Citrus Sinensis ID: 041241

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-----
Protein Sequence
MSLEIQANERIFLSFYFLVDHNEDINAVTFDNAPENLQMTSNEIKKDIVSCAAVETTNIIIKEMGDILFSILIDESCDIFTKEQMAVVLRYVDKNGYVVEHFIGIEHVTSTTSISLKEALDKLFSRHGLSMSRLHRQGYDEASNM
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHcccHHHHHHHHcccccccEEcHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccccEEEEEEEEEcccccEEEEEEEEEEcccccHHHHHHHHHHHHHHcccccccEEEEEccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHHHHHcccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEccccccHHHHEEEEEEEEcccccEEEEEEEEEEcccccHHHHHHHHHHHHHHccccHHHcccccccccccc
Coil and Loop (DISEMBL)
MSLEIQANERIFLSFYFlvdhnedinavtfdnapenlqmTSNEIKKDIVSCAAVETTNIIIKEMGDILFSILIDESCDIFTKEQMAVVLRYVDKNGYVVEHFIGIEHVTSTTSISLKEALDKLFSrhglsmsrlhrqgydeasnm
Flexible Loop (DISEMBL)
MSLEIQANERIFLSFYFLVDHNEDINAVTFDNAPENLQMTSNEIKKDIVSCAAVETTNIIIKEMGDILFSILIDESCDIFTKEQMAVVLRYVDKNGYVVEHFIGIEHVTSTTSISLKEALDKLFsrhglsmsrlhrqgydeasnm
Low Complexity Region (SEG)
MSLEIQANERIFLSFYFLVDHNEDINAVTFDNAPENLQMTSNEIKKDIVSCAAVETTNIIIKEMGDILFSILIDESCDIFTKEQMAVVLRYVDKNGYVVEHFIGIEHVTSTTSISLKEALDKLFSRHGLSMSRLHRQGYDEASNM
Disordered region (IsUnstruct)
*******NERIFLSFYFLVDHNEDINAVTFDNAPENLQMTSNEIKKDIVSCAAVETTNIIIKEMGDILFSILIDESCDIFTKEQMAVVLRYVDKNGYVVEHFIGIEHVTSTTSISLKEALDKLF*********************
Disordered Region (DISOPRED)
****IQANERIFLSFYFLVDHNEDINAVTFDNAPENLQMTSNEIKKDIVSCAAVETTNIIIKEMGDILFSILIDESCDIFTKEQMAVVLRYVDKNGYVVEHFIGIEHVTSTTSISLKEALDKLFSRHGLSMSRLHRQGYDEASNM
Disordered Region (DISEMBL)
MSLEIQANERIFLSFYFLVDHNEDINAVTFDNAPENLQMTSNEIKKDIVSCAAVETTNIIIKEMGDILFSILIDESCDIFTKEQMAVVLRYVDKNGYVVEHFIGIEHVTSTTSISLKEALDKLFSRHGLSMSRLHRQGYDEASNM
Disordered Region (DISPRO)
MSLEIQANERIFLSFYFLVDHNEDINAVTFDNAPENLQMTSNEIKKDIVSCAAVETTNIIIKEMGDILFSILIDESCDIFTKEQMAVVLRYVDKNGYVVEHFIGIEHVTSTTSISLKEALDKLFSRHGLSMSRLH**GYD*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLEIQANERIFLSFYFLVDHNEDINAVTFDNAPENLQMTSNEIKKDIVSCAAVETTNIIIKEMGDILFSILIDESCDIFTKEQMAVVLRYVDKNGYVVEHFIGIEHVTSTTSISLKEALDKLFSRHGLSMSRLHRQGYDEASNM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	145	2.2.26 [Sep-21-2011]
Q5SVZ6	1142	Zinc finger MYM-type prot	yes	no	0.724	0.091	0.284	7e-07

>sp|Q5SVZ6|ZMYM1_HUMAN Zinc finger MYM-type protein 1 OS=Homo sapiens GN=ZMYM1 PE=2 SV=1

 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 4/109 (3%)

Query: 41  SNEIKKDIVSCAAVETTNIIIKEMGDI-LFSILIDESCDIFTKEQMAVVLRYVDKNGYVV 99
           S +I+ DI+     E    I+ E+ D   FSI+ DE+ +   KEQ+++ +RY  K+   +
Sbjct: 614 STQIQSDIIEIIKTEMLQDIVNEINDSSAFSIICDETINSAMKEQLSICVRYPQKSSKAI 673

Query: 100 ---EHFIGIEHVTSTTSISLKEALDKLFSRHGLSMSRLHRQGYDEASNM 145
              E F+G       T   L   +     + G+ M ++H Q YD  +N+
Sbjct: 674 LIKERFLGFVDTEEMTGTHLHRTIKTYLQQIGVDMDKIHGQAYDSTTNL 722

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	145
224126313	788	predicted protein [Populus trichocarpa]	0.979	0.180	0.587	1e-38
242080863	776	hypothetical protein SORBIDRAFT_07g00579	0.889	0.166	0.519	2e-32
18854992	1283	putative transposase [Oryza sativa Japon	0.979	0.110	0.475	4e-32
32488762	897	OSJNBb0016D16.6 [Oryza sativa Japonica G	0.882	0.142	0.5	7e-32
224042031	897	putative transposase [Oryza sativa Japon	0.882	0.142	0.5	8e-32
15221982	769	TTF-type zinc finger protein with HAT di	0.889	0.167	0.534	3e-31
8954063	811	Contains similarity to a transposable el	0.889	0.159	0.534	3e-31
116317825	793	OSIGBa0126J24.6 [Oryza sativa Indica Gro	0.889	0.162	0.496	3e-31
15230069	505	General transcription factor 2-related z	0.889	0.255	0.527	5e-31
15233987	664	uncharacterized protein [Arabidopsis tha	0.889	0.194	0.527	1e-30

