Citrus Sinensis ID: 041247

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------
Protein Sequence
MDNILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTKNSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIFHVAVLNRLEELFKFIYDAKSIADLMVDSNDGEGEMFDPPLYMDIDNASSYMIVATLIVALVFGAAITVPGGNKEDVGLPFLRHKTSFKVFAVSNVISLVASSVSIVNFLSILAPRYAEEDFLYLLSRKLLFGLATLFIAIAAMMVVFSATRFIVFRDGSIWIANLAIVVSSMPVILFIKQHSNSFMMFDGQPMK
Secondary Structure (PSIPRED)
cccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHccHHHccccccccccHHHHHHHcccHHHHHHHHHccccHHHHccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccccccccccHHcccccccccccccccHHHHHHHHccccHHHHHccccHHHHHHcccccHHHHHHHHcccHHHHHHHHHcccHHHHHHccccccHHHHHHHcccHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccHHHHHHHccccccHHHHHHHcccHHHHHHHHHccccccHcccccccccHHHHHHHcccHHHHHHHHHccccHHHHcccccccHHHHHHHcccHHHHHHHHHcccHHHcccccccHHHHHHHcccHHHHHHHHHcccccccccEEEEEEEEEEEEccccHHHHHHHHHHcHcccccccccccccccHHHHHHccccEEEEEEccccccccccccccccHHHHHHccccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccccccccEccccHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MDNILSGLGWVmtngikeaprvllsngganlsEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGnkdiamvpdmdgtLPIVRAAALEQGQMVLLLHKqtknsltddDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARkdltstnqnrrgTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIFHVAVLNRLEELFKFIYDAKSIADlmvdsndgegemfdpplymdidnaSSYMIVATLIVALVFGAaitvpggnkedvglpflrhktsFKVFAVSNVISLVASSVSIVNFLSILAPRYAEEDFLYLLSRKLLFGLATLFIAIAAMMVVFSATRFIVFRDGSIWIANLAIVVSSMPVILFIKQhsnsfmmfdgqpmk
Flexible Loop (DISEMBL)
MDNILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAalngdwavaKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTKNSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLAtkraeneetalhvlarkdltstnqnrrgTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARPtrlifdaakrgnVLFLLILIREYADLMRKCDENGYTIFHVAVLNRLEELFKFIYDAKSIADLMVDSNDGEGEMFDPPLYMDIDNASSYMIVATLIVALVFGAAITVPGGNKEDVGLPFLRHKTSFKVFAVSNVISLVASSVSIVNFLSILAPRYAEEDFLYLLSRKLLFGLATLFIAIAAMMVVFSATRFIVFRDGSIWIANLAIVVSSMPVILFIKQHSNsfmmfdgqpmk
Low Complexity Region (SEG)
MDNILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTKNSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKEENKQAlelveslwtevvlssesvseISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIFHVAVLNRLEELFKFIYDAKSIADLMVDSNDGEGEMFDPPLYMDIDNASSYMIVATLIVALVFGAAITVPGGNKEDVGLPFLRHKTSFKVFavsnvislvassvsivnFLSILAPRYAEEDFLYLLSRKLLFGLATLFIAIAAMMVVFSATRFIVFRDGSIWIANLAIVVSSMPVILFIKQHSNSFMMFDGQPMK
Disordered region (IsUnstruct)
***ILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTKNSLTDDDCIELLVQLIETGFYVVALQLLRDRPR************LHVLAR*********RRGTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIFHVAVLNRLEELFKFIYDAKSIADLMVDSNDGEGEMFDPPLYMDIDNASSYMIVATLIVALVFGAAITVPGGNKEDVGLPFLRHKTSFKVFAVSNVISLVASSVSIVNFLSILAPRYAEEDFLYLLSRKLLFGLATLFIAIAAMMVVFSATRFIVFRDGSIWIANLAIVVSSMPVILFIKQHSNSF*********
Disordered Region (DISOPRED)
MDNILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTKNSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIFHVAVLNRLEELFKFIYDAKSIADLMVDSNDGEGEMFDPPLYMDIDNASSYMIVATLIVALVFGAAITVPGGNKEDVGLPFLRHKTSFKVFAVSNVISLVASSVSIVNFLSILAPRYAEEDFLYLLSRKLLFGLATLFIAIAAMMVVFSATRFIVFRDGSIWIANLAIVVSSMPVILFIKQHSNSFMMFDGQPMK
Disordered Region (DISEMBL)
MDNILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTKNSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIFHVAVLNRLEELFKFIYDAKSIADLMVDSNDGEGEMFDPPLYMDIDNASSYMIVATLIVALVFGAAITVPGGNKEDVGLPFLRHKTSFKVFAVSNVISLVASSVSIVNFLSILAPRYAEEDFLYLLSRKLLFGLATLFIAIAAMMVVFSATRFIVFRDGSIWIANLAIVVSSMPVILFIKQHSNSFMMFDGQPMK
Disordered Region (DISPRO)
MDNILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTKNSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIFHVAVLNRLEELFKFIYDAKSIADLMVDSNDGEGEMFDPPLYMDIDNASSYMIVATLIVALVFGAAITVPGGNKEDVGLPFLRHKTSFKVFAVSNVISLVASSVSIVNFLSILAPRYAEEDFLYLLSRKLLFGLATLFIAIAAMMVVFSATRFIVFRDGSIWIANLAIVVSSMPVILFIKQHSNSFMMFDGQPMK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDNILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTKNSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIFHVAVLNRLEELFKFIYDAKSIADLMVDSNDGEGEMFDPPLYMDIDNASSYMIVATLIVALVFGAAITVPGGNKEDVGLPFLRHKTSFKVFAVSNVISLVASSVSIVNFLSILAPRYAEEDFLYLLSRKLLFGLATLFIAIAAMMVVFSATRFIVFRDGSIWIANLAIVVSSMPVILFIKQHSNSFMMFDGQPMK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	507	2.2.26 [Sep-21-2011]
Q9C7A2	590	Ankyrin repeat-containing	no	no	0.812	0.698	0.243	4e-14
Q502K3	1071	Serine/threonine-protein	yes	no	0.497	0.235	0.249	9e-08
Q71S22	1007	Inversin-A OS=Xenopus lae	N/A	no	0.214	0.108	0.352	3e-05
Q5ZLC8	1073	Serine/threonine-protein	no	no	0.548	0.259	0.251	3e-05
Q71S21	1002	Inversin-B OS=Xenopus lae	N/A	no	0.230	0.116	0.347	3e-05
Q8C8R3	3898	Ankyrin-2 OS=Mus musculus	yes	no	0.514	0.066	0.251	4e-05
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.609	0.589	0.223	4e-05
Q01484	3957	Ankyrin-2 OS=Homo sapiens	yes	no	0.280	0.035	0.307	6e-05
Q5ZIJ9	954	E3 ubiquitin-protein liga	no	no	0.278	0.147	0.280	0.0006
A6QR20	1055	Ankyrin repeat domain-con	no	no	0.313	0.150	0.268	0.0008

>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1

 Score = 80.1 bits (196), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 132/542 (24%), Positives = 214/542 (39%), Gaps = 130/542 (23%)

Query: 19  APRVLLSNGGANLSEDSLRR-----------LKLYRAALNGDWAVAKDIY---------- 57
           AP ++LSN G  + +   ++            +L+ AA  GD A  + I           
Sbjct: 45  APALVLSNSGKRMDQAGKKKYVKQVTGRHNDTELHLAAQRGDLAAVQQILKDINSQMEGI 104

Query: 58  ---DKYKVEIGQ-------EITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIG 107
              +++  E+ +       E+  LG TAL  AA    +D VKELLK  S E +AKKN+ G
Sbjct: 105 LSGEEFDAEVAEIRASIVNEVNELGETALFTAADKGHLDVVKELLKYSSRESIAKKNRSG 164

Query: 108 CTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTKNS 167
                 AA  G   IVE ++  +  ++         P+V AA     ++V  L  +  N 
Sbjct: 165 YDPLHIAAIQGHHAIVEVLLDHDATLSQTFGPSNATPLVSAAMRGHTEVVNQLLSKAGNL 224

Query: 168 L-----TDDDCIELLVQLIETGFYVVALQLLRDRPRLATK-------------RAENEE- 208
           L      + + + L  +    G   V   LL   P+LA +             + ++ E 
Sbjct: 225 LEISRSNNKNALHLAAR---QGHVEVIKALLSKDPQLARRIDKKGQTALHMAVKGQSSEV 281

Query: 209 --------------------TALHVLARKDLTSTNQNRRGTFFQRCF-----NLGAEKEE 243
                               TALHV  RK        +R    +        N      +
Sbjct: 282 VKLLLDADPAIVMQPDKSCNTALHVATRK--------KRAEIVELLLSLPDTNANTLTRD 333

Query: 244 NKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMR 303
           +K AL++ E L     LS ES S I + +AR        A R N L       +  D +R
Sbjct: 334 HKTALDIAEGL----PLSEES-SYIKECLAR------SGALRANEL------NQPRDELR 376

Query: 304 KCDENGYTIFHVAVLNRLEELFKFIYD-AKSIADLMVDSNDGEGEMFDPPLYMDIDNAS- 361
                     H+  L + +   K +++ +K +  L  +                I+NA+ 
Sbjct: 377 STVTQIKNDVHIQ-LEQTKRTNKNVHNISKELRKLHREG---------------INNATN 420

Query: 362 SYMIVATLIVALVFGAAITVPGGNKEDVGLPFLRHKTSFKVFAVSNVISLVAS-SVSIVN 420
           S  +VA L   + F A  TVPGG+  D G   +  + SFK+F + N ++L  S +V +V 
Sbjct: 421 SVTVVAVLFATVAFAAIFTVPGGDNND-GSAVVVGRASFKIFFIFNALALFTSLAVVVVQ 479

Query: 421 FLSILAPRYAEEDFLYLLSRKLLFGLATLFIAIAAMMVVFSATRFIVFRDGSIWIANLAI 480
              +     AE+  + ++++  L  LA++  ++A     F A+ +IV    + W A L  
Sbjct: 480 ITLVRGETKAEKRVVEVINK--LMWLASMCTSVA-----FLASSYIVVGRKNEWAAELVT 532

Query: 481 VV 482
           VV
Sbjct: 533 VV 534

Arabidopsis thaliana (taxid: 3702)

>sp|Q502K3|ANR52_DANRE Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C OS=Danio rerio GN=ankrd52 PE=2 SV=1

 Score = 58.9 bits (141), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 118/289 (40%), Gaps = 37/289 (12%)

Query: 70  NLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKG 129
           N G T LH AA    I+ +  LL   S  D+ KK+K G T   YAAA+G  + V  ++  
Sbjct: 421 NFGRTCLHAAASGGNIECLNLLLS--SGADMNKKDKFGRTPLHYAAANGRYQCVVVLVGA 478

Query: 130 NKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTKNSLTDDD-----CIELLVQLIETG 184
             ++    D  G  P+  +AA          H  T  +  D +     C+E    L++ G
Sbjct: 479 GAEVNER-DRSGCTPLHYSAASTAFCRTDRPHASTHQNQEDGEKESFLCVE---HLLDNG 534

Query: 185 FYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKEEN 244
                       P L   +     +A+H  A       N+       + CFN   +KE N
Sbjct: 535 A----------DPCLCNTKG---YSAVHYAA----AHGNKQNLELLLEMCFNTLGDKESN 577

Query: 245 KQALEL---VESLWTEVV---LSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREY 298
                L   VES   E V   + S    ++   + R   +++ A++RG+   + +L+ + 
Sbjct: 578 GSISPLHLAVESGHWECVTVLIESGVCVDVCDPVGR--SVLYLASQRGHSRCVELLLSQS 635

Query: 299 ADLMRKCDENGYTIFHVAVLNRLEELFKFIYDAKSIADLMVDSNDGEGE 347
           A  +     + +   HVA  N   E  + +  ++  ADL V+  D EG+
Sbjct: 636 ASCLLAEHRSKWGPLHVAAANGHSECLRMLLCSEGGADL-VNVTDAEGQ 683

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Danio rerio (taxid: 7955)

>sp|Q71S22|INVSA_XENLA Inversin-A OS=Xenopus laevis GN=invs-a PE=1 SV=1

 Score = 50.8 bits (120), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 61/119 (51%), Gaps = 10/119 (8%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAK---DIYDKYKVEIGQEIT 69
           +G +E  R+L S  G N++  D+L R  L+ AAL G   +A    +  +   +    +  
Sbjct: 227 DGNQEVVRLLTSYRGCNVAPYDNLFRTPLHWAALLGYTPIAHLLLETNNSPNIPSDSQ-- 284

Query: 70  NLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMK 128
             G T LH AAQ NC D V+ LL  +S  D A  +  G TAF +AA  G  E+V  M++
Sbjct: 285 --GATPLHYAAQGNCPDTVRVLLSHISVRDEA--DLEGRTAFMWAAGKGSDEVVRTMLE 339

Required for normal renal development and establishment of left-right axis. Probably acts as a molecular switch between different Wnt signaling pathways. Inhibits the canonical Wnt pathway by targeting cytoplasmic disheveled for degradation by the ubiquitin-proteasome. This suggests that it is required in renal development to oppose the repression of terminal differentiation of tubular epithelial cells by Wnt signaling (By similarity). Plays a central role in convergent extension movements in gastrulating embryos, a processus regulated by Wnt signaling.

Xenopus laevis (taxid: 8355)

>sp|Q5ZLC8|ANR52_CHICK Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C OS=Gallus gallus GN=ANKRD52 PE=2 SV=1

 Score = 50.8 bits (120), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 129/326 (39%), Gaps = 48/326 (14%)

Query: 50  WAVAKDIYDKYKVEIGQEIT---NLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKI 106
           +++   + +++ +  G +I    NLG T LH AA    ++ +  LL   S  DL +++K 
Sbjct: 398 YSIVSSLSNEHVLSAGFDINTPDNLGRTCLHAAASGGNVECLNLLLS--SGADLRRRDKF 455

Query: 107 GCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTKN 166
           G T   YAAA+G  +    ++     I    D  G  P+  AAA +  +        + N
Sbjct: 456 GRTPLHYAAANGSYQCTVTLVTAGASINEA-DCKGCTPLHYAAASDTYRRA---ETHSGN 511

Query: 167 SLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLAR---------- 216
           S  D D   L    ++  F+   L+ L D     + R +   TA+H  A           
Sbjct: 512 S-HDTDEEPLKESRMKEAFFC--LEFLLDNGADPSLRDKQGYTAVHYAAAYGNRQNLELL 568

Query: 217 --------KDLTST-----------NQNRRG--TFFQRCFNLGAEKEENKQALEL-VESL 254
                   +D+ ST           N +     T  +   NL     + + AL L  E  
Sbjct: 569 LEMSFNCLEDVESTIPVSPLHLAAYNGHCEALKTLAETLVNLDVRDHKGRTALYLATERG 628

Query: 255 WTEV--VLSSESVSEISKLIARPTRLIFDAAKRGNV--LFLLILIREYADLMRKCDENGY 310
            TE   VL+S   S + K   R    +  AA  GN   L LLI   E AD+    D +G 
Sbjct: 629 STECVEVLTSHGASALVKERKRKWTPLHAAAANGNTDSLHLLIDSGERADITDVMDIHGQ 688

Query: 311 TIFHVAVLNRLEELFKFIYDAKSIAD 336
           T   +A++N   +    + +  S AD
Sbjct: 689 TPLMLAIMNGHVDCVHLLLEKGSTAD 714

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Gallus gallus (taxid: 9031)

>sp|Q71S21|INVSB_XENLA Inversin-B OS=Xenopus laevis GN=invs-b PE=1 SV=1

 Score = 50.4 bits (119), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 61/121 (50%), Gaps = 4/121 (3%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLG 72
           +G +E  R+L S  G N++  D+L R  L+ AAL G   +A  + ++          + G
Sbjct: 227 DGNQEVVRLLTSYRGCNVAPYDNLFRTPLHWAALLGHTPIAHLLLERNNSP-NIPSDSQG 285

Query: 73  NTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKD 132
            T LH AAQ NC D V+ LL   S  D A  +  G TA  +AA  G  E+V  M++ N  
Sbjct: 286 ATPLHYAAQGNCPDTVRVLLSHPSVRDEA--DLEGRTALMWAAGKGSDEVVRTMLELNPK 343

Query: 133 I 133
           +
Sbjct: 344 L 344

Required for normal renal development and establishment of left-right axis. Probably acts as a molecular switch between different Wnt signaling pathways. Inhibits the canonical Wnt pathway by targeting cytoplasmic disheveled for degradation by the ubiquitin-proteasome. This suggests that it is required in renal development to oppose the repression of terminal differentiation of tubular epithelial cells by Wnt signaling. Plays a central role in convergent extension movements in gastrulating embryos, a processus regulated by Wnt signaling.

Xenopus laevis (taxid: 8355)

>sp|Q8C8R3|ANK2_MOUSE Ankyrin-2 OS=Mus musculus GN=Ank2 PE=1 SV=2

 Score = 50.4 bits (119), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 75/298 (25%), Positives = 130/298 (43%), Gaps = 37/298 (12%)

Query: 72  GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNK 131
           G  ALH+AA+   +  V+ELL   S+ D A K   G TA   A+ +G  E+V+ ++K   
Sbjct: 64  GLNALHLAAKEGHVGLVQELLGRGSSVDSATKK--GNTALHIASLAGQAEVVKVLVKEGA 121

Query: 132 DIAMVPDMDGTLPIVRAAALEQGQMV--LLLHKQTKNSLTDDDCIELLVQLIETGFYVVA 189
           +I      +G  P+  AA      +V  LL +   +++ T+D    L V L +     VA
Sbjct: 122 NIN-AQSQNGFTPLYMAAQENHIDVVKYLLENGANQSTATEDGFTPLAVALQQGHNQAVA 180

Query: 190 LQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKEENKQALE 249
           + L  D       + +    ALH+ ARKD T +         Q   N  A+ +       
Sbjct: 181 ILLEND------TKGKVRLPALHIAARKDDTKS----AALLLQNDHN--ADVQSKMMVNR 228

Query: 250 LVESLWTEVVLSSE--SVSEISKLIARPTRLIFD----------AAKRGNVLFLLILIRE 297
             ES +T + +++   +V+  + L+ R   + F           A+KRGN   + +L+  
Sbjct: 229 TTESGFTPLHIAAHYGNVNVATLLLNRGAAVDFTARNGITPLHVASKRGNTNMVKLLLDR 288

Query: 298 YADLMRKCDENGYTIFHVAVLNRLEELFKFIYDAKSIADLMVDSNDGEGEMFDPPLYM 355
              +  K   +G T  H A  +  +++ + + + K  A L+  + +G       PL+M
Sbjct: 289 GGQIDAKT-RDGLTPLHCAARSGHDQVVELLLERK--APLLARTKNGLS-----PLHM 338

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes (By similarity). Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Mus musculus (taxid: 10090)

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score = 50.1 bits (118), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 78/349 (22%), Positives = 144/349 (41%), Gaps = 40/349 (11%)

Query: 63  EIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEI 122
           E+  E    G TAL+VAA+    D VK L+K   +     K K G  AF  AA +G +++
Sbjct: 47  ELLAEQNQSGETALYVAAEYGYTDMVKILMKHSDSVLAGTKAKNGFDAFHIAAKNGNLQV 106

Query: 123 VEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTKN--SLTDDDCIELLVQL 180
           ++ +++ N +++   D   T  +  AA+   G++V  L  +  +  ++   +    L   
Sbjct: 107 LDVLIEANPELSFTFDSSKTTALHTAASQGHGEIVCFLLDKGVDLAAIARSNGKTALHSA 166

Query: 181 IETGFYVVALQLLRDRPRLATKRAENEETALHVLAR---KDLTSTNQNRRGTFFQRCFNL 237
              G  V+  +L+  +  + T+  +  +TALH+  +    ++        G+      N 
Sbjct: 167 ARNGHTVIVKKLIEKKAGMVTRVDKKGQTALHMAVKGQNTEIVDVLMEADGSLINSADNK 226

Query: 238 GAEKEENKQALELVESLWTEVVLSSESVSEISKL-IARPTRLIFDAAKRGNVLFLLILIR 296
           G     N      V     E+V +     E+S++ + +      D A++  +  ++ L++
Sbjct: 227 G-----NTPLHIAVRKNRAEIVQTVLKYCEVSRVAVNKSGETALDIAEKTGLHEIVPLLQ 281

Query: 297 ----------------EYADLMRKCDENGYTIFHVAVLNRLEELFKFIYDAKSIADLMVD 340
                           E +   RK  E    I H  V  +LE+  +   + + IA   V+
Sbjct: 282 KIGMQNARSIKPAEKVEPSGSSRKLKETVSEIGH-EVHTQLEQTGRTRREIQGIAK-RVN 339

Query: 341 SNDGEGEMFDPPLYMDIDNA-SSYMIVATLIVALVFGAAITVPGGNKED 388
               EG          ++NA +S  +VA LI  + F A   VPG   +D
Sbjct: 340 KMHTEG----------LNNAINSTTLVAILIATVAFAAIFNVPGQYTDD 378

Arabidopsis thaliana (taxid: 3702)

>sp|Q01484|ANK2_HUMAN Ankyrin-2 OS=Homo sapiens GN=ANK2 PE=1 SV=4

 Score = 49.7 bits (117), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 47/153 (30%), Positives = 73/153 (47%), Gaps = 11/153 (7%)

Query: 72  GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNK 131
           G  ALH+AA+   +  V+ELL   S+ D A K   G TA   A+ +G  E+V+ ++K   
Sbjct: 64  GLNALHLAAKEGHVGLVQELLGRGSSVDSATKK--GNTALHIASLAGQAEVVKVLVKEGA 121

Query: 132 DIAMVPDMDGTLPIVRAAALEQGQMV--LLLHKQTKNSLTDDDCIELLVQLIETGFYVVA 189
           +I      +G  P+  AA      +V  LL +   +++ T+D    L V L +     VA
Sbjct: 122 NIN-AQSQNGFTPLYMAAQENHIDVVKYLLENGANQSTATEDGFTPLAVALQQGHNQAVA 180

Query: 190 LQLLRDRPRLATKRAENEETALHVLARKDLTST 222
           + L  D       + +    ALH+ ARKD T +
Sbjct: 181 ILLEND------TKGKVRLPALHIAARKDDTKS 207

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes. Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Homo sapiens (taxid: 9606)

>sp|Q5ZIJ9|MIB2_CHICK E3 ubiquitin-protein ligase MIB2 OS=Gallus gallus GN=MIB2 PE=2 SV=1

 Score = 46.2 bits (108), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 5/146 (3%)

Query: 72  GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNK 131
           G+TALH AA  N  D  + L+   +  DL   N   CTA + A + G  E+V+ + + N 
Sbjct: 498 GDTALHYAAFGNQADVARVLMAKGAGADLL--NNAKCTALYVAVSQGFTEVVQALCELNC 555

Query: 132 DIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTKNSLTDDDC--IELLVQLIETGFYVVA 189
           D+ + PD  G  P+  A   +   ++ +L +      T  +C    LL      G  +  
Sbjct: 556 DVNL-PDSHGDTPLHYAITADYKVIIEILTEVPNIDFTVQNCQGFNLLHYSALKGNKLAI 614

Query: 190 LQLLRDRPRLATKRAENEETALHVLA 215
            ++L    +L   + E+  TALH+ A
Sbjct: 615 KKILARARQLVDSKKEDGFTALHLAA 640

E3 ubiquitin-protein ligase that mediates ubiquitination of Delta receptors, which act as ligands of Notch proteins. Positively regulates the Delta-mediated Notch signaling by ubiquitinating the intracellular domain of Delta, leading to endocytosis of Delta receptors.

Gallus gallus (taxid: 9031)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|A6QR20|ANR32_BOVIN Ankyrin repeat domain-containing protein 32 OS=Bos taurus GN=ANKRD32 PE=2 SV=2

 Score = 45.8 bits (107), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 78/179 (43%), Gaps = 20/179 (11%)

Query: 4   ILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVE 63
           +L+G       G+ E P + L+   +     SL+RLK       G+ + +K+       +
Sbjct: 744 MLNGAKQKQGEGLPEIPELNLAKCSS-----SLKRLK---KKSEGELSCSKENCPSLVTK 795

Query: 64  IGQEITNL-GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEI 122
           I    TNL G TALH A   N +D +  LL M    D+  K+  G T    A   G    
Sbjct: 796 INFHKTNLKGETALHRACINNQVDRLILLLSMPGI-DINVKDNAGWTPLHEACNYGNTVC 854

Query: 123 VEEMMKGNKDIAMVPDMDGTLPIVRAAA----------LEQGQMVLLLHKQTKNSLTDD 171
           V+E+++   ++ ++  +DG  P+  A +          L+ G  VLL  + +K  L  D
Sbjct: 855 VQEILQRCPEVDLLTQVDGVTPLHDALSNGHVEIGKLLLQHGGPVLLQQRNSKGELPLD 913

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	507
359483665	762	PREDICTED: ankyrin repeat-containing pro	0.879	0.585	0.368	2e-80
359472754	789	PREDICTED: ankyrin repeat-containing pro	0.877	0.564	0.377	2e-78
224120488	610	predicted protein [Populus trichocarpa]	0.895	0.744	0.367	7e-75
297740805	702	unnamed protein product [Vitis vinifera]	0.785	0.566	0.342	2e-67
356532648	739	PREDICTED: uncharacterized protein LOC10	0.885	0.607	0.348	8e-67
449473453	702	PREDICTED: ankyrin repeat-containing pro	0.883	0.638	0.327	2e-64
225425076	563	PREDICTED: ankyrin repeat-containing pro	0.854	0.769	0.364	6e-64
449454911	650	PREDICTED: ankyrin repeat-containing pro	0.891	0.695	0.335	9e-64
359473665	602	PREDICTED: LOW QUALITY PROTEIN: ankyrin	0.885	0.745	0.348	1e-62
147860696	891	hypothetical protein VITISV_011174 [Viti	0.877	0.499	0.332	8e-61

>gi|359483665|ref|XP_003632996.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 195/529 (36%), Positives = 285/529 (53%), Gaps = 83/529 (15%)

Query: 41  LYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDL 100
           LY AAL+GDW VA+ I++     +   IT    T LH+AA A  + FV+ L++MM+  DL
Sbjct: 208 LYLAALSGDWDVAERIFESDHQAVRARITRAQETPLHIAAGARHLTFVENLVRMMTPADL 267

Query: 101 AKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLL 160
           A +NK+G TA  +AA SG+ +I E M+  N  + ++   +G  P+  A  L   +MV  L
Sbjct: 268 ALRNKVGNTALCFAAVSGVTKIAEVMVNKNNRLPLIRGSEGATPLHMATLLGHREMVWYL 327

Query: 161 HKQT-------KNSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHV 213
           + +T        N LTD+D   LL+  I +  + VAL++++  P++AT R  N ETALH+
Sbjct: 328 YNKTDSNRLTDSNRLTDEDHHGLLIAAITSDLFDVALKIVQKHPKIATARGRNGETALHI 387

Query: 214 LARKDLTSTNQNRRGTFFQRCFN-------LGAEKEENKQALELVESLWTEVVLSSESVS 266
           LARK     + ++ G F QRC         +  +K  + QALELV+ LW+EV+L +E   
Sbjct: 388 LARKPSAYQSGSQLG-FLQRCIYAFPFIKVVYDQKLMHIQALELVKCLWSEVLLMNE--L 444

Query: 267 EISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIFHVAVLNRLEELFK 326
           ++ +LI  P+RL+F AA+ G V FL+ LI  Y DL+ K D    +IFH+AV++R E++F 
Sbjct: 445 QVGELIRTPSRLLFTAAELGIVEFLIELIHAYPDLIWKVDTQSRSIFHIAVVHRQEKVFN 504

Query: 327 FIYDAKSIADLMVDSND------------------------------------GEGEMFD 350
            I++  ++ DL+    D                                     E E   
Sbjct: 505 LIHEIGALKDLIASYRDENNNNMLHLAGKLAPSDRLKTDSGAALQLRRELHWFKEVEKIV 564

Query: 351 PPLYMDI----------------------------DNASSYMIVATLIVALVFGAAITVP 382
            PLY +I                            D A+S M+VATLI  ++F A  TVP
Sbjct: 565 QPLYREIRNSEGKTPQTLFMEEHKVLVREGEKWMKDTAASCMLVATLIATVMFAAFFTVP 624

Query: 383 GGNKEDVGLPFLRHKTSFKVFAVSNVISLVASSVSIVNFLSILAPRYAEEDFLYLLSRKL 442
           GG+  + G+P    + SF VFAVS+ +S V+S+ SI+ FLSIL  RYAEEDFL+ L  +L
Sbjct: 625 GGDNGNTGIPIFLKRRSFTVFAVSDALSFVSSAASILMFLSILTSRYAEEDFLHSLPNRL 684

Query: 443 LFGLATLFIAIAAMMVVFSATRFIVFRDGSIWIANLAI-VVSSMPVILF 490
             GL TLFI++A MM+ F AT F+V   G +  A + I +V+ +PV LF
Sbjct: 685 TIGLGTLFISVATMMIAFCATLFLVLGHG-LHQAKIPIALVACIPVSLF 732

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359472754|ref|XP_002276402.2| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 196/519 (37%), Positives = 276/519 (53%), Gaps = 74/519 (14%)

Query: 44  AALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKK 103
           AALNGDW  AK   +     +   IT    TALH+AA A    FV+EL+K+M  +DLA +
Sbjct: 181 AALNGDWKSAKAFLESNPQAVRARITRRSETALHIAAGARHTRFVEELVKLMKPDDLALQ 240

Query: 104 NKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQ 163
           NK+G TA  +AAASG+  I E M+  N+++ M+    G  P+  AA +    MV  L+  
Sbjct: 241 NKVGNTALCFAAASGITRIAEVMVNKNRELPMIRGSKGVTPLYMAALVGHKDMVRYLYSV 300

Query: 164 T-KNSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTST 222
           T +++LT +D I LLV  I    + VAL +L + P LA  R  N +TALHVLARK L   
Sbjct: 301 TEEDNLTKEDRIGLLVAAITANLFDVALHMLHEDPELAMARDGNGDTALHVLARKPLAFY 360

Query: 223 NQNRRGTFFQRCF-------NLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARP 275
           + ++ G  + RC        ++  +K  + QALELV+ LW + +LS +   +I +LI  P
Sbjct: 361 SGSQLG-IWHRCIYSFPGFKSVYDKKLMHIQALELVQQLWDK-ILSLDHDPKIGELIRTP 418

Query: 276 TRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIFHVAVLNRLEELFKFIYDAKSIA 335
           +RL+F AA+ G V F+ +LIR Y DL+ K ++   TIFHVAV +R E++F  IY+  +  
Sbjct: 419 SRLLFTAAELGIVEFITVLIRSYPDLIWKVNDQSQTIFHVAVAHRQEKIFNLIYEIGAHK 478

Query: 336 D-------------------------LMVDSNDG-----------EGEMFDPPLYMDIDN 359
           D                         L +DS              E E    P Y ++ N
Sbjct: 479 DYIAAYKDEKNNNMLHLAGKLAPSNRLKIDSGAAFQLQRELHWFKEVEKIIQPSYTEMKN 538

Query: 360 ---------------------------ASSYMIVATLIVALV-FGAAITVPGGNKEDVGL 391
                                       +S  +V   ++A V F AA +VPGGN +D G 
Sbjct: 539 EQGRTPQILFTEEHKDLVREGEKWMKDTASSCMVVATLIATVMFAAAFSVPGGNDDDTGR 598

Query: 392 PFLRHKTSFKVFAVSNVISLVASSVSIVNFLSILAPRYAEEDFLYLLSRKLLFGLATLFI 451
           P    K SF VFA+S+ ++L +S+ SI+ FLSIL  RYAEEDFL  L  +L+ GLATLFI
Sbjct: 599 PIFLTKKSFLVFAISDALALFSSATSILIFLSILTSRYAEEDFLESLPNRLIIGLATLFI 658

Query: 452 AIAAMMVVFSATRFIVFRDGSIWIANLAIVVSSMPVILF 490
           ++A MM+ F AT FIV     +W+AN   +V+ +PV LF
Sbjct: 659 SVATMMIAFCATLFIVLGPELVWVANPMALVACVPVTLF 697

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120488|ref|XP_002331060.1| predicted protein [Populus trichocarpa] gi|222872990|gb|EEF10121.1| predicted protein [Populus trichocarpa]

 Score =  287 bits (735), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 199/542 (36%), Positives = 281/542 (51%), Gaps = 88/542 (16%)

Query: 37  RRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMS 96
           R L+LY+AAL+GDW  A+ IY     E+   IT  G TALH+AA A    FVK+L+ MMS
Sbjct: 48  RHLQLYQAALSGDWDTAEGIYKLCPGEVNARITKRGETALHIAAAAEHTHFVKQLVGMMS 107

Query: 97  TEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQM 156
            E LA ++  G TAF +AA SG+  + + MM    D+AM       LPI  A  L    M
Sbjct: 108 IEALAYRSSAGNTAFCFAAISGVEALAKVMMDKKPDLAMTRGRGNLLPIYMATLLGHRGM 167

Query: 157 VLLLHKQTKNSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLAR 216
           V  L+ +TK  LTD D I+LLV LI +  Y VA ++L++   LA  R E++ TALH  ++
Sbjct: 168 VSYLYDETKEQLTDGDRIKLLVALINSDIYDVAWKMLKEHRGLAYARDEHQLTALHAFSQ 227

Query: 217 KDLTSTN---QNRRGTFFQRCFN-----LGAEKEENKQALELVESLWTEVVLSSESVSEI 268
           K    +N   Q+  G F+ +C N        +K  +KQAL+L++ LW +VVL  +S   I
Sbjct: 228 KSCMPSNVVDQSPPG-FWNKCLNPCFKLAQMKKLMHKQALDLIQYLWEQVVLLDDST--I 284

Query: 269 SKLIARPTRLIFDAAKRGNV-----------------------LFLLILIREYADLMRKC 305
           S  I +P  LIF AA+RGN+                       +F + ++  + D+++  
Sbjct: 285 SSQIGKPWPLIFTAAERGNLDLLTILIRLYPELIFKVDQNTYSIFHIAILNRHEDILKMI 344

Query: 306 --------------DENGYTIFHVAV------------------LNR----LEELFKFI- 328
                         D  G  + H+A                   L R     EE+ K + 
Sbjct: 345 YQIGSIKNVMTIYKDREGNNMLHLAAKVLESPSRLNAIPGAALQLQRELLWFEEVKKVVQ 404

Query: 329 --------YDAKSIADLMVDSND---GEGEMFDPPLYMDIDNASSYMIVATLIVALVFGA 377
                   +  K+   L ++ +     EGE      +M  D A S M+VATLI  +VF A
Sbjct: 405 PRHIEEKNFHGKTPGALFIEQHRDLMKEGEQ-----WMR-DTADSCMLVATLIATVVFAA 458

Query: 378 AITVPGGNKEDVGLPFLRHKTSFKVFAVSNVISLVASSVSIVNFLSILAPRYAEEDFLYL 437
           A TVPGGN +D G P    + +FK FA+S+ ISLV S+ S++ FLS    RYAE++FL+ 
Sbjct: 459 AFTVPGGNFQDKGTPVFLKEIAFKFFAISDAISLVTSASSLLTFLSTRTSRYAEQNFLWS 518

Query: 438 LSRKLLFGLATLFIAIAAMMVVFSATRFIVFRDGSIWIANLAIVVSSMPVILFIKQHSNS 497
           L  +L+ GL TLFI+I AMMV F AT F+VF +  +  +    VV+S+PVI FI QH   
Sbjct: 519 LPNRLIIGLTTLFISIGAMMVAFMATFFLVFGNKLLPYSIPIAVVASLPVIFFIWQHFRL 578

Query: 498 FM 499
           F+
Sbjct: 579 FV 580

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740805|emb|CBI30987.3| unnamed protein product [Vitis vinifera]

 Score =  263 bits (672), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 184/537 (34%), Positives = 261/537 (48%), Gaps = 139/537 (25%)

Query: 41  LYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDL 100
           LY AAL+GDW VA+ I++     +   IT    T LH+AA A  + FV+ L++MM+  DL
Sbjct: 165 LYLAALSGDWDVAERIFESDHQAVRARITRAQETPLHIAAGARHLTFVENLVRMMTPADL 224

Query: 101 AKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLL 160
           A +NK+G TA  +AA SG+ +I E M+  N            LP++R             
Sbjct: 225 ALRNKVGNTALCFAAVSGVTKIAEVMVNKNNR----------LPLIRGN----------- 263

Query: 161 HKQTKNSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLT 220
                                      VAL++++  P++AT R  N ETALH+LARK   
Sbjct: 264 ---------------------------VALKIVQKHPKIATARGRNGETALHILARKPSA 296

Query: 221 STNQNRRGTFFQRCF--NLGAEKEENK--------------------QALELVESLWTEV 258
             + ++ G F QRC    L  E   N                     QALELV+ LW+EV
Sbjct: 297 YQSGSQLG-FLQRCIYACLHVELSGNSSVIHKVPFIKVVYDQKLMHIQALELVKCLWSEV 355

Query: 259 VLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIFHVAVL 318
           +L +E   ++ +LI  P+RL+F AA+ G V FL+ LI  Y DL+ K D    +IFH+AV+
Sbjct: 356 LLMNEL--QVGELIRTPSRLLFTAAELGIVEFLIELIHAYPDLIWKVDTQSRSIFHIAVV 413

Query: 319 NRLEELFKFIYDAKSIADLMVDSND----------------------------------- 343
           +R E++F  I++  ++ DL+    D                                   
Sbjct: 414 HRQEKVFNLIHEIGALKDLIASYRDENNNNMLHLAGKLAPSDRLKTDSGAALQLRRELHW 473

Query: 344 -GEGEMFDPPLYMDI----------------------------DNASSYMIVATLIVALV 374
             E E    PLY +I                            D A+S M+VATLI  ++
Sbjct: 474 FKEVEKIVQPLYREIRNSEGKTPQTLFMEEHKVLVREGEKWMKDTAASCMLVATLIATVM 533

Query: 375 FGAAITVPGGNKEDVGLPFLRHKTSFKVFAVSNVISLVASSVSIVNFLSILAPRYAEEDF 434
           F A  TVPGG+  + G+P    + SF VFAVS+ +S V+S+ SI+ FLSIL  RYAEEDF
Sbjct: 534 FAAFFTVPGGDNGNTGIPIFLKRRSFTVFAVSDALSFVSSAASILMFLSILTSRYAEEDF 593

Query: 435 LYLLSRKLLFGLATLFIAIAAMMVVFSATRFIVFRDGSIWIANLAI-VVSSMPVILF 490
           L+ L  +L  GL TLFI++A MM+ F AT F+V   G +  A + I +V+ +PV LF
Sbjct: 594 LHSLPNRLTIGLGTLFISVATMMIAFCATLFLVLGHG-LHQAKIPIALVACIPVSLF 649

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532648|ref|XP_003534883.1| PREDICTED: uncharacterized protein LOC100814269 [Glycine max]

 Score =  261 bits (666), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 183/525 (34%), Positives = 269/525 (51%), Gaps = 76/525 (14%)

Query: 39  LKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTE 98
           L LYRA+L GDW  A +  + +       I+    TALH++A A    FV+EL+K M T 
Sbjct: 195 LPLYRASLKGDWEKANEFLNLHPGAENAMISRGWETALHISAGARRTKFVEELVKRMRTT 254

Query: 99  DLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVL 158
           DL  +NK   TA  +AAASG+ +I + M+  N+++ ++   +G  P+  A  L Q  MV 
Sbjct: 255 DLEIQNKDNNTALCFAAASGVTKIAKLMVDRNRNLPVIRGSEGVTPLYIATLLGQRDMVW 314

Query: 159 LLHKQTKNS-LTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARK 217
            L+  T +  L  +D   LL+  I T  Y  AL +L  +P+LAT    N ETALHVLA+K
Sbjct: 315 YLYSVTNHEILKTEDYFSLLIAAISTDLYDFALHVLECQPQLATYHGLNGETALHVLAKK 374

Query: 218 DLTSTNQNRRGTFFQRCF-------NLGAEKEENKQALELVESLWTEVVLSSESVSEISK 270
             + T+  + G  ++RC         +  +K  N QAL+LV+ LW E+++SS+ +     
Sbjct: 375 PSSFTSGIQLG-IWERCIYPLPGFEAVQKKKTLNAQALKLVQRLW-ELIVSSDEIQH-GD 431

Query: 271 LIARP-TRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIFHVAVLNRLEELFKFIY 329
           LI  P +R +F AA+ G    ++ L+  Y DL+ K D    ++FH+A+++R E++F  IY
Sbjct: 432 LIKSPLSRPLFIAAESGIPEIVIELLYSYPDLLWKVDGQNRSLFHIAIMHRQEKIFNLIY 491

Query: 330 DAKSIADLMVDSNDG------------------------------------EGEMFDPPL 353
           D  +  DL+    D                                     E E    PL
Sbjct: 492 DIGAHKDLITSYRDNNNHNILHLAGKLAPSEQLHVVSGAALQMQRELLWFKEVEKIIQPL 551

Query: 354 YMDIDNA----------------------------SSYMIVATLIVALVFGAAITVPGGN 385
           + +I ++                            SS M+VATLI  ++F A  TVPGGN
Sbjct: 552 FKEIKDSQGRTPQMLFTEEHKELAKEGEKWLKNTASSCMLVATLITTVMFAAIFTVPGGN 611

Query: 386 KEDVGLPFLRHKTSFKVFAVSNVISLVASSVSIVNFLSILAPRYAEEDFLYLLSRKLLFG 445
             + G P   H TSFKVFA+S+ ++L +S +S++ FLSIL  RYA+EDFL  L R+L  G
Sbjct: 612 NNNNGYPIFMHTTSFKVFALSDALALFSSVISVLMFLSILTSRYAQEDFLVSLPRRLSVG 671

Query: 446 LATLFIAIAAMMVVFSATRFIVFRDGSIWIANLAIVVSSMPVILF 490
           +ATLF +I  M++ F AT FIV      WI     +V+ +P ILF
Sbjct: 672 IATLFFSIITMLIAFGATFFIVLGHQLAWIVIPTTLVACIPAILF 716

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449473453|ref|XP_004153885.1| PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis sativus] gi|449525419|ref|XP_004169715.1| PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis sativus]

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 179/546 (32%), Positives = 269/546 (49%), Gaps = 98/546 (17%)

Query: 37  RRLKLYRAALNGDWAVAKDIYD-KYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMM 95
           +++ LY AAL GDW  A+ I        +   IT    TALH+AA A  ++FV++L+  M
Sbjct: 112 KKISLYHAALKGDWEKAESILKADTSWSVSNYITRDNETALHIAAGAKHVEFVEKLIDTM 171

Query: 96  STEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQ 155
           + +D+   N  G TA  +AA SG+V I E M+K NKD+ ++       P+  A + ++ Q
Sbjct: 172 TLDDMVIINTHGNTALCFAATSGVVRIAELMVKKNKDLPLIRGFGNATPLFMAISYQRKQ 231

Query: 156 MVLLLHKQT-KNSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKR--AENEETALH 212
           M   L   T +  LT  D IELL+  I + FY ++L++L   P+LA  R    N ETALH
Sbjct: 232 MASYLFSVTDRKQLTSQDQIELLIATIHSDFYDISLEILERNPKLAIMRDTKNNNETALH 291

Query: 213 VLARKDLTSTNQNRRGTFFQRCFNLGAE-----KEENKQ-ALELVESLWTEVVLSSESVS 266
           VLARK  ++ +     + +++  N   +     K+  K  A +LV+SLW  V L      
Sbjct: 292 VLARKP-SAISSKSEISIWKKPINSWTKGIIYGKDVMKTLAHQLVKSLWGHV-LRELPEK 349

Query: 267 EISKLIARPTRLIFDAAKRGNVLFLLILIREYADL------------------------- 301
           ++ K I  PT L+ DAA+ GNV FL++LI+ Y ++                         
Sbjct: 350 KMLKFIKHPTILLHDAARAGNVEFLILLIQSYPNIAWEDDDDGKNVFHIAVENRLENVFS 409

Query: 302 --------------MRKCDENGYTIFHVAV-------LNRL--------------EELFK 326
                          R   +  Y + H+A        LNR+              +E+ K
Sbjct: 410 LIHEISGLKDFSAKYRTTGKEKYNMLHLAAKLAAPNHLNRVSGAALQMQRELLWFKEVEK 469

Query: 327 FIYDAKSIADLMVDS------------------NDGEGEMFDPPLYMDIDNASSYMIVAT 368
            +  ++  A   VDS                   DGE  M         + A+S M+V+T
Sbjct: 470 IVLPSQRGAKCEVDSLIKLTPCELFTKEHKDLRKDGEEWM--------KNTANSCMLVST 521

Query: 369 LIVALVFGAAITVPGGNKEDVGLPFLRHKTSFKVFAVSNVISLVASSVSIVNFLSILAPR 428
           LI  +VF AA TVPGGN  + G P  +H+  F +F +S+   LV+SS SI+ FLSIL  R
Sbjct: 522 LIATVVFAAAFTVPGGNDGNSGTPIFQHEFWFTIFVISDAFGLVSSSTSILMFLSILTSR 581

Query: 429 YAEEDFLYLLSRKLLFGLATLFIAIAAMMVVFSATRFIVFRDGSIWIANLAIVVSSMPVI 488
           YAE+DFL+ L  KLL G+A+LFI+I  M++ FSAT F+++   ++WI      ++ +P+ 
Sbjct: 582 YAEDDFLHSLPSKLLVGIASLFISIVCMVIAFSATFFMLYNKKNMWIPATVTAIAIVPIS 641

Query: 489 LFIKQH 494
            F   H
Sbjct: 642 CFFALH 647

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425076|ref|XP_002271486.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  251 bits (641), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 181/496 (36%), Positives = 255/496 (51%), Gaps = 63/496 (12%)

Query: 39  LKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTE 98
           + LY AA+ GDW  A+ I+  +   +   IT   +T LH+AA A  + FV+E++KMM  +
Sbjct: 57  IPLYGAAMKGDWKTAEGIFKMFPPAVRMTITQGRDTTLHIAAAAKHVQFVEEMVKMMEPK 116

Query: 99  DLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVL 158
           DL  +NK   TA  +AAASG+V I E M+K N+++ M+    G +P+  AA L   +MV 
Sbjct: 117 DLELQNKYSNTALCFAAASGIVRIAEVMVKKNENLPMIQGGGGMIPLHMAALLGHSEMVR 176

Query: 159 LLHKQT-KNSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARK 217
            L+ +T    L   D + LL   I T  Y VAL +L   P LA +R EN+ETALH+LARK
Sbjct: 177 YLYNKTVHEHLAPGDWVGLLNTCISTDLYDVALDILHHHPALAVERDENDETALHLLARK 236

Query: 218 DLTSTNQNR---RGTFFQRCFNLGAEKEENKQAL-ELVESLWTEVVLSSESVSEISKLIA 273
               +  ++     TF      L A +  N   L ELV S + +++  +++         
Sbjct: 237 PSAFSGGDQLHMWNTFITSPLLLVAAELGNTVFLTELVGS-YPDLIWEADN--------- 286

Query: 274 RPTRLIFDAA---KRGNVLFLLILIREYADLMRKC-DENGYTIFHVA------------- 316
              R IF  A   +R ++  L+  I    DL+    D+N   + H+A             
Sbjct: 287 -DNRTIFHIAVLHRRESIFNLIYEIGSMKDLIVPYKDDNDNNMLHLAGRKAPLPQRNIVS 345

Query: 317 --VLNRLEELFKF---------IY------DAKSIADLMVDSN-----DGEGEMFDPPLY 354
              L    EL  F          Y      D K+  DL    +     DGE  M      
Sbjct: 346 GAALQMQRELLWFKEVEKIMLPTYRERKNKDGKTPRDLFTKEHKNLMKDGEKWMRG---- 401

Query: 355 MDIDNASSYMIVATLIVALVFGAAITVPGGNKEDVGLPFLRHKTSFKVFAVSNVISLVAS 414
                A+  M+VATLI  +VF AA TVPGG+ +D G+P L  K SF +FAVS+ I+L +S
Sbjct: 402 ----TAAQSMLVATLIATVVFAAAFTVPGGSNQDTGIPILLRKKSFMIFAVSDAIALFSS 457

Query: 415 SVSIVNFLSILAPRYAEEDFLYLLSRKLLFGLATLFIAIAAMMVVFSATRFIVFRDGSIW 474
           S SI+ FLSIL  RYAE+DFL  L  +L+FGL TLF++I +MMV F+ T F+VF  G  W
Sbjct: 458 STSILVFLSILTSRYAEDDFLESLPSRLMFGLITLFVSIISMMVTFTITFFLVFGHGFAW 517

Query: 475 IANLAIVVSSMPVILF 490
              L  V + +PV L+
Sbjct: 518 APMLIAVSACVPVTLY 533

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454911|ref|XP_004145197.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Cucumis sativus] gi|449472070|ref|XP_004153487.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Cucumis sativus]

 Score =  250 bits (639), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 177/528 (33%), Positives = 265/528 (50%), Gaps = 76/528 (14%)

Query: 38  RLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMST 97
           +  L  +ALNGDW  A+ IY KY+++    IT  G T LH++A     DFVK+L+  MS 
Sbjct: 76  KTSLRHSALNGDWKTAEAIYQKYELKPRDPITRNGETILHISAATQHKDFVKKLIGEMSQ 135

Query: 98  EDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMV 157
           ++L+ KNK G TA  +AA  G   I + +++ N+ + ++   +   P+  A +  + +M 
Sbjct: 136 DELSLKNKNGHTALCFAAEEGSEIIAKLLVENNEKLPLIRGDEDITPLYIAVSYRREKMA 195

Query: 158 LLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKR--AENEETALHVL 214
             L   T  N L D +   LL+  I + FY ++L++LR+ P+LAT R    N+ETALHVL
Sbjct: 196 SYLLSVTDLNQLNDQEKTLLLIAAIHSDFYGISLEILRNNPKLATMRNGKNNDETALHVL 255

Query: 215 ARKDLTSTNQNRRGTFFQRCFNLGAEKEENKQAL--ELVESLWTEVVLSSESVSEISKLI 272
           ARK        R    +++C   G   +++ + L  +LV SLW E VL      E    I
Sbjct: 256 ARKQSEIFRSRREINIWKKCIGYGTCNKDDAKTLARQLVNSLW-EHVLRDLDEKETLDFI 314

Query: 273 ARPTRLIFDAAKRGNVLFLLILI------------------------------------- 295
             PT L+ DAA+ GNV FL++LI                                     
Sbjct: 315 KHPTGLLHDAARAGNVEFLILLIRSYPDIVWEEDDDKKSIFHIAVENRLENVFNLIHEIS 374

Query: 296 --REYADLMRKCDENGYTIFHVAV-------LNRL--------EELFKFIYDAKSIADLM 338
             R+++   +   +  Y + H+A        LNR+         EL  +    K +    
Sbjct: 375 GPRDFSTRYKTTTKGNYNMLHLAAKLPALNHLNRVSGPALQMQRELLWYKEVEKIVLPCQ 434

Query: 339 VDS--NDGEGEMFDPPLYMD-------------IDNASSYMIVATLIVALVFGAAITVPG 383
            ++  NDG  ++    L+                + A+S M+VATLI  +VF AA TVPG
Sbjct: 435 REAKCNDGSIQLTPRELFTKEHTELRKHGEEWMKNTANSCMLVATLITTVVFAAAFTVPG 494

Query: 384 GNKEDVGLPFLRHKTSFKVFAVSNVISLVASSVSIVNFLSILAPRYAEEDFLYLLSRKLL 443
           GN ++ G P L+ K  F VF +S+ ++L++SS SI+ FLSIL  RY E+DFL  L  KLL
Sbjct: 495 GNDDETGDPTLQTKNWFVVFVISDAVALLSSSTSILMFLSILTSRYREDDFLRSLPSKLL 554

Query: 444 FGLATLFIAIAAMMVVFSATRFIVFRDGS-IWIANLAIVVSSMPVILF 490
            GL  LFI+I  M+V FSAT F+++R  S IW+      ++ +PV  F
Sbjct: 555 SGLVLLFISIVCMVVTFSATFFLLYRHPSNIWLPMTIAAMAIIPVSCF 602

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473665|ref|XP_003631341.1| PREDICTED: LOW QUALITY PROTEIN: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  247 bits (630), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 183/525 (34%), Positives = 268/525 (51%), Gaps = 76/525 (14%)

Query: 39  LKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTE 98
           + LYRAA+ GDW  AK I++ +   +   IT  G+T LH+AA A  + FV+E++K+M  E
Sbjct: 51  IPLYRAAMKGDWKTAKGIFEMFPAAVRFTITPGGDTTLHIAAAAKHVYFVEEMVKIMEPE 110

Query: 99  DLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVL 158
           DL  KN+   TAF++AAA+G+V I + M+K N+ + M+   D   P+  AA L   +MV 
Sbjct: 111 DLELKNQYSNTAFWFAAAAGIVGIAKAMVKKNEILPMIRAYDEMTPLHVAALLGHSEMVW 170

Query: 159 LLHKQTKN-SLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARK 217
            L+ +T +  LT  D ++LL   I T  Y VAL +    P LA +R  N ETALH+LARK
Sbjct: 171 YLYNKTDHEQLTVSDWVKLLNACISTDLYDVALDVSSHHPTLAVERDGNGETALHLLARK 230

Query: 218 DLTSTNQNRRGTFFQRCFNLGAEKEENKQ------ALELVESLWTEVVLSSESVSEISKL 271
               +  ++   +     ++  ++ E+K+      +L+LV+ LW +V++   S  EI  L
Sbjct: 231 PSAFSGGDQLHIWNTVINSISCKRVEDKKILRQNKSLKLVKHLWQQVIVQPHS--EILDL 288

Query: 272 IARPTRLIFDAAKRGNVLFLLILIREYADLMRKC-------------------------- 305
           I  P+ L+  AA+ GN +FL  LI  Y DL+ +                           
Sbjct: 289 IRSPSPLLLVAAELGNTVFLTELIAIYPDLIWEVDDHNRSIFHIAVLHRQENIFNLIYEI 348

Query: 306 -----------DENGYTIFHVA---------------VLNRLEELFKFIYDAKSIADLMV 339
                      DEN   I H+A                L    EL  F    K +     
Sbjct: 349 GSMKDLIVPNKDENDNNILHLAGRLAPPRQRNIVVGAALQMQRELLWFREVEKMVLPSFR 408

Query: 340 DSNDGEGE-------------MFDPPLYMDIDNASSYMIVATLIVALVFGAAITVPGGNK 386
           +  + +GE             M +   +M    A+  M+VATLI  +VF AA+TVPGG+ 
Sbjct: 409 ERKNRDGETPWDLFTKEHKDLMKEGEKWMR-GTAAQSMLVATLIATVVFAAALTVPGGSN 467

Query: 387 EDVGLPFLRHKTSFKVFAVSNVISLVASSVSIVNFLSI-LAPRYAEEDFLYLLSRKLLFG 445
           +D G+P    K    +FAVS+ I+L  S  SI+ FLSI L  RYA++DFL LL  +L+FG
Sbjct: 468 QDTGIPXFVEKEILHIFAVSDAIALFTSLTSILVFLSIVLTSRYADDDFLELLPSRLMFG 527

Query: 446 LATLFIAIAAMMVVFSATRFIVFRDGSIWIANLAIVVSSMPVILF 490
           L TLFI+I +MMV F+AT F++F  G  W   L  V + + V L+
Sbjct: 528 LFTLFISIISMMVTFTATFFLLFSHGVTWAPILVAVFAFLLVTLY 572

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147860696|emb|CAN81449.1| hypothetical protein VITISV_011174 [Vitis vinifera]

 Score =  241 bits (614), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 179/538 (33%), Positives = 257/538 (47%), Gaps = 93/538 (17%)

Query: 39  LKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTE 98
           + LY+AAL GDW  AK I++ +   +   IT   +T LH+AA A    FV+E++ +M   
Sbjct: 330 IPLYQAALKGDWETAKGIFEIHPTAVRVRITRNLDTVLHIAAAAKRTHFVEEVVGLMDPN 389

Query: 99  DLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVL 158
           DL  +N+   TAF +AAA+G V I E M+K N  + M+      +P+  AA L   +MV 
Sbjct: 390 DLELQNENSNTAFCFAAAAGTVRIAEVMVKKNDHLPMIRGNQQMMPLHMAALLGHSEMVW 449

Query: 159 LLHKQTKNS-LTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARK 217
            L+ +T +  L D+D I +L   I T  Y VAL +L   P+LAT R  N ETALH+LARK
Sbjct: 450 YLYNKTNHQDLKDEDWIGILNTCISTDLYEVALAILESHPKLATIRDGNYETALHLLARK 509

Query: 218 DLTSTNQNRRGTFFQRCFNLGAEKEENKQAL----------ELVESLWTEVVLSSESV-- 265
               + ++R G  +    N  +  + +   +           L  S +    L+S +   
Sbjct: 510 PSAFSGESRIG-IWTTFINPRSPLQVSTVVIIFLMVIPSNNFLFNSQFQSKPLNSSNAFG 568

Query: 266 --------SEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKC------------ 305
                   S+I+ LI  P RL+F AAK GN +FL  L+  Y DL+ +             
Sbjct: 569 SRLYNYLDSKIADLIRDPYRLVFVAAKLGNTIFLTELLHSYPDLIWRVXSQTRSIFHIAA 628

Query: 306 -------------------------DENGYTIFHV---------------AVLNRLEELF 325
                                    DENG  + H+               A L    EL 
Sbjct: 629 LHRQDRIFNLIYEIGSIKDMIMTYRDENGNNMLHLVGKLAHPSELNIISGAALQMQRELL 688

Query: 326 KFIYDAKSIADLMVDSNDGEGE-------------MFDPPLYMDIDNASSYMIVATLIVA 372
            F    K +     +  + +G+             M D   +M  + A+  M+VATLI  
Sbjct: 689 WFKEVEKLMQPTYREKKNRQGKTPWVLFTEEHRDLMKDGEKWMR-ETAAQSMLVATLIAT 747

Query: 373 LVFGAAITVPGGNKEDVGLPFLRHKTSFKVFAVSNVISLVASSVSIVNFLSILAPRYAEE 432
           +VF AA TVPGG+ +    P L       VFAVS+ ++L  SS SI+ FLSIL  RYAE+
Sbjct: 748 VVFSAAFTVPGGHSQQTDTPIL-----LMVFAVSDGLALFTSSTSILMFLSILTSRYAEQ 802

Query: 433 DFLYLLSRKLLFGLATLFIAIAAMMVVFSATRFIVFRDGSIWIANLAIVVSSMPVILF 490
           DFL+ L  +L+FGL  LF++I  MMV F+ T FIV+  G  W+  L  + ++ PV LF
Sbjct: 803 DFLHSLPSRLMFGLTALFVSIITMMVTFTITFFIVYHHGFAWVPILIALFATGPVSLF 860

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	507
TAIR|locus:2080240	574	AT3G54070 "AT3G54070" [Arabido	0.412	0.364	0.310	4.3e-44
TAIR|locus:2180228	625	AT5G04690 "AT5G04690" [Arabido	0.260	0.211	0.4	1.6e-29
TAIR|locus:2175413	669	AT5G04700 "AT5G04700" [Arabido	0.264	0.200	0.355	1.6e-28
TAIR|locus:2165174	347	AT5G35810 "AT5G35810" [Arabido	0.268	0.391	0.363	1.4e-26
TAIR|locus:2165194	282	AT5G35830 [Arabidopsis thalian	0.323	0.581	0.392	3.4e-22
TAIR|locus:2092522	590	ITN1 "INCREASED TOLERANCE TO N	0.307	0.264	0.310	7e-14
TAIR|locus:2175448	603	AT5G04730 "AT5G04730" [Arabido	0.258	0.217	0.325	1.8e-12
TAIR|locus:2045233	662	AT2G31820 [Arabidopsis thalian	0.282	0.216	0.333	2.9e-11
TAIR|locus:2075009	607	AT3G09550 [Arabidopsis thalian	0.303	0.253	0.280	3.4e-11
TAIR|locus:2128781	677	AT4G03460 "AT4G03460" [Arabido	0.181	0.135	0.333	7.1e-10

TAIR|locus:2080240 AT3G54070 "AT3G54070" [Arabidopsis thaliana (taxid:3702)]

 Score = 228 (85.3 bits), Expect = 4.3e-44, Sum P(3) = 4.3e-44
 Identities = 68/219 (31%), Positives = 103/219 (47%)

Query:    24 LSNGGANLSEDSLR---RLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAA 80
             L N   + SED  +   R  +Y+A L GDW  A  +  + +  + ++IT     ALH+A 
Sbjct:    34 LPNVEDHTSEDVTKPHSRNLMYKAVLTGDWKTASTLISRKECNVVEQITGNSEIALHIAV 93

Query:    81 QANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMD 140
              A   DFV+ LL+ M   DL+ KNK G T   +AAA G +E  E ++   +D+  + +  
Sbjct:    94 AAKHKDFVRNLLREMDPPDLSLKNKDGNTPLSFAAALGDIETAEMLINMIRDLPDISNEK 153

Query:   141 GTLPIVRAAALEQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQL---LRDR 196
                PI  AA    G+MV  L  +T    L D   + L   +I    Y V   +   + +R
Sbjct:   154 TMTPIHIAALYGHGEMVQYLFSKTSIKDLNDQQYLNLFHTMISADIYGVFADVPLWMLER 213

Query:   197 PRLATKRAE---NEETALHVLARKDLTSTNQNRRGTFFQ 232
               L  K      N   ALH+LARK    +++++   F Q
Sbjct:   214 VDLYRKELALYPNSNKALHLLARKTSAISHKSQLNLFQQ 252

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2180228 AT5G04690 "AT5G04690" [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 1.6e-29, Sum P(2) = 1.6e-29
 Identities = 54/135 (40%), Positives = 73/135 (54%)

Query:   358 DNASSYMIVATLIVALVFGAAITVPGGNKEDVG-LPFLRHKTSFKVFXXXXXXXXXXXXX 416
             D A S  +VA LIV + F A  TVPGG  ++ G  PF RH+  F +F             
Sbjct:   465 DTAMSCSLVAALIVTVTFAAIFTVPGGTDDNSGGRPFHRHERIFVIFIVSDLISCFAACT 524

