Citrus Sinensis ID: 041224

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400
MRELLIIILILSMAIWGSSFQPCEAFPSYASSVSVIQFGAVGDGETDDSQAFLKAWKSICGSKSNAAPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQGNIVAPHSSAWDGHDKKKWLLFSNVNGLTVNGNGKIDGKGASWWSNKQNQRPTALSFGSCNNLVFRGLTHVDSPGNHISVYGCNDVSISNLKIIAPESSPNTDGIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGSLGANGGTSIVEDVHVRDCTFKGTKNGARIKTWQGGSGHARRISFERIRLESSDNPIIIDQYYCGPNGDCKNQTSAVKVSDVSYIGFQGTSSTEEAVQLSCSESVGCTDIKINNIDITHSDSGKDTRASCINAHGELYGQLVPSVDCLLP
cHHHHHHHHHHHHHHHHccccccccccccccEEEEcccccccccccccHHHHHHHHHHHHccccccEEEEEccccEEEEEEEEEEcccccccEEEEEEEEEEccccccccccccccEEEEEEEccEEEEEcEEEEccccccccccccccccEEEEEEEccEEEEcEEEEcccccEEEEEEEEEEEEEEEEEEccccccccccEEccccccEEEEEcEEEccccEEEEccccEEEEEEEEEEcccccEEEEEEccccccccEEEEEEEEEEEEccccEEEEEEcccccEEEEEEEEEEEEEEcccccEEEEEEEcccccccccccccEEEEEEEEEEEEEEEcccccEEEEccccccEEcEEEEEEEEEEccccccccEEEEEEEEEEccEEccccccccc
cHHHHHHHHHHHHHHHHccccccccccccccEEEEHccccccccccccHHHHHHHHHHHHccccccEEEEEccccEEEEEEEEEEcccccccEEEEEEEEEEcccccccccccccEEEEEEEEcEEEEEEcEEEcccccHHHccccccccEEEEEEEcccEEEEEEEEEccccEEEEEEcccEEEEEEEEEEccccccccccEEEEccccEEEEEEEEcccccEEEEcccccEEEEEEEEEcccccEEEEEcccccccccEEEEEEEEEEEEcccccEEEEEcccccEEEEEEEEEEEEEEcccccEEEEcccccccccccccccEEEEEEEEEEEEccccccccEEEEEcccccccccEEEEEEEEEEccccccccccHcccccccccccccccccccc
MRELLIIILILSMAiwgssfqpceafpsyassVSVIqfgavgdgetdDSQAFLKAWKSICgsksnaapllvpagktfllnpvsfqgpcksssinvqiqgnivaphssawdghdkkkWLLFSNVngltvngngkidgkgaswwsnkqnqrptalsfgscnnlvfrglthvdspgnhisvygcndvsisnlkiiapesspntdgidithssnvqirdctiatgddcvaigtdtsniavtgvicgpghgisigslganggtsivedvhvrdctfkgtkngariktwqggsgharrISFERIrlessdnpiiidqyycgpngdcknqtsavkvsdvsyigfqgtsstEEAVQLScsesvgctdikinnidithsdsgkdtrASCINAhgelygqlvpsvdcllp
MRELLIIILILSMAIWGSSFQPCEAFPSYASSVSVIQFGAVGDGETDDSQAFLKAWKSICGSKSNAAPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQGNIVAPHSSAWDGHDKKKWLLFSNVNGLTVNGNGKIDGKGASWWSNKQNQRPTALSFGSCNNLVFRGLTHVDSPGNHISVYGCNDVSISNLKIIAPESSPNTDGIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGSLGANGGTSIVEDVHVRDCtfkgtkngariktwqggsgharrISFErirlessdnpIIIDQYYCGPNGDCKNQTSAVKVSDVSYIGFQGTSSTEEAVQLSCSESVGCTDIKinnidithsdsgkDTRASCINAHgelygqlvpsvdcllp
MRElliiililSMAIWGSSFQPCEAFPSYASSVSVIQFGAVGDGETDDSQAFLKAWKSICGSKSNAAPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQGNIVAPHSSAWDGHDKKKWLLFSNVNGLTVNGNGKIDGKGASWWSNKQNQRPTALSFGSCNNLVFRGLTHVDSPGNHISVYGCNDVSISNLKIIAPESSPNTDGIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGSLGANGGTSIVEDVHVRDCTFKGTKNGARIKTWQGGSGHARRISFERIRLESSDNPIIIDQYYCGPNGDCKNQTSAVKVSDVSYIGFQGTSSTEEAVQLSCSESVGCTDIKINNIDITHSDSGKDTRASCINAHGELYGQLVPSVDCLLP
***LLIIILILSMAIWGSSFQPCEAFPSYASSVSVIQFGAVGDGETDDSQAFLKAWKSICGSKSNAAPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQGNIVAPHSSAWDGHDKKKWLLFSNVNGLTVNGNGKIDGKGASWWSNKQNQRPTALSFGSCNNLVFRGLTHVDSPGNHISVYGCNDVSISNLKIIAP*******GIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGSLGANGGTSIVEDVHVRDCTFKGTKNGARIKTWQGGSGHARRISFERIRLESSDNPIIIDQYYCGPNGDCKNQTSAVKVSDVSYIGFQGTSSTEEAVQLSCSESVGCTDIKINNIDITHS*****TRASCINAHGELYGQLVPSVDCL**
*RELLIIILILSMAIWGSSFQP****PSYASSVSVIQFGAVGDGETDDSQAFLKAWKSICGSKSNAAPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQGNIVAPHSSAWDGHDKKKWLLFSNVNGLTVNGNGKIDGKGASWWSNKQNQRPTALSFGSCNNLVFRGLTHVDSPGNHISVYGCNDVSISNLKIIAPESSPNTDGIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISI**L*****TSIVEDVHVRDCTFKGTKNGARIKTWQGGSGHARRISFERIRLESSDNPIIIDQYYCGPNGDCKNQTSAVKVSDVSYIGFQGTSSTEEAVQLSCSESVGCTDIKINNIDITHSDSGKDTRASCINAHGELYGQLVPSVDCLLP
MRELLIIILILSMAIWGSSFQPCEAFPSYASSVSVIQFGAVGDGETDDSQAFLKAWKSICGSKSNAAPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQGNIVAPHSSAWDGHDKKKWLLFSNVNGLTVNGNGKIDGKGASWWSNKQNQRPTALSFGSCNNLVFRGLTHVDSPGNHISVYGCNDVSISNLKIIAPESSPNTDGIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGSLGANGGTSIVEDVHVRDCTFKGTKNGARIKTWQGGSGHARRISFERIRLESSDNPIIIDQYYCGPNGDCKNQTSAVKVSDVSYIGFQGTSSTEEAVQLSCSESVGCTDIKINNIDITHSDSGKDTRASCINAHGELYGQLVPSVDCLLP
MRELLIIILILSMAIWGSSFQPCE****YASSVS*IQFGAVGDGETDDSQAFLKAWKSICGSKSNAAPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQGNIVAPHSSAWDGHDKKKWLLFSNVNGLTVNGNGKIDGKGASWWSNKQNQRPTALSFGSCNNLVFRGLTHVDSPGNHISVYGCNDVSISNLKIIAPESSPNTDGIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGSLGANGGTSIVEDVHVRDCTFKGTKNGARIKTWQGGSGHARRISFERIRLESSDNPIIIDQYYCGPNGDCKNQTSAVKVSDVSYIGFQGTSSTEEAVQLSCSESVGCTDIKINNIDITHSDSGKDTRASCINAHGELYGQLVPSVDCLLP
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRELLIIILILSMAIWGSSFQPCEAFPSYASSVSVIQFGAVGDGETDDSQAFLKAWKSICGSKSNAAPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQGNIVAPHSSAWDGHDKKKWLLFSNVNGLTVNGNGKIDGKGASWWSNKQNQRPTALSFGSCNNLVFRGLTHVDSPGNHISVYGCNDVSISNLKIIAPESSPNTDGIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGSLGANGGTSIVEDVHVRDCTFKGTKNGARIKTWQGGSGHARRISFERIRLESSDNPIIIDQYYCGPNGDCKNQTSAVKVSDVSYIGFQGTSSTEEAVQLSCSESVGCTDIKINNIDITHSDSGKDTRASCINAHGELYGQLVPSVDCLLP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query400 2.2.26 [Sep-21-2011]
Q9LW07456 Probable polygalacturonas yes no 0.912 0.800 0.541 1e-109
Q94AJ5444 Probable polygalacturonas no no 0.912 0.822 0.430 3e-85
Q7M1E7514 Polygalacturonase OS=Cham N/A no 0.907 0.706 0.436 3e-82
P43212514 Polygalacturonase OS=Cryp N/A no 0.9 0.700 0.434 4e-81
Q02096462 Polygalacturonase OS=Pers N/A no 0.865 0.748 0.448 2e-79
Q9FY19507 Polygalacturonase OS=Juni N/A no 0.897 0.708 0.427 7e-78
O23147431 Polygalacturonase ADPG1 O no no 0.885 0.821 0.441 1e-77
Q9SFB7439 Polygalacturonase QRT2 OS no no 0.907 0.826 0.409 8e-74
P48978460 Polygalacturonase OS=Malu N/A no 0.882 0.767 0.427 3e-73
P35336467 Polygalacturonase OS=Acti N/A no 0.897 0.768 0.419 4e-73
>sp|Q9LW07|PGLR3_ARATH Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana GN=At3g15720 PE=1 SV=1 Back     alignment and function desciption
 Score =  394 bits (1013), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 202/373 (54%), Positives = 268/373 (71%), Gaps = 8/373 (2%)

