6s_A	649	Subtilisin-like protease; PA-domain, FN3-domain, h	99.87
4h6w_A	306	N-terminal cyanobactin protease; hydrolase; 2.45A	99.4
1xf1_A	926	C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St	99.39
3afg_A	539	Subtilisin-like serine protease; propeptide, therm	99.37
3t41_A	471	Epidermin leader peptide processing serine protea;	99.32
3hjr_A	600	Extracellular serine protease; kexin, hydrolase; 1	99.3
2oxa_A	600	Extracellular serine protease; kexin, hydrolase; 1	99.29
2ixt_A	310	36KDA protease; serine protease, sphericase, subti	99.23
4h6x_A	357	Thiazoline oxidase/subtilisin-like protease; hydro	99.21
1r0r_E	274	Subtilisin carlsberg; high resolution, serine prot	99.2
2z30_A	320	TK-subtilisin; thermococcus kodakaraensis, hydrola	99.19
1dbi_A	280	AK.1 serine protease; hydrolase; 1.80A {Bacillus S	99.19
1gci_A	269	Subtilisin; hydrolase, serine protease; 0.78A {Bac	99.19
1to2_E	281	Subtilisin BPN'; serine protease, hydrolase; HET:	99.19
4dzt_A	276	Aqualysin-1, aqualysin-I; serine protease, calcium	99.18
2x8j_A	327	Intracellular subtilisin protease; hydrolase, seri	99.18
1sh7_A	284	Extracellular subtilisin-like serine proteinase; c	99.17
2b6n_A	278	Proteinase K; S binding, substrate specificity, pr	99.17
3f7m_A	279	Alkaline serine protease VER112; verticillium psal	99.16
2z2z_A	395	TK-subtilisin precursor; thermococcus kodakaraensi	99.16
3zxy_A	282	Subtilisin-like protein; hydrolase; 1.58A {Prochlo	99.15
1thm_A	279	Thermitase; hydrolase(serine protease); 1.37A {The	99.14
2id4_A	503	Kexin; KEX2, kexin, furin, proprotein, prohormone,	99.1
1p8j_A	471	Furin precursor; prohormone convertase, SPC1, PACE	99.1
2pwa_A	279	Proteinase K; structure, alanine boronic acid, hyd	99.06
2iy9_A	347	SUBA; toxin, shiga, plasmid; 1.8A {Escherichia col	99.04
1y9z_A	441	Alkaline serine protease; subtilisin-like alpha/be	99.02
1wmd_A	434	Protease; alpha-beta hydrolase fold, jelly-roll be	99.01
2p4e_P	692	Proprotein convertase subtilisin/kexin type 9; pro	99.01
3lpc_A	340	APRB2; protease, subtilase, virulence factor, hydr	99.0
1r6v_A	671	Subtilisin-like serine protease; sandwich domain,	98.99
2qtw_B	546	Proprotein convertase subtilisin/kexin type 9; cor	98.92
3lxu_X	1354	Tripeptidyl-peptidase 2; spindle complex, aminopep	98.46

>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}

Probab=99.92  E-value=7.2e-27  Score=189.54  Aligned_cols=76  Identities=36%  Similarity=0.651  Sum_probs=71.2

Q ss_pred             CCCCCCccccccCCCCCCCCCcccccCCCCeEEEEecC------------------------------------------
Q 041208            5 TTRSWDFLGMEKDNIMPPNSLWNKARFGEDVIIGNIDT------------------------------------------   42 (89)
Q Consensus         5 TTrSw~flgl~~~~~~~~~~~w~~~~~G~gviIgVlDT------------------------------------------   42 (89)
                      ||||||||||+.       .+|.++..|+|||||||||                                          
T Consensus         1 tt~s~~flGl~~-------~~~~~~~~G~gViVgViDTGId~~Hp~f~d~g~~~~~~~w~g~~~~~~~~~~n~k~ig~~~   73 (621)
T 3vta_A            1 TTRSWDFLGFPL-------TVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSNNFRCNRKIIGARS   73 (621)
T ss_dssp             CCSHHHHTTCCT-------TCCCCHHHHTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCSSSCCCCSSEEEEEE
T ss_pred             CCCChhHcCCCc-------cccccCCCCCCCEEEEEecCCCCCChhhcCCCCCCcccccccccccCCCcccCcceeeeee
Confidence            899999999983       5788888999999999999                                          


Q ss_pred             ----------------CCCCCCcceeccccCccccccceecccCCceeeecCCCCcEEEEEc
Q 041208           43 ----------------DFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRKEGPLKPEWHLIEY   88 (89)
Q Consensus        43 ----------------D~~GHGTH~a~taaG~~v~~a~~~G~~~~G~a~G~AP~aria~yKv   88 (89)
                                      |++|||||||||+||+.+.+++++| ++.|+++|+||+|+|++|||
T Consensus        74 ~~~~~~~~~~~~~~p~D~~GHGTHvAgi~AG~~~~~~~~~g-~~~g~~~GvAP~A~l~~~kv  134 (621)
T 3vta_A           74 YHIGRPISPGDVNGPRDTNGHGTHTASTAAGGLVSQANLYG-LGLGTARGGVPLARIAAYKV  134 (621)
T ss_dssp             CCCSSSCCTTCCSSSBCSSSHHHHHHHHHHCCCEEEEEETT-EEEEEECCSCTTSEEEEEEC
T ss_pred             cccCCccCCCCCCCCCCCCcCHHHHHHHHhCcCCCCccccc-cccccEEEECCCCEEEEEEe
Confidence                            5679999999999999999999999 89999999999999999997

>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*

Probab=99.87  E-value=5.1e-24  Score=174.81  Aligned_cols=78  Identities=35%  Similarity=0.647  Sum_probs=72.5

Q ss_pred             CCCCCCccccccCCCCCCCCCcccccCCCCeEEEEecC----------C-------------------------------
Q 041208            5 TTRSWDFLGMEKDNIMPPNSLWNKARFGEDVIIGNIDT----------D-------------------------------   43 (89)
Q Consensus         5 TTrSw~flgl~~~~~~~~~~~w~~~~~G~gviIgVlDT----------D-------------------------------   43 (89)
                      ||||||||||+..     .++|..+..|+||+||||||          |                               
T Consensus         1 Tt~s~~flgl~~~-----~~~w~~~~~G~gViVaViDTGId~~Hp~f~d~g~~p~p~~wkg~c~~g~~f~~~~cN~kiig   75 (649)
T 3i6s_A            1 TTHTSDFLKLNPS-----SGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKPGTQFNASMCNRKLIG   75 (649)
T ss_dssp             CCSHHHHTTCCSS-----SSHHHHHGGGTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCBTTBCTTSCCSSEEE
T ss_pred             CCCChHHcCCCCc-----hhhHhccCCCCCCEEEEEccCCCCCChhhccCCCCCCccccccccccCccccccccccceee
Confidence            8999999999842     58999999999999999999          3                               


Q ss_pred             ------------------------CCCCCcceeccccCccccccceecccCCceeeecCCCCcEEEEEc
Q 041208           44 ------------------------FHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRKEGPLKPEWHLIEY   88 (89)
Q Consensus        44 ------------------------~~GHGTH~a~taaG~~v~~a~~~G~~~~G~a~G~AP~aria~yKv   88 (89)
                                              .+|||||||+|++|+.+.+++++| ++.|+++|+||+|+|++|||
T Consensus        76 ~~~f~~~~~~~~~~~~~~~~~~~D~~GHGThVAgiiag~~~~~~~~~G-~~~g~~~GvAP~A~l~~~kv  143 (649)
T 3i6s_A           76 ANYFNKGILANDPTVNITMNSARDTDGHGTHCASITAGNFAKGVSHFG-YAPGTARGVAPRARLAVYKF  143 (649)
T ss_dssp             EEECCHHHHHHCTTCCCTTCSSBCSSSHHHHHHHHHHCCCEEEEEETT-EEEEEECCSSTTCEEEEEEC
T ss_pred             eEeccCcccccccccccCCCCCCCCCCcHHHHHHHHhCCCCcCccccc-cccCceeEECCCCEEEEEec
Confidence                                    349999999999999999999999 99999999999999999997

>4h6w_A N-terminal cyanobactin protease; hydrolase; 2.45A {Planktothrix agardhii nies-596}

Probab=99.40  E-value=1.5e-14  Score=106.54  Aligned_cols=54  Identities=19%  Similarity=0.265  Sum_probs=45.5

Q ss_pred             CCcccccCCCCeEEEEecC-----------------------------CCCCCCcceeccccCccccccceecccCCcee
Q 041208           24 SLWNKARFGEDVIIGNIDT-----------------------------DFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQR   74 (89)
Q Consensus        24 ~~w~~~~~G~gviIgVlDT-----------------------------D~~GHGTH~a~taaG~~v~~a~~~G~~~~G~a   74 (89)
                      .+|..++-++||+|+||||                             |.+|||||||++++|+.-          . ..
T Consensus        12 ~aW~~~~G~~gV~VaViDtGid~~Hpdl~g~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~----------~-~~   80 (306)
T 4h6w_A           12 KLWSETRGDPKICVAVLDGIVDQNHPCFIGADLTRLPSLVSGEANANGSMSTHGTHVASIIFGQHD----------S-PV   80 (306)
T ss_dssp             HHHHHCSCCTTCEEEEESSCCCTTSGGGTTCEEEECC----------CCCCHHHHHHHHHHHCCTT----------S-SS
T ss_pred             HHHhhhCCCCCCEEEEEcCCCCCCChhHcCCcccCCCcccCCCCCCCCCCCCchHHHHHHHHcccc----------C-Cc
Confidence            5899887568999999999                             667899999999998731          1 24


Q ss_pred             eecCCCCcEEEEEc
Q 041208           75 KEGPLKPEWHLIEY   88 (89)
Q Consensus        75 ~G~AP~aria~yKv   88 (89)
                      .|+||+|+|.++|+
T Consensus        81 ~GVAp~a~l~~~kv   94 (306)
T 4h6w_A           81 TGIAPQCRGLIVPV   94 (306)
T ss_dssp             CCSSTTSEEEECCC
T ss_pred             ceeccccccceeec
Confidence            78999999999997

>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A*

Probab=99.39  E-value=6e-14  Score=118.45  Aligned_cols=61  Identities=20%  Similarity=0.227  Sum_probs=51.2

Q ss_pred             CCcccccCCCCeEEEEecC---------------------------------------------------------CCCC
Q 041208           24 SLWNKARFGEDVIIGNIDT---------------------------------------------------------DFHG   46 (89)
Q Consensus        24 ~~w~~~~~G~gviIgVlDT---------------------------------------------------------D~~G   46 (89)
                      .+|.....|+||+||||||                                                         |++|
T Consensus         8 ~~w~~~~~G~GV~VaVIDTGId~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~n~Kii~~~~~~~~~~~~D~~g   87 (926)
T 1xf1_A            8 TLQEKAGKGAGTVVAVIDAGFDKNHEAWRLTDKTKARYQSKEDLEKAKKEHGITYGEWVNDKVAYYHDYSKDGKTAVDQE   87 (926)
T ss_dssp             HHHHHHCSCTTCEEEEEESCCTTCCCCCSCCSCCCSSCCHHHHHHHHHHTTTCCCCBCCSSSCCEEEESCCCSCCCCSST
T ss_pred             HHHhccCCCCCcEEEEEecCCCCCCHhHcCCCCCcccccchhhhcccccccCcccccccCcccceeeccccCCCCCCCCC
Confidence            5898888999999999999                                                         1257


Q ss_pred             CCcceeccccCccccccceecccCCceeeecCCCCcEEEEEcC
Q 041208           47 HGTHTLSTVGGSFVKNVSAFGNVGDGQRKEGPLKPEWHLIEYA   89 (89)
Q Consensus        47 HGTH~a~taaG~~v~~a~~~G~~~~G~a~G~AP~aria~yKv~   89 (89)
                      ||||||+|+||+.+.+++.     .+.++|+||+|+|++|||.
T Consensus        88 HGThVAgiiAg~~~~~~~~-----~~~~~GvAP~A~l~~~kv~  125 (926)
T 1xf1_A           88 HGTHVSGILSGNAPSETKE-----PYRLEGAMPEAQLLLMRVE  125 (926)
T ss_dssp             TTTHHHHSSCCCCCCCCSC-----SCCTTTTCTTSEEEEEECC
T ss_pred             cHHHHHHHHhCCCccCccc-----CCceEEECCCCEEEEEEee
Confidence            9999999999998776542     1356899999999999983