>gi|224126313|ref|XP_002319808.1| predicted protein [Populus trichocarpa] gi|222858184|gb|EEE95731.1| predicted protein [Populus trichocarpa]

 Score =  164 bits (415), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 84/143 (58%), Positives = 107/143 (74%), Gaps = 1/143 (0%)

Query: 4   EIQANERIFLSF-YFLVDHNEDINAVTFDNAPENLQMTSNEIKKDIVSCAAVETTNIIIK 62
           E  +N+  +L   +FL  +NE I  VTF  AP + ++TS +I+KDI   AA E TN+IIK
Sbjct: 216 ECSSNQGNYLELLHFLSRNNEAIKRVTFSEAPRHNKLTSPDIQKDITQAAAEEITNVIIK 275

Query: 63  EMGDILFSILIDESCDIFTKEQMAVVLRYVDKNGYVVEHFIGIEHVTSTTSISLKEALDK 122
           ++GD LFSILIDES DI  KEQMAVVLRYVD NG+++E F+GI+HV  TT+ SLK A++ 
Sbjct: 276 DLGDSLFSILIDESRDISIKEQMAVVLRYVDNNGHIIERFLGIQHVRDTTASSLKAAIEA 335

Query: 123 LFSRHGLSMSRLHRQGYDEASNM 145
           LFS+HGLS+SRL  QGYD ASNM
Sbjct: 336 LFSKHGLSISRLRGQGYDGASNM 358

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242080863|ref|XP_002445200.1| hypothetical protein SORBIDRAFT_07g005790 [Sorghum bicolor] gi|241941550|gb|EES14695.1| hypothetical protein SORBIDRAFT_07g005790 [Sorghum bicolor]

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 67/129 (51%), Positives = 94/129 (72%)

Query: 17  FLVDHNEDINAVTFDNAPENLQMTSNEIKKDIVSCAAVETTNIIIKEMGDILFSILIDES 76
           +L ++ ED+N V   NAP+N ++TS  I+K++++C A ETT +II ++GD  F+IL DES
Sbjct: 219 WLAENFEDVNRVGLKNAPKNNKLTSPRIQKELINCCAKETTKLIIDDLGDDYFAILADES 278

Query: 77  CDIFTKEQMAVVLRYVDKNGYVVEHFIGIEHVTSTTSISLKEALDKLFSRHGLSMSRLHR 136
            D++ KEQ+A+ LRYVDK G VVE F+G+ HV  TTS +LK A++ L   H LS+SR+  
Sbjct: 279 SDVYQKEQLALCLRYVDKKGQVVERFLGVVHVGDTTSATLKLAIETLLMEHSLSLSRIRG 338

Query: 137 QGYDEASNM 145
           QGYD ASNM
Sbjct: 339 QGYDGASNM 347

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18854992|gb|AAL79684.1|AC087599_3 putative transposase [Oryza sativa Japonica Group]

 Score =  142 bits (359), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 68/143 (47%), Positives = 100/143 (69%), Gaps = 1/143 (0%)

Query: 4   EIQANERIFLSFYFLVDHN-EDINAVTFDNAPENLQMTSNEIKKDIVSCAAVETTNIIIK 62
           E   N+  FL    ++  N E++  V  +NAP+N ++T+ EI+K I +C A ETT +I++
Sbjct: 452 EKSLNKGNFLEMLSMLAENFEEVGKVVLNNAPKNCKLTAPEIQKQIANCCAKETTKLIME 511

Query: 63  EMGDILFSILIDESCDIFTKEQMAVVLRYVDKNGYVVEHFIGIEHVTSTTSISLKEALDK 122
           ++GD  F+IL DES D++ KEQ+A+ LRYVDK G VVE F+G+ HV +TTS++LK A++ 
Sbjct: 512 DLGDEYFAILADESSDVYQKEQLALCLRYVDKKGRVVERFLGVVHVENTTSLTLKAAIES 571

Query: 123 LFSRHGLSMSRLHRQGYDEASNM 145
           L   H LS+S++  QGYD ASNM
Sbjct: 572 LLMEHSLSLSKVRGQGYDGASNM 594

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|32488762|emb|CAE04315.1| OSJNBb0016D16.6 [Oryza sativa Japonica Group]

 Score =  141 bits (356), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 64/128 (50%), Positives = 95/128 (74%)

Query: 18  LVDHNEDINAVTFDNAPENLQMTSNEIKKDIVSCAAVETTNIIIKEMGDILFSILIDESC 77
           L ++ E++  V  +NAP+N ++T+ EI+K I +C A ETT +I++++GD  F+IL DES 
Sbjct: 327 LAENFEEVGKVVLNNAPKNCKLTAPEIQKQIANCCAKETTKLIMEDLGDEYFAILADESS 386

Query: 78  DIFTKEQMAVVLRYVDKNGYVVEHFIGIEHVTSTTSISLKEALDKLFSRHGLSMSRLHRQ 137
           D++ KEQ+A+ LRYVDK G VVE F+G+ HV +TTS++LK A++ L   H LS+S++  Q
Sbjct: 387 DVYQKEQLALCLRYVDKKGRVVERFLGVVHVENTTSLTLKAAIESLLMEHSLSLSKVRGQ 446

Query: 138 GYDEASNM 145
           GYD ASNM
Sbjct: 447 GYDGASNM 454

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224042031|gb|ACN38703.1| putative transposase [Oryza sativa Japonica Group]

 Score =  141 bits (356), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 64/128 (50%), Positives = 95/128 (74%)

Query: 18  LVDHNEDINAVTFDNAPENLQMTSNEIKKDIVSCAAVETTNIIIKEMGDILFSILIDESC 77
           L ++ E++  V  +NAP+N ++T+ EI+K I +C A ETT +I++++GD  F+IL DES 
Sbjct: 327 LAENFEEVGKVVLNNAPKNCKLTAPEIQKQIANCCAKETTKLIMEDLGDEYFAILADESS 386