Query: 30  ASSVSVIQFGAVGDGETDDSQAFLKAWKSICGSKSNAAPLLVPAGKTFLLNPVSFQGPCK 89
           ++++ V QFGAVGDG TDDSQAFLKAW+++C S +     +VPAG TF+L P+ FQG CK
Sbjct: 21  SNALDVTQFGAVGDGVTDDSQAFLKAWEAVC-SGTGDGQFVVPAGMTFMLQPLKFQGSCK 79

Query: 90  SSSINVQIQGNIVAPHSSAWDGHDKKKWLLFSNVNGLTVNGNGKIDGKGASWWSNKQNQR 149
           S+ + VQ+ G +VAP    W G DK +W+LF+++ GL + G+G+I+G+G+SWW +K   R
Sbjct: 80  STPVFVQMLGKLVAPSKGNWKG-DKDQWILFTDIEGLVIEGDGEINGQGSSWWEHK-GSR 137

Query: 150 PTALSFGSCNNLVFRGLTHVDSPGNHISVYGCNDVSISNLKIIAPESSPNTDGIDITHSS 209
           PTAL F SCNNL   GLTH+DSP  HI +  CN V+IS+L+I APESSPNTDGID+  SS
Sbjct: 138 PTALKFRSCNNLRLSGLTHLDSPMAHIHISECNYVTISSLRINAPESSPNTDGIDVGASS 197

Query: 210 NVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGSLGANGGTSIVEDVHVRDC 269
           NV I+DC IATGDDC+AI + TSNI ++G+ CGPGHGISIGSLG +G T+ VE+V V++C
Sbjct: 198 NVVIQDCIIATGDDCIAINSGTSNIHISGIDCGPGHGISIGSLGKDGETATVENVCVQNC 257

Query: 270 TFKGTKNGARIKTWQGGSGHARRISFERIRLESSDNPIIIDQYYCGPNGD--CKNQTSAV 327
            F+GT NGARIKTWQGGSG+AR I+F  I L++ +NPIIIDQ+Y G + D     ++SAV
Sbjct: 258 NFRGTMNGARIKTWQGGSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKSSAV 317

Query: 328 KVSDVSYIGFQGTSSTEEAVQLSCSESVGCTDIKINNIDI--THSDSGKDTRASCINAHG 385
           +VS V +  F GTS +E  V   CSE V CT+I + ++ I    S SG+  +  C+N  G
Sbjct: 318 EVSKVVFSNFIGTSKSEYGVDFRCSERVPCTEIFLRDMKIETASSGSGQVAQGQCLNVRG 377

Query: 386 ELYGQLVPSVDCL 398
                 VP ++CL
Sbjct: 378 A-STIAVPGLECL 389

Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 5
>sp|Q94AJ5|PGLR5_ARATH Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana GN=At1g80170 PE=1 SV=1 Back     alignment and function description
>sp|Q7M1E7|PGLR2_CHAOB Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=1 Back     alignment and function description
>sp|P43212|PGLR2_CRYJA Polygalacturonase OS=Cryptomeria japonica PE=1 SV=1 Back     alignment and function description
>sp|Q02096|PGLR_PERAE Polygalacturonase OS=Persea americana PE=2 SV=1 Back     alignment and function description
>sp|Q9FY19|PGLR2_JUNAS Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 SV=1 Back     alignment and function description
>sp|O23147|ADPG1_ARATH Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN=ADPG1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SFB7|QRT2_ARATH Polygalacturonase QRT2 OS=Arabidopsis thaliana GN=QRT2 PE=1 SV=2 Back     alignment and function description
>sp|P48978|PGLR_MALDO Polygalacturonase OS=Malus domestica PE=2 SV=1 Back     alignment and function description
>sp|P35336|PGLR_ACTDE Polygalacturonase OS=Actinidia deliciosa PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query400
449484419415 PREDICTED: probable polygalacturonase At 0.917 0.884 0.582 1e-119
449469286415 PREDICTED: probable polygalacturonase At 0.917 0.884 0.584 1e-119
359482694366 PREDICTED: probable polygalacturonase At 0.9 0.983 0.574 1e-116
297743440404 unnamed protein product [Vitis vinifera] 0.985 0.975 0.529 1e-116
255548940395 Polygalacturonase-2 precursor, putative 0.972 0.984 0.526 1e-109
356555461401 PREDICTED: probable polygalacturonase At 0.975 0.972 0.493 1e-109
356547430422 PREDICTED: probable polygalacturonase At 0.967 0.917 0.485 1e-108
225443001391 PREDICTED: probable polygalacturonase At 0.917 0.938 0.530 1e-108
297834448454 glycoside hydrolase family 28 protein [A 0.917 0.808 0.544 1e-107
18400876456 polygalacturonase [Arabidopsis thaliana] 0.912 0.800 0.541 1e-107
>gi|449484419|ref|XP_004156878.1| PREDICTED: probable polygalacturonase At3g15720-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 216/371 (58%), Positives = 275/371 (74%), Gaps = 4/371 (1%)

Query: 32  SVSVIQFGAVGDGETDDSQAFLKAWKSICGSKSNAAPLLVPAGKTFLLNPVSFQGPCKSS 91
           ++ V+Q+GA GDG+TDDS+AFLKAWK++C + + +A +LVP+ KTFLLNPV FQGPC SS
Sbjct: 47  AIDVVQYGAAGDGKTDDSRAFLKAWKAVCEANTPSA-MLVPSTKTFLLNPVQFQGPCMSS 105

Query: 92  SINVQIQGNIVAPHS-SAWDGHDKKKWLLFSNVNGLTVNGNGKIDGKGASWWSNKQNQRP 150
           S+ VQI G IVAP    AW   D K WLLFSNV+ L + GNG+IDG+GA+WW    + +P
Sbjct: 106 SVGVQILGKIVAPSDLDAWKDFDAKNWLLFSNVSRLVIQGNGEIDGQGAAWWDRDSDGKP 165

Query: 151 TALSFGSCNNLVFRGLTHVDSPGNHISVYGCNDVSISNLKIIAPESSPNTDGIDITHSSN 210
           TAL+   C+ L   GLTH +SP +H+ +  CN  SIS L I+APE+SPNTDGID+ HSS+
Sbjct: 166 TALAIYDCDGLHLSGLTHSNSPKSHMHIVRCNHASISKLNIVAPENSPNTDGIDVAHSSH 225

Query: 211 VQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGSLGANGGTSIVEDVHVRDCT 270
           V+I +C I TGDDC+AI   TSNI +  + CGPGHGISIGSLG +G +S VEDV V++C 
Sbjct: 226 VKIHNCNIGTGDDCIAISEGTSNIHIANIQCGPGHGISIGSLGKDGTSSSVEDVRVQNCH 285

Query: 271 FKGTKNGARIKTWQGGSGHARRISFERIRLESSDNPIIIDQYYCGPNGDCKN-QTSAVKV 329
            KGT  GARIKTWQGG+G+AR+ISF+ I L+    PI+IDQYYC    DCKN QTSAV+V
Sbjct: 286 LKGTMYGARIKTWQGGAGYARKISFQGITLDQVHKPILIDQYYCNGKTDCKNQQTSAVEV 345

Query: 330 SDVSYIGFQGTSSTEEAVQLSCSESVGCTDIKINNIDITHSDSGKDTRASCINAHGELYG 389
           SDV Y G  GTS+TE AV+LSCSE+VGC +I + +IDI ++DS K  ++SC +AHG    
Sbjct: 346 SDVLYQGLHGTSATEVAVELSCSETVGCRNIVLEDIDIRYADSDKIAQSSCDDAHGTSTN 405