>3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis}

Probab=99.37  E-value=1.1e-13  Score=111.17  Aligned_cols=58  Identities=33%  Similarity=0.456  Sum_probs=49.5

Q ss_pred             CCCcccccCCCCeEEEEecC---------------------------CCCCCCcceeccccCccccccceecccCCceee
Q 041208           23 NSLWNKARFGEDVIIGNIDT---------------------------DFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRK   75 (89)
Q Consensus        23 ~~~w~~~~~G~gviIgVlDT---------------------------D~~GHGTH~a~taaG~~v~~a~~~G~~~~G~a~   75 (89)
                      +.+|.....|+||+|+||||                           |++|||||||+|++|+..        ...|.+.
T Consensus       129 ~~~~~~g~~G~gv~VaViDtGid~~Hpdl~~~i~~~~d~~~~~~~~~D~~gHGThVAgiiag~~~--------~~~g~~~  200 (539)
T 3afg_A          129 TNMWNLGYDGSGITIGIIDTGIDASHPDLQGKVIGWVDFVNGKTTPYDDNGHGTHVASIAAGTGA--------ASNGKYK  200 (539)
T ss_dssp             SCCBCCSCCCTTCEEEEEESBCCTTSGGGTTTEEEEEETTTCCSSCCBSSSHHHHHHHHHHCCCG--------GGTTTTC
T ss_pred             HhHHhcCCCCCCcEEEEEecCCCCCChHHhCCEeeeEECCCCCCCCCCCCCCHHHHHHHHhCcCc--------cCCCCEE
Confidence            46898888899999999999                           678999999999999742        1234568


Q ss_pred             ecCCCCcEEEEEc
Q 041208           76 EGPLKPEWHLIEY   88 (89)
Q Consensus        76 G~AP~aria~yKv   88 (89)
                      |+||+|+|++|||
T Consensus       201 GvAp~A~l~~~kv  213 (539)
T 3afg_A          201 GMAPGAKLVGIKV  213 (539)
T ss_dssp             CSCTTCEEEEEEC
T ss_pred             EECCCCEEEEEEe
Confidence            9999999999997

>3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A

Probab=99.32  E-value=2.5e-13  Score=105.53  Aligned_cols=52  Identities=19%  Similarity=0.246  Sum_probs=45.4

Q ss_pred             CCcccccCCCCeEEEEecC-----------------------------------------CCCCCCcceeccccCccccc
Q 041208           24 SLWNKARFGEDVIIGNIDT-----------------------------------------DFHGHGTHTLSTVGGSFVKN   62 (89)
Q Consensus        24 ~~w~~~~~G~gviIgVlDT-----------------------------------------D~~GHGTH~a~taaG~~v~~   62 (89)
                      ..|.....|+||+|+||||                                         |++|||||||++++|+    
T Consensus       137 ~~~~~~~~G~gv~VaViDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgiiaa~----  212 (471)
T 3t41_A          137 ASYDDLPKHANTKIAIIDTGVMKNHDDLKNNFSTDSKNLVPLNGFRGTEPEETGDVHDVNDRKGHGTMVSGQTSAN----  212 (471)
T ss_dssp             GGGGGCCSSCCCCEEEEESCCCTTCTTTTTTBCTTCEECCCTTCGGGCCTTCCCCTTCCCCSSSHHHHHHHHHHCB----
T ss_pred             HHHhccCCCCCcEEEEEeCCCCCCChhHhcCcccCCcccccCCCccCCCcccCCCCCCCcCCCCccchhhheeecC----
Confidence            6888888899999999999                                         4678999999999975    


Q ss_pred             cceecccCCceeeecCCCCcEEEEEc
Q 041208           63 VSAFGNVGDGQRKEGPLKPEWHLIEY   88 (89)
Q Consensus        63 a~~~G~~~~G~a~G~AP~aria~yKv   88 (89)
                          |     ...|+||+|+|++||+
T Consensus       213 ----g-----~~~GvAp~a~l~~~kv  229 (471)
T 3t41_A          213 ----G-----KLIGVAPNNKFTMYRV  229 (471)
T ss_dssp             ----S-----SSBCSSTTSCEEEEEC
T ss_pred             ----C-----ceeEECCCCeEEEEEe
Confidence                2     1478999999999997

>3hjr_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas sobria}

Probab=99.30  E-value=3.3e-13  Score=107.61  Aligned_cols=56  Identities=14%  Similarity=0.097  Sum_probs=46.5

Q ss_pred             CCCcccccCCCCeEEEEecC-------------------------------CCCCCCcceeccccCccccccceecccCC
Q 041208           23 NSLWNKARFGEDVIIGNIDT-------------------------------DFHGHGTHTLSTVGGSFVKNVSAFGNVGD   71 (89)
Q Consensus        23 ~~~w~~~~~G~gviIgVlDT-------------------------------D~~GHGTH~a~taaG~~v~~a~~~G~~~~   71 (89)
                      ..+|.....|+||+|+||||                               |++|||||||+++|+..         .+.
T Consensus        60 ~~aw~~g~tG~GV~VaViDtGid~~HpDL~~n~~~~~~~~~~~~~dp~p~~~~~gHGThVAGiIAa~~---------n~~  130 (600)
T 3hjr_A           60 WWAHRTGVLGQGVNVAVVDDGLAIAHPDLADNVRPGSKNVVTGSDDPTPTDPDTAHGTSVSGIIAAVD---------NAI  130 (600)
T ss_dssp             HHHHHHTCSCTTCEEEEESSCCCTTCTTTGGGBCSCCBCTTTSSSCCCCCSTTCCHHHHHHHHHHCCS---------SSS
T ss_pred             HHHHHcCCCCCCeEEEEEcCCCCCCChhHhhccccCcceeecCCCCCCCCCCCCChHHHHHHHHhEeC---------CCC
Confidence            35788888899999999999                               46799999999999852         122


Q ss_pred             ceeeecCCCCcEEEEEc
Q 041208           72 GQRKEGPLKPEWHLIEY   88 (89)
Q Consensus        72 G~a~G~AP~aria~yKv   88 (89)
                      | ..||||+|+|+.||+
T Consensus       131 g-~~GVAp~A~l~~~rv  146 (600)
T 3hjr_A          131 G-TKGIAPRAQLQGFNL  146 (600)
T ss_dssp             S-CCCSSTTCEEEEECT
T ss_pred             C-cEEeCCCCEEEEEEe
Confidence            2 368999999999997

>2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A*

Probab=99.23  E-value=2.7e-12  Score=94.94  Aligned_cols=58  Identities=21%  Similarity=0.160  Sum_probs=48.1

Q ss_pred             CCCcccccCCCCeEEEEecC-------------------------------CCCCCCcceeccccCccccccceecccCC
Q 041208           23 NSLWNKARFGEDVIIGNIDT-------------------------------DFHGHGTHTLSTVGGSFVKNVSAFGNVGD   71 (89)
Q Consensus        23 ~~~w~~~~~G~gviIgVlDT-------------------------------D~~GHGTH~a~taaG~~v~~a~~~G~~~~   71 (89)
                      +.+|.....|++|+|+||||                               |+.|||||||++++++...+       ..
T Consensus        16 ~~~w~~~~~G~gv~VaViDtGvd~~H~~l~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgiia~~~~~n-------~~   88 (310)
T 2ixt_A           16 NDTLTSTTGGSGINIAVLDTGVNTSHPDLVNNVEQCKDFTGATTPINNSCTDRNGHGTHVAGTALADGGSD-------QA   88 (310)
T ss_dssp             CTTCCCCCCCTTCEEEEEESCCCTTCTTTTTTEEEEEESSSSSSCEETCCCCSSSHHHHHHHHHHCBCCTT-------SC
T ss_pred             hhhhhccCCCCCcEEEEEecCCCCCCHHHhhcccccccccCCCCCCCCCCCCCCCCHHHHHHHHhccCCCC-------CC
Confidence            46898888899999999999                               56799999999999874221       11


Q ss_pred             ceeeecCCCCcEEEEEc
Q 041208           72 GQRKEGPLKPEWHLIEY   88 (89)
Q Consensus        72 G~a~G~AP~aria~yKv   88 (89)
                       ...|+||+|+|.+||+
T Consensus        89 -g~~GvAp~a~l~~~~v  104 (310)
T 2ixt_A           89 -GIYGVAPDADLWAYKV  104 (310)
T ss_dssp             -SCBCSCTTSEEEEEEC
T ss_pred             -ceEEECCCCEEEEEEE
Confidence             2478999999999997

>4h6x_A Thiazoline oxidase/subtilisin-like protease; hydrolase; 2.00A {Prochloron didemni} PDB: 4aks_A 4akt_A

Probab=99.21  E-value=6.6e-13  Score=100.94  Aligned_cols=32  Identities=16%  Similarity=-0.069  Sum_probs=26.5

Q ss_pred             CCCcceeccccCccccccceecccCCceeeecCCCCcEEEEEc
Q 041208           46 GHGTHTLSTVGGSFVKNVSAFGNVGDGQRKEGPLKPEWHLIEY   88 (89)
Q Consensus        46 GHGTH~a~taaG~~v~~a~~~G~~~~G~a~G~AP~aria~yKv   88 (89)
                      |||||||+|++|+..          .+ ..|+||.|+|+++|+
T Consensus       108 gHGThVAGiiag~~~----------~g-~~GvAp~a~l~~~k~  139 (357)
T 4h6x_A          108 DHACHVTSTIVGQEH----------SP-VFGIAPNCRVINMPQ  139 (357)
T ss_dssp             HHHHHHHHHHHCCTT----------SS-CCCSCTTSEEEEEEC
T ss_pred             CcHHHHHHHHhccCC----------CC-ceEeeccceEEeeee
Confidence            699999999998731          11 468999999999996

>1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ...

Probab=99.20  E-value=2.7e-12  Score=94.33  Aligned_cols=56  Identities=23%  Similarity=0.220  Sum_probs=46.9

Q ss_pred             CCCcccccCCCCeEEEEecC-------------------------CCCCCCcceeccccCccccccceecccCCceeeec
Q 041208           23 NSLWNKARFGEDVIIGNIDT-------------------------DFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRKEG   77 (89)
Q Consensus        23 ~~~w~~~~~G~gviIgVlDT-------------------------D~~GHGTH~a~taaG~~v~~a~~~G~~~~G~a~G~   77 (89)
                      +.+|.....|+||+|+||||                         |.+|||||||+++++..         ...+ ..|+
T Consensus        14 ~~~~~~g~~G~gv~VaViDtGid~~h~~l~~~~g~~~~~~~~~~~d~~gHGT~vAgiia~~~---------~~~g-~~Gv   83 (274)
T 1r0r_E           14 DKVQAQGFKGANVKVAVLDTGIQASHPDLNVVGGASFVAGEAYNTDGNGHGTHVAGTVAALD---------NTTG-VLGV   83 (274)
T ss_dssp             HHHHHHTCSCTTCEEEEEESCCCTTCTTCCEEEEEECSTTCCTTCCSSSHHHHHHHHHHCCS---------SSSB-CCCS
T ss_pred             HHHHhcCCCCCCCEEEEEcCCCCCCCHhHcCCCCccccCCCCCCCCCCCCHHHHHHHHHccC---------CCCc-eEEE
Confidence            36788887899999999999                         67899999999999862         1112 4789


Q ss_pred             CCCCcEEEEEc
Q 041208           78 PLKPEWHLIEY   88 (89)
Q Consensus        78 AP~aria~yKv   88 (89)
                      ||+|+|.++|+
T Consensus        84 Ap~a~l~~~~v   94 (274)
T 1r0r_E           84 APSVSLYAVKV   94 (274)
T ss_dssp             STTSEEEEEEC
T ss_pred             CCCCEEEEEEE
Confidence            99999999997

>2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A

Probab=99.19  E-value=5.2e-12  Score=94.45  Aligned_cols=55  Identities=25%  Similarity=0.343  Sum_probs=45.7

Q ss_pred             CCCcccccCCC--CeEEEEecC--------------------------------CCCCCCcceeccccCccccccceecc
Q 041208           23 NSLWNKARFGE--DVIIGNIDT--------------------------------DFHGHGTHTLSTVGGSFVKNVSAFGN   68 (89)
Q Consensus        23 ~~~w~~~~~G~--gviIgVlDT--------------------------------D~~GHGTH~a~taaG~~v~~a~~~G~   68 (89)
                      +.+|... .|+  +|+|+||||                                |..|||||||+++++..  +    + 
T Consensus        18 ~~aw~~~-~G~~~gv~VaViDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgiia~~~--n----~-   89 (320)
T 2z30_A           18 PSVWSIT-DGSVSVIQVAVLDTGVDYDHPDLAANIAWCVSTLRGKVSTKLRDCADQNGHGTHVIGTIAALN--N----D-   89 (320)
T ss_dssp             GGGTTTC-CSCCTTCEEEEEESCBCTTCTTTGGGEEEEEECGGGCCBCCHHHHBCSSSHHHHHHHHHHCCS--S----S-
T ss_pred             HHHHHhc-CCCcCCeEEEEECCCCCCCChhHhcccccCccccCCccCCCCCCCCCCCCCHHHHHHHHHccc--C----C-
Confidence            4689877 699  999999999                                67799999999999962  1    1 