Query:   417 XXXXFLSILAPRYAEEDFLYLLSRKLLFGLATLFIAIAAMMVVFSATRFIVFRDGSIWIA 476
                 FL IL  RYA +DFL+ L   ++ GL+TLF++IAAM+V FS+  F +F D   WI 
Sbjct:   525 SVLIFLGILTARYAFDDFLFSLPANMIAGLSTLFVSIAAMLVAFSSALFTIFNDP--WIV 582

Query:   477 NLAIVVSSMPVILFI 491
                I  +  P +LF+
Sbjct:   583 APTIFFACFPALLFV 597

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2175413 AT5G04700 "AT5G04700" [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 1.6e-28, Sum P(3) = 1.6e-28
 Identities = 48/135 (35%), Positives = 69/135 (51%)

Query:   358 DNASSYMIVATLIVALVFGAAITVPGGNKEDV-GLPFLRHKTSFKVFXXXXXXXXXXXXX 416
             D A S  +VA LIV + F A  TVPGG  ++  G PF      F +F             
Sbjct:   507 DTAMSCSLVAALIVTVTFAAVFTVPGGTDDNSKGKPFHLRDRRFIIFIVSDLISCFASCT 566

Query:   417 XXXXFLSILAPRYAEEDFLYLLSRKLLFGLATLFIAIAAMMVVFSATRFIVFRDGSIWIA 476
                 FL IL  RY+ +DFL  L  K++ GL+ LF++IAAM++ FS+  F +      WI 
Sbjct:   567 SVLIFLGILTARYSFDDFLVFLPTKMIAGLSILFVSIAAMLIAFSSALFTMMGKEGKWIV 626

Query:   477 NLAIVVSSMPVILFI 491
                I+ + +P +LF+
Sbjct:   627 APTILFACLPALLFV 641

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2165174 AT5G35810 "AT5G35810" [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 1.4e-26, Sum P(2) = 1.4e-26
 Identities = 52/143 (36%), Positives = 75/143 (52%)

Query:   358 DNASSYMIVATLIVALVFGAAITVPGGNKE--DV---GLPFLRHKTSFKVFXXXXXXXXX 412
             + A++ ++V+TLI  +VF AA T+PGGN    D+   G P  R +  F+VF         
Sbjct:   179 ETATACILVSTLIATVVFAAAFTLPGGNDTSGDIKTLGFPTFRKEFWFEVFIISDSVALL 238

Query:   413 XXXXXXXXFLSILAPRYAEEDFLYLLSRKLLFGLATLFIAIAAMMVVFSATRFIVFRDGS 472
                     FLSIL  RYAE  F   L  KL+ GL  LF++I +M++ F+AT  I+ RD  
Sbjct:   239 SSVTSIMIFLSILTSRYAEASFQTTLPTKLMLGLLALFVSIISMVLAFTAT-LILIRDQE 297

Query:   473 I-WIANLAIVVSSMPVILFIKQH 494
               W   L + V+S   + F+  H
Sbjct:   298 PKWSLILLVYVASATALSFVVLH 320

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2165194 AT5G35830 [Arabidopsis thaliana (taxid:3702)]

 Score = 263 (97.6 bits), Expect = 3.4e-22, P = 3.4e-22
 Identities = 66/168 (39%), Positives = 93/168 (55%)

Query:    24 LSNGGANLS-EDSLRR--LKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAA 80
             L N   N S +D LR   ++LY+AAL GDW  A  I  + K  I Q+IT+   T LH+A 
Sbjct:    71 LHNVQRNFSCDDKLRAKGVQLYQAALKGDWKAANGIIIEQKYIIYQKITSKSETVLHIAV 130

Query:    81 QANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMD 140
              A    FV+ LL  + + DLA +N  G TA  +AAASG+VEI + +++ NKD+ M+    
Sbjct:   131 AAKHEGFVRNLLGSLESNDLALRNVDGNTALCFAAASGVVEIAKMLIEKNKDLPMIRGGG 190

Query:   141 GTLPIVRAAALEQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYV 187
              T PI  AA    G+MV  L+K T+     D++ + L   +I    YV
Sbjct:   191 KTTPIHMAALFGHGEMVKYLYKNTRFREFNDEEFVNLFHAVISADIYV 238

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2092522 ITN1 "INCREASED TOLERANCE TO NACL" [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 7.0e-14, Sum P(2) = 7.0e-14
 Identities = 49/158 (31%), Positives = 71/158 (44%)

Query:    61 KVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMV 120
             +  I  E+  LG TAL  AA    +D VKELLK  S E +AKKN+ G      AA  G  
Sbjct:   118 RASIVNEVNELGETALFTAADKGHLDVVKELLKYSSRESIAKKNRSGYDPLHIAAIQGHH 177

Query:   121 EIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTKNSL--TDDDCIELLV 178
              IVE ++  +  ++         P+V AA     ++V  L  +  N L  +  +    L 
Sbjct:   178 AIVEVLLDHDATLSQTFGPSNATPLVSAAMRGHTEVVNQLLSKAGNLLEISRSNNKNALH 237

Query:   179 QLIETGFYVVALQLLRDRPRLATKRAENEETALHVLAR 216
                  G   V   LL   P+LA +  +  +TALH+  +
Sbjct:   238 LAARQGHVEVIKALLSKDPQLARRIDKKGQTALHMAVK 275

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IPI

GO:0034613 "cellular protein localization" evidence=IDA

TAIR|locus:2175448 AT5G04730 "AT5G04730" [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 1.8e-12, Sum P(3) = 1.8e-12
 Identities = 43/132 (32%), Positives = 64/132 (48%)

Query:   360 ASSYMIVATLIVALVFGAAITVPGGNKEDVGLPFLRHKTSFKVFXXXXXXXXXXXXXXXX 419
             A++   VA LI  + F A  TVPGG     G P + +   F+ F                
Sbjct:   444 ATACSFVAALIATVTFQAIFTVPGGIDGTSGSPLILNDLHFRAFIFTDTLAFFASCISVL 503

Query:   420 XFLSILAPRYAEEDFLYLLSRKLLFGLATLFIAIAAMMVVFSATRFIVFRDGSIWIANLA 479
              FLSIL  RY+ +DF+  L RK++ G + LFI+IA+M+V F  +     R     +  L 
Sbjct:   504 IFLSILTSRYSFDDFIVSLPRKMILGQSILFISIASMLVAFITSLSASMRHKPALVYPLK 563

Query:   480 IVVSSMPVILFI 491
               ++S P +LF+
Sbjct:   564 -PLASFPSLLFL 574

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2045233 AT2G31820 [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 2.9e-11, Sum P(3) = 2.9e-11
 Identities = 51/153 (33%), Positives = 75/153 (49%)

Query:    72 GNTALHVAAQANCIDFVKELLKMMSTED---LAKKNKIGCTAFFYAAASGMVEIVEEMMK 128
             G+++LH+AA+   +  VKEL++    E    L+K+N  G T  + AA +G   +VEEM+K
Sbjct:   151 GDSSLHIAARTGNLSKVKELIRGCGDELKELLSKQNLEGETPLYTAAENGHSIVVEEMLK 210

Query:   129 G-NKDIAMVPDMDGTLPIVRAAALEQGQM-VLLLHKQTKNSL---TDDDCIELLVQLIET 183
               + + A +   +G  P   AA  +QG + VL +  +T  +L   TD  C   L      
Sbjct:   211 HMDLETASIAARNGFDPFHVAA--KQGHLEVLKILLETFPNLAMTTDLSCTTALHTAATQ 268

Query:   184 GFYVVALQLLRDRPRLATKRAENEETALHVLAR 216
             G   V   LL     LA     N +TALH  AR
Sbjct:   269 GHIDVVNLLLETDSNLAKIAKNNGKTALHSAAR 301

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2075009 AT3G09550 [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 3.4e-11, Sum P(3) = 3.4e-11
 Identities = 44/157 (28%), Positives = 71/157 (45%)

Query:    67 EITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEM 126
             E+  LG T L  AA+   ID VKELL   + E L +KN  G  A   A + G   IV+ +
Sbjct:   138 EVNELGETPLFTAAEKGNIDVVKELLPYTTIESLMQKNLSGFDALHIACSQGHRSIVQLL 197

Query:   127 MKGNKDIAMVPDMDGTLPIVRAAALEQGQMV--LLLHKQTKNSLTDDDCIELLVQLIETG 184
             ++    ++         P+V AA     ++V  LL    +   ++  +    L      G
Sbjct:   198 LEHEPQLSKTVAQSNATPLVSAATRGHSEVVNELLAKDSSLLEISRSNGKNALHLAARQG 257

Query:   185 FYVVALQLLRDRPRLATKRAENEETALHVLARKDLTS 221
                +   LL   P+LA +  +  +T+LH +A K ++S
Sbjct:   258 HVDIVRTLLDKDPQLARRTDKKGQTSLH-MAVKGVSS 293

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2128781 AT4G03460 "AT4G03460" [Arabidopsis thaliana (taxid:3702)]

 Score = 100 (40.3 bits), Expect = 7.1e-10, Sum P(3) = 7.1e-10
 Identities = 32/96 (33%), Positives = 46/96 (47%)

Query:    40 KLYRAALNGDWAVAKDIYDKYKVEIG-QEITNLGNTALHVAAQANCIDFVKELLKMMSTE 98
             K   A   GD    +D+  K+ V I    + + GNT LH+AA A   D V  +L      
Sbjct:   100 KTIAAVRAGDETYLRDM--KFDVNIALSSVNDHGNTMLHLAAAAGHTDLVCYILNAYPGL 157

Query:    99 DLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIA 134
              L K N +G  A   AA +G + +VE ++   KDI+
Sbjct:   158 -LMKSNSMGEVALHVAAGAGHLAVVEALVSFIKDIS 192

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.01520066 hypothetical protein (610 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	507
pfam13962	114	pfam13962, PGG, Domain of unknown function	1e-19
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-11
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-10
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-09
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	4e-06
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	5e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.002
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	0.002

>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function

 Score = 83.7 bits (208), Expect = 1e-19
 Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 14/119 (11%)

Query: 356 DIDNASSY-MIVATLIVALVFGAAITVPGGNKED-----VGLPFLR-HKTSFKVFAVSNV 408
            ++   +  ++VATLI  + F A  T PGG  +D      G P L      FK F VSN 
Sbjct: 3   WLEKTRNSLLVVATLIATVTFAAGFTPPGGYWQDDGGHHAGTPILAGKPRRFKAFFVSNT 62

Query: 409 ISLVASSVSIVNFLSILAPRYAEEDFLYLLSRKLLFGLATLFIAIAAMMVVFSATRFIV 467
           I+ VAS V+++  L I+               +LL  L  L++++ ++MV F+A  + V
Sbjct: 63  IAFVASLVAVILLLYIVPSFSRRL-------PRLLALLTLLWLSLLSLMVAFAAGSYRV 114

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 61.6 bits (150), Expect = 1e-11
 Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 4/107 (3%)

Query: 67  EITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEM 126
                G T LH+AA    ++ VK LL+  +  D+  K+  G T    AA +G +EIV+ +
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGA--DVNAKDNDGRTPLHLAAKNGHLEIVKLL 59

Query: 127 MKGNKDIAMVPDMDGTLPIVRAAALEQGQMV-LLLHKQTKNSLTDDD 172
           ++   D+    D DG  P+  AA      +V LLL      +  D D
Sbjct: 60  LEKGADVNAR-DKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKD 105

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 56.5 bits (137), Expect = 3e-10
 Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 8/94 (8%)

Query: 41  LYRAALNGDWAVAKDIYDKY-KVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTED 99
           L+ AA NG+  + K + +K   V +G       +TALH+AA+   ++ VK LL+  +  D
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDT-----DTALHLAARNGNLEIVKLLLEHGA--D 53

Query: 100 LAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDI 133
           +  K+K G TA   AA +G +EIV+ +++   DI
Sbjct: 54  VNAKDKDGNTALHLAARNGNLEIVKLLLEHGADI 87

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 54.7 bits (132), Expect = 3e-09
 Identities = 38/115 (33%), Positives = 58/115 (50%), Gaps = 4/115 (3%)

Query: 10  WVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEIT 69
              +NG  E  ++LL NG    ++D+  R  L+ AA NG   + K + +K          
Sbjct: 13  LAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGA--DVNARD 70

Query: 70  NLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
             GNT LH+AA+   +D VK LLK     D+  ++K G T    AA +G +E+V+
Sbjct: 71  KDGNTPLHLAARNGNLDVVKLLLK--HGADVNARDKDGRTPLHLAAKNGHLEVVK 123

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 45.3 bits (108), Expect = 2e-06
 Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 5/85 (5%)

Query: 76  LHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAM 135
           LH+AA+   ++ VK LL+     D+   +    TA   AA +G +EIV+ +++   D+  
Sbjct: 1   LHLAAKNGNLELVKLLLE--KGADVNLGDT--DTALHLAARNGNLEIVKLLLEHGADVNA 56

Query: 136 VPDMDGTLPIVRAAALEQGQMVLLL 160
             D DG   +  AA     ++V LL
Sbjct: 57  K-DKDGNTALHLAARNGNLEIVKLL 80

Length = 91

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 43.8 bits (104), Expect = 4e-06
 Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 2/53 (3%)

Query: 72  GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
           G TALH AA +  ++ VK LL+     D+ + ++ G TA   AA +G +E+++
Sbjct: 1   GRTALHKAAISGRLELVKYLLEK--GVDINRTDEDGNTALHIAAENGNLEVLK 51

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 37.7 bits (88), Expect = 5e-04
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 70  NLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYA 114
             GNT LH+AA+   ++ V+ LLK     DL  ++  G TA   A
Sbjct: 14  GNGNTPLHLAAKYGALELVQWLLKP--GVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 35.6 bits (83), Expect = 0.002
 Identities = 11/22 (50%), Positives = 16/22 (72%)

Query: 72 GNTALHVAAQANCIDFVKELLK 93
          GNT LH+AA+   ++ VK LL+
Sbjct: 2  GNTPLHLAARNGHLEVVKLLLE 23

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 39.4 bits (91), Expect = 0.002
 Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 15/140 (10%)

Query: 30  NLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEIT---NLGNTALHVAAQAN--- 83
             + D   RL L+ AA  GD     D   K  +  G ++      G+T LH+AA      
Sbjct: 66  LAARDLDGRLPLHSAASKGD-----DKIVKLLLASGADVNAKDADGDTPLHLAALNGNPP 120

Query: 84  --CIDFVKELLKM-MSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMD 140
              I+  K LL+     +    +++ G T   +AA +G  +IVE +++   D     +  
Sbjct: 121 EGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPN-SRNSY 179

Query: 141 GTLPIVRAAALEQGQMVLLL 160
           G   +  AA   + ++V LL
Sbjct: 180 GVTALDPAAKNGRIELVKLL 199

Length = 235

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	507
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	100.0
PHA02792	631	ankyrin-like protein; Provisional	100.0
PHA02792	631	ankyrin-like protein; Provisional	99.98
KOG0508	615	consensus Ankyrin repeat protein [General function	99.98
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.97
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.97
PHA02859	209	ankyrin repeat protein; Provisional	99.95
PHA02859	209	ankyrin repeat protein; Provisional	99.95
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.95
PHA02795	437	ankyrin-like protein; Provisional	99.95
PHA02795	437	ankyrin-like protein; Provisional	99.94
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.94
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.93
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.92
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.92
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.92
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.91
PF13962	113	PGG: Domain of unknown function	99.91
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.91
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.91
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.88
PHA02741	169	hypothetical protein; Provisional	99.86
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.86
KOG0514	452	consensus Ankyrin repeat protein [General function	99.86
KOG0514	452	consensus Ankyrin repeat protein [General function	99.86
PHA02743	166	Viral ankyrin protein; Provisional	99.85
PHA02743	166	Viral ankyrin protein; Provisional	99.85
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.84
PHA02741	169	hypothetical protein; Provisional	99.84
PHA02884	300	ankyrin repeat protein; Provisional	99.83
PHA02736	154	Viral ankyrin protein; Provisional	99.82
PHA02884	300	ankyrin repeat protein; Provisional	99.81
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.81
PHA02736	154	Viral ankyrin protein; Provisional	99.81
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.79
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.76
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.74
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.73
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.69
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.69
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.68
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.68
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.67
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.57
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.5
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.49
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.47
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.42
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.4
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.4
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.36
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.32
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.32
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.31
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.31
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.3
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.29
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.98
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.84
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.83
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.77
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.66
PF13606	30	Ank_3: Ankyrin repeat	98.65
PF13606	30	Ank_3: Ankyrin repeat	98.58
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.56
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.52
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.52
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.5
KOG0522	560	consensus Ankyrin repeat protein [General function	98.49
KOG0522	560	consensus Ankyrin repeat protein [General function	98.46
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.44
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.43
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.28
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.26
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.1
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.04
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.02
KOG2384	223	consensus Major histocompatibility complex protein	98.01
KOG0511	516	consensus Ankyrin repeat protein [General function	97.93
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.91
KOG0511	516	consensus Ankyrin repeat protein [General function	97.84
KOG2384	223	consensus Major histocompatibility complex protein	97.75
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.73
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.52
KOG2505	591	consensus Ankyrin repeat protein [General function	96.42
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.19
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	96.16
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.66
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	95.56
cd07920	322	Pumilio Pumilio-family RNA binding domain. Puf rep	94.15
KOG2505	591	consensus Ankyrin repeat protein [General function	93.98
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	93.97
cd07920	322	Pumilio Pumilio-family RNA binding domain. Puf rep	90.47
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	89.48
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	86.74

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=1.3e-44  Score=357.13  Aligned_cols=302  Identities=21%  Similarity=0.167  Sum_probs=272.2

Q ss_pred             CcccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHc
Q 041247            3 NILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQA   82 (507)
Q Consensus         3 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~   82 (507)
                      .|.+|||+|++....+.|++|++.|++....+..+.+|+|+|+..|..++++.|++. +.+++.. |+.|.||||+||..
T Consensus        87 ~~n~~l~~a~~~~~~~~i~~Lls~gad~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~-~~dvnl~-de~~~TpLh~A~~~  164 (929)
T KOG0510|consen   87 ADNTPLHAAVEYNQGDKIQVLLSYGADTPLRNLNKNAPLHLAADSGNYSCLKLLLDY-GADVNLE-DENGFTPLHLAARK  164 (929)
T ss_pred             ccCchhHHHhhcchHHHHHHHHhcCCCCChhhhhccCchhhccccchHHHHHHHHHh-cCCcccc-ccCCCchhhHHHhc
Confidence            367999999999999999999999999999999999999999999999999977765 6999998 99999999999999


Q ss_pred             CCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHh-----cCCCCCccCCCCCChHHHHHHHcCcHHHH
Q 041247           83 NCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMK-----GNKDIAMVPDMDGTLPIVRAAALEQGQMV  157 (507)
Q Consensus        83 g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~-----~~~~~~~~~~~~g~tpL~~A~~~g~~~~v  157 (507)
                      ++.|..+.|++.  ++++...|.+|++|+|.|+++|..|+.+..+.     ++..+ +..|+.+.||||.|+..|+.+++
T Consensus       165 ~~~E~~k~Li~~--~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~i-n~~~n~~~~pLhlAve~g~~e~l  241 (929)
T KOG0510|consen  165 NKVEAKKELINK--GADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHI-NFDNNEKATPLHLAVEGGDIEML  241 (929)
T ss_pred             ChHHHHHHHHhc--CCCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhccc-ccccCCCCcchhhhhhcCCHHHH
Confidence            999988999998  89999999999999999999999999999998     45555 78899999999999999999999


Q ss_pred             HHHHhccc--cc--------------cCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCcc
Q 041247          158 LLLHKQTK--NS--------------LTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTS  221 (507)
Q Consensus       158 ~~Ll~~~~--~~--------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~  221 (507)
                      +.+++.+.  .+              ..|.+|.||||+|++.|+.+.+..|+.. +.+++.++.++.||||.|+.+|+  
T Consensus       242 k~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~-Ga~I~~kn~d~~spLH~AA~yg~--  318 (929)
T KOG0510|consen  242 KMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGF-GASINSKNKDEESPLHFAAIYGR--  318 (929)
T ss_pred             HHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHc-CCcccccCCCCCCchHHHHHccc--
Confidence            99999886  11              2689999999999999999999999998 78899999999999999999999  


Q ss_pred             ccccccccccccccchhhhhhhhHHHHHHHHHHHH-HHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCcc
Q 041247          222 TNQNRRGTFFQRCFNLGAEKEENKQALELVESLWT-EVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYAD  300 (507)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~-~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~  300 (507)
                                                ...++.|++ .+....    +  +.+..|.||||.|+++|+..+++.|++.|+.
T Consensus       319 --------------------------~ntv~rLL~~~~~rll----n--e~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~  366 (929)
T KOG0510|consen  319 --------------------------INTVERLLQESDTRLL----N--ESDLHGMTPLHLAAKSGHDRVVQLLLNKGAL  366 (929)
T ss_pred             --------------------------HHHHHHHHhCcCcccc----c--cccccCCCchhhhhhcCHHHHHHHHHhcChh
Confidence                                      999999998 322111    2  3344459999999999999999999999999


Q ss_pred             ccc--ccccCCCchHHHHHHhCchHHHHHHHhchhhhhhhhccccCCCCC
Q 041247          301 LMR--KCDENGYTIFHVAVLNRLEELFKFIYDAKSIADLMVDSNDGEGEM  348 (507)
Q Consensus       301 ~~~--~~d~~g~t~L~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~d~~g~t  348 (507)
                      ..+  ..|++|.||||.|+++|+..+|+.|+.+|++.    ..+|+.|.+
T Consensus       367 ~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I----~~~n~~g~S  412 (929)
T KOG0510|consen  367 FLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADI----GVKNKKGKS  412 (929)
T ss_pred             hhcccccccCCchhhhHHHHhccHHHHHHHHHcCCce----eeccccccc
Confidence            855  56999999999999999999999999999998    566666665

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=1.1e-43  Score=356.53  Aligned_cols=308  Identities=13%  Similarity=0.034  Sum_probs=248.9

Q ss_pred             ccHHHHHHHc--CCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHc
Q 041247            5 LSGLGWVMTN--GIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQA   82 (507)
Q Consensus         5 ~t~L~~A~~~--g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~   82 (507)
                      .++||.++..  ++.+++++|+++|++++.+|..|.||||+|+..|+.++++.|++ ++++++.+ |..|.||||+|+..
T Consensus        38 ~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~-~GAdin~~-d~~g~TpLh~A~~~  115 (446)
T PHA02946         38 YHILHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLT-HGADPNAC-DKQHKTPLYYLSGT  115 (446)
T ss_pred             ChHHHHHHHhcCCCHHHHHHHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHH-CcCCCCCC-CCCCCCHHHHHHHc
Confidence            5899987643  46689999999999999999999999999999999999998886 58999988 99999999999887


Q ss_pred             CC--HHHHHHHHHcCCchhhcc-cccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCc--HHHH
Q 041247           83 NC--IDFVKELLKMMSTEDLAK-KNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQ--GQMV  157 (507)
Q Consensus        83 g~--~e~v~~Ll~~~~~~~~~~-~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~--~~~v  157 (507)
                      ++  .+++++|+++  |++++. .|..|.|||| |+..|+.+++++|++.|+++ +.+|..|+||||+|+..++  .+++
T Consensus       116 ~~~~~e~v~lLl~~--Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~-~~~d~~G~t~Lh~A~~~~~~~~~~v  191 (446)
T PHA02946        116 DDEVIERINLLVQY--GAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEA-RIVDKFGKNHIHRHLMSDNPKASTI  191 (446)
T ss_pred             CCchHHHHHHHHHc--CCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccc-cccCCCCCCHHHHHHHhcCCCHHHH
Confidence            64  7999999999  889885 6889999998 66778999999999999997 8899999999999887654  6899


Q ss_pred             HHHHhccc-cccCCCChhhHHHHHHHcC--ChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCc-cc-cccccccccc
Q 041247          158 LLLHKQTK-NSLTDDDCIELLVQLIETG--FYVVALQLLRDRPRLATKRAENEETALHVLARKDLT-ST-NQNRRGTFFQ  232 (507)
Q Consensus       158 ~~Ll~~~~-~~~~~~~g~t~L~~A~~~~--~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~-~~-~~~~~~~~~~  232 (507)
                      ++|++.|+ .+.+|.+|.||||+|+..+  +.++++.|++  +.+++.+|.+|+||||+|+..++. ++ ..++..+...
T Consensus       192 ~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~--gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~  269 (446)
T PHA02946        192 SWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP--STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVI  269 (446)
T ss_pred             HHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCC
Confidence            99999999 8889999999999999986  7889988884  577889999999999999998874 33 3344444433


Q ss_pred             cccchhhhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCcccccccccCCCch
Q 041247          233 RCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTI  312 (507)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~  312 (507)
                      ..-.....  ......++++.+.+++.           ..  |.||||+|+++|+.++|++|+++++        .|+||
T Consensus       270 ~~~~~~~a--~~~~~~~~~e~l~~~g~-----------~~--~~TpLh~Aa~~g~~eivk~Ll~~~~--------~~~t~  326 (446)
T PHA02946        270 TDQTVNIC--IFYDRDDVLEIINDKGK-----------QY--DSTDFKMAVEVGSIRCVKYLLDNDI--------ICEDA  326 (446)
T ss_pred             CCcHHHHH--HHcCchHHHHHHHHcCc-----------cc--CCCHHHHHHHcCCHHHHHHHHHCCC--------ccccH
Confidence            22111111  01112355555554432           12  2799999999999999999998753        47899


Q ss_pred             HHHHHHhCchHHHHHHHhchhhhhhhhccccCCCCC
Q 041247          313 FHVAVLNRLEELFKFIYDAKSIADLMVDSNDGEGEM  348 (507)
Q Consensus       313 L~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~d~~g~t  348 (507)
                      ||+|+.+++.+++++|+.+|+++    +.+ .+|+|
T Consensus       327 L~~A~~~~~~~~v~~Ll~~ga~~----n~~-~~G~t  357 (446)
T PHA02946        327 MYYAVLSEYETMVDYLLFNHFSV----DSV-VNGHT  357 (446)
T ss_pred             HHHHHHhCHHHHHHHHHHCCCCC----CCc-ccccc
Confidence            99999999999999999999987    443 47888

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=1.1e-43  Score=356.51  Aligned_cols=301  Identities=15%  Similarity=0.084  Sum_probs=246.3

Q ss_pred             CCcccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCC--HHHHHHHHhhchhccccccCCCCCcHHHHH
Q 041247            2 DNILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGD--WAVAKDIYDKYKVEIGQEITNLGNTALHVA   79 (507)
Q Consensus         2 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~--~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~A   79 (507)
                      .+|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++  .++++.|++ ++++++...|..|.|||| |
T Consensus        70 ~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~-~Gadin~~~d~~g~tpL~-a  147 (446)
T PHA02946         70 DDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQ-YGAKINNSVDEEGCGPLL-A  147 (446)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHH-cCCCcccccCCCCCcHHH-H
Confidence            368999999999999999999999999999999999999999998764  788997765 588888655899999998 6


Q ss_pred             HHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcC--cHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcC--cHH
Q 041247           80 AQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASG--MVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALE--QGQ  155 (507)
Q Consensus        80 a~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g--~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g--~~~  155 (507)
                      +..|+.+++++|++.  +++++.+|..|+||||+|+..+  +.+++++|++.|+++ +.+|.+|.||||+|+..|  +.+
T Consensus       148 a~~~~~~vv~~Ll~~--gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadi-n~~d~~G~TpLH~Aa~~~~~~~~  224 (446)
T PHA02946        148 CTDPSERVFKKIMSI--GFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISP-SKPDHDGNTPLHIVCSKTVKNVD  224 (446)
T ss_pred             HHCCChHHHHHHHhc--cccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCCcHH
Confidence            677999999999998  8999999999999999998755  479999999999997 899999999999999986  789


Q ss_pred             HHHHHHhccc-cccCCCChhhHHHHHHHcCC-hHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCcccccccccccccc
Q 041247          156 MVLLLHKQTK-NSLTDDDCIELLVQLIETGF-YVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQR  233 (507)
Q Consensus       156 ~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~  233 (507)
                      ++++|++ ++ .+.+|.+|.||||.|++.++ .++++.|++.. ..     ..++| +|.|+..+..++...+...   +
T Consensus       225 iv~lLl~-gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g-~~-----~~~~~-~~~a~~~~~~~~~e~l~~~---g  293 (446)
T PHA02946        225 IINLLLP-STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTS-NV-----ITDQT-VNICIFYDRDDVLEIINDK---G  293 (446)
T ss_pred             HHHHHHc-CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCC-CC-----CCCcH-HHHHHHcCchHHHHHHHHc---C
Confidence            9999986 56 88899999999999999988 58888888874 22     22444 8888887763321111110   0


Q ss_pred             ccchhhh--hhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCcccccccccCCCc
Q 041247          234 CFNLGAE--KEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYT  311 (507)
Q Consensus       234 ~~~~~~~--~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t  311 (507)
                      .....-.  .+......+++++|++++.            +  |+||||+|+.+++.+++++|+++|+++ +.. ..|+|
T Consensus       294 ~~~~~TpLh~Aa~~g~~eivk~Ll~~~~------------~--~~t~L~~A~~~~~~~~v~~Ll~~ga~~-n~~-~~G~t  357 (446)
T PHA02946        294 KQYDSTDFKMAVEVGSIRCVKYLLDNDI------------I--CEDAMYYAVLSEYETMVDYLLFNHFSV-DSV-VNGHT  357 (446)
T ss_pred             cccCCCHHHHHHHcCCHHHHHHHHHCCC------------c--cccHHHHHHHhCHHHHHHHHHHCCCCC-CCc-ccccc
Confidence            0000000  2333456899999997542            2  289999999999999999999999998 665 58999


Q ss_pred             hHHHHHHhCchHHHHHHHhchhh
Q 041247          312 IFHVAVLNRLEELFKFIYDAKSI  334 (507)
Q Consensus       312 ~L~~A~~~~~~~iv~~Ll~~ga~  334 (507)
                      |||+|+++++.++++.|+.+..+
T Consensus       358 ~l~~a~~~~~~~~~~~ll~~~~~  380 (446)
T PHA02946        358 CMSECVRLNNPVILSKLMLHNPT  380 (446)
T ss_pred             HHHHHHHcCCHHHHHHHHhcCcc
Confidence            99999999999999999986443

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=7e-43  Score=372.95  Aligned_cols=326  Identities=12%  Similarity=0.030  Sum_probs=250.8

Q ss_pred             CcccHHHHHHHcCCChhhHHHHhCCCCC-CCccccCCHHhHHHH------------------------------------
Q 041247            3 NILSGLGWVMTNGIKEAPRVLLSNGGAN-LSEDSLRRLKLYRAA------------------------------------   45 (507)
Q Consensus         3 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~Lh~Aa------------------------------------   45 (507)
                      .+.||||+|+..||.|+|+.|+++.++. ...|..|.||||+|+                                    
T Consensus        40 ~~~t~LH~A~~~g~~e~V~~ll~~~~~~~~~~~~~~~tpLh~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  119 (682)
T PHA02876         40 IPFTAIHQALQLRQIDIVEEIIQQNPELIYITDHKCHSTLHTICIIPNVMDIVISLTLDCDIILDIKYASIILNKHKLDE  119 (682)
T ss_pred             ccchHHHHHHHHHhhhHHHHHHHhCcccchhhchhhccccccccCCCCccccccccccchhhcccccHHHHHHHHHHHHH
Confidence            3679999999999999999999987663 356778999999665                                    


Q ss_pred             ----------------------------------HcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHH
Q 041247           46 ----------------------------------LNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKEL   91 (507)
Q Consensus        46 ----------------------------------~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~L   91 (507)
                                                        ..|+.+++++|++ .+++++.+ |..|+||||+|++.|+.++|++|
T Consensus       120 ~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~k~Ll~-~Gadvn~~-d~~G~TpLh~Aa~~G~~~iv~~L  197 (682)
T PHA02876        120 ACIHILKEAISGNDIHYDKINESIEYMKLIKERIQQDELLIAEMLLE-GGADVNAK-DIYCITPIHYAAERGNAKMVNLL  197 (682)
T ss_pred             HHHHHHHHHhcCCcccHHhhccchhhhHHHHHHHHCCcHHHHHHHHh-CCCCCCCC-CCCCCCHHHHHHHCCCHHHHHHH
Confidence                                              4567788886665 58889888 88999999999999999999999


Q ss_pred             HHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCC----------------------------CccCCCCCCh
Q 041247           92 LKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDI----------------------------AMVPDMDGTL  143 (507)
Q Consensus        92 l~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~----------------------------~~~~~~~g~t  143 (507)
                      +++  |++++..+..|.||||+|+..|+.+++++|++.++++                            .+..|..|.|
T Consensus       198 L~~--Gad~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~T  275 (682)
T PHA02876        198 LSY--GADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNT  275 (682)
T ss_pred             HHC--CCCcCccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCC
Confidence            998  8888888888999999998888888877776654432                            1456677888


Q ss_pred             HHHHHHHcCcH-HHHHHHHhccc-cccCCCChhhHHHHHHHcC-ChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCc
Q 041247          144 PIVRAAALEQG-QMVLLLHKQTK-NSLTDDDCIELLVQLIETG-FYVVALQLLRDRPRLATKRAENEETALHVLARKDLT  220 (507)
Q Consensus       144 pL~~A~~~g~~-~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~  220 (507)
                      |||+|+..|+. +++++|++.++ .+..|.+|.||||.|+..| ..++++.|+.. +.+++.+|..|.||||+|+..+..
T Consensus       276 pLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~-gadin~~d~~g~TpLh~A~~~~~~  354 (682)
T PHA02876        276 PLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIML-GADVNAADRLYITPLHQASTLDRN  354 (682)
T ss_pred             HHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHc-CCCCCCcccCCCcHHHHHHHhCCc
Confidence            88888888875 58888888888 7778888888888888888 47777777776 666777888888888888875532


Q ss_pred             -cc-cccccccccc------cccchhhh-hhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCc-HHH
Q 041247          221 -ST-NQNRRGTFFQ------RCFNLGAE-KEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGN-VLF  290 (507)
Q Consensus       221 -~~-~~~~~~~~~~------~~~~~~~~-~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~-~~i  290 (507)
                       ++ ..++..|.+.      +.+|+.++ ..++   .+++++|+++++ +++.    .+  ..|.||||+|+..++ .++
T Consensus       355 ~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~---~~iv~~Ll~~ga-d~~~----~~--~~g~T~Lh~A~~~~~~~~~  424 (682)
T PHA02876        355 KDIVITLLELGANVNARDYCDKTPIHYAAVRNN---VVIINTLLDYGA-DIEA----LS--QKIGTALHFALCGTNPYMS  424 (682)
T ss_pred             HHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCC---HHHHHHHHHCCC-Cccc----cC--CCCCchHHHHHHcCCHHHH
Confidence             22 2233333332      34555555 3333   788888888877 6654    22  334788888887655 567


Q ss_pred             HHHHHHHCcccccccccCCCchHHHHHHhC-chHHHHHHHhchhhhhhhhccccCCCCC
Q 041247          291 LLILIREYADLMRKCDENGYTIFHVAVLNR-LEELFKFIYDAKSIADLMVDSNDGEGEM  348 (507)
Q Consensus       291 v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~-~~~iv~~Ll~~ga~~~~~~~~~d~~g~t  348 (507)
                      ++.|++.|+++ +.+|..|+||||+|+..+ +.+++++|++.|+++    +.+|..|+|
T Consensus       425 vk~Ll~~gadi-n~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~----n~~d~~g~t  478 (682)
T PHA02876        425 VKTLIDRGANV-NSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADV----NAINIQNQY  478 (682)
T ss_pred             HHHHHhCCCCC-CcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCC----CCCCCCCCC
Confidence            88888888887 888888888888888866 678888888888887    778888888

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=4.8e-42  Score=352.75  Aligned_cols=290  Identities=18%  Similarity=0.133  Sum_probs=262.6

Q ss_pred             HHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcC---CHHHHHHHHhhchhccccccCCCCCcHHHHHHHcC-C
Q 041247            9 GWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNG---DWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQAN-C   84 (507)
Q Consensus         9 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g---~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g-~   84 (507)
                      ..++..++.+++++|+++|++++..+..|.||||.|+..|   +.++++.|++ .+++++.+ +..|.||||+|+..| +
T Consensus        19 ~~~~~~~~~~~v~~Ll~~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~-~Gadin~~-~~~g~TpLh~A~~~~~~   96 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLE-AGADVNAP-ERCGFTPLHLYLYNATT   96 (471)
T ss_pred             HHcCCCCCHHHHHHHHHcCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHH-CCCCCCCC-CCCCCCHHHHHHHcCCc
Confidence            4567888999999999999999999999999999999999   9999998876 58999998 889999999999999 5


Q ss_pred             HHHHHHHHHcCCchhhcccccCCCcHHHHHH--HcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcC--cHHHHHHH
Q 041247           85 IDFVKELLKMMSTEDLAKKNKIGCTAFFYAA--ASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALE--QGQMVLLL  160 (507)
Q Consensus        85 ~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~--~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g--~~~~v~~L  160 (507)
                      .+++++|+++  |++++.+|..|+||||+|+  ..++.+++++|+++|+++ +.+|..|.||||+|+..+  +.+++++|
T Consensus        97 ~~iv~lLl~~--ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~-~~~d~~g~tpL~~a~~~~~~~~~iv~~L  173 (471)
T PHA03095         97 LDVIKLLIKA--GADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADV-NALDLYGMTPLAVLLKSRNANVELLRLL  173 (471)
T ss_pred             HHHHHHHHHc--CCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCCCHHHHHHH
Confidence            9999999999  8999999999999999999  566899999999999997 889999999999999876  67999999


Q ss_pred             Hhccc-cccCCCChhhHHHHHHHc--CChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCccccccccccccccccch
Q 041247          161 HKQTK-NSLTDDDCIELLVQLIET--GFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNL  237 (507)
Q Consensus       161 l~~~~-~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~  237 (507)
                      ++.|+ ....|..|.||||.++..  ++.++++.|++. +.+++.+|..|+||||+|+..++..                
T Consensus       174 l~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~-g~~~~~~d~~g~tpLh~Aa~~~~~~----------------  236 (471)
T PHA03095        174 IDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRA-GCDPAATDMLGNTPLHSMATGSSCK----------------  236 (471)
T ss_pred             HHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHc-CCCCcccCCCCCCHHHHHHhcCCch----------------
Confidence            99999 666699999999999875  678899999988 6788899999999999999998711                


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCcccccccccCCCchHHHHH
Q 041247          238 GAEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIFHVAV  317 (507)
Q Consensus       238 ~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~  317 (507)
                                ..+++.+++.+. +++.    .+.  .|+||||+|+..|+.+++++|++.|+++ +.+|..|+||||+|+
T Consensus       237 ----------~~~v~~ll~~g~-din~----~d~--~g~TpLh~A~~~~~~~~v~~LL~~gad~-n~~~~~g~tpl~~A~  298 (471)
T PHA03095        237 ----------RSLVLPLLIAGI-SINA----RNR--YGQTPLHYAAVFNNPRACRRLIALGADI-NAVSSDGNTPLSLMV  298 (471)
T ss_pred             ----------HHHHHHHHHcCC-CCCC----cCC--CCCCHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHH
Confidence                      467888898888 7765    333  4499999999999999999999999998 999999999999999


Q ss_pred             HhCchHHHHHHHhchhhhhhh
Q 041247          318 LNRLEELFKFIYDAKSIADLM  338 (507)
Q Consensus       318 ~~~~~~iv~~Ll~~ga~~~~~  338 (507)
                      .+++.++++.|++.+++.+..
T Consensus       299 ~~~~~~~v~~LL~~~~~~~~~  319 (471)
T PHA03095        299 RNNNGRAVRAALAKNPSAETV  319 (471)
T ss_pred             HhCCHHHHHHHHHhCCCHHHH
Confidence            999999999999999987543

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=7.8e-42  Score=364.90  Aligned_cols=315  Identities=13%  Similarity=0.059  Sum_probs=215.6

Q ss_pred             cHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCH
Q 041247            6 SGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCI   85 (507)
Q Consensus         6 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~   85 (507)
                      ++|+.|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++. +++++.. +..|.||||+|+..|+.
T Consensus       147 ~~l~~~i~~~~~~i~k~Ll~~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~-Gad~n~~-~~~g~t~L~~A~~~~~~  224 (682)
T PHA02876        147 KLIKERIQQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSY-GADVNII-ALDDLSVLECAVDSKNI  224 (682)
T ss_pred             HHHHHHHHCCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHC-CCCcCcc-CCCCCCHHHHHHHcCCH
Confidence            556666666777777777777766666666677777777777777777766543 5666655 66666676666666666


Q ss_pred             HHHHHHHHcC---------------------------CchhhcccccCCCcHHHHHHHcCcH-HHHHHHHhcCCCCCccC
Q 041247           86 DFVKELLKMM---------------------------STEDLAKKNKIGCTAFFYAAASGMV-EIVEEMMKGNKDIAMVP  137 (507)
Q Consensus        86 e~v~~Ll~~~---------------------------~~~~~~~~d~~g~t~Lh~A~~~g~~-~iv~~Ll~~~~~~~~~~  137 (507)
                      ++++.|++..                           .|.+++..|..|+||||+|+..|+. +++++|++.|+++ +.+
T Consensus       225 ~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadi-n~~  303 (682)
T PHA02876        225 DTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADV-NAK  303 (682)
T ss_pred             HHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCC-CCc
Confidence            6666555432                           0334555666677777777777664 4677777777775 666


Q ss_pred             CCCCChHHHHHHHcC-cHHHHHHHHhccc-cccCCCChhhHHHHHHHcC-ChHHHHHHHhcCchhhhhcccCCchHHHHH
Q 041247          138 DMDGTLPIVRAAALE-QGQMVLLLHKQTK-NSLTDDDCIELLVQLIETG-FYVVALQLLRDRPRLATKRAENEETALHVL  214 (507)
Q Consensus       138 ~~~g~tpL~~A~~~g-~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A  214 (507)
                      |.+|.||||+|+..| +.++++.|+..++ .+..|..|.||||.|+..+ +.++++.|++. +.+++.+|..|+||||+|
T Consensus       304 d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~-gadin~~d~~G~TpLh~A  382 (682)
T PHA02876        304 NIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLEL-GANVNARDYCDKTPIHYA  382 (682)
T ss_pred             CCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHc-CCCCccCCCCCCCHHHHH
Confidence            777777777777776 4677777777776 6666777777777776643 45555555554 566666777777777777


Q ss_pred             HhcCCccc-ccccccccccc------ccchhhhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcC-
Q 041247          215 ARKDLTST-NQNRRGTFFQR------CFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRG-  286 (507)
Q Consensus       215 ~~~~~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g-  286 (507)
                      +..++.++ ..++..|...+      .+++.++.. ......+++.|+++++ +++.    .+.+  |+||||+|++.| 
T Consensus       383 a~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~-~~~~~~~vk~Ll~~ga-din~----~d~~--G~TpLh~Aa~~~~  454 (682)
T PHA02876        383 AVRNNVVIINTLLDYGADIEALSQKIGTALHFALC-GTNPYMSVKTLIDRGA-NVNS----KNKD--LSTPLHYACKKNC  454 (682)
T ss_pred             HHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHH-cCCHHHHHHHHHhCCC-CCCc----CCCC--CChHHHHHHHhCC
Confidence            77776665 33333343332      233333310 0112567899999988 7765    3444  499999999977 


Q ss_pred             cHHHHHHHHHHCcccccccccCCCchHHHHHHhCchHHHHHHHhchhhh
Q 041247          287 NVLFLLILIREYADLMRKCDENGYTIFHVAVLNRLEELFKFIYDAKSIA  335 (507)
Q Consensus       287 ~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~ga~~  335 (507)
                      +.+++++|++.|+++ +.+|..|+|||++|+.++  ++++.|++.|++.
T Consensus       455 ~~~iv~lLl~~Gad~-n~~d~~g~tpl~~a~~~~--~~v~~Ll~~~a~~  500 (682)
T PHA02876        455 KLDVIEMLLDNGADV-NAINIQNQYPLLIALEYH--GIVNILLHYGAEL  500 (682)
T ss_pred             cHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHhC--CHHHHHHHCCCCC
Confidence            689999999999998 999999999999999865  6899999999876

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.5e-41  Score=344.07  Aligned_cols=288  Identities=19%  Similarity=0.159  Sum_probs=253.8

Q ss_pred             cHHHHHHHcCCChhhHHHHhCCCC-CCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCC
Q 041247            6 SGLGWVMTNGIKEAPRVLLSNGGA-NLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANC   84 (507)
Q Consensus         6 t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~   84 (507)
                      ..|+.|+..|+.+.++.|++.++. .+..+..|.||||.|+..|+.+++++|++ .+++++.. +..|.||||.|+..|+
T Consensus         3 ~~l~~ai~~gd~~~v~~ll~~~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~-~Ga~~n~~-~~~~~t~L~~A~~~~~   80 (434)
T PHA02874          3 QDLRMCIYSGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIK-HGADINHI-NTKIPHPLLTAIKIGA   80 (434)
T ss_pred             HHHHHHHhcCCHHHHHHHHHcCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCC-CCCCCCHHHHHHHcCC
Confidence            368899999999999999986544 45667889999999999999999998886 47888887 8899999999999999


Q ss_pred             HHHHHHHHHcC---------------------CchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCh
Q 041247           85 IDFVKELLKMM---------------------STEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTL  143 (507)
Q Consensus        85 ~e~v~~Ll~~~---------------------~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~t  143 (507)
                      .+++++|++++                     .|.+++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.|
T Consensus        81 ~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~-n~~d~~g~t  159 (434)
T PHA02874         81 HDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADV-NIEDDNGCY  159 (434)
T ss_pred             HHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCC-CCcCCCCCC
Confidence            99999999873                     13456778999999999999999999999999999997 889999999


Q ss_pred             HHHHHHHcCcHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCccc
Q 041247          144 PIVRAAALEQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTST  222 (507)
Q Consensus       144 pL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~  222 (507)
                      |||+|+..|+.+++++|++.++ .+..+..|.||||.|+..|+.+++++|++. +..++.++..|.||||.|+..+.   
T Consensus       160 pLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~-g~~i~~~~~~g~TpL~~A~~~~~---  235 (434)
T PHA02874        160 PIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDH-GNHIMNKCKNGFTPLHNAIIHNR---  235 (434)
T ss_pred             HHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCcCCCCCCCCHHHHHHHCCh---
Confidence            9999999999999999999998 888999999999999999999999999998 56677889999999999999875   


Q ss_pred             cccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcC-cHHHHHHHHHHCccc
Q 041247          223 NQNRRGTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRG-NVLFLLILIREYADL  301 (507)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g-~~~iv~~Ll~~~~~~  301 (507)
                                                +.+++|+ .+. +++.    .+.  .|+||||+|++.+ +.+++++|+++|+++
T Consensus       236 --------------------------~~i~~Ll-~~~-~in~----~d~--~G~TpLh~A~~~~~~~~iv~~Ll~~gad~  281 (434)
T PHA02874        236 --------------------------SAIELLI-NNA-SIND----QDI--DGSTPLHHAINPPCDIDIIDILLYHKADI  281 (434)
T ss_pred             --------------------------HHHHHHH-cCC-CCCC----cCC--CCCCHHHHHHhcCCcHHHHHHHHHCcCCC
Confidence                                      4556665 344 5543    333  4599999999976 789999999999998


Q ss_pred             ccccccCCCchHHHHHHhC-chHHHHHHHhchhhh
Q 041247          302 MRKCDENGYTIFHVAVLNR-LEELFKFIYDAKSIA  335 (507)
Q Consensus       302 ~~~~d~~g~t~L~~A~~~~-~~~iv~~Ll~~ga~~  335 (507)
                       +.+|..|+||||+|++++ +.++++.|++.+...
T Consensus       282 -n~~d~~g~TpL~~A~~~~~~~~~ik~ll~~~~~~  315 (434)
T PHA02874        282 -SIKDNKGENPIDTAFKYINKDPVIKDIIANAVLI  315 (434)
T ss_pred             -CCCCCCCCCHHHHHHHhCCccHHHHHHHHhcCch
Confidence             999999999999999987 678999999988765

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=2.1e-41  Score=349.55  Aligned_cols=311  Identities=12%  Similarity=-0.001  Sum_probs=190.8

Q ss_pred             cCCChhhHHHHhCC-CCCCCc-cccCCHHhHHHHH--cCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCC--HHH
Q 041247           14 NGIKEAPRVLLSNG-GANLSE-DSLRRLKLYRAAL--NGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANC--IDF   87 (507)
Q Consensus        14 ~g~~~~v~~Ll~~g-~~~~~~-~~~g~t~Lh~Aa~--~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~--~e~   87 (507)
                      .++.+++++|+++| ++++.. |..|.||||.|+.  .++.+++++|++ ++++++.+ |..|.||||+|++.|+  .++
T Consensus       152 ~v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe-~GADVN~k-D~~G~TPLH~Aa~~g~~~~eI  229 (764)
T PHA02716        152 GIDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCN-NGVNVNLQ-NNHLITPLHTYLITGNVCASV  229 (764)
T ss_pred             CCCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHH-cCCCCCCC-CCCCCCHHHHHHHcCCCCHHH
Confidence            35555555555555 555544 5555555555443  234555554443 24555555 5555555555555553  355


Q ss_pred             HHHHHHcCCchhhcccccCCCcHHHH-------------------------------------HHHcCcHHHHHHHHhcC
Q 041247           88 VKELLKMMSTEDLAKKNKIGCTAFFY-------------------------------------AAASGMVEIVEEMMKGN  130 (507)
Q Consensus        88 v~~Ll~~~~~~~~~~~d~~g~t~Lh~-------------------------------------A~~~g~~~iv~~Ll~~~  130 (507)
                      |++|+++  |++++.+|..|+||||+                                     |++.|+.+++++|+++|
T Consensus       230 VklLLe~--GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~G  307 (764)
T PHA02716        230 IKKIIEL--GGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPG  307 (764)
T ss_pred             HHHHHHc--CCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCC
Confidence            5555555  55555555555555554                                     34567777888888877


Q ss_pred             CCCCccCCCCCChHHHHHHH--cCcHHHHHHHHhccc-cccCCCChhhHHHHHHH--------------cCChHHHHHHH
Q 041247          131 KDIAMVPDMDGTLPIVRAAA--LEQGQMVLLLHKQTK-NSLTDDDCIELLVQLIE--------------TGFYVVALQLL  193 (507)
Q Consensus       131 ~~~~~~~~~~g~tpL~~A~~--~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~--------------~~~~~~v~~Ll  193 (507)
                      +++ +.+|..|+||||+|+.  .++.+++++|++.|+ .+.+|..|.||||.|+.              .++.++++.|+
T Consensus       308 AdI-N~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL  386 (764)
T PHA02716        308 VKL-HYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLI  386 (764)
T ss_pred             Cce-eccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHH
Confidence            775 6777778888877653  356777888887777 67777777888877654              25677777777


Q ss_pred             hcCchhhhhcccCCchHHHHHH----hcCCccc-cccccccccc--------------cccchhhh---hhhh-------
Q 041247          194 RDRPRLATKRAENEETALHVLA----RKDLTST-NQNRRGTFFQ--------------RCFNLGAE---KEEN-------  244 (507)
Q Consensus       194 ~~~~~~~~~~d~~g~t~Lh~A~----~~~~~~~-~~~~~~~~~~--------------~~~~~~~~---~~~~-------  244 (507)
                      ++ +.+++.+|..|+||||.++    ..++.++ ..++..+...              +..+....   ....       
T Consensus       387 ~~-GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~  465 (764)
T PHA02716        387 SL-GADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYT  465 (764)
T ss_pred             HC-CCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhh
Confidence            76 5667777777888887321    1233333 1122221110              00010000   0000       


Q ss_pred             --------HHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcH-----HHHHHHHHHCcccccccccCCCc
Q 041247          245 --------KQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNV-----LFLLILIREYADLMRKCDENGYT  311 (507)
Q Consensus       245 --------~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~-----~iv~~Ll~~~~~~~~~~d~~g~t  311 (507)
                              ....+++..+..++. +.+.    .+.  .|+||||+|+.+|+.     |++++|++.|+++ +.+|++|+|
T Consensus       466 ~~~~~~~~~~~~~v~~~~ii~~~-nvN~----~D~--~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADI-N~~d~~G~T  537 (764)
T PHA02716        466 DEYEPYDSTKIHDVYHCAIIERY-NNAV----CET--SGMTPLHVSIISHTNANIVMDSFVYLLSIQYNI-NIPTKNGVT  537 (764)
T ss_pred             hhhhhccccccchhhHHHHHhhc-cccc----cCC--CCCCHHHHHHHcCCccchhHHHHHHHHhCCCCC-cccCCCCCC
Confidence                    000122222222222 2222    333  459999999999887     5569999999998 999999999


Q ss_pred             hHHHHHHhCch-----HHHHHHHhchhhhhhh
Q 041247          312 IFHVAVLNRLE-----ELFKFIYDAKSIADLM  338 (507)
Q Consensus       312 ~L~~A~~~~~~-----~iv~~Ll~~ga~~~~~  338 (507)
                      |||+|+++|+.     ++|+.|+++|++++..
T Consensus       538 PLh~A~~~g~~~~~~~eIvk~LL~~ga~~~~~  569 (764)
T PHA02716        538 PLMLTMRNNRLSGHQWYIVKNILDKRPNVDIV  569 (764)
T ss_pred             HHHHHHHcCCccccHHHHHHHHHhcCCCcchH
Confidence            99999999976     9999999999988554

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=1.9e-41  Score=334.79  Aligned_cols=319  Identities=20%  Similarity=0.184  Sum_probs=277.4

Q ss_pred             CcccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHc
Q 041247            3 NILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQA   82 (507)
Q Consensus         3 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~   82 (507)
                      .|.|++|.|+.+++.      ++.-......|..+++|||+|+....++.++.+++. |++.+.. |..+.+|+|+|+..
T Consensus        60 ~gd~~~~~~~~~~y~------~~~~~~~~a~D~~~n~~l~~a~~~~~~~~i~~Lls~-gad~~~~-n~~~~aplh~A~~~  131 (929)
T KOG0510|consen   60 FGDTELHHASARNYI------LSKLAISYAKDSADNTPLHAAVEYNQGDKIQVLLSY-GADTPLR-NLNKNAPLHLAADS  131 (929)
T ss_pred             hchhHHHHHHhhcch------hhhhhhhhhhhcccCchhHHHhhcchHHHHHHHHhc-CCCCChh-hhhccCchhhcccc
Confidence            588999999999876      444445567799999999999999999999988864 8888887 99999999999999


Q ss_pred             CCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHh
Q 041247           83 NCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHK  162 (507)
Q Consensus        83 g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  162 (507)
                      |+.+..+.|+++  +++++..|+.|.||||.||..++.|..+.|++.|++. ...|.+|.+|+|.|+++|..+..+..+.
T Consensus       132 ~~~s~L~~Ll~~--~~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~-~K~~~~~~~~iH~aa~s~s~e~mEi~l~  208 (929)
T KOG0510|consen  132 GNYSCLKLLLDY--GADVNLEDENGFTPLHLAARKNKVEAKKELINKGADP-CKSDIDGNFPIHEAARSGSKECMEIFLP  208 (929)
T ss_pred             chHHHHHHHHHh--cCCccccccCCCchhhHHHhcChHHHHHHHHhcCCCC-CcccCcCCchHHHHHHhcchhhhhhhhc
Confidence            999999999999  8999999999999999999999999889999999996 7899999999999999999999999998


Q ss_pred             -----ccc-cccCCCChhhHHHHHHHcCChHHHHHHHhcC--------------chhhhhcccCCchHHHHHHhcCCccc
Q 041247          163 -----QTK-NSLTDDDCIELLVQLIETGFYVVALQLLRDR--------------PRLATKRAENEETALHVLARKDLTST  222 (507)
Q Consensus       163 -----~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~--------------~~~~~~~d~~g~t~Lh~A~~~~~~~~  222 (507)
                           +.. ++..+..+.+|||.|++.|+.+.++..|+..              .+.++..|.+|.||||+|++.|+   
T Consensus       209 ~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~---  285 (929)
T KOG0510|consen  209 EHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGG---  285 (929)
T ss_pred             cccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCC---
Confidence                 333 7788999999999999999999999999763              23445679999999999999999   


Q ss_pred             cccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHH-HCccc
Q 041247          223 NQNRRGTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIR-EYADL  301 (507)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~-~~~~~  301 (507)
                                               .+.++.|+..|+ +++.    +..++  .||||.||.+|+.+.|+-|++ .+..+
T Consensus       286 -------------------------~~svd~Ll~~Ga-~I~~----kn~d~--~spLH~AA~yg~~ntv~rLL~~~~~rl  333 (929)
T KOG0510|consen  286 -------------------------PESVDNLLGFGA-SINS----KNKDE--ESPLHFAAIYGRINTVERLLQESDTRL  333 (929)
T ss_pred             -------------------------hhHHHHHHHcCC-cccc----cCCCC--CCchHHHHHcccHHHHHHHHhCcCccc
Confidence                                     999999999999 7776    22333  999999999999999999999 66666


Q ss_pred             ccccccCCCchHHHHHHhCchHHHHHHHhchhhhhhhhccccCCCCCcCCCCCccccccchhHHHHHHHHH
Q 041247          302 MRKCDENGYTIFHVAVLNRLEELFKFIYDAKSIADLMVDSNDGEGEMFDPPLYMDIDNASSYMIVATLIVA  372 (507)
Q Consensus       302 ~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~d~~g~t~~~~~~~~~k~~~s~~vva~Liat  372 (507)
                      .+..|..|.||||+|+++||.+++++|+++|+....+ ...|.+|+|   +.|... ..+.-..|+.||+-
T Consensus       334 lne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~-~e~D~dg~T---aLH~Aa-~~g~~~av~~Li~~  399 (929)
T KOG0510|consen  334 LNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNM-SEADSDGNT---ALHLAA-KYGNTSAVQKLISH  399 (929)
T ss_pred             cccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcc-cccccCCch---hhhHHH-HhccHHHHHHHHHc
Confidence            7888999999999999999999999999999987421 155999999   444443 23445667777753

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.7e-40  Score=333.05  Aligned_cols=294  Identities=15%  Similarity=0.126  Sum_probs=255.1

Q ss_pred             CCcccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhc---------------------
Q 041247            2 DNILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKY---------------------   60 (507)
Q Consensus         2 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~---------------------   60 (507)
                      ++|.||||.|++.|+.+++++|+++|++++..+..|.||||.|+..|+.+++++|++..                     
T Consensus        33 ~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~  112 (434)
T PHA02874         33 DETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILD  112 (434)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHH
Confidence            46889999999999999999999999999999999999999999999999999888642                     


Q ss_pred             -hhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCC
Q 041247           61 -KVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDM  139 (507)
Q Consensus        61 -~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~  139 (507)
                       +.+++.+ |..|.||||+|+..|+.+++++|+++  |++++.+|..|.||||+|+..|+.+++++|+++|+++ +..|.
T Consensus       113 ~g~d~n~~-~~~g~T~Lh~A~~~~~~~~v~~Ll~~--gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~-n~~~~  188 (434)
T PHA02874        113 CGIDVNIK-DAELKTFLHYAIKKGDLESIKMLFEY--GADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYA-NVKDN  188 (434)
T ss_pred             CcCCCCCC-CCCCccHHHHHHHCCCHHHHHHHHhC--CCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCC
Confidence             3445666 88899999999999999999999999  8999999999999999999999999999999999997 88999


Q ss_pred             CCChHHHHHHHcCcHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcC
Q 041247          140 DGTLPIVRAAALEQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKD  218 (507)
Q Consensus       140 ~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~  218 (507)
                      .|.||||+|+..|+.+++++|++.++ .+..+..|.||||.|+..++ +.++.|+.  +..++.+|.+|+||||+|+..+
T Consensus       189 ~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~-~~i~~Ll~--~~~in~~d~~G~TpLh~A~~~~  265 (434)
T PHA02874        189 NGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR-SAIELLIN--NASINDQDIDGSTPLHHAINPP  265 (434)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCCh-HHHHHHHc--CCCCCCcCCCCCCHHHHHHhcC
Confidence            99999999999999999999999999 78888999999999999875 56666664  4667889999999999999876


Q ss_pred             -CccccccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcC-cHHHHHHHHH
Q 041247          219 -LTSTNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRG-NVLFLLILIR  296 (507)
Q Consensus       219 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g-~~~iv~~Ll~  296 (507)
                       +                            .+++++|+++++ +++.    .+..  |.||||.|++.+ ..++++.|++
T Consensus       266 ~~----------------------------~~iv~~Ll~~ga-d~n~----~d~~--g~TpL~~A~~~~~~~~~ik~ll~  310 (434)
T PHA02874        266 CD----------------------------IDIIDILLYHKA-DISI----KDNK--GENPIDTAFKYINKDPVIKDIIA  310 (434)
T ss_pred             Cc----------------------------HHHHHHHHHCcC-CCCC----CCCC--CCCHHHHHHHhCCccHHHHHHHH
Confidence             5                            899999999998 7776    3344  499999999987 6789999999


Q ss_pred             HCccccccccc-CCCchHHHHHHhCchHHHHHHHhchhhhhhh
Q 041247          297 EYADLMRKCDE-NGYTIFHVAVLNRLEELFKFIYDAKSIADLM  338 (507)
Q Consensus       297 ~~~~~~~~~d~-~g~t~L~~A~~~~~~~iv~~Ll~~ga~~~~~  338 (507)
                      .+... +..+. .+.+++..+....+.+..+++.+...+.+.+
T Consensus       311 ~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~c~~ei~~m  352 (434)
T PHA02874        311 NAVLI-KEADKLKDSDFLEHIEIKDNKEFSDFIKECNEEIEDM  352 (434)
T ss_pred             hcCch-hhccccchhHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence            98776 44444 3466787777777777777777665555444

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3e-40  Score=340.08  Aligned_cols=283  Identities=21%  Similarity=0.202  Sum_probs=257.2