Query: 390 QLVPSVDCLLP 400
              P+VDCL P
Sbjct: 406 TF-PAVDCLKP 415

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449469286|ref|XP_004152352.1| PREDICTED: probable polygalacturonase At3g15720-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359482694|ref|XP_002266543.2| PREDICTED: probable polygalacturonase At3g15720-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297743440|emb|CBI36307.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255548940|ref|XP_002515526.1| Polygalacturonase-2 precursor, putative [Ricinus communis] gi|223545470|gb|EEF46975.1| Polygalacturonase-2 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356555461|ref|XP_003546050.1| PREDICTED: probable polygalacturonase At3g15720-like [Glycine max] Back     alignment and taxonomy information
>gi|356547430|ref|XP_003542115.1| PREDICTED: probable polygalacturonase At3g15720-like [Glycine max] Back     alignment and taxonomy information
>gi|225443001|ref|XP_002266960.1| PREDICTED: probable polygalacturonase At3g15720 [Vitis vinifera] gi|297743436|emb|CBI36303.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297834448|ref|XP_002885106.1| glycoside hydrolase family 28 protein [Arabidopsis lyrata subsp. lyrata] gi|297330946|gb|EFH61365.1| glycoside hydrolase family 28 protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18400876|ref|NP_566524.1| polygalacturonase [Arabidopsis thaliana] gi|75311636|sp|Q9LW07.1|PGLR3_ARATH RecName: Full=Probable polygalacturonase At3g15720; Short=PG; AltName: Full=Pectinase At3g15720; Flags: Precursor gi|11994344|dbj|BAB02303.1| polygalacturonase-like protein [Arabidopsis thaliana] gi|332642197|gb|AEE75718.1| polygalacturonase [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query400
TAIR|locus:2093212456 AT3G15720 [Arabidopsis thalian 0.925 0.811 0.540 2.2e-105
TAIR|locus:2128023394 AT4G35670 [Arabidopsis thalian 0.887 0.901 0.529 2.7e-100
TAIR|locus:2146370458 AT5G27530 [Arabidopsis thalian 0.86 0.751 0.511 3.7e-96
TAIR|locus:2167185421 AT5G17200 [Arabidopsis thalian 0.727 0.691 0.510 7.8e-95
TAIR|locus:2155292381 AT5G44840 [Arabidopsis thalian 0.855 0.897 0.473 2e-86
TAIR|locus:2016314444 AT1G80170 [Arabidopsis thalian 0.895 0.806 0.440 9.1e-84
TAIR|locus:2026795468 AT1G70500 [Arabidopsis thalian 0.902 0.771 0.434 3.7e-80
TAIR|locus:504955462 486 AT4G32375 [Arabidopsis thalian 0.825 0.679 0.448 9.7e-80
TAIR|locus:2028844460 AT1G23460 [Arabidopsis thalian 0.902 0.784 0.429 2e-79
TAIR|locus:2222657435 AT5G14650 [Arabidopsis thalian 0.905 0.832 0.428 5.4e-79
TAIR|locus:2093212 AT3G15720 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1043 (372.2 bits), Expect = 2.2e-105, P = 2.2e-105
 Identities = 205/379 (54%), Positives = 273/379 (72%)

Query:    24 EAFPSYASSVSVIQFGAVGDGETDDSQAFLKAWKSICGSKSNAAPLLVPAGKTFLLNPVS 83
             + F S ++++ V QFGAVGDG TDDSQAFLKAW+++C S +     +VPAG TF+L P+ 
Sbjct:    16 QIFTS-SNALDVTQFGAVGDGVTDDSQAFLKAWEAVC-SGTGDGQFVVPAGMTFMLQPLK 73

Query:    84 FQGPCKSSSINVQIQGNIVAPHSSAWDGHDKKKWLLFSNVNGLTVNGNGKIDGKGASWWS 143
             FQG CKS+ + VQ+ G +VAP    W G DK +W+LF+++ GL + G+G+I+G+G+SWW 
Sbjct:    74 FQGSCKSTPVFVQMLGKLVAPSKGNWKG-DKDQWILFTDIEGLVIEGDGEINGQGSSWWE 132

Query:   144 NKQNQRPTALSFGSCNNLVFRGLTHVDSPGNHISVYGCNDVSISNLKIIAPESSPNTDGI 203
             +K   RPTAL F SCNNL   GLTH+DSP  HI +  CN V+IS+L+I APESSPNTDGI
Sbjct:   133 HK-GSRPTALKFRSCNNLRLSGLTHLDSPMAHIHISECNYVTISSLRINAPESSPNTDGI 191

Query:   204 DITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGSLGANGGTSIVED 263
             D+  SSNV I+DC IATGDDC+AI + TSNI ++G+ CGPGHGISIGSLG +G T+ VE+
Sbjct:   192 DVGASSNVVIQDCIIATGDDCIAINSGTSNIHISGIDCGPGHGISIGSLGKDGETATVEN 251

Query:   264 VHVRDCTFKGTKNGARIKTWQGGSGHARRISFERIRLESSDNPIIIDQYYCGPNGD-CKN 322
             V V++C F+GT NGARIKTWQGGSG+AR I+F  I L++ +NPIIIDQ+Y G + D  K+
Sbjct:   252 VCVQNCNFRGTMNGARIKTWQGGSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKD 311

Query:   323 Q-TSAVKVSDVSYIGFQGTSSTEEAVQLSCSESVGCTDIKINN--IDITHSDSGKDTRAS 379
             + +SAV+VS V +  F GTS +E  V   CSE V CT+I + +  I+   S SG+  +  
Sbjct:   312 RKSSAVEVSKVVFSNFIGTSKSEYGVDFRCSERVPCTEIFLRDMKIETASSGSGQVAQGQ 371

Query:   380 CINAHGELYGQLVPSVDCL 398
             C+N  G      VP ++CL
Sbjct:   372 CLNVRGAST-IAVPGLECL 389
GO:0004650 "polygalacturonase activity" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS
GO:0031225 "anchored to membrane" evidence=TAS
GO:0046658 "anchored to plasma membrane" evidence=IDA
GO:0009505 "plant-type cell wall" evidence=IDA
TAIR|locus:2128023 AT4G35670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2146370 AT5G27530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2167185 AT5G17200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2155292 AT5G44840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2016314 AT1G80170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026795 AT1G70500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504955462 AT4G32375 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028844 AT1G23460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2222657 AT5G14650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LW07PGLR3_ARATH3, ., 2, ., 1, ., 1, 50.54150.91250.8004yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.1.15LOW CONFIDENCE prediction!
3rd Layer3.2.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query400
PLN03003456 PLN03003, PLN03003, Probable polygalacturonase At3 1e-135
PLN03010409 PLN03010, PLN03010, polygalacturonase 1e-131
PLN02793443 PLN02793, PLN02793, Probable polygalacturonase 1e-119
PLN02188404 PLN02188, PLN02188, polygalacturonase/glycoside hy 4e-99
PLN02218431 PLN02218, PLN02218, polygalacturonase ADPG 9e-96
pfam00295325 pfam00295, Glyco_hydro_28, Glycosyl hydrolases fam 2e-92
PLN02155394 PLN02155, PLN02155, polygalacturonase 4e-86
COG5434542 COG5434, PGU1, Endopygalactorunase [Cell envelope 2e-29
pfam12708222 pfam12708, Pectate_lyase_3, Pectate lyase superfam 1e-07
>gnl|CDD|178580 PLN03003, PLN03003, Probable polygalacturonase At3g15720 Back     alignment and domain information 
 Score =  395 bits (1016), Expect = e-135
 Identities = 202/375 (53%), Positives = 269/375 (71%), Gaps = 8/375 (2%)

Query: 28  SYASSVSVIQFGAVGDGETDDSQAFLKAWKSICGSKSNAAPLLVPAGKTFLLNPVSFQGP 87
           + ++++ V QFGAVGDG TDDSQAFLKAW+++C S +     +VPAG TF+L P+ FQG 
Sbjct: 19  TSSNALDVTQFGAVGDGVTDDSQAFLKAWEAVC-SGTGDGQFVVPAGMTFMLQPLKFQGS 77

Query: 88  CKSSSINVQIQGNIVAPHSSAWDGHDKKKWLLFSNVNGLTVNGNGKIDGKGASWWSNKQN 147
           CKS+ + VQ+ G +VAP    W G DK +W+LF+++ GL + G+G+I+G+G+SWW +K  
Sbjct: 78  CKSTPVFVQMLGKLVAPSKGNWKG-DKDQWILFTDIEGLVIEGDGEINGQGSSWWEHK-G 135

Query: 148 QRPTALSFGSCNNLVFRGLTHVDSPGNHISVYGCNDVSISNLKIIAPESSPNTDGIDITH 207
            RPTAL F SCNNL   GLTH+DSP  HI +  CN V+IS+L+I APESSPNTDGID+  
Sbjct: 136 SRPTALKFRSCNNLRLSGLTHLDSPMAHIHISECNYVTISSLRINAPESSPNTDGIDVGA 195