Q ss_pred             cCCceeeecCCCCcEEEEEc
Q 041208           69 VGDGQRKEGPLKPEWHLIEY   88 (89)
Q Consensus        69 ~~~G~a~G~AP~aria~yKv   88 (89)
                        .| ..|+||+|+|+++|+
T Consensus        90 --~g-~~GvAp~a~l~~~~v  106 (320)
T 2z30_A           90 --IG-VVGVAPGVQIYSVRV  106 (320)
T ss_dssp             --BS-CCCSSTTCEEEEEEC
T ss_pred             --Cc-eEeeCCCCEEEEEEe
Confidence              11 478999999999997

>1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1

Probab=99.19  E-value=4.1e-12  Score=93.78  Aligned_cols=57  Identities=19%  Similarity=0.255  Sum_probs=46.8

Q ss_pred             CCCcccccCCCCeEEEEecC---------------------------CCCCCCcceeccccCccccccceecccCCceee
Q 041208           23 NSLWNKARFGEDVIIGNIDT---------------------------DFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRK   75 (89)
Q Consensus        23 ~~~w~~~~~G~gviIgVlDT---------------------------D~~GHGTH~a~taaG~~v~~a~~~G~~~~G~a~   75 (89)
                      +.+|.....+++|+|+||||                           |.+|||||||+++++....        ..| ..
T Consensus        21 ~~aw~~~~g~~gv~VaViDtGvd~~hp~l~~~~~~~~~~~~~~~~~~d~~gHGT~vAgiia~~~~~--------~~g-~~   91 (280)
T 1dbi_A           21 DYAWDVTKGSSGQEIAVIDTGVDYTHPDLDGKVIKGYDFVDNDYDPMDLNNHGTHVAGIAAAETNN--------ATG-IA   91 (280)
T ss_dssp             HHHTTTCCCCTTCEEEEEESCCCTTSTTTTTTEEEEEETTTTBSCCCCSSSHHHHHHHHHHCCCSS--------SSS-CC
T ss_pred             HHHHhhcCCCCCCEEEEEeCCcCCCChhhccCcccceeccCCCCCCCCCCCcHHHHHHHHhCcCCC--------CCc-ce
Confidence            46888877666999999999                           6789999999999987422        112 46


Q ss_pred             ecCCCCcEEEEEc
Q 041208           76 EGPLKPEWHLIEY   88 (89)
Q Consensus        76 G~AP~aria~yKv   88 (89)
                      |+||+|+|+++|+
T Consensus        92 GvAp~a~l~~~kv  104 (280)
T 1dbi_A           92 GMAPNTRILAVRA  104 (280)
T ss_dssp             CSSSSCEEEEEEC
T ss_pred             EeCCCCEEEEEEE
Confidence            8999999999997

>1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A*

Probab=99.19  E-value=3.9e-12  Score=93.59  Aligned_cols=56  Identities=27%  Similarity=0.295  Sum_probs=46.9

Q ss_pred             CCCcccccCCCCeEEEEecC------------------------CCCCCCcceeccccCccccccceecccCCceeeecC
Q 041208           23 NSLWNKARFGEDVIIGNIDT------------------------DFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRKEGP   78 (89)
Q Consensus        23 ~~~w~~~~~G~gviIgVlDT------------------------D~~GHGTH~a~taaG~~v~~a~~~G~~~~G~a~G~A   78 (89)
                      +.+|.....|+||+|+||||                        |++|||||||+++++..  +       ..+ ..|+|
T Consensus        14 ~~a~~~g~~G~gv~VaViDtGi~~h~~l~~~~~~~~~~~~~~~~d~~gHGT~vAgiia~~~--~-------~~~-~~GvA   83 (269)
T 1gci_A           14 PAAHNRGLTGSGVKVAVLDTGISTHPDLNIRGGASFVPGEPSTQDGNGHGTHVAGTIAALN--N-------SIG-VLGVA   83 (269)
T ss_dssp             HHHHHTTCSCTTCEEEEEESCCCCCTTCCEEEEEECSTTCCSCSCSSSHHHHHHHHHHCCC--S-------SSB-CCCSS
T ss_pred             HHHHhcCCCCCCCEEEEECCCCCCCHhhcccCCcccCCCCCCCCCCCCChHHHHHHHhcCc--C-------CCC-cEEeC
Confidence            36788887899999999999                        67899999999999972  1       111 47899


Q ss_pred             CCCcEEEEEc
Q 041208           79 LKPEWHLIEY   88 (89)
Q Consensus        79 P~aria~yKv   88 (89)
                      |+|+|.++|+
T Consensus        84 p~a~l~~~~v   93 (269)
T 1gci_A           84 PSAELYAVKV   93 (269)
T ss_dssp             TTCEEEEEEC
T ss_pred             CCCEEEEEEe
Confidence            9999999997

>1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ...

Probab=99.19  E-value=3.5e-12  Score=94.16  Aligned_cols=56  Identities=23%  Similarity=0.239  Sum_probs=46.9

Q ss_pred             CCCcccccCCCCeEEEEecC--------------------------CCCCCCcceeccccCccccccceecccCCceeee
Q 041208           23 NSLWNKARFGEDVIIGNIDT--------------------------DFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRKE   76 (89)
Q Consensus        23 ~~~w~~~~~G~gviIgVlDT--------------------------D~~GHGTH~a~taaG~~v~~a~~~G~~~~G~a~G   76 (89)
                      +.+|.....|++|+|+||||                          |.+|||||||+++++..         ...+ ..|
T Consensus        14 ~~~~~~g~~G~gv~VaViDtGid~~h~~l~~~~g~~~~~~~~~~~~d~~gHGT~vAgiia~~~---------~~~g-~~G   83 (281)
T 1to2_E           14 PALHSQGYTGSNVKVAVIDSGIDSSHPDLKVAGGASMVPSETNPFQDNNSHGTHVAGTVAALN---------NSIG-VLG   83 (281)
T ss_dssp             HHHHHHTCSCTTCEEEEEESCCCTTCTTCCEEEEEECCTTCCCTTCCSSSHHHHHHHHHHCCS---------SSSS-BCC
T ss_pred             HHHHhcCCCCCCCEEEEEcCCCCCCCHHHcCcCCccccCCCCCCCCCCCCcHHHHHHHHhccC---------CCCc-cee
Confidence            36788887899999999999                          67899999999999962         1112 478


Q ss_pred             cCCCCcEEEEEc
Q 041208           77 GPLKPEWHLIEY   88 (89)
Q Consensus        77 ~AP~aria~yKv   88 (89)
                      +||+|+|.++|+
T Consensus        84 vAp~a~l~~~kv   95 (281)
T 1to2_E           84 VAPSASLYAVKV   95 (281)
T ss_dssp             SSTTSEEEEEEC
T ss_pred             eCCCCEEEEEEE
Confidence            999999999997

>4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus}

Probab=99.18  E-value=5e-12  Score=92.50  Aligned_cols=51  Identities=27%  Similarity=0.344  Sum_probs=45.6

Q ss_pred             CCCcccccCCCCeEEEEecC-------------------------CCCCCCcceeccccCccccccceecccCCceeeec
Q 041208           23 NSLWNKARFGEDVIIGNIDT-------------------------DFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRKEG   77 (89)
Q Consensus        23 ~~~w~~~~~G~gviIgVlDT-------------------------D~~GHGTH~a~taaG~~v~~a~~~G~~~~G~a~G~   77 (89)
                      ...|.....|+||.|+||||                         |.+|||||||++++|+.               .|+
T Consensus        21 ~~a~~~~~~G~gv~VaViDtGvd~~h~~l~~~~~~~~~~~~~~~~d~~gHGT~vAgiiag~~---------------~Gv   85 (276)
T 4dzt_A           21 SNSYTYTATGRGVNVYVIDTGIRTTHREFGGRARVGYDALGGNGQDCNGHGTHVAGTIGGVT---------------YGV   85 (276)
T ss_dssp             CSCEECSCCCTTCEEEEEESCCCTTCGGGTTCEEEEEETTSSCSCCSSSHHHHHHHHHHCTT---------------TCS
T ss_pred             ccceecCCCCCCcEEEEEccCCCCCChhHccCeeccccCCCCCCCCCCCCHHHHHHHHHccc---------------cCC
Confidence            46788888899999999999                         78899999999999862               468


Q ss_pred             CCCCcEEEEEc
Q 041208           78 PLKPEWHLIEY   88 (89)
Q Consensus        78 AP~aria~yKv   88 (89)
                      ||+|+|..+|+
T Consensus        86 Ap~a~l~~~~v   96 (276)
T 4dzt_A           86 AKAVNLYAVRV   96 (276)
T ss_dssp             STTCEEEEEEC
T ss_pred             CCCCEEEEEEE
Confidence            99999999997

>2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A*

Probab=99.18  E-value=2.8e-12  Score=96.61  Aligned_cols=56  Identities=36%  Similarity=0.545  Sum_probs=46.9

Q ss_pred             CCCcccccCCCCeEEEEecC-------------------------------CCCCCCcceeccccCccccccceecccCC
Q 041208           23 NSLWNKARFGEDVIIGNIDT-------------------------------DFHGHGTHTLSTVGGSFVKNVSAFGNVGD   71 (89)
Q Consensus        23 ~~~w~~~~~G~gviIgVlDT-------------------------------D~~GHGTH~a~taaG~~v~~a~~~G~~~~   71 (89)
                      +.+|.....|+||+|+||||                               |+.|||||||++++|+.  +    +   .
T Consensus        31 ~~aw~~~~~G~gv~VaViDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~VAgiia~~~--~----~---~  101 (327)
T 2x8j_A           31 PAVWRASAKGAGQIIGVIDTGCQVDHPDLAERIIGGVNLTTDYGGDETNFSDNNGHGTHVAGTVAAAE--T----G---S  101 (327)
T ss_dssp             HHHHHHHGGGTTCEEEEEESCCCTTCTTTGGGEEEEEECSSGGGGCTTCCCCSSSHHHHHHHHHHCCC--C----S---S
T ss_pred             HHHHhcCCCCCCCEEEEEcCCCCCCChhHhhcccCCccccCCCCCCCCCCCCCCCchHHHHHHHhccC--C----C---C
Confidence            36788887899999999999                               56799999999999973  1    1   1


Q ss_pred             ceeeecCCCCcEEEEEc
Q 041208           72 GQRKEGPLKPEWHLIEY   88 (89)
Q Consensus        72 G~a~G~AP~aria~yKv   88 (89)
                      | ..|+||+|+|+++|+
T Consensus       102 g-~~GvAp~a~l~~~kv  117 (327)
T 2x8j_A          102 G-VVGVAPKADLFIIKA  117 (327)
T ss_dssp             B-CCCSSTTCEEEEEEC
T ss_pred             C-cEeeCCCCEEEEEEe
Confidence            2 478999999999997

>1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A*

Probab=99.17  E-value=6.3e-12  Score=93.21  Aligned_cols=51  Identities=31%  Similarity=0.294  Sum_probs=45.1

Q ss_pred             CCCcccccCCCCeEEEEecC---------------------------CCCCCCcceeccccCccccccceecccCCceee
Q 041208           23 NSLWNKARFGEDVIIGNIDT---------------------------DFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRK   75 (89)
Q Consensus        23 ~~~w~~~~~G~gviIgVlDT---------------------------D~~GHGTH~a~taaG~~v~~a~~~G~~~~G~a~   75 (89)
                      ...|.....|++|+|+||||                           |+.|||||||++++|+.               .
T Consensus        19 ~~aw~~~~~G~gv~VaViDtGvd~~h~~l~~~~~~~~~~~~~~~~~~d~~gHGT~vAgiia~~~---------------~   83 (284)
T 1sh7_A           19 DRNYNANFDGFGVTAYVIDTGVNNNHEEFGGRSVSGYDFVDNDADSSDCNGHGTHVAGTIGGSQ---------------Y   83 (284)
T ss_dssp             CSBCCCSCCCTTCEEEEEESCCCTTCTTTTTCEEEEEETTTTBSCCCCSSSHHHHHHHHHHCTT---------------T
T ss_pred             hhhhhcCCCCCCCEEEEEcCCCCCCChhHcCCccccccccCCCCCCCCCCCcHHHHHHHHhccc---------------C
Confidence            46788888899999999999                           67899999999999862               3