Query: 78  DIFTKEQMAVVLRYVDKNGYVVEHFIGIEHVTSTTSISLKEALDKLFSRHGLSMSRLHRQ 137
           D++ KEQ+A+ LRYVDK G VVE F+G+ HV +TTS++LK A++ L   H LS+S++  Q
Sbjct: 387 DVYQKEQLALCLRYVDKKGRVVERFLGVVHVENTTSLTLKAAIESLLMEHSLSLSKVRGQ 446

Query: 138 GYDEASNM 145
           GYD ASNM
Sbjct: 447 GYDGASNM 454

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15221982|ref|NP_173360.1| TTF-type zinc finger protein with HAT dimerization domain [Arabidopsis thaliana] gi|332191703|gb|AEE29824.1| TTF-type zinc finger protein with HAT dimerization domain [Arabidopsis thaliana]

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 69/129 (53%), Positives = 89/129 (68%)

Query: 17  FLVDHNEDINAVTFDNAPENLQMTSNEIKKDIVSCAAVETTNIIIKEMGDILFSILIDES 76
           +    NE +  V   NAP+N QMTS  I+KDIV C + E T  II+EM + +F +L+DES
Sbjct: 212 YTAGQNEVVKKVVLKNAPKNNQMTSPPIQKDIVHCFSKEVTRSIIEEMDNDVFGLLVDES 271

Query: 77  CDIFTKEQMAVVLRYVDKNGYVVEHFIGIEHVTSTTSISLKEALDKLFSRHGLSMSRLHR 136
            D   KEQMAVV R+VDK G V E FIG+ HV  T+S+SLK A+D LF+++GLS+ +L  
Sbjct: 272 ADASDKEQMAVVFRFVDKYGVVKERFIGVIHVQETSSLSLKSAIDSLFAKYGLSLKKLRG 331

Query: 137 QGYDEASNM 145
           QGYD ASNM
Sbjct: 332 QGYDGASNM 340

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8954063|gb|AAF82236.1|AC069143_12 Contains similarity to a transposable element Tip100 protein for transposase from Ipomoea purpurea gb|4063769 and is a member of the transmembrane 4 family PF|00335 [Arabidopsis thaliana]

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 69/129 (53%), Positives = 89/129 (68%)

Query: 17  FLVDHNEDINAVTFDNAPENLQMTSNEIKKDIVSCAAVETTNIIIKEMGDILFSILIDES 76
           +    NE +  V   NAP+N QMTS  I+KDIV C + E T  II+EM + +F +L+DES
Sbjct: 254 YTAGQNEVVKKVVLKNAPKNNQMTSPPIQKDIVHCFSKEVTRSIIEEMDNDVFGLLVDES 313

Query: 77  CDIFTKEQMAVVLRYVDKNGYVVEHFIGIEHVTSTTSISLKEALDKLFSRHGLSMSRLHR 136
            D   KEQMAVV R+VDK G V E FIG+ HV  T+S+SLK A+D LF+++GLS+ +L  
Sbjct: 314 ADASDKEQMAVVFRFVDKYGVVKERFIGVIHVQETSSLSLKSAIDSLFAKYGLSLKKLRG 373

Query: 137 QGYDEASNM 145
           QGYD ASNM
Sbjct: 374 QGYDGASNM 382

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116317825|emb|CAH65861.1| OSIGBa0126J24.6 [Oryza sativa Indica Group]

 Score =  139 bits (350), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 64/129 (49%), Positives = 94/129 (72%)

Query: 17  FLVDHNEDINAVTFDNAPENLQMTSNEIKKDIVSCAAVETTNIIIKEMGDILFSILIDES 76
           +L ++NE+++     NAP N  +TS +I+K+I+ C A+ET + I++E+GD  ++IL DES
Sbjct: 281 WLAENNEEVDKFVLKNAPGNCTLTSPDIQKEIIQCCAMETRDQILEEIGDNYYTILADES 340

Query: 77  CDIFTKEQMAVVLRYVDKNGYVVEHFIGIEHVTSTTSISLKEALDKLFSRHGLSMSRLHR 136
            D+  KEQ+A+ LRYVDK+G   E F+GI  V  TTS SLKEA++ L +RHGL+M+++  
Sbjct: 341 SDVSHKEQLALCLRYVDKSGRPCERFLGIVQVDDTTSSSLKEAIESLLTRHGLTMTQIRG 400

Query: 137 QGYDEASNM 145
           QGYD ASNM
Sbjct: 401 QGYDGASNM 409

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15230069|ref|NP_189620.1| General transcription factor 2-related zinc finger protein [Arabidopsis thaliana] gi|332644085|gb|AEE77606.1| General transcription factor 2-related zinc finger protein [Arabidopsis thaliana]

 Score =  139 bits (349), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 68/129 (52%), Positives = 90/129 (69%)

Query: 17  FLVDHNEDINAVTFDNAPENLQMTSNEIKKDIVSCAAVETTNIIIKEMGDILFSILIDES 76
           ++   NE +  V   NAP+N QMTS  I+KDIV C + E T  II+EM + +F +L+DES
Sbjct: 80  YIAGQNEVVKKVVLKNAPKNNQMTSPPIQKDIVHCFSEEVTRSIIEEMDNDVFGLLVDES 139

Query: 77  CDIFTKEQMAVVLRYVDKNGYVVEHFIGIEHVTSTTSISLKEALDKLFSRHGLSMSRLHR 136
            D   KEQMAVV R+VDK G V E FIG+ HV  T+S+SLK A+D LF+++GLS+ +L  
Sbjct: 140 ADASDKEQMAVVFRFVDKYGVVKERFIGVIHVQETSSLSLKSAIDSLFAKYGLSLKKLRG 199