Query: 208 SSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGSLGANGGTSIVEDVHVR 267
           SSNV I+DC IATGDDC+AI + TSNI ++G+ CGPGHGISIGSLG +G T+ VE+V V+
Sbjct: 196 SSNVVIQDCIIATGDDCIAINSGTSNIHISGIDCGPGHGISIGSLGKDGETATVENVCVQ 255

Query: 268 DCTFKGTKNGARIKTWQGGSGHARRISFERIRLESSDNPIIIDQYYCGPNGDC--KNQTS 325
           +C F+GT NGARIKTWQGGSG+AR I+F  I L++ +NPIIIDQ+Y G + D     ++S
Sbjct: 256 NCNFRGTMNGARIKTWQGGSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKSS 315

Query: 326 AVKVSDVSYIGFQGTSSTEEAVQLSCSESVGCTDIKINNIDI--THSDSGKDTRASCINA 383
           AV+VS V +  F GTS +E  V   CSE V CT+I + ++ I    S SG+  +  C+N 
Sbjct: 316 AVEVSKVVFSNFIGTSKSEYGVDFRCSERVPCTEIFLRDMKIETASSGSGQVAQGQCLNV 375

Query: 384 HGELYGQLVPSVDCL 398
            G      VP ++CL
Sbjct: 376 RG-ASTIAVPGLECL 389

Length = 456
>gnl|CDD|215540 PLN03010, PLN03010, polygalacturonase Back     alignment and domain information
>gnl|CDD|215426 PLN02793, PLN02793, Probable polygalacturonase Back     alignment and domain information
>gnl|CDD|215120 PLN02188, PLN02188, polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>gnl|CDD|177865 PLN02218, PLN02218, polygalacturonase ADPG Back     alignment and domain information
>gnl|CDD|215843 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family 28 Back     alignment and domain information
>gnl|CDD|165802 PLN02155, PLN02155, polygalacturonase Back     alignment and domain information
>gnl|CDD|227721 COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|221728 pfam12708, Pectate_lyase_3, Pectate lyase superfamily protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 400
PLN02793443 Probable polygalacturonase 100.0
PLN02155394 polygalacturonase 100.0
PLN03010409 polygalacturonase 100.0
PLN03003456 Probable polygalacturonase At3g15720 100.0
PLN02218431 polygalacturonase ADPG 100.0
PLN02188404 polygalacturonase/glycoside hydrolase family prote 100.0
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 100.0
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 100.0
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 99.95
PLN02793443 Probable polygalacturonase 99.87
PLN02188404 polygalacturonase/glycoside hydrolase family prote 99.87
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 99.86
PLN03003456 Probable polygalacturonase At3g15720 99.86
PLN03010409 polygalacturonase 99.86
PLN02218431 polygalacturonase ADPG 99.86
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 99.84
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 99.84
PLN02155394 polygalacturonase 99.83
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.67
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 99.33
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.29
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.8
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 98.69
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 98.68
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.68
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.58
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.48
PRK10123464 wcaM putative colanic acid biosynthesis protein; P 98.46
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.45
PLN02497331 probable pectinesterase 98.44
PLN02176340 putative pectinesterase 98.44
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.43
smart00656190 Amb_all Amb_all domain. 98.4
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.38
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.31
PLN02682369 pectinesterase family protein 98.27
PLN02480343 Probable pectinesterase 98.25
PLN02773317 pectinesterase 98.2
PLN02634359 probable pectinesterase 98.19
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.1
smart00656190 Amb_all Amb_all domain. 98.07
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 98.03
PLN02665366 pectinesterase family protein 98.03
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 97.88
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 97.86
PLN02304379 probable pectinesterase 97.83
PLN02671359 pectinesterase 97.81
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 97.8
PRK10531422 acyl-CoA thioesterase; Provisional 97.8
PLN02170529 probable pectinesterase/pectinesterase inhibitor 97.78
PLN02468565 putative pectinesterase/pectinesterase inhibitor 97.76
PLN02197588 pectinesterase 97.76
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 97.73
PLN02484587 probable pectinesterase/pectinesterase inhibitor 97.73
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 97.72
PLN02201520 probable pectinesterase/pectinesterase inhibitor 97.71
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 97.69
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 97.69
PLN02432293 putative pectinesterase 97.67
PLN02416541 probable pectinesterase/pectinesterase inhibitor 97.65
PLN02314586 pectinesterase 97.64
PLN02916502 pectinesterase family protein 97.64
PLN02506537 putative pectinesterase/pectinesterase inhibitor 97.63
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 97.62
PLN02217670 probable pectinesterase/pectinesterase inhibitor 97.62
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 97.59
PLN02301548 pectinesterase/pectinesterase inhibitor 97.59
PLN02488509 probable pectinesterase/pectinesterase inhibitor 97.58
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 97.49
PLN02313587 Pectinesterase/pectinesterase inhibitor 97.49
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 97.34
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 97.33
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 97.22
PF1221867 End_N_terminal: N terminal extension of bacterioph 96.99
PLN02682369 pectinesterase family protein 96.52
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 95.97
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 94.24
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 93.92
PF09251549 PhageP22-tail: Salmonella phage P22 tail-spike; In 93.79
PLN02480343 Probable pectinesterase 92.56
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 91.09
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 91.07
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 89.9
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 89.59
PLN02468565 putative pectinesterase/pectinesterase inhibitor 88.52
PLN02176340 putative pectinesterase 88.41
PLN02665366 pectinesterase family protein 88.33
PLN02170529 probable pectinesterase/pectinesterase inhibitor 87.66
PLN02634359 probable pectinesterase 87.65
PLN02916502 pectinesterase family protein 87.52
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 86.84
PRK10531422 acyl-CoA thioesterase; Provisional 86.74
PLN02671359 pectinesterase 86.66
PLN02432293 putative pectinesterase 86.58
PRK10123464 wcaM putative colanic acid biosynthesis protein; P 86.34
PLN02506537 putative pectinesterase/pectinesterase inhibitor 86.31
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 85.85
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 85.81
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 85.72
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 85.6
PLN02488509 probable pectinesterase/pectinesterase inhibitor 85.25
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 85.17
PLN02201520 probable pectinesterase/pectinesterase inhibitor 85.0
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 84.85
PLN02301548 pectinesterase/pectinesterase inhibitor 84.71
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 84.68
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 84.28
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 82.69
PLN02313587 Pectinesterase/pectinesterase inhibitor 82.3
PLN02484587 probable pectinesterase/pectinesterase inhibitor 82.2
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 82.17
PLN02314586 pectinesterase 81.81
PLN02304379 probable pectinesterase 81.72
PF08480198 Disaggr_assoc: Disaggregatase related; InterPro: I 80.91
>PLN02793 Probable polygalacturonase Back     alignment and domain information 
Probab=100.00  E-value=6.1e-81  Score=618.48  Aligned_cols=369  Identities=46%  Similarity=0.854  Sum_probs=343.1

Q ss_pred             CCCCeeEEeeecCccCCCCcchHHHHHHHHHHHhcCCCCCceEEecCCCEEEeeeeeecCCCCCCCeEEEEeEEEEccCC
Q 041224           27 PSYASSVSVIQFGAVGDGETDDSQAFLKAWKSICGSKSNAAPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQGNIVAPHS  106 (400)
Q Consensus        27 ~~~~~~~nv~d~Ga~gdg~tddt~aiq~Ai~~a~~~~~gg~~v~iP~G~~Y~~~~l~l~~~~ks~~v~l~~~g~i~~~~~  106 (400)
                      |..++++||+||||+|||.+|||+|||+||+++|++. +|++|+||+|++|++++|.|.++||| +++|+++|+|+++.+
T Consensus        47 ~~~~~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC~~~-ggg~v~vP~G~~fl~~~i~l~gpcks-~vtL~l~g~l~~~~d  124 (443)
T PLN02793         47 PRSERVLHVGDFGAKGDGVTDDTQAFKEAWKMACSSK-VKTRIVIPAGYTFLVRPIDLGGPCKA-KLTLQISGTIIAPKD  124 (443)
T ss_pred             CCCceEEEhhhcccCCCCCCccHHHHHHHHHHHhccC-CCCEEEECCCceEEEEEEEECCccCC-CeEEEEEEEEEccCC
Confidence            4445789999999999999999999999997689876 78999999996699999999999999 999999999999999