Q ss_pred             ecCCCCcEEEEEc
Q 041208           76 EGPLKPEWHLIEY   88 (89)
Q Consensus        76 G~AP~aria~yKv   88 (89)
                      |+||+|+|+.+|+
T Consensus        84 GvAp~a~l~~~kv   96 (284)
T 1sh7_A           84 GVAKNVNIVGVRV   96 (284)
T ss_dssp             CSSTTCEEEEEEC
T ss_pred             CcCCCCEEEEEEe
Confidence            6899999999997

>2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP}

Probab=99.17  E-value=6.2e-12  Score=92.56  Aligned_cols=51  Identities=29%  Similarity=0.313  Sum_probs=45.2

Q ss_pred             CCCcccccCCCCeEEEEecC---------------------------CCCCCCcceeccccCccccccceecccCCceee
Q 041208           23 NSLWNKARFGEDVIIGNIDT---------------------------DFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRK   75 (89)
Q Consensus        23 ~~~w~~~~~G~gviIgVlDT---------------------------D~~GHGTH~a~taaG~~v~~a~~~G~~~~G~a~   75 (89)
                      ...|.....|+||+|+||||                           |+.|||||||++++|+.               .
T Consensus        21 ~~~~~~~~~G~gv~VaViDtGid~~Hpdl~~~~~~~~d~~~~~~~~~d~~gHGT~vAgiia~~~---------------~   85 (278)
T 2b6n_A           21 DNNYHTDYDGSGVTAFVIDTGVLNTHNEFGGRASSGYDFIDNDYDATDCNGHGTHVAGTIGGST---------------Y   85 (278)
T ss_dssp             CSEEECSCCCTTCEEEEEESCCCTTCGGGTTCEEEEEETTTTBSCCCCSSSHHHHHHHHHHCTT---------------T
T ss_pred             chhcccCCCCCCCEEEEEeCCCCCCChhHhcccccCeecCCCCCCCCCCCCcHHHHHHHHHCCC---------------c
Confidence            46788888899999999999                           67899999999999862               3


Q ss_pred             ecCCCCcEEEEEc
Q 041208           76 EGPLKPEWHLIEY   88 (89)
Q Consensus        76 G~AP~aria~yKv   88 (89)
                      |+||+|+|..+|+
T Consensus        86 GvAp~a~i~~~~v   98 (278)
T 2b6n_A           86 GVAKNVNVVGVRV   98 (278)
T ss_dssp             CSSTTCEEEEEEC
T ss_pred             CCCCCCeEEEEEE
Confidence            6899999999997

>3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} SCOP: c.41.1.1 PDB: 3f7o_A

Probab=99.16  E-value=3.5e-12  Score=93.43  Aligned_cols=48  Identities=29%  Similarity=0.344  Sum_probs=41.7

Q ss_pred             CcccccCCCCeEEEEecC------------------------CCCCCCcceeccccCccccccceecccCCceeeecCCC
Q 041208           25 LWNKARFGEDVIIGNIDT------------------------DFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRKEGPLK   80 (89)
Q Consensus        25 ~w~~~~~G~gviIgVlDT------------------------D~~GHGTH~a~taaG~~v~~a~~~G~~~~G~a~G~AP~   80 (89)
                      .|... .|+||+|+||||                        |.+|||||||++++++.               .|+||+
T Consensus        25 ~~~~~-~G~gv~VaViDtGvd~~h~~l~~~~~~~~~~~~~~~d~~gHGT~vAgii~~~~---------------~GvAp~   88 (279)
T 3f7m_A           25 AYDTS-AGAGACVYVIDTGVEDTHPDFEGRAKQIKSYASTARDGHGHGTHCAGTIGSKT---------------WGVAKK   88 (279)
T ss_dssp             EECTT-TTTTEEEEEEESCCCTTCGGGTTCEEEEEECSSSSSCSSSHHHHHHHHHHCTT---------------TCSSTT
T ss_pred             eecCC-CCCCCEEEEEcCCCCCCChhhccccccccCCCCCCCCCCCcHHHHHHHHhcCc---------------cccCCC
Confidence            45544 799999999999                        78899999999998862               469999


Q ss_pred             CcEEEEEc
Q 041208           81 PEWHLIEY   88 (89)
Q Consensus        81 aria~yKv   88 (89)
                      |+|.++|+
T Consensus        89 a~l~~~~v   96 (279)
T 3f7m_A           89 VSIFGVKV   96 (279)
T ss_dssp             CEEEEEEC
T ss_pred             CEEEEEEe
Confidence            99999997

>2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A

Probab=99.16  E-value=9.4e-12  Score=95.52  Aligned_cols=55  Identities=25%  Similarity=0.343  Sum_probs=45.9

Q ss_pred             CCCcccccCCCC--eEEEEecC--------------------------------CCCCCCcceeccccCccccccceecc
Q 041208           23 NSLWNKARFGED--VIIGNIDT--------------------------------DFHGHGTHTLSTVGGSFVKNVSAFGN   68 (89)
Q Consensus        23 ~~~w~~~~~G~g--viIgVlDT--------------------------------D~~GHGTH~a~taaG~~v~~a~~~G~   68 (89)
                      +.+|... .|+|  |+|+||||                                |++|||||||++++|..  +    + 
T Consensus        93 ~~~w~~~-~G~g~~v~VaViDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgiia~~~--n----~-  164 (395)
T 2z2z_A           93 PSVWSIT-DGSVSVIQVAVLDTGVDYDHPDLAANIAWCVSTLRGKVSTKLRDCADQNGHGTHVIGTIAALN--N----D-  164 (395)
T ss_dssp             GGGGGTC-SSCCTTCEEEEEESCBCTTCTTTGGGEEEEEECGGGCCBCCHHHHBCSSSHHHHHHHHHHCCC--S----S-
T ss_pred             HHHHhhc-CCCCCcEEEEEEcCCCCCCChhHhhccccCccccCCcccCCCCCCCCCCCCHHHHHHHHHeec--C----C-
Confidence            4678877 7999  99999999                                67899999999999872  1    1 


Q ss_pred             cCCceeeecCCCCcEEEEEc
Q 041208           69 VGDGQRKEGPLKPEWHLIEY   88 (89)
Q Consensus        69 ~~~G~a~G~AP~aria~yKv   88 (89)
                        .| ..|+||+|+|++||+
T Consensus       165 --~g-~~GvAp~a~l~~~kv  181 (395)
T 2z2z_A          165 --IG-VVGVAPGVQIYSVRV  181 (395)
T ss_dssp             --SS-CCCSSTTCEEEEEEC
T ss_pred             --Cc-eEEECCCCEEEEEEE
Confidence              11 478999999999997

>3zxy_A Subtilisin-like protein; hydrolase; 1.58A {Prochloron didemni} PDB: 3zxx_A

Probab=99.15  E-value=2.4e-12  Score=94.25  Aligned_cols=47  Identities=17%  Similarity=0.141  Sum_probs=38.3

Q ss_pred             CC-CCeEEEEecC-----------------------------CCCCCCcceeccccCccccccceecccCCceeeecCCC
Q 041208           31 FG-EDVIIGNIDT-----------------------------DFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRKEGPLK   80 (89)
Q Consensus        31 ~G-~gviIgVlDT-----------------------------D~~GHGTH~a~taaG~~v~~a~~~G~~~~G~a~G~AP~   80 (89)
                      .| ++|.|+||||                             |.+|||||||++++|+..          + ...|+||+
T Consensus         5 ~G~~gV~VaViDtGid~~Hpdl~g~~~~~~~~~~~~~~~~d~~~~gHGT~VAGiiag~~~----------~-~~~GvAp~   73 (282)
T 3zxy_A            5 KGDHNIRVAILDGPVDIAHPCFQGADLTVLPTLAPTAARSDGFMSAHGTHVASIIFGQPE----------T-SVPGIAPQ   73 (282)
T ss_dssp             CCCTTSEEEEEESCCCTTSGGGTTCEEEECCCSSCCCCCTTCHHHHHHHHHHHHHHCCTT----------S-SSCCSSTT
T ss_pred             cCCCCCEEEEEcCCCCCCChhHCCCeeecCcCCCCCCCCCCCCCCCcccceeehhhccCC----------c-eeeeeccc
Confidence            36 6999999999                             235899999999998731          1 14689999


Q ss_pred             CcEEEEEc
Q 041208           81 PEWHLIEY   88 (89)
Q Consensus        81 aria~yKv   88 (89)
                      |+|.++||
T Consensus        74 a~l~~~kv   81 (282)
T 3zxy_A           74 CRGLIVPI   81 (282)
T ss_dssp             SEEEEEEC
T ss_pred             cceEeeEe
Confidence            99999997

>1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E

Probab=99.14  E-value=8.1e-12  Score=91.98  Aligned_cols=56  Identities=23%  Similarity=0.301  Sum_probs=46.2

Q ss_pred             CCCcccccCCCCeEEEEecC---------------------------CCCCCCcceeccccCccccccceecccCCceee
Q 041208           23 NSLWNKARFGEDVIIGNIDT---------------------------DFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRK   75 (89)
Q Consensus        23 ~~~w~~~~~G~gviIgVlDT---------------------------D~~GHGTH~a~taaG~~v~~a~~~G~~~~G~a~   75 (89)
                      +.+|... .|++|.|+||||                           |.+|||||||+++++....+        .| ..
T Consensus        21 ~~aw~~~-~G~gv~VaViDtGvd~~h~~l~~~~~~~~~~~~~~~~~~d~~gHGT~vAgiia~~~~n~--------~g-~~   90 (279)
T 1thm_A           21 PQAWDIA-EGSGAKIAIVDTGVQSNHPDLAGKVVGGWDFVDNDSTPQNGNGHGTHCAGIAAAVTNNS--------TG-IA   90 (279)
T ss_dssp             HHHHTTC-CCTTCEEEEEESCCCTTCTTTTTTEEEEEETTTTBSCCCCSSSHHHHHHHHHHCCCSSS--------SS-CC
T ss_pred             HHHHhcC-CCCCCEEEEEccCCCCCCcchhcCccccccccCCCCCCCCCCCcHHHHHHHHhCccCCC--------Cc-cE
Confidence            4678776 499999999999                           67899999999999975321        12 46


Q ss_pred             ecCCCCcEEEEEc
Q 041208           76 EGPLKPEWHLIEY   88 (89)
Q Consensus        76 G~AP~aria~yKv   88 (89)
                      |+||+|+|..+|+
T Consensus        91 GvAp~a~l~~~~v  103 (279)
T 1thm_A           91 GTAPKASILAVRV  103 (279)
T ss_dssp             CSSTTCEEEEEEC
T ss_pred             EeCCCCEEEEEEe
Confidence            8999999999997

>2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A*

Probab=99.10  E-value=1.5e-11  Score=97.43  Aligned_cols=57  Identities=18%  Similarity=0.129  Sum_probs=47.2

Q ss_pred             CCCcccccCCCCeEEEEecC--------------------------------CCCCCCcceeccccCccccccceecccC
Q 041208           23 NSLWNKARFGEDVIIGNIDT--------------------------------DFHGHGTHTLSTVGGSFVKNVSAFGNVG   70 (89)
Q Consensus        23 ~~~w~~~~~G~gviIgVlDT--------------------------------D~~GHGTH~a~taaG~~v~~a~~~G~~~   70 (89)
                      ..+|.....|+||+|+||||                                |++|||||||+++++....+        
T Consensus        44 ~~aw~~g~tG~gv~VaViDtGvd~~Hpdl~~~~~~~~~~d~~~~~~~~~p~~d~~gHGT~vAGiiaa~~~n~--------  115 (503)
T 2id4_A           44 LDLWYNNITGAGVVAAIVDDGLDYENEDLKDNFCAEGSWDFNDNTNLPKPRLSDDYHGTRCAGEIAAKKGNN--------  115 (503)
T ss_dssp             HHHHHTTCSCTTCEEEEEESCCCTTSTTTTTTBCGGGCEETTTTBSCCCCCSTTTTHHHHHHHHHHCCSSSS--------
T ss_pred             HHHHhcCCCCCCeEEEEEeCCCCCCChhHhhcccccCcccCCCCCCCCCCCCCCCChHHHHHHHHHhccCCC--------
Confidence            46898888899999999999                                46799999999999874221        