Query: 137 QGYDEASNM 145
           +GYD ASNM
Sbjct: 200 KGYDGASNM 208

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15233987|ref|NP_192704.1| uncharacterized protein [Arabidopsis thaliana] gi|4538896|emb|CAB39633.1| putative protein [Arabidopsis thaliana] gi|7267661|emb|CAB78089.1| putative protein [Arabidopsis thaliana] gi|332657378|gb|AEE82778.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 68/129 (52%), Positives = 88/129 (68%)

Query: 17  FLVDHNEDINAVTFDNAPENLQMTSNEIKKDIVSCAAVETTNIIIKEMGDILFSILIDES 76
           +    NE +  V   NAP+N QMTS  I+KDIV C + E T  II+EM + +F +L+DES
Sbjct: 176 YTAGQNEVVKKVVLKNAPKNNQMTSPPIQKDIVHCFSEEVTRSIIEEMDNDVFGLLVDES 235

Query: 77  CDIFTKEQMAVVLRYVDKNGYVVEHFIGIEHVTSTTSISLKEALDKLFSRHGLSMSRLHR 136
            D   KEQM VV R+VDK G V E FIG+ HV  T+S+SLK A+D LF+++GLS+ +L  
Sbjct: 236 ADASNKEQMTVVFRFVDKYGVVKERFIGVIHVKETSSLSLKSAIDSLFAKYGLSLKKLRG 295

Query: 137 QGYDEASNM 145
           QGYD ASNM
Sbjct: 296 QGYDGASNM 304

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	145
TAIR|locus:2829839	505	AT3G29763 "AT3G29763" [Arabido	0.979	0.281	0.503	2.3e-31
TAIR|locus:2118430	664	AT4G09660 [Arabidopsis thalian	0.979	0.213	0.503	2e-30
TAIR|locus:2202165	769	AT1G19260 [Arabidopsis thalian	0.979	0.184	0.503	3e-30
TAIR|locus:4515102803	592	AT2G06541 [Arabidopsis thalian	0.958	0.234	0.464	1.1e-26
TAIR|locus:2829849	536	AT3G29765 [Arabidopsis thalian	0.737	0.199	0.560	7.7e-26
TAIR|locus:2033523	496	AT1G41920 "AT1G41920" [Arabido	0.944	0.276	0.402	1.4e-19
TAIR|locus:5019474775	393	AT3G31402 "AT3G31402" [Arabido	0.772	0.284	0.375	2.2e-15
TAIR|locus:2036700	206	AT1G42710 "AT1G42710" [Arabido	0.434	0.305	0.555	3.4e-13
TAIR|locus:2093847	522	AT3G29450 "AT3G29450" [Arabido	0.558	0.155	0.426	9.6e-11
UNIPROTKB|Q5SW02	1067	ZMYM1 "Zinc finger MYM-type pr	0.724	0.098	0.284	2.2e-08

TAIR|locus:2829839 AT3G29763 "AT3G29763" [Arabidopsis thaliana (taxid:3702)]

 Score = 345 (126.5 bits), Expect = 2.3e-31, P = 2.3e-31
 Identities = 72/143 (50%), Positives = 95/143 (66%)

Query:     4 EIQANERIFLSFY-FLVDHNEDINAVTFDNAPENLQMTSNEIKKDIVSCAAVETTNIIIK 62
             E   N+  FL    ++   NE +  V   NAP+N QMTS  I+KDIV C + E T  II+
Sbjct:    66 EESTNKGNFLELLKYIAGQNEVVKKVVLKNAPKNNQMTSPPIQKDIVHCFSEEVTRSIIE 125

Query:    63 EMGDILFSILIDESCDIFTKEQMAVVLRYVDKNGYVVEHFIGIEHVTSTTSISLKEALDK 122
             EM + +F +L+DES D   KEQMAVV R+VDK G V E FIG+ HV  T+S+SLK A+D 
Sbjct:   126 EMDNDVFGLLVDESADASDKEQMAVVFRFVDKYGVVKERFIGVIHVQETSSLSLKSAIDS 185

Query:   123 LFSRHGLSMSRLHRQGYDEASNM 145
             LF+++GLS+ +L  +GYD ASNM
Sbjct:   186 LFAKYGLSLKKLRGKGYDGASNM 208

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2118430 AT4G09660 [Arabidopsis thaliana (taxid:3702)]

 Score = 343 (125.8 bits), Expect = 2.0e-30, P = 2.0e-30
 Identities = 72/143 (50%), Positives = 93/143 (65%)

Query:     4 EIQANERIFLSFY-FLVDHNEDINAVTFDNAPENLQMTSNEIKKDIVSCAAVETTNIIIK 62
             E   N+  FL    +    NE +  V   NAP+N QMTS  I+KDIV C + E T  II+
Sbjct:   162 EESTNKGNFLELLKYTAGQNEVVKKVVLKNAPKNNQMTSPPIQKDIVHCFSEEVTRSIIE 221

Query:    63 EMGDILFSILIDESCDIFTKEQMAVVLRYVDKNGYVVEHFIGIEHVTSTTSISLKEALDK 122
             EM + +F +L+DES D   KEQM VV R+VDK G V E FIG+ HV  T+S+SLK A+D 
Sbjct:   222 EMDNDVFGLLVDESADASNKEQMTVVFRFVDKYGVVKERFIGVIHVKETSSLSLKSAIDS 281

Query:   123 LFSRHGLSMSRLHRQGYDEASNM 145
             LF+++GLS+ +L  QGYD ASNM
Sbjct:   282 LFAKYGLSLKKLRGQGYDGASNM 304

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2202165 AT1G19260 [Arabidopsis thaliana (taxid:3702)]

 Score = 343 (125.8 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 72/143 (50%), Positives = 94/143 (65%)