Q ss_pred             -CCccCCCccccEEEeeeeceEEecCeeEeCCCccccccCC--------CCCCceEEEeeeCcEEEEceEEeCCCCceEE
Q 041224          107 -SAWDGHDKKKWLLFSNVNGLTVNGNGKIDGKGASWWSNKQ--------NQRPTALSFGSCNNLVFRGLTHVDSPGNHIS  177 (400)
Q Consensus       107 -~~~~~~~~~~~i~~~~~~nv~I~G~G~idg~g~~~~~~~~--------~~rp~~i~~~~~~nv~i~~v~i~ns~~~~i~  177 (400)
                       .+|++...++||.+.+++|++|+|.|+|||+|+.||...+        ..||+++.|.+|+|++|++++++|||+|+++
T Consensus       125 ~~~w~~~~~~~~i~~~~~~ni~ItG~G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nSp~~~i~  204 (443)
T PLN02793        125 PDVWKGLNPRKWLYFHGVNHLTVEGGGTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQQMHIA  204 (443)
T ss_pred             hHHccCCCCceEEEEecCceEEEEeceEEECCCcccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcCCCeEEE
Confidence             9998766678999999999999999999999999996422        2489999999999999999999999999999


Q ss_pred             EEeecceEEeceEEECCCCCCCCCeeeecCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCCceEEEeccCCCCC
Q 041224          178 VYGCNDVSISNLKIIAPESSPNTDGIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGSLGANGG  257 (400)
Q Consensus       178 ~~~~~nv~i~~~~I~~~~~~~n~DGi~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~~~  257 (400)
                      +.+|++++|++++|.++..++|+||||+.+|+||+|+||+|+++||||++|++++||+|+||.|..+||++|||+|+.+.
T Consensus       205 ~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~s~nI~I~n~~c~~GhGisIGSlg~~~~  284 (443)
T PLN02793        205 FTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGNSSRIKIRNIACGPGHGISIGSLGKSNS  284 (443)
T ss_pred             EEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCCcCCEEEEEeEEeCCccEEEecccCcCC
Confidence            99999999999999999888999999999999999999999999999999999999999999999999999999998766


Q ss_pred             CCCEEEEEEEeeEEeCCcceEEEEeecCCCeeEEeEEEEeEEEecCCccEEEEeeecCCCCCCCCCCcceeEEeEEEEeE
Q 041224          258 TSIVEDVHVRDCTFKGTKNGARIKTWQGGSGHARRISFERIRLESSDNPIIIDQYYCGPNGDCKNQTSAVKVSDVSYIGF  337 (400)
Q Consensus       258 ~~~i~ni~v~N~~~~~~~~gi~i~~~~~~~g~i~nI~f~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nItf~nI  337 (400)
                      .+.++||+|+||++.++.+|+|||+|++++|.|+||+|+||+|+++.+||.|+++|+....+|.+..+.+.|+||+|+||
T Consensus       285 ~~~V~nV~v~n~~~~~t~~GirIKt~~g~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts~v~I~nI~~~nI  364 (443)
T PLN02793        285 WSEVRDITVDGAFLSNTDNGVRIKTWQGGSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKVENISFVHI  364 (443)
T ss_pred             CCcEEEEEEEccEEeCCCceEEEEEeCCCCEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCCCeEEEeEEEEEE
Confidence            78999999999999999999999999999999999999999999999999999999876667877778899999999999


Q ss_pred             EEecCCcceEEEEecCCCCeecEEEEeEEEEecCCCCCcceeeecceecccceeecCCCCCC
Q 041224          338 QGTSSTEEAVQLSCSESVGCTDIKINNIDITHSDSGKDTRASCINAHGELYGQLVPSVDCLL  399 (400)
Q Consensus       338 ~~~~~~~~~i~i~~~~~~~~~ni~~~nv~i~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~  399 (400)
                      +++.....++.+.|+++.||+||+|+||+++..+ +......|.|++|...| .++||+|+.
T Consensus       365 ~Gt~~~~~ai~l~cs~~~pc~ni~l~nI~l~~~~-g~~~~~~C~n~~g~~~~-~~~p~~C~~  424 (443)
T PLN02793        365 KGTSATEEAIKFACSDSSPCEGLYLEDVQLLSST-GDFTESFCWEAYGSSSG-QVYPPPCFS  424 (443)
T ss_pred             EEEEcccccEEEEeCCCCCEeeEEEEeeEEEecC-CCCCCcEEEccEEeECC-eEcCCcccc
Confidence            9998766689999999999999999999999887 44667899999999999 888889973

>PLN02155 polygalacturonase Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP) Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query400
1nhc_A336 Structural Insights Into The Processivity Of Endopo 7e-20
1bhe_A376 Polygalacturonase From Erwinia Carotovora Ssp. Caro 5e-19
1rmg_A422 Rhamnogalacturonase A From Aspergillus Aculeatus Le 2e-17
1ia5_A339 Polygalacturonase From Aspergillus Aculeatus Length 3e-16
2iq7_A339 Crystal Structure Of The Polygalacturonase From Col 6e-15
1hg8_A349 Endopolygalacturonase From The Phytopathogenic Fung 3e-14
3jur_A448 The Crystal Structure Of A Hyperthermoactive Exopol 4e-13
1czf_A362 Endo-Polygalacturonase Ii From Aspergillus Niger Le 6e-13
1k5c_A335 Endopolygalacturonase I From Stereum Purpureum At 0 3e-09
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger Length = 336 Back     alignment and structure 
Iteration: 1

 Score = 94.7 bits (234), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 81/262 (30%), Positives = 127/262 (48%), Gaps = 23/262 (8%)
Query: 134 IDGKGASWWSNKQNQ----RPTALSFGSCNNLVFRGLTHVDSPGNHISVYGCNDVSISNL 189
           IDG G+ WW +K       +P  +      +  F+G+   ++P   ISV   N V +++ 
Sbjct: 80  IDGDGSRWWDSKGTNGGKTKPKFMYIHDVEDSTFKGINIKNTPVQAISVQATN-VHLNDF 138
Query: 190 KIIAPESSPN----TDGIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGH 245
            I   +   N    TDG DI+ S+ V I   T+   DDC+AI +  S I+ TG  C  GH
Sbjct: 139 TIDNSDGDDNGGHNTDGFDISESTGVYISGATVKNQDDCIAINSGES-ISFTGGTCSGGH 197
Query: 246 GISIGSLGANGGTSIVEDVHVRDCTFKGTKNGARIKTWQGGSGHARRISFERIRLES-SD 304
           G+SIGS+G     + V++V + D T   + NG RIKT    +G    I++  I+L   +D
Sbjct: 198 GLSIGSVGGRDDNT-VKNVTISDSTVSNSANGVRIKTIYKETGDVSEITYSNIQLSGITD 256
Query: 305 NPIIIDQYY--CGPNGDCKNQTSAVKVSDVSYIGFQGTSSTEEA-VQLSCSESVGCTDIK 361
             I+I+Q Y    P G     ++ + ++DV+  G  GT   +   V + C +   C+D  
Sbjct: 257 YGIVIEQDYENGSPTG---TPSTGIPITDVTVDGVTGTLEDDATQVYILCGDG-SCSDWT 312
Query: 362 INNIDITHSDSGKDTRASCINA 383
            + +D+    SG  T   C N 
Sbjct: 313 WSGVDL----SGGKTSDKCENV 330
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora Length = 376 Back     alignment and structure
>pdb|1RMG|A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus Length = 422 Back     alignment and structure
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus Length = 339 Back     alignment and structure
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins Length = 339 Back     alignment and structure
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme Length = 349 Back     alignment and structure
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima Length = 448 Back     alignment and structure
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger Length = 362 Back     alignment and structure
>pdb|1K5C|A Chain A, Endopolygalacturonase I From Stereum Purpureum At 0.96 A Resolution Length = 335 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query400
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 1e-126
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 1e-114
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 1e-109
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 1e-106
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 1e-102
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 1e-101
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 3e-97
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 1e-96
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 8e-96
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 2e-85
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 2e-34
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 1e-31
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 1e-29
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 7e-29
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 3e-19
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 2e-16
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 2e-13
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 4e-10
2vbk_A514 Tailspike-protein; viral adhesion protein, viral p 5e-04
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422 Back     alignment and structure
 Score =  368 bits (947), Expect = e-126
 Identities = 82/375 (21%), Positives = 154/375 (41%), Gaps = 24/375 (6%)

Query: 27  PSYASSVSVIQFGAVGDGETDDSQAFLKAWKSICGSKSNAAPLLVPAGKTFLLNPVSFQG 86
                + +++ +GAV D  TD   A   AW + C S      + +P+G   L   V+  G
Sbjct: 15  KGATKTCNILSYGAVADNSTDVGPAITSAWAA-CKSGGL---VYIPSGNYALNTWVTLTG 70