Q ss_pred             CceeeecCCCCcEEEEEc
Q 041208           71 DGQRKEGPLKPEWHLIEY   88 (89)
Q Consensus        71 ~G~a~G~AP~aria~yKv   88 (89)
                      .+ ..|+||+|+|..+|+
T Consensus       116 ~~-~~GvAp~a~i~~~rv  132 (503)
T 2id4_A          116 FC-GVGVGYNAKISGIRI  132 (503)
T ss_dssp             SS-CCCTTTTSEEEEEEC
T ss_pred             CC-cEEECCCCEEEEEEe
Confidence            11 368999999999997

>1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1

Probab=99.10  E-value=1.5e-11  Score=96.42  Aligned_cols=57  Identities=12%  Similarity=0.177  Sum_probs=47.0

Q ss_pred             CCCcccccCCCCeEEEEecC-----------------------------------CCCCCCcceeccccCccccccceec
Q 041208           23 NSLWNKARFGEDVIIGNIDT-----------------------------------DFHGHGTHTLSTVGGSFVKNVSAFG   67 (89)
Q Consensus        23 ~~~w~~~~~G~gviIgVlDT-----------------------------------D~~GHGTH~a~taaG~~v~~a~~~G   67 (89)
                      ..+|.....|+||+|+||||                                   |.+|||||||+++++....+     
T Consensus        28 ~~aw~~g~~G~gv~VaViDtGvd~~Hpdl~~~~~~~~~~d~~~~~~~p~~~~~~~d~~gHGT~vAGiiaa~~~n~-----  102 (471)
T 1p8j_A           28 KEAWAQGFTGHGIVVSILDDGIEKNHPDLAGNYDPGASFDVNDQDPDPQPRYTQMNDNRHGTRCAGEVAAVANNG-----  102 (471)
T ss_dssp             HHHHHTTCSCTTCEEEEEEBCCCTTCTTTGGGBCGGGCEETTTTBSCCCCCCCTTCTTCHHHHHHHHHHCCSSSS-----
T ss_pred             HHHHhcCCCCCCCEEEEEeCCcCCCChhHhhccCccCcccccCCCCCCCCccCCCCCCCcHHHHHHHHHeeccCC-----
Confidence            46898888899999999999                                   34699999999999874221     


Q ss_pred             ccCCceeeecCCCCcEEEEEc
Q 041208           68 NVGDGQRKEGPLKPEWHLIEY   88 (89)
Q Consensus        68 ~~~~G~a~G~AP~aria~yKv   88 (89)
                         .+ ..|+||+|+|+.+|+
T Consensus       103 ---~g-~~GvAp~a~i~~~rv  119 (471)
T 1p8j_A          103 ---VC-GVGVAYNARIGGVRM  119 (471)
T ss_dssp             ---SS-CCCTTTTSEEEEEEC
T ss_pred             ---CC-CEEECCCCeEEEEEc
Confidence               11 478999999999997

>2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ...

Probab=99.06  E-value=2.9e-11  Score=89.48  Aligned_cols=44  Identities=32%  Similarity=0.339  Sum_probs=39.6

Q ss_pred             cCCCCeEEEEecC------------------------CCCCCCcceeccccCccccccceecccCCceeeecCCCCcEEE
Q 041208           30 RFGEDVIIGNIDT------------------------DFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRKEGPLKPEWHL   85 (89)
Q Consensus        30 ~~G~gviIgVlDT------------------------D~~GHGTH~a~taaG~~v~~a~~~G~~~~G~a~G~AP~aria~   85 (89)
                      ..|+||+|+||||                        |++|||||||++++|+.               .|+||+|+|..
T Consensus        28 ~~G~gv~VaViDsGvd~~H~~l~~~~~~~~~~~~~~~d~~gHGT~vAgiia~~~---------------~GvAp~a~i~~   92 (279)
T 2pwa_A           28 SAGQGSCVYVIDTGIEASHPEFEGRAQMVKTYYYSSRDGNGHGTHCAGTVGSRT---------------YGVAKKTQLFG   92 (279)
T ss_dssp             TTTTTEEEEEEESCCCTTCGGGTTCEEEEEESSSCSSCSSSHHHHHHHHHHCTT---------------TCSSTTCEEEE
T ss_pred             CCCCCCEEEEEeCCCCCCChhHhCccccccCCCCCCCCCCCCHHHHHHHHHhcc---------------cccCCCCEEEE
Confidence            5699999999999                        78899999999999861               46899999999


Q ss_pred             EEc
Q 041208           86 IEY   88 (89)
Q Consensus        86 yKv   88 (89)
                      +|+
T Consensus        93 ~~v   95 (279)
T 2pwa_A           93 VKV   95 (279)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            997

>2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli}

Probab=99.04  E-value=8e-12  Score=93.83  Aligned_cols=52  Identities=13%  Similarity=0.053  Sum_probs=43.9

Q ss_pred             CCCcccccCCC--CeEEEEecC-------------------------------CCCCCCcceeccccCccccccceeccc
Q 041208           23 NSLWNKARFGE--DVIIGNIDT-------------------------------DFHGHGTHTLSTVGGSFVKNVSAFGNV   69 (89)
Q Consensus        23 ~~~w~~~~~G~--gviIgVlDT-------------------------------D~~GHGTH~a~taaG~~v~~a~~~G~~   69 (89)
                      +.+|.. ..|+  ||+|+||||                               |+.|||||||++++++       .|  
T Consensus        33 ~~aw~~-~~G~~~gv~VaViDsGid~Hp~l~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgiia~~-------~g--  102 (347)
T 2iy9_A           33 TETTMS-LTDKNTPVVVSVVDSGVAFIGGLSDSEFAKFSFTQDGSPFPVKKSEALYIHGTAMASLIASR-------YG--  102 (347)
T ss_dssp             CHHHHH-TSCTTSCCEEEEEESCCCCCGGGTTCEEEEEECBTTCCSSCCSSSHHHHHHHHHHHHHHHCS-------SS--
T ss_pred             HHHHHH-hcCCCCCCEEEEEcCCCcCChhhhcCcccCCcccCCCCCCCCCCCCCCCCcHHHHHHHHhcc-------cC--
Confidence            467877 6799  999999999                               2457999999999998       23  


Q ss_pred             CCceeeecCCCCcEEEEEc
Q 041208           70 GDGQRKEGPLKPEWHLIEY   88 (89)
Q Consensus        70 ~~G~a~G~AP~aria~yKv   88 (89)
                          ..|+||+|+|.++|+
T Consensus       103 ----~~GvAp~a~l~~~~v  117 (347)
T 2iy9_A          103 ----IYGVYPHALISSRRV  117 (347)
T ss_dssp             ----SCCSSTTCEEEEEEC
T ss_pred             ----CcccCCCCEEEEEEE
Confidence                367999999999997

>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A*

Probab=99.02  E-value=7.8e-11  Score=91.55  Aligned_cols=54  Identities=20%  Similarity=0.257  Sum_probs=43.6

Q ss_pred             CCCcccccCCCCeEEEEecC-----------------------------CCCCCCcceeccccCccccccceecccCCce
Q 041208           23 NSLWNKARFGEDVIIGNIDT-----------------------------DFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQ   73 (89)
Q Consensus        23 ~~~w~~~~~G~gviIgVlDT-----------------------------D~~GHGTH~a~taaG~~v~~a~~~G~~~~G~   73 (89)
                      +.+|...  |++|+|+||||                             |++|||||||+++++...         ..| 
T Consensus        14 ~~~w~~~--g~gv~VaViDtGvd~~Hp~l~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgiia~~~~---------~~g-   81 (441)
T 1y9z_A           14 TVLSDSQ--AGNRTICIIDSGYDRSHNDLNANNVTGTNNSGTGNWYQPGNNNAHGTHVAGTIAAIAN---------NEG-   81 (441)
T ss_dssp             SSSCCTT--GGGCEEEEEESCCCTTSTTTTTSEEEECCCTTSCCTTCCCSSCCHHHHHHHHHHCCCS---------SSB-
T ss_pred             hhhhhcC--CCCcEEEEEcCCCCCCChhHhcCcccCcccCCCCCCCCCCCCCCcHHHHHHHHhcccC---------CCC-
Confidence            4688754  77999999999                             457999999999999741         122 


Q ss_pred             eeecCCCC--cEEEEEc
Q 041208           74 RKEGPLKP--EWHLIEY   88 (89)
Q Consensus        74 a~G~AP~a--ria~yKv   88 (89)
                      ..|+||+|  +|++|||
T Consensus        82 ~~GvAP~a~~~l~~~kv   98 (441)
T 1y9z_A           82 VVGVMPNQNANIHIVKV   98 (441)
T ss_dssp             CCCSSCSSCSEEEEEEC
T ss_pred             ceEecCCCCCEEEEEEE
Confidence            57899995  8999997

>1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A

Probab=99.01  E-value=5e-11  Score=92.18  Aligned_cols=53  Identities=26%  Similarity=0.353  Sum_probs=44.3

Q ss_pred             CCcc-cccCCCCeEEEEecC--------------------------------CCCCCCcceeccccCccccccceecccC
Q 041208           24 SLWN-KARFGEDVIIGNIDT--------------------------------DFHGHGTHTLSTVGGSFVKNVSAFGNVG   70 (89)
Q Consensus        24 ~~w~-~~~~G~gviIgVlDT--------------------------------D~~GHGTH~a~taaG~~v~~a~~~G~~~   70 (89)
                      .+|. ....|+||+|+||||                                |++|||||||++++|+        | . 
T Consensus        12 ~~~~~~g~~G~gv~VaViDtGvd~~~~~~~~hp~l~~~i~~~~~~~~~~~~~d~~gHGT~VAgiiag~--------g-~-   81 (434)
T 1wmd_A           12 VAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHEAFRGKITALYALGRTNNANDTNGHGTHVAGSVLGN--------G-S-   81 (434)
T ss_dssp             HHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCTTTTTCEEEEEETTTTTCCCCSSSHHHHHHHHHHCC--------S-S-
T ss_pred             hhhhccCCCCcccEEEEEecCcCCCCCCcccCcccCCCEeeeccccCCCCCCCCCCcHHHHHHHHHcC--------C-C-
Confidence            5776 466799999999998                                5679999999999985        2 1 


Q ss_pred             CceeeecCCCCcEEEEEc
Q 041208           71 DGQRKEGPLKPEWHLIEY   88 (89)
Q Consensus        71 ~G~a~G~AP~aria~yKv   88 (89)
                       + ..|+||.|+|.++|+
T Consensus        82 -~-~~GvAp~a~l~~~~v   97 (434)
T 1wmd_A           82 -T-NKGMAPQANLVFQSI   97 (434)
T ss_dssp             -S-SCCSSTTSEEEEEEC
T ss_pred             -C-ceeeCCCCEEEEEEe
Confidence             1 468999999999997

>2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens}

Probab=99.01  E-value=3.3e-11  Score=100.42  Aligned_cols=50  Identities=20%  Similarity=0.163  Sum_probs=0.0

Q ss_pred             CCcccccCCCCeEEEEecC----------------------------------CCCCCCcceeccccCccccccceeccc
Q 041208           24 SLWNKARFGEDVIIGNIDT----------------------------------DFHGHGTHTLSTVGGSFVKNVSAFGNV   69 (89)
Q Consensus        24 ~~w~~~~~G~gviIgVlDT----------------------------------D~~GHGTH~a~taaG~~v~~a~~~G~~   69 (89)
                      ..|.....|+||+|+||||                                  |++|||||||+|++|+.          
T Consensus       169 ~~w~~~~~G~GV~VaVIDTGId~~HpdL~gr~~~~~~~~~~d~dg~~~~~~~~D~~GHGTHVAGiIAg~~----------  238 (692)
T 2p4e_P          169 DEYQPPDGGSLVEVYLLDTSIQSDHREIEGRVMVTDFENVPEEDGTRFHRQASKCDSHGTHLAGVVSGRD----------  238 (692)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccCCCCCCcEEEEEcCCCCCCChhhcCceEecccccccCCCCCcccCCCCCCCCcHHHhhhHhhcCC----------
Confidence            3677777899999999999                                  24699999999999862          


Q ss_pred             CCceeeecCCCCcEEEEEc
Q 041208           70 GDGQRKEGPLKPEWHLIEY   88 (89)
Q Consensus        70 ~~G~a~G~AP~aria~yKv   88 (89)
                           .|+||+|+|++|||
T Consensus       239 -----~GVAP~A~L~~vKV  252 (692)
T 2p4e_P          239 -----AGVAKGASMRSLRV  252 (692)
T ss_dssp             -------------------
T ss_pred             -----CccCCCCEEEEEEe
Confidence                 47999999999997