Query:     4 EIQANERIFLSFY-FLVDHNEDINAVTFDNAPENLQMTSNEIKKDIVSCAAVETTNIIIK 62
             E   N+  F+    +    NE +  V   NAP+N QMTS  I+KDIV C + E T  II+
Sbjct:   198 EESTNKGNFVELLKYTAGQNEVVKKVVLKNAPKNNQMTSPPIQKDIVHCFSKEVTRSIIE 257

Query:    63 EMGDILFSILIDESCDIFTKEQMAVVLRYVDKNGYVVEHFIGIEHVTSTTSISLKEALDK 122
             EM + +F +L+DES D   KEQMAVV R+VDK G V E FIG+ HV  T+S+SLK A+D 
Sbjct:   258 EMDNDVFGLLVDESADASDKEQMAVVFRFVDKYGVVKERFIGVIHVQETSSLSLKSAIDS 317

Query:   123 LFSRHGLSMSRLHRQGYDEASNM 145
             LF+++GLS+ +L  QGYD ASNM
Sbjct:   318 LFAKYGLSLKKLRGQGYDGASNM 340

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:4515102803 AT2G06541 [Arabidopsis thaliana (taxid:3702)]

 Score = 307 (113.1 bits), Expect = 1.1e-26, P = 1.1e-26
 Identities = 65/140 (46%), Positives = 88/140 (62%)

Query:     7 ANERIFLSFY-FLVDHNEDINAVTFDNAPENLQMTSNEIKKDIVSCAAVETTNIIIKEMG 65
             AN   FL    +    NE ++ V  +NAP+N QM   +I++DIV C   E    II+E+ 
Sbjct:   134 ANRGNFLELVKYTAGQNEVVSKVVLENAPKNNQMVCPKIQRDIVHCFVEEVIRSIIQEVD 193

Query:    66 DILFSILIDESCDIFTKEQMAVVLRYVDKNGYVVEHFIGIEHVTSTTSISLKEALDKLFS 125
               +F +++DES DIF KEQM VV R+VDK+  V E FIG+ HV  T S  LK A+D LF+
Sbjct:   194 HDVFCLMVDESADIFDKEQMVVVFRFVDKHATVKERFIGLIHVKETFSAFLKCAIDSLFA 253

Query:   126 RHGLSMSRLHRQGYDEASNM 145
             +HGLS+ ++  Q YD ASNM
Sbjct:   254 KHGLSIKQIRGQDYDGASNM 273

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2829849 AT3G29765 [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 7.7e-26, P = 7.7e-26
 Identities = 60/107 (56%), Positives = 78/107 (72%)

Query:    39 MTSNEIKKDIVSCAAVETTNIIIKEMGDILFSILIDESCDIFTKEQMAVVLRYVDKNGYV 98
             MTS  I+KDIV C + E T  II+EM + +F +L+DES D   KEQMAVV R+VDK G V
Sbjct:     1 MTSPPIQKDIVHCFSEEVTRSIIEEMDNDVFGLLVDESADASDKEQMAVVFRFVDKYGVV 60

Query:    99 VEHFIGIEHVTSTTSISLKEALDKLFSRHGLSMSRLHRQGYDEASNM 145
              E FIG+ HV  T+S+SLK A+D LF+++GLS+ +L  +GYD ASNM
Sbjct:    61 KERFIGVIHVQETSSLSLKSAIDSLFAKYGLSLKKLRGKGYDGASNM 107

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2033523 AT1G41920 "AT1G41920" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 1.4e-19, P = 1.4e-19
 Identities = 58/144 (40%), Positives = 90/144 (62%)

Query:     7 ANERIFLSFY-FLVDHNEDINAVTFDNAPENLQMTSNEIKKDIV--SCAAVETTNIIIKE 63
             AN   FL    + V  NE I+ V  +NAP+N QM  +E+ + ++  +   V ++ +++  
Sbjct:    24 ANRGNFLELVKYTVGQNEVISKVVLENAPKNNQMVFDEMSEPLIPETRDPVPSSFLLLDL 83

Query:    64 MGDILFSILIDESC--DIFTKEQMAVVLRYVDKNGYVVEHFIGIEHVTSTTSISLKEALD 121
             + D  + ++  ++   ++  KEQMAVV R+VDK+G V E FIG+ HV  T+S SLK A+D
Sbjct:    84 ILD--YPVVWQQTVQSNVSDKEQMAVVFRFVDKHGTVKERFIGLIHVKETSSASLKCAID 141

Query:   122 KLFSRHGLSMSRLHRQGYDEASNM 145
              LF++ GLSM +L  QGYD A+NM
Sbjct:   142 SLFAKRGLSMKQLRGQGYDGANNM 165

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:5019474775 AT3G31402 "AT3G31402" [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 2.2e-15, P = 2.2e-15
 Identities = 45/120 (37%), Positives = 73/120 (60%)

Query:    21 HNEDINAVTFDNAPENLQMTSNEIKKDIVSCAAVETTNIIIKEMGDILFSILIDESCDIF 80
             H +  N+    N  E L+ T+++   ++V   +V      I+E+   +F +L+DES D+ 
Sbjct:    59 HYKSENSANKGNFVELLKYTADQ--NEVVKVKSV------IEEIDHNVFGLLVDESADVS 110

Query:    81 TKEQMAVVLRYVDKNGYVVEHFIGIEHVTSTTSISLKEALDKLFSRHGLSMSRLHRQGYD 140
              KEQM +V R+ DK+G V E F+ I HV  T++ISLK A+D LF+++ L++ +   QGYD
Sbjct:   111 DKEQMTLVFRFFDKSGIVKERFLSIIHVKETSAISLKSAIDDLFAKYRLNIKKGRGQGYD 170

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2036700 AT1G42710 "AT1G42710" [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 35/63 (55%), Positives = 46/63 (73%)

Query:    83 EQMAVVLRYVDKNGYVVEHFIGIEHVTSTTSISLKEALDKLFSRHGLSMSRLHRQGYDEA 142
             EQMAVV R+VDK+G V E FI + HV  T+S S+K A+D LF+++GLS+  +  QGYD A
Sbjct:   120 EQMAVVFRFVDKSGTVKERFIEVVHVKETSSASVKSAIDDLFAKYGLSLKTVRGQGYDGA 179