Query: 87  PCKSSSINVQIQGNIVAPHSSAWDGHDKKKWLLFSNVNGLTVNGNGKIDGKGASWWSNKQ 146
                   +Q+ G I    +++ +          ++    +    G + G G  + +   
Sbjct: 71  GSA---TAIQLDGIIYRTGTASGN---MIAVTDTTDFELFSSTSKGAVQGFGYVYHAEG- 123

Query: 147 NQRPTALSFGSCNNLVFRGLTHVDSPGNHISVYGCNDVSISNLKIIAPESSPNTDGIDIT 206
                 L      +     +  VD+P  H ++  C+D  + N+ I    +    DGID+ 
Sbjct: 124 TYGARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRGG-NEGGLDGIDV- 181

Query: 207 HSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGSLGANGGTSIVEDVHV 266
             SN+ + D  +   D+CV + +  +NI V  + C    G ++GSLGA+     V D+  
Sbjct: 182 WGSNIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGADTD---VTDIVY 238

Query: 267 RDCTFKGTKNGARIKTWQGGSGHARRISFERIRLESSDNPIIIDQYYCGPNGDCKNQTSA 326
           R+     +     IK+  GGSG    +  E      +   + ID Y+             
Sbjct: 239 RNVYTWSSNQMYMIKSN-GGSGTVSNVLLENFIGHGNAYSLDIDGYWSSM---TAVAGDG 294

Query: 327 VKVSDVSYIGFQGTSS---TEEAVQLSCSESVGCTDIKINNIDITHSDSGKDTRASCINA 383
           V++++++   ++GT +   T   +++ CS++  CTD+ + +I I  ++SG      C +A
Sbjct: 295 VQLNNITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAIW-TESGSSELYLCRSA 353

Query: 384 HGELYGQLVPSVDCL 398
           +G  Y     S    
Sbjct: 354 YGSGYCLKDSSSHTS 368
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Length = 362 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Length = 376 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Length = 339 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Length = 339 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Length = 336 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Length = 349 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Length = 448 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Length = 335 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Length = 608 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Length = 464 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Length = 549 Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Length = 600 Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Length = 574 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Length = 377 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Length = 758 Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Length = 514 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query400
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 100.0
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 100.0
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 100.0
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 100.0
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 100.0
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 100.0
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 100.0
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 100.0
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 100.0
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 100.0
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 100.0
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 100.0
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 100.0
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 100.0
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 100.0
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 100.0
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 99.97
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.97
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 99.94
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.9
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 99.89
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 99.89
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 99.89
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 99.88
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 99.87
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 99.87
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 99.85
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 99.85
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 99.85
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 99.8
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 99.79
2inu_A410 Insulin fructotransferase; right-handed parallel b 99.58
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 99.53
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 99.53
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 99.52
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 99.47
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.41
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.25
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.18
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 99.12
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 98.7
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.67
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 98.66
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 98.64
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 98.57
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.56
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.56
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 98.55
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 98.4
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 98.4
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.36
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 98.36
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 98.32
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 98.21
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 98.21
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 98.15
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 98.1
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 98.09
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 98.09
2x3h_A 542 K5 lyase, K5A lyase; bacteriophage, glycosaminogly 98.07
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 98.04
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 97.96
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 97.95
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 97.92
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 97.91
2inu_A410 Insulin fructotransferase; right-handed parallel b 97.86
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 97.78
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 97.6
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 97.51
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 97.34
2vbk_A514 Tailspike-protein; viral adhesion protein, viral p 96.76
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 95.67
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 95.62
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 95.56
1dbg_A506 Chondroitinase B; beta helix, polysaccharide lyase 95.43
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 95.41
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 94.26
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 93.96
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 93.61
3b4n_A344 Endo-pectate lyase; pectin, galacturonic acid, rig 92.71
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 91.76
2v5i_A559 Salmonella typhimurium DB7155 bacteriophage DET7 t 91.66
2xc1_A666 Bifunctional tail protein; hydrolase, endoglycosid 91.46
3ju4_A 670 Endo-N-acetylneuraminidase; endonf, polysia, high- 88.63
2vfm_A559 Bifunctional tail protein; P22 tailspike protein, 87.5
3riq_A543 Tailspike protein; right handed beta-helix, endorh 85.51
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
Probab=100.00  E-value=2.4e-66  Score=518.11  Aligned_cols=325  Identities=26%  Similarity=0.406  Sum_probs=293.7

Q ss_pred             CCCCeeEEeeecCccCCCCcchHHHHHHHHHHHhcCCCCCceEEecCCCEEEeeeeeecCCCCCCCeEEEEeEEEEccCC
Q 041224           27 PSYASSVSVIQFGAVGDGETDDSQAFLKAWKSICGSKSNAAPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQGNIVAPHS  106 (400)
Q Consensus        27 ~~~~~~~nv~d~Ga~gdg~tddt~aiq~Ai~~a~~~~~gg~~v~iP~G~~Y~~~~l~l~~~~ks~~v~l~~~g~i~~~~~  106 (400)
                      ..+++.+||+||||+|||.+|||+|||+||+ +|++. ++++|+||+| +|++++|.|    +| +++|+++|+|+++.+
T Consensus        22 ~~~~~~~~v~~~GA~gdg~tddt~Aiq~Ai~-~c~~~-ggg~v~vP~G-~yl~~~l~l----~s-~v~l~l~gtL~~s~d   93 (448)
T 3jur_A           22 QIPDREVNLLDFGARGDGRTDCSESFKRAIE-ELSKQ-GGGRLIVPEG-VFLTGPIHL----KS-NIELHVKGTIKFIPD   93 (448)
T ss_dssp             CCCSCEEEGGGGTCCCEEEEECHHHHHHHHH-HHHHH-TCEEEEECSS-EEEESCEEC----CT-TEEEEESSEEEECCC
T ss_pred             CCCCcEEEEEecccCCCCCeecHHHHHHHHH-hhhhc-CCeEEEECCC-cEEEeeeEe----CC-CcEEEEEEEEEecCC
Confidence            4577899999999999999999999999995 56654 6889999999 999999999    68 999999999999999


Q ss_pred             -CCc-cCC----------CccccEEEeeeeceEEecCeeEeCCC--ccccccC---------------------------
Q 041224          107 -SAW-DGH----------DKKKWLLFSNVNGLTVNGNGKIDGKG--ASWWSNK---------------------------  145 (400)
Q Consensus       107 -~~~-~~~----------~~~~~i~~~~~~nv~I~G~G~idg~g--~~~~~~~---------------------------  145 (400)
                       .+| +..          ...+||.+.+++||+|+|.|+|||+|  +.||+..                           
T Consensus        94 ~~~y~p~~~~~~~G~~~~~~~~lI~~~~~~ni~ItG~GtIDG~G~~~~ww~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  173 (448)
T 3jur_A           94 PERYLPVVLTRFEGIELYNYSPLVYALDCENVAITGSGVLDGSADNEHWWPWKGKKDFGWKEGLPNQQEDVKKLKEMAER  173 (448)
T ss_dssp             GGGGCSCEEEEETTEEEEESCCSEEEESCEEEEEESSCEEECCCBTTBBGGGGCCGGGTCCTTSCCSHHHHHHHHHHHHH
T ss_pred             HHHhCcccccccccccccCccceEEEeCcEeeEEEEeEEEECCCCchhhhhhcccccccccccccccccchhhhhhhhcc
Confidence             888 321          23579999999999999999999999  8899631                           


Q ss_pred             ------------CCCCCceEEEeeeCcEEEEceEEeCCCCceEEEEeecceEEeceEEECCCCCCCCCeeeecCcccEEE
Q 041224          146 ------------QNQRPTALSFGSCNNLVFRGLTHVDSPGNHISVYGCNDVSISNLKIIAPESSPNTDGIDITHSSNVQI  213 (400)
Q Consensus       146 ------------~~~rp~~i~~~~~~nv~i~~v~i~ns~~~~i~~~~~~nv~i~~~~I~~~~~~~n~DGi~i~~s~nV~I  213 (400)
                                  ...||++|.|.+|+|++|++++++|||+|++++..|+|++|++++|.++  ++|+||||+.+|+||+|
T Consensus       174 ~~p~~~~~~~~~~~~RP~~i~~~~~~nv~i~giti~nsp~~~i~~~~~~nv~i~~v~I~~~--~~NtDGidi~~s~nV~I  251 (448)
T 3jur_A          174 GTPVEERVFGKGHYLRPSFVQFYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISST--GPNNDGIDPESCKYMLI  251 (448)
T ss_dssp             TCCGGGCBCSTTCCCCCCSEEEESCEEEEEESCEEESCSSCSEEEESCEEEEEESCEEEEC--STTCCSBCCBSCEEEEE
T ss_pred             cCcchhhhccccccCCceEEEEEcccceEEEeeEEEeCCCceEeeeccCCEEEEeEEEeec--cCCCccccccCCcCEEE
Confidence                        1268999999999999999999999999999999999999999999997  58999999999999999