Q ss_pred             CChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHH-----HHHcCCHHHHHH
Q 041247           16 IKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHV-----AAQANCIDFVKE   90 (507)
Q Consensus        16 ~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~-----Aa~~g~~e~v~~   90 (507)
                      ..+.++++++.+......+..+.||||.|+..|+.++++.|++. +.+++.. +..+.||||+     |+..|+.+++++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~-g~~~~~~-~~~~~t~L~~~~~~~a~~~~~~~iv~~   91 (480)
T PHA03100         14 KVKNIKYIIMEDDLNDYSYKKPVLPLYLAKEARNIDVVKILLDN-GADINSS-TKNNSTPLHYLSNIKYNLTDVKEIVKL   91 (480)
T ss_pred             HHHHHHHHHhcCccchhhhcccchhhhhhhccCCHHHHHHHHHc-CCCCCCc-cccCcCHHHHHHHHHHHhhchHHHHHH
Confidence            45678889988766667788999999999999999999988875 7888887 8889999999     999999999999


Q ss_pred             HHHcCCchhhcccccCCCcHHHHHH--HcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcC--cHHHHHHHHhccc-
Q 041247           91 LLKMMSTEDLAKKNKIGCTAFFYAA--ASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALE--QGQMVLLLHKQTK-  165 (507)
Q Consensus        91 Ll~~~~~~~~~~~d~~g~t~Lh~A~--~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g--~~~~v~~Ll~~~~-  165 (507)
                      |+++  |++++..|..|.||||+|+  ..|+.+++++|+++|+++ +..+..|.||||+|+..|  +.+++++|++.|+ 
T Consensus        92 Ll~~--ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~d  168 (480)
T PHA03100         92 LLEY--GANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANV-NIKNSDGENLLHLYLESNKIDLKILKLLIDKGVD  168 (480)
T ss_pred             HHHC--CCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCC
Confidence            9999  8999999999999999999  999999999999999997 889999999999999999  9999999999999 


Q ss_pred             cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCC------chHHHHHHhcCCccccccccccccccccchhh
Q 041247          166 NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENE------ETALHVLARKDLTSTNQNRRGTFFQRCFNLGA  239 (507)
Q Consensus       166 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g------~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~  239 (507)
                      .+..+..|.||||.|+..|+.++++.|++. +.+++..+..|      .||||.|+..++..                  
T Consensus       169 in~~d~~g~tpL~~A~~~~~~~iv~~Ll~~-ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~------------------  229 (480)
T PHA03100        169 INAKNRYGYTPLHIAVEKGNIDVIKFLLDN-GADINAGDIETLLFTIFETPLHIAACYNEIT------------------  229 (480)
T ss_pred             cccccCCCCCHHHHHHHhCCHHHHHHHHHc-CCCccCCCCCCCcHHHHHhHHHHHHHhCcCc------------------
Confidence            888888999999999999999999999998 56677788888      89999999988622                  


Q ss_pred             hhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCcccccccccCCCchHHHHHHh
Q 041247          240 EKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIFHVAVLN  319 (507)
Q Consensus       240 ~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~  319 (507)
                              .+++++|+++|+ +++.    .+..  |.||||+|+..|+.+++++|++.|+++ +.+|..|+||+|+|+++
T Consensus       230 --------~~iv~~Ll~~g~-din~----~d~~--g~TpL~~A~~~~~~~iv~~Ll~~gad~-n~~d~~g~tpl~~A~~~  293 (480)
T PHA03100        230 --------LEVVNYLLSYGV-PINI----KDVY--GFTPLHYAVYNNNPEFVKYLLDLGANP-NLVNKYGDTPLHIAILN  293 (480)
T ss_pred             --------HHHHHHHHHcCC-CCCC----CCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHh
Confidence                    789999999988 7765    3334  499999999999999999999999998 99999999999999999


Q ss_pred             CchHHHHHHHhchhhhhhh
Q 041247          320 RLEELFKFIYDAKSIADLM  338 (507)
Q Consensus       320 ~~~~iv~~Ll~~ga~~~~~  338 (507)
                      ++.+++++|+++|++.+.+
T Consensus       294 ~~~~iv~~Ll~~g~~i~~i  312 (480)
T PHA03100        294 NNKEIFKLLLNNGPSIKTI  312 (480)
T ss_pred             CCHHHHHHHHhcCCCHHHH
Confidence            9999999999999988653

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=6.5e-40  Score=341.22  Aligned_cols=332  Identities=14%  Similarity=0.026  Sum_probs=257.9

Q ss_pred             CcccHHHHHHHc---CCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHH----HHHHHhhchhccccccCCCCCcH
Q 041247            3 NILSGLGWVMTN---GIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAV----AKDIYDKYKVEIGQEITNLGNTA   75 (507)
Q Consensus         3 ~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~----v~~ll~~~~~~i~~~~~~~g~t~   75 (507)
                      +|.||||+|+..   |+.+++++|+++|++++..+..|.||||+|+..|+.++    ++.|++..+. .+.. +  ..++
T Consensus        31 ~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~-~n~~-~--~~~~  106 (661)
T PHA02917         31 FKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGY-SNIN-D--FNIF  106 (661)
T ss_pred             CCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCC-CCCC-C--cchH
Confidence            689999997665   88999999999999999999999999999999999654    4556554332 2222 2  3477


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHH--HcCcHHHHHHHHhcCCCCCccCCC---CC---------
Q 041247           76 LHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAA--ASGMVEIVEEMMKGNKDIAMVPDM---DG---------  141 (507)
Q Consensus        76 Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~--~~g~~~iv~~Ll~~~~~~~~~~~~---~g---------  141 (507)
                      +|.|+..|+.|+|++|+++  |++++.+|..|+||||.|+  ..|+.+++++|+++|+++ +.+|.   .|         
T Consensus       107 ~~~a~~~~~~e~vk~Ll~~--Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~v-n~~d~~~~~g~~~~~~~~~  183 (661)
T PHA02917        107 SYMKSKNVDVDLIKVLVEH--GFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSV-LYEDEDDEYGYAYDDYQPR  183 (661)
T ss_pred             HHHHhhcCCHHHHHHHHHc--CCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCc-ccccccccccccccccccc
Confidence            8889999999999999999  8999999999999999654  578999999999999997 44433   34         


Q ss_pred             --ChHHHHHHH-----------cCcHHHHHHHHhccc-cccCCCChhhHHHHHHHcCCh--HHHHHHHhcCchhh---hh
Q 041247          142 --TLPIVRAAA-----------LEQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFY--VVALQLLRDRPRLA---TK  202 (507)
Q Consensus       142 --~tpL~~A~~-----------~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~--~~v~~Ll~~~~~~~---~~  202 (507)
                        .||||+|+.           .++.+++++|++.|+ .+.+|.+|.||||.|+.+|+.  ++++.|++. .+..   ..
T Consensus       184 ~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~g-~d~~~~~~~  262 (661)
T PHA02917        184 NCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMKG-IDNTAYSYI  262 (661)
T ss_pred             ccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHhC-Ccccccccc
Confidence              599999986           468999999999999 999999999999999999985  799999752 2221   24


Q ss_pred             cccCCchHHHHHHhcC---------Cccc-cccccccccccccch--------------hhh-----hh---------hh
Q 041247          203 RAENEETALHVLARKD---------LTST-NQNRRGTFFQRCFNL--------------GAE-----KE---------EN  244 (507)
Q Consensus       203 ~d~~g~t~Lh~A~~~~---------~~~~-~~~~~~~~~~~~~~~--------------~~~-----~~---------~~  244 (507)
                      .|..|.+|+|+|++-+         +.++ ..++..|...+..+.              +.+     ..         ..
T Consensus       263 ~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g  342 (661)
T PHA02917        263 DDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSDVLQHILIEYMTFG  342 (661)
T ss_pred             cCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhchHHHHHHHHHHHHcC
Confidence            5677889999998422         2222 445566654321111              110     00         00


Q ss_pred             HHHHHHHHHHHHHHhhccchhhH------------------------HhhhhcCCChHHHHHHHcC--------------
Q 041247          245 KQALELVESLWTEVVLSSESVSE------------------------ISKLIARPTRLIFDAAKRG--------------  286 (507)
Q Consensus       245 ~~~~~~v~~Ll~~~~~~~~~~~~------------------------~~~~~g~g~t~Lh~A~~~g--------------  286 (507)
                      ....++++.|++.|+ +++....                        ....+..|+||||.|++.+              
T Consensus       343 ~~~~~~v~~Ll~~GA-dvn~~~~~g~~~~~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~~~~~~~~  421 (661)
T PHA02917        343 DIDIPLVECMLEYGA-VVNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNFYTYTYKKG  421 (661)
T ss_pred             CCcHHHHHHHHHcCC-CCCCCCccccchhhcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccchhhhhhhhhhc
Confidence            012568999999998 7665310                        0111223699999998543              


Q ss_pred             ---------cHHHHHHHHHHCcccccccccCCCchHHHHHHhCchHHHHHHHhchhhhhhhhccccCCCCC
Q 041247          287 ---------NVLFLLILIREYADLMRKCDENGYTIFHVAVLNRLEELFKFIYDAKSIADLMVDSNDGEGEM  348 (507)
Q Consensus       287 ---------~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~d~~g~t  348 (507)
                               ..++++.|+++|+++ +.+|..|+||||+|+..++.+++++|+++|+++    +.+|..|+|
T Consensus       422 ~~~~~~~~~~~~~v~~Ll~~GAdI-N~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~GAdi----n~~d~~G~T  487 (661)
T PHA02917        422 LCDMSYACPILSTINICLPYLKDI-NMIDKRGETLLHKAVRYNKQSLVSLLLESGSDV----NIRSNNGYT  487 (661)
T ss_pred             cchhhhhhhhHHHHHHHHHCCCCC-CCCCCCCcCHHHHHHHcCCHHHHHHHHHCcCCC----CCCCCCCCC
Confidence                     357889999999998 999999999999999999999999999999998    889999999

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.5e-39  Score=333.27  Aligned_cols=261  Identities=16%  Similarity=0.075  Sum_probs=243.1

Q ss_pred             CcccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHH-----HHHcCCHHHHHHHHhhchhccccccCCCCCcHHH
Q 041247            3 NILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYR-----AALNGDWAVAKDIYDKYKVEIGQEITNLGNTALH   77 (507)
Q Consensus         3 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~-----Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh   77 (507)
                      ++.||||.|+..|+.+++++|+++|++++..+..+.||||.     |+..|+.++++.|++. +++++.. |..|.||||
T Consensus        34 ~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~-ga~i~~~-d~~g~tpL~  111 (480)
T PHA03100         34 KPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEY-GANVNAP-DNNGITPLL  111 (480)
T ss_pred             ccchhhhhhhccCCHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHC-CCCCCCC-CCCCCchhh
Confidence            46799999999999999999999999999999999999999     9999999999988864 7888877 999999999


Q ss_pred             HHH--HcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcC--cHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCc
Q 041247           78 VAA--QANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASG--MVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQ  153 (507)
Q Consensus        78 ~Aa--~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g--~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~  153 (507)
                      +|+  ..|+.+++++|+++  |++++..|..|.||||+|+..|  +.+++++|+++|+++ +.+|..|.||||+|+..|+
T Consensus       112 ~A~~~~~~~~~iv~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~di-n~~d~~g~tpL~~A~~~~~  188 (480)
T PHA03100        112 YAISKKSNSYSIVEYLLDN--GANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDI-NAKNRYGYTPLHIAVEKGN  188 (480)
T ss_pred             HHHhcccChHHHHHHHHHc--CCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCc-ccccCCCCCHHHHHHHhCC
Confidence            999  99999999999999  8999999999999999999999  999999999999997 8889999999999999999


Q ss_pred             HHHHHHHHhccc-cccCCCCh------hhHHHHHHHcCC--hHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCccccc
Q 041247          154 GQMVLLLHKQTK-NSLTDDDC------IELLVQLIETGF--YVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQ  224 (507)
Q Consensus       154 ~~~v~~Ll~~~~-~~~~~~~g------~t~L~~A~~~~~--~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~  224 (507)
                      .+++++|++.|+ .+..+..|      .||+|.|+..++  .++++.|++. +.+++.+|..|.||||+|+..++     
T Consensus       189 ~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~-g~din~~d~~g~TpL~~A~~~~~-----  262 (480)
T PHA03100        189 IDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSY-GVPINIKDVYGFTPLHYAVYNNN-----  262 (480)
T ss_pred             HHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCC-----
Confidence            999999999999 77777788      899999999999  9999999998 67788999999999999999999     


Q ss_pred             cccccccccccchhhhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCcccccc
Q 041247          225 NRRGTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRK  304 (507)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~  304 (507)
                                             .+++++|+++|+ +++.    .+..|  .||+|+|+++++.+++++|+++|+++ +.
T Consensus       263 -----------------------~~iv~~Ll~~ga-d~n~----~d~~g--~tpl~~A~~~~~~~iv~~Ll~~g~~i-~~  311 (480)
T PHA03100        263 -----------------------PEFVKYLLDLGA-NPNL----VNKYG--DTPLHIAILNNNKEIFKLLLNNGPSI-KT  311 (480)
T ss_pred             -----------------------HHHHHHHHHcCC-CCCc----cCCCC--CcHHHHHHHhCCHHHHHHHHhcCCCH-HH
Confidence                                   999999999998 7765    34444  99999999999999999999999987 44


Q ss_pred             c
Q 041247          305 C  305 (507)
Q Consensus       305 ~  305 (507)
                      .
T Consensus       312 i  312 (480)
T PHA03100        312 I  312 (480)
T ss_pred             H
Confidence            3

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=5.9e-39  Score=329.85  Aligned_cols=263  Identities=15%  Similarity=0.068  Sum_probs=237.7

Q ss_pred             CcccHHHHHHHcC---CChhhHHHHhCCCCCCCccccCCHHhHHHHHcC-CHHHHHHHHhhchhccccccCCCCCcHHHH
Q 041247            3 NILSGLGWVMTNG---IKEAPRVLLSNGGANLSEDSLRRLKLYRAALNG-DWAVAKDIYDKYKVEIGQEITNLGNTALHV   78 (507)
Q Consensus         3 ~g~t~L~~A~~~g---~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g-~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~   78 (507)
                      .|.||||+|+..|   +.+++++|+++|++++..+..|.||||+|+..| +.++++.|++ ++++++.+ |..|+||||+
T Consensus        46 ~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~-~ga~in~~-~~~g~tpLh~  123 (471)
T PHA03095         46 YGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIK-AGADVNAK-DKVGRTPLHV  123 (471)
T ss_pred             CCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHH-cCCCCCCC-CCCCCCHHHH
Confidence            5789999999999   999999999999999999999999999999999 5999997775 58999998 9999999999


Q ss_pred             HH--HcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcC--cHHHHHHHHhcCCCCCccCCCCCChHHHHHHHc--C
Q 041247           79 AA--QANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASG--MVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAAL--E  152 (507)
Q Consensus        79 Aa--~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g--~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~--g  152 (507)
                      |+  ..++.+++++|+++  |++++.+|..|.||||+|+..+  +.+++++|+++|+++ ...|..|.||||.|+..  +
T Consensus       124 a~~~~~~~~~iv~~Ll~~--gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~-~~~d~~g~t~Lh~~~~~~~~  200 (471)
T PHA03095        124 YLSGFNINPKVIRLLLRK--GADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADV-YAVDDRFRSLLHHHLQSFKP  200 (471)
T ss_pred             HhhCCcCCHHHHHHHHHc--CCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHHCCC
Confidence            99  55689999999999  8999999999999999998866  689999999999997 55699999999999875  7


Q ss_pred             cHHHHHHHHhccc-cccCCCChhhHHHHHHHcCCh--HHHHHHHhcCchhhhhcccCCchHHHHHHhcCCcccccccccc
Q 041247          153 QGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFY--VVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGT  229 (507)
Q Consensus       153 ~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~--~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~  229 (507)
                      +.++++.|++.|. ++.+|..|.||||.|+..|+.  .+++.+++. +.+++.+|..|+||||+|+..|+          
T Consensus       201 ~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~-g~din~~d~~g~TpLh~A~~~~~----------  269 (471)
T PHA03095        201 RARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIA-GISINARNRYGQTPLHYAAVFNN----------  269 (471)
T ss_pred             cHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCC----------
Confidence            7899999999999 899999999999999999875  577778877 77889999999999999999999          


Q ss_pred             ccccccchhhhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCccccccccc
Q 041247          230 FFQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDE  307 (507)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~  307 (507)
                                        .+++++|++.|+ +++.    .+.+|  +||||.|+++|+.++++.|++.+++. +..+.
T Consensus       270 ------------------~~~v~~LL~~ga-d~n~----~~~~g--~tpl~~A~~~~~~~~v~~LL~~~~~~-~~~~~  321 (471)
T PHA03095        270 ------------------PRACRRLIALGA-DINA----VSSDG--NTPLSLMVRNNNGRAVRAALAKNPSA-ETVAA  321 (471)
T ss_pred             ------------------HHHHHHHHHcCC-CCcc----cCCCC--CCHHHHHHHhCCHHHHHHHHHhCCCH-HHHHH
Confidence                              999999999998 7775    34444  99999999999999999999999997 44433

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.1e-38  Score=323.04  Aligned_cols=335  Identities=11%  Similarity=-0.010  Sum_probs=240.2

Q ss_pred             CCcccHHHHHHHcC---CChhhHHHHhCCCCCCCccccCCHHhHHHHHcC--CHHHHHHHHhhc-hhccccccCCCCCcH
Q 041247            2 DNILSGLGWVMTNG---IKEAPRVLLSNGGANLSEDSLRRLKLYRAALNG--DWAVAKDIYDKY-KVEIGQEITNLGNTA   75 (507)
Q Consensus         2 ~~g~t~L~~A~~~g---~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g--~~~~v~~ll~~~-~~~i~~~~~~~g~t~   75 (507)
                      .+|.||||+|+..|   +.|+|++|+++|++++.+|..|+||||+|+..|  +.|+++.|++.. +++.+.. +..+++|
T Consensus        39 ~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~-~~~~d~~  117 (672)
T PHA02730         39 RRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELT-SNINDFD  117 (672)
T ss_pred             CCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccc-cccCCch
Confidence            36999999999997   589999999999999999999999999999977  799999888652 3444555 6668888


Q ss_pred             HHHHHH--cCCHHHHHHHHHcCCchhhccccc-----CCCcHHHHHHHcCcHHHHHHHHhcCCCCC------ccCCCCCC
Q 041247           76 LHVAAQ--ANCIDFVKELLKMMSTEDLAKKNK-----IGCTAFFYAAASGMVEIVEEMMKGNKDIA------MVPDMDGT  142 (507)
Q Consensus        76 Lh~Aa~--~g~~e~v~~Ll~~~~~~~~~~~d~-----~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~------~~~~~~g~  142 (507)
                      ||.++.  .++.|+|++|++.+ +.+++..++     .|.+|++++...++.|+|++|+++|+++.      ...+..+.
T Consensus       118 l~~y~~s~n~~~~~vk~Li~~~-~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c  196 (672)
T PHA02730        118 LYSYMSSDNIDLRLLKYLIVDK-RIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDRC  196 (672)
T ss_pred             HHHHHHhcCCcHHHHHHHHHhc-CCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCCcc
Confidence            888888  78889999999743 566665532     67888888888888888888888888862      11333333


Q ss_pred             -hHHHHH------HHcCcHHHHHHHHhccc-cccCCCChhhHHHH--HHHcCChHHHHHHHh------------------
Q 041247          143 -LPIVRA------AALEQGQMVLLLHKQTK-NSLTDDDCIELLVQ--LIETGFYVVALQLLR------------------  194 (507)
Q Consensus       143 -tpL~~A------~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~--A~~~~~~~~v~~Ll~------------------  194 (507)
                       |.||++      ..+++.|++++|+++|+ .+.+|.+|+||||+  +...++.|+++.|++                  
T Consensus       197 ~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~  276 (672)
T PHA02730        197 KNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRG  276 (672)
T ss_pred             chhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhh
Confidence             344422      34467888888888888 78888888888874  444556888888887                  


Q ss_pred             -------------cCchhhhh--------------------cccCCch---------------------HHHHHHhcCC-
Q 041247          195 -------------DRPRLATK--------------------RAENEET---------------------ALHVLARKDL-  219 (507)
Q Consensus       195 -------------~~~~~~~~--------------------~d~~g~t---------------------~Lh~A~~~~~-  219 (507)
                                   ..+.+...                    .|..|.+                     .||.=.+.++ 
T Consensus       277 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~  356 (672)
T PHA02730        277 VLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDM  356 (672)
T ss_pred             hHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCc
Confidence                         01232222                    4455543                     4555555442 


Q ss_pred             ccc---ccccccccccc-----ccchhhh-hhh-hHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHH---HHHcC
Q 041247          220 TST---NQNRRGTFFQR-----CFNLGAE-KEE-NKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFD---AAKRG  286 (507)
Q Consensus       220 ~~~---~~~~~~~~~~~-----~~~~~~~-~~~-~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~---A~~~g  286 (507)
                      ...   ..++..|.+.+     .+|+..+ ... +.-..+++++|+++|+ +.+.  +..+.+|  .||||.   |...+
T Consensus       357 v~ieIvelLIs~GAdIN~k~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga-~~dI--N~kd~~G--~T~Lh~~i~a~~~n  431 (672)
T PHA02730        357 VSIPILRCMLDNGATMDKTTDNNYPLHDYFVNNNNIVDVNVVRFIVENNG-HMAI--NHVSNNG--RLCMYGLILSRFNN  431 (672)
T ss_pred             CcHHHHHHHHHCCCCCCcCCCCCcHHHHHHHHcCCcchHHHHHHHHHcCC-Cccc--cccccCC--CchHhHHHHHHhcc
Confidence            222   34444454433     3333332 111 1112799999999886 4333  2344444  999984   33332


Q ss_pred             ---------cHHHHHHHHHHCcccccccccCCCchHHHHHHhCchHHHHHHHhchhhhhhhhccccC-CCCC
Q 041247          287 ---------NVLFLLILIREYADLMRKCDENGYTIFHVAVLNRLEELFKFIYDAKSIADLMVDSNDG-EGEM  348 (507)
Q Consensus       287 ---------~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~d~-~g~t  348 (507)
                               ..+++++|+++|+++ +.+|..|+||||+|+..++.+++++|+++|+++    +.+|. .|+|
T Consensus       432 ~~~~~~e~~~~~ivk~LIs~GADI-NakD~~G~TPLh~Aa~~~~~eive~LI~~GAdI----N~~d~~~g~T  498 (672)
T PHA02730        432 CGYHCYETILIDVFDILSKYMDDI-DMIDNENKTLLYYAVDVNNIQFARRLLEYGASV----NTTSRSIINT  498 (672)
T ss_pred             ccccccchhHHHHHHHHHhcccch-hccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCC----CCCCCcCCcC
Confidence                     236799999999998 999999999999999999999999999999998    78886 4787

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=2.2e-38  Score=327.18  Aligned_cols=293  Identities=14%  Similarity=0.071  Sum_probs=225.1

Q ss_pred             HcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHH--cCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCc--HH
Q 041247           46 LNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQ--ANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGM--VE  121 (507)
Q Consensus        46 ~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~--~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~--~~  121 (507)
                      +.++.+++++|++...++++.+.|..|.||||.|+.  +++.+++++|+++  |++++.+|..|+||||+|+..|+  .+
T Consensus       151 ~~v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~--GADVN~kD~~G~TPLH~Aa~~g~~~~e  228 (764)
T PHA02716        151 RGIDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNN--GVNVNLQNNHLITPLHTYLITGNVCAS  228 (764)
T ss_pred             cCCCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHcCCCCHH
Confidence            469999999999763388887657889999999875  4678999999999  89999999999999999999995  59


Q ss_pred             HHHHHHhcCCCCCccCCCCCChHHHHH-------------------------------------HHcCcHHHHHHHHhcc
Q 041247          122 IVEEMMKGNKDIAMVPDMDGTLPIVRA-------------------------------------AALEQGQMVLLLHKQT  164 (507)
Q Consensus       122 iv~~Ll~~~~~~~~~~~~~g~tpL~~A-------------------------------------~~~g~~~~v~~Ll~~~  164 (507)
                      ++++|+++|+++ +.+|..|.||||.|                                     ++.|+.+++++|++.|
T Consensus       229 IVklLLe~GADV-N~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~G  307 (764)
T PHA02716        229 VIKKIIELGGDM-DMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPG  307 (764)
T ss_pred             HHHHHHHcCCCC-CCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCC
Confidence            999999999997 89999999999965                                     4568899999999999


Q ss_pred             c-cccCCCChhhHHHHHHH--cCChHHHHHHHhcCchhhhhcccCCchHHHHHHhc--------------CCccc-cccc
Q 041247          165 K-NSLTDDDCIELLVQLIE--TGFYVVALQLLRDRPRLATKRAENEETALHVLARK--------------DLTST-NQNR  226 (507)
Q Consensus       165 ~-~~~~~~~g~t~L~~A~~--~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~--------------~~~~~-~~~~  226 (507)
                      + .+.+|.+|+||||.|+.  .++.++++.|++. +.+++.+|..|+||||+|+..              ++.++ ..++
T Consensus       308 AdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~-GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL  386 (764)
T PHA02716        308 VKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEY-GNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLI  386 (764)
T ss_pred             CceeccCCCCCCHHHHHHHHhCCCchHHHHHHHc-CCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHH
Confidence            9 88899999999999764  4578999999988 678899999999999998752              34444 4566


Q ss_pred             ccccccc------ccchhhh--hhhhHHHHHHHHHHHHHHhhccchhhH----HhhhhcCCChHHHHHHHcCcHH-----
Q 041247          227 RGTFFQR------CFNLGAE--KEENKQALELVESLWTEVVLSSESVSE----ISKLIARPTRLIFDAAKRGNVL-----  289 (507)
Q Consensus       227 ~~~~~~~------~~~~~~~--~~~~~~~~~~v~~Ll~~~~~~~~~~~~----~~~~~g~g~t~Lh~A~~~g~~~-----  289 (507)
                      ..|++.+      .+|+...  ........+++++|++.+. .......    .....+....++|.++..++.+     
T Consensus       387 ~~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~-~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~  465 (764)
T PHA02716        387 SLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKV-LNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYT  465 (764)
T ss_pred             HCCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcc-hhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhh
Confidence            6666653      5666522  2333345899999998654 2211100    0011121122255555544433     


Q ss_pred             -------------HHHHHHHHCcccccccccCCCchHHHHHHhCchH-----HHHHHHhchhhhhhhhccccCCCCC
Q 041247          290 -------------FLLILIREYADLMRKCDENGYTIFHVAVLNRLEE-----LFKFIYDAKSIADLMVDSNDGEGEM  348 (507)
Q Consensus       290 -------------iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~-----iv~~Ll~~ga~~~~~~~~~d~~g~t  348 (507)
                                   ++..++..+.+. +..|..|+||||+|+..|+.+     ++++|++.|+++    +.+|++|+|
T Consensus       466 ~~~~~~~~~~~~~v~~~~ii~~~nv-N~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADI----N~~d~~G~T  537 (764)
T PHA02716        466 DEYEPYDSTKIHDVYHCAIIERYNN-AVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYNI----NIPTKNGVT  537 (764)
T ss_pred             hhhhhccccccchhhHHHHHhhccc-cccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCCC----cccCCCCCC
Confidence                         233334445555 778999999999999998874     559999999998    889999999

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.1e-38  Score=324.72  Aligned_cols=283  Identities=13%  Similarity=0.054  Sum_probs=238.0

Q ss_pred             cccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcC
Q 041247            4 ILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQAN   83 (507)
Q Consensus         4 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g   83 (507)
                      +.||||+|+..|+.++|++|+++|++++..|..|.||||+|+..|+.++++.+++... ...   ...+.+|+|.|+..|
T Consensus        37 ~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~-~~~---~~~~~~~l~~a~~~~  112 (477)
T PHA02878         37 PFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSIN-KCS---VFYTLVAIKDAFNNR  112 (477)
T ss_pred             CcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHh-ccc---cccchhhHHHHHHcC
Confidence            5699999999999999999999999999999999999999999999999999987632 221   245789999999999


Q ss_pred             CHHHHHHHHHcCCchhhcccccCCCcHHHHHHHc--CcHHHHHHHHhcCCCCCccCCCC-CChHHHHHHHcCcHHHHHHH
Q 041247           84 CIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAAS--GMVEIVEEMMKGNKDIAMVPDMD-GTLPIVRAAALEQGQMVLLL  160 (507)
Q Consensus        84 ~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~--g~~~iv~~Ll~~~~~~~~~~~~~-g~tpL~~A~~~g~~~~v~~L  160 (507)
                      +.++++.|+...  .+....  .....+......  .+.+++++|+++|+++ +.++.. |.||||+|+..|+.+++++|
T Consensus       113 ~~ei~~~Ll~~~--~~~~~~--~~~~~~~~~~~~~~~~~~iv~~Ll~~gadi-n~~~~~~g~tpLh~A~~~~~~~iv~~L  187 (477)
T PHA02878        113 NVEIFKIILTNR--YKNIQT--IDLVYIDKKSKDDIIEAEITKLLLSYGADI-NMKDRHKGNTALHYATENKDQRLTELL  187 (477)
T ss_pred             CHHHHHHHHhCc--ccCccc--CcHHHHhhccchhhHHHHHHHHHHHcCCCC-CccCCCCCCCHHHHHHhCCCHHHHHHH
Confidence            999999999872  221100  001111111112  2356999999999997 788888 99999999999999999999


Q ss_pred             Hhccc-cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhc-CCccccccccccccccccchh
Q 041247          161 HKQTK-NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARK-DLTSTNQNRRGTFFQRCFNLG  238 (507)
Q Consensus       161 l~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~-~~~~~~~~~~~~~~~~~~~~~  238 (507)
                      ++.|+ .+..|..|.||||.|++.++.++++.|++. +.+++.+|..|+||||+|+.. ++                   
T Consensus       188 l~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~-ga~in~~d~~g~TpLh~A~~~~~~-------------------  247 (477)
T PHA02878        188 LSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLEN-GASTDARDKCGNTPLHISVGYCKD-------------------  247 (477)
T ss_pred             HHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhcCC-------------------
Confidence            99999 888999999999999999999999999988 677889999999999999976 56                   


Q ss_pred             hhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCcccccccccCCCchHHHHHH
Q 041247          239 AEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIFHVAVL  318 (507)
Q Consensus       239 ~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~  318 (507)
                               .++++.|+++|+ +++.    .+ +..|.||||.|  .++.+++++|+++|+|+ +..|..|+||||+|++
T Consensus       248 ---------~~iv~~Ll~~ga-dvn~----~~-~~~g~TpLh~A--~~~~~~v~~Ll~~gadi-n~~d~~g~TpL~~A~~  309 (477)
T PHA02878        248 ---------YDILKLLLEHGV-DVNA----KS-YILGLTALHSS--IKSERKLKLLLEYGADI-NSLNSYKLTPLSSAVK  309 (477)
T ss_pred             ---------HHHHHHHHHcCC-CCCc----cC-CCCCCCHHHHH--ccCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHH
Confidence                     899999999998 8775    11 12349999999  57789999999999998 9999999999999998


Q ss_pred             hC-chHHHHHHHhchh
Q 041247          319 NR-LEELFKFIYDAKS  333 (507)
Q Consensus       319 ~~-~~~iv~~Ll~~ga  333 (507)
                      .+ ..+++++|+..+.
T Consensus       310 ~~~~~~~~~~li~~~~  325 (477)
T PHA02878        310 QYLCINIGRILISNIC  325 (477)
T ss_pred             HcCccchHHHHHHHHH
Confidence            54 5678888887764

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=8.9e-38  Score=321.04  Aligned_cols=285  Identities=13%  Similarity=0.065  Sum_probs=241.5

Q ss_pred             cCCChhhHHHHhCCCCCCCccccCCHHhHHHHHc--CCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcC------CH
Q 041247           14 NGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALN--GDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQAN------CI   85 (507)
Q Consensus        14 ~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~--g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g------~~   85 (507)
                      ..+.+++++|+++|++++.. ..|.||||.++..  ++.++++.|++ +|++++.+ + .+.||||.|+.++      +.
T Consensus        13 ~~~~~~v~~LL~~GadvN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~-~GAdvn~~-~-~~~tpL~~a~~~~~~~~~~~~   88 (494)
T PHA02989         13 TVDKNALEFLLRTGFDVNEE-YRGNSILLLYLKRKDVKIKIVKLLID-NGADVNYK-G-YIETPLCAVLRNREITSNKIK   88 (494)
T ss_pred             cCcHHHHHHHHHcCCCcccc-cCCCCHHHHHHhcCCCChHHHHHHHH-cCCCccCC-C-CCCCcHHHHHhccCcchhhHH
Confidence            47899999999999999887 6789999876654  36899998886 58999987 5 5799999998764      47


Q ss_pred             HHHHHHHHcCCchhhcccccCCCcHHHHHHHc---CcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHc--CcHHHHHHH
Q 041247           86 DFVKELLKMMSTEDLAKKNKIGCTAFFYAAAS---GMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAAL--EQGQMVLLL  160 (507)
Q Consensus        86 e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~---g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~--g~~~~v~~L  160 (507)
                      +++++|+++  |++++.+|..|.||||.|+..   |+.+++++|+++|+++.+.+|..|.||||+|+..  ++.+++++|
T Consensus        89 ~iv~~Ll~~--Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~L  166 (494)
T PHA02989         89 KIVKLLLKF--GADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKIL  166 (494)
T ss_pred             HHHHHHHHC--CCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHH
Confidence            899999999  899999999999999988755   6899999999999996468899999999998764  688999999


Q ss_pred             Hhccc-ccc-CCCChhhHHHHHHHcC----ChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCccccccccccccccc
Q 041247          161 HKQTK-NSL-TDDDCIELLVQLIETG----FYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRC  234 (507)
Q Consensus       161 l~~~~-~~~-~~~~g~t~L~~A~~~~----~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~  234 (507)
                      ++.|+ ++. .+..|.||||.|+..+    +.+++++|++. +.+++.+|..|.||||.++..+..     .        
T Consensus       167 l~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~-Ga~vn~~~~~~~t~l~~~~~~~~~-----~--------  232 (494)
T PHA02989        167 LSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKK-GVNIETNNNGSESVLESFLDNNKI-----L--------  232 (494)
T ss_pred             HHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhC-CCCccccCCccccHHHHHHHhchh-----h--------
Confidence            99999 555 6789999999998764    89999999998 677888888999999988765530     0        


Q ss_pred             cchhhhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCcccccccccCCCchHH
Q 041247          235 FNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIFH  314 (507)
Q Consensus       235 ~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~  314 (507)
                               .....++++++.+ ++ +++.    .|..  |+||||+|++.|+.+++++|++.|+|+ +.+|..|+||||
T Consensus       233 ---------~~~~~~il~~l~~-~a-dvn~----~d~~--G~TpL~~Aa~~~~~~~v~~LL~~Gadi-n~~d~~G~TpL~  294 (494)
T PHA02989        233 ---------SKKEFKVLNFILK-YI-KINK----KDKK--GFNPLLISAKVDNYEAFNYLLKLGDDI-YNVSKDGDTVLT  294 (494)
T ss_pred             ---------cccchHHHHHHHh-CC-CCCC----CCCC--CCCHHHHHHHhcCHHHHHHHHHcCCCc-cccCCCCCCHHH
Confidence                     0011677777665 45 6665    3444  499999999999999999999999998 999999999999


Q ss_pred             HHHHhCchHHHHHHHhchhhhh
Q 041247          315 VAVLNRLEELFKFIYDAKSIAD  336 (507)
Q Consensus       315 ~A~~~~~~~iv~~Ll~~ga~~~  336 (507)
                      +|+++++.++++.|++.+....
T Consensus       295 ~A~~~~~~~iv~~LL~~~p~~~  316 (494)
T PHA02989        295 YAIKHGNIDMLNRILQLKPGKY  316 (494)
T ss_pred             HHHHcCCHHHHHHHHhcCCChH
Confidence            9999999999999999886553

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=5.9e-37  Score=286.86  Aligned_cols=196  Identities=18%  Similarity=0.135  Sum_probs=140.0

Q ss_pred             cCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHH
Q 041247           14 NGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLK   93 (507)
Q Consensus        14 ~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~   93 (507)
                      .++.+++++|+++|+  ...|.+|+||||+|+..|+.++++.|++. +++++..   +|+||||+|+..|+.+++++|++
T Consensus         9 ~~~~~~~~~Lis~~a--~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~-ga~~n~~---d~~TpLh~Aa~~g~~eiV~lLL~   82 (284)
T PHA02791          9 WKSKQLKSFLSSKDA--FKADVHGHSALYYAIADNNVRLVCTLLNA-GALKNLL---ENEFPLHQAATLEDTKIVKILLF   82 (284)
T ss_pred             cCHHHHHHHHHhCCC--CCCCCCCCcHHHHHHHcCCHHHHHHHHHC-cCCCcCC---CCCCHHHHHHHCCCHHHHHHHHH
Confidence            356778888888775  34677788888888888888888876654 5555544   36788888888888888888888


Q ss_pred             cCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCC-ChHHHHHHHcCcHHHHHHHHhccccccCCCC
Q 041247           94 MMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDG-TLPIVRAAALEQGQMVLLLHKQTKNSLTDDD  172 (507)
Q Consensus        94 ~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g-~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~  172 (507)
                      .  |++++.+|..|+||||+|+..|+.+++++|+++|+++ +.++..| .||||+|+..|+.+++++|++.++.......
T Consensus        83 ~--Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadi-n~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~d~~~  159 (284)
T PHA02791         83 S--GMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAI  159 (284)
T ss_pred             C--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCccccccc
Confidence            7  7888888888888888888888888888888888886 6667666 4788888888888888888876541111123


Q ss_pred             hhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchH-HHHHHhcCC
Q 041247          173 CIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETA-LHVLARKDL  219 (507)
Q Consensus       173 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~-Lh~A~~~~~  219 (507)
                      |.||||.|+..|+.++++.|++. +.+++.+|..|.|| ||+|+..|+
T Consensus       160 g~TpLh~Aa~~g~~eiv~lLL~~-gAd~n~~d~~g~t~~L~~Aa~~~~  206 (284)
T PHA02791        160 LLSCIHITIKNGHVDMMILLLDY-MTSTNTNNSLLFIPDIKLAIDNKD  206 (284)
T ss_pred             CccHHHHHHHcCCHHHHHHHHHC-CCCCCcccCCCCChHHHHHHHcCC
Confidence            56666666666666666666665 44455555555554 666666665

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.4e-36  Score=284.27  Aligned_cols=234  Identities=14%  Similarity=0.050  Sum_probs=203.7

Q ss_pred             cCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHH
Q 041247           47 NGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEM  126 (507)
Q Consensus        47 ~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~L  126 (507)
                      .++.++++.|++ +++  +.+ |.+|+||||+|+..|+.+++++|+++  +++++..+  |+||||+|+..|+.+++++|
T Consensus         9 ~~~~~~~~~Lis-~~a--~~~-D~~G~TpLh~Aa~~g~~eiv~~Ll~~--ga~~n~~d--~~TpLh~Aa~~g~~eiV~lL   80 (284)
T PHA02791          9 WKSKQLKSFLSS-KDA--FKA-DVHGHSALYYAIADNNVRLVCTLLNA--GALKNLLE--NEFPLHQAATLEDTKIVKIL   80 (284)
T ss_pred             cCHHHHHHHHHh-CCC--CCC-CCCCCcHHHHHHHcCCHHHHHHHHHC--cCCCcCCC--CCCHHHHHHHCCCHHHHHHH
Confidence            356788886665 454  345 89999999999999999999999999  78777654  78999999999999999999


Q ss_pred             HhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc-cccCCCCh-hhHHHHHHHcCChHHHHHHHhcCchhhhhcc
Q 041247          127 MKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK-NSLTDDDC-IELLVQLIETGFYVVALQLLRDRPRLATKRA  204 (507)
Q Consensus       127 l~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g-~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d  204 (507)
                      ++.|+++ +.+|..|.||||+|+..|+.+++++|++.++ .+..+..| .||||.|+..|+.+++++|+++.+..   .|
T Consensus        81 L~~Gadv-n~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~---~d  156 (284)
T PHA02791         81 LFSGMDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST---FD  156 (284)
T ss_pred             HHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc---cc
Confidence            9999997 8899999999999999999999999999998 77777777 59999999999999999999985432   23


Q ss_pred             -cCCchHHHHHHhcCCccccccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChH-HHHH
Q 041247          205 -ENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRL-IFDA  282 (507)
Q Consensus       205 -~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~-Lh~A  282 (507)
                       ..|.||||+|++.|+                            .++++.|+++++ +++.    .+..|  .|| ||+|
T Consensus       157 ~~~g~TpLh~Aa~~g~----------------------------~eiv~lLL~~gA-d~n~----~d~~g--~t~~L~~A  201 (284)
T PHA02791        157 LAILLSCIHITIKNGH----------------------------VDMMILLLDYMT-STNT----NNSLL--FIPDIKLA  201 (284)
T ss_pred             cccCccHHHHHHHcCC----------------------------HHHHHHHHHCCC-CCCc----ccCCC--CChHHHHH
Confidence             358999999999999                            999999999998 7775    33334  655 9999


Q ss_pred             HHcCcHHHHHHHHHHCcccccccccCCCchHHHHHHhCchHHHHHHHhchhhh
Q 041247          283 AKRGNVLFLLILIREYADLMRKCDENGYTIFHVAVLNRLEELFKFIYDAKSIA  335 (507)
Q Consensus       283 ~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~ga~~  335 (507)
                      +.+|+.+++++|+++|+++ +.+|..| |+|      ++.|++++|+++.++-
T Consensus       202 a~~~~~e~v~lLl~~Ga~i-n~~~~~~-~~l------~~~e~~~~ll~~~~~~  246 (284)
T PHA02791        202 IDNKDLEMLQALFKYDINI-YSVNLEN-VLL------DDAEIAKMIIEKHVEY  246 (284)
T ss_pred             HHcCCHHHHHHHHHCCCCC-ccCcccC-ccC------CCHHHHHHHHHhhhhh
Confidence            9999999999999999998 8998854 666      7889999999988764

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.2e-37  Score=254.73  Aligned_cols=208  Identities=24%  Similarity=0.221  Sum_probs=190.9

Q ss_pred             cccHHHHHHHcCCChhhHHHHhCCC-CCCCc-cccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHH
Q 041247            4 ILSGLGWVMTNGIKEAPRVLLSNGG-ANLSE-DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQ   81 (507)
Q Consensus         4 g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~-~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~   81 (507)
                      +.++.+.+|......-++.+++... ..+.+ |.+|+||||+||..|+.+++..|+.+.+..++.+ |..||||||+|+.
T Consensus         3 ~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddk-DdaGWtPlhia~s   81 (226)
T KOG4412|consen    3 YASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDK-DDAGWTPLHIAAS   81 (226)
T ss_pred             ccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCc-cccCCchhhhhhh
Confidence            6788899999998888998888765 33444 5699999999999999999999998777788888 9999999999999


Q ss_pred             cCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHH
Q 041247           82 ANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLH  161 (507)
Q Consensus        82 ~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll  161 (507)
                      .|+.|+|+.|+.+. ++++|..++.|+|+||||+..|+.+|+++|+++|+.+ +.+|..|.||||.|+..|+.+++++|+
T Consensus        82 ~g~~evVk~Ll~r~-~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i-~~kD~~~qtplHRAAavGklkvie~Li  159 (226)
T KOG4412|consen   82 NGNDEVVKELLNRS-GADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALI-RIKDKQGQTPLHRAAAVGKLKVIEYLI  159 (226)
T ss_pred             cCcHHHHHHHhcCC-CCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCC-cccccccCchhHHHHhccchhhHHHHH
Confidence            99999999999987 8999999999999999999999999999999999886 999999999999999999999999999


Q ss_pred             hccc-cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHh
Q 041247          162 KQTK-NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLAR  216 (507)
Q Consensus       162 ~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~  216 (507)
                      ..++ .+.+|..|+||||.|...|+.++...|++. +.+....|++| ||+..|+.
T Consensus       160 ~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~-gAd~~~edke~-t~~~~a~~  213 (226)
T KOG4412|consen  160 SQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRA-GADTDREDKEG-TALRIACN  213 (226)
T ss_pred             hcCCCCCcccccCccHHHHHHhccCchHHHHHHHh-ccceeeccccC-chHHHHHH
Confidence            9999 999999999999999999999999999999 47777889988 99877753

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=1e-37  Score=327.53  Aligned_cols=326  Identities=19%  Similarity=0.161  Sum_probs=187.9

Q ss_pred             cccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcC
Q 041247            4 ILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQAN   83 (507)
Q Consensus         4 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g   83 (507)
                      |.||||.|+..|+.+++++++.+|+.++..+-.|.||+|.||..+..++.++++++ ++++..+ +....||+|+|.+.|
T Consensus       242 gl~~lh~a~~~g~~~i~~~l~~~ga~~~~~~vr~~tplh~AA~~~~~e~~~~ll~~-ga~~~~~-~~~~kt~l~~a~~~g  319 (1143)
T KOG4177|consen  242 GLTPLHVAAFMGHLDIVKLLLQHGASVNVSTVRGETPLHMAARAGQVEVCKLLLQN-GADVLAK-ARDDQTPLHIASRLG  319 (1143)
T ss_pred             CccHHHHHHhccchhHHHHHHhcccccCcccccccCcchhhhccchhhhHhhhhcc-Ccccccc-cccccChhhhhcccc
Confidence            44556666666666666666666555555555556666666666555555544433 4444444 444455555555555


Q ss_pred             CHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhc
Q 041247           84 CIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQ  163 (507)
Q Consensus        84 ~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~  163 (507)
                      +.++++.+++.  +..++..+..|.||+|+++..++.++..+|.+.++.- ...+..|.||+|.|+..|+.+++++++..
T Consensus       320 ~~~i~~~~l~~--~~~~~aar~~g~t~lHlaa~~~~~~~~~~l~~~~~~~-~~a~~k~~~pl~la~~~g~~~~v~Lll~~  396 (1143)
T KOG4177|consen  320 HEEIVHLLLQA--GATPNAARTAGYTPLHLAAKEGQVEVAGALLEHGAQR-RQAEEKGFTPLHLAVKSGRVSVVELLLEA  396 (1143)
T ss_pred             hHHHHHHHhhc--cCCccccCcCCcccccHhhhhhhHHHHHHhhcccccc-CcccccCCcchhhhcccCchhHHHhhhhc
Confidence            55555555544  3444444444444444444444444444444444432 33444455555555555555555555555


Q ss_pred             cc-cccCCCChhhHHHHHHHcCChHHHHHHHhc---------------------------------CchhhhhcccCCch
Q 041247          164 TK-NSLTDDDCIELLVQLIETGFYVVALQLLRD---------------------------------RPRLATKRAENEET  209 (507)
Q Consensus       164 ~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---------------------------------~~~~~~~~d~~g~t  209 (507)
                      +. ++..+..|.||||.++..++.++++.+++.                                 ++..++..-..|.|
T Consensus       397 ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T  476 (1143)
T KOG4177|consen  397 GADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFT  476 (1143)
T ss_pred             cCCcccCCCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCc
Confidence            54 444444444444444444444444444443                                 13334444444444


Q ss_pred             HHHHHHhcCCcccccccccccc-------ccccchhhhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHH
Q 041247          210 ALHVLARKDLTSTNQNRRGTFF-------QRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDA  282 (507)
Q Consensus       210 ~Lh~A~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A  282 (507)
                      |||+|++.|+.+..+.+..+..       ..-.+..  ..........++.++++++ +++      ...+.|.||||.|
T Consensus       477 ~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lh--la~~~~~v~~~~~l~~~ga-~v~------~~~~r~~TpLh~A  547 (1143)
T KOG4177|consen  477 PLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLH--LAADEDTVKVAKILLEHGA-NVD------LRTGRGYTPLHVA  547 (1143)
T ss_pred             chhhhhccCCchHHHHhhhcCCccCccchhccchhh--hhhhhhhHHHHHHHhhcCC-cee------hhcccccchHHHH
Confidence            4444444444433222221110       0001111  1111222555555565555 433      3455569999999


Q ss_pred             HHcCcHHHHHHHHHHCcccccccccCCCchHHHHHHhCchHHHHHHHhchhhhhhhhccccCCCCC
Q 041247          283 AKRGNVLFLLILIREYADLMRKCDENGYTIFHVAVLNRLEELFKFIYDAKSIADLMVDSNDGEGEM  348 (507)
Q Consensus       283 ~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~d~~g~t  348 (507)
                      +.+|+.++|++|+++|+|+ +.+|+.|+||||.|+..|+.+|+++|+++|+++    |..|.+|.|
T Consensus       548 ~~~g~v~~VkfLLe~gAdv-~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~v----na~d~~g~T  608 (1143)
T KOG4177|consen  548 VHYGNVDLVKFLLEHGADV-NAKDKLGYTPLHQAAQQGHNDIAELLLKHGASV----NAADLDGFT  608 (1143)
T ss_pred             HhcCCchHHHHhhhCCccc-cccCCCCCChhhHHHHcChHHHHHHHHHcCCCC----CcccccCcc
Confidence            9999999999999999998 899999999999999999999999999999999    899999999

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.8e-36  Score=302.48  Aligned_cols=252  Identities=16%  Similarity=0.046  Sum_probs=141.9

Q ss_pred             ccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCC
Q 041247            5 LSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANC   84 (507)
Q Consensus         5 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~   84 (507)
                      .++||.|+..|+.+++++|+++|++++..+..|.||||+|+..|+.++++.|++. +++++.. +..+.||||.|+..|+
T Consensus         3 ~~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~-~~~~~t~L~~A~~~g~   80 (413)
T PHA02875          3 QVALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKH-GAIPDVK-YPDIESELHDAVEEGD   80 (413)
T ss_pred             chHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCcccc-CCCcccHHHHHHHCCC
Confidence            4556666666666666666666655555555556666666666666665555443 4444443 4555556666666666


Q ss_pred             HHHHHHHHHcCCchhh-cccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhc
Q 041247           85 IDFVKELLKMMSTEDL-AKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQ  163 (507)
Q Consensus        85 ~e~v~~Ll~~~~~~~~-~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~  163 (507)
                      .++++.|++.  +.+. +..+..|+||||+|+..|+.+++++|+++|++. +.++..|.||||+|+..|+.+++++|++.
T Consensus        81 ~~~v~~Ll~~--~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~-~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~  157 (413)
T PHA02875         81 VKAVEELLDL--GKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADP-DIPNTDKFSPLHLAVMMGDIKGIELLIDH  157 (413)
T ss_pred             HHHHHHHHHc--CCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            6666665555  3322 233445555555555555555555555555554 55555555555555555555555555555


Q ss_pred             cccccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCccccccccccccccccchhhhhhh
Q 041247          164 TKNSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKEE  243 (507)
Q Consensus       164 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (507)
                      ++                                 +++.+|..|+||||+|+..|+                        
T Consensus       158 g~---------------------------------~~~~~d~~g~TpL~~A~~~g~------------------------  180 (413)
T PHA02875        158 KA---------------------------------CLDIEDCCGCTPLIIAMAKGD------------------------  180 (413)
T ss_pred             CC---------------------------------CCCCCCCCCCCHHHHHHHcCC------------------------
Confidence            44                                 344455556666666666665                        


Q ss_pred             hHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCccccccc---ccCCCchHHHHHHh-
Q 041247          244 NKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKC---DENGYTIFHVAVLN-  319 (507)
Q Consensus       244 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~---d~~g~t~L~~A~~~-  319 (507)
                          .+++++|+++|+ +++.    .+.+|. .||+|+|+..|+.+++++|+++|+++ +..   +..+.||++.+... 
T Consensus       181 ----~eiv~~Ll~~ga-~~n~----~~~~~~-~t~l~~A~~~~~~~iv~~Ll~~gad~-n~~~~~~~~~~t~l~~~~~~~  249 (413)
T PHA02875        181 ----IAICKMLLDSGA-NIDY----FGKNGC-VAALCYAIENNKIDIVRLFIKRGADC-NIMFMIEGEECTILDMICNMC  249 (413)
T ss_pred             ----HHHHHHHHhCCC-CCCc----CCCCCC-chHHHHHHHcCCHHHHHHHHHCCcCc-chHhhcCCCchHHHHHHHhhc
Confidence                666666666655 5443    222221 46677777777777777777777765 433   55677777765432 


Q ss_pred             --CchHHHHHHH
Q 041247          320 --RLEELFKFIY  329 (507)
Q Consensus       320 --~~~~iv~~Ll  329 (507)
                        ...+.++.++
T Consensus       250 ~~~~~~~~~~li  261 (413)
T PHA02875        250 TNLESEAIDALI  261 (413)
T ss_pred             CCcccHHHHHHH
Confidence              2334444444

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.7e-36  Score=309.11  Aligned_cols=288  Identities=15%  Similarity=0.084  Sum_probs=233.3

Q ss_pred             ccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHH
Q 041247           33 EDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFF  112 (507)
Q Consensus        33 ~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh  112 (507)
                      .+..+.||||.|+..|+.++++.|++. +++++.+ |..|+||||+||..|+.++++.|++.  +...+.  ..+.+|+|
T Consensus        33 ~~~~~~tPLh~A~~~g~~e~vk~Ll~~-gadvn~~-d~~g~TpLh~A~~~g~~~~v~~Ll~~--~~~~~~--~~~~~~l~  106 (477)
T PHA02878         33 ASLIPFIPLHQAVEARNLDVVKSLLTR-GHNVNQP-DHRDLTPLHIICKEPNKLGMKEMIRS--INKCSV--FYTLVAIK  106 (477)
T ss_pred             ccccCcchHHHHHHcCCHHHHHHHHHC-CCCCCCC-CCCCCCHHHHHHHCccHhHHHHHHHH--Hhcccc--ccchhhHH
Confidence            355788999999999999999998875 7899988 99999999999999999999999998  333333  56789999


Q ss_pred             HHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHc--CcHHHHHHHHhccc-cccCCCC-hhhHHHHHHHcCChHH
Q 041247          113 YAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAAL--EQGQMVLLLHKQTK-NSLTDDD-CIELLVQLIETGFYVV  188 (507)
Q Consensus       113 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~--g~~~~v~~Ll~~~~-~~~~~~~-g~t~L~~A~~~~~~~~  188 (507)
                      .|+..++.++++.|+..+.+.....+   ...+......  .+.+++++|++.|+ .+..+.+ |.||||.|+..|+.++
T Consensus       107 ~a~~~~~~ei~~~Ll~~~~~~~~~~~---~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~i  183 (477)
T PHA02878        107 DAFNNRNVEIFKIILTNRYKNIQTID---LVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRL  183 (477)
T ss_pred             HHHHcCCHHHHHHHHhCcccCcccCc---HHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHH
Confidence            99999999999999987654211111   1111111112  23569999999999 8888888 9999999999999999


Q ss_pred             HHHHHhcCchhhhhcccCCchHHHHHHhcCCccccccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhccchhhHH
Q 041247          189 ALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEI  268 (507)
Q Consensus       189 v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~  268 (507)
                      ++.|++. +.+++.+|..|+||||.|+..++                            .++++.|+++++ +++.    
T Consensus       184 v~~Ll~~-gad~n~~d~~g~tpLh~A~~~~~----------------------------~~iv~~Ll~~ga-~in~----  229 (477)
T PHA02878        184 TELLLSY-GANVNIPDKTNNSPLHHAVKHYN----------------------------KPIVHILLENGA-STDA----  229 (477)
T ss_pred             HHHHHHC-CCCCCCcCCCCCCHHHHHHHhCC----------------------------HHHHHHHHHcCC-CCCC----
Confidence            9999998 67788999999999999999999                            999999999998 7775    


Q ss_pred             hhhhcCCChHHHHHHHc-CcHHHHHHHHHHCccccccccc-CCCchHHHHHHhCchHHHHHHHhchhhhhhhhccccCCC
Q 041247          269 SKLIARPTRLIFDAAKR-GNVLFLLILIREYADLMRKCDE-NGYTIFHVAVLNRLEELFKFIYDAKSIADLMVDSNDGEG  346 (507)
Q Consensus       269 ~~~~g~g~t~Lh~A~~~-g~~~iv~~Ll~~~~~~~~~~d~-~g~t~L~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~d~~g  346 (507)
                      .+.  .|+||||+|+.. ++.+++++|+++|+++ +.++. .|+||||+|  .++.+++++|++.|+++    +.+|.+|
T Consensus       230 ~d~--~g~TpLh~A~~~~~~~~iv~~Ll~~gadv-n~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadi----n~~d~~g  300 (477)
T PHA02878        230 RDK--CGNTPLHISVGYCKDYDILKLLLEHGVDV-NAKSYILGLTALHSS--IKSERKLKLLLEYGADI----NSLNSYK  300 (477)
T ss_pred             CCC--CCCCHHHHHHHhcCCHHHHHHHHHcCCCC-CccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCC----CCcCCCC
Confidence            333  449999999976 7899999999999998 77765 899999999  57889999999999998    8899999


Q ss_pred             CCcCCCCCccccccchhHHHHHHHHHHHH
Q 041247          347 EMFDPPLYMDIDNASSYMIVATLIVALVF  375 (507)
Q Consensus       347 ~t~~~~~~~~~k~~~s~~vva~LiatvtF  375 (507)
                      +|   |.+...+......++..||.....
T Consensus       301 ~T---pL~~A~~~~~~~~~~~~li~~~~~  326 (477)
T PHA02878        301 LT---PLSSAVKQYLCINIGRILISNICL  326 (477)
T ss_pred             CC---HHHHHHHHcCccchHHHHHHHHHH
Confidence            99   433332222223345556655443

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.5e-35  Score=298.89  Aligned_cols=211  Identities=17%  Similarity=0.133  Sum_probs=186.0

Q ss_pred             CcccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHc
Q 041247            3 NILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQA   82 (507)
Q Consensus         3 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~   82 (507)
                      +|.||||+|+..|+.+++++|+++|++++..+..+.||||.|+..|+.++++.|++. +...+...+.+|.||||+|+..
T Consensus        34 ~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~  112 (413)
T PHA02875         34 DGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDL-GKFADDVFYKDGMTPLHLATIL  112 (413)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHc-CCcccccccCCCCCHHHHHHHh
Confidence            689999999999999999999999998888888999999999999999999999876 4444333377899999999999


Q ss_pred             CCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHh
Q 041247           83 NCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHK  162 (507)
Q Consensus        83 g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  162 (507)
                      |+.+++++|+++  |++++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++
T Consensus       113 ~~~~iv~~Ll~~--gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~TpL~~A~~~g~~eiv~~Ll~  189 (413)
T PHA02875        113 KKLDIMKLLIAR--GADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACL-DIEDCCGCTPLIIAMAKGDIAICKMLLD  189 (413)
T ss_pred             CCHHHHHHHHhC--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            999999999999  8999999999999999999999999999999999997 8899999999999999999999999999


Q ss_pred             ccc-cccCCCCh-hhHHHHHHHcCChHHHHHHHhcCchhhhh---cccCCchHHHHHHhcC
Q 041247          163 QTK-NSLTDDDC-IELLVQLIETGFYVVALQLLRDRPRLATK---RAENEETALHVLARKD  218 (507)
Q Consensus       163 ~~~-~~~~~~~g-~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~---~d~~g~t~Lh~A~~~~  218 (507)
                      .|+ ++..+.+| .+|+|.|+..|+.++++.|++++ .+++.   .+.++.||++.++...
T Consensus       190 ~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~g-ad~n~~~~~~~~~~t~l~~~~~~~  249 (413)
T PHA02875        190 SGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRG-ADCNIMFMIEGEECTILDMICNMC  249 (413)
T ss_pred             CCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCC-cCcchHhhcCCCchHHHHHHHhhc
Confidence            999 77666665 47888899999999999998883 43433   3666778888766443

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.7e-35  Score=299.98  Aligned_cols=325  Identities=14%  Similarity=0.135  Sum_probs=252.8

Q ss_pred             CCcccHHHHHHHcC--CChhhHHHHhCCCCC--CCccccCCHHhHHHHH--cCCHHHHHHHHhhchhccccccC----CC
Q 041247            2 DNILSGLGWVMTNG--IKEAPRVLLSNGGAN--LSEDSLRRLKLYRAAL--NGDWAVAKDIYDKYKVEIGQEIT----NL   71 (507)
Q Consensus         2 ~~g~t~L~~A~~~g--~~~~v~~Ll~~g~~~--~~~~~~g~t~Lh~Aa~--~g~~~~v~~ll~~~~~~i~~~~~----~~   71 (507)
                      .+|+||||+|+..|  +.|++++|+++|+..  +..+..+.+|||.++.  .++.+++++|+...+.+++...+    ..
T Consensus        75 ~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~  154 (672)
T PHA02730         75 NEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCL  154 (672)
T ss_pred             CCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhcccc
Confidence            36899999999977  799999999997544  5567778999999988  89999999999766666665422    37


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCchhhc-------ccccCCC-cHHHHH------HHcCcHHHHHHHHhcCCCCCccC
Q 041247           72 GNTALHVAAQANCIDFVKELLKMMSTEDLA-------KKNKIGC-TAFFYA------AASGMVEIVEEMMKGNKDIAMVP  137 (507)
Q Consensus        72 g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~-------~~d~~g~-t~Lh~A------~~~g~~~iv~~Ll~~~~~~~~~~  137 (507)
                      |.+|+++|+..++.|+|++|+++  |++++       ..|..+. |.||++      ..+++.|++++|+++|+++ +.+
T Consensus       155 ~~~~~yl~~~~~~~eIvklLi~~--g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadI-N~k  231 (672)
T PHA02730        155 GLVDIYVTTPNPRPEVLLWLLKS--ECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSI-HGR  231 (672)
T ss_pred             chhhhhHhcCCCchHHHHHHHHc--CCcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCC-CCC
Confidence            89999999999999999999999  78774       2333444 555544      3567899999999999998 999


Q ss_pred             CCCCChHHHH--HHHcCcHHHHHHHHh--------------------------------ccc-ccc--------------
Q 041247          138 DMDGTLPIVR--AAALEQGQMVLLLHK--------------------------------QTK-NSL--------------  168 (507)
Q Consensus       138 ~~~g~tpL~~--A~~~g~~~~v~~Ll~--------------------------------~~~-~~~--------------  168 (507)
                      |..|+||||+  |...|+.|++++|++                                .+. ...              
T Consensus       232 d~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~  311 (672)
T PHA02730        232 DEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDV  311 (672)
T ss_pred             CCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhh
Confidence            9999999995  555677999999999                                444 222              