Query:   143 SNM 145
             S M
Sbjct:   180 SIM 182

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2093847 AT3G29450 "AT3G29450" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 9.6e-11, P = 9.6e-11
 Identities = 35/82 (42%), Positives = 49/82 (59%)

Query:     7 ANERIFLSFY-FLVDHNEDINAVTFDNAPENLQMTSNEIKKDIVSCAAVETTNIIIKEMG 65
             AN   FL    +    NE ++ +  +NAP+N QM   +I+KDIV C A E    II+E+ 
Sbjct:   107 ANRENFLELVKYTAGQNEAVSKIVLENAPKNNQMACPKIQKDIVHCFAEEVIRSIIQEVD 166

Query:    66 DILFSILIDESCDIFTKEQMAV 87
               +F +++DES DI  KEQMAV
Sbjct:   167 HDVFWLMVDESADISDKEQMAV 188

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5SW02 ZMYM1 "Zinc finger MYM-type protein 1" [Homo sapiens (taxid:9606)]

 Score = 141 (54.7 bits), Expect = 2.2e-08, P = 2.2e-08
 Identities = 31/109 (28%), Positives = 53/109 (48%)

Query:    41 SNEIKKDIVSCAAVETTNIIIKEMGDI-LFSILIDESCDIFTKEQMAVVLRYVDKNGYVV 99
             S +I+ DI+     E    I+ E+ D   FSI+ DE+ +   KEQ+++ +RY  K+   +
Sbjct:   539 STQIQSDIIEIIKTEMLQDIVNEINDSSAFSIICDETINSAMKEQLSICVRYPQKSSKAI 598

Query:   100 ---EHFIGIEHVTSTTSISLKEALDKLFSRHGLSMSRLHRQGYDEASNM 145
                E F+G       T   L   +     + G+ M ++H Q YD  +N+
Sbjct:   599 LIKERFLGFVDTEEMTGTHLHRTIKTYLQQIGVDMDKIHGQAYDSTTNL 647

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	145
pfam14291	179	pfam14291, DUF4371, Domain of unknown function (DU	4e-32

>gnl|CDD|222655 pfam14291, DUF4371, Domain of unknown function (DUF4371)

 Score =  111 bits (281), Expect = 4e-32
 Identities = 42/68 (61%), Positives = 53/68 (77%)

Query: 78  DIFTKEQMAVVLRYVDKNGYVVEHFIGIEHVTSTTSISLKEALDKLFSRHGLSMSRLHRQ 137
           D+  KEQMAVVLRYVDK G V E F+G+ HV  TTS++LK A+D L ++HGLS+S++  Q
Sbjct: 106 DVSQKEQMAVVLRYVDKKGQVKERFLGVVHVEETTSLTLKSAIDSLLAKHGLSLSKVRGQ 165

Query: 138 GYDEASNM 145
           GYD ASNM
Sbjct: 166 GYDGASNM 173

Length = 179

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	145
PF14291	235	DUF4371: Domain of unknown function (DUF4371)	100.0
PF04937	153	DUF659: Protein of unknown function (DUF 659); Int	98.03
KOG1121	641	consensus Tam3-transposase (Ac family) [Replicatio	96.8

>PF14291 DUF4371: Domain of unknown function (DUF4371)

Probab=100.00  E-value=7.9e-44  Score=272.86  Aligned_cols=140  Identities=33%  Similarity=0.506  Sum_probs=134.7

Q ss_pred             ccCCChHHHHHHhHhhcCHHHHHHHhhcCCCcccccCcchHHHHHHHHHHHHHHHHHhhhccceeEEEecccccccccce
Q 041241            5 IQANERIFLSFYFLVDHNEDINAVTFDNAPENLQMTSNEIKKDIVSCAAVETTNIIIKEMGDILFSILIDESCDIFTKEQ   84 (145)
Q Consensus         5 ~~~~gnf~~ll~l~~~~~~~l~~~~l~~~~~~~~y~S~~~~~~ii~~ia~~i~~~i~~~l~~~~fSi~~DettDis~~~q   84 (145)
                      -.|+|||++|+++++++||.+++|+.+..+.+..|+|+++|+++ +++|+.+++.|++++++++|||++|||||+++++|
T Consensus        90 s~n~GNFl~ll~l~~~~d~~l~~~~~~~~~~~~~~~s~~iq~~i-~~~a~~v~~~I~~~v~~~~FSii~DettDis~~eQ  168 (235)
T PF14291_consen   90 SLNNGNFLELLELLAKYDPELKKHLSKNAPKNAKYSSKTIQNEI-EILADHVRQSIVEEVKSKYFSIIVDETTDISNKEQ  168 (235)
T ss_pred             ccccccHHHHHHHHHhhcccchhhhhcccccceeccHHHHHHHH-HHHHHHHHHHHHhhccccceeeeeeccccccccch
Confidence            35789999999999999999999966778888999999999998 99999999999999988999999999999999999


Q ss_pred             eEEEEEEeecCCceeeeeecceecccCchhHHHHHHHHHHHHcCCCCCCeeEEeecCCCCC
Q 041241           85 MAVVLRYVDKNGYVVEHFIGIEHVTSTTSISLKEALDKLFSRHGLSMSRLHRQGYDEASNM  145 (145)
Q Consensus        85 l~i~vryv~~~~~i~e~fl~~~~~~~~tae~i~~~i~~~l~~~~l~~~~~~~~~~Dgas~M  145 (145)
                      |+|+||||+.++.|+|+||+|.+++++||++|+++|++.|.++|||+++|+||||||||+|
T Consensus       169 l~i~vRyv~~~~~i~E~Fl~f~~~~~~ta~~l~~~i~~~L~~~~l~~~~~~gq~yDgas~M  229 (235)
T PF14291_consen  169 LSICVRYVDKDGKIKERFLGFVELEDTTAESLFNAIKDVLEKLGLDLSNCRGQCYDGASNM  229 (235)
T ss_pred             hhheeeeeccCcceeeeeeeeeccCCccHHHHHHHHHHHHHHcCCCHHHcCcccccChHhh
Confidence            9999999998889999999999999999999999999999999999999999999999998