Q ss_pred             EeeEEecCCceEEEcCC-----------ceeEEEEeeEE--cCCc-eEEEeccCCCCCCCCEEEEEEEeeEEeCCcceEE
Q 041224          214 RDCTIATGDDCVAIGTD-----------TSNIAVTGVIC--GPGH-GISIGSLGANGGTSIVEDVHVRDCTFKGTKNGAR  279 (400)
Q Consensus       214 ~n~~i~~~dD~i~i~s~-----------~~ni~i~n~~~--~~~~-gi~igs~g~~~~~~~i~ni~v~N~~~~~~~~gi~  279 (400)
                      +||+|.++||||+++++           ++||+|+||+|  ..+| |++|||++    .+.++||+|+||++.++.+|++
T Consensus       252 ~n~~i~~gDDcIaiksg~~~dg~~~~~ps~nI~I~n~~~~~~~gh~gisiGS~~----~~~v~nV~v~n~~~~~t~~Gir  327 (448)
T 3jur_A          252 EKCRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSEM----SGGVRNVVARNNVYMNVERALR  327 (448)
T ss_dssp             ESCEEEESSEEEEEBCCCHHHHHHHCCCEEEEEEESCEEECSSCSEEEEECSSC----TTCEEEEEEESCEEESCSEEEE
T ss_pred             EeeEEEeCCCcEEeccCccccccccCCCceeEEEEEeEEecCCCcceEEECCcc----cCcEEEEEEEEEEEecccceEE
Confidence            99999999999999997           89999999999  6677 89999984    5799999999999999999999


Q ss_pred             EEeecCCCeeEEeEEEEeEEEecCCccE-EEEeeecCCCCCCCCCCcceeEEeEEEEeEEEecCCcceEEEEecCCCCee
Q 041224          280 IKTWQGGSGHARRISFERIRLESSDNPI-IIDQYYCGPNGDCKNQTSAVKVSDVSYIGFQGTSSTEEAVQLSCSESVGCT  358 (400)
Q Consensus       280 i~~~~~~~g~i~nI~f~ni~~~~~~~~i-~i~~~~~~~~~~~~~~~~~~~i~nItf~nI~~~~~~~~~i~i~~~~~~~~~  358 (400)
                      ||++.+++|.|+||+|+||+|+++.+|+ .|++.|+...     +...+.|+||+|+||+++. ...++.+.|.++.||+
T Consensus       328 IKt~~g~gG~v~nI~f~ni~m~~v~~~~i~I~~~Y~~~~-----~~~~~~i~nI~~~NI~~t~-~~~~i~i~g~~~~p~~  401 (448)
T 3jur_A          328 LKTNSRRGGYMENIFFIDNVAVNVSEEVIRINLRYDNEE-----GEYLPVVRSVFVKNLKATG-GKYAVRIEGLENDYVK  401 (448)
T ss_dssp             EECCTTTCSEEEEEEEESCEEEEESSEEEEEESCGGGCC-----CSCCCEEEEEEEESCEEEE-CSEEEEEECBTTBCEE
T ss_pred             EEEEcCCCceEeeEEEEEEEEECCccccEEEEeeccCCC-----CCCCceEEEEEEEeEEEEe-cceEEEEEeCCCCCEe
Confidence            9999988899999999999999999998 9999987641     2245689999999999998 4578999999999999


Q ss_pred             cEEEEeEEEEecC
Q 041224          359 DIKINNIDITHSD  371 (400)
Q Consensus       359 ni~~~nv~i~~~~  371 (400)
                      ||+|+||+++...
T Consensus       402 ~I~~~nv~i~~~~  414 (448)
T 3jur_A          402 DILISDTIIEGAK  414 (448)
T ss_dssp             EEEEEEEEEESCS
T ss_pred             eEEEEEEEEEccc
Confidence            9999999998654
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>2x3h_A K5 lyase, K5A lyase; bacteriophage, glycosaminoglycan; 1.60A {Enterobacteria phage k1-5} Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>3b4n_A Endo-pectate lyase; pectin, galacturonic acid, right-handed parallel beta helix fold; 1.45A {Erwinia chrysanthemi} PDB: 3b8y_A* 3b90_A Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>2v5i_A Salmonella typhimurium DB7155 bacteriophage DET7 tailspike; O-antigen binding and hydrolysis, beta-helix, viral protein; 1.60A {Bacteriophage} Back     alignment and structure
>2xc1_A Bifunctional tail protein; hydrolase, endoglycosidase, salmonella phage P22; HET: PE4; 1.65A {Enterobacteria phage P22} PDB: 1lkt_A Back     alignment and structure
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A* Back     alignment and structure
>2vfm_A Bifunctional tail protein; P22 tailspike protein, salmonella bacteriophage P22, protein folding, protein stability; 1.50A {Enterobacteria phage P22} PDB: 2vfp_A 2vfo_A 2vfq_A 2vfn_A 1tsp_A 1qrb_A 1qq1_A 1qrc_A 1tyu_A* 1tyv_A 1tyw_A* 1tyx_A* 1qa2_A 1clw_A 1qa3_A 1qa1_A Back     alignment and structure
>3riq_A Tailspike protein; right handed beta-helix, endorhamnosidase, lipopolysaccharide, viral protein; 1.50A {Siphovirus 9na} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 400
d1rmga_422 b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus a 2e-86
d1czfa_335 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 6e-75
d1ogmx2373 b.80.1.10 (X:202-574) Dextranase, catalytic domain 2e-74
d1ia5a_339 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 3e-68
d1nhca_336 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 3e-64
d1k5ca_333 b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum p 7e-64
d1hg8a_349 b.80.1.3 (A:) Polygalacturonase {Fusarium monilifo 2e-61
d1bhea_376 b.80.1.3 (A:) Polygalacturonase {Erwinia carotovor 3e-54
d1o88a_353 b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, 9e-06
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Length = 422 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

 Score =  266 bits (682), Expect = 2e-86
 Identities = 81/360 (22%), Positives = 151/360 (41%), Gaps = 24/360 (6%)

Query: 33  VSVIQFGAVGDGETDDSQAFLKAWKSICGSKSNAAPLLVPAGKTFLLNPVSFQGPCKSSS 92
            +++ +GAV D  TD   A   AW + C S      + +P+G   L   V+  G      
Sbjct: 21  CNILSYGAVADNSTDVGPAITSAWAA-CKS---GGLVYIPSGNYALNTWVTLTGGSA--- 73

Query: 93  INVQIQGNIVAPHSSAWDGHDKKKWLLFSNVNGLTVNGNGKIDGKGASWWSNKQNQRPTA 152
             +Q+ G I    +++ +          ++    +    G + G G  + +         
Sbjct: 74  TAIQLDGIIYRTGTASGN---MIAVTDTTDFELFSSTSKGAVQGFGYVYHAEGTY-GARI 129

Query: 153 LSFGSCNNLVFRGLTHVDSPGNHISVYGCNDVSISNLKIIAPESSPNTDGIDITHSSNVQ 212
           L      +     +  VD+P  H ++  C+D  + N+ I         DGID+  S N+ 
Sbjct: 130 LRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRGGNE-GGLDGIDVWGS-NIW 187

Query: 213 IRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGSLGANGGTSIVEDVHVRDCTFK 272
           + D  +   D+CV + +  +NI V  + C    G ++GSLGA+     V D+  R+    
Sbjct: 188 VHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGADTD---VTDIVYRNVYTW 244

Query: 273 GTKNGARIKTWQGGSGHARRISFERIRLESSDNPIIIDQYYCGPNGDCKNQTSAVKVSDV 332
            +     IK+  GGSG    +  E      +   + ID Y+             V+++++
Sbjct: 245 SSNQMYMIKSN-GGSGTVSNVLLENFIGHGNAYSLDIDGYWSSMTA---VAGDGVQLNNI 300

Query: 333 SYIGFQGTSS---TEEAVQLSCSESVGCTDIKINNIDITHSDSGKDTRASCINAHGELYG 389
           +   ++GT +   T   +++ CS++  CTD+ + +I I  ++SG      C +A+G  Y 
Sbjct: 301 TVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAIW-TESGSSELYLCRSAYGSGYC 359
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Length = 335 Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Length = 373 Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339 Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Length = 336 Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Length = 333 Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Length = 349 Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Length = 376 Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Length = 353 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query400
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 100.0
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 100.0
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 100.0
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 100.0
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 100.0
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 100.0
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 99.87
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 99.85
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 99.85
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 99.84
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 99.83
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 99.79
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 99.72
d1h80a_464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 99.65
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 99.64
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 98.69
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 98.52
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.44
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 98.2
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 98.15
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 97.93
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.76
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 97.64
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.62
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 97.55
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 97.5
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 97.48
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 97.45
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 97.35
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 97.09
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 96.6
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 96.4
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 96.37
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 94.43
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 92.33
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 91.76
d1tywa_554 P22 tailspike protein {Salmonella phage P22 [TaxId 90.14
d1h80a_ 464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 85.83
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 85.13
d1v0ea1 516 Endo-alpha-sialidase {Bacteriophage K1F [TaxId: 34 81.52
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