>3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A

Probab=99.00  E-value=6.6e-11  Score=88.28  Aligned_cols=57  Identities=19%  Similarity=0.315  Sum_probs=46.3

Q ss_pred             CCCcccccCCCCeEEEEecC--------------------------C--------------------------------C
Q 041208           23 NSLWNKARFGEDVIIGNIDT--------------------------D--------------------------------F   44 (89)
Q Consensus        23 ~~~w~~~~~G~gviIgVlDT--------------------------D--------------------------------~   44 (89)
                      +.+|.....|+||+|+||||                          |                                .
T Consensus        22 ~~aw~~g~~G~gV~VaViDtGi~~hp~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  101 (340)
T 3lpc_A           22 DKVWDMGFTGQNVVVAVVDTGILHHRDLNANVLPGYDFISNSQISLDGDGRDADPFDEGDWFDNWACGGRPDPRKERSDS  101 (340)
T ss_dssp             HHHHHHTCSCTTCEEEEEESCBCCCTTTGGGBCCCEECCCCHHHHCSSSSSBSCCBCCCCCBCTTTTSCTTCGGGSCBCC
T ss_pred             HHHHHhcCCCCCeEEEEEcCCCCCChhhhcccccCccccCCccccccCCCccCCccccccccccccccCCCCcccCCCCC
Confidence            46899888899999999999                          1                                1


Q ss_pred             CCCCcceeccccCccccccceecccCCceeeecCCCCcEEEEEc
Q 041208           45 HGHGTHTLSTVGGSFVKNVSAFGNVGDGQRKEGPLKPEWHLIEY   88 (89)
Q Consensus        45 ~GHGTH~a~taaG~~v~~a~~~G~~~~G~a~G~AP~aria~yKv   88 (89)
                      +|||||||++++|....+        .| ..|+||.|+|+++|+
T Consensus       102 ~gHGT~vAgiia~~~~~~--------~g-~~GvAp~a~l~~~~v  136 (340)
T 3lpc_A          102 SWHGSHVAGTIAAVTNNR--------IG-VAGVAYGAKVVPVRA  136 (340)
T ss_dssp             CCHHHHHHHHHHCCCSSS--------SS-CCCTTTTSEEEEEEC
T ss_pred             CCCHHHHHHHHHccCCCC--------Cc-ceeecCCCEEEEEEE
Confidence            359999999999975321        12 478999999999997

>1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1

Probab=98.99  E-value=7.3e-11  Score=97.72  Aligned_cols=52  Identities=23%  Similarity=0.325  Sum_probs=43.0

Q ss_pred             cccccCCCCeEEEEecC--------------------------------CCCCCCcceeccccCccccccceecccCCce
Q 041208           26 WNKARFGEDVIIGNIDT--------------------------------DFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQ   73 (89)
Q Consensus        26 w~~~~~G~gviIgVlDT--------------------------------D~~GHGTH~a~taaG~~v~~a~~~G~~~~G~   73 (89)
                      |.. ..|+||+|+||||                                |.+|||||||++++++.  +    +   .| 
T Consensus       148 w~~-~tG~gV~VAVIDTGVd~~HpdL~~~~~~g~~~~~~~~~p~~~d~~d~~gHGThVAGiIAa~~--n----g---~g-  216 (671)
T 1r6v_A          148 WEE-ASGTNIIVAVVDTGVDGTHPDLEGQVIAGYRPAFDEELPAGTDSSYGGSAGTHVAGTIAAKK--D----G---KG-  216 (671)
T ss_dssp             HHH-CSCTTCEEEEEESCCBTTSGGGTTTBCCEEEGGGTEEECTTCBCCTTCSHHHHHHHHHHCCC--S----S---SS-
T ss_pred             hhc-cCCCCCEEEEEeCCCCCCCccccccEEecccccCCCcCCCCCCCccCCCcchhhhhhhhccC--C----C---Cc-
Confidence            776 6799999999999                                24689999999999873  1    1   22 


Q ss_pred             eeecCCCCcEEEEEc
Q 041208           74 RKEGPLKPEWHLIEY   88 (89)
Q Consensus        74 a~G~AP~aria~yKv   88 (89)
                      ..|+||+|+|+++|+
T Consensus       217 v~GVAP~A~I~~vkv  231 (671)
T 1r6v_A          217 IVGVAPGAKIMPIVI  231 (671)
T ss_dssp             CCCSCTTSEEEEEES
T ss_pred             eEEECCCCEEEEEEe
Confidence            478999999999997

>2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A

Probab=98.92  E-value=1.6e-10  Score=94.18  Aligned_cols=50  Identities=20%  Similarity=0.163  Sum_probs=38.3

Q ss_pred             CCcccccCCCCeEEEEecC----------------------------------CCCCCCcceeccccCccccccceeccc
Q 041208           24 SLWNKARFGEDVIIGNIDT----------------------------------DFHGHGTHTLSTVGGSFVKNVSAFGNV   69 (89)
Q Consensus        24 ~~w~~~~~G~gviIgVlDT----------------------------------D~~GHGTH~a~taaG~~v~~a~~~G~~   69 (89)
                      ..|.....|+||+|+||||                                  |.+|||||||+|++|+.          
T Consensus        17 ~aw~~~~tG~GV~VaVIDTGId~~HpdL~gr~~~~~~~~v~~~dg~~f~~~~~D~~GHGThVAGIIag~~----------   86 (546)
T 2qtw_B           17 DEYQPPDGGSLVEVYLLDTSIQSDHREIEGRVMVTDFENVPEEDGTRFHRQASKCDSHGTHLAGVVSGRD----------   86 (546)
T ss_dssp             -------CCTTSEEEEEESCCCTTSTTTTTTEEEEEEECCCCCC-------CTTTTHHHHHHHHHHHCTT----------
T ss_pred             hhcccCCCCCCcEEEEECCCCCCCChHHcccccccCcccccCCCCccccCCCCCCCChHHHHHHHHhccC----------
Confidence            3677777899999999999                                  34689999999999872          


Q ss_pred             CCceeeecCCCCcEEEEEc
Q 041208           70 GDGQRKEGPLKPEWHLIEY   88 (89)
Q Consensus        70 ~~G~a~G~AP~aria~yKv   88 (89)
                           .|+||+|+|++|||
T Consensus        87 -----~GVAP~A~L~~vkV  100 (546)
T 2qtw_B           87 -----AGVAKGASMRSLRV  100 (546)
T ss_dssp             -----TCSSTTCEEEEEEC
T ss_pred             -----CCcCCCCEEEEEEE
Confidence                 46899999999997

>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}

Probab=98.46  E-value=2.5e-08  Score=88.13  Aligned_cols=36  Identities=17%  Similarity=0.088  Sum_probs=29.0

Q ss_pred             CCCCCCcceeccccCccccccceecccCCceeeecCCCCcEEEEEc
Q 041208           43 DFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRKEGPLKPEWHLIEY   88 (89)
Q Consensus        43 D~~GHGTH~a~taaG~~v~~a~~~G~~~~G~a~G~AP~aria~yKv   88 (89)
                      |++||||||||+++|.. .+   .|      ..|+||.|+|+++|+
T Consensus       268 D~~GHGThVAGIIAa~~-N~---~g------~~GVAP~AkI~~vKV  303 (1354)
T 3lxu_X          268 MSSPHGTHVSSIASGNH-SS---RD------VDGVAPNAKIVSMTI  303 (1354)
T ss_dssp             CCCHHHHHHHHHHCCCC-SS---SS------SCCSCTTCEEEEEEC
T ss_pred             CCCCcHHHHHHHHhcCC-CC---CC------ceeecCCCEEEEEEe
Confidence            34699999999999985 21   11      478999999999997

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	89
d2ixta1	309	Sphericase {Bacillus sphaericus [TaxId: 1421]}	99.31
d1dbia_	280	Thermostable serine protease {Bacillus sp., AK.1 [	99.25
d1v6ca_	435	Alkaline serine protease Apa1 {Pseudoalteromonas s	99.2
d2pwaa1	279	Proteinase K {Fungus (Tritirachium album), strain	99.19
d1thma_	279	Thermitase {Thermoactinomyces vulgaris [TaxId: 202	99.18
d1r0re_	274	Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1	99.17
d1to2e_	281	Subtilisin {Bacillus amyloliquefaciens, Novo/BPN'	99.14
d1gcia_	269	Subtilisin {Bacillus lentus [TaxId: 1467]}	99.13
d1p8ja2	334	Furin, N-terminal domain {Mouse (Mus musculus) [Ta	99.1
d1r6va_	671	Fervidolysin {Fervidobacterium pennivorans [TaxId:	99.07
d1wmda2	318	Alkaline serine protease kp-43, N-terminal domain	99.06
d2id4a2	339	Kexin, N-terminal domain {Baker's yeast (Saccharom	98.95
d1t1ga_	357	Serine-carboxyl proteinase, SCP {Bacillus novosp.	98.36
d1ga6a_	369	Serine-carboxyl proteinase, SCP {Pseudomonas sp.,	97.18

>d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Sphericase
species: Bacillus sphaericus [TaxId: 1421]

Probab=99.31  E-value=2.6e-13  Score=96.40  Aligned_cols=58  Identities=21%  Similarity=0.176  Sum_probs=48.4

Q ss_pred             CCCcccccCCCCeEEEEecC-------------------------------CCCCCCcceeccccCccccccceecccCC
Q 041208           23 NSLWNKARFGEDVIIGNIDT-------------------------------DFHGHGTHTLSTVGGSFVKNVSAFGNVGD   71 (89)
Q Consensus        23 ~~~w~~~~~G~gviIgVlDT-------------------------------D~~GHGTH~a~taaG~~v~~a~~~G~~~~   71 (89)
                      +.+|.....|+||+|+||||                               |.+|||||||++++|....+        .
T Consensus        16 ~~aw~~~~~G~gv~V~ViDsGv~~~Hp~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~VAgiiaa~~~~~--------~   87 (309)
T d2ixta1          16 NDTLTSTTGGSGINIAVLDTGVNTSHPDLVNNVEQCKDFTGATTPINNSCTDRNGHGTHVAGTALADGGSD--------Q   87 (309)
T ss_dssp             CTTCCCCCCCTTCEEEEEESCCCTTCTTTTTTEEEEEESSSSSSCEETCCCCSSSHHHHHHHHHHCBCCTT--------S
T ss_pred             hhhhccCCCCCCeEEEEEccCCCCCChhHhccccccccccCCCCCCCCCcccccccccccccccccccccc--------c
Confidence            57899888999999999999                               67889999999999875322        2


Q ss_pred             ceeeecCCCCcEEEEEc
Q 041208           72 GQRKEGPLKPEWHLIEY   88 (89)
Q Consensus        72 G~a~G~AP~aria~yKv   88 (89)
                      ....|+||.|+|..+|+
T Consensus        88 ~~~~GvAp~a~l~~~~~  104 (309)
T d2ixta1          88 AGIYGVAPDADLWAYKV  104 (309)
T ss_dssp             CSCBCSCTTSEEEEEEC
T ss_pred             hhhhhhhhhccceeeee
Confidence            22478999999999986

>d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Thermostable serine protease
species: Bacillus sp., AK.1 [TaxId: 1409]

Probab=99.25  E-value=6.3e-13  Score=95.56  Aligned_cols=58  Identities=17%  Similarity=0.189  Sum_probs=49.2

Q ss_pred             CCCcccccCCCCeEEEEecC---------------------------CCCCCCcceeccccCccccccceecccCCceee
Q 041208           23 NSLWNKARFGEDVIIGNIDT---------------------------DFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRK   75 (89)
Q Consensus        23 ~~~w~~~~~G~gviIgVlDT---------------------------D~~GHGTH~a~taaG~~v~~a~~~G~~~~G~a~   75 (89)
                      +.+|.....|+||+|+||||                           |.+||||||++++++....         .+..+
T Consensus        21 ~~aw~~~~~G~gv~VaviDsGi~~~h~~l~~~~~~~~~~~~~~~~~~d~~~HGT~vag~i~~~~~~---------~~~~~   91 (280)
T d1dbia_          21 DYAWDVTKGSSGQEIAVIDTGVDYTHPDLDGKVIKGYDFVDNDYDPMDLNNHGTHVAGIAAAETNN---------ATGIA   91 (280)
T ss_dssp             HHHTTTCCCCTTCEEEEEESCCCTTSTTTTTTEEEEEETTTTBSCCCCSSSHHHHHHHHHHCCCSS---------SSSCC
T ss_pred             HHHHhccCCCCCeEEEEEccCcCCCChhhcCCeeecccccCCCCccccccccccceeEeeeccccC---------CCcee
Confidence            57899998899999999999                           7889999999999987421         23357