Q ss_pred             ------CCCChhh---------------------HHHHHHHcC---ChHHHHHHHhcCchhhhhcccCCchHHHHHHhcC
Q 041247          169 ------TDDDCIE---------------------LLVQLIETG---FYVVALQLLRDRPRLATKRAENEETALHVLARKD  218 (507)
Q Consensus       169 ------~~~~g~t---------------------~L~~A~~~~---~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~  218 (507)
                            .+..|.+                     .||.-.+.+   +.++++.|+++ +.+++.. ..|.||||+|+..+
T Consensus       312 ~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~-GAdIN~k-~~G~TpLH~Aa~~n  389 (672)
T PHA02730        312 MRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDN-GATMDKT-TDNNYPLHDYFVNN  389 (672)
T ss_pred             hhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHC-CCCCCcC-CCCCcHHHHHHHHc
Confidence                  3445543                     677777766   58999999999 6777765 78999999999887


Q ss_pred             C----ccc-cccccccc--c------ccccchhh---hh-hh------hHHHHHHHHHHHHHHhhccchhhHHhhhhcCC
Q 041247          219 L----TST-NQNRRGTF--F------QRCFNLGA---EK-EE------NKQALELVESLWTEVVLSSESVSEISKLIARP  275 (507)
Q Consensus       219 ~----~~~-~~~~~~~~--~------~~~~~~~~---~~-~~------~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g  275 (507)
                      +    .++ ..++..|.  +      .+.+++..   +. ..      .....+++++|+++++ +++.    .|..|  
T Consensus       390 nn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GA-DINa----kD~~G--  462 (672)
T PHA02730        390 NNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMD-DIDM----IDNEN--  462 (672)
T ss_pred             CCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhccc-chhc----cCCCC--
Confidence            5    355 44555554  1      23444431   11 10      1113467999999998 7765    44444  


Q ss_pred             ChHHHHHHHcCcHHHHHHHHHHCccccccccc-CCCchHHHHHHh--CchHHHHHHHhchhhhhhhh
Q 041247          276 TRLIFDAAKRGNVLFLLILIREYADLMRKCDE-NGYTIFHVAVLN--RLEELFKFIYDAKSIADLMV  339 (507)
Q Consensus       276 ~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~-~g~t~L~~A~~~--~~~~iv~~Ll~~ga~~~~~~  339 (507)
                      +||||+|+..++.+++++|+++|+++ +.+|. .|+||||+|+..  ++.+++++|+++|++.+.+.
T Consensus       463 ~TPLh~Aa~~~~~eive~LI~~GAdI-N~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~ga~i~~I~  528 (672)
T PHA02730        463 KTLLYYAVDVNNIQFARRLLEYGASV-NTTSRSIINTAIQKSSYRRENKTKLVDLLLSYHPTLETMI  528 (672)
T ss_pred             CCHHHHHHHhCCHHHHHHHHHCCCCC-CCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHcCCCHHHHH
Confidence            99999999999999999999999998 89996 699999999974  78999999999999886553

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.2e-35  Score=304.95  Aligned_cols=278  Identities=14%  Similarity=0.118  Sum_probs=234.2

Q ss_pred             CChhhHHHHhCCCCCCCccccCCHHhHHHHH--cCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHc-----CCHHHH
Q 041247           16 IKEAPRVLLSNGGANLSEDSLRRLKLYRAAL--NGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQA-----NCIDFV   88 (507)
Q Consensus        16 ~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~--~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~-----g~~e~v   88 (507)
                      ..+.|+.|++.+ +++.. ..+.|+++.+..  .++.++++.|++ +|++++.+ |..|.||||.|+..     ++.+++
T Consensus        17 ~~~~v~~ll~~~-~~~~~-~~~~~~~~~yl~~~~~~~~iv~~Ll~-~Gadvn~~-d~~g~TpL~~~~~n~~~~~~~~~iv   92 (489)
T PHA02798         17 KLSTVKLLIKSC-NPNEI-VNEYSIFQKYLQRDSPSTDIVKLFIN-LGANVNGL-DNEYSTPLCTILSNIKDYKHMLDIV   92 (489)
T ss_pred             cHHHHHHHHhcC-Chhhh-cccchHHHHHHhCCCCCHHHHHHHHH-CCCCCCCC-CCCCCChHHHHHHhHHhHHhHHHHH
Confidence            356899999876 33333 446677664444  457999998886 58999998 99999999999864     678999


Q ss_pred             HHHHHcCCchhhcccccCCCcHHHHHHHcC---cHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCc---HHHHHHHHh
Q 041247           89 KELLKMMSTEDLAKKNKIGCTAFFYAAASG---MVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQ---GQMVLLLHK  162 (507)
Q Consensus        89 ~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g---~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~---~~~v~~Ll~  162 (507)
                      ++|+++  |++++.+|..|+||||+|+..+   +.+++++|+++|+++ +.+|.+|.||||+|++.|+   .+++++|++
T Consensus        93 ~~Ll~~--GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~  169 (489)
T PHA02798         93 KILIEN--GADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADT-TLLDKDGFTMLQVYLQSNHHIDIEIIKLLLE  169 (489)
T ss_pred             HHHHHC--CCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCc-cccCCCCCcHHHHHHHcCCcchHHHHHHHHH
Confidence            999999  8999999999999999999875   789999999999997 8999999999999999988   999999999


Q ss_pred             ccc-cccC-CCChhhHHHHHHHc----CChHHHHHHHhcCchhhhhcccCCchHHHH-------HHhcCCcccccccccc
Q 041247          163 QTK-NSLT-DDDCIELLVQLIET----GFYVVALQLLRDRPRLATKRAENEETALHV-------LARKDLTSTNQNRRGT  229 (507)
Q Consensus       163 ~~~-~~~~-~~~g~t~L~~A~~~----~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~-------A~~~~~~~~~~~~~~~  229 (507)
                      .|+ .+.. +..|.||||.++..    ++.+++++|+++ +.+++..+..|.++++.       +...++          
T Consensus       170 ~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~-Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~----------  238 (489)
T PHA02798        170 KGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDN-GFIINKENKSHKKKFMEYLNSLLYDNKRFK----------  238 (489)
T ss_pred             hCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHC-CCCcccCCccccchHHHHHHHHHhhcccch----------
Confidence            998 5555 46789999998765    479999999998 67777888888988762       223333          


Q ss_pred             ccccccchhhhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCcccccccccCC
Q 041247          230 FFQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDENG  309 (507)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g  309 (507)
                                        .++++++++ +. +++.    .+..  |+||||+|+.+|+.+++++|++.|+|+ +.+|..|
T Consensus       239 ------------------~~i~~~l~~-~~-dvN~----~d~~--G~TPL~~A~~~~~~~~v~~LL~~GAdi-n~~d~~G  291 (489)
T PHA02798        239 ------------------KNILDFIFS-YI-DINQ----VDEL--GFNPLYYSVSHNNRKIFEYLLQLGGDI-NIITELG  291 (489)
T ss_pred             ------------------HHHHHHHHh-cC-CCCC----cCcC--CccHHHHHHHcCcHHHHHHHHHcCCcc-cccCCCC
Confidence                              677777765 45 6665    3334  499999999999999999999999998 9999999


Q ss_pred             CchHHHHHHhCchHHHHHHHhchhhhhhh
Q 041247          310 YTIFHVAVLNRLEELFKFIYDAKSIADLM  338 (507)
Q Consensus       310 ~t~L~~A~~~~~~~iv~~Ll~~ga~~~~~  338 (507)
                      +||||.|+++++.++++.|++.|++++.+
T Consensus       292 ~TpL~~A~~~~~~~iv~~lL~~~~~~~~i  320 (489)
T PHA02798        292 NTCLFTAFENESKFIFNSILNKKPNKNTI  320 (489)
T ss_pred             CcHHHHHHHcCcHHHHHHHHccCCCHHHH
Confidence            99999999999999999999999988644

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.1e-36  Score=247.47  Aligned_cols=179  Identities=18%  Similarity=0.127  Sum_probs=143.1

Q ss_pred             CCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHH
Q 041247           37 RRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAA  116 (507)
Q Consensus        37 g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~  116 (507)
                      +.++.+.+++.....-++.++++.+..++.+.|.+|+||||+||..|+.+++++|++.. +..++.+|..|+||||.|+.
T Consensus         3 ~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~-nv~~ddkDdaGWtPlhia~s   81 (226)
T KOG4412|consen    3 YASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQP-NVKPDDKDDAGWTPLHIAAS   81 (226)
T ss_pred             ccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcC-CCCCCCccccCCchhhhhhh
Confidence            45678888888888888889998887888886779999999999999999999999754 77899999999999999999


Q ss_pred             cCcHHHHHHHHhc-CCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHHHh
Q 041247          117 SGMVEIVEEMMKG-NKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLLR  194 (507)
Q Consensus       117 ~g~~~iv~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  194 (507)
                      .|+.++|+.|+.+ ++++ +..++.|.|+||+|+..|+.+++++|++.++ ++.+|..|.||||.|+.-|+.+++++|+.
T Consensus        82 ~g~~evVk~Ll~r~~adv-na~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~  160 (226)
T KOG4412|consen   82 NGNDEVVKELLNRSGADV-NATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLIS  160 (226)
T ss_pred             cCcHHHHHHHhcCCCCCc-ceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHh
Confidence            9999999999999 8897 8999999999999999999999999999887 66666666666666665555555555555


Q ss_pred             cCchhhhhcccCCchHHHHHHhcC
Q 041247          195 DRPRLATKRAENEETALHVLARKD  218 (507)
Q Consensus       195 ~~~~~~~~~d~~g~t~Lh~A~~~~  218 (507)
                      . +..+|.+|+.|+||||.|...+
T Consensus       161 ~-~a~~n~qDk~G~TpL~~al~e~  183 (226)
T KOG4412|consen  161 Q-GAPLNTQDKYGFTPLHHALAEG  183 (226)
T ss_pred             c-CCCCCcccccCccHHHHHHhcc
Confidence            5 2444455555555555443333

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.6e-35  Score=306.84  Aligned_cols=314  Identities=18%  Similarity=0.113  Sum_probs=189.3

Q ss_pred             HHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHH--HcCCHHHHHHHHhhchhccccccCC---CC---------
Q 041247            7 GLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAA--LNGDWAVAKDIYDKYKVEIGQEITN---LG---------   72 (507)
Q Consensus         7 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa--~~g~~~~v~~ll~~~~~~i~~~~~~---~g---------   72 (507)
                      ++|+|+.+|+.|++++|+++|++++..|..|.||||.|+  ..|+.++++.|++ ++++++.+ |.   .|         
T Consensus       106 ~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~-~Ga~vn~~-d~~~~~g~~~~~~~~~  183 (661)
T PHA02917        106 FSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIE-NGCSVLYE-DEDDEYGYAYDDYQPR  183 (661)
T ss_pred             HHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHH-cCCCcccc-cccccccccccccccc
Confidence            344455555556666666666666666666666666432  3456666665554 35555533 21   22         


Q ss_pred             --CcHHHHHHH-----------cCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcH--HHHHHHHhcCCCCC---
Q 041247           73 --NTALHVAAQ-----------ANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMV--EIVEEMMKGNKDIA---  134 (507)
Q Consensus        73 --~t~Lh~Aa~-----------~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~--~iv~~Ll~~~~~~~---  134 (507)
                        .||||+|+.           .++.++|++|+++  |++++.+|.+|.||||+|+.+|+.  +++++|++ |++..   
T Consensus       184 ~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~--Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~~  260 (661)
T PHA02917        184 NCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINH--GIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAYS  260 (661)
T ss_pred             ccccHHHHHHhhcccccccccccCcHHHHHHHHHC--CCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcccccc
Confidence              366666654           3456666666666  566666666666666666666653  56666653 54431   


Q ss_pred             ccCCCCCChHHHHHHH-------c--CcHHHHHHHHhccc-cc-------cCCC------------ChhhHHHHHH---H
Q 041247          135 MVPDMDGTLPIVRAAA-------L--EQGQMVLLLHKQTK-NS-------LTDD------------DCIELLVQLI---E  182 (507)
Q Consensus       135 ~~~~~~g~tpL~~A~~-------~--g~~~~v~~Ll~~~~-~~-------~~~~------------~g~t~L~~A~---~  182 (507)
                      ...|..|.+|+++|+.       +  .+.++++.|++.|+ ..       ..+.            .+.+++|.+.   .
T Consensus       261 ~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  340 (661)
T PHA02917        261 YIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSDVLQHILIEYMT  340 (661)
T ss_pred             cccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhchHHHHHHHHHHHH
Confidence            1344455566666652       1  14566666666664 10       0111            1223333333   3


Q ss_pred             cCC--hHHHHHHHhcC-----------------------------chhhhhcccCCchHHHHHHhcCCcccccccccccc
Q 041247          183 TGF--YVVALQLLRDR-----------------------------PRLATKRAENEETALHVLARKDLTSTNQNRRGTFF  231 (507)
Q Consensus       183 ~~~--~~~v~~Ll~~~-----------------------------~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~  231 (507)
                      .|.  .++++.|++.+                             +...+.++.+|+||||.|++.+.......  .-..
T Consensus       341 ~g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~--~~~~  418 (661)
T PHA02917        341 FGDIDIPLVECMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNFY--TYTY  418 (661)
T ss_pred             cCCCcHHHHHHHHHcCCCCCCCCccccchhhcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccchhhh--hhhh
Confidence            444  34777777651                             22223334567888887776554111000  0000


Q ss_pred             ccccchhhhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCcccccccccCCCc
Q 041247          232 QRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYT  311 (507)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t  311 (507)
                      .....   .........++++.|+++|+ +++.    .+..|  +||||+|+..++.+++++|++.|+++ +.+|..|+|
T Consensus       419 ~~~~~---~~~~~~~~~~~v~~Ll~~GA-dIN~----kd~~G--~TpLh~Aa~~~~~~~v~~Ll~~GAdi-n~~d~~G~T  487 (661)
T PHA02917        419 KKGLC---DMSYACPILSTINICLPYLK-DINM----IDKRG--ETLLHKAVRYNKQSLVSLLLESGSDV-NIRSNNGYT  487 (661)
T ss_pred             hhccc---hhhhhhhhHHHHHHHHHCCC-CCCC----CCCCC--cCHHHHHHHcCCHHHHHHHHHCcCCC-CCCCCCCCC
Confidence            00000   00011114789999999999 8876    34444  99999999999999999999999998 999999999


Q ss_pred             hHHHHHH-hCchHHHHHHHhchhhhhhh
Q 041247          312 IFHVAVL-NRLEELFKFIYDAKSIADLM  338 (507)
Q Consensus       312 ~L~~A~~-~~~~~iv~~Ll~~ga~~~~~  338 (507)
                      |||+|+. .++.+++++|+++|++.+.+
T Consensus       488 ~L~~A~~~~~~~~iv~~LL~~ga~i~~i  515 (661)
T PHA02917        488 CIAIAINESRNIELLKMLLCHKPTLDCV  515 (661)
T ss_pred             HHHHHHHhCCCHHHHHHHHHcCCChhHH
Confidence            9999996 68899999999999988644

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.5e-35  Score=301.81  Aligned_cols=258  Identities=14%  Similarity=0.079  Sum_probs=221.6

Q ss_pred             CCcccHHHHHHHcC--CChhhHHHHhCCCCCCCccccCCHHhHHHHHcC------CHHHHHHHHhhchhccccccCCCCC
Q 041247            2 DNILSGLGWVMTNG--IKEAPRVLLSNGGANLSEDSLRRLKLYRAALNG------DWAVAKDIYDKYKVEIGQEITNLGN   73 (507)
Q Consensus         2 ~~g~t~L~~A~~~g--~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g------~~~~v~~ll~~~~~~i~~~~~~~g~   73 (507)
                      ++|.||||.++..+  +.++|++|+++|++++.++ .+.||||.|+..+      +.++++.|++ +|++++.+ |..|.
T Consensus        33 ~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~-~Gadin~~-d~~g~  109 (494)
T PHA02989         33 YRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKG-YIETPLCAVLRNREITSNKIKKIVKLLLK-FGADINLK-TFNGV  109 (494)
T ss_pred             cCCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCC-CCCCcHHHHHhccCcchhhHHHHHHHHHH-CCCCCCCC-CCCCC
Confidence            36889998766553  6899999999999998776 5799999998764      4689997775 58999998 99999


Q ss_pred             cHHHHHHHc---CCHHHHHHHHHcCCchhh-cccccCCCcHHHHHHHc--CcHHHHHHHHhcCCCCCccCCCCCChHHHH
Q 041247           74 TALHVAAQA---NCIDFVKELLKMMSTEDL-AKKNKIGCTAFFYAAAS--GMVEIVEEMMKGNKDIAMVPDMDGTLPIVR  147 (507)
Q Consensus        74 t~Lh~Aa~~---g~~e~v~~Ll~~~~~~~~-~~~d~~g~t~Lh~A~~~--g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~  147 (507)
                      ||||.|+..   |+.|++++|+++  |+++ +.+|..|+||||+|+..  ++.+++++|+++|+++....+..|.||||.
T Consensus       110 tpL~~a~~~~~~~~~eiv~~Ll~~--Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~  187 (494)
T PHA02989        110 SPIVCFIYNSNINNCDMLRFLLSK--GINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNI  187 (494)
T ss_pred             cHHHHHHHhcccCcHHHHHHHHHC--CCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHH
Confidence            999998765   679999999999  8999 89999999999998764  689999999999999733368899999999


Q ss_pred             HHHcC----cHHHHHHHHhccc-cccCCCChhhHHHHHHHcC------ChHHHHHHHhcCchhhhhcccCCchHHHHHHh
Q 041247          148 AAALE----QGQMVLLLHKQTK-NSLTDDDCIELLVQLIETG------FYVVALQLLRDRPRLATKRAENEETALHVLAR  216 (507)
Q Consensus       148 A~~~g----~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~------~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~  216 (507)
                      |++.+    +.+++++|++.|+ .+..+..+.+++|.++..+      ..+++++++.  +.+++.+|..|+||||+|+.
T Consensus       188 a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~--~advn~~d~~G~TpL~~Aa~  265 (494)
T PHA02989        188 YLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILK--YIKINKKDKKGFNPLLISAK  265 (494)
T ss_pred             HHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHh--CCCCCCCCCCCCCHHHHHHH
Confidence            98764    8999999999999 8888888999999877653      4567776655  37788999999999999999


Q ss_pred             cCCccccccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHH
Q 041247          217 KDLTSTNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIR  296 (507)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~  296 (507)
                      .++                            .+++++|+++|+ +++.    .+.  .|+||||+|+++|+.++++.|++
T Consensus       266 ~~~----------------------------~~~v~~LL~~Ga-din~----~d~--~G~TpL~~A~~~~~~~iv~~LL~  310 (494)
T PHA02989        266 VDN----------------------------YEAFNYLLKLGD-DIYN----VSK--DGDTVLTYAIKHGNIDMLNRILQ  310 (494)
T ss_pred             hcC----------------------------HHHHHHHHHcCC-Cccc----cCC--CCCCHHHHHHHcCCHHHHHHHHh
Confidence            999                            999999999999 8776    344  44999999999999999999999


Q ss_pred             HCccc
Q 041247          297 EYADL  301 (507)
Q Consensus       297 ~~~~~  301 (507)
                      .+|..
T Consensus       311 ~~p~~  315 (494)
T PHA02989        311 LKPGK  315 (494)
T ss_pred             cCCCh
Confidence            88764

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=2.2e-35  Score=275.03  Aligned_cols=189  Identities=21%  Similarity=0.221  Sum_probs=172.1

Q ss_pred             CCcccHHHHHHHcCCChhhHHHHhC-CCCCCC--------ccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCC
Q 041247            2 DNILSGLGWVMTNGIKEAPRVLLSN-GGANLS--------EDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLG   72 (507)
Q Consensus         2 ~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~--------~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g   72 (507)
                      .+|-|||-+||++||.++|++|+++ ++++..        ....|-+||--|+..||+++||.|+.. ++++|.. ....
T Consensus        40 ~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~-ga~VN~t-T~TN  117 (615)
T KOG0508|consen   40 QNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRR-GASVNDT-TRTN  117 (615)
T ss_pred             cCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHh-cCccccc-cccC
Confidence            3688999999999999999999994 444432        245788999999999999999988765 6999887 6667


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcC
Q 041247           73 NTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALE  152 (507)
Q Consensus        73 ~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g  152 (507)
                      .|||--||..|+.|+||+|+++  ++|++..|+.|+|.||.||..|+.+|+++|++.|+|+ +.++..|.|+||.|++.|
T Consensus       118 StPLraACfDG~leivKyLvE~--gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADv-n~ks~kGNTALH~caEsG  194 (615)
T KOG0508|consen  118 STPLRAACFDGHLEIVKYLVEH--GADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADV-NAKSYKGNTALHDCAESG  194 (615)
T ss_pred             CccHHHHHhcchhHHHHHHHHc--CCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCc-chhcccCchHHHhhhhcc
Confidence            7999999999999999999999  8999999999999999999999999999999999997 999999999999999999


Q ss_pred             cHHHHHHHHhccccccCCCChhhHHHHHHHcCChHHHHHHHhc
Q 041247          153 QGQMVLLLHKQTKNSLTDDDCIELLVQLIETGFYVVALQLLRD  195 (507)
Q Consensus       153 ~~~~v~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  195 (507)
                      +.|++++|+.+++.-..|..|.|||-.|...|+.+++..|++.
T Consensus       195 ~vdivq~Ll~~ga~i~~d~~GmtPL~~Aa~tG~~~iVe~L~~~  237 (615)
T KOG0508|consen  195 SVDIVQLLLKHGAKIDVDGHGMTPLLLAAVTGHTDIVERLLQC  237 (615)
T ss_pred             cHHHHHHHHhCCceeeecCCCCchHHHHhhhcchHHHHHHhcC
Confidence            9999999999999556677799999999999999999999954

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=7.6e-35  Score=298.97  Aligned_cols=260  Identities=10%  Similarity=0.021  Sum_probs=224.8

Q ss_pred             CcccHHHHHHHc--CCChhhHHHHhCCCCCCCccccCCHHhHHHHHc-----CCHHHHHHHHhhchhccccccCCCCCcH
Q 041247            3 NILSGLGWVMTN--GIKEAPRVLLSNGGANLSEDSLRRLKLYRAALN-----GDWAVAKDIYDKYKVEIGQEITNLGNTA   75 (507)
Q Consensus         3 ~g~t~L~~A~~~--g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~-----g~~~~v~~ll~~~~~~i~~~~~~~g~t~   75 (507)
                      +|.|+++.+...  ++.+++++|+++|++++..|..|.||||.|+.+     ++.++++.|++ ++++++.+ |..|+||
T Consensus        35 ~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~-~GadiN~~-d~~G~Tp  112 (489)
T PHA02798         35 NEYSIFQKYLQRDSPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIE-NGADINKK-NSDGETP  112 (489)
T ss_pred             ccchHHHHHHhCCCCCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHH-CCCCCCCC-CCCcCcH
Confidence            466777655544  478999999999999999999999999999864     67899997776 58999998 9999999


Q ss_pred             HHHHHHcC---CHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCc---HHHHHHHHhcCCCCCccC-CCCCChHHHHH
Q 041247           76 LHVAAQAN---CIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGM---VEIVEEMMKGNKDIAMVP-DMDGTLPIVRA  148 (507)
Q Consensus        76 Lh~Aa~~g---~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~---~~iv~~Ll~~~~~~~~~~-~~~g~tpL~~A  148 (507)
                      ||+|+..+   +.+++++|+++  |++++.+|..|.||||+|++.|+   .+++++|+++|+++ +.. +..|.||||.+
T Consensus       113 Lh~a~~~~~~~~~~iv~~Ll~~--Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadi-n~~~~~~~~t~Lh~~  189 (489)
T PHA02798        113 LYCLLSNGYINNLEILLFMIEN--GADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDI-NTHNNKEKYDTLHCY  189 (489)
T ss_pred             HHHHHHcCCcChHHHHHHHHHc--CCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCc-ccccCcCCCcHHHHH
Confidence            99999986   78999999999  89999999999999999999988   99999999999997 555 56789999998


Q ss_pred             HHc----CcHHHHHHHHhccc-cccCCCChhhHHH-------HHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHh
Q 041247          149 AAL----EQGQMVLLLHKQTK-NSLTDDDCIELLV-------QLIETGFYVVALQLLRDRPRLATKRAENEETALHVLAR  216 (507)
Q Consensus       149 ~~~----g~~~~v~~Ll~~~~-~~~~~~~g~t~L~-------~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~  216 (507)
                      +..    ++.+++++|+++|+ .+..+..+.++++       .+...++.++++.|+..  .+++.+|..|+||||+|+.
T Consensus       190 ~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~--~dvN~~d~~G~TPL~~A~~  267 (489)
T PHA02798        190 FKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSY--IDINQVDELGFNPLYYSVS  267 (489)
T ss_pred             HHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhc--CCCCCcCcCCccHHHHHHH
Confidence            765    47999999999999 7777778888766       23445667888777663  6788999999999999999


Q ss_pred             cCCccccccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHH
Q 041247          217 KDLTSTNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIR  296 (507)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~  296 (507)
                      .++                            .+++++|+++|+ +++.    .+..|  +||||.|+++++.++++.|++
T Consensus       268 ~~~----------------------------~~~v~~LL~~GA-din~----~d~~G--~TpL~~A~~~~~~~iv~~lL~  312 (489)
T PHA02798        268 HNN----------------------------RKIFEYLLQLGG-DINI----ITELG--NTCLFTAFENESKFIFNSILN  312 (489)
T ss_pred             cCc----------------------------HHHHHHHHHcCC-cccc----cCCCC--CcHHHHHHHcCcHHHHHHHHc
Confidence            999                            999999999999 8776    44444  999999999999999999999


Q ss_pred             HCccccccc
Q 041247          297 EYADLMRKC  305 (507)
Q Consensus       297 ~~~~~~~~~  305 (507)
                      +++++ +..
T Consensus       313 ~~~~~-~~i  320 (489)
T PHA02798        313 KKPNK-NTI  320 (489)
T ss_pred             cCCCH-HHH
Confidence            99997 443

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=5.6e-36  Score=314.54  Aligned_cols=290  Identities=22%  Similarity=0.218  Sum_probs=185.0

Q ss_pred             cccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcC
Q 041247            4 ILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQAN   83 (507)
Q Consensus         4 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g   83 (507)
                      |.||||.++..|+.++..++.+.+......+..+.||+|.|+..|..+.++.++.+ +.+.+.+ +..|.||||.|+.++
T Consensus       341 g~t~lHlaa~~~~~~~~~~l~~~~~~~~~a~~k~~~pl~la~~~g~~~~v~Lll~~-ga~~~~~-gk~gvTplh~aa~~~  418 (1143)
T KOG4177|consen  341 GYTPLHLAAKEGQVEVAGALLEHGAQRRQAEEKGFTPLHLAVKSGRVSVVELLLEA-GADPNSA-GKNGVTPLHVAAHYG  418 (1143)
T ss_pred             CcccccHhhhhhhHHHHHHhhccccccCcccccCCcchhhhcccCchhHHHhhhhc-cCCcccC-CCCCcceeeehhhcc
Confidence            34444444444444444444444444444444444455555555555444433322 3344444 444555555555555


Q ss_pred             CHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcC-cHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHh
Q 041247           84 CIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASG-MVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHK  162 (507)
Q Consensus        84 ~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g-~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  162 (507)
                      +.++|+.+++.  +++.+..+..|.||+|.|+..| ..++...+++.+.+. +..-..|.||||.|+..|+.++++.+++
T Consensus       419 ~~~~v~l~l~~--gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~-n~~s~~G~T~Lhlaaq~Gh~~~~~llle  495 (1143)
T KOG4177|consen  419 NPRVVKLLLKR--GASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADP-NAVSKQGFTPLHLAAQEGHTEVVQLLLE  495 (1143)
T ss_pred             CcceEEEEecc--CCChhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCc-chhccccCcchhhhhccCCchHHHHhhh
Confidence            55555555544  4555555555555555555555 455555555555553 4555555555555555555555555555


Q ss_pred             ccc-cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCccccccccccccccccchhhhh
Q 041247          163 QTK-NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEK  241 (507)
Q Consensus       163 ~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (507)
                      .++ .+.....+.+++|.+...+...+++.++++ +...+.++.+|+||||.|+.+|+                      
T Consensus       496 ~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~-ga~v~~~~~r~~TpLh~A~~~g~----------------------  552 (1143)
T KOG4177|consen  496 GGANDNLDAKKGLTPLHLAADEDTVKVAKILLEH-GANVDLRTGRGYTPLHVAVHYGN----------------------  552 (1143)
T ss_pred             cCCccCccchhccchhhhhhhhhhHHHHHHHhhc-CCceehhcccccchHHHHHhcCC----------------------
Confidence            554 444444555555555555555555555555 45555666777777777777777                      


Q ss_pred             hhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCcccccccccCCCchHHHHHHhCc
Q 041247          242 EENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIFHVAVLNRL  321 (507)
Q Consensus       242 ~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~  321 (507)
                            ..+|++|+++++ +++.    +++.|  +||||.|+..|+.+++++|+++|+++ |..|.+|.|||++|+..|+
T Consensus       553 ------v~~VkfLLe~gA-dv~a----k~~~G--~TPLH~Aa~~G~~~i~~LLlk~GA~v-na~d~~g~TpL~iA~~lg~  618 (1143)
T KOG4177|consen  553 ------VDLVKFLLEHGA-DVNA----KDKLG--YTPLHQAAQQGHNDIAELLLKHGASV-NAADLDGFTPLHIAVRLGY  618 (1143)
T ss_pred             ------chHHHHhhhCCc-cccc----cCCCC--CChhhHHHHcChHHHHHHHHHcCCCC-CcccccCcchhHHHHHhcc
Confidence                  999999999999 8876    44444  99999999999999999999999998 9999999999999999999


Q ss_pred             hHHHHHHHhchhhh
Q 041247          322 EELFKFIYDAKSIA  335 (507)
Q Consensus       322 ~~iv~~Ll~~ga~~  335 (507)
                      .+++++|+..++.+
T Consensus       619 ~~~~k~l~~~~~~~  632 (1143)
T KOG4177|consen  619 LSVVKLLKVVTATP  632 (1143)
T ss_pred             cchhhHHHhccCcc
Confidence            99999999999873

>PHA02792 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.3e-31  Score=268.99  Aligned_cols=296  Identities=14%  Similarity=0.097  Sum_probs=221.2

Q ss_pred             CcccHHHH-HHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHH-cCCHHHHHHHHhhchhccc---------------
Q 041247            3 NILSGLGW-VMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAAL-NGDWAVAKDIYDKYKVEIG---------------   65 (507)
Q Consensus         3 ~g~t~L~~-A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~-~g~~~~v~~ll~~~~~~i~---------------   65 (507)
                      ||.+|+|+ |+.+|+.|+|++|+++|++++.++..+.+|+|+|+. .|+.|++++|++. |++..               
T Consensus        70 ~~~~~~~~~~s~n~~lElvk~LI~~GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~-Gad~~~~~~~g~~~~~~~~~  148 (631)
T PHA02792         70 NDFDIFEYLCSDNIDIELLKLLISKGLEINSIKNGINIVEKYATTSNPNVDVFKLLLDK-GIPTCSNIQYGYKIIIEQIT  148 (631)
T ss_pred             CCccHHHHHHHhcccHHHHHHHHHcCCCcccccCCCCcceeEeecCCCChHHHHHHHHC-CCCcccccccCcchhhhhcc
Confidence            56678877 677789999999999999999888889999999966 6999999988876 54321               


Q ss_pred             ---------------------cccCCCCCcHHHHHHHcC-------CHHHHHHHHHcCCchhhcccccCCCcHHHHHHHc
Q 041247           66 ---------------------QEITNLGNTALHVAAQAN-------CIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAAS  117 (507)
Q Consensus        66 ---------------------~~~~~~g~t~Lh~Aa~~g-------~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~  117 (507)
                                           .+ |..|.||||+|+..+       +.|+++.|+++  |++++..|..|.||||+|+.+
T Consensus       149 ~~~~~~~~~~~~~~~~~~~i~~~-~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~--g~~~~~~d~~g~t~l~~~~~~  225 (631)
T PHA02792        149 RAEYYNWDDELDDYDYDYTTDYD-DRMGKTVLYYYIITRSQDGYATSLDVINYLISH--EKEMRYYTYREHTTLYYYVDK  225 (631)
T ss_pred             cccccchhhhccccccccccccC-CCCCCchHHHHHhhCCcccccCCHHHHHHHHhC--CCCcCccCCCCChHHHHHHHc
Confidence                                 22 456899999999998       89999999999  889999999999999999988


Q ss_pred             C--cHHHHHHHHhcCCCCCc------------cCCC-------------CCCh---------------------------
Q 041247          118 G--MVEIVEEMMKGNKDIAM------------VPDM-------------DGTL---------------------------  143 (507)
Q Consensus       118 g--~~~iv~~Ll~~~~~~~~------------~~~~-------------~g~t---------------------------  143 (507)
                      .  ..|++++|++...+.+.            .++.             +|.+                           
T Consensus       226 ~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  305 (631)
T PHA02792        226 CDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDS  305 (631)
T ss_pred             ccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHH
Confidence            8  78888888874221100            0000             0111                           


Q ss_pred             ---HHHHHHHcC--cHHHHHHHHhccccccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCC--chHHHHHHh
Q 041247          144 ---PIVRAAALE--QGQMVLLLHKQTKNSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENE--ETALHVLAR  216 (507)
Q Consensus       144 ---pL~~A~~~g--~~~~v~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g--~t~Lh~A~~  216 (507)
                         .||.-.+++  +.+++++|++.|+... .......++.|+..|+.++++.|+++ +.+++.+|.+|  .||||.|+.
T Consensus       306 ~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~-r~~~~n~~~~Aa~~gn~eIVelLIs~-GADIN~kD~~g~~~TpLh~A~~  383 (631)
T PHA02792        306 IQDLLSEYVSYHTVYINVIKCMIDEGATLY-RFKHINKYFQKFDNRDPKVVEYILKN-GNVVVEDDDNIINIMPLFPTLS  383 (631)
T ss_pred             HHHHHHHHHhcCCccHHHHHHHHHCCCccc-cCCcchHHHHHHHcCCHHHHHHHHHc-CCchhhhcCCCCChhHHHHHHH
Confidence               122333333  5778888888887221 22345668888889999999999988 67777777764  588988776


Q ss_pred             cCCccccccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHH
Q 041247          217 KDLTSTNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIR  296 (507)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~  296 (507)
                      ...                         ....++++.++++++ +++.    .+..|  .||||.|+..++.+++++|++
T Consensus       384 n~~-------------------------~~v~~IlklLIs~GA-DIN~----kD~~G--~TPLh~Aa~~~n~eivelLLs  431 (631)
T PHA02792        384 IHE-------------------------SDVLSILKLCKPYID-DINK----IDKHG--RSILYYCIESHSVSLVEWLID  431 (631)
T ss_pred             hcc-------------------------HhHHHHHHHHHhcCC-cccc----ccccC--cchHHHHHHcCCHHHHHHHHH
Confidence            654                         112467888888887 7665    44444  899999999999999999999


Q ss_pred             HCcccccccccCCCchHHHHHH----------hCchHHHHHHHhchhhhhh
Q 041247          297 EYADLMRKCDENGYTIFHVAVL----------NRLEELFKFIYDAKSIADL  337 (507)
Q Consensus       297 ~~~~~~~~~d~~g~t~L~~A~~----------~~~~~iv~~Ll~~ga~~~~  337 (507)
                      +|+++ +.+|..|+||||+|+.          ....+++++|+++|.+++.
T Consensus       432 ~GADI-N~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~i~~  481 (631)
T PHA02792        432 NGADI-NITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPTIEC  481 (631)
T ss_pred             CCCCC-CCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCChhH
Confidence            99997 8889999999999875          1224578888888877654

>PHA02792 ankyrin-like protein; Provisional

Probab=99.98  E-value=6.3e-31  Score=263.98  Aligned_cols=299  Identities=12%  Similarity=0.042  Sum_probs=183.8

Q ss_pred             cccHHHHHHHcCCC-hhhHHHHhCCCCCCCccccCCHHhHH-HHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHH
Q 041247            4 ILSGLGWVMTNGIK-EAPRVLLSNGGANLSEDSLRRLKLYR-AALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQ   81 (507)
Q Consensus         4 g~t~L~~A~~~g~~-~~v~~Ll~~g~~~~~~~~~g~t~Lh~-Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~   81 (507)
                      |.||||.-..+.+. .-++.++.-+.+++..+-+|.+++|+ |...|+.|+++.|++ +|++++.+ +..++||+|+|+.
T Consensus        37 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~s~n~~lElvk~LI~-~GAdvN~~-~n~~~~~l~ya~~  114 (631)
T PHA02792         37 GETPLKAYVTKKNNNIKNDVVILLLSSVDYKNINDFDIFEYLCSDNIDIELLKLLIS-KGLEINSI-KNGINIVEKYATT  114 (631)
T ss_pred             CCccHHHHHhhhhhhHHHHHHHHHHhCCCcCccCCccHHHHHHHhcccHHHHHHHHH-cCCCcccc-cCCCCcceeEeec
Confidence            44666654333331 22334444444444555555556654 344566677775555 36667666 5556677677654


Q ss_pred             -cCCHHHHHHHHHcCCchh------------------------------------hcccccCCCcHHHHHHHcC------
Q 041247           82 -ANCIDFVKELLKMMSTED------------------------------------LAKKNKIGCTAFFYAAASG------  118 (507)
Q Consensus        82 -~g~~e~v~~Ll~~~~~~~------------------------------------~~~~d~~g~t~Lh~A~~~g------  118 (507)
                       .++.|++++|+++  |++                                    ++..|..|.||||+|+.++      
T Consensus       115 ~~~~~eivk~Ll~~--Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~  192 (631)
T PHA02792        115 SNPNVDVFKLLLDK--GIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYA  192 (631)
T ss_pred             CCCChHHHHHHHHC--CCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCccccc
Confidence             4667777777766  332                                    1234555666666666666      


Q ss_pred             -cHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcC--cHHHHHHHHhcccc--ccC------------CCC---------
Q 041247          119 -MVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALE--QGQMVLLLHKQTKN--SLT------------DDD---------  172 (507)
Q Consensus       119 -~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g--~~~~v~~Ll~~~~~--~~~------------~~~---------  172 (507)
                       +.|+++.|+++|+++ +..|..|.||||+|+.+.  +.|+++.|++....  ..+            ..+         
T Consensus       193 ~~~~v~k~Li~~g~~~-~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~  271 (631)
T PHA02792        193 TSLDVINYLISHEKEM-RYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVD  271 (631)
T ss_pred             CCHHHHHHHHhCCCCc-CccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHH
Confidence             566666666666665 556666666666666666  55666666653210  000            000         


Q ss_pred             ----h------------------------------hhHHHHHHHcC--ChHHHHHHHhcCchhhhhcccCCchHHHHHHh
Q 041247          173 ----C------------------------------IELLVQLIETG--FYVVALQLLRDRPRLATKRAENEETALHVLAR  216 (507)
Q Consensus       173 ----g------------------------------~t~L~~A~~~~--~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~  216 (507)
                          |                              +-.||.-.+++  +.++++.|++++ ....  ......+++.|+.
T Consensus       272 ~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~G-a~~~--r~~~~n~~~~Aa~  348 (631)
T PHA02792        272 KLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEG-ATLY--RFKHINKYFQKFD  348 (631)
T ss_pred             HHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCC-Cccc--cCCcchHHHHHHH
Confidence                0                              00111112222  223333333331 1110  0112233444444


Q ss_pred             cCCccccccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcH---HHHHH
Q 041247          217 KDLTSTNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNV---LFLLI  293 (507)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~---~iv~~  293 (507)
                      .++                            .+++++|+++|+ +++.    .+.+|.+.||||.|+.....   +++++
T Consensus       349 ~gn----------------------------~eIVelLIs~GA-DIN~----kD~~g~~~TpLh~A~~n~~~~v~~Ilkl  395 (631)
T PHA02792        349 NRD----------------------------PKVVEYILKNGN-VVVE----DDDNIINIMPLFPTLSIHESDVLSILKL  395 (631)
T ss_pred             cCC----------------------------HHHHHHHHHcCC-chhh----hcCCCCChhHHHHHHHhccHhHHHHHHH
Confidence            444                            899999999998 7764    55566568999998887665   46888


Q ss_pred             HHHHCcccccccccCCCchHHHHHHhCchHHHHHHHhchhhhhhhhccccCCCCC
Q 041247          294 LIREYADLMRKCDENGYTIFHVAVLNRLEELFKFIYDAKSIADLMVDSNDGEGEM  348 (507)
Q Consensus       294 Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~d~~g~t  348 (507)
                      |+++|+++ +.+|..|+||||+|+..++.+++++|+++|+++    +.+|..|+|
T Consensus       396 LIs~GADI-N~kD~~G~TPLh~Aa~~~n~eivelLLs~GADI----N~kD~~G~T  445 (631)
T PHA02792        396 CKPYIDDI-NKIDKHGRSILYYCIESHSVSLVEWLIDNGADI----NITTKYGST  445 (631)
T ss_pred             HHhcCCcc-ccccccCcchHHHHHHcCCHHHHHHHHHCCCCC----CCcCCCCCC
Confidence            99999998 999999999999999999999999999999998    889999999

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.98  E-value=2.5e-31  Score=248.04  Aligned_cols=155  Identities=24%  Similarity=0.260  Sum_probs=146.9

Q ss_pred             CcccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHc
Q 041247            3 NILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQA   82 (507)
Q Consensus         3 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~   82 (507)
                      +|.+||..|+..||.++||.|+++|++++.......|||--||..|+.+++|+|++ ++++++.. |..|.|.||+||..
T Consensus        83 egappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE-~gad~~Ia-nrhGhTcLmIa~yk  160 (615)
T KOG0508|consen   83 EGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVE-HGADPEIA-NRHGHTCLMIACYK  160 (615)
T ss_pred             CCCchhhHHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHH-cCCCCccc-ccCCCeeEEeeecc
Confidence            36689999999999999999999999999999999999999999999999999995 58999998 99999999999999


Q ss_pred             CCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHh
Q 041247           83 NCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHK  162 (507)
Q Consensus        83 g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  162 (507)
                      ||.+++++|++.  |+|+|.++..|+|+||.|+.+|++|++++|+.+|+.+  .+|..|.|||..|+..|+.++|+.|++
T Consensus       161 Gh~~I~qyLle~--gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i--~~d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  161 GHVDIAQYLLEQ--GADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKI--DVDGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             CchHHHHHHHHh--CCCcchhcccCchHHHhhhhcccHHHHHHHHhCCcee--eecCCCCchHHHHhhhcchHHHHHHhc
Confidence            999999999999  8999999999999999999999999999999999986  578889999999999999999999994


Q ss_pred             c
Q 041247          163 Q  163 (507)
Q Consensus       163 ~  163 (507)
                      .
T Consensus       237 ~  237 (615)
T KOG0508|consen  237 C  237 (615)
T ss_pred             C
Confidence            3

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.97  E-value=2.3e-30  Score=252.05  Aligned_cols=209  Identities=22%  Similarity=0.201  Sum_probs=167.8

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCC-CCCChHHHHHHHc
Q 041247           73 NTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPD-MDGTLPIVRAAAL  151 (507)
Q Consensus        73 ~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~-~~g~tpL~~A~~~  151 (507)
                      .+-.+.|+++|..+-|+.|++.. +.+++..|++|.|+||+||.+++.+++++|+++|+++ +..+ .-+.||||+|+++
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~-g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadv-n~~gG~l~stPLHWAar~  122 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESE-GESVNNPDREGVTLLHWAAINNRLDVARYLISHGADV-NAIGGVLGSTPLHWAARN  122 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhc-CcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCc-cccCCCCCCCcchHHHHc
Confidence            45567788888888888888775 6778888888888888888888888888888888887 4444 6677888888888


Q ss_pred             CcHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCccccccccccc
Q 041247          152 EQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTF  230 (507)
Q Consensus       152 g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~  230 (507)
                      |+..+|++|+++|+ +..+|.+|.+|+|.|+..++.-.+-+++.+. .+++.+|.+|+||||+|+.+|.           
T Consensus       123 G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~-~d~d~~D~~grTpLmwAaykg~-----------  190 (600)
T KOG0509|consen  123 GHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKG-ADIDLRDNNGRTPLMWAAYKGF-----------  190 (600)
T ss_pred             CcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhc-ccCCCcCCCCCCHHHHHHHhcc-----------
Confidence            88888888888888 7888888888888888888888888888884 7788899999999999999998           


Q ss_pred             cccccchhhhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCcccccccccCCC
Q 041247          231 FQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGY  310 (507)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~  310 (507)
                                       ...++.|++-++ .++.    .| +..|+||||.|+..|+.++++.|++.+++. +.+|.+|+
T Consensus       191 -----------------~~~v~~LL~f~a-~~~~----~d-~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~-d~~~~~g~  246 (600)
T KOG0509|consen  191 -----------------ALFVRRLLKFGA-SLLL----TD-DNHGNTPLHWAVVGGNLTAVKLLLEGGADL-DKTNTNGK  246 (600)
T ss_pred             -----------------cHHHHHHHHhcc-cccc----cc-cccCCchHHHHHhcCCcceEehhhhcCCcc-cccccCCC
Confidence                             444888887776 5554    22 233499999999999999999666666666 89999999


Q ss_pred             chHHHHHHh
Q 041247          311 TIFHVAVLN  319 (507)
Q Consensus       311 t~L~~A~~~  319 (507)
                      ||+++|.+.
T Consensus       247 tp~~LA~~~  255 (600)
T KOG0509|consen  247 TPFDLAQER  255 (600)
T ss_pred             CHHHHHHHh
Confidence            999999876

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.97  E-value=2e-31  Score=259.46  Aligned_cols=207  Identities=25%  Similarity=0.214  Sum_probs=192.4

Q ss_pred             cHHHHHHHcCCChhhHHHHhC-CCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCC
Q 041247            6 SGLGWVMTNGIKEAPRVLLSN-GGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANC   84 (507)
Q Consensus         6 t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~   84 (507)
                      .-+..|++.|+.+.|+.+++. |.+++..|.+|.|+||+||.+++.+++++|+++ ++++|..-..-+.||||+|+++|+
T Consensus        46 ~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~-gadvn~~gG~l~stPLHWAar~G~  124 (600)
T KOG0509|consen   46 DDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISH-GADVNAIGGVLGSTPLHWAARNGH  124 (600)
T ss_pred             hhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHc-CCCccccCCCCCCCcchHHHHcCc
Confidence            456789999999999999999 989999999999999999999999999988865 889998844778999999999999


Q ss_pred             HHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhcc
Q 041247           85 IDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQT  164 (507)
Q Consensus        85 ~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~  164 (507)
                      ..+|++|+++  |+|++.+|.+|.||||.|++.|+.-++-+|+.+++++ +.+|.+|+||||+|+.+|....++.|++.+
T Consensus       125 ~~vv~lLlqh--GAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~-d~~D~~grTpLmwAaykg~~~~v~~LL~f~  201 (600)
T KOG0509|consen  125 ISVVDLLLQH--GADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADI-DLRDNNGRTPLMWAAYKGFALFVRRLLKFG  201 (600)
T ss_pred             HHHHHHHHHc--CCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccC-CCcCCCCCCHHHHHHHhcccHHHHHHHHhc
Confidence            9999999999  8999999999999999999999999999999999886 999999999999999999998899999999


Q ss_pred             c-cccCC-CChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhc
Q 041247          165 K-NSLTD-DDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARK  217 (507)
Q Consensus       165 ~-~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~  217 (507)
                      + ....| ..|.||||.|+..|+..+++ |+.+.+...+.+|.+|+||+.+|.++
T Consensus       202 a~~~~~d~~~g~TpLHwa~~~gN~~~v~-Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  202 ASLLLTDDNHGNTPLHWAVVGGNLTAVK-LLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             ccccccccccCCchHHHHHhcCCcceEe-hhhhcCCcccccccCCCCHHHHHHHh
Confidence            9 66655 99999999999999999999 77776788888999999999999877

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.95  E-value=1.5e-27  Score=215.72  Aligned_cols=176  Identities=13%  Similarity=0.032  Sum_probs=137.3

Q ss_pred             ccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcC--CHHHHHHHHHcCCchhhcccc-cCCCcHH
Q 041247           35 SLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQAN--CIDFVKELLKMMSTEDLAKKN-KIGCTAF  111 (507)
Q Consensus        35 ~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g--~~e~v~~Ll~~~~~~~~~~~d-~~g~t~L  111 (507)
                      +.++||||.|+..|+.+.++.|++.    ++.. |..|.||||+|+..+  +.+++++|+++  |++++.++ ..|.|||
T Consensus        19 ~~~~~pL~~A~~~~~~~~vk~Li~~----~n~~-~~~g~TpLh~a~~~~~~~~eiv~~Ll~~--gadvn~~~~~~g~TpL   91 (209)
T PHA02859         19 YRYCNPLFYYVEKDDIEGVKKWIKF----VNDC-NDLYETPIFSCLEKDKVNVEILKFLIEN--GADVNFKTRDNNLSAL   91 (209)
T ss_pred             hccCcHHHHHHHhCcHHHHHHHHHh----hhcc-CccCCCHHHHHHHcCCCCHHHHHHHHHC--CCCCCccCCCCCCCHH
Confidence            3567888888888888888877753    4444 777888888888754  78888888888  78888876 4788888


Q ss_pred             HHHHHc---CcHHHHHHHHhcCCCCCccCCCCCChHHHHHHH--cCcHHHHHHHHhccc-cccCCCChhhHHHH-HHHcC
Q 041247          112 FYAAAS---GMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAA--LEQGQMVLLLHKQTK-NSLTDDDCIELLVQ-LIETG  184 (507)
Q Consensus       112 h~A~~~---g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~--~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~-A~~~~  184 (507)
                      |+|+..   ++.+++++|+++|+++ +.+|..|.||||.|+.  .++.+++++|++.++ .+.+|.+|.||||. ++..+
T Consensus        92 h~a~~~~~~~~~eiv~~Ll~~gadi-n~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~  170 (209)
T PHA02859         92 HHYLSFNKNVEPEILKILIDSGSSI-TEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHS  170 (209)
T ss_pred             HHHHHhCccccHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcC
Confidence            887653   4688888888888886 7788888888888775  357888888888887 77788888888885 45677


Q ss_pred             ChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCC
Q 041247          185 FYVVALQLLRDRPRLATKRAENEETALHVLARKDL  219 (507)
Q Consensus       185 ~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~  219 (507)
                      +.++++.|++. +.+++.+|..|+||||+|+.++-
T Consensus       171 ~~~iv~~Ll~~-Gadi~~~d~~g~tpl~la~~~~~  204 (209)
T PHA02859        171 DKKIFDFLTSL-GIDINETNKSGYNCYDLIKFRNL  204 (209)
T ss_pred             CHHHHHHHHHc-CCCCCCCCCCCCCHHHHHhhhhh
Confidence            88888888877 56677888888888888887654

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.95  E-value=2.4e-27  Score=214.43  Aligned_cols=175  Identities=8%  Similarity=0.050  Sum_probs=155.7

Q ss_pred             CcccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcC--CHHHHHHHHhhchhccccccCCCCCcHHHHHH
Q 041247            3 NILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNG--DWAVAKDIYDKYKVEIGQEITNLGNTALHVAA   80 (507)
Q Consensus         3 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g--~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa   80 (507)
                      .++||||+|+..|+.+.|+.|++.+   +..|..|.||||.|+..+  +.++++.|++. +++++.+.+..|.||||+|+
T Consensus        20 ~~~~pL~~A~~~~~~~~vk~Li~~~---n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~-gadvn~~~~~~g~TpLh~a~   95 (209)
T PHA02859         20 RYCNPLFYYVEKDDIEGVKKWIKFV---NDCNDLYETPIFSCLEKDKVNVEILKFLIEN-GADVNFKTRDNNLSALHHYL   95 (209)
T ss_pred             ccCcHHHHHHHhCcHHHHHHHHHhh---hccCccCCCHHHHHHHcCCCCHHHHHHHHHC-CCCCCccCCCCCCCHHHHHH
Confidence            4679999999999999999999864   456788999999999865  89999988864 88999882358999999988


Q ss_pred             Hc---CCHHHHHHHHHcCCchhhcccccCCCcHHHHHHH--cCcHHHHHHHHhcCCCCCccCCCCCChHHHH-HHHcCcH
Q 041247           81 QA---NCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAA--SGMVEIVEEMMKGNKDIAMVPDMDGTLPIVR-AAALEQG  154 (507)
Q Consensus        81 ~~---g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~--~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~-A~~~g~~  154 (507)
                      ..   ++.+++++|+++  |++++.+|..|.||||+|+.  .++.+++++|++.|+++ +.+|.+|.||||. |+..++.
T Consensus        96 ~~~~~~~~eiv~~Ll~~--gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadi-n~~d~~g~t~Lh~~a~~~~~~  172 (209)
T PHA02859         96 SFNKNVEPEILKILIDS--GSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSF-LNKDFDNNNILYSYILFHSDK  172 (209)
T ss_pred             HhCccccHHHHHHHHHC--CCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCc-ccccCCCCcHHHHHHHhcCCH
Confidence            64   479999999999  89999999999999999986  46899999999999997 8899999999996 5667899


Q ss_pred             HHHHHHHhccc-cccCCCChhhHHHHHHHcC
Q 041247          155 QMVLLLHKQTK-NSLTDDDCIELLVQLIETG  184 (507)
Q Consensus       155 ~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~  184 (507)
                      +++++|++.|. .+.+|..|.||||+|..++
T Consensus       173 ~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        173 KIFDFLTSLGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence            99999999999 8889999999999998875

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.95  E-value=1.1e-28  Score=249.75  Aligned_cols=304  Identities=18%  Similarity=0.182  Sum_probs=267.2

Q ss_pred             CcccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHc
Q 041247            3 NILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQA   82 (507)
Q Consensus         3 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~   82 (507)
                      |..|+|-.||..||.|.+++|+.+|++...+|..|.+||..|+..||..+|+.|+.. .++++.+.|..++|+|-+||..
T Consensus       756 n~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~-ha~veaQsdrtkdt~lSlacsg  834 (2131)
T KOG4369|consen  756 NIKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKA-HADVEAQSDRTKDTMLSLACSG  834 (2131)
T ss_pred             cccccccccccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhh-hhhhhhhcccccCceEEEecCC
Confidence            677999999999999999999999999999999999999999999999999988865 5788888799999999999999


Q ss_pred             CCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccC-CCCCChHHHHHHHcCcHHHHHHHH
Q 041247           83 NCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVP-DMDGTLPIVRAAALEQGQMVLLLH  161 (507)
Q Consensus        83 g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~-~~~g~tpL~~A~~~g~~~~v~~Ll  161 (507)
                      |+.++|++||..  +++-..+|-...|||.+|...|..++++.|+..|.++.... .+.|-.||++|..+|+.+.++.|+
T Consensus       835 gr~~vvelLl~~--gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll  912 (2131)
T KOG4369|consen  835 GRTRVVELLLNA--GANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLL  912 (2131)
T ss_pred             CcchHHHHHHHh--hccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHh
Confidence            999999999999  78877888889999999999999999999999999873332 356889999999999999999999


Q ss_pred             hccc-cc-cCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCccccccccccccccccchhh
Q 041247          162 KQTK-NS-LTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGA  239 (507)
Q Consensus       162 ~~~~-~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~  239 (507)
                      +.+. .+ ....+.+|.|-+|+..|+.+++..||.. ...+..+.+.|.|||.-++..|.                    
T Consensus       913 ~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~-~anvehRaktgltplme~AsgGy--------------------  971 (2131)
T KOG4369|consen  913 QPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAA-QANVEHRAKTGLTPLMEMASGGY--------------------  971 (2131)
T ss_pred             cccchhccccccccccceeeccccCcchHHHHHHHH-hhhhhhhcccCCcccchhhcCCc--------------------
Confidence            9998 43 3567778999999999999999999988 67788899999999999999999                    


Q ss_pred             hhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCcccccccccCCCchHHHHHHh
Q 041247          240 EKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIFHVAVLN  319 (507)
Q Consensus       240 ~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~  319 (507)
                              +++=+.|+..|+ +.+..  -..+..  .|+|-+++..||...|+.|+...+.+ +.+|++|+|+|.+|+--
T Consensus       972 --------vdvg~~li~~ga-d~nas--Pvp~T~--dtalti~a~kGh~kfv~~lln~~atv-~v~NkkG~T~Lwla~~G 1037 (2131)
T KOG4369|consen  972 --------VDVGNLLIAAGA-DTNAS--PVPNTW--DTALTIPANKGHTKFVPKLLNGDATV-RVPNKKGCTVLWLASAG 1037 (2131)
T ss_pred             --------cccchhhhhccc-ccccC--CCCCcC--CccceeecCCCchhhhHHhhCCccce-ecccCCCCcccchhccC
Confidence                    888888888888 77762  222222  68899999999999999999888877 88999999999999999


Q ss_pred             CchHHHHHHHhchhhhhhhhccccCCCCC
Q 041247          320 RLEELFKFIYDAKSIADLMVDSNDGEGEM  348 (507)
Q Consensus       320 ~~~~iv~~Ll~~ga~~~~~~~~~d~~g~t  348 (507)
                      |+...+.+|++++++.    ...|+..++
T Consensus      1038 g~lss~~il~~~~ad~----d~qdnr~~S 1062 (2131)
T KOG4369|consen 1038 GALSSCPILVSSVADA----DQQDNRTNS 1062 (2131)
T ss_pred             CccccchHHhhcccCh----hhhhccccc
Confidence            9999999999999988    445554444

>PHA02795 ankyrin-like protein; Provisional

Probab=99.95  E-value=2e-26  Score=223.66  Aligned_cols=238  Identities=13%  Similarity=0.004  Sum_probs=194.4

Q ss_pred             hHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccc------cccCCCCCcHHHHHHH--cCCHHHHHHH
Q 041247           20 PRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIG------QEITNLGNTALHVAAQ--ANCIDFVKEL   91 (507)
Q Consensus        20 v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~------~~~~~~g~t~Lh~Aa~--~g~~e~v~~L   91 (507)
                      -+|++++|++.+..+.+|     +|+..+..|+++.|+ .++.+++      .+ +..++|+||+|+.  .|+.|+|++|
T Consensus        65 ~~~~~~~~~~i~~~~~~~-----~~~~~~~k~~~~~l~-s~~~~~~~~~~~~~~-~~~~~~~L~~~~~n~~n~~eiV~~L  137 (437)
T PHA02795         65 YDYFRIHRDNIDQYIVDR-----LFAYITYKDIISALV-SKNYMEDIFSIIIKN-CNSVQDLLLYYLSNAYVEIDIVDFM  137 (437)
T ss_pred             HHHHHHcCcchhhhhhhh-----HHhhcchHHHHHHHH-hcccccchhhhhhhc-cccccHHHHHHHHhcCCCHHHHHHH
Confidence            378999998888887776     999999999999665 5577766      55 7789999999999  8999999999


Q ss_pred             HHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccC-----CCCCChHHHHHHHcCcHHHHHHHHhccc-
Q 041247           92 LKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVP-----DMDGTLPIVRAAALEQGQMVLLLHKQTK-  165 (507)
Q Consensus        92 l~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~-----~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-  165 (507)
                      +++  |++++..  ++.||+|.|+..|+.+++++|+++|++..+..     +..+.||+|.|+..++.+++++|+++|+ 
T Consensus       138 I~~--GADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GAD  213 (437)
T PHA02795        138 VDH--GAVIYKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIED  213 (437)
T ss_pred             HHC--CCCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCC
Confidence            999  8999884  45899999999999999999999998542332     2347899999999999999999999999 


Q ss_pred             cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCccccccccccccccccchhhhhhhhH
Q 041247          166 NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKEENK  245 (507)
Q Consensus       166 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (507)
                      .+.+|.+|.||||.|+..|+.+++++|++. +.+++.+|..|+||||+|+..|+..                 .   ...
T Consensus       214 IN~kD~~G~TpLh~Aa~~g~~eiVelLL~~-GAdIN~~d~~G~TpLh~Aa~~g~~~-----------------~---~~~  272 (437)
T PHA02795        214 INQLDAGGRTLLYRAIYAGYIDLVSWLLEN-GANVNAVMSNGYTCLDVAVDRGSVI-----------------A---RRE  272 (437)
T ss_pred             cCcCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcCCcc-----------------c---ccc
Confidence            899999999999999999999999999988 7888999999999999999998510                 0   001


Q ss_pred             HHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCccc
Q 041247          246 QALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADL  301 (507)
Q Consensus       246 ~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~  301 (507)
                      ...++++.|+++++ +++...         .+.+..  ...+.++++.++++...+
T Consensus       273 ~~~eIvelLL~~ga-dI~~~~---------~~~~~~--~~~n~~~ik~lI~y~~~l  316 (437)
T PHA02795        273 THLKILEILLREPL-SIDCIK---------LAILNN--TIENHDVIKLCIKYFMMV  316 (437)
T ss_pred             cHHHHHHHHHhCCC-CCCchh---------HHhhhc--ccchHHHHHHHHHHHHhc
Confidence            12689999999888 776521         122111  123678999988876543

>PHA02795 ankyrin-like protein; Provisional

Probab=99.94  E-value=3.1e-26  Score=222.38  Aligned_cols=235  Identities=13%  Similarity=0.016  Sum_probs=185.4

Q ss_pred             CCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhc------ccccCCCcHHHHHHH--cCc
Q 041247           48 GDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLA------KKNKIGCTAFFYAAA--SGM  119 (507)
Q Consensus        48 g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~------~~d~~g~t~Lh~A~~--~g~  119 (507)
                      .-.+++-.++..++.+++.. +.+|     +|+..+..|++++|+.+  +++++      .++.+++|+||+++.  .|+
T Consensus        59 ~~~~~~~~~~~~~~~~i~~~-~~~~-----~~~~~~~k~~~~~l~s~--~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~  130 (437)
T PHA02795         59 DPVDVLYDYFRIHRDNIDQY-IVDR-----LFAYITYKDIISALVSK--NYMEDIFSIIIKNCNSVQDLLLYYLSNAYVE  130 (437)
T ss_pred             CHHHHHHHHHHHcCcchhhh-hhhh-----HHhhcchHHHHHHHHhc--ccccchhhhhhhccccccHHHHHHHHhcCCC
Confidence            34455544455668888887 6665     99999999999999999  78877      788899999999998  899