Probab=100.00  E-value=1.4e-63  Score=494.00  Aligned_cols=338  Identities=24%  Similarity=0.425  Sum_probs=296.9

Q ss_pred             CCeeEEeeecCccCCCCcchHHHHHHHHHHHhcCCCCCceEEecCCCEEEee-eeeecCCCCCCCeEEEEeEEEEccCC-
Q 041224           29 YASSVSVIQFGAVGDGETDDSQAFLKAWKSICGSKSNAAPLLVPAGKTFLLN-PVSFQGPCKSSSINVQIQGNIVAPHS-  106 (400)
Q Consensus        29 ~~~~~nv~d~Ga~gdg~tddt~aiq~Ai~~a~~~~~gg~~v~iP~G~~Y~~~-~l~l~~~~ks~~v~l~~~g~i~~~~~-  106 (400)
                      +.++|||+||||+|||++|||+|||+|| +||+   +|++|+||+| +|++. +|.|+++  + ++.|+++|+|+++.+ 
T Consensus        17 ~~k~~nV~dfGA~gDG~tDdT~Ai~~Ai-~ac~---~gg~V~iP~G-ty~l~~~i~l~g~--~-~~~l~~~G~i~~~~~~   88 (422)
T d1rmga_          17 ATKTCNILSYGAVADNSTDVGPAITSAW-AACK---SGGLVYIPSG-NYALNTWVTLTGG--S-ATAIQLDGIIYRTGTA   88 (422)
T ss_dssp             HHCEEEGGGGTCCCSSSSBCHHHHHHHH-HHHT---BTCEEEECSS-EEEECSCEEEESC--E-EEEEEECSEEEECCCC
T ss_pred             CCcEEEEecCCCCCCCCccCHHHHHHHH-HhcC---CCCEEEECCC-cEEEeCcEEEcCC--C-ceEEEEeEEEEeccCC
Confidence            4579999999999999999999999999 6887   3679999999 99885 7999764  4 788999999998776 


Q ss_pred             CCccCCCccccEEEeeeeceEEecCeeEeCCCccccccCCCCCCceEEEeeeCcEEEEceEEeCCCCceEEEEeecceEE
Q 041224          107 SAWDGHDKKKWLLFSNVNGLTVNGNGKIDGKGASWWSNKQNQRPTALSFGSCNNLVFRGLTHVDSPGNHISVYGCNDVSI  186 (400)
Q Consensus       107 ~~~~~~~~~~~i~~~~~~nv~I~G~G~idg~g~~~~~~~~~~rp~~i~~~~~~nv~i~~v~i~ns~~~~i~~~~~~nv~i  186 (400)
                      ..+.    ..+....+.+.+.+.|.|+|||+|+.||... ..+|++++|.+|+|++|++++++|++.|++.+..|++++|
T Consensus        89 ~~~~----~~~~~~~~~~~~~~~g~G~IdG~G~~~~~~~-~~~p~~l~~~~~~n~~i~git~~nsp~~~i~i~~c~~v~i  163 (422)
T d1rmga_          89 SGNM----IAVTDTTDFELFSSTSKGAVQGFGYVYHAEG-TYGARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEV  163 (422)
T ss_dssp             SSEE----EEEEEEEEEEEECSSSCCEEECCTHHHHTTT-CCCCEEEEEEEEEEEEEEEEEEECCSSCSEEEEEEEEEEE
T ss_pred             ccCE----EEeccCccEEEEEeecceEEecCcceecCCC-CCCCcEEEEEeeeeeEEECcEecCCCceEEEEeccccEEE
Confidence            4432    2344445556677788999999999999754 3689999999999999999999999999999999999999


Q ss_pred             eceEEECCCCCCCCCeeeecCcccEEEEeeEEecCCceEEEcCCceeEEEEeeEEcCCceEEEeccCCCCCCCCEEEEEE
Q 041224          187 SNLKIIAPESSPNTDGIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGSLGANGGTSIVEDVHV  266 (400)
Q Consensus       187 ~~~~I~~~~~~~n~DGi~i~~s~nV~I~n~~i~~~dD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~~~~~~i~ni~v  266 (400)
                      +|++|.++ +.+|+||||+.+ +||+|+||+|.++||||+++++++||+|+|++|..+||++|||++.   ...++||+|
T Consensus       164 ~nv~I~~~-~~~NtDGIdi~~-snv~I~n~~i~~gDDcIaiks~s~nI~i~n~~c~~g~GisiGs~g~---~~~V~nV~v  238 (422)
T d1rmga_         164 YNMAIRGG-NEGGLDGIDVWG-SNIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGA---DTDVTDIVY  238 (422)
T ss_dssp             EEEEEECC-SSTTCCSEEEEE-EEEEEEEEEEESSSEEEEEEEEEEEEEEEEEEEESSSEEEEEEECT---TEEEEEEEE
T ss_pred             EeeEEcCC-CCCccceEeecc-cEEEEEeeEEEcCCCccccCCCCccEEEEeeEEccccceeEeeccC---CCCEEEEEE
Confidence            99999986 457999999976 5899999999999999999999999999999999999999999864   467999999


Q ss_pred             EeeEEeCCcceEEEEeecCCCeeEEeEEEEeEEEecCCccEEEEeeecCCCCCCCCCCcceeEEeEEEEeEEEecC---C
Q 041224          267 RDCTFKGTKNGARIKTWQGGSGHARRISFERIRLESSDNPIIIDQYYCGPNGDCKNQTSAVKVSDVSYIGFQGTSS---T  343 (400)
Q Consensus       267 ~N~~~~~~~~gi~i~~~~~~~g~i~nI~f~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nItf~nI~~~~~---~  343 (400)
                      +||++.++.+++++|++. +.|.|+||+|+||+++++++||.|+++|+....   ....++.|+||+|+||+++..   .
T Consensus       239 ~n~~~~~s~~g~~ik~~~-g~G~V~nI~f~Ni~~~nv~~pI~Id~~y~~~~~---~~~~~v~isnIt~~Ni~GT~~~~~~  314 (422)
T d1rmga_         239 RNVYTWSSNQMYMIKSNG-GSGTVSNVLLENFIGHGNAYSLDIDGYWSSMTA---VAGDGVQLNNITVKNWKGTEANGAT  314 (422)
T ss_dssp             EEEEEESSSCSEEEEEBB-CCEEEEEEEEEEEEEEEESCSEEEETBCTTSCC---BSSSCCEEEEEEEEEEEEEESCTTT
T ss_pred             EeEEEeCCCceEEEEEcC-CCceecceEEEEEEEecccccEEEecccCCCCC---CCCCCeEEEEEEEEeEEEEecCCcc
Confidence            999999999999999874 469999999999999999999999999987543   223567899999999999874   3


Q ss_pred             cceEEEEecCCCCeecEEEEeEEEEecCCCCCcceeeecceecccc
Q 041224          344 EEAVQLSCSESVGCTDIKINNIDITHSDSGKDTRASCINAHGELYG  389 (400)
Q Consensus       344 ~~~i~i~~~~~~~~~ni~~~nv~i~~~~~~~~~~~~c~~~~~~~~~  389 (400)
                      +.++.+.|++..||+||+|+||+++.++ +..+.+.|+|++|...-
T Consensus       315 ~~~i~l~Cs~~~pc~ni~l~ni~l~~~~-g~~~~~~C~na~G~~~~  359 (422)
T d1rmga_         315 RPPIRVVCSDTAPCTDLTLEDIAIWTES-GSSELYLCRSAYGSGYC  359 (422)
T ss_dssp             SCSEEEECBTTBCEEEEEEEEEEEEESS-SSCEEEEEESEEEESTT
T ss_pred             cccEEEEcCCCCCCcceEEEEEEEEcCC-CCCcceEEECceeeEEe
Confidence            4689999999999999999999999988 77778899999997553
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1tywa_ b.80.1.6 (A:) P22 tailspike protein {Salmonella phage P22 [TaxId: 10754]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1v0ea1 b.68.1.2 (A:245-760) Endo-alpha-sialidase {Bacteriophage K1F [TaxId: 344021]} Back     information, alignment and structure