Q ss_pred             ecCCCCcEEEEEcC
Q 041208           76 EGPLKPEWHLIEYA   89 (89)
Q Consensus        76 G~AP~aria~yKv~   89 (89)
                      |+||.|+|.++|+.
T Consensus        92 GvAp~a~l~~~~v~  105 (280)
T d1dbia_          92 GMAPNTRILAVRAL  105 (280)
T ss_dssp             CSSSSCEEEEEECC
T ss_pred             EEeccCEEEEEEEe
Confidence            89999999999973

>d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Alkaline serine protease Apa1
species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]

Probab=99.20  E-value=1.6e-12  Score=97.50  Aligned_cols=48  Identities=21%  Similarity=0.258  Sum_probs=40.1

Q ss_pred             CCCCeEEEEecC-----------------------------CCCCCCcceeccccCccccccceecccCCceeeecCC--
Q 041208           31 FGEDVIIGNIDT-----------------------------DFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRKEGPL--   79 (89)
Q Consensus        31 ~G~gviIgVlDT-----------------------------D~~GHGTH~a~taaG~~v~~a~~~G~~~~G~a~G~AP--   79 (89)
                      .|+||+|+||||                             |++|||||||+|++|+..         ..| ..|+||  
T Consensus        20 ~G~gv~VaviDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~d~~gHGThvAgiiag~~~---------~~g-~~GvAp~~   89 (435)
T d1v6ca_          20 QAGNRTICIIDSGYDRSHNDLNANNVTGTNNSGTGNWYQPGNNNAHGTHVAGTIAAIAN---------NEG-VVGVMPNQ   89 (435)
T ss_dssp             TGGGCEEEEEESCCCTTSTTTTTSEEEECCCTTSCCTTCCCSSCCHHHHHHHHHHCCCS---------SSB-CCCSSCSS
T ss_pred             CCCCcEEEEEcCCCCCCChhhccCeeeeeccCCCCCCCCCCCCCCcHHHHHHHHhccCC---------CCc-eEEEeccc
Confidence            599999999999                             778999999999999741         112 468999  


Q ss_pred             CCcEEEEEc
Q 041208           80 KPEWHLIEY   88 (89)
Q Consensus        80 ~aria~yKv   88 (89)
                      +++|.+||+
T Consensus        90 ~~~l~~~~~   98 (435)
T d1v6ca_          90 NANIHIVKV   98 (435)
T ss_dssp             CSEEEEEEC
T ss_pred             Cceeeeeec
Confidence            889999986

>d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Proteinase K
species: Fungus (Tritirachium album), strain limber [TaxId: 37998]

Probab=99.19  E-value=1.8e-12  Score=92.39  Aligned_cols=51  Identities=27%  Similarity=0.329  Sum_probs=43.3

Q ss_pred             CCCcccccCCCCeEEEEecC------------------------CCCCCCcceeccccCccccccceecccCCceeeecC
Q 041208           23 NSLWNKARFGEDVIIGNIDT------------------------DFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRKEGP   78 (89)
Q Consensus        23 ~~~w~~~~~G~gviIgVlDT------------------------D~~GHGTH~a~taaG~~v~~a~~~G~~~~G~a~G~A   78 (89)
                      ..+|.+...|+||.|+||||                        |.+|||||||++++|+.               .|+|
T Consensus        21 ~~~~~~~~tG~Gv~VaViDsGid~~Hpdf~g~~~~~~~~~~~~~d~~gHGT~VAgiia~~~---------------~G~a   85 (279)
T d2pwaa1          21 STYYYDESAGQGSCVYVIDTGIEASHPEFEGRAQMVKTYYYSSRDGNGHGTHCAGTVGSRT---------------YGVA   85 (279)
T ss_dssp             CCEECCTTTTTTEEEEEEESCCCTTCGGGTTCEEEEEESSSCSSCSSSHHHHHHHHHHCTT---------------TCSS
T ss_pred             CcceecCCCCCCeEEEEECcCCCCCChhhcCCceeccCCCCCcccccCccccccccccccc---------------cccC
Confidence            45555566799999999999                        88899999999998762               3689


Q ss_pred             CCCcEEEEEc
Q 041208           79 LKPEWHLIEY   88 (89)
Q Consensus        79 P~aria~yKv   88 (89)
                      |.++|..+|+
T Consensus        86 ~~a~l~~~~v   95 (279)
T d2pwaa1          86 KKTQLFGVKV   95 (279)
T ss_dssp             TTCEEEEEEC
T ss_pred             CCccccceee
Confidence            9999999997

>d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Thermitase
species: Thermoactinomyces vulgaris [TaxId: 2026]

Probab=99.18  E-value=2.2e-12  Score=91.50  Aligned_cols=56  Identities=21%  Similarity=0.247  Sum_probs=46.7

Q ss_pred             CCCcccccCCCCeEEEEecC---------------------------CCCCCCcceeccccCccccccceecccCCceee
Q 041208           23 NSLWNKARFGEDVIIGNIDT---------------------------DFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRK   75 (89)
Q Consensus        23 ~~~w~~~~~G~gviIgVlDT---------------------------D~~GHGTH~a~taaG~~v~~a~~~G~~~~G~a~   75 (89)
                      +.+|... .|+||.|+||||                           |..+|||||++++++....         ....+
T Consensus        21 ~~aw~~~-tG~Gv~VaViDsGi~~~H~~~~~~~~~~~~~~~~~~~~~d~~~HGT~vag~i~~~~~~---------~~~~~   90 (279)
T d1thma_          21 PQAWDIA-EGSGAKIAIVDTGVQSNHPDLAGKVVGGWDFVDNDSTPQNGNGHGTHCAGIAAAVTNN---------STGIA   90 (279)
T ss_dssp             HHHHTTC-CCTTCEEEEEESCCCTTCTTTTTTEEEEEETTTTBSCCCCSSSHHHHHHHHHHCCCSS---------SSSCC
T ss_pred             HHHHhcc-CCCCcEEEEEcCCCCCCChhhcCCeeccccccccCcccccccccccccceeeeeccCC---------Ccccc
Confidence            4678776 699999999999                           7789999999999987422         22357


Q ss_pred             ecCCCCcEEEEEc
Q 041208           76 EGPLKPEWHLIEY   88 (89)
Q Consensus        76 G~AP~aria~yKv   88 (89)
                      |+||.|+|..+|+
T Consensus        91 GvAp~a~l~~~~v  103 (279)
T d1thma_          91 GTAPKASILAVRV  103 (279)
T ss_dssp             CSSTTCEEEEEEC
T ss_pred             ccCCcceEEEEEE
Confidence            8999999999997

>d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Subtilisin
species: Bacillus subtilis, carlsberg [TaxId: 1423]

Probab=99.17  E-value=1.1e-12  Score=92.83  Aligned_cols=55  Identities=24%  Similarity=0.211  Sum_probs=46.4

Q ss_pred             CCcccccCCCCeEEEEecC-------------------------CCCCCCcceeccccCccccccceecccCCceeeecC
Q 041208           24 SLWNKARFGEDVIIGNIDT-------------------------DFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRKEGP   78 (89)
Q Consensus        24 ~~w~~~~~G~gviIgVlDT-------------------------D~~GHGTH~a~taaG~~v~~a~~~G~~~~G~a~G~A   78 (89)
                      .+|.....|+||.|+||||                         |.+|||||||+++++...         ..+ ..|+|
T Consensus        15 ~~~~~g~tG~gv~VaViDtGv~~~Hp~l~~~~~~~~~~~~~~~~d~~gHGT~vAgii~~~~~---------~~~-~~gva   84 (274)
T d1r0re_          15 KVQAQGFKGANVKVAVLDTGIQASHPDLNVVGGASFVAGEAYNTDGNGHGTHVAGTVAALDN---------TTG-VLGVA   84 (274)
T ss_dssp             HHHHHTCSCTTCEEEEEESCCCTTCTTCCEEEEEECSTTCCTTCCSSSHHHHHHHHHHCCSS---------SSB-CCCSS
T ss_pred             HHHHcCCCCCCeEEEEECCCCCCCChhhcccCCccccCCCCCCCCccccccccccccccccc---------ccc-ccccC
Confidence            5788887899999999999                         778999999999988742         122 36799


Q ss_pred             CCCcEEEEEc
Q 041208           79 LKPEWHLIEY   88 (89)
Q Consensus        79 P~aria~yKv   88 (89)
                      |.|+|+.+|+
T Consensus        85 p~a~i~~~~~   94 (274)
T d1r0re_          85 PSVSLYAVKV   94 (274)
T ss_dssp             TTSEEEEEEC
T ss_pred             CCcEEEEEEE
Confidence            9999999986

>d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Subtilisin
species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]

Probab=99.14  E-value=3.4e-12  Score=90.78  Aligned_cols=56  Identities=21%  Similarity=0.188  Sum_probs=47.0

Q ss_pred             CCCcccccCCCCeEEEEecC--------------------------CCCCCCcceeccccCccccccceecccCCceeee
Q 041208           23 NSLWNKARFGEDVIIGNIDT--------------------------DFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRKE   76 (89)
Q Consensus        23 ~~~w~~~~~G~gviIgVlDT--------------------------D~~GHGTH~a~taaG~~v~~a~~~G~~~~G~a~G   76 (89)
                      +.+|.+...|+||.|+||||                          ++++||||||++++|....          ....|
T Consensus        14 ~~aw~~g~tG~Gv~IaviDtGv~~~Hp~l~~~~~~~~~~~~~~~~~~~~~HGT~vAgiiag~~~~----------~~~~g   83 (281)
T d1to2e_          14 PALHSQGYTGSNVKVAVIDSGIDSSHPDLKVAGGASMVPSETNPFQDNNSHGTHVAGTVAALNNS----------IGVLG   83 (281)
T ss_dssp             HHHHHHTCSCTTCEEEEEESCCCTTCTTCCEEEEEECCTTCCCTTCCSSSHHHHHHHHHHCCSSS----------SSBCC
T ss_pred             HHHHHCCCCCCCeEEEEECCCCCCCChhhhhcCCccccCCCCCCCcCcCCCCceeecccccCCCC----------CCcce
Confidence            46898888899999999999                          4679999999999987421          11468


Q ss_pred             cCCCCcEEEEEc
Q 041208           77 GPLKPEWHLIEY   88 (89)
Q Consensus        77 ~AP~aria~yKv   88 (89)
                      +||.|+|..||+
T Consensus        84 iAp~a~l~~~kv   95 (281)
T d1to2e_          84 VAPSASLYAVKV   95 (281)
T ss_dssp             SSTTSEEEEEEC
T ss_pred             eecccEEEEEEE
Confidence            999999999997

>d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Subtilisin
species: Bacillus lentus [TaxId: 1467]

Probab=99.13  E-value=4.8e-12  Score=89.69  Aligned_cols=56  Identities=23%  Similarity=0.211  Sum_probs=47.1

Q ss_pred             CCCcccccCCCCeEEEEecC------------------------CCCCCCcceeccccCccccccceecccCCceeeecC
Q 041208           23 NSLWNKARFGEDVIIGNIDT------------------------DFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRKEGP   78 (89)
Q Consensus        23 ~~~w~~~~~G~gviIgVlDT------------------------D~~GHGTH~a~taaG~~v~~a~~~G~~~~G~a~G~A   78 (89)
                      +.+|.....|+||.|+||||                        |.+|||||||+++++...          .+...|+|
T Consensus        14 ~~aw~~g~tG~gv~V~ViDsGv~~h~~l~~~~~~~~~~~~~~~~d~~~HGT~vAgii~~~~~----------~~~~~gia   83 (269)
T d1gcia_          14 PAAHNRGLTGSGVKVAVLDTGISTHPDLNIRGGASFVPGEPSTQDGNGHGTHVAGTIAALNN----------SIGVLGVA   83 (269)
T ss_dssp             HHHHHTTCSCTTCEEEEEESCCCCCTTCCEEEEEECSTTCCSCSCSSSHHHHHHHHHHCCCS----------SSBCCCSS
T ss_pred             HHHHhCCCCCCCeEEEEECCCCCCCcccCccccccccCCCCCccccchhhheecccccccCC----------CccccccC
Confidence            36898888899999999998                        778999999999987742          12246899