Q ss_pred             HHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc-c-ccC-----CCChhhHHHHHHHcCChHHHHHH
Q 041247          120 VEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK-N-SLT-----DDDCIELLVQLIETGFYVVALQL  192 (507)
Q Consensus       120 ~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~-~~~-----~~~g~t~L~~A~~~~~~~~v~~L  192 (507)
                      .+++++|+++|+++ +..  ++.||+|.|+..|+.+++++|+++|+ . +..     +..+.+++|.|...++.++++.|
T Consensus       131 ~eiV~~LI~~GADI-n~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~L  207 (437)
T PHA02795        131 IDIVDFMVDHGAVI-YKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLC  207 (437)
T ss_pred             HHHHHHHHHCCCCC-CCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHH
Confidence            99999999999998 553  45899999999999999999999997 2 221     13467888888888889999999


Q ss_pred             HhcCchhhhhcccCCchHHHHHHhcCCccccccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhh
Q 041247          193 LRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLI  272 (507)
Q Consensus       193 l~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~  272 (507)
                      +++ +.+++.+|..|+||||+|+..|+                            .+++++|+++|+ +++.    .+. 
T Consensus       208 Is~-GADIN~kD~~G~TpLh~Aa~~g~----------------------------~eiVelLL~~GA-dIN~----~d~-  252 (437)
T PHA02795        208 IPY-IEDINQLDAGGRTLLYRAIYAGY----------------------------IDLVSWLLENGA-NVNA----VMS-  252 (437)
T ss_pred             HhC-cCCcCcCCCCCCCHHHHHHHcCC----------------------------HHHHHHHHHCCC-CCCC----cCC-
Confidence            988 67788889999999999999998                            889999998888 7775    333 


Q ss_pred             cCCChHHHHHHHcC--------cHHHHHHHHHHCcccccccccCCCchHHHHHHhCchHHHHHHHhchhhh
Q 041247          273 ARPTRLIFDAAKRG--------NVLFLLILIREYADLMRKCDENGYTIFHVAVLNRLEELFKFIYDAKSIA  335 (507)
Q Consensus       273 g~g~t~Lh~A~~~g--------~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~ga~~  335 (507)
                       .|.||||.|+.+|        +.++++.|+++|+++ +..+.   |++..  ...+.++++.++++....
T Consensus       253 -~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI-~~~~~---~~~~~--~~~n~~~ik~lI~y~~~l  316 (437)
T PHA02795        253 -NGYTCLDVAVDRGSVIARRETHLKILEILLREPLSI-DCIKL---AILNN--TIENHDVIKLCIKYFMMV  316 (437)
T ss_pred             -CCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCC-CchhH---Hhhhc--ccchHHHHHHHHHHHHhc
Confidence             3489999999888        468999999988887 44332   22211  122667888888777644

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.94  E-value=6.6e-24  Score=228.93  Aligned_cols=221  Identities=18%  Similarity=0.104  Sum_probs=173.0

Q ss_pred             CcccHHHHHHHcCCChhhHHHHhC--CCCCCCccccCCHHhH-HHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHH
Q 041247            3 NILSGLGWVMTNGIKEAPRVLLSN--GGANLSEDSLRRLKLY-RAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVA   79 (507)
Q Consensus         3 ~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~Lh-~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~A   79 (507)
                      .++.+++.|++.|+.+.++.++++  +.+.+..|..|.|||| .|+..++.++++.|++. +.    + +..|+||||.|
T Consensus        16 ~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~-g~----~-~~~G~T~Lh~A   89 (743)
T TIGR00870        16 DEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNL-SC----R-GAVGDTLLHAI   89 (743)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhC-CC----C-CCcChHHHHHH
Confidence            457899999999999999999999  7778888999999999 88888889999966654 43    3 78899999999


Q ss_pred             HHcCC---HHHHHHHHHcCCch-----hhc----ccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCC---------
Q 041247           80 AQANC---IDFVKELLKMMSTE-----DLA----KKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPD---------  138 (507)
Q Consensus        80 a~~g~---~e~v~~Ll~~~~~~-----~~~----~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~---------  138 (507)
                      +..++   .++++.+.+.. +.     ..+    ..+..|.||||+|+..|+.+++++|+++|+++ +.++         
T Consensus        90 ~~~~~~~v~~ll~~l~~~~-~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv-~~~~~~~~~~~~~  167 (743)
T TIGR00870        90 SLEYVDAVEAILLHLLAAF-RKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASV-PARACGDFFVKSQ  167 (743)
T ss_pred             HhccHHHHHHHHHHHhhcc-cccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCC-CcCcCCchhhcCC
Confidence            87322   23344444331 11     111    12356999999999999999999999999997 3332         


Q ss_pred             -----CCCChHHHHHHHcCcHHHHHHHHhccc-cccCCCChhhHHHHHHHcCC-----h----HHHHHHHh---cCc---
Q 041247          139 -----MDGTLPIVRAAALEQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGF-----Y----VVALQLLR---DRP---  197 (507)
Q Consensus       139 -----~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~-----~----~~v~~Ll~---~~~---  197 (507)
                           ..|+||||.|+..|+.+++++|++.++ .+..|..|+||||.|+..+.     .    .+.+.+++   ...   
T Consensus       168 ~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~  247 (743)
T TIGR00870       168 GVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSK  247 (743)
T ss_pred             CCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChH
Confidence                 358999999999999999999999998 88899999999999999872     1    23333332   211   


Q ss_pred             hhhhhcccCCchHHHHHHhcCCccccccccccccccccchhhhhhhhHHHHHHHHHHHHHHh
Q 041247          198 RLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTEVV  259 (507)
Q Consensus       198 ~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~  259 (507)
                      +..+..|.+|.||||+|+..|+                            .++++.+++...
T Consensus       248 el~~i~N~~g~TPL~~A~~~g~----------------------------~~l~~lLL~~~~  281 (743)
T TIGR00870       248 ELEVILNHQGLTPLKLAAKEGR----------------------------IVLFRLKLAIKY  281 (743)
T ss_pred             hhhhhcCCCCCCchhhhhhcCC----------------------------ccHHHHHHHHHH
Confidence            1124678999999999999999                            899999997654

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.93  E-value=4.1e-26  Score=192.85  Aligned_cols=201  Identities=20%  Similarity=0.182  Sum_probs=183.4

Q ss_pred             CcccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHc
Q 041247            3 NILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQA   82 (507)
Q Consensus         3 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~   82 (507)
                      +|+++++.|+-.|+.+.+...+.+|+..+..+-.+++|+.+++...+.+.+..+.+   ..+|.. |+.|.|||.+|++.
T Consensus        95 ~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhql~L~~~~~~~~---n~VN~~-De~GfTpLiWAaa~  170 (296)
T KOG0502|consen   95 EGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVN---NKVNAC-DEFGFTPLIWAAAK  170 (296)
T ss_pred             hhhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHHHHHHHHHHHHhh---ccccCc-cccCchHhHHHHhc
Confidence            48899999999999999999999999999999999999999999999888774443   357787 99999999999999


Q ss_pred             CCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHh
Q 041247           83 NCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHK  162 (507)
Q Consensus        83 g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  162 (507)
                      |++++|++|++.  |++++...++..++|.+|++.|..++|++|+++++++ +.-|.+|-|||.+|++.||.++++.|++
T Consensus       171 G~i~vV~fLL~~--GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdV-NvyDwNGgTpLlyAvrgnhvkcve~Ll~  247 (296)
T KOG0502|consen  171 GHIPVVQFLLNS--GADPDALGKYRESALSLATRGGYTDIVELLLTREVDV-NVYDWNGGTPLLYAVRGNHVKCVESLLN  247 (296)
T ss_pred             CchHHHHHHHHc--CCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCc-ceeccCCCceeeeeecCChHHHHHHHHh
Confidence            999999999999  8999999999999999999999999999999999998 8999999999999999999999999999


Q ss_pred             ccc-cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHH
Q 041247          163 QTK-NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALH  212 (507)
Q Consensus       163 ~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh  212 (507)
                      .|+ ....+..|.+++..|+..|+- +++..+++ -.+...+|..-++|+|
T Consensus       248 sGAd~t~e~dsGy~~mdlAValGyr-~Vqqvie~-h~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  248 SGADVTQEDDSGYWIMDLAVALGYR-IVQQVIEK-HALKLCQDSEKRTPLH  296 (296)
T ss_pred             cCCCcccccccCCcHHHHHHHhhhH-HHHHHHHH-HHHHHhhcccCCCCCC
Confidence            999 888999999999999999976 88888887 4566677877788775

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.92  E-value=3e-25  Score=218.85  Aligned_cols=259  Identities=21%  Similarity=0.174  Sum_probs=215.5

Q ss_pred             ccHHHHHHHcCCChhhHHHHhCCC-------------CCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCC
Q 041247            5 LSGLGWVMTNGIKEAPRVLLSNGG-------------ANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNL   71 (507)
Q Consensus         5 ~t~L~~A~~~g~~~~v~~Ll~~g~-------------~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~   71 (507)
                      .+-|..|++.|+.+.+..+++...             ..+..|.+|.|.||.|+.+|+.++++.+++ +.+.++.. |..
T Consensus         4 ~qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle-~ea~ldl~-d~k   81 (854)
T KOG0507|consen    4 KQELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLD-YEALLDLC-DTK   81 (854)
T ss_pred             hhhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhc-chhhhhhh-hcc
Confidence            356788999999999999998632             223457899999999999999999996665 46667777 788


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHc
Q 041247           72 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAAL  151 (507)
Q Consensus        72 g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~  151 (507)
                      |.+|||+|+..|+.|+++.++..  +..+|..+..|.||||.|+..||.|++.+|++++++ +..+|+.+.|+|..|++.
T Consensus        82 g~~plhlaaw~g~~e~vkmll~q--~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~ad-p~i~nns~~t~ldlA~qf  158 (854)
T KOG0507|consen   82 GILPLHLAAWNGNLEIVKMLLLQ--TDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNAD-PFIRNNSKETVLDLASRF  158 (854)
T ss_pred             CcceEEehhhcCcchHHHHHHhc--ccCCCcccccCcCccchhhhhcchHHHHHHHhcCCC-ccccCcccccHHHHHHHh
Confidence            99999999999999999999998  688999999999999999999999999999999999 588999999999999999


Q ss_pred             CcHHHHHHHHhccccccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCcccccccccccc
Q 041247          152 EQGQMVLLLHKQTKNSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFF  231 (507)
Q Consensus       152 g~~~~v~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~  231 (507)
                      |+.++++.|+...-...                      ++. ..+  -..++-.+-+|||.|+++|+            
T Consensus       159 gr~~Vvq~ll~~~~~~~----------------------~~~-~~~--~~~~~~~~~~plHlaakngh------------  201 (854)
T KOG0507|consen  159 GRAEVVQMLLQKKFPVQ----------------------SSL-RVG--DIKRPFPAIYPLHLAAKNGH------------  201 (854)
T ss_pred             hhhHHHHHHhhhccchh----------------------hcc-cCC--CCCCCCCCcCCcchhhhcch------------
Confidence            99999999998621100                      011 112  22567788999999999999            


Q ss_pred             ccccchhhhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCcccccccccCCCc
Q 041247          232 QRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYT  311 (507)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t  311 (507)
                                      .++++.|++.|. ++|..    ...   -|+||.|+-.|..++|+.|++.|.+. ..+|.+|+|
T Consensus       202 ----------------~~~~~~ll~ag~-din~~----t~~---gtalheaalcgk~evvr~ll~~gin~-h~~n~~~qt  256 (854)
T KOG0507|consen  202 ----------------VECMQALLEAGF-DINYT----TED---GTALHEAALCGKAEVVRFLLEIGINT-HIKNQHGQT  256 (854)
T ss_pred             ----------------HHHHHHHHhcCC-Ccccc----ccc---chhhhhHhhcCcchhhhHHHhhcccc-ccccccchH
Confidence                            999999999998 87752    222   69999999999999999999999998 899999999


Q ss_pred             hHHHHHHh---CchHHHHHHHh
Q 041247          312 IFHVAVLN---RLEELFKFIYD  330 (507)
Q Consensus       312 ~L~~A~~~---~~~~iv~~Ll~  330 (507)
                      +|++-...   ...+++-.+.+
T Consensus       257 aldil~d~~~~~~~ei~ga~~~  278 (854)
T KOG0507|consen  257 ALDIIIDLQENRRYEIAGAVKN  278 (854)
T ss_pred             HHHHHHhcchhhhhhhhhhhhc
Confidence            99987753   44555555443

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.92  E-value=1.8e-24  Score=233.22  Aligned_cols=253  Identities=16%  Similarity=0.095  Sum_probs=187.6

Q ss_pred             ccCCHHhHHHHHcCCHHHHHHHHhhc-hhccccccCCCCCcHHH-HHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHH
Q 041247           35 SLRRLKLYRAALNGDWAVAKDIYDKY-KVEIGQEITNLGNTALH-VAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFF  112 (507)
Q Consensus        35 ~~g~t~Lh~Aa~~g~~~~v~~ll~~~-~~~i~~~~~~~g~t~Lh-~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh  112 (507)
                      ..++..++.|++.|+.+.++.++++. +.+++.. |..|+|||| .|+..++.++++.|+++  ++    .+..|+||||
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~-d~~G~t~Lh~~A~~~~~~eiv~lLl~~--g~----~~~~G~T~Lh   87 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVYRDLEEPKKLNINCP-DRLGRSALFVAAIENENLELTELLLNL--SC----RGAVGDTLLH   87 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHhccccccCCCCc-CccchhHHHHHHHhcChHHHHHHHHhC--CC----CCCcChHHHH
Confidence            45678999999999999999888652 5677777 899999999 89999999999999998  44    6788999999


Q ss_pred             HHHHc---CcHHHHHHHHhcCCCC---------CccCCCCCChHHHHHHHcCcHHHHHHHHhccc-cccCC---------
Q 041247          113 YAAAS---GMVEIVEEMMKGNKDI---------AMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK-NSLTD---------  170 (507)
Q Consensus       113 ~A~~~---g~~~iv~~Ll~~~~~~---------~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~---------  170 (507)
                      .|+..   +..++++.+.+.+++.         ....+..|.||||+|+.+|+.++++.|+++|+ .+.++         
T Consensus        88 ~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~  167 (743)
T TIGR00870        88 AISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQ  167 (743)
T ss_pred             HHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCC
Confidence            99873   2334455555544321         01223569999999999999999999999998 44322         


Q ss_pred             -----CChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCccccccccccccccccchhhhhhhhH
Q 041247          171 -----DDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKEENK  245 (507)
Q Consensus       171 -----~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (507)
                           ..|++|||.|+..|+.++++.|+++ +.+++.+|..|+||||+|+..+....                   ....
T Consensus       168 ~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~-gadin~~d~~g~T~Lh~A~~~~~~~~-------------------~~~~  227 (743)
T TIGR00870       168 GVDSFYHGESPLNAAACLGSPSIVALLSED-PADILTADSLGNTLLHLLVMENEFKA-------------------EYEE  227 (743)
T ss_pred             CCCcccccccHHHHHHHhCCHHHHHHHhcC-CcchhhHhhhhhHHHHHHHhhhhhhH-------------------HHHH
Confidence                 3589999999999999999999987 77889999999999999999874100                   0000


Q ss_pred             HHHHHHHHHHHHHhhccchh---hHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCcccccccccCCCchHHHHHH
Q 041247          246 QALELVESLWTEVVLSSESV---SEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIFHVAVL  318 (507)
Q Consensus       246 ~~~~~v~~Ll~~~~~~~~~~---~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~  318 (507)
                      ...++.+.+++.+. .....   .+..  |..|.||||.|++.|+.++++.|++.+.+. .......+.|.+.+..
T Consensus       228 l~~~~~~~l~~ll~-~~~~~~el~~i~--N~~g~TPL~~A~~~g~~~l~~lLL~~~~~~-kk~~a~~~~~~~~~~~  299 (743)
T TIGR00870       228 LSCQMYNFALSLLD-KLRDSKELEVIL--NHQGLTPLKLAAKEGRIVLFRLKLAIKYKQ-KKFVAWPNGQQLLSLY  299 (743)
T ss_pred             HHHHHHHHHHHHHh-ccCChHhhhhhc--CCCCCCchhhhhhcCCccHHHHHHHHHHhc-ceeeccCcchHhHhhh
Confidence            01334455555554 33221   1223  344599999999999999999999865543 3334556666665543

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.92  E-value=1.6e-25  Score=189.35  Aligned_cols=232  Identities=19%  Similarity=0.198  Sum_probs=124.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHc
Q 041247           72 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAAL  151 (507)
Q Consensus        72 g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~  151 (507)
                      |+.-+-.+.+.|+.+++...+... +..+...|.+|+.++|.++-.|+.+.+..++..+... +..+..+.+|+.+++..
T Consensus        62 ge~~~~~~~~s~nsd~~v~s~~~~-~~~~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~rg-nevs~~p~s~~slsVhq  139 (296)
T KOG0502|consen   62 GESLLTVAVRSGNSDVAVQSAQLD-PDAIDETDPEGWSALLVAAPCGSVDKVSTTLTNGARG-NEVSLMPWSPLSLSVHQ  139 (296)
T ss_pred             CCcccchhhhcCCcHHHHHhhccC-CCCCCCCCchhhhhhhhcCCCCCcceeeeeecccccC-CccccccCChhhHHHHH
Confidence            333334444444444444444332 2223333334444444444444444444444444443 44444444444444444


Q ss_pred             CcHHHHHHHHhccccccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCcccccccccccc
Q 041247          152 EQGQMVLLLHKQTKNSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFF  231 (507)
Q Consensus       152 g~~~~v~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~  231 (507)
                      .+.+.+..+.++. .+..|+.|.|||..|+..|+.+++++||++ +.++....+..+++|.+|++.|.            
T Consensus       140 l~L~~~~~~~~n~-VN~~De~GfTpLiWAaa~G~i~vV~fLL~~-GAdp~~lgk~resALsLAt~ggy------------  205 (296)
T KOG0502|consen  140 LHLDVVDLLVNNK-VNACDEFGFTPLIWAAAKGHIPVVQFLLNS-GADPDALGKYRESALSLATRGGY------------  205 (296)
T ss_pred             HHHHHHHHHhhcc-ccCccccCchHhHHHHhcCchHHHHHHHHc-CCChhhhhhhhhhhHhHHhcCCh------------
Confidence            4444433333222 344444444444444444444444444444 33344444445556666666655            


Q ss_pred             ccccchhhhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCcccccccccCCCc
Q 041247          232 QRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYT  311 (507)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t  311 (507)
                                      .++|+.|+++.. ++|.    .|.+|  -|||.+|++.|+.++++.|+..|+++ +..|..|++
T Consensus       206 ----------------tdiV~lLL~r~v-dVNv----yDwNG--gTpLlyAvrgnhvkcve~Ll~sGAd~-t~e~dsGy~  261 (296)
T KOG0502|consen  206 ----------------TDIVELLLTREV-DVNV----YDWNG--GTPLLYAVRGNHVKCVESLLNSGADV-TQEDDSGYW  261 (296)
T ss_pred             ----------------HHHHHHHHhcCC-Ccce----eccCC--CceeeeeecCChHHHHHHHHhcCCCc-ccccccCCc
Confidence                            566666665544 4433    55555  67777777777777777777777777 777777777


Q ss_pred             hHHHHHHhCchHHHHHHHhchhhhhhhhccccCCCCC
Q 041247          312 IFHVAVLNRLEELFKFIYDAKSIADLMVDSNDGEGEM  348 (507)
Q Consensus       312 ~L~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~d~~g~t  348 (507)
                      +++.|+..|+. +|+..+++-+.+    ..+|..-++
T Consensus       262 ~mdlAValGyr-~Vqqvie~h~lk----l~Q~~~~~~  293 (296)
T KOG0502|consen  262 IMDLAVALGYR-IVQQVIEKHALK----LCQDSEKRT  293 (296)
T ss_pred             HHHHHHHhhhH-HHHHHHHHHHHH----HhhcccCCC
Confidence            77777777766 667777666655    555554443

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.91  E-value=3e-24  Score=211.90  Aligned_cols=239  Identities=21%  Similarity=0.171  Sum_probs=197.9

Q ss_pred             HHhHHHHHcCCHHHHHHHHhhc------------hhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccC
Q 041247           39 LKLYRAALNGDWAVAKDIYDKY------------KVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKI  106 (507)
Q Consensus        39 t~Lh~Aa~~g~~~~v~~ll~~~------------~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~  106 (507)
                      +-+..|++.|+.+.+..+|+..            +..++.+ |.+|.|+||.|+.+|+.++++.|+++  .+.++..|..
T Consensus         5 qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~q-d~~gfTalhha~Lng~~~is~llle~--ea~ldl~d~k   81 (854)
T KOG0507|consen    5 QELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQ-DYSGFTLLHHAVLNGQNQISKLLLDY--EALLDLCDTK   81 (854)
T ss_pred             hhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCcccccc-CccchhHHHHHHhcCchHHHHHHhcc--hhhhhhhhcc
Confidence            4577899999999999888752            2345555 78899999999999999999999998  6788888899


Q ss_pred             CCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc-cccCCCChhhHHHHHHHcCC
Q 041247          107 GCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGF  185 (507)
Q Consensus       107 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~  185 (507)
                      |.+|||+|+..|+.|+++.++.++.. .+..+-+|.||||.|+..|+.+++.+|+++++ ....+..+.|++.+|++.|.
T Consensus        82 g~~plhlaaw~g~~e~vkmll~q~d~-~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr  160 (854)
T KOG0507|consen   82 GILPLHLAAWNGNLEIVKMLLLQTDI-LNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGR  160 (854)
T ss_pred             CcceEEehhhcCcchHHHHHHhcccC-CCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhh
Confidence            99999999999999999999988844 48888899999999999999999999999998 77888889999999999999


Q ss_pred             hHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCccccccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhccchh
Q 041247          186 YVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSESV  265 (507)
Q Consensus       186 ~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~  265 (507)
                      .++++.|++. .-.....+           ..|.                                              
T Consensus       161 ~~Vvq~ll~~-~~~~~~~~-----------~~~~----------------------------------------------  182 (854)
T KOG0507|consen  161 AEVVQMLLQK-KFPVQSSL-----------RVGD----------------------------------------------  182 (854)
T ss_pred             hHHHHHHhhh-ccchhhcc-----------cCCC----------------------------------------------
Confidence            9999988877 11111100           0010                                              


Q ss_pred             hHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCcccccccccCCCchHHHHHHhCchHHHHHHHhchhhhhhhhccccCC
Q 041247          266 SEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIFHVAVLNRLEELFKFIYDAKSIADLMVDSNDGE  345 (507)
Q Consensus       266 ~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~d~~  345 (507)
                       ...+..+  .+|||.|+++|+.++++.|++.|.++ |...++| |+||.|+..|..++|++|++.|...    ..+|.+
T Consensus       183 -~~~~~~~--~~plHlaakngh~~~~~~ll~ag~di-n~~t~~g-talheaalcgk~evvr~ll~~gin~----h~~n~~  253 (854)
T KOG0507|consen  183 -IKRPFPA--IYPLHLAAKNGHVECMQALLEAGFDI-NYTTEDG-TALHEAALCGKAEVVRFLLEIGINT----HIKNQH  253 (854)
T ss_pred             -CCCCCCC--cCCcchhhhcchHHHHHHHHhcCCCc-ccccccc-hhhhhHhhcCcchhhhHHHhhcccc----cccccc
Confidence             0112223  89999999999999999999999998 6665555 8999999999999999999999987    788999


Q ss_pred             CCC
Q 041247          346 GEM  348 (507)
Q Consensus       346 g~t  348 (507)
                      |+|
T Consensus       254 ~qt  256 (854)
T KOG0507|consen  254 GQT  256 (854)
T ss_pred             chH
Confidence            998

>PF13962 PGG: Domain of unknown function

Probab=99.91  E-value=4.3e-24  Score=171.98  Aligned_cols=103  Identities=41%  Similarity=0.643  Sum_probs=92.4

Q ss_pred             ccchhHHHHHHHHHHHHHhhhcCCCCCCCC---CCccccccCc-ceeehHhHhHHHHHHHHHHHHHHHhhccccchhhhH
Q 041247          359 NASSYMIVATLIVALVFGAAITVPGGNKED---VGLPFLRHKT-SFKVFAVSNVISLVASSVSIVNFLSILAPRYAEEDF  434 (507)
Q Consensus       359 ~~~s~~vva~LiatvtFaa~~t~Pgg~~~~---~G~~~~~~~~-~f~~F~~~~~~a~~~S~~~~~~~~~~~~~~~~~~~~  434 (507)
                      ++|+++|||+|||||||+|++|||||+++|   .|+|++.+++ .|++|+++|++||++|+++++++++.+      .++
T Consensus         7 ~~~~llVvAtLIATvtF~A~~tpPGG~~~~~~~~G~~il~~~~~~f~~F~~~nt~af~~S~~~i~~l~~~~------~~~   80 (113)
T PF13962_consen    7 TRNSLLVVATLIATVTFQAAFTPPGGYWQDDDDAGTPILAKKPSAFKAFLISNTIAFFSSLAAIFLLISGL------DDF   80 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCCchhccccchhhhHHHHHHHHHHHHHHHHHHHHHHh------hhH
Confidence            789999999999999999999999999775   7999998888 999999999999999999998877423      445


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 041247          435 LYLLSRKLLFGLATLFIAIAAMMVVFSATRFIV  467 (507)
Q Consensus       435 ~~~~~~~l~~~~~~l~~s~~~m~~af~~~~~~v  467 (507)
                      .+..++.+.++..++++++.+|++||++|+|+|
T Consensus        81 ~~~~~~~~~~~~~~~~~a~~~~~~Af~~g~~~v  113 (113)
T PF13962_consen   81 RRFLRRYLLIASVLMWIALISMMVAFAAGIYLV  113 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            566667788999999999999999999999986

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.91  E-value=2.3e-23  Score=225.90  Aligned_cols=194  Identities=18%  Similarity=0.116  Sum_probs=163.4

Q ss_pred             CCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 041247           15 GIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKM   94 (507)
Q Consensus        15 g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~   94 (507)
                      ...++-+.+.+++..  ..+..+.++||.||..|+.++++.+++ .+.+++.. |..|+||||+|+..|+.++++.|+++
T Consensus       505 ~~l~v~~ll~~~~~~--~~~~~~~~~L~~Aa~~g~~~~l~~Ll~-~G~d~n~~-d~~G~TpLh~Aa~~g~~~~v~~Ll~~  580 (823)
T PLN03192        505 HDLNVGDLLGDNGGE--HDDPNMASNLLTVASTGNAALLEELLK-AKLDPDIG-DSKGRTPLHIAASKGYEDCVLVLLKH  580 (823)
T ss_pred             ccccHHHHHhhcccc--cCCccchhHHHHHHHcCCHHHHHHHHH-CCCCCCCC-CCCCCCHHHHHHHcChHHHHHHHHhc
Confidence            344444555555432  234457789999999999999998885 48888888 99999999999999999999999998


Q ss_pred             CCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc-cccCCCCh
Q 041247           95 MSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK-NSLTDDDC  173 (507)
Q Consensus        95 ~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g  173 (507)
                        |++++.+|.+|+||||+|+..|+.+++++|++.++..   ....+.+|||.|+.+|+.++++.|+++|+ .+.+|.+|
T Consensus       581 --gadin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~---~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G  655 (823)
T PLN03192        581 --ACNVHIRDANGNTALWNAISAKHHKIFRILYHFASIS---DPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQG  655 (823)
T ss_pred             --CCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCccc---CcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCC
Confidence              8999999999999999999999999999999877653   23457789999999999999999999999 88899999


Q ss_pred             hhHHHHHHHcCChHHHHHHHhcCchhhhhcccCC-chHHHHHHhcC
Q 041247          174 IELLVQLIETGFYVVALQLLRDRPRLATKRAENE-ETALHVLARKD  218 (507)
Q Consensus       174 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g-~t~Lh~A~~~~  218 (507)
                      .||||.|+..|+.++++.|+++ +.+++..|..| .||++.+....
T Consensus       656 ~TpLh~A~~~g~~~iv~~Ll~~-GAdv~~~~~~g~~t~~~l~~~~~  700 (823)
T PLN03192        656 ATALQVAMAEDHVDMVRLLIMN-GADVDKANTDDDFSPTELRELLQ  700 (823)
T ss_pred             CCHHHHHHHCCcHHHHHHHHHc-CCCCCCCCCCCCCCHHHHHHHHH
Confidence            9999999999999999999988 67777888877 88888765433

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.91  E-value=1.4e-23  Score=227.49  Aligned_cols=173  Identities=20%  Similarity=0.087  Sum_probs=157.5

Q ss_pred             CcccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHc
Q 041247            3 NILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQA   82 (507)
Q Consensus         3 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~   82 (507)
                      ++.++||.||..|+.++++.|+++|.+++..|..|.||||.|+..|+.++++.|++ ++++++.+ |.+|+||||.|+..
T Consensus       524 ~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~-~gadin~~-d~~G~TpL~~A~~~  601 (823)
T PLN03192        524 NMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLK-HACNVHIR-DANGNTALWNAISA  601 (823)
T ss_pred             cchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHh-cCCCCCCc-CCCCCCHHHHHHHh
Confidence            45689999999999999999999999999999999999999999999999998776 58999998 99999999999999


Q ss_pred             CCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHh
Q 041247           83 NCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHK  162 (507)
Q Consensus        83 g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  162 (507)
                      |+.+++++|++.  ++..+  ...|.++||.|+..|+.++++.|+++|+++ +.+|.+|.||||.|+..|+.+++++|++
T Consensus       602 g~~~iv~~L~~~--~~~~~--~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadi-n~~d~~G~TpLh~A~~~g~~~iv~~Ll~  676 (823)
T PLN03192        602 KHHKIFRILYHF--ASISD--PHAAGDLLCTAAKRNDLTAMKELLKQGLNV-DSEDHQGATALQVAMAEDHVDMVRLLIM  676 (823)
T ss_pred             CCHHHHHHHHhc--CcccC--cccCchHHHHHHHhCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCcHHHHHHHHH
Confidence            999999999987  44433  345779999999999999999999999997 8999999999999999999999999999


Q ss_pred             ccc-cccCCCCh-hhHHHHHHH
Q 041247          163 QTK-NSLTDDDC-IELLVQLIE  182 (507)
Q Consensus       163 ~~~-~~~~~~~g-~t~L~~A~~  182 (507)
                      +|+ .+..+..| .+|.+.+..
T Consensus       677 ~GAdv~~~~~~g~~t~~~l~~~  698 (823)
T PLN03192        677 NGADVDKANTDDDFSPTELREL  698 (823)
T ss_pred             cCCCCCCCCCCCCCCHHHHHHH
Confidence            999 77777777 888876644

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.88  E-value=4.8e-23  Score=209.21  Aligned_cols=288  Identities=17%  Similarity=0.139  Sum_probs=243.1

Q ss_pred             cccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcc-cccCCCcHHH
Q 041247           34 DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAK-KNKIGCTAFF  112 (507)
Q Consensus        34 ~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~-~d~~g~t~Lh  112 (507)
                      ..+-.|+|..||..||.|+++.++. .++++..+ |+.|.+||.+|+..||..+|+.|+++  .++++. .|+.++|+|-
T Consensus       754 e~n~~t~LT~acaggh~e~vellv~-rganiehr-dkkgf~plImaatagh~tvV~~llk~--ha~veaQsdrtkdt~lS  829 (2131)
T KOG4369|consen  754 EPNIKTNLTSACAGGHREEVELLVV-RGANIEHR-DKKGFVPLIMAATAGHITVVQDLLKA--HADVEAQSDRTKDTMLS  829 (2131)
T ss_pred             CccccccccccccCccHHHHHHHHH-hccccccc-ccccchhhhhhcccCchHHHHHHHhh--hhhhhhhcccccCceEE
Confidence            3466889999999999999997765 48899998 99999999999999999999999998  688765 4788999999


Q ss_pred             HHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc-ccc--CCCChhhHHHHHHHcCChHHH
Q 041247          113 YAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK-NSL--TDDDCIELLVQLIETGFYVVA  189 (507)
Q Consensus       113 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~--~~~~g~t~L~~A~~~~~~~~v  189 (507)
                      +||..|+.++|++|+..|++- ..++....|||.+|...|+.+++..|+..|. ++.  -.+.|-.||.+|..+|+.+.+
T Consensus       830 lacsggr~~vvelLl~~gank-ehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at  908 (2131)
T KOG4369|consen  830 LACSGGRTRVVELLLNAGANK-EHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAAT  908 (2131)
T ss_pred             EecCCCcchHHHHHHHhhccc-cccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHH
Confidence            999999999999999999996 8899999999999999999999999999997 443  457788999999999999999


Q ss_pred             HHHHhcCchhhhh-cccCCchHHHHHHhcCCccccccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhccchhhHH
Q 041247          190 LQLLRDRPRLATK-RAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEI  268 (507)
Q Consensus       190 ~~Ll~~~~~~~~~-~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~  268 (507)
                      +.|++. +.++|. ..-+-+|+|-+|+-.|+                            .+++..|+...+ ++.     
T Consensus       909 ~~ll~~-gsdiNaqIeTNrnTaltla~fqgr----------------------------~evv~lLLa~~a-nve-----  953 (2131)
T KOG4369|consen  909 LSLLQP-GSDINAQIETNRNTALTLALFQGR----------------------------PEVVFLLLAAQA-NVE-----  953 (2131)
T ss_pred             HHHhcc-cchhccccccccccceeeccccCc----------------------------chHHHHHHHHhh-hhh-----
Confidence            999998 444544 45667899999999999                            899999998766 333     


Q ss_pred             hhhhcCCChHHHHHHHcCcHHHHHHHHHHCccccccc--ccCCCchHHHHHHhCchHHHHHHHhchhhhhhhhccccCCC
Q 041247          269 SKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKC--DENGYTIFHVAVLNRLEELFKFIYDAKSIADLMVDSNDGEG  346 (507)
Q Consensus       269 ~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~--d~~g~t~L~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~d~~g  346 (507)
                       -+...|-|||+.++..|.+|+=+.|+..|+|. |..  -....|+|-+++..||.+.++.|+...+-+    ..++++|
T Consensus       954 -hRaktgltplme~AsgGyvdvg~~li~~gad~-nasPvp~T~dtalti~a~kGh~kfv~~lln~~atv----~v~NkkG 1027 (2131)
T KOG4369|consen  954 -HRAKTGLTPLMEMASGGYVDVGNLLIAAGADT-NASPVPNTWDTALTIPANKGHTKFVPKLLNGDATV----RVPNKKG 1027 (2131)
T ss_pred             -hhcccCCcccchhhcCCccccchhhhhccccc-ccCCCCCcCCccceeecCCCchhhhHHhhCCccce----ecccCCC
Confidence             33444599999999999999999999999997 443  346779999999999999999999887776    7899999


Q ss_pred             CCcCCCCCccccccchhHHHHHHHH
Q 041247          347 EMFDPPLYMDIDNASSYMIVATLIV  371 (507)
Q Consensus       347 ~t~~~~~~~~~k~~~s~~vva~Lia  371 (507)
                      +|   +.|.+. ....+.++-.|+.
T Consensus      1028 ~T---~Lwla~-~Gg~lss~~il~~ 1048 (2131)
T KOG4369|consen 1028 CT---VLWLAS-AGGALSSCPILVS 1048 (2131)
T ss_pred             Cc---ccchhc-cCCccccchHHhh
Confidence            99   344432 2333444444443

>PHA02741 hypothetical protein; Provisional

Probab=99.86  E-value=2.9e-21  Score=168.98  Aligned_cols=129  Identities=18%  Similarity=0.203  Sum_probs=98.8

Q ss_pred             ccccCCHHhHHHHHcCCHHHHHHHHhh-----chhccccccCCCCCcHHHHHHHcCC----HHHHHHHHHcCCchhhccc
Q 041247           33 EDSLRRLKLYRAALNGDWAVAKDIYDK-----YKVEIGQEITNLGNTALHVAAQANC----IDFVKELLKMMSTEDLAKK  103 (507)
Q Consensus        33 ~~~~g~t~Lh~Aa~~g~~~~v~~ll~~-----~~~~i~~~~~~~g~t~Lh~Aa~~g~----~e~v~~Ll~~~~~~~~~~~  103 (507)
                      +|..|.||||+|+..|+.++++.++..     .+.+++.+ |..|+||||+|+..|+    .+++++|++.  +++++.+
T Consensus        17 ~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~-d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~--gadin~~   93 (169)
T PHA02741         17 KNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNAT-DDAGQMCIHIAAEKHEAQLAAEIIDHLIEL--GADINAQ   93 (169)
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhcc-CCCCCcHHHHHHHcCChHHHHHHHHHHHHc--CCCCCCC
Confidence            466788888888888888888866432     24667766 7778888888888887    4777888877  7778877


Q ss_pred             cc-CCCcHHHHHHHcCcHHHHHHHHh-cCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc
Q 041247          104 NK-IGCTAFFYAAASGMVEIVEEMMK-GNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK  165 (507)
Q Consensus       104 d~-~g~t~Lh~A~~~g~~~iv~~Ll~-~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~  165 (507)
                      |. .|+||||+|+..++.+++++|++ .++++ +.+|.+|.||||+|+..|+.++++.|++.++
T Consensus        94 ~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~-~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~  156 (169)
T PHA02741         94 EMLEGDTALHLAAHRRDHDLAEWLCCQPGIDL-HFCNADNKSPFELAIDNEDVAMMQILREIVA  156 (169)
T ss_pred             CcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-CcCCCCCCCHHHHHHHCCCHHHHHHHHHHHH
Confidence            74 78888888888888888888886 47775 7778888888888888888888888887655

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.86  E-value=1.6e-21  Score=186.59  Aligned_cols=229  Identities=20%  Similarity=0.182  Sum_probs=178.3

Q ss_pred             HHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcC
Q 041247           39 LKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASG  118 (507)
Q Consensus        39 t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g  118 (507)
                      -.+.-|+..|+.+-++.+|.. +..++.. +.+|.|+||-+|...+.+||++|+++  ++++|..|..|+||||.|+..|
T Consensus        42 a~~l~A~~~~d~~ev~~ll~~-ga~~~~~-n~DglTalhq~~id~~~e~v~~l~e~--ga~Vn~~d~e~wtPlhaaascg  117 (527)
T KOG0505|consen   42 AVFLEACSRGDLEEVRKLLNR-GASPNLC-NVDGLTALHQACIDDNLEMVKFLVEN--GANVNAQDNEGWTPLHAAASCG  117 (527)
T ss_pred             HHHHhccccccHHHHHHHhcc-CCCcccc-CCccchhHHHHHhcccHHHHHHHHHh--cCCccccccccCCcchhhcccc
Confidence            357788889999999988875 5666776 89999999999999999999999999  8999999999999999999999


Q ss_pred             cHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhcccccc---CCCChhhHHHHHHHcCChHHHHHHHhc
Q 041247          119 MVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTKNSL---TDDDCIELLVQLIETGFYVVALQLLRD  195 (507)
Q Consensus       119 ~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~  195 (507)
                      +.+++++|+++|+++ ...|.+|..|+..|...-..++...-.....+.+   +....++-|+        ++-. .+. 
T Consensus       118 ~~~i~~~li~~gA~~-~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~--------D~~q-~l~-  186 (527)
T KOG0505|consen  118 YLNIVEYLIQHGANL-LAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLD--------DARQ-WLN-  186 (527)
T ss_pred             cHHHHHHHHHhhhhh-hhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHH--------HHHH-HHh-
Confidence            999999999999997 6788888888887765544444333222211110   0111111111        2222 223 


Q ss_pred             CchhhhhcccCCchHHHHHHhcCCccccccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCC
Q 041247          196 RPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARP  275 (507)
Q Consensus       196 ~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g  275 (507)
                      .+.....++..|.|.||+|+.+|.                            .++.+.|++.+. +++.    .|.+|  
T Consensus       187 ~G~~~d~~~~rG~T~lHvAaa~Gy----------------------------~e~~~lLl~ag~-~~~~----~D~dg--  231 (527)
T KOG0505|consen  187 AGAELDARHARGATALHVAAANGY----------------------------TEVAALLLQAGY-SVNI----KDYDG--  231 (527)
T ss_pred             ccccccccccccchHHHHHHhhhH----------------------------HHHHHHHHHhcc-Cccc----ccccC--
Confidence            255556677779999999999998                            999999999987 6665    45555  


Q ss_pred             ChHHHHHHHcCcHHHHHHHHHHCcccccccccCCCchHHHHHH
Q 041247          276 TRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIFHVAVL  318 (507)
Q Consensus       276 ~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~  318 (507)
                      +||||.|+..|..++.++|+++|+++ +.....|.||+++|..
T Consensus       232 WtPlHAAA~Wg~~~~~elL~~~ga~~-d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  232 WTPLHAAAHWGQEDACELLVEHGADM-DAKTKMGETPLDVADE  273 (527)
T ss_pred             CCcccHHHHhhhHhHHHHHHHhhccc-chhhhcCCCCccchhh
Confidence            99999999999999999999999998 8999999999999865

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.86  E-value=9.6e-22  Score=178.63  Aligned_cols=169  Identities=22%  Similarity=0.214  Sum_probs=146.1

Q ss_pred             CCHHHHHHHHhhch--------hccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHc--
Q 041247           48 GDWAVAKDIYDKYK--------VEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAAS--  117 (507)
Q Consensus        48 g~~~~v~~ll~~~~--------~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~--  117 (507)
                      -+.+.|+..|....        --+|.. |.+|+|+||||+..+++++|+.||+.+ -++++.+|+-|.||+.+++..  
T Consensus       237 a~pe~V~~~l~~f~als~~lL~yvVNla-DsNGNTALHYsVSHaNF~VV~~LLDSg-vC~VD~qNrAGYtpiMLaALA~l  314 (452)
T KOG0514|consen  237 SDPEQVEDYLAYFEALSPPLLEYVVNLA-DSNGNTALHYAVSHANFDVVSILLDSG-VCDVDQQNRAGYTPVMLAALAKL  314 (452)
T ss_pred             CCHHHHHHHHHHHHhcChHHHHHHhhhh-cCCCCeeeeeeecccchHHHHHHhccC-cccccccccccccHHHHHHHHhh
Confidence            35666665554322        124555 899999999999999999999999987 789999999999999998843  


Q ss_pred             ---CcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHHH
Q 041247          118 ---GMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLL  193 (507)
Q Consensus       118 ---g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  193 (507)
                         .+.++|..|...|- ++-.....|+|+|++|+.+|+.++|+.|+..++ .+.+|.+|.|+|..|+++||.|+++.||
T Consensus       315 k~~~d~~vV~~LF~mgn-VNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLL  393 (452)
T KOG0514|consen  315 KQPADRTVVERLFKMGD-VNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLL  393 (452)
T ss_pred             cchhhHHHHHHHHhccC-cchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHh
Confidence               46789999988764 334456789999999999999999999999999 9999999999999999999999999999


Q ss_pred             hcCchhhhhcccCCchHHHHHHhcCC
Q 041247          194 RDRPRLATKRAENEETALHVLARKDL  219 (507)
Q Consensus       194 ~~~~~~~~~~d~~g~t~Lh~A~~~~~  219 (507)
                      .....+....|.+|.|+|.+|-..|+
T Consensus       394 A~p~cd~sLtD~DgSTAl~IAleagh  419 (452)
T KOG0514|consen  394 AVPSCDISLTDVDGSTALSIALEAGH  419 (452)
T ss_pred             ccCcccceeecCCCchhhhhHHhcCc
Confidence            99777888899999999999999999

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.86  E-value=1.6e-21  Score=177.22  Aligned_cols=160  Identities=28%  Similarity=0.321  Sum_probs=146.4

Q ss_pred             CCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHc-----CCHHHHHHHHHcCCchhhccc-c
Q 041247           31 LSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQA-----NCIDFVKELLKMMSTEDLAKK-N  104 (507)
Q Consensus        31 ~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~-----g~~e~v~~Ll~~~~~~~~~~~-d  104 (507)
                      +..|.+|+|+||||+..++.++|+.||+..-.+++.+ |.-|.||+++|+..     .+.++|..|.+.   .++|.+ .
T Consensus       262 NlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~q-NrAGYtpiMLaALA~lk~~~d~~vV~~LF~m---gnVNaKAs  337 (452)
T KOG0514|consen  262 NLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQ-NRAGYTPVMLAALAKLKQPADRTVVERLFKM---GDVNAKAS  337 (452)
T ss_pred             hhhcCCCCeeeeeeecccchHHHHHHhccCccccccc-ccccccHHHHHHHHhhcchhhHHHHHHHHhc---cCcchhhh
Confidence            4569999999999999999999999999999999998 99999999999865     367899999987   356655 4


Q ss_pred             cCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc--cccCCCChhhHHHHHHH
Q 041247          105 KIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK--NSLTDDDCIELLVQLIE  182 (507)
Q Consensus       105 ~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~--~~~~~~~g~t~L~~A~~  182 (507)
                      ..|+|+|.+|+..|+.++|+.|+..|+|+ +.+|.+|.|+|++|+++||.|++++|+....  ....|.+|.|+|..|..
T Consensus       338 Q~gQTALMLAVSHGr~d~vk~LLacgAdV-NiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAle  416 (452)
T KOG0514|consen  338 QHGQTALMLAVSHGRVDMVKALLACGADV-NIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALE  416 (452)
T ss_pred             hhcchhhhhhhhcCcHHHHHHHHHccCCC-ccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHh
Confidence            57999999999999999999999999998 9999999999999999999999999998877  77899999999999999


Q ss_pred             cCChHHHHHHHhc
Q 041247          183 TGFYVVALQLLRD  195 (507)
Q Consensus       183 ~~~~~~v~~Ll~~  195 (507)
                      .||.|+...|-.+
T Consensus       417 agh~eIa~mlYa~  429 (452)
T KOG0514|consen  417 AGHREIAVMLYAH  429 (452)
T ss_pred             cCchHHHHHHHHH
Confidence            9999999888766

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.85  E-value=5.7e-21  Score=166.31  Aligned_cols=144  Identities=13%  Similarity=0.086  Sum_probs=113.7

Q ss_pred             CCCCCCCccccCCHHhHHHHHcCCHHHHHH---HHhhchhccccccCCCCCcHHHHHHHcCCHHH---HHHHHHcCCchh
Q 041247           26 NGGANLSEDSLRRLKLYRAALNGDWAVAKD---IYDKYKVEIGQEITNLGNTALHVAAQANCIDF---VKELLKMMSTED   99 (507)
Q Consensus        26 ~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~---ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~---v~~Ll~~~~~~~   99 (507)
                      +|.+....+..+.+++|.|++.|+.+.++.   ++.+++..++.+ |..|+||||+|+..|+.+.   +++|+++  |++
T Consensus         9 ~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~-d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~--Gad   85 (166)
T PHA02743          9 NNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRY-DHHGRQCTHMVAWYDRANAVMKIELLVNM--GAD   85 (166)
T ss_pred             cchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhcc-CCCCCcHHHHHHHhCccCHHHHHHHHHHc--CCC
Confidence            344444556778888999999999844432   233456777777 8889999999999887654   7889988  788


Q ss_pred             hcccc-cCCCcHHHHHHHcCcHHHHHHHHh-cCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc-cccCCCCh
Q 041247          100 LAKKN-KIGCTAFFYAAASGMVEIVEEMMK-GNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK-NSLTDDDC  173 (507)
Q Consensus       100 ~~~~d-~~g~t~Lh~A~~~g~~~iv~~Ll~-~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g  173 (507)
                      ++.+| ..|+||||+|+..|+.+++++|++ .++++ +.+|..|.||||+|+..++.+++++|+++++ .+.++..|
T Consensus        86 in~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~-~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~  161 (166)
T PHA02743         86 INARELGTGNTLLHIAASTKNYELAEWLCRQLGVNL-GAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIG  161 (166)
T ss_pred             CCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCc-cCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCC
Confidence            99888 589999999999999999999985 78886 7788899999999999999999999999887 55544444

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.85  E-value=9.3e-21  Score=164.95  Aligned_cols=136  Identities=17%  Similarity=0.085  Sum_probs=119.6

Q ss_pred             CcccHHHHHHHcCCC----hhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHH---HHHHHhhchhccccccC-CCCCc
Q 041247            3 NILSGLGWVMTNGIK----EAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAV---AKDIYDKYKVEIGQEIT-NLGNT   74 (507)
Q Consensus         3 ~g~t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~---v~~ll~~~~~~i~~~~~-~~g~t   74 (507)
                      ++.++||.||+.|+.    +++++|++.|...+..|..|+||||+|+..|+.+.   +++|+ +.+++++.+ + ..|+|
T Consensus        19 ~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll-~~Gadin~~-d~~~g~T   96 (166)
T PHA02743         19 DEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLV-NMGADINAR-ELGTGNT   96 (166)
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHH-HcCCCCCCC-CCCCCCc
Confidence            466899999999998    56667888998888889999999999999998765   66665 468999988 7 58999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCC
Q 041247           75 ALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGT  142 (507)
Q Consensus        75 ~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~  142 (507)
                      |||+|+..|+.+++++|++.. +++++.+|..|.||||+|+..++.+++++|+++|+++ +.++..|.
T Consensus        97 pLh~A~~~g~~~iv~~Ll~~~-gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~-~~~~~~~~  162 (166)
T PHA02743         97 LLHIAASTKNYELAEWLCRQL-GVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVC-DDPLSIGL  162 (166)
T ss_pred             HHHHHHHhCCHHHHHHHHhcc-CCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcccCCc
Confidence            999999999999999999633 8999999999999999999999999999999999997 77777664

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.84  E-value=6.7e-21  Score=182.29  Aligned_cols=203  Identities=19%  Similarity=0.169  Sum_probs=176.0

Q ss_pred             HHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHH
Q 041247            8 LGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDF   87 (507)
Q Consensus         8 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~   87 (507)
                      +.-|+..|..+-++.|+..|+.++..+.+|.|+||.++...+.++|+++++. +++++.. |..||||||.|+..||..+
T Consensus        44 ~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~-ga~Vn~~-d~e~wtPlhaaascg~~~i  121 (527)
T KOG0505|consen   44 FLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVEN-GANVNAQ-DNEGWTPLHAAASCGYLNI  121 (527)
T ss_pred             HHhccccccHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHh-cCCcccc-ccccCCcchhhcccccHHH
Confidence            4568999999999999999999999999999999999999999999988864 8999999 9999999999999999999


Q ss_pred             HHHHHHcCCchhhcccccCCCcHHHHHHH-------------cC-cH------------HHHHHHHhcCCCCCccCCCCC
Q 041247           88 VKELLKMMSTEDLAKKNKIGCTAFFYAAA-------------SG-MV------------EIVEEMMKGNKDIAMVPDMDG  141 (507)
Q Consensus        88 v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~-------------~g-~~------------~iv~~Ll~~~~~~~~~~~~~g  141 (507)
                      +++|+++  |+++...|..|..|+..+..             .| .+            +=++..+..|.+. ..++..|
T Consensus       122 ~~~li~~--gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~-d~~~~rG  198 (527)
T KOG0505|consen  122 VEYLIQH--GANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAEL-DARHARG  198 (527)
T ss_pred             HHHHHHh--hhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccc-ccccccc
Confidence            9999999  89988888888888765421             11 01            1123333467665 7777779


Q ss_pred             ChHHHHHHHcCcHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHh
Q 041247          142 TLPIVRAAALEQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLAR  216 (507)
Q Consensus       142 ~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~  216 (507)
                      .|.||.|+.+|+.++.++|++.+. .+.+|.+|++|||.|+.-|+.++++.|+++ +.+.+.....|+||+.++..
T Consensus       199 ~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~-ga~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  199 ATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEH-GADMDAKTKMGETPLDVADE  273 (527)
T ss_pred             chHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHh-hcccchhhhcCCCCccchhh
Confidence            999999999999999999999999 999999999999999999999999977777 67777889999999988755

>PHA02741 hypothetical protein; Provisional

Probab=99.84  E-value=5.9e-20  Score=160.72  Aligned_cols=129  Identities=18%  Similarity=0.230  Sum_probs=115.8

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHcC----CchhhcccccCCCcHHHHHHHcCc----HHHHHHHHhcCCCCCcc
Q 041247           65 GQEITNLGNTALHVAAQANCIDFVKELLKMM----STEDLAKKNKIGCTAFFYAAASGM----VEIVEEMMKGNKDIAMV  136 (507)
Q Consensus        65 ~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~----~~~~~~~~d~~g~t~Lh~A~~~g~----~~iv~~Ll~~~~~~~~~  136 (507)
                      +.+ |..|.||||+|++.|+.++++.|+...    .+++++.+|..|+||||+|+..|+    .+++++|++.|+++ +.
T Consensus        15 ~~~-~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadi-n~   92 (169)
T PHA02741         15 AEK-NSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADI-NA   92 (169)
T ss_pred             hcc-ccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCC-CC
Confidence            344 889999999999999999999986531    157899999999999999999998    58999999999997 77


Q ss_pred             CCC-CCChHHHHHHHcCcHHHHHHHHhc-cc-cccCCCChhhHHHHHHHcCChHHHHHHHhc
Q 041247          137 PDM-DGTLPIVRAAALEQGQMVLLLHKQ-TK-NSLTDDDCIELLVQLIETGFYVVALQLLRD  195 (507)
Q Consensus       137 ~~~-~g~tpL~~A~~~g~~~~v~~Ll~~-~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  195 (507)
                      ++. +|.||||+|+..++.+++++|++. +. .+..|.+|.||||.|+..++.++++.|++.
T Consensus        93 ~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~  154 (169)
T PHA02741         93 QEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREI  154 (169)
T ss_pred             CCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHH
Confidence            774 899999999999999999999974 66 788899999999999999999999999876

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.83  E-value=5.3e-20  Score=172.41  Aligned_cols=147  Identities=14%  Similarity=0.121  Sum_probs=102.2

Q ss_pred             CHHhHHHHHcCCHHHHHHHHhhchhcccccc---CCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhccc-ccCCCcHHHH
Q 041247           38 RLKLYRAALNGDWAVAKDIYDKYKVEIGQEI---TNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKK-NKIGCTAFFY  113 (507)
Q Consensus        38 ~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~---~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~-d~~g~t~Lh~  113 (507)
                      .++||.|+..|+.++++.|++ +|++++.+.   +..|.||||+|+..|+.+++++|+++  |++++.+ +..|.||||+
T Consensus        34 ~~lL~~A~~~~~~eivk~LL~-~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~--GADVN~~~~~~g~TpLh~  110 (300)
T PHA02884         34 ANILYSSIKFHYTDIIDAILK-LGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRY--GADVNRYAEEAKITPLYI  110 (300)
T ss_pred             CHHHHHHHHcCCHHHHHHHHH-CCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCcCcccCCCCCCHHHH
Confidence            345666666677787776664 466776651   34677888888888888888888877  7777775 4567788888


Q ss_pred             HHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccccccCCCChhhHHHHHHHcCChHHHHHHH
Q 041247          114 AAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTKNSLTDDDCIELLVQLIETGFYVVALQLL  193 (507)
Q Consensus       114 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  193 (507)
                      |+..|+.+++++|++.|+++ +.+|..|.||||+|+..++.+++..+...+    .+..+.+|.+.+   ++.++++.|+
T Consensus       111 Aa~~~~~eivklLL~~GAdi-n~kd~~G~TpL~~A~~~~~~~~~~~~~~~~----~~~~~~~~~~~~---~n~ei~~~Li  182 (300)
T PHA02884        111 SVLHGCLKCLEILLSYGADI-NIQTNDMVTPIELALMICNNFLAFMICDNE----ISNFYKHPKKIL---INFDILKILV  182 (300)
T ss_pred             HHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHhCChhHHHHhcCCc----ccccccChhhhh---ccHHHHHHHH
Confidence            88888888888888888776 677777888888887777777765554322    344455666654   3567777777


Q ss_pred             hc
Q 041247          194 RD  195 (507)
Q Consensus       194 ~~  195 (507)
                      ++
T Consensus       183 sh  184 (300)
T PHA02884        183 SH  184 (300)
T ss_pred             HH
Confidence            76

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.82  E-value=3.9e-20  Score=159.60  Aligned_cols=131  Identities=15%  Similarity=0.134  Sum_probs=104.5

Q ss_pred             CCccccCCHHhHHHHHcCCHHHHHHHH----hhchhccccccCCCCCcHHHHHHHcCCH---HHHHHHHHcCCchhhccc
Q 041247           31 LSEDSLRRLKLYRAALNGDWAVAKDIY----DKYKVEIGQEITNLGNTALHVAAQANCI---DFVKELLKMMSTEDLAKK  103 (507)
Q Consensus        31 ~~~~~~g~t~Lh~Aa~~g~~~~v~~ll----~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~---e~v~~Ll~~~~~~~~~~~  103 (507)
                      ...|..|.||||+|+..|+...+....    +..+..+..+ |..|+||||+|+..|+.   +++++|++.  +++++.+
T Consensus        11 ~~~d~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~-d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~--gadin~~   87 (154)
T PHA02736         11 SEPDIEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEY-NRHGKQCVHIVSNPDKADPQEKLKLLMEW--GADINGK   87 (154)
T ss_pred             HhcCCCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHh-cCCCCEEEEeecccCchhHHHHHHHHHHc--CCCcccc
Confidence            345778999999999999843222111    1112234444 88899999999999986   468889998  7899998


Q ss_pred             c-cCCCcHHHHHHHcCcHHHHHHHHhc-CCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc
Q 041247          104 N-KIGCTAFFYAAASGMVEIVEEMMKG-NKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK  165 (507)
Q Consensus       104 d-~~g~t~Lh~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~  165 (507)
                      | ..|+||||+|+..|+.+++++|+++ ++++ +.+|..|+||||+|+..|+.+++++|++.++
T Consensus        88 ~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~-n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga  150 (154)
T PHA02736         88 ERVFGNTPLHIAVYTQNYELATWLCNQPGVNM-EILNYAFKTPYYVACERHDAKMMNILRAKGA  150 (154)
T ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC-ccccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            8 4899999999999999999999974 7886 8889999999999999999999999998876

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.81  E-value=4.6e-19  Score=166.13  Aligned_cols=155  Identities=10%  Similarity=0.116  Sum_probs=131.5

Q ss_pred             cccccCCCCCc-HHHHHHHcCCHHHHHHHHHcCCchhhccc----ccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccC-
Q 041247           64 IGQEITNLGNT-ALHVAAQANCIDFVKELLKMMSTEDLAKK----NKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVP-  137 (507)
Q Consensus        64 i~~~~~~~g~t-~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~----d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~-  137 (507)
                      +..+ |..|.| +||.|+..|+.+++++|+++  |++++.+    +..|.||||+|+..|+.+++++|+++|+++ +.+ 
T Consensus        25 ~~~~-d~~~~~~lL~~A~~~~~~eivk~LL~~--GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADV-N~~~  100 (300)
T PHA02884         25 IKKK-NKICIANILYSSIKFHYTDIIDAILKL--GADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADV-NRYA  100 (300)
T ss_pred             hhcc-CcCCCCHHHHHHHHcCCHHHHHHHHHC--CCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-Cccc
Confidence            4445 666665 67777888999999999999  8999987    468999999999999999999999999997 664 


Q ss_pred             CCCCChHHHHHHHcCcHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHh
Q 041247          138 DMDGTLPIVRAAALEQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLAR  216 (507)
Q Consensus       138 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~  216 (507)
                      +..|.||||.|+..|+.+++++|++.|+ .+.+|.+|.||||.|++.++.+++..+...      ..+..+.+|++++  
T Consensus       101 ~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~~------~~~~~~~~~~~~~--  172 (300)
T PHA02884        101 EEAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMICDN------EISNFYKHPKKIL--  172 (300)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcCC------cccccccChhhhh--
Confidence            5689999999999999999999999999 888999999999999999988877555422      3567788888865  


Q ss_pred             cCCccccccccccccccccchhhhhhhhHHHHHHHHHHHHHHh
Q 041247          217 KDLTSTNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTEVV  259 (507)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~  259 (507)
                       ++                            .++++.|++++.
T Consensus       173 -~n----------------------------~ei~~~Lish~v  186 (300)
T PHA02884        173 -IN----------------------------FDILKILVSHFI  186 (300)
T ss_pred             -cc----------------------------HHHHHHHHHHHH
Confidence             34                            788888888775

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.81  E-value=3.1e-19  Score=145.74  Aligned_cols=146  Identities=18%  Similarity=0.126  Sum_probs=129.4

Q ss_pred             HhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCc
Q 041247           40 KLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGM  119 (507)
Q Consensus        40 ~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~  119 (507)
                      .+.+|+..+.+..|+.||+..+..+|.+ |.+|.||||.|+.+||.+||+.|+..  +++.+.+...|+||||-||.-++
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtr-D~D~YTpLHRAaYn~h~div~~ll~~--gAn~~a~T~~GWTPLhSAckWnN  142 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTR-DEDEYTPLHRAAYNGHLDIVHELLLS--GANKEAKTNEGWTPLHSACKWNN  142 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhcccccccc-ccccccHHHHHHhcCchHHHHHHHHc--cCCcccccccCccchhhhhcccc
Confidence            4789999999999999999988899999 99999999999999999999999998  89999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcH-HHHHHHHhccc--cccCCCChhhHHHHHHHcCChHHH
Q 041247          120 VEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQG-QMVLLLHKQTK--NSLTDDDCIELLVQLIETGFYVVA  189 (507)
Q Consensus       120 ~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~-~~v~~Ll~~~~--~~~~~~~g~t~L~~A~~~~~~~~v  189 (507)
                      .+++..|+++|+++ +.......||||+|+...+. ..+++|+....  +...+..+.||+..|-+.+-..-+
T Consensus       143 ~~va~~LLqhgaDV-nA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~~s~~l  214 (228)
T KOG0512|consen  143 FEVAGRLLQHGADV-NAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTSMSHYL  214 (228)
T ss_pred             hhHHHHHHhccCcc-cccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhhhhHHH
Confidence            99999999999998 77777789999999988665 56677776655  667788899999999887654433

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.81  E-value=7.5e-20  Score=157.85  Aligned_cols=126  Identities=13%  Similarity=0.092  Sum_probs=105.1