>PF04937 DUF659: Protein of unknown function (DUF 659); InterPro: IPR007021 These are transposase-like proteins with no known function

Probab=98.03  E-value=1.9e-05  Score=56.95  Aligned_cols=72  Identities=24%  Similarity=0.207  Sum_probs=58.6

Q ss_pred             ceeEEEecccccccccceeEEEEEEeecCCceeeeeecceecc--cCchhHHHHHHHHHHHHcCCCCCCeeEEeecCCCC
Q 041241           67 ILFSILIDESCDIFTKEQMAVVLRYVDKNGYVVEHFIGIEHVT--STTSISLKEALDKLFSRHGLSMSRLHRQGYDEASN  144 (145)
Q Consensus        67 ~~fSi~~DettDis~~~ql~i~vryv~~~~~i~e~fl~~~~~~--~~tae~i~~~i~~~l~~~~l~~~~~~~~~~Dgas~  144 (145)
                      .-.||++|+++|..+..-+.+.|..-  .|   .-||.-++..  ..||+.|++.+.+++++.|  ..|++.+.+|+|++
T Consensus        32 ~Gcsi~~DgWtd~~~~~lInf~v~~~--~g---~~Flksvd~s~~~~~a~~l~~ll~~vIeeVG--~~nVvqVVTDn~~~  104 (153)
T PF04937_consen   32 TGCSIMSDGWTDRKGRSLINFMVYCP--EG---TVFLKSVDASSIIKTAEYLFELLDEVIEEVG--EENVVQVVTDNASN  104 (153)
T ss_pred             cCEEEEEecCcCCCCCeEEEEEEEcc--cc---cEEEEEEecccccccHHHHHHHHHHHHHHhh--hhhhhHHhccCchh
Confidence            45899999999998887777766442  22   4677777776  4799999999999999977  46999999999998


Q ss_pred             C
Q 041241          145 M  145 (145)
Q Consensus       145 M  145 (145)
                      |
T Consensus       105 ~  105 (153)
T PF04937_consen  105 M  105 (153)
T ss_pred             H
Confidence            6

>KOG1121 consensus Tam3-transposase (Ac family) [Replication, recombination and repair]

Probab=96.80  E-value=0.018  Score=49.85  Aligned_cols=74  Identities=14%  Similarity=0.166  Sum_probs=66.3

Q ss_pred             ceeEEEecccccc-cccceeEEEEEEeecCCceeeeeecceecccCchhHHHHHHHHHHHHcCCCCCCeeEEeecC
Q 041241           67 ILFSILIDESCDI-FTKEQMAVVLRYVDKNGYVVEHFIGIEHVTSTTSISLKEALDKLFSRHGLSMSRLHRQGYDE  141 (145)
Q Consensus        67 ~~fSi~~DettDi-s~~~ql~i~vryv~~~~~i~e~fl~~~~~~~~tae~i~~~i~~~l~~~~l~~~~~~~~~~Dg  141 (145)
                      ...++.+|.++|. ....++++..+|+|.+...+..++.+.-...++++.|...+..++.+++|. .++...+.|+
T Consensus       165 ~~v~lT~d~w~~~~~~~~y~~~t~h~id~~~~l~~~il~~~~~~~~~~~~i~~~~~~~~~~~~i~-~kv~~~~~~n  239 (641)
T KOG1121|consen  165 GRVSLTTDLWSDSGTDEGYMVLTAHYIDRDWELHNKILSFCIPPPHLGKALASVLNECLLEWGIE-KKVFSITVDN  239 (641)
T ss_pred             CceEEEEeeecCCCCCcceEEEEEEEeccchHhhhheeeeecCCcchHHHHHHHHHHHHHhhChh-heEEEEeecc
Confidence            7899999999987 567889999999999899999999999556899999999999999999998 6777778877

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	145
2bw3_A	534	Transposase; DNA recombination, transposition; 2.0	99.68

>2bw3_A Transposase; DNA recombination, transposition; 2.0A {Musca domestica} SCOP: a.270.1.1 c.55.3.12 PDB: 2bw3_B

Probab=99.68  E-value=5.8e-17  Score=134.70  Aligned_cols=138  Identities=16%  Similarity=0.220  Sum_probs=111.1

Q ss_pred             ceeccCCChHHHHHHhHhhcCHHHHHHHhhcCCCcccccCc-chHHHHHHHHHHHHHHHHHhhhcc----ceeEEEeccc
Q 041241            2 SLEIQANERIFLSFYFLVDHNEDINAVTFDNAPENLQMTSN-EIKKDIVSCAAVETTNIIIKEMGD----ILFSILIDES   76 (145)
Q Consensus         2 ~~~~~~~gnf~~ll~l~~~~~~~l~~~~l~~~~~~~~y~S~-~~~~~ii~~ia~~i~~~i~~~l~~----~~fSi~~Det   76 (145)
                      .+++.++.+|+++++.+...+|.+.++ +.   .+....|. ++... +..++..+++.++++++.    .+|||++|+|
T Consensus        33 Pf~~ve~~~F~~~l~~l~~~~p~~~~~-~~---~~~~~ps~~~~~~~-i~~~~~~~~~~l~~~l~~~~~~~~~sl~~D~w  107 (534)
T 2bw3_A           33 PFSAVSGSGFIDMIKFFIKVKAEYGEH-VN---VEELLPSPITLSRK-VTSDAKEKKALIGREIKSAVEKDGASATIDLW  107 (534)
T ss_dssp             CGGGGGCHHHHHHHHHHHHHHHHHCSC-BC---HHHHSCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             cchhhCCHHHHHHHHHHHhhhhhhccc-cc---hhhcCCCcccHHHH-HHHHHHHHHHHHHHHHHhhhcCCceEEEEecc
Confidence            467788889999999998888876443 11   00112223 34444 455688888999999886    5999999999