Q ss_pred             CCCcEEEEEc
Q 041208           79 LKPEWHLIEY   88 (89)
Q Consensus        79 P~aria~yKv   88 (89)
                      |.|+|..+|+
T Consensus        84 p~a~i~~~~v   93 (269)
T d1gcia_          84 PSAELYAVKV   93 (269)
T ss_dssp             TTCEEEEEEC
T ss_pred             CceEEEEEEE
Confidence            9999999996

>d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Furin, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.10  E-value=7.9e-12  Score=89.05  Aligned_cols=57  Identities=12%  Similarity=0.175  Sum_probs=47.2

Q ss_pred             CCCcccccCCCCeEEEEecC-----------------------------------CCCCCCcceeccccCccccccceec
Q 041208           23 NSLWNKARFGEDVIIGNIDT-----------------------------------DFHGHGTHTLSTVGGSFVKNVSAFG   67 (89)
Q Consensus        23 ~~~w~~~~~G~gviIgVlDT-----------------------------------D~~GHGTH~a~taaG~~v~~a~~~G   67 (89)
                      +.+|.....|+||+|+||||                                   |++|||||||+++++....+     
T Consensus        27 ~~aw~~g~~G~gv~VaViDtGv~~~Hpdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gHGT~vAgiia~~~~n~-----  101 (334)
T d1p8ja2          27 KEAWAQGFTGHGIVVSILDDGIEKNHPDLAGNYDPGASFDVNDQDPDPQPRYTQMNDNRHGTRCAGEVAAVANNG-----  101 (334)
T ss_dssp             HHHHHTTCSCTTCEEEEEEBCCCTTCTTTGGGBCGGGCEETTTTBSCCCCCCCTTCTTCHHHHHHHHHHCCSSSS-----
T ss_pred             HHHHhcCCCCCCeEEEEEccCCCCCChhHhhccccCCCccccCCCCccccccccccCccchhhhhhhhhhccccc-----
Confidence            46899888999999999999                                   56799999999999875321     


Q ss_pred             ccCCceeeecCCCCcEEEEEc
Q 041208           68 NVGDGQRKEGPLKPEWHLIEY   88 (89)
Q Consensus        68 ~~~~G~a~G~AP~aria~yKv   88 (89)
                         . ...|+||.+++..||+
T Consensus       102 ---~-~~~g~a~~a~~~~~~~  118 (334)
T d1p8ja2         102 ---V-CGVGVAYNARIGGVRM  118 (334)
T ss_dssp             ---S-SCCCTTTTSEEEEEEC
T ss_pred             ---c-ccccccccccccchhh
Confidence               1 1367999999999997

>d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Fervidolysin
species: Fervidobacterium pennivorans [TaxId: 93466]

Probab=99.07  E-value=1e-11  Score=99.48  Aligned_cols=51  Identities=22%  Similarity=0.199  Sum_probs=42.0

Q ss_pred             cccCCCCeEEEEecC--------------------------------CCCCCCcceeccccCccccccceecccCCceee
Q 041208           28 KARFGEDVIIGNIDT--------------------------------DFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRK   75 (89)
Q Consensus        28 ~~~~G~gviIgVlDT--------------------------------D~~GHGTH~a~taaG~~v~~a~~~G~~~~G~a~   75 (89)
                      +...|+||+|+||||                                |..|||||||++++++..         ..| ..
T Consensus       149 ~~~tG~gV~VaViDtGvd~~Hpdl~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~VAGiiaa~~~---------~~g-~~  218 (671)
T d1r6va_         149 EEASGTNIIVAVVDTGVDGTHPDLEGQVIAGYRPAFDEELPAGTDSSYGGSAGTHVAGTIAAKKD---------GKG-IV  218 (671)
T ss_dssp             HHCSCTTCEEEEEESCCBTTSGGGTTTBCCEEEGGGTEEECTTCBCCTTCSHHHHHHHHHHCCCS---------SSS-CC
T ss_pred             hcCCCCCCEEEEEcCCcCCCChhhcCCcccCccccccCCCCCCCcCcccCCCCccccceeeeecc---------ccc-ee
Confidence            345699999999999                                567899999999998731         122 46


Q ss_pred             ecCCCCcEEEEEc
Q 041208           76 EGPLKPEWHLIEY   88 (89)
Q Consensus        76 G~AP~aria~yKv   88 (89)
                      |+||.|+|+++||
T Consensus       219 GvAp~a~l~~~rv  231 (671)
T d1r6va_         219 GVAPGAKIMPIVI  231 (671)
T ss_dssp             CSCTTSEEEEEES
T ss_pred             eecCcceEEEEEe
Confidence            8999999999997

>d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Alkaline serine protease kp-43, N-terminal domain
species: Bacillus sp. KSM-KP43 [TaxId: 109322]

Probab=99.06  E-value=1.5e-11  Score=87.27  Aligned_cols=52  Identities=25%  Similarity=0.312  Sum_probs=42.7

Q ss_pred             Cccc-ccCCCCeEEEEecC--------------------------------CCCCCCcceeccccCccccccceecccCC
Q 041208           25 LWNK-ARFGEDVIIGNIDT--------------------------------DFHGHGTHTLSTVGGSFVKNVSAFGNVGD   71 (89)
Q Consensus        25 ~w~~-~~~G~gviIgVlDT--------------------------------D~~GHGTH~a~taaG~~v~~a~~~G~~~~   71 (89)
                      +|.+ ...|+||+|+||||                                |..|||||||++++|+..        .  
T Consensus        13 ~~~~~G~tG~Gv~VaIiDsGi~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgiiag~~~--------~--   82 (318)
T d1wmda2          13 AQSSYGLYGQGQIVAVADTGLDTGRNDSSMHEAFRGKITALYALGRTNNANDTNGHGTHVAGSVLGNGS--------T--   82 (318)
T ss_dssp             HHHHHCCSCTTCEEEEEESCCTTSCSSTTSCTTTTTCEEEEEETTTTTCCCCSSSHHHHHHHHHHCCSS--------S--
T ss_pred             HHHccCccccCeEEEEEcCCcCCCCcccccCcccCCcEEeecCCCCCCCCCCCCCCCccceeecccccc--------c--
Confidence            3443 55699999999998                                788999999999998621        1  


Q ss_pred             ceeeecCCCCcEEEEEc
Q 041208           72 GQRKEGPLKPEWHLIEY   88 (89)
Q Consensus        72 G~a~G~AP~aria~yKv   88 (89)
                        ..|+||.|+|..||+
T Consensus        83 --~~GvAp~a~l~~~~v   97 (318)
T d1wmda2          83 --NKGMAPQANLVFQSI   97 (318)
T ss_dssp             --SCCSSTTSEEEEEEC
T ss_pred             --cchhhhcccceeeee
Confidence              268999999999997

>d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Kexin, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.95  E-value=6.6e-11  Score=84.69  Aligned_cols=57  Identities=18%  Similarity=0.123  Sum_probs=47.1

Q ss_pred             CCCcccccCCCCeEEEEecC--------------------------------CCCCCCcceeccccCccccccceecccC
Q 041208           23 NSLWNKARFGEDVIIGNIDT--------------------------------DFHGHGTHTLSTVGGSFVKNVSAFGNVG   70 (89)
Q Consensus        23 ~~~w~~~~~G~gviIgVlDT--------------------------------D~~GHGTH~a~taaG~~v~~a~~~G~~~   70 (89)
                      +.+|.....|+||+|+||||                                |+.+||||++++++++...+        
T Consensus        36 ~~aw~~g~~G~gv~VaViDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~HGT~vag~iaa~~~~~--------  107 (339)
T d2id4a2          36 LDLWYNNITGAGVVAAIVDDGLDYENEDLKDNFCAEGSWDFNDNTNLPKPRLSDDYHGTRCAGEIAAKKGNN--------  107 (339)
T ss_dssp             HHHHHTTCSCTTCEEEEEESCCCTTSTTTTTTBCGGGCEETTTTBSCCCCCSTTTTHHHHHHHHHHCCSSSS--------
T ss_pred             HHHHhcCCCCCCcEEEEECcCcCCCChHHhcCcccccccccccCCCccCCCcccccccceeeeccccccccc--------
Confidence            46898888899999999999                                56689999999999874322        


Q ss_pred             CceeeecCCCCcEEEEEc
Q 041208           71 DGQRKEGPLKPEWHLIEY   88 (89)
Q Consensus        71 ~G~a~G~AP~aria~yKv   88 (89)
                       ....|+||.++|+.||+
T Consensus       108 -~~~~Gvap~a~~~~~~~  124 (339)
T d2id4a2         108 -FCGVGVGYNAKISGIRI  124 (339)
T ss_dssp             -SSCCCTTTTSEEEEEEC
T ss_pred             -ccccccccccccceEEE
Confidence             12468999999999986

>d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Serine-carboxyl proteinase, SCP
domain: Serine-carboxyl proteinase, SCP
species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]

Probab=98.36  E-value=4.6e-08  Score=69.19  Aligned_cols=55  Identities=9%  Similarity=-0.134  Sum_probs=42.5

Q ss_pred             ccCCCCeEEEEecC--------------------------CCCCCCcceeccccCccccccceecccCCceeeecCCCCc
Q 041208           29 ARFGEDVIIGNIDT--------------------------DFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRKEGPLKPE   82 (89)
Q Consensus        29 ~~~G~gviIgVlDT--------------------------D~~GHGTH~a~taaG~~v~~a~~~G~~~~G~a~G~AP~ar   82 (89)
                      ...|+||+|+||||                          |.+||++|+++++++.....+ ..+    ..+.|+||.|+
T Consensus        20 G~tG~Gv~VaViDtGvd~~H~dl~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~-~d~----~~~~GvAp~A~   94 (357)
T d1t1ga_          20 GLDGQGQCIAIIALGGGYDETSLAQYFASLGVSAPQVVSVSVDGATNQPTGDPNGPDGEVE-LDI----EVAGALAPGAK   94 (357)
T ss_dssp             TCCCTTCEEEEEESSCCCCHHHHHHHHHHTTCCCCCEEEEESTTCCCCCCSCTTSTHHHHH-HHH----HHHHHHSTTSE
T ss_pred             CCCCCCCEEEEEEcCCCCCcHHHHHHHhhcCCCCCCCceeCCCCCCCCCCCcccccccccc-CCc----ccceeecccCe
Confidence            44699999999999                          678999999999887654321 111    12478999999


Q ss_pred             EEEEEc
Q 041208           83 WHLIEY   88 (89)
Q Consensus        83 ia~yKv   88 (89)
                      |..+|+
T Consensus        95 i~~~~~  100 (357)
T d1t1ga_          95 IAVYFA  100 (357)
T ss_dssp             EEEEEC
T ss_pred             EEEEec
Confidence            999987

>d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Serine-carboxyl proteinase, SCP
domain: Serine-carboxyl proteinase, SCP
species: Pseudomonas sp., sedolisin [TaxId: 306]

Probab=97.18  E-value=1.6e-05  Score=57.49  Aligned_cols=48  Identities=8%  Similarity=-0.050  Sum_probs=36.7

Q ss_pred             CCCCeEEEEecC-------------------------------CCCCCCcceeccccCccccccceecccCCceeeecCC
Q 041208           31 FGEDVIIGNIDT-------------------------------DFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRKEGPL   79 (89)
Q Consensus        31 ~G~gviIgVlDT-------------------------------D~~GHGTH~a~taaG~~v~~a~~~G~~~~G~a~G~AP   79 (89)
                      .|+||.|+|||+                               +..+|+||++++.......          -...|+||
T Consensus        23 tG~gvtVaIid~G~~~~~~~Dl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ld~----------~~~~gvAp   92 (369)
T d1ga6a_          23 TAANTTVGIITIGGVSQTLQDLQQFTSANGLASVNTQTIQTGSSNGDYSDDQQGQGEWDLDS----------QSIVGSAG   92 (369)
T ss_dssp             CEEEEEEEEEEESBCHHHHHHHHHHHHHTTCCCCCEEEEECSCTTSCCCBCHHHHHHHHHHH----------HHHHHHTT
T ss_pred             CCCCcEEEEEecCCcccCHHHHHHHHHhcCCCCCCCCeecCCCCCCCCCCCCCcceeecccc----------cccccccc
Confidence            589999999998                               5567999998777654311          11357999


Q ss_pred             CCcEEEEEc
Q 041208           80 KPEWHLIEY   88 (89)
Q Consensus        80 ~aria~yKv   88 (89)
                      .|+|.++|+
T Consensus        93 ~a~~~~~~~  101 (369)
T d1ga6a_          93 GAVQQLLFY  101 (369)
T ss_dssp             SCEEEEEEE
T ss_pred             CceEEEEEE
Confidence            999999986