Q ss_pred             CcccHHHHHHHcCCChhhHHHHhCCCC-------CCCccccCCHHhHHHHHcCCHH---HHHHHHhhchhccccccC-CC
Q 041247            3 NILSGLGWVMTNGIKEAPRVLLSNGGA-------NLSEDSLRRLKLYRAALNGDWA---VAKDIYDKYKVEIGQEIT-NL   71 (507)
Q Consensus         3 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~-------~~~~~~~g~t~Lh~Aa~~g~~~---~v~~ll~~~~~~i~~~~~-~~   71 (507)
                      +|.||||+|++.|+.  ++.+...+..       ....|..|.||||+|+..|+.+   +++.|++ .+.+++.+ + ..
T Consensus        16 ~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~-~gadin~~-~~~~   91 (154)
T PHA02736         16 EGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLME-WGADINGK-ERVF   91 (154)
T ss_pred             CCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHH-cCCCcccc-CCCC
Confidence            689999999999983  3443333221       1235789999999999999875   5675664 57899988 6 58


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCC
Q 041247           72 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDI  133 (507)
Q Consensus        72 g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~  133 (507)
                      |+||||+|+..|+.+++++|++.. +.+++.+|..|+||||+|+..|+.+++++|++.|++.
T Consensus        92 g~T~Lh~A~~~~~~~i~~~Ll~~~-g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~  152 (154)
T PHA02736         92 GNTPLHIAVYTQNYELATWLCNQP-GVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQC  152 (154)
T ss_pred             CCcHHHHHHHhCCHHHHHHHHhCC-CCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            999999999999999999999854 7899999999999999999999999999999999874

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.79  E-value=6.5e-19  Score=143.88  Aligned_cols=143  Identities=20%  Similarity=0.146  Sum_probs=124.4

Q ss_pred             cHHHHHHHcCCChhhHHHHhCCCC-CCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCC
Q 041247            6 SGLGWVMTNGIKEAPRVLLSNGGA-NLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANC   84 (507)
Q Consensus         6 t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~   84 (507)
                      -.+.+|+..|....|+.||+..++ ++.+|.+|+||||-|+.+|+.++++.|+.. +++.+++ ...||||||-||..++
T Consensus        65 rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~-gAn~~a~-T~~GWTPLhSAckWnN  142 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLS-GANKEAK-TNEGWTPLHSACKWNN  142 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHc-cCCcccc-cccCccchhhhhcccc
Confidence            456789999999999999987665 567899999999999999999999988865 8899998 8899999999999999


Q ss_pred             HHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcH-HHHHHHHhcCCCCCccCCCCCChHHHHHHHcC
Q 041247           85 IDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMV-EIVEEMMKGNKDIAMVPDMDGTLPIVRAAALE  152 (507)
Q Consensus        85 ~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~-~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g  152 (507)
                      .+++-.||++  |+|+|...+...||||.||...+. ..+.+|+....--+..++..+.||+.+|-+.+
T Consensus       143 ~~va~~LLqh--gaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  143 FEVAGRLLQH--GADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTS  209 (228)
T ss_pred             hhHHHHHHhc--cCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhh
Confidence            9999999999  899999999999999999977654 45666665444446788999999999997764

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.76  E-value=1.1e-18  Score=153.96  Aligned_cols=134  Identities=22%  Similarity=0.266  Sum_probs=118.1

Q ss_pred             HHcCCChhhHHHHhCCC-CCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHH
Q 041247           12 MTNGIKEAPRVLLSNGG-ANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKE   90 (507)
Q Consensus        12 ~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~   90 (507)
                      |+.|+.--|+..++... +.+.-|..|.+|||+|++.|+..+++.|+.. ++.+|.. +...+||||+|+..||.++|+.
T Consensus         8 cregna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~r-garvn~t-nmgddtplhlaaahghrdivqk   85 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSR-GARVNST-NMGDDTPLHLAAAHGHRDIVQK   85 (448)
T ss_pred             hhcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhc-ccccccc-cCCCCcchhhhhhcccHHHHHH
Confidence            57777777776666543 4445588999999999999999999988865 8889887 8888999999999999999999


Q ss_pred             HHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHH
Q 041247           91 LLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAA  150 (507)
Q Consensus        91 Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~  150 (507)
                      |++.  .+|+|..|..|+|||||||.-|...+.+-|+..|+.+ +..|++|.|||..|--
T Consensus        86 ll~~--kadvnavnehgntplhyacfwgydqiaedli~~ga~v-~icnk~g~tpldkakp  142 (448)
T KOG0195|consen   86 LLSR--KADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAV-NICNKKGMTPLDKAKP  142 (448)
T ss_pred             HHHH--hcccchhhccCCCchhhhhhhcHHHHHHHHHhcccee-eecccCCCCchhhhch
Confidence            9999  8999999999999999999999999999999999997 8999999999988743

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.74  E-value=3.6e-16  Score=157.36  Aligned_cols=189  Identities=18%  Similarity=0.172  Sum_probs=153.1

Q ss_pred             HHhHHHHHcCCHHHHHHHHhhc--------hhccccccCCCCCcHHHHHHHc---CCHHHHHHHHHcCCchhhcc----c
Q 041247           39 LKLYRAALNGDWAVAKDIYDKY--------KVEIGQEITNLGNTALHVAAQA---NCIDFVKELLKMMSTEDLAK----K  103 (507)
Q Consensus        39 t~Lh~Aa~~g~~~~v~~ll~~~--------~~~i~~~~~~~g~t~Lh~Aa~~---g~~e~v~~Ll~~~~~~~~~~----~  103 (507)
                      .++..|...+..+....++...        ..+++.+ ...|.|.||.|..+   ++.++++.|++.. +..+|.    .
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~R-Ga~GET~Lh~~lL~~~~~~n~la~~LL~~~-p~lind~~~~e  180 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNER-GATGETLLHKALLNLSDGHNELARVLLEIF-PKLINDIYTSE  180 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccc-cchhhhHHHHHHhcCchhHHHHHHHHHHHh-HHHhhhhhhhH
Confidence            5777888888888777666543        2456666 67899999999874   4568999999876 554443    3


Q ss_pred             ccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCc----------cC------------CCCCChHHHHHHHcCcHHHHHHHH
Q 041247          104 NKIGCTAFFYAAASGMVEIVEEMMKGNKDIAM----------VP------------DMDGTLPIVRAAALEQGQMVLLLH  161 (507)
Q Consensus       104 d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~----------~~------------~~~g~tpL~~A~~~g~~~~v~~Ll  161 (507)
                      ...|+||||.|+.+.+.++|++|++.|+|+..          ..            -..|+.||-+||-.++.|++++|+
T Consensus       181 eY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl  260 (782)
T KOG3676|consen  181 EYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLL  260 (782)
T ss_pred             hhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHH
Confidence            46799999999999999999999999999721          11            124789999999999999999999


Q ss_pred             hccc-cccCCCChhhHHHHHHHcCChHHHHHHHhcCch-hhhhcccCCchHHHHHHhcCCccccccccccccccccchhh
Q 041247          162 KQTK-NSLTDDDCIELLVQLIETGFYVVALQLLRDRPR-LATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGA  239 (507)
Q Consensus       162 ~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~-~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~  239 (507)
                      ++++ ++.+|.+|+|.||.++..-..++-..+++.+.. +...+|.+|-|||.+|++.|+                    
T Consensus       261 ~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk--------------------  320 (782)
T KOG3676|consen  261 AHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGK--------------------  320 (782)
T ss_pred             hcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhh--------------------
Confidence            9999 999999999999999999888899999988443 245689999999999999999                    


Q ss_pred             hhhhhHHHHHHHHHHHHH
Q 041247          240 EKEENKQALELVESLWTE  257 (507)
Q Consensus       240 ~~~~~~~~~~~v~~Ll~~  257 (507)
                              .++.+.+++.
T Consensus       321 --------~emf~~ile~  330 (782)
T KOG3676|consen  321 --------KEMFQHILER  330 (782)
T ss_pred             --------HHHHHHHHHh
Confidence                    8899988887

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.73  E-value=1.5e-18  Score=153.18  Aligned_cols=133  Identities=19%  Similarity=0.191  Sum_probs=120.5

Q ss_pred             HHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHH
Q 041247           45 ALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE  124 (507)
Q Consensus        45 a~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~  124 (507)
                      ++.|+.--|+..|++...++|.. |..|.+|||+||+.||..+|+.|+..  |+.+|..|....||||+|+..||.++|+
T Consensus         8 cregna~qvrlwld~tehdln~g-ddhgfsplhwaakegh~aivemll~r--garvn~tnmgddtplhlaaahghrdivq   84 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDDTEHDLNVG-DDHGFSPLHWAAKEGHVAIVEMLLSR--GARVNSTNMGDDTPLHLAAAHGHRDIVQ   84 (448)
T ss_pred             hhcCCeEEEEEEecCcccccccc-cccCcchhhhhhhcccHHHHHHHHhc--ccccccccCCCCcchhhhhhcccHHHHH
Confidence            44455444555667777788887 88999999999999999999999999  8999999999999999999999999999


Q ss_pred             HHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc-cccCCCChhhHHHHHH
Q 041247          125 EMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK-NSLTDDDCIELLVQLI  181 (507)
Q Consensus       125 ~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~  181 (507)
                      .|++..+++ +..|..|.|||||||..|+..+.+-|+..|+ .+..+++|.|||..|-
T Consensus        85 kll~~kadv-navnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkak  141 (448)
T KOG0195|consen   85 KLLSRKADV-NAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAK  141 (448)
T ss_pred             HHHHHhccc-chhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhc
Confidence            999999998 9999999999999999999999999999999 8999999999998763

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.69  E-value=2.5e-16  Score=158.46  Aligned_cols=187  Identities=18%  Similarity=0.154  Sum_probs=156.6

Q ss_pred             cHHHHHHHcCCChhhHHHHhCCC---------CCCCccccCCHHhHHHHHc---CCHHHHHHHHhhchhcccccc---CC
Q 041247            6 SGLGWVMTNGIKEAPRVLLSNGG---------ANLSEDSLRRLKLYRAALN---GDWAVAKDIYDKYKVEIGQEI---TN   70 (507)
Q Consensus         6 t~L~~A~~~g~~~~v~~Ll~~g~---------~~~~~~~~g~t~Lh~Aa~~---g~~~~v~~ll~~~~~~i~~~~---~~   70 (507)
                      .++..|...|..+..+.++..+.         +.+.+...|.|.||.|..+   ++-++++.|++-.|..++...   ..
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY  182 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEY  182 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhh
Confidence            45556666777777766666552         3344567899999999884   556889999988887666432   35


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCchhhccc---------c--------------cCCCcHHHHHHHcCcHHHHHHHH
Q 041247           71 LGNTALHVAAQANCIDFVKELLKMMSTEDLAKK---------N--------------KIGCTAFFYAAASGMVEIVEEMM  127 (507)
Q Consensus        71 ~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~---------d--------------~~g~t~Lh~A~~~g~~~iv~~Ll  127 (507)
                      .|.||||+|+.+.+.++|++|++.  |+|++++         |              ..|+.||-+||-.++.|++++|+
T Consensus       183 ~GqSaLHiAIv~~~~~~V~lLl~~--gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl  260 (782)
T KOG3676|consen  183 YGQSALHIAIVNRDAELVRLLLAA--GADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLL  260 (782)
T ss_pred             cCcchHHHHHHhccHHHHHHHHHc--CCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHH
Confidence            699999999999999999999999  7887642         1              24789999999999999999999


Q ss_pred             hcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc---cccCCCChhhHHHHHHHcCChHHHHHHHhc
Q 041247          128 KGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK---NSLTDDDCIELLVQLIETGFYVVALQLLRD  195 (507)
Q Consensus       128 ~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  195 (507)
                      ++++|+ +.+|..|.|.||..+..-..+|.+++++.++   ...++.+|.|||.+|++-|+.++.+.+++.
T Consensus       261 ~~gAd~-~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  261 AHGADP-NAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             hcCCCC-CccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            999996 9999999999999999988999999999998   456899999999999999999999999988

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.69  E-value=2.2e-16  Score=122.52  Aligned_cols=85  Identities=39%  Similarity=0.540  Sum_probs=56.7

Q ss_pred             hHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcH
Q 041247           41 LYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMV  120 (507)
Q Consensus        41 Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~  120 (507)
                      ||+|++.|+.++++++++. +.+++    . |+||||+|+..|+.+++++|+++  +.+++.+|..|+||||+|+..|+.
T Consensus         1 L~~A~~~~~~~~~~~ll~~-~~~~~----~-~~~~l~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~   72 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEK-GADIN----L-GNTALHYAAENGNLEIVKLLLEN--GADINSQDKNGNTALHYAAENGNL   72 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHT-TSTTT----S-SSBHHHHHHHTTTHHHHHHHHHT--TTCTT-BSTTSSBHHHHHHHTTHH
T ss_pred             CHHHHHcCCHHHHHHHHHC-cCCCC----C-CCCHHHHHHHcCCHHHHHHHHHh--cccccccCCCCCCHHHHHHHcCCH
Confidence            5677777777777766663 33332    2 66777777777777777777776  667777777777777777777777


Q ss_pred             HHHHHHHhcCCCC
Q 041247          121 EIVEEMMKGNKDI  133 (507)
Q Consensus       121 ~iv~~Ll~~~~~~  133 (507)
                      +++++|+++|+++
T Consensus        73 ~~~~~Ll~~g~~~   85 (89)
T PF12796_consen   73 EIVKLLLEHGADV   85 (89)
T ss_dssp             HHHHHHHHTTT-T
T ss_pred             HHHHHHHHcCCCC
Confidence            7777777777665

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.68  E-value=4.4e-16  Score=129.08  Aligned_cols=123  Identities=32%  Similarity=0.413  Sum_probs=83.0

Q ss_pred             cccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHH
Q 041247           34 DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFY  113 (507)
Q Consensus        34 ~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~  113 (507)
                      |..|.||||.|+..|+.++++++++. +.+.+.. +..|.||||.|+..++.+++++|++.  +..++..+..|.||+|+
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~-~~~~~~~-~~~g~~~l~~a~~~~~~~~~~~ll~~--~~~~~~~~~~~~~~l~~   79 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLEN-GADVNAK-DNDGRTPLHLAAKNGHLEIVKLLLEK--GADVNARDKDGNTPLHL   79 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCcc-CCCCCcHHHHHHHcCCHHHHHHHHHc--CCCccccCCCCCCHHHH
Confidence            35566777777777777777766644 3333444 66677777777777777777777776  55666666677777777


Q ss_pred             HHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHH
Q 041247          114 AAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLH  161 (507)
Q Consensus       114 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll  161 (507)
                      |+..++.+++++|++.+.+. +..+..|.||+++|...++.+++++|+
T Consensus        80 a~~~~~~~~~~~L~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          80 AARNGNLDVVKLLLKHGADV-NARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHHcCcHHHHHHHHHcCCCC-cccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            77777777777777766664 556666777777777777777776653

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.68  E-value=7.7e-16  Score=127.64  Aligned_cols=122  Identities=31%  Similarity=0.355  Sum_probs=112.8

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHH
Q 041247           69 TNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRA  148 (507)
Q Consensus        69 ~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  148 (507)
                      |.+|.||||+|+..|+.+++++|++.  +.+.+..+..|.||+|.|+..++.+++++|++.++.+ +..+..|.||+|.|
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~--~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~-~~~~~~~~~~l~~a   80 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLEN--GADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADV-NARDKDGNTPLHLA   80 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHc--CCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHH
Confidence            67899999999999999999999999  6777889999999999999999999999999999876 77889999999999


Q ss_pred             HHcCcHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHHH
Q 041247          149 AALEQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLL  193 (507)
Q Consensus       149 ~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  193 (507)
                      +..++.+++++|++.+. .+..+..+.||++.|+..++.+++++|+
T Consensus        81 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          81 ARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            99999999999999987 6778888999999999999999988874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.67  E-value=4.3e-16  Score=120.91  Aligned_cols=87  Identities=32%  Similarity=0.435  Sum_probs=78.4

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHH
Q 041247           76 LHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQ  155 (507)
Q Consensus        76 Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~  155 (507)
                      ||+|++.|+.+++++|++.  +.+++.    |+||||+|+..|+.+++++|++.|+++ +.+|.+|.||||+|+.+|+.+
T Consensus         1 L~~A~~~~~~~~~~~ll~~--~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~   73 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEK--GADINL----GNTALHYAAENGNLEIVKLLLENGADI-NSQDKNGNTALHYAAENGNLE   73 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHT--TSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCT-T-BSTTSSBHHHHHHHTTHHH
T ss_pred             CHHHHHcCCHHHHHHHHHC--cCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccc-cccCCCCCCHHHHHHHcCCHH
Confidence            7999999999999999997  666665    899999999999999999999999997 889999999999999999999


Q ss_pred             HHHHHHhccc-cccC
Q 041247          156 MVLLLHKQTK-NSLT  169 (507)
Q Consensus       156 ~v~~Ll~~~~-~~~~  169 (507)
                      ++++|+++|+ .+.+
T Consensus        74 ~~~~Ll~~g~~~~~~   88 (89)
T PF12796_consen   74 IVKLLLEHGADVNIR   88 (89)
T ss_dssp             HHHHHHHTTT-TTSS
T ss_pred             HHHHHHHcCCCCCCc
Confidence            9999999987 5443

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.57  E-value=1.6e-14  Score=105.46  Aligned_cols=103  Identities=21%  Similarity=0.300  Sum_probs=86.7

Q ss_pred             HHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcC
Q 041247           39 LKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASG  118 (507)
Q Consensus        39 t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g  118 (507)
                      ..+.|++++|.++.|+....+ +.+++..  ..|++|||+|+.+|+.+++++|+..  |++++.+|++|-|||..|+..|
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~-g~nVn~~--~ggR~plhyAAD~GQl~ilefli~i--GA~i~~kDKygITPLLsAvwEG   78 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNE-GLNVNEI--YGGRTPLHYAADYGQLSILEFLISI--GANIQDKDKYGITPLLSAVWEG   78 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHc-cccHHHH--hCCcccchHhhhcchHHHHHHHHHh--ccccCCccccCCcHHHHHHHHh
Confidence            347788999999999877765 4667765  4789999999999999999999998  8999999999999999999999


Q ss_pred             cHHHHHHHHhcCCCCCccCCCCCChHHHH
Q 041247          119 MVEIVEEMMKGNKDIAMVPDMDGTLPIVR  147 (507)
Q Consensus       119 ~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~  147 (507)
                      |.++|++|++.|++- ..+..+|.+.+..
T Consensus        79 H~~cVklLL~~GAdr-t~~~PdG~~~~ea  106 (117)
T KOG4214|consen   79 HRDCVKLLLQNGADR-TIHAPDGTALIEA  106 (117)
T ss_pred             hHHHHHHHHHcCccc-ceeCCCchhHHhh
Confidence            999999999999986 5667777665543

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.50  E-value=7e-13  Score=122.27  Aligned_cols=125  Identities=25%  Similarity=0.263  Sum_probs=116.9

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCc-----HHHHHHHHhcCC--CCCccCCCCC
Q 041247           69 TNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGM-----VEIVEEMMKGNK--DIAMVPDMDG  141 (507)
Q Consensus        69 ~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~-----~~iv~~Ll~~~~--~~~~~~~~~g  141 (507)
                      +..+.+++|.++..+..++++++++.  +.+++.+|..|.||||+|+..|+     .++++.|++.|+  +....+|..|
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g  147 (235)
T COG0666          70 DLDGRLPLHSAASKGDDKIVKLLLAS--GADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDG  147 (235)
T ss_pred             CccccCHHHHHHHcCcHHHHHHHHHc--CCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCC
Confidence            66789999999999999999999998  78899999999999999999999     999999999999  5668889999


Q ss_pred             ChHHHHHHHcCcHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHHHhc
Q 041247          142 TLPIVRAAALEQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLLRD  195 (507)
Q Consensus       142 ~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  195 (507)
                      .||||+|+..|+.++++.|++.++ .+..+..|.|+++.|+..++.++++.+++.
T Consensus       148 ~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~  202 (235)
T COG0666         148 NTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDK  202 (235)
T ss_pred             CchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhc
Confidence            999999999999999999999999 788899999999999999999999999886

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.49  E-value=1.5e-13  Score=100.38  Aligned_cols=103  Identities=21%  Similarity=0.229  Sum_probs=91.4

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcC
Q 041247           73 NTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALE  152 (507)
Q Consensus        73 ~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g  152 (507)
                      +--..+++++|..+-|+..+..  +.++|..- .|++|||+|+..|+.+++++|+..|+++ +.+|+.|-|||.-|+..|
T Consensus         3 d~~~~W~vkNG~~DeVk~~v~~--g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i-~~kDKygITPLLsAvwEG   78 (117)
T KOG4214|consen    3 DMSVAWNVKNGEIDEVKQSVNE--GLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANI-QDKDKYGITPLLSAVWEG   78 (117)
T ss_pred             chhHhhhhccCcHHHHHHHHHc--cccHHHHh-CCcccchHhhhcchHHHHHHHHHhcccc-CCccccCCcHHHHHHHHh
Confidence            3456788999999999999988  77777654 8999999999999999999999999998 899999999999999999


Q ss_pred             cHHHHHHHHhccc-cccCCCChhhHHHH
Q 041247          153 QGQMVLLLHKQTK-NSLTDDDCIELLVQ  179 (507)
Q Consensus       153 ~~~~v~~Ll~~~~-~~~~~~~g~t~L~~  179 (507)
                      |.++|++|+++|+ ......+|.+.+..
T Consensus        79 H~~cVklLL~~GAdrt~~~PdG~~~~ea  106 (117)
T KOG4214|consen   79 HRDCVKLLLQNGADRTIHAPDGTALIEA  106 (117)
T ss_pred             hHHHHHHHHHcCcccceeCCCchhHHhh
Confidence            9999999999999 66677788776654

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.47  E-value=2.7e-13  Score=125.06  Aligned_cols=129  Identities=26%  Similarity=0.282  Sum_probs=116.3

Q ss_pred             CCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCC-----HHHHHHHHHcCCch---hhcc
Q 041247           31 LSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANC-----IDFVKELLKMMSTE---DLAK  102 (507)
Q Consensus        31 ~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~-----~e~v~~Ll~~~~~~---~~~~  102 (507)
                      ...+..+.+++|.++..++.+.+++++.. +.+++.+ |..|.||||+|+..|+     .++++.|++.  ++   ..+.
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~-~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~--g~~~~~~~~  142 (235)
T COG0666          67 AARDLDGRLPLHSAASKGDDKIVKLLLAS-GADVNAK-DADGDTPLHLAALNGNPPEGNIEVAKLLLEA--GADLDVNNL  142 (235)
T ss_pred             ccCCccccCHHHHHHHcCcHHHHHHHHHc-CCCcccc-cCCCCcHHHHHHhcCCcccchHHHHHHHHHc--CCCCCCccc
Confidence            34566789999999999999999867765 7777777 9999999999999999     9999999999  66   6777


Q ss_pred             cccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhcc
Q 041247          103 KNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQT  164 (507)
Q Consensus       103 ~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~  164 (507)
                      +|..|+||||+|+..|+.++++.|++.+++. +.++..|.|+++.|+..++.++++.+.+.+
T Consensus       143 ~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         143 RDEDGNTPLHWAALNGDADIVELLLEAGADP-NSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             cCCCCCchhHHHHHcCchHHHHHHHhcCCCC-cccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            7999999999999999999999999999997 788999999999999999999999999975

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.42  E-value=4.4e-13  Score=92.70  Aligned_cols=54  Identities=35%  Similarity=0.561  Sum_probs=31.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHH
Q 041247           72 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMM  127 (507)
Q Consensus        72 g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll  127 (507)
                      |+||||+|++.|+.+++++|+++  +.+++.+|.+|+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~--~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEH--GADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHT--TSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            45666666666666666666666  5666666666666666666666666666664

...

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.40  E-value=6.8e-13  Score=91.77  Aligned_cols=54  Identities=30%  Similarity=0.388  Sum_probs=46.1

Q ss_pred             CChHHHHHHHcCcHHHHHHHHHHCcccccccccCCCchHHHHHHhCchHHHHHHH
Q 041247          275 PTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIFHVAVLNRLEELFKFIY  329 (507)
Q Consensus       275 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll  329 (507)
                      |+||||.|++.|+.+++++|++++.++ +.+|.+|+||||+|+.+|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~di-n~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADI-NAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGT-T-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            589999999999999999999999998 888999999999999999999999986

...

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.40  E-value=8.9e-13  Score=125.89  Aligned_cols=117  Identities=21%  Similarity=0.211  Sum_probs=60.6

Q ss_pred             HHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHH
Q 041247           42 YRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVE  121 (507)
Q Consensus        42 h~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~  121 (507)
                      .-|+..|.+|+|+.++.+ -.|.... |..|-|+||-|+..||.+||++|++.  |+++|..|.+|+||||.|+..+++.
T Consensus       555 LDaaLeGEldlVq~~i~e-v~DpSqp-NdEGITaLHNAiCaghyeIVkFLi~~--ganVNa~DSdGWTPLHCAASCNnv~  630 (752)
T KOG0515|consen  555 LDAALEGELDLVQRIIYE-VTDPSQP-NDEGITALHNAICAGHYEIVKFLIEF--GANVNAADSDGWTPLHCAASCNNVP  630 (752)
T ss_pred             HhhhhcchHHHHHHHHHh-hcCCCCC-CccchhHHhhhhhcchhHHHHHHHhc--CCcccCccCCCCchhhhhhhcCchH
Confidence            445555555555544433 2233333 45555555555555555555555555  5555555555555555555555555


Q ss_pred             HHHHHHhcCCCCCccCCCCCChHHHHHHH--cCcHHHHHHHHh
Q 041247          122 IVEEMMKGNKDIAMVPDMDGTLPIVRAAA--LEQGQMVLLLHK  162 (507)
Q Consensus       122 iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~--~g~~~~v~~Ll~  162 (507)
                      +++.|++.|+-+--..-.++.|+...+-.  .|+.++.++|..
T Consensus       631 ~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  631 MCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             HHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            55555555555433333444455444322  244455555543

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.36  E-value=6.7e-13  Score=92.23  Aligned_cols=50  Identities=34%  Similarity=0.458  Sum_probs=19.3

Q ss_pred             hccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHH
Q 041247           62 VEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYA  114 (507)
Q Consensus        62 ~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A  114 (507)
                      .+++.+ |..|.||||+|+..|+.+++++|++.  +++++.+|..|+||||+|
T Consensus         7 ~~~n~~-d~~G~T~LH~A~~~g~~~~v~~Ll~~--g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    7 ADVNAQ-DKYGNTPLHWAARYGHSEVVRLLLQN--GADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             --TT----TTS--HHHHHHHHT-HHHHHHHHHC--T--TT---TTS--HHHH-
T ss_pred             CCCcCc-CCCCCcHHHHHHHcCcHHHHHHHHHC--cCCCCCCcCCCCCHHHhC
Confidence            445554 55555555555555555555555544  555555555555555554

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.32  E-value=5.7e-12  Score=133.24  Aligned_cols=106  Identities=22%  Similarity=0.275  Sum_probs=91.5

Q ss_pred             HHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcC
Q 041247           39 LKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASG  118 (507)
Q Consensus        39 t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g  118 (507)
                      ..|+.|+..|+.+.++.|++ .+.+++.+ |..|+||||+|+..|+.+++++|+++  |++++.+|..|.||||+|+..|
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~-~Gadin~~-d~~G~TpLh~Aa~~g~~eiv~~LL~~--Gadvn~~d~~G~TpLh~A~~~g  159 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLT-GGADPNCR-DYDGRTPLHIACANGHVQVVRVLLEF--GADPTLLDKDGKTPLELAEENG  159 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHH-CCCCCCCc-CCCCCcHHHHHHHCCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHCC
Confidence            35889999999999997776 47888888 99999999999999999999999999  8999999999999999999999


Q ss_pred             cHHHHHHHHhc-------CCCCCccCCCCCChHHHHHH
Q 041247          119 MVEIVEEMMKG-------NKDIAMVPDMDGTLPIVRAA  149 (507)
Q Consensus       119 ~~~iv~~Ll~~-------~~~~~~~~~~~g~tpL~~A~  149 (507)
                      +.+++++|+++       +++. +..+..|.+|+..+.
T Consensus       160 ~~~iv~~Ll~~~~~~~~~ga~~-~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        160 FREVVQLLSRHSQCHFELGANA-KPDSFTGKPPSLEDS  196 (664)
T ss_pred             cHHHHHHHHhCCCcccccCCCC-CccccCCCCccchhh
Confidence            99999999988       6665 566666776665443

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.32  E-value=1.5e-12  Score=90.39  Aligned_cols=56  Identities=30%  Similarity=0.439  Sum_probs=32.8

Q ss_pred             HHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHH
Q 041247           91 LLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRA  148 (507)
Q Consensus        91 Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  148 (507)
                      |++++ +.+++.+|..|+||||+|+..|+.+++++|++.++++ +.+|.+|+||||+|
T Consensus         1 LL~~~-~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~-~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHG-PADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADP-NAKDKDGQTPLHYA   56 (56)
T ss_dssp             ------T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--T-T---TTS--HHHH-
T ss_pred             CCccC-cCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCC-CCCcCCCCCHHHhC
Confidence            56663 4889999999999999999999999999999999997 99999999999987

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.31  E-value=6.6e-12  Score=132.76  Aligned_cols=101  Identities=21%  Similarity=0.142  Sum_probs=91.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcH
Q 041247           75 ALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQG  154 (507)
Q Consensus        75 ~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~  154 (507)
                      .|+.|+..|+.+.++.|++.  +++++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+..|+.
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~--Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadv-n~~d~~G~TpLh~A~~~g~~  161 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTG--GADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADP-TLLDKDGKTPLELAEENGFR  161 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHC--CCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCcH
Confidence            58899999999999999998  8999999999999999999999999999999999997 89999999999999999999


Q ss_pred             HHHHHHHhc-------cc-cccCCCChhhHHH
Q 041247          155 QMVLLLHKQ-------TK-NSLTDDDCIELLV  178 (507)
Q Consensus       155 ~~v~~Ll~~-------~~-~~~~~~~g~t~L~  178 (507)
                      +++++|+++       ++ ....+.+|.+|+.
T Consensus       162 ~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~  193 (664)
T PTZ00322        162 EVVQLLSRHSQCHFELGANAKPDSFTGKPPSL  193 (664)
T ss_pred             HHHHHHHhCCCcccccCCCCCccccCCCCccc
Confidence            999999998       54 4455565665544

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.31  E-value=6.1e-12  Score=120.29  Aligned_cols=117  Identities=24%  Similarity=0.207  Sum_probs=101.9

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHH
Q 041247           76 LHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQ  155 (507)
Q Consensus        76 Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~  155 (507)
                      |.-|+..|.+|+|+..+..  -.|+...|..|-|+||-|+-.||.+||++|++.|+++ +..|.+|+||||+|+..++..
T Consensus       554 LLDaaLeGEldlVq~~i~e--v~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganV-Na~DSdGWTPLHCAASCNnv~  630 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYE--VTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANV-NAADSDGWTPLHCAASCNNVP  630 (752)
T ss_pred             HHhhhhcchHHHHHHHHHh--hcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcc-cCccCCCCchhhhhhhcCchH
Confidence            3448889999999999988  5789999999999999999999999999999999998 999999999999999999999


Q ss_pred             HHHHHHhccc--cccCCCChhhHHHHHH--HcCChHHHHHHHhc
Q 041247          156 MVLLLHKQTK--NSLTDDDCIELLVQLI--ETGFYVVALQLLRD  195 (507)
Q Consensus       156 ~v~~Ll~~~~--~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~  195 (507)
                      +++.|++.|+  .-.+-.++.|+...|-  +.|+.++.++|-..
T Consensus       631 ~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~v  674 (752)
T KOG0515|consen  631 MCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYGV  674 (752)
T ss_pred             HHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHHH
Confidence            9999999998  3335577888887764  35677777777543

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.30  E-value=2.3e-11  Score=108.00  Aligned_cols=121  Identities=18%  Similarity=0.236  Sum_probs=93.6

Q ss_pred             CHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcc-cccCCCcHHHHHHH
Q 041247           38 RLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAK-KNKIGCTAFFYAAA  116 (507)
Q Consensus        38 ~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~-~d~~g~t~Lh~A~~  116 (507)
                      ..||..++..|+.+....||.. ...++.. |+.|.+||..|+..|+.++|+.|++.  |+|+|. ++..+.||||.|+.
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~-vr~vn~~-D~sGMs~LahAaykGnl~~v~lll~~--gaDvN~~qhg~~YTpLmFAAL   88 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLST-VRQVNQR-DPSGMSVLAHAAYKGNLTLVELLLEL--GADVNDKQHGTLYTPLMFAAL   88 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHH-hhhhhcc-CCCcccHHHHHHhcCcHHHHHHHHHh--CCCcCcccccccccHHHHHHH
Confidence            4578888888888888877765 4557776 88888888888888888888888888  777764 35567788888888


Q ss_pred             cCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhc
Q 041247          117 SGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQ  163 (507)
Q Consensus       117 ~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~  163 (507)
                      +|+.++.++|++.|+.. ...|.-|+|+-.+|+.-|+-++|..+-++
T Consensus        89 SGn~dvcrllldaGa~~-~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   89 SGNQDVCRLLLDAGARM-YLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             cCCchHHHHHHhccCcc-ccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            88888888888888874 77777888888888888888877665544

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.29  E-value=1.3e-11  Score=109.52  Aligned_cols=125  Identities=23%  Similarity=0.138  Sum_probs=113.9

Q ss_pred             CCcccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHH
Q 041247            2 DNILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQ   81 (507)
Q Consensus         2 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~   81 (507)
                      |.-.+||..++..|+.+-...||+--...+..|..|.++|..|+..|+.++++.+|+ .++|+|...+..+.||||.|+.
T Consensus        10 d~~~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~-~gaDvN~~qhg~~YTpLmFAAL   88 (396)
T KOG1710|consen   10 DAPKSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLE-LGADVNDKQHGTLYTPLMFAAL   88 (396)
T ss_pred             cchhhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHH-hCCCcCcccccccccHHHHHHH
Confidence            445689999999999999999998876788899999999999999999999997775 5899998878889999999999


Q ss_pred             cCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhc
Q 041247           82 ANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKG  129 (507)
Q Consensus        82 ~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~  129 (507)
                      +|+.++.+.|++.  |+.....|.-|+|+-.+|+.-|+.++|..+-.+
T Consensus        89 SGn~dvcrlllda--Ga~~~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   89 SGNQDVCRLLLDA--GARMYLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             cCCchHHHHHHhc--cCccccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            9999999999999  899999999999999999999999998876543

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.98  E-value=2.4e-09  Score=103.47  Aligned_cols=121  Identities=20%  Similarity=0.186  Sum_probs=104.3

Q ss_pred             hHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcH
Q 041247           41 LYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMV  120 (507)
Q Consensus        41 Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~  120 (507)
                      +..|+..++.--++..... +.++..+ +.+..+.||+|+..|+-|+|+++++++.++.++..|..|+|+||-|+-.++.
T Consensus       870 il~av~~~D~~klqE~h~~-gg~ll~~-~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r  947 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLN-GGSLLIQ-GPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNR  947 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhc-CCceEee-CcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcch
Confidence            5677777776555545444 4556666 8889999999999999999999999985566899999999999999999999


Q ss_pred             HHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhcc
Q 041247          121 EIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQT  164 (507)
Q Consensus       121 ~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~  164 (507)
                      .+.++|++.|+.+ ...|..|.||-..|-+.|..+...+|-.+.
T Consensus       948 ~vc~~lvdagasl-~ktd~kg~tp~eraqqa~d~dlaayle~rq  990 (1004)
T KOG0782|consen  948 AVCQLLVDAGASL-RKTDSKGKTPQERAQQAGDPDLAAYLESRQ  990 (1004)
T ss_pred             HHHHHHHhcchhh-eecccCCCChHHHHHhcCCchHHHHHhhhh
Confidence            9999999999998 889999999999999999999998887654

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.84  E-value=2.8e-09  Score=101.12  Aligned_cols=93  Identities=25%  Similarity=0.249  Sum_probs=80.0

Q ss_pred             cccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHH
Q 041247           34 DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFY  113 (507)
Q Consensus        34 ~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~  113 (507)
                      +.++...+.+|++.|+...++.+.-+ +.+++.+ |.+.+|+||+||..|+.+++++|++.. +.+++.+|.+|+|||..
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~-g~D~~~~-DyD~RTaLHvAAaEG~v~v~kfl~~~~-kv~~~~kDRw~rtPlDd  579 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQ-GMDLETK-DYDDRTALHVAAAEGHVEVVKFLLNAC-KVDPDPKDRWGRTPLDD  579 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHh-ccccccc-ccccchhheeecccCceeHHHHHHHHH-cCCCChhhccCCCcchH
Confidence            34566778899999999988877765 7788888 889999999999999999999999887 88889999999999999


Q ss_pred             HHHcCcHHHHHHHHhc
Q 041247          114 AAASGMVEIVEEMMKG  129 (507)
Q Consensus       114 A~~~g~~~iv~~Ll~~  129 (507)
                      |...+|.+++++|-+.
T Consensus       580 A~~F~h~~v~k~L~~~  595 (622)
T KOG0506|consen  580 AKHFKHKEVVKLLEEA  595 (622)
T ss_pred             hHhcCcHHHHHHHHHH
Confidence            9999999999988764

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.83  E-value=1e-08  Score=99.23  Aligned_cols=120  Identities=22%  Similarity=0.120  Sum_probs=105.8

Q ss_pred             HHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHH
Q 041247            8 LGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDF   87 (507)
Q Consensus         8 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~   87 (507)
                      +..|+..++.--++..-.+|++...++.+..+.||+|+..|+-|+|+|+|+..|..+....|..|.|+||.|+..++..+
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~v  949 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAV  949 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHH
Confidence            45667777766666667788888889999999999999999999999999988776654458999999999999999999


Q ss_pred             HHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhc
Q 041247           88 VKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKG  129 (507)
Q Consensus        88 v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~  129 (507)
                      .++|++.  |+.+...|..|.||-.-|-+.|..|...+|-..
T Consensus       950 c~~lvda--gasl~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  950 CQLLVDA--GASLRKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HHHHHhc--chhheecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            9999999  899999999999999999999999999998653

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.77  E-value=6.5e-09  Score=105.01  Aligned_cols=94  Identities=22%  Similarity=0.292  Sum_probs=66.2

Q ss_pred             HHHHHhhchh-ccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhccccc-CCCcHHHHHHHcCcHHHHHHHHhcC
Q 041247           53 AKDIYDKYKV-EIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNK-IGCTAFFYAAASGMVEIVEEMMKGN  130 (507)
Q Consensus        53 v~~ll~~~~~-~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~-~g~t~Lh~A~~~g~~~iv~~Ll~~~  130 (507)
                      ++-+++++.. ..+.+ |..|+|+||+|+..|..++++||+++  |.+++.+|+ .|.||||-|...|++|++-.|+.+|
T Consensus        33 lk~F~~k~c~n~anik-D~~GR~alH~~~S~~k~~~l~wLlqh--Gidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g  109 (1267)
T KOG0783|consen   33 LKGFSEKSCQNLANIK-DRYGRTALHIAVSENKNSFLRWLLQH--GIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKG  109 (1267)
T ss_pred             HHHHHHHhhhhhhhHH-HhhccceeeeeeccchhHHHHHHHhc--CceeeeccccccchHhhHhhhhchHHHHHHHHhcC
Confidence            4445544332 23444 77777777777777777777777777  677777764 5777777777777777777777777


Q ss_pred             CCCCccCCCCCChHHHHHHH
Q 041247          131 KDIAMVPDMDGTLPIVRAAA  150 (507)
Q Consensus       131 ~~~~~~~~~~g~tpL~~A~~  150 (507)
                      ..+ ..+|++|.+||..-++
T Consensus       110 ~SL-~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  110 RSL-RIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             Cce-EEecccCCCHHHHHhh
Confidence            776 7777777777776665

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.66  E-value=6.9e-06  Score=84.66  Aligned_cols=119  Identities=23%  Similarity=0.240  Sum_probs=93.9

Q ss_pred             CCHHhHHHHHcCCHHHHHHHHhhchh---ccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHH
Q 041247           37 RRLKLYRAALNGDWAVAKDIYDKYKV---EIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFY  113 (507)
Q Consensus        37 g~t~Lh~Aa~~g~~~~v~~ll~~~~~---~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~  113 (507)
                      +.--...|+++|+.-.|+..++....   ++|.. |.-|+++||+|..+.+.|++++|+++  +...       ..+|.+
T Consensus        25 ~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~-d~lGr~al~iai~nenle~~eLLl~~--~~~~-------gdALL~   94 (822)
T KOG3609|consen   25 GEKGFLLAHENGDVPLVAKALEYKAVSKLNINCR-DPLGRLALHIAIDNENLELQELLLDT--SSEE-------GDALLL   94 (822)
T ss_pred             hhHHHHHHHHcCChHHHHHHHHhccccccchhcc-ChHhhhceecccccccHHHHHHHhcC--cccc-------chHHHH
Confidence            33457789999999999999887543   56666 88999999999999999999999988  3333       457888


Q ss_pred             HHHcCcHHHHHHHHhcCCCC---------CccCCCCCChHHHHHHHcCcHHHHHHHHhccc
Q 041247          114 AAASGMVEIVEEMMKGNKDI---------AMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK  165 (507)
Q Consensus       114 A~~~g~~~iv~~Ll~~~~~~---------~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~  165 (507)
                      |+..|.+++|+.++.+-...         +...-..+.||+.+||..++.|+++.|+++|.
T Consensus        95 aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~  155 (822)
T KOG3609|consen   95 AIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGH  155 (822)
T ss_pred             HHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCC
Confidence            99999999999998864332         11223456799999999999999999999887

>PF13606 Ank_3: Ankyrin repeat

Probab=98.65  E-value=2e-08  Score=59.30  Aligned_cols=29  Identities=28%  Similarity=0.210  Sum_probs=24.9

Q ss_pred             CcccHHHHHHHcCCChhhHHHHhCCCCCC
Q 041247            3 NILSGLGWVMTNGIKEAPRVLLSNGGANL   31 (507)
Q Consensus         3 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~   31 (507)
                      ||+||||+||+.|+.|++++|+++|++++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            68899999999999999999999887664

>PF13606 Ank_3: Ankyrin repeat

Probab=98.58  E-value=5.7e-08  Score=57.31  Aligned_cols=23  Identities=52%  Similarity=0.693  Sum_probs=11.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHc
Q 041247           72 GNTALHVAAQANCIDFVKELLKM   94 (507)
Q Consensus        72 g~t~Lh~Aa~~g~~e~v~~Ll~~   94 (507)
                      |+||||+|++.|+.|+|++|+++
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~   24 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEH   24 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHc
Confidence            44555555555555555555544

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.56  E-value=6.3e-08  Score=98.09  Aligned_cols=85  Identities=19%  Similarity=0.201  Sum_probs=78.3

Q ss_pred             chhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCC-CCCChHHHHHHHcCcHHHHHHHHhccc-cccCCCChh
Q 041247           97 TEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPD-MDGTLPIVRAAALEQGQMVLLLHKQTK-NSLTDDDCI  174 (507)
Q Consensus        97 ~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~-~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~  174 (507)
                      +...|.+|..|+|+||+|+..|..++++||+++|.++ ..+| ..|+||||.|+..|+.|++..|+.+|. ....|++|.
T Consensus        42 ~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv-~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkegl  120 (1267)
T KOG0783|consen   42 QNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDV-FVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGL  120 (1267)
T ss_pred             hhhhhHHHhhccceeeeeeccchhHHHHHHHhcCcee-eeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCC
Confidence            4458999999999999999999999999999999998 6666 569999999999999999999999999 888999999


Q ss_pred             hHHHHHHH
Q 041247          175 ELLVQLIE  182 (507)
Q Consensus       175 t~L~~A~~  182 (507)
                      .||...++
T Consensus       121 splq~~~r  128 (1267)
T KOG0783|consen  121 SPLQFLSR  128 (1267)
T ss_pred             CHHHHHhh
Confidence            99988776

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.52  E-value=9.9e-08  Score=58.07  Aligned_cols=32  Identities=19%  Similarity=0.271  Sum_probs=27.7

Q ss_pred             CcccHHHHHHHcCCChhhHHHHhCCCCCCCcc
Q 041247            3 NILSGLGWVMTNGIKEAPRVLLSNGGANLSED   34 (507)
Q Consensus         3 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~   34 (507)
                      +|.||||+|+..|+.+++++|+++|++++.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            58899999999999999999999998887665

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.52  E-value=8.1e-08  Score=91.44  Aligned_cols=90  Identities=24%  Similarity=0.186  Sum_probs=84.7

Q ss_pred             ccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCC
Q 041247            5 LSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANC   84 (507)
Q Consensus         5 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~   84 (507)
                      .-++.+|++.|+...++.+.=.|.+...+|++.+|+||.||..|+.+++++|++....+.+.+ |..|+|||.-|...+|
T Consensus       507 ~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~k-DRw~rtPlDdA~~F~h  585 (622)
T KOG0506|consen  507 VINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPK-DRWGRTPLDDAKHFKH  585 (622)
T ss_pred             hhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChh-hccCCCcchHhHhcCc
Confidence            357889999999999999998999999999999999999999999999999999998898888 9999999999999999


Q ss_pred             HHHHHHHHHcC
Q 041247           85 IDFVKELLKMM   95 (507)
Q Consensus        85 ~e~v~~Ll~~~   95 (507)
                      .+++++|-+..
T Consensus       586 ~~v~k~L~~~~  596 (622)
T KOG0506|consen  586 KEVVKLLEEAQ  596 (622)
T ss_pred             HHHHHHHHHHh
Confidence            99999998873

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.50  E-value=1.5e-07  Score=57.28  Aligned_cols=31  Identities=48%  Similarity=0.597  Sum_probs=18.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCchhhcccc
Q 041247           72 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKN  104 (507)
Q Consensus        72 g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d  104 (507)
                      |+||||+|+..|+.+++++|+++  |++++.+|
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~--ga~~~~~d   32 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKH--GADINARD   32 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHT--TSCTTCBC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHC--cCCCCCCC
Confidence            55666666666666666666665  55555544

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.49  E-value=3e-07  Score=89.22  Aligned_cols=89  Identities=21%  Similarity=0.260  Sum_probs=69.1

Q ss_pred             HHhHHHHHcCCHHHHHHHHhhc-hhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHc
Q 041247           39 LKLYRAALNGDWAVAKDIYDKY-KVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAAS  117 (507)
Q Consensus        39 t~Lh~Aa~~g~~~~v~~ll~~~-~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~  117 (507)
                      .|+|+++...+.+-+...+... ...++.+ |..|+||||+|+..|+.+.++.|+..  ++++..+|+.|++|||.|+..
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~-D~~g~TpLhlAV~Lg~~~~a~~Ll~a--~Adv~~kN~~gWs~L~EAv~~   98 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRR-DPPGRTPLHLAVRLGHVEAARILLSA--GADVSIKNNEGWSPLHEAVST   98 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccc-cCCCCccHHHHHHhcCHHHHHHHHhc--CCCccccccccccHHHHHHHc
Confidence            3588888888877666544433 3345555 88888888888888888888888888  788888888888888888888


Q ss_pred             CcHHHHHHHHhcC
Q 041247          118 GMVEIVEEMMKGN  130 (507)
Q Consensus       118 g~~~iv~~Ll~~~  130 (507)
                      |+.+++..++.+.
T Consensus        99 g~~q~i~~vlr~~  111 (560)
T KOG0522|consen   99 GNEQIITEVLRHL  111 (560)
T ss_pred             CCHHHHHHHHHHh
Confidence            8888888777654

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.46  E-value=4.1e-07  Score=88.32  Aligned_cols=91  Identities=19%  Similarity=0.248  Sum_probs=77.3

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCc
Q 041247           74 TALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQ  153 (507)
Q Consensus        74 t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~  153 (507)
                      -|||.++.....+-....+.......++.+|..|+||||+|+..|+.+.++.|+.+++++ ..+|++|++|||.|+..|+
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv-~~kN~~gWs~L~EAv~~g~  100 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADV-SIKNNEGWSPLHEAVSTGN  100 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCc-cccccccccHHHHHHHcCC
Confidence            459999988876655554433125678999999999999999999999999999999997 8999999999999999999


Q ss_pred             HHHHHHHHhccc
Q 041247          154 GQMVLLLHKQTK  165 (507)
Q Consensus       154 ~~~v~~Ll~~~~  165 (507)
                      .+++..++.+..
T Consensus       101 ~q~i~~vlr~~~  112 (560)
T KOG0522|consen  101 EQIITEVLRHLK  112 (560)
T ss_pred             HHHHHHHHHHhH
Confidence            998888887643

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.44  E-value=5.9e-07  Score=86.10  Aligned_cols=84  Identities=19%  Similarity=0.171  Sum_probs=48.7

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCchhhcccc-cCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcH
Q 041247           76 LHVAAQANCIDFVKELLKMMSTEDLAKKN-KIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQG  154 (507)
Q Consensus        76 Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d-~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~  154 (507)
                      ||-.++.|+.|..--|+..  |++.|..+ ..|.||||.|++.|+..-+++|+-+|+|+ ...|.+|.||+.+|-..||-
T Consensus       137 LhasvRt~nlet~LRll~l--GA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~-~a~d~~GmtP~~~AR~~gH~  213 (669)
T KOG0818|consen  137 LHSSVRTGNLETCLRLLSL--GAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADP-GAQDSSGMTPVDYARQGGHH  213 (669)
T ss_pred             HHHHhhcccHHHHHHHHHc--ccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCC-CCCCCCCCcHHHHHHhcCch
Confidence            5666666666655555555  55555443 34556666666666666666666666664 55666666666666666665


Q ss_pred             HHHHHHHh
Q 041247          155 QMVLLLHK  162 (507)
Q Consensus       155 ~~v~~Ll~  162 (507)
                      ++.+.|++
T Consensus       214 ~laeRl~e  221 (669)
T KOG0818|consen  214 ELAERLVE  221 (669)
T ss_pred             HHHHHHHH
Confidence            55544444

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.43  E-value=8.1e-07  Score=85.17  Aligned_cols=90  Identities=23%  Similarity=0.239  Sum_probs=74.1

Q ss_pred             HhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCc
Q 041247           40 KLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGM  119 (507)
Q Consensus        40 ~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~  119 (507)
                      -||..++.|+.+..-.||.. |++.|..--..|.||||.|++.|+..-+++|+-+  |+|++..|.+|.||+.+|-..||
T Consensus       136 QLhasvRt~nlet~LRll~l-GA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vY--GAD~~a~d~~GmtP~~~AR~~gH  212 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSL-GAQANFFHPEKGNTPLHVAAKAGQILQAELLAVY--GADPGAQDSSGMTPVDYARQGGH  212 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHc-ccccCCCCcccCCchhHHHHhccchhhhhHHhhc--cCCCCCCCCCCCcHHHHHHhcCc
Confidence            48888888998887767754 7777776445688999999999998888888888  89999999999999999999999


Q ss_pred             HHHHHHHHhcCCC
Q 041247          120 VEIVEEMMKGNKD  132 (507)
Q Consensus       120 ~~iv~~Ll~~~~~  132 (507)
                      -++.+.|++.-.+
T Consensus       213 ~~laeRl~e~~y~  225 (669)
T KOG0818|consen  213 HELAERLVEIQYE  225 (669)
T ss_pred             hHHHHHHHHHHHH
Confidence            9988888875433

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.28  E-value=1.2e-06  Score=85.61  Aligned_cols=85  Identities=19%  Similarity=0.127  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCcccccccccCCCchHHHHHHhCchHHHHH
Q 041247          248 LELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIFHVAVLNRLEELFKF  327 (507)
Q Consensus       248 ~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~iv~~  327 (507)
                      +..+-.|+.+|. ....  +..-.+|.|.|+||+|++.|++.+.++|+=+|.|+ ..+|..|+|+|.||-+.+..+++..
T Consensus       637 l~t~~lLLAhg~-~~e~--~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv-~~rda~g~t~l~yar~a~sqec~d~  712 (749)
T KOG0705|consen  637 LQTAILLLAHGS-REEV--NETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDV-MARDAHGRTALFYARQAGSQECIDV  712 (749)
T ss_pred             HHHHHHHHhccC-chhh--hccccCCCCcchhhhhhhhcchhHHHHHHHhCccc-eecccCCchhhhhHhhcccHHHHHH
Confidence            667777887775 4443  23334455699999999999999999999999998 8999999999999999999999999


Q ss_pred             HHhchhhhh
Q 041247          328 IYDAKSIAD  336 (507)
Q Consensus       328 Ll~~ga~~~  336 (507)
                      |+++|...+
T Consensus       713 llq~gcp~e  721 (749)
T KOG0705|consen  713 LLQYGCPDE  721 (749)
T ss_pred             HHHcCCCcc
Confidence            999998653

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.26  E-value=2.2e-06  Score=83.76  Aligned_cols=90  Identities=22%  Similarity=0.180  Sum_probs=66.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCchhhcc--cccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcC
Q 041247           75 ALHVAAQANCIDFVKELLKMMSTEDLAK--KNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALE  152 (507)
Q Consensus        75 ~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~--~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g  152 (507)
                      -|.-|+...+...+-.||.++....++.  .+.+|+|+||+||+.|++.+.++|+=+|.|+ ..+|..|.|+|.||-+.|
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv-~~rda~g~t~l~yar~a~  705 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDV-MARDAHGRTALFYARQAG  705 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccc-eecccCCchhhhhHhhcc
Confidence            4556666777777777777753334433  3456678888888888888888888888886 778888888888888888


Q ss_pred             cHHHHHHHHhccc
Q 041247          153 QGQMVLLLHKQTK  165 (507)
Q Consensus       153 ~~~~v~~Ll~~~~  165 (507)
                      ..+++..|+++|.
T Consensus       706 sqec~d~llq~gc  718 (749)
T KOG0705|consen  706 SQECIDVLLQYGC  718 (749)
T ss_pred             cHHHHHHHHHcCC
Confidence            8888888888776

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.10  E-value=1e-05  Score=83.51  Aligned_cols=118  Identities=22%  Similarity=0.174  Sum_probs=95.6

Q ss_pred             HHHHHHHcCCChhhHHHHhCCCC----CCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHc
Q 041247            7 GLGWVMTNGIKEAPRVLLSNGGA----NLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQA   82 (507)
Q Consensus         7 ~L~~A~~~g~~~~v~~Ll~~g~~----~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~   82 (507)
                      -...|+++|+.-.|+..++....    .++.|.-|.++|+.|+.+.+.|+++.|++.. ..       . ..+|.+|++.
T Consensus        28 ~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~-~~-------~-gdALL~aI~~   98 (822)
T KOG3609|consen   28 GFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTS-SE-------E-GDALLLAIAV   98 (822)
T ss_pred             HHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCc-cc-------c-chHHHHHHHH
Confidence            45579999999999988876543    3467899999999999999999999887652 21       1 4589999999


Q ss_pred             CCHHHHHHHHHcCCchhh----------cccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCc
Q 041247           83 NCIDFVKELLKMMSTEDL----------AKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAM  135 (507)
Q Consensus        83 g~~e~v~~Ll~~~~~~~~----------~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~  135 (507)
                      |..+.|+.++.+.  ...          ...-..+-||+.+||..++.||++.|+++|..++.
T Consensus        99 ~~v~~VE~ll~~~--~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~  159 (822)
T KOG3609|consen   99 GSVPLVELLLVHF--VDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPI  159 (822)
T ss_pred             HHHHHHHHHHhcc--cccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCC
Confidence            9999999999984  221          12223467999999999999999999999998753

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.04  E-value=4.7e-06  Score=87.69  Aligned_cols=124  Identities=14%  Similarity=0.007  Sum_probs=58.2

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHH
Q 041247           69 TNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRA  148 (507)
Q Consensus        69 ~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  148 (507)
                      ...|+|.+|+++..++...++.+++.. +......|.+|.-.+|+ |..++.+.+-+++.....-.+.+|..|+||||+|
T Consensus       571 ~~r~~lllhL~a~~lyawLie~~~e~~-~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wA  648 (975)
T KOG0520|consen  571 NFRDMLLLHLLAELLYAWLIEKVIEWA-GSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHWA  648 (975)
T ss_pred             CCcchHHHHHHHHHhHHHHHHHHhccc-ccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccchH
Confidence            344555555555555555555555531 22333334444444454 3333444444443332222255555555555555


Q ss_pred             HHcCcHHHHHHHHhccc-------cccCCCChhhHHHHHHHcCChHHHHHHHh
Q 041247          149 AALEQGQMVLLLHKQTK-------NSLTDDDCIELLVQLIETGFYVVALQLLR  194 (507)
Q Consensus       149 ~~~g~~~~v~~Ll~~~~-------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  194 (507)
                      +.+|+..++..|++.++       +......|.|+-..|-.+|+..+.-+|-+
T Consensus       649 a~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse  701 (975)
T KOG0520|consen  649 AFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSE  701 (975)
T ss_pred             hhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhh
Confidence            55555555555554443       11123345555555555555555444433

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.02  E-value=4e-06  Score=88.80  Aligned_cols=83  Identities=29%  Similarity=0.318  Sum_probs=48.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHH
Q 041247           71 LGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAA  150 (507)
Q Consensus        71 ~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~  150 (507)
                      .|.|+||.|+..|..-++++|+++  ++++|..|..|+||+|.+...|+...+..|++++++. +..+.+|.+|+.+|..
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~--ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~-~a~~~~~~~~l~~a~~  731 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQN--GADVNALDSKGRTPLHHATASGHTSIACLLLKRGADP-NAFDPDGKLPLDIAME  731 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhc--CCcchhhhccCCCcchhhhhhcccchhhhhccccccc-cccCccCcchhhHHhh
Confidence            345666666666666666666666  5556666666666666666666666666666655553 5556666666666654


Q ss_pred             cCcHHH
Q 041247          151 LEQGQM  156 (507)
Q Consensus       151 ~g~~~~  156 (507)
                      ..+.++
T Consensus       732 ~~~~d~  737 (785)
T KOG0521|consen  732 AANADI  737 (785)
T ss_pred             hccccH
Confidence            444333

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.01  E-value=8.8e-06  Score=68.67  Aligned_cols=69  Identities=20%  Similarity=0.188  Sum_probs=56.5

Q ss_pred             hccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCC
Q 041247           62 VEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKD  132 (507)
Q Consensus        62 ~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~  132 (507)
                      .++|.+ |..|||||++|+..|+.+.+.+|+.++ -+++...|..|.+++.+|-+.|+.++++.|.+...+
T Consensus         3 ~~in~r-D~fgWTalmcaa~eg~~eavsyllgrg-~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e   71 (223)
T KOG2384|consen    3 GNINAR-DAFGWTALMCAAMEGSNEAVSYLLGRG-VAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE   71 (223)
T ss_pred             CCccch-hhhcchHHHHHhhhcchhHHHHHhccC-cccccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence            457777 888888888888888888888888883 278888888888888888888888888888876555

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.93  E-value=2e-05  Score=73.51  Aligned_cols=84  Identities=15%  Similarity=0.207  Sum_probs=64.8

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCc
Q 041247           74 TALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQ  153 (507)
Q Consensus        74 t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~  153 (507)
                      --|..||+.|+.+.|+.|++.  |.++|..|+....||.+|+..||.++|++|+++|+-. ..-.-+|.-. |+++-+.+
T Consensus        38 ~elceacR~GD~d~v~~LVet--gvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC-~rdtf~G~RC-~YgaLnd~  113 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVET--GVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAIC-SRDTFDGDRC-HYGALNDR  113 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHh--CCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcc-cccccCcchh-hhhhhhHH
Confidence            358899999999999999997  8999999999999999999999999999999999874 3333345444 44444332


Q ss_pred             HHHHHHHHhc
Q 041247          154 GQMVLLLHKQ  163 (507)
Q Consensus       154 ~~~v~~Ll~~  163 (507)
                        +-+.|+..
T Consensus       114 --IR~mllsy  121 (516)
T KOG0511|consen  114 --IRRMLLSY  121 (516)
T ss_pred             --HHHHHHHH
Confidence              33445544

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.91  E-value=1.7e-05  Score=83.59  Aligned_cols=129  Identities=14%  Similarity=0.017  Sum_probs=103.1

Q ss_pred             CccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHH
Q 041247           32 SEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAF  111 (507)
Q Consensus        32 ~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~L  111 (507)
                      .....|++.+|.++..++.-.++.+++..+..-..- |.+|.-.+|. |..++.+..-+++... +..++.+|..|+|||
T Consensus       569 ~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~el-d~d~qgV~hf-ca~lg~ewA~ll~~~~-~~ai~i~D~~G~tpL  645 (975)
T KOG0520|consen  569 SVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLEL-DRDGQGVIHF-CAALGYEWAFLPISAD-GVAIDIRDRNGWTPL  645 (975)
T ss_pred             cCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhh-cccCCChhhH-hhhcCCceeEEEEeec-ccccccccCCCCccc
Confidence            345678999999999999999999988533333333 7778888888 5556677777777664 788999999999999


Q ss_pred             HHHHHcCcHHHHHHHHhcCCCCC-----ccCCCCCChHHHHHHHcCcHHHHHHHHhc
Q 041247          112 FYAAASGMVEIVEEMMKGNKDIA-----MVPDMDGTLPIVRAAALEQGQMVLLLHKQ  163 (507)
Q Consensus       112 h~A~~~g~~~iv~~Ll~~~~~~~-----~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~  163 (507)
                      |+|+..|+..++..|++.+++-.     ......|.|+-..|..+|+..+..+|-+.
T Consensus       646 ~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  646 HWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             chHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            99999999999999998776632     23344688999999999999999888876

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.84  E-value=4e-05  Score=71.51  Aligned_cols=76  Identities=20%  Similarity=0.177  Sum_probs=62.5

Q ss_pred             CHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHc
Q 041247           38 RLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAAS  117 (507)
Q Consensus        38 ~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~  117 (507)
                      .--|..|++.|+.+.+++|++ .+.++|+. |....+||.+|+..||.++||+|+++  |+-...-..+|... |+++.+
T Consensus        37 f~elceacR~GD~d~v~~LVe-tgvnVN~v-D~fD~spL~lAsLcGHe~vvklLLen--GAiC~rdtf~G~RC-~YgaLn  111 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVE-TGVNVNAV-DRFDSSPLYLASLCGHEDVVKLLLEN--GAICSRDTFDGDRC-HYGALN  111 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHH-hCCCcchh-hcccccHHHHHHHcCcHHHHHHHHHc--CCcccccccCcchh-hhhhhh
Confidence            335899999999999999998 58899998 99999999999999999999999999  67665555566665 555554


Q ss_pred             C
Q 041247          118 G  118 (507)
Q Consensus       118 g  118 (507)
                      .
T Consensus       112 d  112 (516)
T KOG0511|consen  112 D  112 (516)
T ss_pred             H
Confidence            3

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.75  E-value=5.5e-05  Score=63.97  Aligned_cols=69  Identities=19%  Similarity=0.173  Sum_probs=61.8

Q ss_pred             chhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc
Q 041247           97 TEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK  165 (507)
Q Consensus        97 ~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~  165 (507)
                      +.++|.+|.+|+||+..|+..|+-+.+.+|+.+|...+...|..|.+.+.+|-+.|..+++..|.+...
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~   70 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDR   70 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhc
Confidence            467899999999999999999999999999999944458999999999999999999999999988755

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.73  E-value=2.8e-05  Score=82.49  Aligned_cols=89  Identities=19%  Similarity=0.115  Sum_probs=79.2

Q ss_pred             ccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHH
Q 041247           35 SLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYA  114 (507)
Q Consensus        35 ~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A  114 (507)
                      ..|.++||.|+..|..-.++.|++ ++++++.. |..|+||||.+...|+...+..++++  +++.+..|..|.+|+++|
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~-~ga~vn~~-d~~g~~plh~~~~~g~~~~~~~ll~~--~a~~~a~~~~~~~~l~~a  729 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQ-NGADVNAL-DSKGRTPLHHATASGHTSIACLLLKR--GADPNAFDPDGKLPLDIA  729 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHh-cCCcchhh-hccCCCcchhhhhhcccchhhhhccc--cccccccCccCcchhhHH
Confidence            467999999999999999996665 58889998 99999999999999999999999998  899999999999999999


Q ss_pred             HHcCcHHHHHHHH
Q 041247          115 AASGMVEIVEEMM  127 (507)
Q Consensus       115 ~~~g~~~iv~~Ll  127 (507)
                      ....+.+++-++.
T Consensus       730 ~~~~~~d~~~l~~  742 (785)
T KOG0521|consen  730 MEAANADIVLLLR  742 (785)
T ss_pred             hhhccccHHHHHh
Confidence            8777777666554

>smart00248 ANK ankyrin repeats

Probab=96.52  E-value=0.0029  Score=36.07  Aligned_cols=27  Identities=26%  Similarity=0.305  Sum_probs=20.0

Q ss_pred             CcccHHHHHHHcCCChhhHHHHhCCCC
Q 041247            3 NILSGLGWVMTNGIKEAPRVLLSNGGA   29 (507)
Q Consensus         3 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~   29 (507)
                      +|.||+|+|+..|+.++++.|++++.+
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            367778888777888888877777653

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.42  E-value=0.0034  Score=61.17  Aligned_cols=77  Identities=14%  Similarity=0.111  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCcccccccccCCCchHHHHHHhCchHHHHH
Q 041247          248 LELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIFHVAVLNRLEELFKF  327 (507)
Q Consensus       248 ~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~iv~~  327 (507)
                      ...+++|.+++. +.|.+.....++..-.|+||+|+.+|..++|.++|+.|+|+ ..+|..|+||.+++.   +.++-..
T Consensus       404 p~~ie~lken~l-sgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp-~~kd~~Grtpy~ls~---nkdVk~~  478 (591)
T KOG2505|consen  404 PDSIEALKENLL-SGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDP-STKDGAGRTPYSLSA---NKDVKSI  478 (591)
T ss_pred             hhHHHHHHhcCC-cccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCc-hhcccCCCCcccccc---cHHHHHH
Confidence            455666666666 55543222222222389999999999999999999999998 899999999999876   4444433


Q ss_pred             HH
Q 041247          328 IY  329 (507)
Q Consensus       328 Ll  329 (507)
                      .+
T Consensus       479 F~  480 (591)
T KOG2505|consen  479 FI  480 (591)
T ss_pred             HH
Confidence            33

>smart00248 ANK ankyrin repeats

Probab=96.19  E-value=0.0081  Score=34.06  Aligned_cols=26  Identities=31%  Similarity=0.503  Sum_probs=13.8

Q ss_pred             CCcHHHHHHHcCcHHHHHHHHhcCCC
Q 041247          107 GCTAFFYAAASGMVEIVEEMMKGNKD  132 (507)
Q Consensus       107 g~t~Lh~A~~~g~~~iv~~Ll~~~~~  132 (507)
                      |.||+|+|+..++.++++.|++.+.+
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            44555555555555555555555443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=96.16  E-value=0.078  Score=45.33  Aligned_cols=47  Identities=15%  Similarity=0.255  Sum_probs=36.6

Q ss_pred             hHHHHHHHcCcHHHHHHHHHHCcccccccccCCCchHHHHHHhCchHHHHHHHh
Q 041247          277 RLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIFHVAVLNRLEELFKFIYD  330 (507)
Q Consensus       277 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~  330 (507)
                      .-|..|+..|-...+...+++|.++ +      .++|..|+++++.+|+.+++.
T Consensus       145 ~hl~~a~~kgll~F~letlkygg~~-~------~~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  145 QHLEKAAAKGLLPFVLETLKYGGNV-D------IIVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCcc-c------HHHHHHHHHhhHHHHHHHhhc
Confidence            3467788888888888888888776 2      278888888888888887764

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.66  E-value=0.077  Score=46.75  Aligned_cols=49  Identities=12%  Similarity=0.127  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCc
Q 041247          248 LELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYA  299 (507)
Q Consensus       248 ~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~  299 (507)
                      ..++++.+++|..++|.   ..+.-.+|.|-|..|.++++.|++..|+++|+
T Consensus       230 ~kvL~~Fi~~Glv~vN~---~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  230 YKVLEYFINRGLVDVNK---KFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGA  278 (284)
T ss_pred             HHHHHHHHhccccccch---hhhccCCcchHHHhHHhcCcHHHHHHHHHcCc
Confidence            56666666666433332   11222233555555555555555555555554

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=95.56  E-value=0.26  Score=42.20  Aligned_cols=36  Identities=19%  Similarity=0.093  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHH
Q 041247          248 LELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIR  296 (507)
Q Consensus       248 ~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~  296 (507)
                      +..+...+++|- +++            .+.|..|+++++..++.+++.
T Consensus       156 l~F~letlkygg-~~~------------~~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  156 LPFVLETLKYGG-NVD------------IIVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHHHHcCC-ccc------------HHHHHHHHHhhHHHHHHHhhc
Confidence            777777777665 333            477888888888888777653

These proteins may be involved in promoting survival of infected macrophages [].