Q ss_pred             ccc-cccceeEEEEEEeecCCceeeeeecceecc--cCchhHHHHHHHHHHHHcCCCCCCeeEEeecCCCCC
Q 041241           77 CDI-FTKEQMAVVLRYVDKNGYVVEHFIGIEHVT--STTSISLKEALDKLFSRHGLSMSRLHRQGYDEASNM  145 (145)
Q Consensus        77 tDi-s~~~ql~i~vryv~~~~~i~e~fl~~~~~~--~~tae~i~~~i~~~l~~~~l~~~~~~~~~~Dgas~M  145 (145)
                      ||. .+.++++|++||++ ++.+++++|++.+++  ++||+.|++.|.++|.++|++..+++++.+|||++|
T Consensus       108 t~~~~~~~~l~i~v~~i~-~~~~~~~~L~~~~~~~~~~t~~~i~~~i~~~l~~~~l~~~~~v~~vtDnasn~  178 (534)
T 2bw3_A          108 TDNYIKRNFLGVTLHYHE-NNELRDLILGLKSLDFERSTAENIYKKLKAIFSQFNVEDLSSIKFVTDRGANV  178 (534)
T ss_dssp             EETTTTEEEEEEEEEEEE-TTEEEEEEEEEEEECGGGCSHHHHHHHHHHHHHTTTCCCCTTCEEEECCCHHH
T ss_pred             cCCCCCcceeEEEEEEee-CCceEEEEEeEeecCCCCCCHHHHHHHHHHHHHHcCCCcccceeEECCCHHHH
Confidence            998 47899999999994 678999999999998  599999999999999999999767888888999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	145
d2bw3a2	447	c.55.3.12 (A:163-609) Transposase Hermes, catalyti	4e-06

>d2bw3a2 c.55.3.12 (A:163-609) Transposase Hermes, catalytic domain {House fly (Musca domestica) [TaxId: 7370]} Length = 447

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Hermes transposase-like
domain: Transposase Hermes, catalytic domain
species: House fly (Musca domestica) [TaxId: 7370]

 Score = 42.7 bits (99), Expect = 4e-06
 Identities = 14/80 (17%), Positives = 36/80 (45%), Gaps = 4/80 (5%)

Query: 69  FSILIDE-SCDIFTKEQMAVVLRYVDKNGYVVEHFIGIEHVT--STTSISLKEALDKLFS 125
            S  ID  + +   +  + V L Y + N  + +  +G++ +    +T+ ++ + L  +FS
Sbjct: 13  ASATIDLWTDNYIKRNFLGVTLHYHE-NNELRDLILGLKSLDFERSTAENIYKKLKAIFS 71

Query: 126 RHGLSMSRLHRQGYDEASNM 145
           +  +      +   D  +N+
Sbjct: 72  QFNVEDLSSIKFVTDRGANV 91

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	145
d2bw3a2	447	Transposase Hermes, catalytic domain {House fly (M	99.6

>d2bw3a2 c.55.3.12 (A:163-609) Transposase Hermes, catalytic domain {House fly (Musca domestica) [TaxId: 7370]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Hermes transposase-like
domain: Transposase Hermes, catalytic domain
species: House fly (Musca domestica) [TaxId: 7370]

Probab=99.60  E-value=7.1e-16  Score=120.81  Aligned_cols=86  Identities=19%  Similarity=0.227  Sum_probs=75.9

Q ss_pred             HHHhhhccceeEEEeccccc-ccccceeEEEEEEeecCCceeeeeecceecc--cCchhHHHHHHHHHHHHcCCCCCCee
Q 041241           59 IIIKEMGDILFSILIDESCD-IFTKEQMAVVLRYVDKNGYVVEHFIGIEHVT--STTSISLKEALDKLFSRHGLSMSRLH  135 (145)
Q Consensus        59 ~i~~~l~~~~fSi~~DettD-is~~~ql~i~vryv~~~~~i~e~fl~~~~~~--~~tae~i~~~i~~~l~~~~l~~~~~~  135 (145)
                      +|++.+.+..+|+.+|+||+ .++..||+|++||++ ++.+++++|++.++.  .+||++|++.|.++|+++||++.+++
T Consensus         3 ~~k~~~~~~~~s~~~D~Wts~~~~~~~l~v~~~yi~-~~~~~~~~L~~~~~~~~~~tg~~i~~~l~~~l~~~~i~~~~~~   81 (447)
T d2bw3a2           3 EIKSAVEKDGASATIDLWTDNYIKRNFLGVTLHYHE-NNELRDLILGLKSLDFERSTAENIYKKLKAIFSQFNVEDLSSI   81 (447)
T ss_dssp             HHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEEEE-TTEEEEEEEEEEEECGGGCSHHHHHHHHHHHHHTTTCCCCTTC
T ss_pred             hHHHHHHcCCEEEEEEeecCCCCCeEEEEEEEEEEE-CCceeEEEEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCcceEE
Confidence            44555556789999999776 667899999999998 578999999999885  58999999999999999999999999


Q ss_pred             EEeecCCCCC
Q 041241          136 RQGYDEASNM  145 (145)
Q Consensus       136 ~~~~Dgas~M  145 (145)
                      |+++|||++|
T Consensus        82 ~~~~D~a~n~   91 (447)
T d2bw3a2          82 KFVTDRGANV   91 (447)
T ss_dssp             EEEECCCHHH
T ss_pred             EEEcCCcHhh
Confidence            9999999876