>cd07920 Pumilio Pumilio-family RNA binding domain

Probab=94.15  E-value=5.1  Score=38.76  Aligned_cols=266  Identities=13%  Similarity=0.084  Sum_probs=149.1

Q ss_pred             CccccCCHHhHHHHHcCCHHHHHHHHhhc-hhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchh-hcccccCCCc
Q 041247           32 SEDSLRRLKLYRAALNGDWAVAKDIYDKY-KVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTED-LAKKNKIGCT  109 (507)
Q Consensus        32 ~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~-~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~-~~~~d~~g~t  109 (507)
                      ..|..|.-.+..+.+.++.+....++++- +.......|..|.-.+......+..+-...+++...|.- --..|.+|.-
T Consensus        16 ~~~~~gsr~lQ~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~g~~vvq~~l~~~~~~~~~~i~~~~~~~~~~l~~~~~g~~   95 (322)
T cd07920          16 AKDQHGSRFLQQKLEEATPEEKELIFDEILPHVVELMVDPFGNYVIQKLFEHGTEEQRLQLLEKILGHVVRLSLDMYGCR   95 (322)
T ss_pred             cCCchhhHHHHHHhccCCHHHHHHHHHHHHHhHHHHhcCccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcccchhHH
Confidence            34777888888888888888777776652 222222237788888888888887776666665431111 1235667777


Q ss_pred             HHHHHHHcCcHHHHHHHHhc-CCC-CCccCCCCCChHHHHHHHcCcHHHHHHHHhccc----cccCCCChhhHHHHHHHc
Q 041247          110 AFFYAAASGMVEIVEEMMKG-NKD-IAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK----NSLTDDDCIELLVQLIET  183 (507)
Q Consensus       110 ~Lh~A~~~g~~~iv~~Ll~~-~~~-~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~----~~~~~~~g~t~L~~A~~~  183 (507)
                      .+..+...+..+....+++. .+. ..-..|..|...+..+...+..+..+.+++.-.    .-..+..|...+..+.+.
T Consensus        96 vlqkll~~~~~~~~~~i~~~l~~~~~~L~~d~~gn~Vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~G~~vvq~~l~~  175 (322)
T cd07920          96 VIQKLLESISEEQISLLVKELRGHVVELVKDQNGNHVIQKCIEKFPPEDLQFIIDAFKGNCVALSTHPYGCRVIQRCLEH  175 (322)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHCHHHHhhcccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCccccHHHHHHHHh
Confidence            77666666654433333332 111 112457778777777777766555555443322    333567777777777776


Q ss_pred             CChHHHHHHHhcC--chhhhhcccCCchHHHHHHhcCCccccccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhc
Q 041247          184 GFYVVALQLLRDR--PRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTEVVLS  261 (507)
Q Consensus       184 ~~~~~v~~Ll~~~--~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~  261 (507)
                      ...+..+.+++.-  ....-..|..|+..+..+...+..                        .....+++.+.++.. .
T Consensus       176 ~~~~~~~~l~~~l~~~~~~L~~d~~Gn~vvq~~l~~~~~------------------------~~~~~i~~~l~~~~~-~  230 (322)
T cd07920         176 CSEEQREPLLEEILEHALELVQDQFGNYVVQHVLELGDP------------------------DDTSRIIEKLLGNIV-Q  230 (322)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHhcCCH------------------------HHHHHHHHHHHHHHH-H
Confidence            5544444333321  111114577888888887777650                        111334444433322 1


Q ss_pred             cchhhHHhhhhcCCChHHHHHHHcCc----HHHHHHHHHHCc---cc-ccccccCCCchHHHHHHhCchHHHHHHH
Q 041247          262 SESVSEISKLIARPTRLIFDAAKRGN----VLFLLILIREYA---DL-MRKCDENGYTIFHVAVLNRLEELFKFIY  329 (507)
Q Consensus       262 ~~~~~~~~~~~g~g~t~Lh~A~~~g~----~~iv~~Ll~~~~---~~-~~~~d~~g~t~L~~A~~~~~~~iv~~Ll  329 (507)
                      +     ..+..|  ...+..+...+.    ..+++.++....   .. .-..|..|+-.+..+.........+.++
T Consensus       231 l-----~~~k~G--s~Vve~~l~~~~~~~~~~ii~~l~~~~~~~~~l~~l~~d~~Gn~Viq~~l~~~~~~~~~~i~  299 (322)
T cd07920         231 L-----SCHKFA--SNVVEKCLKHASKEERELIIDEILASGNETSALDTLMKDQYGNYVIQTALDVAKEEQRELLV  299 (322)
T ss_pred             H-----HcCcch--HHHHHHHHHHCCHHHHHHHHHHHhcCCCchhHHHHHhCCCcccHHHHHHHHhCCHHHHHHHH
Confidence            1     122333  566666666554    345555554321   11 1245888988888888877755444444

Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=93.98  E-value=0.044  Score=53.79  Aligned_cols=62  Identities=23%  Similarity=0.219  Sum_probs=46.8

Q ss_pred             HHHHHHHHHcCCchhhc------ccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHH
Q 041247           85 IDFVKELLKMMSTEDLA------KKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAA  149 (507)
Q Consensus        85 ~e~v~~Ll~~~~~~~~~------~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~  149 (507)
                      .+.+++|.++  +...|      ..+.---|+||+|+..|..++|.+|++.++| |..+|..|+||..++.
T Consensus       404 p~~ie~lken--~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~D-p~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKEN--LLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCD-PSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhc--CCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCC-chhcccCCCCcccccc
Confidence            6677788777  44432      2233455889999999999999999988877 5888888999988876

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=93.97  E-value=0.51  Score=41.76  Aligned_cols=49  Identities=18%  Similarity=0.163  Sum_probs=39.4

Q ss_pred             cHHHHHHHHHHCcccccc---cccCCCchHHHHHHhCchHHHHHHHhchhhh
Q 041247          287 NVLFLLILIREYADLMRK---CDENGYTIFHVAVLNRLEELFKFIYDAKSIA  335 (507)
Q Consensus       287 ~~~iv~~Ll~~~~~~~~~---~d~~g~t~L~~A~~~~~~~iv~~Ll~~ga~~  335 (507)
                      +..++++.+++|-..+|.   +-+.|.|-|+-|+++++.+++.+|+++||..
T Consensus       229 ~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  229 SYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             cHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCccc
Confidence            456788888887543343   3568999999999999999999999999953

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>cd07920 Pumilio Pumilio-family RNA binding domain

Probab=90.47  E-value=17  Score=35.02  Aligned_cols=214  Identities=8%  Similarity=-0.011  Sum_probs=131.1

Q ss_pred             cccHHHHHHHcCCChhhHHHHhCC---CCCCCccccCCHHhHHHHHcCCHHHHHHHHhhc-hhccccccCCCCCcHHHHH
Q 041247            4 ILSGLGWVMTNGIKEAPRVLLSNG---GANLSEDSLRRLKLYRAALNGDWAVAKDIYDKY-KVEIGQEITNLGNTALHVA   79 (507)
Q Consensus         4 g~t~L~~A~~~g~~~~v~~Ll~~g---~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~-~~~i~~~~~~~g~t~Lh~A   79 (507)
                      |.-.|+.+.+.+..+..+.+++.-   ......|..|+..+......+..+....+++.- +....-..+..|.-.+..+
T Consensus        21 gsr~lQ~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~g~~vvq~~l~~~~~~~~~~i~~~~~~~~~~l~~~~~g~~vlqkl  100 (322)
T cd07920          21 GSRFLQQKLEEATPEEKELIFDEILPHVVELMVDPFGNYVIQKLFEHGTEEQRLQLLEKILGHVVRLSLDMYGCRVIQKL  100 (322)
T ss_pred             hhHHHHHHhccCCHHHHHHHHHHHHHhHHHHhcCccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Confidence            444566667777766666665541   112245778888898888888877666665542 2222223377888888888


Q ss_pred             HHcCCHHHHHHHHHcCC-chhhcccccCCCcHHHHHHHcCcHHHHHHHHh----cCCCCCccCCCCCChHHHHHHHcCcH
Q 041247           80 AQANCIDFVKELLKMMS-TEDLAKKNKIGCTAFFYAAASGMVEIVEEMMK----GNKDIAMVPDMDGTLPIVRAAALEQG  154 (507)
Q Consensus        80 a~~g~~e~v~~Ll~~~~-~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~g~~  154 (507)
                      ...+..+-...+++... ...--..|..|+..+..+...+..+..+.+++    +-.++  ..+..|...+.........
T Consensus       101 l~~~~~~~~~~i~~~l~~~~~~L~~d~~gn~Vvq~~l~~~~~~~~~~i~~~l~~~~~~l--~~~~~G~~vvq~~l~~~~~  178 (322)
T cd07920         101 LESISEEQISLLVKELRGHVVELVKDQNGNHVIQKCIEKFPPEDLQFIIDAFKGNCVAL--STHPYGCRVIQRCLEHCSE  178 (322)
T ss_pred             HHhcCHHHHHHHHHHHHHCHHHHhhcccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHH--HcCccccHHHHHHHHhCCH
Confidence            88777655555554320 12223467889888888877766555444443    22222  3466787777777776544


Q ss_pred             H----HHHHHHhccccccCCCChhhHHHHHHHcCChHHHHHHHhcCchh--hhhcccCCchHHHHHHhcCC
Q 041247          155 Q----MVLLLHKQTKNSLTDDDCIELLVQLIETGFYVVALQLLRDRPRL--ATKRAENEETALHVLARKDL  219 (507)
Q Consensus       155 ~----~v~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~--~~~~d~~g~t~Lh~A~~~~~  219 (507)
                      +    +++.+.+.-..-..|..|...+..+.+.+..+..+.+++.-...  .-..++.|...+..+...+.
T Consensus       179 ~~~~~l~~~l~~~~~~L~~d~~Gn~vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~k~Gs~Vve~~l~~~~  249 (322)
T cd07920         179 EQREPLLEEILEHALELVQDQFGNYVVQHVLELGDPDDTSRIIEKLLGNIVQLSCHKFASNVVEKCLKHAS  249 (322)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHCC
Confidence            3    44444443324456889999999998888765555554442111  12467888888877777665

Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=89.48  E-value=0.79  Score=33.67  Aligned_cols=48  Identities=15%  Similarity=0.207  Sum_probs=40.3

Q ss_pred             ChHHHHHHHcCcHHHHHHHHHHCcccccccccCCCchHHHHHHhCchHHHHHHHhc
Q 041247          276 TRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIFHVAVLNRLEELFKFIYDA  331 (507)
Q Consensus       276 ~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~  331 (507)
                      ...+..|+..|+.|+++.+++.+ .+    +   ...+..|++..+.+++++|++.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~-~~----~---~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKN-KP----D---NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHh-cc----H---HHHHHHHHHHhhHHHHHHHHHh
Confidence            56789999999999999999764 22    1   4579999999999999999976

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=86.74  E-value=1.4  Score=32.28  Aligned_cols=20  Identities=15%  Similarity=0.175  Sum_probs=9.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHc
Q 041247           75 ALHVAAQANCIDFVKELLKM   94 (507)
Q Consensus        75 ~Lh~Aa~~g~~e~v~~Ll~~   94 (507)
                      .+..|+...+-|++++|+++
T Consensus        35 ~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen   35 CLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhhHHHHHHHHHh
Confidence            34444444444444444443

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	507
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-06
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		6e-06
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-05
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		6e-05
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		1e-04
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		5e-04
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		1e-04
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		2e-04
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		2e-04
2xee_A	157	Structural Determinants For Improved Thermal Stabil		2e-04
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-04
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		4e-04
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		6e-04
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		6e-04

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 68/150 (45%), Gaps = 5/150 (3%)
Query: 14  NGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGN 73
           NG K+  + LL NG    + DS  R  L+ AA NG   + K +  K      ++    G 
Sbjct: 14  NGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSD--GR 71
Query: 74  TALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDI 133
           T LH AA+    + VK LL   +  D   K+  G T   YAA +G  EIV+ ++    D 
Sbjct: 72  TPLHYAAENGHKEIVKLLLSKGA--DPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGAD- 128
Query: 134 AMVPDMDGTLPIVRAAALEQGQMVLLLHKQ 163
               D DG  P+  A      ++V LL KQ
Sbjct: 129 PNTSDSDGRTPLDLAREHGNEEIVKLLEKQ 158

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 73/150 (48%), Gaps = 5/150 (3%)
Query: 14  NGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGN 73
           NG K+  + L+ NG    + DS  R  L+ AA NG   V K +  K   ++  + ++ G 
Sbjct: 14  NGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKG-ADVNAKDSD-GR 71
Query: 74  TALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDI 133
           T LH AA+    + VK L+   +  D+  K+  G T   +AA +G  E+V+ ++    D+
Sbjct: 72  TPLHHAAENGHKEVVKLLISKGA--DVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADV 129
Query: 134 AMVPDMDGTLPIVRAAALEQGQMVLLLHKQ 163
               D DG  P+  A      ++V LL KQ
Sbjct: 130 -NTSDSDGRTPLDLAREHGNEEVVKLLEKQ 158

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 71/150 (47%), Gaps = 5/150 (3%)
Query: 14  NGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGN 73
           NG K+  + L+ NG    + DS  R  L+ AA  G   + K +  K   ++  + ++ G 
Sbjct: 14  NGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKG-ADVNAKDSD-GR 71
Query: 74  TALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDI 133
           T LH AA+    + VK L+   +  D+  K+  G T   YAA  G  EIV+ ++    D+
Sbjct: 72  TPLHYAAKEGHKEIVKLLISKGA--DVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADV 129
Query: 134 AMVPDMDGTLPIVRAAALEQGQMVLLLHKQ 163
               D DG  P+  A      ++V LL KQ
Sbjct: 130 -NTSDSDGRTPLDLAREHGNEEIVKLLEKQ 158

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 4/119 (3%)
Query: 15  GIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNT 74
           G  +  R+L++NG    + D   R  L+ AA  G   + + +  +   ++    TN G T
Sbjct: 13  GQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVE-VLLRNGADVNAVDTN-GTT 70
Query: 75  ALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDI 133
            LH+AA    ++ V+ LLK  +  D+  K+  G T  + AA  G +EIVE ++K   D+
Sbjct: 71  PLHLAASLGHLEIVEVLLKYGA--DVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADV 127

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 4/119 (3%)
Query: 15  GIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNT 74
           G  +  R+L++NG    + D L    L+ AA  G   + + +  KY  ++     N G T
Sbjct: 25  GQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVE-VLLKYGADV-NAWDNYGAT 82
Query: 75  ALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDI 133
            LH+AA    ++ V+ LLK  +  D+  K+  G T    AA  G +EIVE ++K   D+
Sbjct: 83  PLHLAADNGHLEIVEVLLKHGA--DVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADV 139

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 71  LGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGN 130
           LG+T LH+AA+   ++ V+ LLK  +  D+   +  G T    AA +G +EIVE ++K  
Sbjct: 46  LGHTPLHLAAKTGHLEIVEVLLKYGA--DVNAWDNYGATPLHLAADNGHLEIVEVLLKHG 103
Query: 131 KDIAMVPDMDGTLPIVRAA 149
            D+    D +G  P+  AA
Sbjct: 104 ADV-NAKDYEGFTPLHLAA 121

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 72  GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNK 131
           G T LH+AA+   ++ V+ LLK  +  D+  K+K G T    AA  G +EIVE ++K   
Sbjct: 35  GYTPLHLAAREGHLEIVEVLLKAGA--DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 92
Query: 132 DIAMVPDMDGTLPIVRAA 149
           D+    D DG  P+  AA
Sbjct: 93  DV-NAKDKDGYTPLHLAA 109

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 4/119 (3%)
Query: 15  GIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNT 74
           G  +  R+L++NG    +ED   +  L+ AA+ G   + + +  K+  ++      +G+T
Sbjct: 25  GQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVE-VLLKHGADV-NAADKMGDT 82
Query: 75  ALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDI 133
            LH+AA    ++ V+ LLK  +  D+   +  G T    AA +G +EIVE ++K   D+
Sbjct: 83  PLHLAALYGHLEIVEVLLK--NGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADV 139

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 72  GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNK 131
           G T LH+AA+   ++ V+ LLK  +  D+  K+K G T    AA  G +EIVE ++K   
Sbjct: 47  GYTPLHLAAREGHLEIVEVLLKAGA--DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 104
Query: 132 DIAMVPDMDGTLPIVRAA 149
           D+    D DG  P+  AA
Sbjct: 105 DV-NAKDKDGYTPLHLAA 121

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 72  GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNK 131
           G T LH+AA+   ++ V+ LLK  +  D+  K+K G T    AA  G +EIVE ++K   
Sbjct: 35  GYTPLHLAAREGHLEIVEVLLKAGA--DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 92
Query: 132 DIAMVPDMDGTLPIVRAA 149
           D+    D DG  P+  AA
Sbjct: 93  DV-NAKDKDGYTPLHLAA 109

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 68/150 (45%), Gaps = 5/150 (3%)
Query: 14  NGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGN 73
           NG K+  + LL NG    + DS  +  L+ AA NG   V K +  +      ++    G 
Sbjct: 14  NGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSD--GK 71
Query: 74  TALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDI 133
           T LH+AA+    + VK LL   +  D   K+  G T    AA +G  E+V+ ++    D 
Sbjct: 72  TPLHLAAENGHKEVVKLLLSQGA--DPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGAD- 128
Query: 134 AMVPDMDGTLPIVRAAALEQGQMVLLLHKQ 163
               D DG  P+  A      ++V LL KQ
Sbjct: 129 PNTSDSDGRTPLDLAREHGNEEVVKLLEKQ 158

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 70  NLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKG 129
           N G T LH+AA    ++ V+ LLK  +  D+   +  G T    AAA+G +EIVE ++K 
Sbjct: 45  NDGYTPLHLAASNGHLEIVEVLLK--NGADVNASDLTGITPLHLAAATGHLEIVEVLLKH 102
Query: 130 NKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQ 163
             D+    D DG  P+  AA     ++V +L K 
Sbjct: 103 GADVNAY-DNDGHTPLHLAAKYGHLEIVEVLLKH 135

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 70  NLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKG 129
           N G T LH+AA +  ++ V+ LLK  +  D+   +  G T    AA  G +EIVE ++K 
Sbjct: 45  NTGTTPLHLAAYSGHLEIVEVLLKHGA--DVDASDVFGYTPLHLAAYWGHLEIVEVLLKN 102
Query: 130 NKDIAMVPDMDGTLPIVRAA 149
             D+  + D DG  P+  AA
Sbjct: 103 GADVNAM-DSDGMTPLHLAA 121

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 10/119 (8%)
Query: 14  NGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEIT---N 70
           NG  E  ++LL  G    ++D   R  L+ AA NG   V K +     +E G ++     
Sbjct: 12  NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL-----LEAGADVNAKDK 66
Query: 71  LGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKG 129
            G T LH+AA+   ++ VK LL+  +  D+  K+K G T    AA +G +E+V+ +++ 
Sbjct: 67  NGRTPLHLAARNGHLEVVKLLLE--AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 123

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	507
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	8e-14
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-09
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-06
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-12
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-11
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	8e-09
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-06
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-12
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	7e-11
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	9e-10
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-09
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-07
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	5e-12
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-10
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-08
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-06
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-04
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-11
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-08
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-08
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-11
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-10
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-10
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-10
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-06
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-05
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-11
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-10
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-09
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-08
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-06
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-11
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	7e-04
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	7e-11
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-06
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-05
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-04
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-10
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-09
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-07
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-05
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-10
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-05
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-05
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-10
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-08
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-07
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-04
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-10
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	6e-07
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-04
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-10
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-10
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-09
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-06
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-04
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-10
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-10
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-08
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-08
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-10
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-07
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	8e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-10
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-09
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-09
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-09
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-09
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-08
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-08
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-07
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-04
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-10
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	5e-08
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-05
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-04
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-10
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	9e-05
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-04
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-10
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-09
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-08
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	8e-07
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-06
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-06
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-06
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-05
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-10
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	6e-10
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-09
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-07
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-04
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-04
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-10
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-09
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-07
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-04
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-10
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-09
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-07
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-04
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-10
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-10
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-07
3v30_A	172	DNA-binding protein rfxank; structural genomics co	9e-05
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	5e-10
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	6e-10
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-08
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	7e-10
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	7e-08
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	5e-04
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	7e-10
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-09
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	6e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	9e-10
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-08
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-06
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-05
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	9e-10
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	8e-06
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-05
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-09
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	4e-07
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-06
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-09
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	7e-09
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-08
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-07
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-06
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-09
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-09
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-09
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-07
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-06
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-05
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-09
3jxi_A	260	Vanilloid receptor-related osmotically activated p	6e-06
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-09
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	9e-09
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-08
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-07
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-04
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-09
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-08
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-07
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-07
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-09
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	7e-09
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-09
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-08
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-08
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-05
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-09
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-08
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-08
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	9e-08
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	9e-04
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-09
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-08
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-08
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	9e-08
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	9e-05
2rfa_A	232	Transient receptor potential cation channel subfa	6e-09
2rfa_A	232	Transient receptor potential cation channel subfa	9e-09
2rfa_A	232	Transient receptor potential cation channel subfa	9e-08
2rfa_A	232	Transient receptor potential cation channel subfa	1e-07
2rfa_A	232	Transient receptor potential cation channel subfa	1e-05
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-08
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-08
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	9e-08
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-07
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-05
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-08
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	8e-08
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-07
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-07
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	8e-08
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-07
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-05
2etb_A	256	Transient receptor potential cation channel subfam	2e-07
2etb_A	256	Transient receptor potential cation channel subfam	1e-06
2etb_A	256	Transient receptor potential cation channel subfam	2e-05
2pnn_A	273	Transient receptor potential cation channel subfa	3e-07
2pnn_A	273	Transient receptor potential cation channel subfa	4e-06
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	6e-07
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	5e-06
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	7e-06
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	3e-04
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-05
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-05
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-05
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	8e-04
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	4e-04

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 70.0 bits (172), Expect = 8e-14
 Identities = 29/212 (13%), Positives = 71/212 (33%), Gaps = 18/212 (8%)

Query: 14  NGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEI---TN 70
             +++     +++G   +  + L    L  ++L G++ +      +  +    +     +
Sbjct: 15  TNLRKTGSERIAHG-MRVKFNPLPLALLLDSSLEGEFDLV-----QRIIYEVDDPSLPND 68

Query: 71  LGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGN 130
            G TALH A  A   + VK L++     ++   +  G T    AA+   V++ + +++  
Sbjct: 69  EGITALHNAVCAGHTEIVKFLVQFGV--NVNAADSDGWTPLHCAASCNNVQVCKFLVESG 126

Query: 131 KDIAMVPDMDGTLPIVRAAALEQGQM----VLLLHKQTKNSLTDDDCIELLVQLIETGFY 186
             +  +   D      +   +E+G       L   ++    +       L     +    
Sbjct: 127 AAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDE 186

Query: 187 VVALQLLRDRPRLATKRAENEETALHVLARKD 218
              L +          R + +E         D
Sbjct: 187 ---LPMKEGDCMTIIHREDEDEIEWWWARLND 215

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 57.2 bits (139), Expect = 2e-09
 Identities = 16/86 (18%), Positives = 28/86 (32%), Gaps = 9/86 (10%)

Query: 41  LYRAALNGDWAVAKDIYDKYKVEIGQEI--TNLGNTALHVAAQANCIDFVKELLKMMSTE 98
           L                   ++  G  +    L    L  ++     D V+ ++  +   
Sbjct: 9   LPPGKRTNLRKTGS-----ERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVD-- 61

Query: 99  DLAKKNKIGCTAFFYAAASGMVEIVE 124
           D +  N  G TA   A  +G  EIV+
Sbjct: 62  DPSLPNDEGITALHNAVCAGHTEIVK 87

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 47.2 bits (113), Expect = 3e-06
 Identities = 8/53 (15%), Positives = 18/53 (33%), Gaps = 3/53 (5%)

Query: 72  GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
           G  +L    + N      E +   +     K N +       ++  G  ++V+
Sbjct: 5   GQVSLPPGKRTNLRKTGSERI---AHGMRVKFNPLPLALLLDSSLEGEFDLVQ 54

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 66.5 bits (163), Expect = 1e-12
 Identities = 20/111 (18%), Positives = 37/111 (33%), Gaps = 9/111 (8%)

Query: 14  NGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGN 73
                 P  L    G  +    +     ++    G   +    Y   +           +
Sbjct: 22  TFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQ-------AESID 74

Query: 74  TALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
             LH AA+   + +++E L       +   +K G TA ++A   G  +IVE
Sbjct: 75  NPLHEAAKRGNLSWLRECLDNRV--GVNGLDKAGSTALYWACHGGHKDIVE 123

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 63.8 bits (156), Expect = 1e-11
 Identities = 27/137 (19%), Positives = 51/137 (37%), Gaps = 6/137 (4%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLG 72
            G     R  L N    ++  D      LY A   G   + + ++ +  +E+  +   LG
Sbjct: 83  RGNLSWLRECLDNR-VGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNKLG 140

Query: 73  NTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKD 132
           +TALH AA     D V+ LL   +      +N     AF  A  +    ++++    +  
Sbjct: 141 DTALHAAAWKGYADIVQLLLAKGA--RTDLRNIEKKLAFDMATNAACASLLKKKQGTDAV 198

Query: 133 IAMVPDMDGTLPIVRAA 149
             +  + +  L    + 
Sbjct: 199 RTLS-NAEDYLDDEDSD 214

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 54.9 bits (133), Expect = 8e-09
 Identities = 12/87 (13%), Positives = 32/87 (36%), Gaps = 9/87 (10%)

Query: 38  RLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMST 97
           ++K++RA    +     ++Y + + +I   IT++ +T             +         
Sbjct: 13  QVKVFRALYTFEPRTPDELYIE-EGDI-IYITDMSDTNWWKGTSKGRTGLIPSN------ 64

Query: 98  EDLAKKNKIGCTAFFYAAASGMVEIVE 124
             +A++ +        AA  G +  + 
Sbjct: 65  -YVAEQAESIDNPLHEAAKRGNLSWLR 90

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 7/61 (11%), Positives = 16/61 (26%), Gaps = 2/61 (3%)

Query: 72  GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNK 131
           G   +  A          EL       D+     +  T ++   + G   ++       +
Sbjct: 12  GQVKVFRALYTFEPRTPDELYI--EEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQ 69

Query: 132 D 132
            
Sbjct: 70  A 70

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 65.2 bits (160), Expect = 3e-12
 Identities = 21/119 (17%), Positives = 38/119 (31%), Gaps = 15/119 (12%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAK-------DIYDKYKVEIG 65
           N   +   +L S   + L + D   R+ L+ +       +         ++       + 
Sbjct: 13  NEFFKVQELLHSKP-SLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV------NLD 65

Query: 66  QEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
               + G T  H+A     ++ VK L       DL K    G T    A      E+ +
Sbjct: 66  DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 61.3 bits (150), Expect = 7e-11
 Identities = 21/116 (18%), Positives = 42/116 (36%), Gaps = 11/116 (9%)

Query: 14  NGIKEAPRVLLSNG-GANLSE-DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEI--- 68
            G  E  + L       +L++  +     L+ A     + V++     + +E G  +   
Sbjct: 82  VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ-----FLIENGASVRIK 136

Query: 69  TNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
                  LH AA    +  ++ L   +    +  ++K G T  F+A A G  +   
Sbjct: 137 DKFNQIPLHRAASVGSLKLIELLCG-LGKSAVNWQDKQGWTPLFHALAEGHGDAAV 191

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 57.8 bits (141), Expect = 9e-10
 Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 9/116 (7%)

Query: 14  NGIKEAPRVLLSNGGANLSEDSLRRLK----LYRAALNGDWAVAKDIYDK-YKVEIGQEI 68
               E    LLS    N++ D           + A   G+  V K +YD+  K ++  +I
Sbjct: 46  FQAHEITSFLLSKM-ENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL-NKI 103

Query: 69  TNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
           TN G T LH+A      +  + L++  +   +  K+K        AA+ G ++++E
Sbjct: 104 TNQGVTCLHLAVGKKWFEVSQFLIE--NGASVRIKDKFNQIPLHRAASVGSLKLIE 157

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 57.1 bits (139), Expect = 2e-09
 Identities = 21/112 (18%), Positives = 37/112 (33%), Gaps = 8/112 (7%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLG 72
               E  + L+ NG A++   D   ++ L+RAA  G   + + +    K  +       G
Sbjct: 117 KKWFEVSQFLIENG-ASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAV-NWQDKQG 174

Query: 73  NTALHVAAQANCIDFVKELLKMMSTE--DLAKKNKIGCTAFFYAAASGMVEI 122
            T L  A      D    L+        +    +  G  A   A    + + 
Sbjct: 175 WTPLFHALAEGHGDAAVLLV---EKYGAEYDLVDNKGAKAEDVALNEQVKKF 223

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 50.1 bits (121), Expect = 4e-07
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 71  LGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
           + N  LH A   N    V+ELL       L +K++ G     ++ +    EI  
Sbjct: 1   MSNYPLHQACMENEFFKVQELL-HSKPSLLLQKDQDGRIPLHWSVSFQAHEITS 53

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 62.8 bits (154), Expect = 5e-12
 Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 19/118 (16%)

Query: 14  NGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAK-------DIYDKYKVEIGQ 66
            G  +  R+L++N GA  + D L    L+ AA  G ++  +           +       
Sbjct: 12  AGQDDEVRILMAN-GAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR------- 63

Query: 67  EITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
             T +  T LH+AA     + V+ LLK  +  D+  K+ +  TA  +A      E+VE
Sbjct: 64  --TKVDRTPLHMAASEGHANIVEVLLKHGA--DVNAKDMLKMTALHWATEHNHQEVVE 117

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 58.9 bits (144), Expect = 1e-10
 Identities = 29/119 (24%), Positives = 46/119 (38%), Gaps = 20/119 (16%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAK-------DIYDKYKVEIG 65
            G      VLL  G  +      + R  L+ AA  G   + +       D+  K      
Sbjct: 44  YGHFSTTEVLLRAG-VSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAK------ 96

Query: 66  QEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
                L  TALH A + N  + V+ L+K     D+  ++K   TAF  +  +G  ++ E
Sbjct: 97  ---DMLKMTALHWATEHNHQEVVELLIK--YGADVHTQSKFCKTAFDISIDNGNEDLAE 150

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 51.6 bits (125), Expect = 4e-08
 Identities = 23/86 (26%), Positives = 32/86 (37%), Gaps = 9/86 (10%)

Query: 41  LYRAALNGDWAVAKDIYDKYKVEIGQEIT--NLGNTALHVAAQANCIDFVKELLKMMSTE 98
           L  AA  G     +       +  G   T   LG + LH+AAQ       + LL+     
Sbjct: 6   LLEAARAGQDDEVR-----ILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGV-- 58

Query: 99  DLAKKNKIGCTAFFYAAASGMVEIVE 124
               + K+  T    AA+ G   IVE
Sbjct: 59  SRDARTKVDRTPLHMAASEGHANIVE 84

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 47.4 bits (114), Expect = 1e-06
 Identities = 12/58 (20%), Positives = 18/58 (31%), Gaps = 13/58 (22%)

Query: 72  GNTALHVAAQANCIDFVKELLKMMSTEDLAK-----KNKIGCTAFFYAAASGMVEIVE 124
               L  AA+A   D V+ L+                + +G +    AA  G     E
Sbjct: 2   LGKKLLEAARAGQDDEVRILMA--------NGAPFTTDWLGTSPLHLAAQYGHFSTTE 51

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 40.8 bits (97), Expect = 2e-04
 Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 19/88 (21%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAK-------DIYDKYKVEIG 65
            G      VLL +G A+++  D L+   L+ A  +    V +       D++ +      
Sbjct: 77  EGHANIVEVLLKHG-ADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQ------ 129

Query: 66  QEITNLGNTALHVAAQANCIDFVKELLK 93
              +    TA  ++      D   E+L+
Sbjct: 130 ---SKFCKTAFDISIDNGNEDLA-EILQ 153

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 61.6 bits (151), Expect = 2e-11
 Identities = 23/119 (19%), Positives = 40/119 (33%), Gaps = 19/119 (15%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAK-------DIYDKYKVEIG 65
            G  E  + L +    N  + +  +   L+ AA     +V +       D++ K      
Sbjct: 18  AGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK------ 71

Query: 66  QEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
                 G   LH A      +  + L+K  +   +   +    T    AAA G  EI +
Sbjct: 72  ---DKGGLVPLHNACSYGHYEVAELLVKHGA--VVNVADLWKFTPLHEAAAKGKYEICK 125

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 52.8 bits (128), Expect = 2e-08
 Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 5/97 (5%)

Query: 28  GANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDF 87
           GA  + ++    +L  AA  GD    K +     V   ++I    +T LH AA  N +  
Sbjct: 1   GAMGNSEA--DRQLLEAAKAGDVETVKKLCTVQSVNC-RDIEGRQSTPLHFAAGYNRVSV 57

Query: 88  VKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
           V+ LL+  +  D+  K+K G      A + G  E+ E
Sbjct: 58  VEYLLQHGA--DVHAKDKGGLVPLHNACSYGHYEVAE 92

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 51.6 bits (125), Expect = 4e-08
 Identities = 26/119 (21%), Positives = 40/119 (33%), Gaps = 21/119 (17%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAK-------DIYDKYKVEIG 65
                    LL +G A++   D    + L+ A   G + VA+        +         
Sbjct: 52  YNRVSVVEYLLQHG-ADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVA------ 104

Query: 66  QEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
                   T LH AA     +  K LL+  +  D  KKN+ G T        G  +I +
Sbjct: 105 ---DLWKFTPLHEAAAKGKYEICKLLLQHGA--DPTKKNRDGNTP-LDLVKDGDTDIQD 157

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 62.9 bits (154), Expect = 4e-11
 Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 6/115 (5%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEI---T 69
            G  E  ++LL   GA+++  D++ R  L  A L+ D +  + I     ++ G ++    
Sbjct: 158 KGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAIT-HLLLDHGADVNVRG 216

Query: 70  NLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
             G T L +A +   +  V+ LL+     ++   +  G TA   A    + +I E
Sbjct: 217 ERGKTPLILAVEKKHLGLVQRLLEQEHI-EINDTDSDGKTALLLAVELKLKKIAE 270

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 59.8 bits (146), Expect = 3e-10
 Identities = 27/123 (21%), Positives = 45/123 (36%), Gaps = 18/123 (14%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEI---T 69
              ++   +LL +G A+              AA+ G   + K       +  G ++    
Sbjct: 49  MSREDIVELLLRHG-ADPVLRKKNGATPFLLAAIAGSVKLLK-----LFLSKGADVNECD 102

Query: 70  NLGNTALHVAAQANCIDFVKELL--------KMMSTEDLAKKNKIGCTAFFYAAASGMVE 121
             G TA   AA    +  +K L         +  + ED  +  K G TA   AA  G VE
Sbjct: 103 FYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE 162

Query: 122 IVE 124
           +++
Sbjct: 163 VLK 165

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 59.4 bits (145), Expect = 5e-10
 Identities = 26/120 (21%), Positives = 43/120 (35%), Gaps = 21/120 (17%)

Query: 14  NGIKEAPRVLLSNGGA--NLSEDSLRRLKLYRAALNGDWAVAK-------DIYDKYKVEI 64
           N   +  + LL  G A  N  E+      L+ A       + +       D   +     
Sbjct: 15  NEDVDLVQQLLEGG-ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR----- 68

Query: 65  GQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
                  G T   +AA A  +  +K  L   +  D+ + +  G TAF  AA  G V+ ++
Sbjct: 69  ----KKNGATPFLLAAIAGSVKLLKLFLSKGA--DVNECDFYGFTAFMEAAVYGKVKALK 122

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 59.0 bits (144), Expect = 7e-10
 Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 11/124 (8%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAK-------DIYDKYKVEIG 65
            G  +  ++ LS G A+++E D         AA+ G     K       ++  + K +  
Sbjct: 82  AGSVKLLKLFLSKG-ADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKED 140

Query: 66  QE-ITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
           QE +   G TAL  AA+   ++ +K LL  M   D+   + +G  A  +A  S     VE
Sbjct: 141 QERLRKGGATALMDAAEKGHVEVLKILLDEMGA-DVNACDNMGRNALIHALLSSDDSDVE 199

Query: 125 EMMK 128
            +  
Sbjct: 200 AITH 203

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 47.9 bits (115), Expect = 3e-06
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 72  GNTALHVAAQANCIDFVKELLKM-MSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
            N  L  A Q   +D V++LL+   +     ++ + G T    A      +IVE
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEGGANVN--FQEEEGGWTPLHNAVQMSREDIVE 56

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 44.4 bits (106), Expect = 5e-05
 Identities = 15/81 (18%), Positives = 35/81 (43%), Gaps = 3/81 (3%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLG 72
           + ++    +LL +G A+++      +  L  A       + + + ++  +EI  +  + G
Sbjct: 196 SDVEAITHLLLDHG-ADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEI-NDTDSDG 253

Query: 73  NTALHVAAQANCIDFVKELLK 93
            TAL +A +       + L K
Sbjct: 254 KTALLLAVELKLKKIAELLCK 274

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 62.0 bits (152), Expect = 4e-11
 Identities = 29/115 (25%), Positives = 42/115 (36%), Gaps = 11/115 (9%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEI---T 69
            G  E  + LLSNG  +++  D      +  A       + K       +  G +I    
Sbjct: 87  KGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVK-----LLLSKGSDINIRD 141

Query: 70  NLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
           N  N  LH AA + C+D  + LL      DL   N  G +    AA     + V 
Sbjct: 142 NEENICLHWAAFSGCVDIAEILLAAKC--DLHAVNIHGDSPLHIAARENRYDCVV 194

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 60.1 bits (147), Expect = 2e-10
 Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 11/115 (9%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEI---T 69
            G  +   +L+  G AN+      +R  L  AA N      K     Y ++ G  +    
Sbjct: 21  AGHVDICHMLVQAG-ANIDTCSEDQRTPLMEAAENNHLEAVK-----YLIKAGALVDPKD 74

Query: 70  NLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
             G+T LH+AA+    + V+ LL      D+  ++  G T   +A     V++V+
Sbjct: 75  AEGSTCLHLAAKKGHYEVVQYLLSNGQM-DVNCQDDGGWTPMIWATEYKHVDLVK 128

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 57.0 bits (139), Expect = 2e-09
 Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 12/125 (9%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEI---T 69
               +  ++LLS G ++++  D+   + L+ AA +G   +A+       +    ++    
Sbjct: 121 YKHVDLVKLLLSKG-SDINIRDNEENICLHWAAFSGCVDIAE-----ILLAAKCDLHAVN 174

Query: 70  NLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKG 129
             G++ LH+AA+ N  D V   L   S  D+  KNK G T    A+ +  V    +M K 
Sbjct: 175 IHGDSPLHIAARENRYDCVVLFLSRDS--DVTLKNKEGETPLQCASLNSQVWSALQMSKA 232

Query: 130 NKDIA 134
            +D A
Sbjct: 233 LQDSA 237

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 54.0 bits (131), Expect = 2e-08
 Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 10/87 (11%)

Query: 41  LYRAALNGDWAVAKDIYDKYKVEIGQEI---TNLGNTALHVAAQANCIDFVKELLKMMST 97
           L+ AA  G   +         V+ G  I   +    T L  AA+ N ++ VK L+K  + 
Sbjct: 15  LHAAAEAGHVDICH-----MLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGA- 68

Query: 98  EDLAKKNKIGCTAFFYAAASGMVEIVE 124
             +  K+  G T    AA  G  E+V+
Sbjct: 69  -LVDPKDAEGSTCLHLAAKKGHYEVVQ 94

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 48.6 bits (117), Expect = 1e-06
 Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 72  GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
             + LH AA+A  +D    L++  +  ++   ++   T    AA +  +E V+
Sbjct: 11  KRSPLHAAAEAGHVDICHMLVQ--AGANIDTCSEDQRTPLMEAAENNHLEAVK 61

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 63.8 bits (155), Expect = 4e-11
 Identities = 22/130 (16%), Positives = 48/130 (36%), Gaps = 11/130 (8%)

Query: 41  LYRAALNGDWAVAKDIYDKYKVEIG---QEITNLGNTALHVAAQANCIDFVKELLKMMST 97
            + AA+ G  +    +     +      + I      A  +AA+   +  +  L ++  T
Sbjct: 96  CFVAAITGCSSALDTL--CLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPT 153

Query: 98  EDLAKKNKIGCTAFFYAAASGMVEIVEEMMK--GNKDIAMVPDMDGTLPIVRAAALEQG- 154
           E +A        AF  AA +G + ++  + +    +  AM+   +        AA+ +G 
Sbjct: 154 EIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRW--AAVGRGH 211

Query: 155 -QMVLLLHKQ 163
             ++  L   
Sbjct: 212 HNVINFLLDC 221

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 40.7 bits (95), Expect = 7e-04
 Identities = 13/92 (14%), Positives = 25/92 (27%), Gaps = 13/92 (14%)

Query: 72  GNTALHVAAQANC---IDFVKELLKMMSTEDLAKKN---KIGCTAFFYAAASGMVEIVEE 125
           G   L    + N    +D ++ LL +   + LA               A   G       
Sbjct: 278 GFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACAL 337

Query: 126 M--MKGNKDIA-----MVPDMDGTLPIVRAAA 150
           +  +     +       + +  G L +   A 
Sbjct: 338 LLSIPSVLALTKANNYYINETGGRLDLRAVAL 369

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 59.7 bits (146), Expect = 7e-11
 Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 11/115 (9%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEI---T 69
            G  E  R LL  G AN    D      ++ AA  G     +       +E   ++    
Sbjct: 47  LGNPEIARRLLLRG-ANPDLKDRTGFAVIHDAARAGFLDTLQ-----TLLEFQADVNIED 100

Query: 70  NLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
           N GN  LH+AA+   +  V+ L+K  +  ++  +N  G TA   A   G  E+V 
Sbjct: 101 NEGNLPLHLAAKEGHLRVVEFLVKHTA-SNVGHRNHKGDTACDLARLYGRNEVVS 154

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 45.8 bits (110), Expect = 4e-06
 Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 3/57 (5%)

Query: 68  ITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
           +       L  AA    ++ +  LL+  +  ++  +N  G TA       G  EI  
Sbjct: 1   MAEPWGNELASAAARGDLEQLTSLLQ--NNVNVNAQNGFGRTA-LQVMKLGNPEIAR 54

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 44.3 bits (106), Expect = 1e-05
 Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 11/87 (12%)

Query: 41  LYRAALNGDWAVAKDIYDKYKVEIGQEI---TNLGNTALHVAAQANCIDFVKELLKMMST 97
           L  AA  GD            ++    +      G TAL V       +  + LL   + 
Sbjct: 9   LASAAARGDLEQLT-----SLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGA- 61

Query: 98  EDLAKKNKIGCTAFFYAAASGMVEIVE 124
            +   K++ G      AA +G ++ ++
Sbjct: 62  -NPDLKDRTGFAVIHDAARAGFLDTLQ 87

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 41.2 bits (98), Expect = 2e-04
 Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 19/89 (21%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAK--------DIYDKYKVEI 64
            G  +  + LL    A+++  D+   L L+ AA  G   V +        ++  +     
Sbjct: 80  AGFLDTLQTLLEFQ-ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR----- 133

Query: 65  GQEITNLGNTALHVAAQANCIDFVKELLK 93
                + G+TA  +A      + V  +  
Sbjct: 134 ----NHKGDTACDLARLYGRNEVVSLMQA 158

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 58.5 bits (143), Expect = 1e-10
 Identities = 38/115 (33%), Positives = 59/115 (51%), Gaps = 12/115 (10%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEI---T 69
           NG  E  ++LL  G A+++  D   R  L+ AA NG   V K       +E G ++    
Sbjct: 12  NGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVK-----LLLEAGADVNAKD 65

Query: 70  NLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
             G T LH+AA+   ++ VK LL+  +  D+  K+K G T    AA +G +E+V+
Sbjct: 66  KNGRTPLHLAARNGHLEVVKLLLEAGA--DVNAKDKNGRTPLHLAARNGHLEVVK 118

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 54.7 bits (133), Expect = 2e-09
 Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 10/87 (11%)

Query: 41  LYRAALNGDWAVAKDIYDKYKVEIGQEI---TNLGNTALHVAAQANCIDFVKELLKMMST 97
           L+ AA NG   V K       +E G ++      G T LH+AA+   ++ VK LL+  + 
Sbjct: 6   LHLAARNGHLEVVK-----LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE--AG 58

Query: 98  EDLAKKNKIGCTAFFYAAASGMVEIVE 124
            D+  K+K G T    AA +G +E+V+
Sbjct: 59  ADVNAKDKNGRTPLHLAARNGHLEVVK 85

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 49.3 bits (119), Expect = 1e-07
 Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 2/53 (3%)

Query: 72  GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
           G T LH+AA+   ++ VK LL+  +  D+  K+K G T    AA +G +E+V+
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGA--DVNAKDKNGRTPLHLAARNGHLEVVK 52

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 42.3 bits (101), Expect = 3e-05
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 10/84 (11%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEI---T 69
           NG  E  ++LL  G A+++  D   R  L+ AA NG   V K       +E G ++    
Sbjct: 45  NGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVK-----LLLEAGADVNAKD 98

Query: 70  NLGNTALHVAAQANCIDFVKELLK 93
             G T LH+AA+   ++ VK LL+
Sbjct: 99  KNGRTPLHLAARNGHLEVVKLLLE 122

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 60.7 bits (147), Expect = 1e-10
 Identities = 28/152 (18%), Positives = 59/152 (38%), Gaps = 3/152 (1%)

Query: 67  EITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEM 126
                  TALH A  A   + V+ LL++     +  K+  G +    AA++G  EIV+ +
Sbjct: 35  RTDQDSRTALHWACSAGHTEIVEFLLQLGV--PVNDKDDAGWSPLHIAASAGXDEIVKAL 92

Query: 127 MKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTKNSLTDDDCIELLVQLIETGFY 186
           +     +    + +G  P+  AA+  + ++ ++L +   N    D      +        
Sbjct: 93  LVKGAHVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGN 151

Query: 187 VVALQLLRDRPRLATKRAENEETALHVLARKD 218
           +  + +L         +     T LH+   ++
Sbjct: 152 LKMVHILLFYKASTNIQDTEGNTPLHLACDEE 183

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 24/149 (16%), Positives = 51/149 (34%), Gaps = 7/149 (4%)

Query: 72  GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEM-MKG- 129
                ++A      +  + +L         + ++   TA  +A ++G  EIVE +   G 
Sbjct: 7   NIMICNLAYSGKLDELKERILA--DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGV 64

Query: 130 NKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTKNSLTDDDCIELLVQLIETGFYVVA 189
             +     D  G  P+  AA+    ++V  L  +  +    +      +    +      
Sbjct: 65  PVNDK---DDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEI 121

Query: 190 LQLLRDRPRLATKRAENEETALHVLARKD 218
             +L +       +   + TA+H  A K 
Sbjct: 122 AVMLLEGGANPDAKDHYDATAMHRAAAKG 150

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 23/122 (18%), Positives = 43/122 (35%), Gaps = 12/122 (9%)

Query: 6   SGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIG 65
           + L +  +    E   +LL  G    ++D      ++RAA  G+  +         +   
Sbjct: 108 TPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVH-----ILLFYK 162

Query: 66  QEIT---NLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEI 122
                    GNT LH+A     ++  K L+       +  +NK   T    A   G + +
Sbjct: 163 ASTNIQDTEGNTPLHLACDEERVEEAKFLVT--QGASIYIENKEEKTPLQVAK--GGLGL 218

Query: 123 VE 124
           + 
Sbjct: 219 IL 220

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 59.3 bits (145), Expect = 1e-10
 Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 12/115 (10%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEI---T 69
           NG  E   VLL NG A+++  D      L  AAL G   + +       ++ G ++    
Sbjct: 57  NGHLEIVEVLLKNG-ADVNAVDHAGMTPLRLAALFGHLEIVE-----VLLKNGADVNAND 110

Query: 70  NLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
             G+T LH+AA    ++ V+ LLK  +  D+  ++K G TAF  +  +G  ++ E
Sbjct: 111 MEGHTPLHLAAMFGHLEIVEVLLKNGA--DVNAQDKFGKTAFDISIDNGNEDLAE 163

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 52.0 bits (126), Expect = 4e-08
 Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 10/88 (11%)

Query: 40  KLYRAALNGDWAVAKDIYDKYKVEIGQEI---TNLGNTALHVAAQANCIDFVKELLKMMS 96
           KL  AA  G     +       +  G ++      G T LH+AA    ++ V+ LLK  +
Sbjct: 17  KLLEAARAGRDDEVR-----ILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGA 71

Query: 97  TEDLAKKNKIGCTAFFYAAASGMVEIVE 124
             D+   +  G T    AA  G +EIVE
Sbjct: 72  --DVNAVDHAGMTPLRLAALFGHLEIVE 97

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 50.8 bits (123), Expect = 1e-07
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 72  GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
               L  AA+A   D V+ L+   +  D+  ++  G T    AA +G +EIVE
Sbjct: 14  LGKKLLEAARAGRDDEVRILMA--NGADVNAEDASGWTPLHLAAFNGHLEIVE 64

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 41.2 bits (98), Expect = 2e-04
 Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 10/84 (11%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEI---T 69
            G  E   VLL NG A+++  D      L+ AA+ G   + +       ++ G ++    
Sbjct: 90  FGHLEIVEVLLKNG-ADVNANDMEGHTPLHLAAMFGHLEIVE-----VLLKNGADVNAQD 143

Query: 70  NLGNTALHVAAQANCIDFVKELLK 93
             G TA  ++      D  + L K
Sbjct: 144 KFGKTAFDISIDNGNEDLAEILQK 167

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 58.2 bits (142), Expect = 1e-10
 Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 20/119 (16%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAK-------DIYDKYKVEIG 65
            G  +  R+L++NG A+++  D      LY A  +G   + +       D+         
Sbjct: 24  AGQDDEVRILMANG-ADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV------ 76

Query: 66  QEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
                +G T LH+AA    ++  + LLK     D+  ++K G TAF  +  +G  ++ E
Sbjct: 77  ---DAIGFTPLHLAAFIGHLEIAEVLLK--HGADVNAQDKFGKTAFDISIGNGNEDLAE 130

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 47.8 bits (115), Expect = 6e-07
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 72  GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
               L  AA+A   D V+ L+   +  D+  K++ G T  + A A G +EIVE
Sbjct: 14  LGKKLLEAARAGQDDEVRILMA--NGADVNAKDEYGLTPLYLATAHGHLEIVE 64

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 40.1 bits (95), Expect = 3e-04
 Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 18/88 (20%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAK-------DIYDKYKVEIG 65
           +G  E   VLL NG A+++  D++    L+ AA  G   +A+       D+  +      
Sbjct: 57  HGHLEIVEVLLKNG-ADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQ------ 109

Query: 66  QEITNLGNTALHVAAQANCIDFVKELLK 93
                 G TA  ++      D  + L K
Sbjct: 110 ---DKFGKTAFDISIGNGNEDLAEILQK 134

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 60.1 bits (147), Expect = 1e-10
 Identities = 23/120 (19%), Positives = 46/120 (38%), Gaps = 21/120 (17%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAK--------DIYDKYKVEI 64
               +A + LL    A+ +  D++ R  L+ A       V +        D+        
Sbjct: 35  YSRSDAAKRLLEAS-ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDL-------- 85

Query: 65  GQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
                + G T L +AA+      +++L+   +  D+   + +G +A  +AAA   V+   
Sbjct: 86  -DARMHDGTTPLILAARLAVEGMLEDLINSHA--DVNAVDDLGKSALHWAAAVNNVDAAV 142

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 59.0 bits (144), Expect = 4e-10
 Identities = 26/119 (21%), Positives = 41/119 (34%), Gaps = 19/119 (15%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAK-------DIYDKYKVEIG 65
              +   ++L+ N   +L          L  AA      + +       D+         
Sbjct: 68  ADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV------ 121

Query: 66  QEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
               +LG +ALH AA  N +D    LLK  +  +   +N    T  F AA  G  E  +
Sbjct: 122 ---DDLGKSALHWAAAVNNVDAAVVLLKNGA--NKDMQNNREETPLFLAAREGSYETAK 175

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 56.6 bits (138), Expect = 2e-09
 Identities = 19/119 (15%), Positives = 40/119 (33%), Gaps = 20/119 (16%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAK-------DIYDKYKVEIG 65
             ++     L+++  A+++  D L +  L+ AA   +   A        +   +      
Sbjct: 102 LAVEGMLEDLINSH-ADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQ------ 154

Query: 66  QEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
               N   T L +AA+    +  K LL   +  +    + +       A      +IV 
Sbjct: 155 ---NNREETPLFLAAREGSYETAKVLLDHFA--NRDITDHMDRLPRDIAQERMHHDIVR 208

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 48.6 bits (117), Expect = 1e-06
 Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 64  IGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIV 123
           +  +    G TALH+AA+ +  D  K LL+  ++ D   ++ +G T    A ++    + 
Sbjct: 17  LHNQTDRTGETALHLAARYSRSDAAKRLLE--ASADANIQDNMGRTPLHAAVSADAQGVF 74

Query: 124 E 124
           +
Sbjct: 75  Q 75

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 42.0 bits (100), Expect = 2e-04
 Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 18/87 (20%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAK-------DIYDKYKVEIG 65
               +A  VLL NG AN    ++     L+ AA  G +  AK       +          
Sbjct: 135 VNNVDAAVVLLKNG-ANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDIT------ 187

Query: 66  QEITNLGNTALHVAAQANCIDFVKELL 92
               ++      +A +    D V+ L 
Sbjct: 188 ---DHMDRLPRDIAQERMHHDIVRLLD 211

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 59.4 bits (145), Expect = 1e-10
 Identities = 29/119 (24%), Positives = 45/119 (37%), Gaps = 19/119 (15%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAK-------DIYDKYKVEIG 65
            G   A R+ L N   +L++ D      L+ A   G  AV +        I         
Sbjct: 15  EGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM------ 68

Query: 66  QEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
                  +T LH+AA     D V++LL+  +  D+   N+ G     YA   G  ++ E
Sbjct: 69  ---NRGDDTPLHLAASHGHRDIVQKLLQYKA--DINAVNEHGNVPLHYACFWGQDQVAE 122

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 58.6 bits (143), Expect = 2e-10
 Identities = 23/113 (20%), Positives = 43/113 (38%), Gaps = 8/113 (7%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAKD-IYDKYKVEIGQEITNL 71
            G      +L+  G A ++  +      L+ AA +G   + +  +  +YK +I   +   
Sbjct: 49  EGRSAVVEMLIMRG-ARINVMNRGDDTPLHLAASHGHRDIVQKLL--QYKADI-NAVNEH 104

Query: 72  GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
           GN  LH A         ++L+   +   ++  NK G      A A     + E
Sbjct: 105 GNVPLHYACFWGQDQVAEDLVA--NGALVSICNKYGEMPVDKAKAPLRELLRE 155

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 54.0 bits (131), Expect = 1e-08
 Identities = 15/84 (17%), Positives = 34/84 (40%), Gaps = 3/84 (3%)

Query: 41  LYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDL 100
           ++     G+    +   D  + ++  +  + G + LH A +      V+ L+   +   +
Sbjct: 9   IFTQCREGNAVAVRLWLDNTENDL-NQGDDHGFSPLHWACREGRSAVVEMLIMRGA--RI 65

Query: 101 AKKNKIGCTAFFYAAASGMVEIVE 124
              N+   T    AA+ G  +IV+
Sbjct: 66  NVMNRGDDTPLHLAASHGHRDIVQ 89

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 52.0 bits (126), Expect = 5e-08
 Identities = 9/56 (16%), Positives = 19/56 (33%), Gaps = 1/56 (1%)

Query: 69  TNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
           +      +    +      V+  L   +  DL + +  G +   +A   G   +VE
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLD-NTENDLNQGDDHGFSPLHWACREGRSAVVE 56

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 56.2 bits (137), Expect = 2e-10
 Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 10/87 (11%)

Query: 41  LYRAALNGDWAVAKDIYDKYKVEIGQEI---TNLGNTALHVAAQANCIDFVKELLKMMST 97
           L+ AA NG   V K       +E G ++      G T LH+AA+   ++ VK LL+  + 
Sbjct: 6   LHLAARNGHLEVVK-----LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA- 59

Query: 98  EDLAKKNKIGCTAFFYAAASGMVEIVE 124
            D+  K+K G T    AA +G +E+V+
Sbjct: 60  -DVNAKDKNGRTPLHLAARNGHLEVVK 85

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 48.5 bits (117), Expect = 1e-07
 Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 2/53 (3%)

Query: 72  GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
           G T LH+AA+   ++ VK LL+  +  D+  K+K G T    AA +G +E+V+
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGA--DVNAKDKNGRTPLHLAARNGHLEVVK 52

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 40.4 bits (96), Expect = 8e-05
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 10/84 (11%)

Query: 14 NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEI---T 69
          NG  E  ++LL  G A+++  D   R  L+ AA NG   V K       +E G ++    
Sbjct: 12 NGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVK-----LLLEAGADVNAKD 65

Query: 70 NLGNTALHVAAQANCIDFVKELLK 93
            G T LH+AA+   ++ VK LL+
Sbjct: 66 KNGRTPLHLAARNGHLEVVKLLLE 89

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 61.4 bits (150), Expect = 3e-10
 Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 12/115 (10%)

Query: 14  NGIKEAPRVLLSNGGANL-SEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEI---T 69
            G  E  + LL N  A + ++    +  L+ AA  G   + K       +E        T
Sbjct: 57  AGHTEVAKYLLQNK-AKVNAKAKDDQTPLHCAARIGHTNMVK-----LLLENNANPNLAT 110

Query: 70  NLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
             G+T LH+AA+   ++ V  LL+  +    A   K G T    AA  G V + E
Sbjct: 111 TAGHTPLHIAAREGHVETVLALLEKEA--SQACMTKKGFTPLHVAAKYGKVRVAE 163

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 59.0 bits (144), Expect = 1e-09
 Identities = 41/167 (24%), Positives = 56/167 (33%), Gaps = 20/167 (11%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEI---T 69
            G  E    LL    A+ +         L+ AA  G   VA+       +E         
Sbjct: 123 EGHVETVLALLEKE-ASQACMTKKGFTPLHVAAKYGKVRVAE-----LLLERDAHPNAAG 176

Query: 70  NLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKG 129
             G T LHVA   N +D VK LL              G T    AA    VE+   +++ 
Sbjct: 177 KNGLTPLHVAVHHNNLDIVKLLLPRGG--SPHSPAWNGYTPLHIAAKQNQVEVARSLLQY 234

Query: 130 NKDIAMVPDMDGTLPIVRAAALEQGQMVLLL-------HKQTKNSLT 169
                    + G  P+  AA     +MV LL       +   K+ LT
Sbjct: 235 GGSA-NAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLT 280

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 59.0 bits (144), Expect = 1e-09
 Identities = 30/119 (25%), Positives = 40/119 (33%), Gaps = 20/119 (16%)

Query: 14  NGIKEAPRVLLSNGGANL-SEDSLRRLKLYRAALNGDWAVAK-------DIYDKYKVEIG 65
            G     + LL  G A+    +      L+ AA  G   VAK        +  K      
Sbjct: 24  MGHLPIVKNLLQRG-ASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAK------ 76

Query: 66  QEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
                   T LH AA+    + VK LL+  +  +       G T    AA  G VE V 
Sbjct: 77  ---AKDDQTPLHCAARIGHTNMVKLLLENNA--NPNLATTAGHTPLHIAAREGHVETVL 130

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 57.5 bits (140), Expect = 4e-09
 Identities = 25/115 (21%), Positives = 46/115 (40%), Gaps = 12/115 (10%)

Query: 14  NGIKEAPRVLLSNGGANL-SEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEI---T 69
            G      VL+ +G   + +   +    L+ A+  G+  + K     + ++   ++   T
Sbjct: 288 EGHVPVADVLIKHG-VMVDATTRMGYTPLHVASHYGNIKLVK-----FLLQHQADVNAKT 341

Query: 70  NLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
            LG + LH AAQ    D V  LLK  +     + +  G T    A   G + + +
Sbjct: 342 KLGYSPLHQAAQQGHTDIVTLLLKNGA--SPNEVSSDGTTPLAIAKRLGYISVTD 394

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 57.5 bits (140), Expect = 4e-09
 Identities = 34/112 (30%), Positives = 47/112 (41%), Gaps = 6/112 (5%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLG 72
            G  E   +LLS   AN +  +      L+  A  G   VA  +     V +    T +G
Sbjct: 255 EGHAEMVALLLSKQ-ANGNLGNKSGLTPLHLVAQEGHVPVADVLIKH-GVMV-DATTRMG 311

Query: 73  NTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
            T LHVA+    I  VK LL+     D+  K K+G +    AA  G  +IV 
Sbjct: 312 YTPLHVASHYGNIKLVKFLLQ--HQADVNAKTKLGYSPLHQAAQQGHTDIVT 361

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 54.4 bits (132), Expect = 4e-08
 Identities = 27/115 (23%), Positives = 43/115 (37%), Gaps = 12/115 (10%)

Query: 14  NGIKEAPRVLLSNGGANL-SEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEI---T 69
           +   +  ++LL  G  +  S        L+ AA      VA+       ++ G      +
Sbjct: 189 HNNLDIVKLLLPRG-GSPHSPAWNGYTPLHIAAKQNQVEVAR-----SLLQYGGSANAES 242

Query: 70  NLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
             G T LH+AAQ    + V  LL   +  +    NK G T     A  G V + +
Sbjct: 243 VQGVTPLHLAAQEGHAEMVALLLSKQA--NGNLGNKSGLTPLHLVAQEGHVPVAD 295

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 53.7 bits (130), Expect = 7e-08
 Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 10/87 (11%)

Query: 41  LYRAALNGDWAVAKDIYDKYKVEIGQEI---TNLGNTALHVAAQANCIDFVKELLKMMST 97
           L+ A+  G   + K       ++ G           T LH+AA+A   +  K LL+  + 
Sbjct: 18  LHVASFMGHLPIVK-----NLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKA- 71

Query: 98  EDLAKKNKIGCTAFFYAAASGMVEIVE 124
             +  K K   T    AA  G   +V+
Sbjct: 72  -KVNAKAKDDQTPLHCAARIGHTNMVK 97

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 51.7 bits (125), Expect = 3e-07
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 69  TNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
              G T LHVA+    +  VK LL+  +       N    T    AA +G  E+ +
Sbjct: 11  GESGLTPLHVASFMGHLPIVKNLLQRGA--SPNVSNVKVETPLHMAARAGHTEVAK 64

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 42.9 bits (102), Expect = 2e-04
 Identities = 23/131 (17%), Positives = 48/131 (36%), Gaps = 25/131 (19%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEI---T 69
            G  +  + LL +  A+++    L    L++AA  G   +         ++ G      +
Sbjct: 321 YGNIKLVKFLLQHQ-ADVNAKTKLGYSPLHQAAQQGHTDIVT-----LLLKNGASPNEVS 374

Query: 70  NLGNTALHVAAQANCIDFVKELLKMMS-TEDLAKKNKIGCTAFFYAAASGMVEIVEEMM- 127
           + G T L +A +   I     L  +   T  +   +K   +           E V+E++ 
Sbjct: 375 SDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSF---------PETVDEILD 425

Query: 128 ----KGNKDIA 134
               +G + I+
Sbjct: 426 VSEDEGEELIS 436

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 57.8 bits (141), Expect = 3e-10
 Identities = 28/118 (23%), Positives = 44/118 (37%), Gaps = 13/118 (11%)

Query: 11  VMTNGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEI- 68
           VM  G       LL  G A+ +  D+     ++ AA  G     K       VE G ++ 
Sbjct: 42  VMMFGSTAIALELLKQG-ASPNVQDTSGTSPVHDAARTGFLDTLK-----VLVEHGADVN 95

Query: 69  --TNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
                G   +H+A Q      V  L    +  DL +++  G T    A   G  ++V+
Sbjct: 96  VPDGTGALPIHLAVQEGHTAVVSFLA---AESDLHRRDARGLTPLELALQRGAQDLVD 150

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 51.3 bits (124), Expect = 5e-08
 Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 4/84 (4%)

Query: 41  LYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDL 100
           L  AA  GD    + +  +  V     +   G TAL V           ELLK  +    
Sbjct: 6   LSGAAARGDVQEVRRLLHRELVHP-DALNRFGKTALQVMMF-GSTAIALELLKQGA--SP 61

Query: 101 AKKNKIGCTAFFYAAASGMVEIVE 124
             ++  G +    AA +G ++ ++
Sbjct: 62  NVQDTSGTSPVHDAARTGFLDTLK 85

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 44.3 bits (106), Expect = 1e-05
 Identities = 12/53 (22%), Positives = 15/53 (28%), Gaps = 2/53 (3%)

Query: 72  GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
               L  AA    +  V+ LL           N+ G TA       G   I  
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELV-HPDALNRFGKTA-LQVMMFGSTAIAL 52

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 41.6 bits (99), Expect = 1e-04
 Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 17/87 (19%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAK------DIYDKYKVEIGQ 66
            G  +  +VL+ +G A+++  D    L ++ A   G  AV        D++ +       
Sbjct: 78  TGFLDTLKVLVEHG-ADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLHRR------- 129

Query: 67  EITNLGNTALHVAAQANCIDFVKELLK 93
                G T L +A Q    D V  L  
Sbjct: 130 --DARGLTPLELALQRGAQDLVDILQG 154

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 59.2 bits (144), Expect = 3e-10
 Identities = 38/209 (18%), Positives = 61/209 (29%), Gaps = 22/209 (10%)

Query: 21  RVLLSNGGANLSEDSLRRLK----LYRAALNGDWAVAKDIYDKYKVEIGQEI---TNLGN 73
           R +L     +  +    RL     L  AAL G+  V +       V+   +       G 
Sbjct: 2   RSVLRKA-GSPRKARRARLNPLVLLLDAALTGELEVVQ-----QAVKEMNDPSQPNEEGI 55

Query: 74  TALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDI 133
           TALH A        V  L+   +  ++   +  G T    AA+     I   +++    I
Sbjct: 56  TALHNAICGANYSIVDFLITAGA--NVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAI 113

Query: 134 AMVPDMDGTLPIVRAAALEQGQM----VLLLHKQTKNSLTDDDCIELLVQLIETGFYVVA 189
                 DG     +     +G       L   +Q+   +       L     E   +   
Sbjct: 114 FATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAE---FGDE 170

Query: 190 LQLLRDRPRLATKRAENEETALHVLARKD 218
           L           +R   EET     A   
Sbjct: 171 LSFREGESVTVLRRDGPEETDWWWAALHG 199

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 43.0 bits (102), Expect = 9e-05
 Identities = 25/144 (17%), Positives = 44/144 (30%), Gaps = 35/144 (24%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAV------------AKDIYD-- 58
                    L++ G AN++  DS     L+ AA   D  +            A  + D  
Sbjct: 64  GANYSIVDFLITAG-ANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGA 122

Query: 59  -----------------KYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTE-DL 100
                             Y  ++ Q +  L N+    A      +F  EL         +
Sbjct: 123 TAFEKCDPYREGYADCATYLADVEQSM-GLMNSGAVYALWDYSAEFGDELSFREGESVTV 181

Query: 101 AKKNKIGCTAFFYAAASGMVEIVE 124
            +++    T +++AA  G    V 
Sbjct: 182 LRRDGPEETDWWWAALHGQEGYVP 205

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 37/258 (14%), Positives = 66/258 (25%), Gaps = 90/258 (34%)

Query: 72  GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNK 131
               L  AA    ++ V++ +K M+  D ++ N+ G TA   A               N 
Sbjct: 21  PLVLLLDAALTGELEVVQQAVKEMN--DPSQPNEEGITALHNAI-----------CGANY 67

Query: 132 DIAMV----------PDMDGTLPIVRAAALEQGQMVLLLHKQTKNSLTDDDCIELLVQLI 181
            I             PD  G  P+  AA              + N          L   +
Sbjct: 68  SIVDFLITAGANVNSPDSHGWTPLHCAA--------------SCNDT---VICMAL---V 107

Query: 182 ETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEK 241
           + G  + A                +  TA             +      +  C    A+ 
Sbjct: 108 QHGAAIFA------------TTLSDGATAFE------KCDPYRE----GYADCATYLADV 145

Query: 242 EENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADL 301
           E++   +                              ++D +       L     E   +
Sbjct: 146 EQSMGLMN--SGAVY---------------------ALWDYSA-EFGDELSFREGESVTV 181

Query: 302 MRKCDENGYTIFHVAVLN 319
           +R+ D    T +  A L+
Sbjct: 182 LRR-DGPEETDWWWAALH 198

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 60.7 bits (148), Expect = 3e-10
 Identities = 20/115 (17%), Positives = 40/115 (34%), Gaps = 7/115 (6%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEI---T 69
               E  ++L+  G A+ +  D      L RA    +      + D    +    +    
Sbjct: 150 PEYLEMIKILVQLG-ASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYAN 208

Query: 70  NLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
             GN+ LH A   N  D     ++M    D+  ++       + +  + MV + +
Sbjct: 209 KQGNSHLHWAILINWEDVAMRFVEMGI--DVNMEDNEHTVPLYLSVRAAMVLLTK 261

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 57.2 bits (139), Expect = 4e-09
 Identities = 20/119 (16%), Positives = 33/119 (27%), Gaps = 28/119 (23%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAK-------DIYDKYKVEIG 65
            G  +  R L+  G  + +  +      L+ A   G    AK            +     
Sbjct: 30  KGQTDEVRRLIETG-VSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWH----- 83

Query: 66  QEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
                 G   +H+A  AN  D V  L++           + G             E+ E
Sbjct: 84  ------GQKPIHLAVMANKTDLVVALVE--------GAKERGQMPESLLNECDEREVNE 128

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 53.7 bits (130), Expect = 6e-08
 Identities = 28/161 (17%), Positives = 47/161 (29%), Gaps = 45/161 (27%)

Query: 58  DKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAAS 117
           D  K+    +  +     +HVAA+    D V+ L++         +N+ GCTA   A   
Sbjct: 7   DFPKLNR-IKSDDENMEKIHVAARKGQTDEVRRLIETGV--SPTIQNRFGCTALHLACKF 63

Query: 118 GMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTKNSLTDDDCIELL 177
           G V+  + +    +  +      G  PI  A                 N     D +   
Sbjct: 64  GCVDTAKYLASVGEVHS---LWHGQKPIHLAVM--------------ANKT---DLVVA- 102

Query: 178 VQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKD 218
             L+E                      E  +    +L   D
Sbjct: 103 --LVEGA-------------------KERGQMPESLLNECD 122

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 50.3 bits (121), Expect = 8e-07
 Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 14/88 (15%)

Query: 41  LYRAALNGDWAVAKDIYDKYKVEIGQEI---TNLGNTALHVAAQANCIDFVKELLKMMST 97
           ++ AA  G     +       +E G         G TALH+A +  C+D  K L  +   
Sbjct: 24  IHVAARKGQTDEVR-----RLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVG-- 76

Query: 98  EDLAKKN-KIGCTAFFYAAASGMVEIVE 124
                 +   G      A  +   ++V 
Sbjct: 77  ---EVHSLWHGQKPIHLAVMANKTDLVV 101

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 48.7 bits (117), Expect = 2e-06
 Identities = 11/123 (8%), Positives = 34/123 (27%), Gaps = 15/123 (12%)

Query: 14  NGIKEAPRVLLSNGGANL-SEDSLRRLKLYRAALNGDWAVAK--------DIYDKYKVEI 64
              ++     +  G  ++  ED+   + LY +       + K         +        
Sbjct: 221 INWEDVAMRFVEMG-IDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHN 279

Query: 65  GQEI---TNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVE 121
           G  +     +    +  AA  +  + ++ L + +   ++ +    G              
Sbjct: 280 GTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLD--EVVRSLNTGAGGAVKRKKKAAPA 337

Query: 122 IVE 124
           +  
Sbjct: 338 VKR 340

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 48.3 bits (116), Expect = 3e-06
 Identities = 21/130 (16%), Positives = 41/130 (31%), Gaps = 24/130 (18%)

Query: 14  NGIKEAPRVLLSNG----GANLSE-DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEI 68
              +EA  +++          L   +      L+ A L     VA        VE+G ++
Sbjct: 183 FRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAM-----RFVEMGIDV 237

Query: 69  ---TNLGNTALHVAAQANCIDFVKELL-----------KMMSTEDLAKKNKIGCTAFFYA 114
               N     L+++ +A  +   KELL              +   +     +       A
Sbjct: 238 NMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAA 297

Query: 115 AASGMVEIVE 124
           A     E+++
Sbjct: 298 ADPSKQEVLQ 307

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 47.9 bits (115), Expect = 4e-06
 Identities = 16/114 (14%), Positives = 34/114 (29%), Gaps = 20/114 (17%)

Query: 14  NGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEI-TNLG 72
               +    L+        +               +    +++      EIG  +    G
Sbjct: 94  ANKTDLVVALVEGA-KERGQMPE-----SLLNECDE----REV-----NEIGSHVKHCKG 138

Query: 73  NTALHVAAQA--NCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
            TALH         ++ +K L+++ +      K+K   T    A      E ++
Sbjct: 139 QTALHWCVGLGPEYLEMIKILVQLGA--SPTAKDKADETPLMRAMEFRNREALD 190

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 45.6 bits (109), Expect = 2e-05
 Identities = 11/92 (11%), Positives = 25/92 (27%), Gaps = 10/92 (10%)

Query: 26  NGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEI---TNLGNTALHVAAQA 82
           NG   L +  +    +  AA      V +        E   E+    N G        + 
Sbjct: 279 NGTTVLPDRVVWLDFVPAAADPSKQEVLQ-----LLQEKLDEVVRSLNTGAGGAVKRKKK 333

Query: 83  NCIDFVKELLKMMSTEDLAKKNKIGCTAFFYA 114
                 +  L    +  +  +++    +   +
Sbjct: 334 AAPAVKRMKLA--PSAPVRTRSRSRARSSAVS 363

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 59.4 bits (145), Expect = 4e-10
 Identities = 26/119 (21%), Positives = 42/119 (35%), Gaps = 19/119 (15%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAK-------DIYDKYKVEIG 65
              +   ++L+ N   +L          L  AA      + +       D+         
Sbjct: 100 ADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV--------- 150

Query: 66  QEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
             + +LG +ALH AA  N +D    LLK  +  +   +N    T  F AA  G  E  +
Sbjct: 151 NAVDDLGKSALHWAAAVNNVDAAVVLLKNGA--NKDMQNNREETPLFLAAREGSYETAK 207

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 59.0 bits (144), Expect = 6e-10
 Identities = 23/120 (19%), Positives = 46/120 (38%), Gaps = 21/120 (17%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAK--------DIYDKYKVEI 64
               +A + LL    A+ +  D++ R  L+ A       V +        D+        
Sbjct: 67  YSRSDAAKRLLEAS-ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDL-------- 117

Query: 65  GQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
                + G T L +AA+      +++L+   +  D+   + +G +A  +AAA   V+   
Sbjct: 118 -DARMHDGTTPLILAARLAVEGMLEDLINSHA--DVNAVDDLGKSALHWAAAVNNVDAAV 174

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 57.9 bits (141), Expect = 1e-09
 Identities = 27/131 (20%), Positives = 41/131 (31%), Gaps = 20/131 (15%)

Query: 3   NILSGLGWVMTNGIKEAPRVLLSNGGANLS--EDSLRRLKLYRAALNGDWAVAK------ 54
             L                  +  G A+L    D      L+ AA       AK      
Sbjct: 22  GGLETGNSEEEEDAPAVISDFIYQG-ASLHNQTDRTGETALHLAARYSRSDAAKRLLEAS 80

Query: 55  -DIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFY 113
            D   +          N+G T LH A  A+     + L++  +T DL  +   G T    
Sbjct: 81  ADANIQ---------DNMGRTPLHAAVSADAQGVFQILIRNRAT-DLDARMHDGTTPLIL 130

Query: 114 AAASGMVEIVE 124
           AA   +  ++E
Sbjct: 131 AARLAVEGMLE 141

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 51.3 bits (124), Expect = 2e-07
 Identities = 20/115 (17%), Positives = 41/115 (35%), Gaps = 12/115 (10%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEI---T 69
             ++     L+++  A+++  D L +  L+ AA   +   A        ++ G       
Sbjct: 134 LAVEGMLEDLINSH-ADVNAVDDLGKSALHWAAAVNNVDAAV-----VLLKNGANKDMQN 187

Query: 70  NLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
           N   T L +AA+    +  K LL   +  +    + +       A      +IV 
Sbjct: 188 NREETPLFLAAREGSYETAKVLLDHFA--NRDITDHMDRLPRDIAQERMHHDIVR 240

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 42.5 bits (101), Expect = 2e-04
 Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 18/87 (20%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAK-------DIYDKYKVEIG 65
               +A  VLL NG AN    ++     L+ AA  G +  AK       +          
Sbjct: 167 VNNVDAAVVLLKNG-ANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDIT------ 219

Query: 66  QEITNLGNTALHVAAQANCIDFVKELL 92
               ++      +A +    D V+ L 
Sbjct: 220 ---DHMDRLPRDIAQERMHHDIVRLLD 243

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 40.9 bits (97), Expect = 4e-04
 Identities = 9/69 (13%), Positives = 21/69 (30%), Gaps = 14/69 (20%)

Query: 69  TNLGNTALHVAA-------------QANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAA 115
              G T L +A+             + +    + + +         + ++ G TA   AA
Sbjct: 7   GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIY-QGASLHNQTDRTGETALHLAA 65

Query: 116 ASGMVEIVE 124
                +  +
Sbjct: 66  RYSRSDAAK 74

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 58.2 bits (142), Expect = 4e-10
 Identities = 24/119 (20%), Positives = 41/119 (34%), Gaps = 20/119 (16%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAK-------DIYDKYKVEIG 65
            G++ A   L+ N    L + D      L  A  N    +A+       ++  K      
Sbjct: 45  LGMENAIDKLVENF-DKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTK------ 97

Query: 66  QEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
                 G T L  +      +    LL+  +  ++  +N  G T    A+  G  EIV+
Sbjct: 98  ---DFSGKTPLMWSIIFGYSEMSYFLLEHGA--NVNDRNLEGETPLIVASKYGRSEIVK 151

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 57.0 bits (139), Expect = 1e-09
 Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 12/115 (10%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEI---T 69
           N        LLS G +N++  D   +  L  + + G   ++      + +E G  +    
Sbjct: 78  NNRLGIAEKLLSKG-SNVNTKDFSGKTPLMWSIIFGYSEMSY-----FLLEHGANVNDRN 131

Query: 70  NLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
             G T L VA++    + VK+LL++ +  D++ ++  G TA   A   G  E+++
Sbjct: 132 LEGETPLIVASKYGRSEIVKKLLELGA--DISARDLTGLTAEASARIFGRQEVIK 184

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 50.1 bits (121), Expect = 2e-07
 Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 70  NLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
           +   T L VA      + + +L++      L  K+  G TA  +A  +  + I E
Sbjct: 33  SYNRTPLMVACMLGMENAIDKLVENFD--KLEDKDIEGSTALIWAVKNNRLGIAE 85

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 42.4 bits (101), Expect = 1e-04
 Identities = 8/63 (12%), Positives = 19/63 (30%), Gaps = 14/63 (22%)

Query: 65  GQEITNLGNTALHVAAQANC---IDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVE 121
           G  +   G     +  + +    +DF++             ++    T    A   GM  
Sbjct: 1   GSHMDKNGEIVEKIKDEKSINQNLDFLRN-----------YRDSYNRTPLMVACMLGMEN 49

Query: 122 IVE 124
            ++
Sbjct: 50  AID 52

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 57.4 bits (140), Expect = 4e-10
 Identities = 26/115 (22%), Positives = 40/115 (34%), Gaps = 12/115 (10%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEI---T 69
           +G       LL NG A+       R   L  A   G   + K       ++ G ++    
Sbjct: 46  HGQIAVVEFLLQNG-ADPQLLGKGRESALSLACSKGYTDIVK-----MLLDCGVDVNEYD 99

Query: 70  NLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
             G T L  A   N +  VK LL+  +  D   +   G  +   A A G   + +
Sbjct: 100 WNGGTPLLYAVHGNHVKCVKMLLESGA--DPTIETDSGYNSMDLAVALGYRSVQQ 152

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 54.7 bits (133), Expect = 5e-09
 Identities = 24/115 (20%), Positives = 39/115 (33%), Gaps = 12/115 (10%)

Query: 14  NGIKEAPRVLLSNGGANL-SEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEI---T 69
            G        +      +   D      L  AA +G  AV +     + ++ G +     
Sbjct: 13  QGEMLYLATRIEQE-NVINHTDEEGFTPLMWAAAHGQIAVVE-----FLLQNGADPQLLG 66

Query: 70  NLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
               +AL +A      D VK LL      D+ + +  G T   YA     V+ V+
Sbjct: 67  KGRESALSLACSKGYTDIVKMLLD--CGVDVNEYDWNGGTPLLYAVHGNHVKCVK 119

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 50.1 bits (121), Expect = 2e-07
 Identities = 10/53 (18%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 72  GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
            + ++H  A    + ++   ++      +   ++ G T   +AAA G + +VE
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIE--QENVINHTDEEGFTPLMWAAAHGQIAVVE 53

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 40.8 bits (97), Expect = 2e-04
 Identities = 14/84 (16%), Positives = 28/84 (33%), Gaps = 10/84 (11%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEI---T 69
            G  +  ++LL  G  +++E D      L  A         K       +E G +    T
Sbjct: 79  KGYTDIVKMLLDCG-VDVNEYDWNGGTPLLYAVHGNHVKCVK-----MLLESGADPTIET 132

Query: 70  NLGNTALHVAAQANCIDFVKELLK 93
           + G  ++ +A         + +  
Sbjct: 133 DSGYNSMDLAVALGYRSVQQVIES 156

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 57.4 bits (140), Expect = 5e-10
 Identities = 28/115 (24%), Positives = 41/115 (35%), Gaps = 12/115 (10%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEI---T 69
            G  E  R LL  G A+       R   L  A+  G   +         +E   +I    
Sbjct: 46  FGEIETVRFLLEWG-ADPHILAKERESALSLASTGGYTDIVG-----LLLERDVDINIYD 99

Query: 70  NLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
             G T L  A + N +  V+ LL   +  DL  +   G T    A A G  ++ +
Sbjct: 100 WNGGTPLLYAVRGNHVKCVEALLARGA--DLTTEADSGYTPMDLAVALGYRKVQQ 152

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 57.4 bits (140), Expect = 5e-10
 Identities = 26/116 (22%), Positives = 41/116 (35%), Gaps = 13/116 (11%)

Query: 14  NGIKEAPRVLLSNGGANL--SEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEI--- 68
            G  +  +  L  G  NL    D      L  A+  G+    +     + +E G +    
Sbjct: 12  QGELDQLKEHLRKG-DNLVNKPDERGFTPLIWASAFGEIETVR-----FLLEWGADPHIL 65

Query: 69  TNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
                +AL +A+     D V  LL+     D+   +  G T   YA     V+ VE
Sbjct: 66  AKERESALSLASTGGYTDIVGLLLERDV--DINIYDWNGGTPLLYAVRGNHVKCVE 119

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 50.5 bits (122), Expect = 1e-07
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 72  GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
            + ++H  A    +D +KE L+      + K ++ G T   +A+A G +E V 
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLR-KGDNLVNKPDERGFTPLIWASAFGEIETVR 53

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 42.0 bits (100), Expect = 9e-05
 Identities = 12/100 (12%), Positives = 29/100 (29%), Gaps = 12/100 (12%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEI---T 69
            G  +   +LL     +++  D      L  A         +       +  G ++    
Sbjct: 79  GGYTDIVGLLLERD-VDINIYDWNGGTPLLYAVRGNHVKCVE-----ALLARGADLTTEA 132

Query: 70  NLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCT 109
           + G T + +A         + +   +    L + N +   
Sbjct: 133 DSGYTPMDLAVALGYRKVQQVIENHIL--KLFQSNLVPAD 170

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 55.7 bits (135), Expect = 5e-10
 Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 8/118 (6%)

Query: 44  AALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKK 103
            + +     +        V  G  + +     L  AA+A   D V+ L+   +  D+A K
Sbjct: 1   GSSHHHHHHSS-----GLVPRGSHMGSDLGKKLLEAARAGQDDEVRILMA--NGADVAAK 53

Query: 104 NKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLH 161
           +K G T    AA +G +E+V+ +++   D+    D  G      +       +  +L 
Sbjct: 54  DKNGSTPLHLAARNGHLEVVKLLLEAGADV-XAQDKFGKTAFDISIDNGNEDLAEILQ 110

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 56.3 bits (137), Expect = 6e-10
 Identities = 24/123 (19%), Positives = 40/123 (32%), Gaps = 18/123 (14%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEI---T 69
            G   +   LL NG ++ +  D      L+ A  +G   V +       ++    +    
Sbjct: 20  KGDIPSVEYLLQNG-SDPNVKDHAGWTPLHEACNHGHLKVVE-----LLLQHKALVNTTG 73

Query: 70  NLGNTALHVAAQANCIDFVKELLKMMSTE---DLAKKNKIGCTAFFYAAASGMVEIVEEM 126
              ++ LH AA+   +D VK LL              N  G     Y     M  ++   
Sbjct: 74  YQNDSPLHDAAKNGHVDIVKLLL-----SYGASRNAVNIFGLRPVDYTDDESMKSLLLLP 128

Query: 127 MKG 129
            K 
Sbjct: 129 EKN 131

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 52.0 bits (126), Expect = 2e-08
 Identities = 21/100 (21%), Positives = 39/100 (39%), Gaps = 10/100 (10%)

Query: 28  GANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEI---TNLGNTALHVAAQANC 84
           G +   +      L+ A++ GD    +     Y ++ G +     + G T LH A     
Sbjct: 1   GIDPFTNHRGETLLHIASIKGDIPSVE-----YLLQNGSDPNVKDHAGWTPLHEACNHGH 55

Query: 85  IDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
           +  V+ LL+      +        +    AA +G V+IV+
Sbjct: 56  LKVVELLLQ--HKALVNTTGYQNDSPLHDAAKNGHVDIVK 93

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 57.5 bits (140), Expect = 7e-10
 Identities = 14/87 (16%), Positives = 29/87 (33%), Gaps = 8/87 (9%)

Query: 38  RLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMST 97
            ++      +G               I  ++ +   T    AA+      + +LL+    
Sbjct: 15  AMEYLIEWKDGHSPSWV-----PSSYIAADVVSEYETPWWTAARKADEQALSQLLE---D 66

Query: 98  EDLAKKNKIGCTAFFYAAASGMVEIVE 124
            D+   ++ G TA  + A  G  + V 
Sbjct: 67  RDVDAVDENGRTALLFVAGLGSDKCVR 93

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 51.3 bits (124), Expect = 7e-08
 Identities = 23/119 (19%), Positives = 41/119 (34%), Gaps = 20/119 (16%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAK-------DIYDKYKVEIG 65
              ++A   LL     ++   D   R  L   A  G     +       D+  +      
Sbjct: 54  KADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRD----- 106

Query: 66  QEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
                 G TALH+AA     + V+ L+++ +  D+  +++ G TA   A          
Sbjct: 107 ---MRGGLTALHMAAGYVRPEVVEALVELGA--DIEVEDERGLTALELAREILKTTPKG 160

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 40.2 bits (95), Expect = 5e-04
 Identities = 5/60 (8%), Positives = 15/60 (25%), Gaps = 5/60 (8%)

Query: 70  NLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKG 129
             G     +  +                   A       T ++ AA     + + ++++ 
Sbjct: 12  GEGAMEYLIEWKDGHSPSWVPSS-----YIAADVVSEYETPWWTAARKADEQALSQLLED 66

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 55.9 bits (136), Expect = 7e-10
 Identities = 23/115 (20%), Positives = 41/115 (35%), Gaps = 12/115 (10%)

Query: 14  NGIKEAPRVLLSNGGANL-SEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEI---T 69
           NG  +  +  ++ G  ++       R  L+ AA  G   + +     + +  G +I    
Sbjct: 17  NGDLDEVKDYVAKG-EDVNRTLEGGRKPLHYAADCGQLEILE-----FLLLKGADINAPD 70

Query: 70  NLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
               T L  A     +  VK LL   +  D   K   G TAF       +  +++
Sbjct: 71  KHHITPLLSAVYEGHVSCVKLLLSKGA--DKTVKGPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 53.9 bits (131), Expect = 3e-09
 Identities = 21/87 (24%), Positives = 32/87 (36%), Gaps = 10/87 (11%)

Query: 41  LYRAALNGDWAVAKDIYDKYKVEIGQEI---TNLGNTALHVAAQANCIDFVKELLKMMST 97
              A  NGD    K       V  G+++      G   LH AA    ++ ++ LL   + 
Sbjct: 11  FMWALKNGDLDEVK-----DYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGA- 64

Query: 98  EDLAKKNKIGCTAFFYAAASGMVEIVE 124
            D+   +K   T    A   G V  V+
Sbjct: 65  -DINAPDKHHITPLLSAVYEGHVSCVK 90

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 50.1 bits (121), Expect = 6e-08
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 70  NLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
           ++ +     A +   +D VK+ +     ED+ +  + G     YAA  G +EI+E
Sbjct: 5   SMCDKEFMWALKNGDLDEVKDYVA--KGEDVNRTLEGGRKPLHYAADCGQLEILE 57

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.0 bits (147), Expect = 7e-10
 Identities = 74/544 (13%), Positives = 147/544 (27%), Gaps = 169/544 (31%)

Query: 9   GWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEI 68
            ++M+  IK   R                  ++Y    +  +     ++ KY V   Q  
Sbjct: 92  KFLMSP-IKTEQR------------QPSMMTRMYIEQRDRLYNDN-QVFAKYNVSRLQPY 137

Query: 69  TNL----------GNTALH---------VAAQANCIDFVKELLKMMSTE----DLAKKNK 105
             L           N  +          VA    C+ +  ++   M  +    +L   N 
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGSGKTWVALDV-CLSY--KVQCKMDFKIFWLNLKNCNS 194

Query: 106 IGCTAFFYAAASGMVEIVEEM-MKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQT 164
                        ++E+++++  + + +     D    + + R  +++     LL  K  
Sbjct: 195 ----------PETVLEMLQKLLYQIDPNWTSRSDHSSNIKL-RIHSIQAELRRLLKSKPY 243

Query: 165 KNSLT--DD------------DC-----------IELLVQLIETGFYVV----------A 189
           +N L    +             C            + L     T   +            
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303

Query: 190 LQLLR--------DRPRLATKRAENEETALHVLAR--KDLTSTNQN-------RRGTFFQ 232
             LL         D PR            L ++A   +D  +T  N       +  T  +
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTN---PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360

Query: 233 RCFN-LGAEKEENKQALE--------------LVESLWTEVVLSSESVSEI-SKLIARPT 276
              N L  E  E ++  +              L+  +W +  +    V  + +KL     
Sbjct: 361 SSLNVL--EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD--VIKSDVMVVVNKLHKY-- 414

Query: 277 RLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIFHVAVLNRLEELFKFIYDAKSIAD 336
            L+    K   +    I    Y +L  K +       H ++++       F  D     D
Sbjct: 415 SLVEKQPKESTISIPSI----YLELKVKLENEYA--LHRSIVDHYNIPKTFDSD-----D 463

Query: 337 LMVDSNDG--------------EGEMFD--PPLYMDIDNASSYMIVATLIVALVFGAAIT 380
           L+    D                 E       +++D        +   +        A  
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR-----FLEQKIRHD---STAWN 515

Query: 381 VPGGNKEDVGLPFLRHKTSFKVFAVSNVISLVASSVSIVNFLSILAPRYAEEDFLYLLSR 440
             G       L  L+    +K +   N         +I++FL  +        +  LL  
Sbjct: 516 ASGSI-----LNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI 570

Query: 441 KLLF 444
            L+ 
Sbjct: 571 ALMA 574

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 3e-05
 Identities = 62/459 (13%), Positives = 140/459 (30%), Gaps = 155/459 (33%)

Query: 76  LHVAAQANCIDF----VKELLK-MMSTED----LAKKNKIGCTAFFY-----AAASGMVE 121
           L V   A   +F    V+++ K ++S E+    +  K+ +  T   +          + +
Sbjct: 22  LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK 81

Query: 122 IVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTKNSLTDDDCI------- 174
            VEE+++ N    M P               Q  M+  ++ + ++ L +D+ +       
Sbjct: 82  FVEEVLRINYKFLMSP---------IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS 132

Query: 175 --ELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALH--------VLARKDLTSTNQ 224
             +  ++L +      AL  LR    +           +          +A     S   
Sbjct: 133 RLQPYLKLRQ------ALLELRPAKNVL----------IDGVLGSGKTWVALDVCLSYKV 176

Query: 225 NRRGTFFQRCF--NLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDA 282
             +     + F  NL          LE+++ L  ++  +  S S+ S  I      I   
Sbjct: 177 QCK--MDFKIFWLNLKNCNSPE-TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233

Query: 283 AKRGNVLF--------LLIL-------IREYADLMRKC-------------DENGYTIFH 314
            +R   L         LL+L            +L   C               +  T  H
Sbjct: 234 LRR---LLKSKPYENCLLVLLNVQNAKAWNAFNL--SCKILLTTRFKQVTDFLSAATTTH 288

Query: 315 VAVLNRL--------EELF-KFI--------YDAKS--------IADLMVDSNDGEGEMF 349
           +++ +          + L  K++         +  +        IA+ + D        +
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA----TW 344

Query: 350 DPPLYMDIDNASSYMIVATLIVALVFGAAITVPGGNKEDVGLPFLRHKTSFKVFAV--SN 407
           D   +++ D  ++           +  +++ V         L    ++  F   +V   +
Sbjct: 345 DNWKHVNCDKLTT-----------IIESSLNV---------LEPAEYRKMFDRLSVFPPS 384

Query: 408 VISLVASSVSIVNFLSIL---APRYAEEDFLYLLSRKLL 443
               + + +     LS++     +      +  L +  L
Sbjct: 385 A--HIPTIL-----LSLIWFDVIKSDVMVVVNKLHKYSL 416

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 59.0 bits (144), Expect = 9e-10
 Identities = 23/107 (21%), Positives = 42/107 (39%), Gaps = 3/107 (2%)

Query: 18  EAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALH 77
           ++   L       +     ++ +L  AA +G+      +     V          +T LH
Sbjct: 5   KSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNC-HASDGRKSTPLH 63

Query: 78  VAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
           +AA  N +  V+ LL+  +  D+  K+K G      A + G  E+ E
Sbjct: 64  LAAGYNRVRIVQLLLQHGA--DVHAKDKGGLVPLHNACSYGHYEVTE 108

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 55.2 bits (134), Expect = 2e-08
 Identities = 28/211 (13%), Positives = 61/211 (28%), Gaps = 31/211 (14%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEI---T 69
              ++   +L      N    D  +   L+ AA      + +       ++ G ++    
Sbjct: 35  GNEEKLMALLTPLN-VNCHASDGRKSTPLHLAAGYNRVRIVQ-----LLLQHGADVHAKD 88

Query: 70  NLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEE-MMK 128
             G   LH A      +  + LLK      +   +    T    AA+   VE+    +  
Sbjct: 89  KGGLVPLHNACSYGHYEVTELLLK--HGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSH 146

Query: 129 G-NKDIAMVPDMDGTLPIVRAAALEQGQMV-LLLHKQTKNSLTDDDCIELLVQLIETGFY 186
           G +  +    +  G   +  A   E  + +       +      +  +  + + +     
Sbjct: 147 GADPTLV---NCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEII 203

Query: 187 VVALQLLRDRPRLATKRAENEETALHVLARK 217
                           + ++ ETALH     
Sbjct: 204 NFK-------------QPQSHETALHCAVAS 221

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 47.1 bits (113), Expect = 7e-06
 Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 17/112 (15%)

Query: 17  KEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEI---TNLG 72
           K+   +LL  G AN++E +      L+ AA      V +        + G ++    +LG
Sbjct: 227 KQVAELLLRKG-ANVNEKNKDFMTPLHVAAERAHNDVME-----VLHKHGAKMNALDSLG 280

Query: 73  NTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
            TALH AA A  +   + LL   S  D +  +  G TA          E V+
Sbjct: 281 QTALHRAALAGHLQTCRLLLSYGS--DPSIISLQGFTAAQMGN-----EAVQ 325

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 44.4 bits (106), Expect = 5e-05
 Identities = 25/143 (17%), Positives = 40/143 (27%), Gaps = 44/143 (30%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAK-------DIYDKYKVEIG 65
            G  E   +LL +G A ++  D  +   L+ AA      V         D          
Sbjct: 101 YGHYEVTELLLKHG-ACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLV------ 153

Query: 66  QEITNLGNTALHVAAQANCIDF---------------------VKELLKMMSTEDLAKKN 104
                 G +A+ +A      +                      VK+ L         K+ 
Sbjct: 154 ---NCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLA--LEIINFKQP 208

Query: 105 KIGCTAFFYAAASG---MVEIVE 124
           +   TA   A AS      ++ E
Sbjct: 209 QSHETALHCAVASLHPKRKQVAE 231

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 58.9 bits (142), Expect = 9e-10
 Identities = 30/225 (13%), Positives = 66/225 (29%), Gaps = 21/225 (9%)

Query: 12  MTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNL 71
           +   I+E P  L ++     SE      +    + +       D +   ++ +   +   
Sbjct: 71  LFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEH 130

Query: 72  GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASG---MVEIVEEMMK 128
           GNT LH       ++ VK L+K  S  +    + +G +    A  S         E ++ 
Sbjct: 131 GNTPLHWLTSIANLELVKHLVKHGS--NRLYGDNMGESCLVKAVKSVNNYDSGTFEALLD 188

Query: 129 GNKDIAMVPDMDGTLP---IVRAAA-----------LEQGQMVLLLHKQTKNSLTDDDCI 174
                 ++ D         I+  +            L+     ++  +        ++  
Sbjct: 189 YLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKE 248

Query: 175 ELLVQLIETGFYVVALQLLRDRPRLAT--KRAENEETALHVLARK 217
                        +   L            +  N +T L++ AR 
Sbjct: 249 SKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARL 293

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 46.9 bits (111), Expect = 8e-06
 Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 6/96 (6%)

Query: 23  LLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEI---TNLGNTALHVA 79
           ++      +   +  +                +  D  K  I   +    + G+T L++A
Sbjct: 232 IVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD-LKWIIANMLNAQDSNGDTCLNIA 290

Query: 80  AQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAA 115
           A+   I  V  LL   +  D    NK G     + A
Sbjct: 291 ARLGNISIVDALLDYGA--DPFIANKSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 46.6 bits (110), Expect = 1e-05
 Identities = 32/261 (12%), Positives = 68/261 (26%), Gaps = 50/261 (19%)

Query: 67  EITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEM 126
                 N      +  + +  V +             ++ G T   +  +   +E+V+ +
Sbjct: 91  SEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHL 150

Query: 127 MKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTKNSLTDDDCIELLVQLIETGFY 186
           +K   +     D  G   +V+A              ++ N+        LL  L      
Sbjct: 151 VKHGSNRLYG-DNMGESCLVKAV-------------KSVNNYDSGTFEALLDYLYPCLI- 195

Query: 187 VVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKEENKQ 246
                 L D             T LH +                             +  
Sbjct: 196 ------LEDS---------MNRTILHHIIIT--------------------SGMTGCSAA 220

Query: 247 ALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCD 306
           A   ++ L   +V       +             +  ++ ++L  L L    A+++   D
Sbjct: 221 AKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQD 280

Query: 307 ENGYTIFHVAVLNRLEELFKF 327
            NG T  ++A       +   
Sbjct: 281 SNGDTCLNIAARLGNISIVDA 301

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 55.1 bits (134), Expect = 1e-09
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 10/87 (11%)

Query: 41  LYRAALNGDWAVAKDIYDKYKVEIGQEI---TNLGNTALHVAAQANCIDFVKELLKMMST 97
           L+ AA NG     K       +  G ++   +  GNT LH+AA+    + VK LL   + 
Sbjct: 13  LHNAAKNGHAEEVK-----KLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA- 66

Query: 98  EDLAKKNKIGCTAFFYAAASGMVEIVE 124
            D+  ++K G T    A  +G  EIV+
Sbjct: 67  -DVNARSKDGNTPEHLAKKNGHHEIVK 92

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 47.8 bits (115), Expect = 4e-07
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 69  TNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
           +  GNT LH AA+    + VK+LL      D+  ++K G T    AA +G  EIV+
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLS--KGADVNARSKDGNTPLHLAAKNGHAEIVK 59

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 46.2 bits (111), Expect = 1e-06
 Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 12/104 (11%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEI---T 69
           NG  E  + LLS G A+++         L+ AA NG   + K       +  G ++   +
Sbjct: 19  NGHAEEVKKLLSKG-ADVNARSKDGNTPLHLAAKNGHAEIVK-----LLLAKGADVNARS 72

Query: 70  NLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFY 113
             GNT  H+A +    + VK L    +  D+  ++        +
Sbjct: 73  KDGNTPEHLAKKNGHHEIVKLLDAKGA--DVNARSWGSSHHHHH 114

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 57.9 bits (141), Expect = 1e-09
 Identities = 27/124 (21%), Positives = 45/124 (36%), Gaps = 22/124 (17%)

Query: 13  TNGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAK-------DIYDKYKVEI 64
                E  R +  +  A L+  ++L++  L+ A +     +A+       D   +     
Sbjct: 21  KALTMEVIRQVKGDL-AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELR----- 74

Query: 65  GQEITNLGNTALHVAAQANCIDFVKELLK----MMSTEDLAKKNKIGCTAFFYAAASGMV 120
                  GNT LH+A +  C+  V  L +          L   N  G T    A+  G +
Sbjct: 75  ----DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYL 130

Query: 121 EIVE 124
            IVE
Sbjct: 131 GIVE 134

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 55.2 bits (134), Expect = 7e-09
 Identities = 18/103 (17%), Positives = 37/103 (35%), Gaps = 6/103 (5%)

Query: 41  LYRAALNGDWAVAKDIYDKYKVEIGQEI---TNLGNTALHVAAQANCIDFVKELLKMMST 97
           L+ A ++ + A+  ++  +        +    NL  T LH+A   N  +  + LL     
Sbjct: 12  LHLAIIHEEKALTMEVI-RQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGC- 69

Query: 98  EDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMD 140
            D   ++  G T    A   G +  V  + +      +   + 
Sbjct: 70  -DPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILK 111

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 54.5 bits (132), Expect = 2e-08
 Identities = 22/119 (18%), Positives = 40/119 (33%), Gaps = 13/119 (10%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAK-------DIYDKYKVEIG 65
               E    LL  G  +    D      L+ A   G  A            +    ++  
Sbjct: 55  TNQPEIAEALLGAG-CDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILK-- 111

Query: 66  QEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
                 G+T LH+A+    +  V+ L+ + +  + A++   G TA   A      ++V 
Sbjct: 112 -ATNYNGHTCLHLASIHGYLGIVELLVSLGADVN-AQEPCNGRTALHLAVDLQNPDLVS 168

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 51.8 bits (125), Expect = 1e-07
 Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 66  QEITNLGNTALHVAAQANCIDFVKELLKMMSTE--DLAKKNKIGCTAFFYAAASGMVEIV 123
           Q++T  G++ LH+A          E+++ +  +   L  +N +  T    A  +   EI 
Sbjct: 2   QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIA 61

Query: 124 E 124
           E
Sbjct: 62  E 62

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 46.8 bits (112), Expect = 4e-06
 Identities = 19/121 (15%), Positives = 34/121 (28%), Gaps = 21/121 (17%)

Query: 14  NGIKEAPRVLLSNGGA--NLSEDSLRRLKLYRAALNGDWAVAK-------DIYDKYKVEI 64
           +G      +L+S G A  N  E    R  L+ A    +  +         D+        
Sbjct: 127 HGYLGIVELLVSLG-ADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRV----- 180

Query: 65  GQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
               T  G +   +          ++L +   T +  +          Y   S   E  E
Sbjct: 181 ----TYQGYSPYQLTWGRPSTRIQQQLGQ--LTLENLQMLPESEDEESYDTESEFTEFTE 234

Query: 125 E 125
           +
Sbjct: 235 D 235

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 58.8 bits (143), Expect = 2e-09
 Identities = 20/120 (16%), Positives = 38/120 (31%), Gaps = 16/120 (13%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEI--TN 70
           NG         +N     +E +    +KL+  A  G +A+ +             I    
Sbjct: 71  NGNDFLGDFNHTNL-QIPTEPEPESPIKLHTEA-AGSYAITE-----PITRESVNIIDPR 123

Query: 71  LGNTALHVAAQANCIDFVKELLKMMSTEDLAK------KNKIGCTAFFYAAASGMVEIVE 124
              T LH  A  +  +  ++L+   + E +A        +    T    A  +    +V 
Sbjct: 124 HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVA 183

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 58.4 bits (142), Expect = 2e-09
 Identities = 29/124 (23%), Positives = 45/124 (36%), Gaps = 15/124 (12%)

Query: 14  NGIKEAPRVLLSNG--GANLSE-DSLRRLKLYRAALNG---DWAVAK-------DIYDKY 60
           N        +L++     ++ E D      L   A N      A AK        +    
Sbjct: 209 NRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDG 268

Query: 61  KVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMV 120
                      G TALH AAQ + +  VK L+    + +  K+++ G T    AA  G +
Sbjct: 269 AARK-DSEKYKGRTALHYAAQVSNMPIVKYLVGEKGS-NKDKQDEDGKTPIMLAAQEGRI 326

Query: 121 EIVE 124
           E+V 
Sbjct: 327 EVVM 330

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 57.3 bits (139), Expect = 4e-09
 Identities = 23/126 (18%), Positives = 41/126 (32%), Gaps = 20/126 (15%)

Query: 14  NGIKEAPRVLLSNG-------GANLSE-DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIG 65
           N   E    L+ +        GA+++  D      L  A L     +       Y ++ G
Sbjct: 135 NSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVA-----YLMKAG 189

Query: 66  QEI---TNLGNTALHVAAQANCIDFVKELL-KMMSTEDLAKKNKIGCTAFFYAAASG--- 118
            +         +ALH AA       +  +L       D+ + ++ G TA    A +    
Sbjct: 190 ADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRD 249

Query: 119 MVEIVE 124
            V   +
Sbjct: 250 QVASAK 255

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 24/131 (18%), Positives = 43/131 (32%), Gaps = 32/131 (24%)

Query: 14  NGIKEAPRV---LLSNGGANLSEDSLRRLK---------LYRAALNGDWAVAK------- 54
           N  ++       L+  G A +  D   R           L+ AA   +  + K       
Sbjct: 245 NEGRDQVASAKLLVEKG-AKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKG 303

Query: 55  -DIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFY 113
            +   +            G T + +AAQ   I+ V  L++  +   +   +    TA   
Sbjct: 304 SNKDKQ---------DEDGKTPIMLAAQEGRIEVVMYLIQQGA--SVEAVDATDHTARQL 352

Query: 114 AAASGMVEIVE 124
           A A+    IV+
Sbjct: 353 AQANNHHNIVD 363

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 11/100 (11%), Positives = 21/100 (21%), Gaps = 15/100 (15%)

Query: 25  SNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANC 84
            N   + S  S +   L  A+ +G     ++    Y                        
Sbjct: 26  KNRKNHQSITSSQH-SLLEASYDGYIKRQRNELQHY-----------SLYPNPQGYGNGN 73

Query: 85  IDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
                        +   +          +  A+G   I E
Sbjct: 74  DFLGDFNHTN--LQIPTEPEPESPIK-LHTEAAGSYAITE 110

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 44.9 bits (107), Expect = 4e-05
 Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 9/84 (10%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEI---T 69
                  + L+   G+N  + D   +  +  AA  G   V       Y ++ G  +    
Sbjct: 289 VSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVM-----YLIQQGASVEAVD 343

Query: 70  NLGNTALHVAAQANCIDFVKELLK 93
              +TA  +A   N  + V    +
Sbjct: 344 ATDHTARQLAQANNHHNIVDIFDR 367

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 57.5 bits (139), Expect = 2e-09
 Identities = 36/236 (15%), Positives = 71/236 (30%), Gaps = 49/236 (20%)

Query: 13  TNGIKEAPRVLLSNGGANLSEDSLRRLK-----LYRAALNG------------DWAVAKD 55
            +G++     LL++    L+++  R        L +A LN             D A    
Sbjct: 18  PDGLEGLLSFLLTHK-KRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTG 76

Query: 56  IYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLK------------MMSTEDLAKK 103
              ++     +++   G TALH+A +  C  +V+ L++                +D    
Sbjct: 77  NMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGY 136

Query: 104 NKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVL--LLH 161
              G      AA +    IV  + +     A +   D            +G  VL  L+ 
Sbjct: 137 FYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQD-----------SRGNTVLHALVA 185

Query: 162 KQTKNSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARK 217
                        ++   L+     +           L      +  + L + A+ 
Sbjct: 186 IADNTRENTKFVTKMYDLLLIKCAKLFPDT------NLEALLNNDGLSPLMMAAKT 235

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 46.7 bits (111), Expect = 6e-06
 Identities = 27/153 (17%), Positives = 49/153 (32%), Gaps = 34/153 (22%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLK--------------LYRAALNGDWAVAKDIYD 58
              K    +L+  G A++      R  +              L  AA      +   + +
Sbjct: 103 RRCKHYVELLVEKG-ADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE 161

Query: 59  K--YKVEIGQEITNLGNTALHVAAQA--NCIDFVKELLKMMS------------TEDLAK 102
               + ++ +   + GNT LH       N  +  K + KM              T   A 
Sbjct: 162 NGHKQADL-RRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEAL 220

Query: 103 KNKIGCTAFFYAAASGMVEIVEEMM-KGNKDIA 134
            N  G +    AA +G + I + ++ +   D A
Sbjct: 221 LNNDGLSPLMMAAKTGKIGIFQHIIRREIADAA 253

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 57.2 bits (139), Expect = 3e-09
 Identities = 20/119 (16%), Positives = 34/119 (28%), Gaps = 19/119 (15%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAK-------DIYDKYKVEIG 65
           N   E            L   +      L+ A ++ D  + +       D+         
Sbjct: 135 NPENEEEPRDEDWR-LQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEP---- 189

Query: 66  QEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
                 G T LH+A +A     ++ LLK  +  D   +   G T    A       +  
Sbjct: 190 ----TCGRTPLHLAVEAQAASVLELLLK--AGADPTARMYGGRTPLGSALLRPNPILAR 242

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 55.6 bits (135), Expect = 9e-09
 Identities = 16/124 (12%), Positives = 33/124 (26%), Gaps = 27/124 (21%)

Query: 14  NGIKEAPRVLLSNGGANLSEDSLRRLK--LYRAALNGDWAVAK-------DIYDKYKVEI 64
           +   E  R+L   G A+L++      +  L+ A      +V +       D   +     
Sbjct: 168 HKDAEMVRLLRDAG-ADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTAR----- 221

Query: 65  GQEITNLGNTALHVAAQANCIDFVKELLKMMSTE---DLAKKNKIGCTAFFYAAASGMVE 121
                  G T L  A         + L             +      +    + +    +
Sbjct: 222 ----MYGGRTPLGSALLRPNPILARLLR-----AHGAPEPEDGGDKLSPCSSSGSDSDSD 272

Query: 122 IVEE 125
             +E
Sbjct: 273 NRDE 276

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 55.6 bits (135), Expect = 1e-08
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 67  EITNLGNTALHVAAQANCIDFVKELLKM-MSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
            +T  G+TALH+A       F+  LL      E L  +N +G TA   AA  G    VE
Sbjct: 4   YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVE 62

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 52.5 bits (127), Expect = 1e-07
 Identities = 23/183 (12%), Positives = 47/183 (25%), Gaps = 33/183 (18%)

Query: 41  LYRAALNGDWAVAKDIY------DKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKM 94
           L+ A ++         +          ++      +LG TALH+AA       V++L   
Sbjct: 13  LHLAVIHQHEPFLD--FLLGFSAGHEYLD---LQNDLGQTALHLAAILGEASTVEKLYAA 67

Query: 95  MSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQG 154
            +   +    + G TA   A           +++           D  L   +    +  
Sbjct: 68  GA--GVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHP-RDASDTYLTQSQDCTPDTS 124

Query: 155 QMVLLLHKQTKNSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVL 214
                +  Q       ++         +    +                  +  T LHV 
Sbjct: 125 HAPAAVDSQPNPE---NEEEPR---DEDWRLQL-------------EAENYDGHTPLHVA 165

Query: 215 ARK 217
              
Sbjct: 166 VIH 168

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 41.0 bits (97), Expect = 5e-04
 Identities = 11/88 (12%), Positives = 22/88 (25%), Gaps = 18/88 (20%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAK-------DIYDKYKVEIG 65
                   +LL  G A+ +      R  L  A L  +  +A+          +       
Sbjct: 202 AQAASVLELLLKAG-ADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPED------ 254

Query: 66  QEITNLGNTALHVAAQANCIDFVKELLK 93
                   +    +   +  D   E  +
Sbjct: 255 ---GGDKLSPCSSSGSDSDSDNRDEGDE 279

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 56.7 bits (138), Expect = 4e-09
 Identities = 22/116 (18%), Positives = 41/116 (35%), Gaps = 16/116 (13%)

Query: 14  NGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEI---TN 70
           +G  +   +LL +G A++  +S     ++ AA  G             +  G  I    +
Sbjct: 135 SGSWDCVNLLLQHG-ASVQPESDLASPIHEAARRGHVECVN-----SLIAYGGNIDHKIS 188

Query: 71  LGNTALHVAAQANCIDFVKELLKMMSTEDLAK--KNKIGCTAFFYAAASGMVEIVE 124
              T L++A +      VK+LL     E  A   + K   +       +   E+  
Sbjct: 189 HLGTPLYLACENQQRACVKKLL-----ESGADVNQGKGQDSPLHAVVRTASEELAC 239

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 53.3 bits (129), Expect = 6e-08
 Identities = 12/112 (10%), Positives = 31/112 (27%), Gaps = 8/112 (7%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLG 72
           +        L+  G ++++  D  +                  I       +G  ++   
Sbjct: 5   HHHHHHSSGLVPRG-SHMASMDGKQGGMDGSKPAG--PRDFPGIRLLSNPLMGDAVS--D 59

Query: 73  NTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
            + +H AA       ++ L+       +        +    A   G +  V+
Sbjct: 60  WSPMHEAAIHGHQLSLRNLISQGW--AVNIITADHVSPLHEACLGGHLSCVK 109

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 51.7 bits (125), Expect = 2e-07
 Identities = 25/121 (20%), Positives = 39/121 (32%), Gaps = 25/121 (20%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAK-------DIYDKYKVEIG 65
           +G + + R L+S G   ++   +     L+ A L G  +  K        +         
Sbjct: 69  HGHQLSLRNLISQG-WAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGV------ 121

Query: 66  QEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKI--GCTAFFYAAASGMVEIV 123
              T   +T L  A  +   D V  LL     +  A         +    AA  G VE V
Sbjct: 122 ---TADWHTPLFNACVSGSWDCVNLLL-----QHGASVQPESDLASPIHEAARRGHVECV 173

Query: 124 E 124
            
Sbjct: 174 N 174

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 51.0 bits (123), Expect = 3e-07
 Identities = 21/113 (18%), Positives = 35/113 (30%), Gaps = 11/113 (9%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEI--TN 70
            G  E    L++ G  N+    S     LY A  N   A  K       +E G ++    
Sbjct: 167 RGHVECVNSLIAYG-GNIDHKISHLGTPLYLACENQQRACVK-----KLLESGADVNQGK 220

Query: 71  LGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIV 123
             ++ LH   +    +    L+   +  D   KN  G            +  +
Sbjct: 221 GQDSPLHAVVRTASEELACLLMDFGA--DTQAKNAEGKRPVELVPPESPLAQL 271

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 56.1 bits (136), Expect = 4e-09
 Identities = 33/213 (15%), Positives = 68/213 (31%), Gaps = 36/213 (16%)

Query: 14  NGIKEAPRVLLSNGGANL-SEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLG 72
              ++A   LL     ++ + D   R  L   A  G     + + +    ++       G
Sbjct: 55  KADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEA-GADLDHRDMRGG 111

Query: 73  NTALHVAAQANCIDFVKELLKMMSTE---DLAKKNKIGCTAFFYAAASGMVEIVEEMMKG 129
            TALH+AA     + V+ L+     E   D+  +++ G TA   A            M+ 
Sbjct: 112 LTALHMAAGYVRPEVVEALV-----ELGADIEVEDERGLTALELAREILKTTPKGNPMQF 166

Query: 130 NKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTKNS-----LTDDDCIELLVQLIETG 184
            + I     ++  + ++     E  ++  ++ K+ K       +   D  +         
Sbjct: 167 GRRI----GLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHV 222

Query: 185 FYVVALQLLRDRPRLATKRAENEETALHVLARK 217
                          A   A++ E  L     +
Sbjct: 223 ---------------AEDVAKDYEDGLEYAVAE 240

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 55.7 bits (135), Expect = 7e-09
 Identities = 14/87 (16%), Positives = 29/87 (33%), Gaps = 8/87 (9%)

Query: 38  RLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMST 97
            ++      +G               I  ++ +   T    AA+      + +LL+    
Sbjct: 16  AMEYLIEWKDGHSPSWV-----PSSYIAADVVSEYETPWWTAARKADEQALSQLLE---D 67

Query: 98  EDLAKKNKIGCTAFFYAAASGMVEIVE 124
            D+   ++ G TA  + A  G  + V 
Sbjct: 68  RDVDAVDENGRTALLFVAGLGSDKCVR 94

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 55.5 bits (135), Expect = 4e-09
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 10/87 (11%)

Query: 41  LYRAALNGDWAVAKDIYDKYKVEIGQEI---TNLGNTALHVAAQANCIDFVKELLKMMST 97
           L  A       V +        +   ++      GNT L++A   N I+  K L+   + 
Sbjct: 10  LEAANQRDTKKVKE-----ILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGA- 63

Query: 98  EDLAKKNKIGCTAFFYAAASGMVEIVE 124
            D+  +N I  + + YA A G  EI+ 
Sbjct: 64  -DINLQNSISDSPYLYAGAQGRTEILA 89

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 54.0 bits (131), Expect = 1e-08
 Identities = 28/117 (23%), Positives = 46/117 (39%), Gaps = 9/117 (7%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLG 72
           N   E  + L+  G A+++  +S+       A   G   +   +      ++  +    G
Sbjct: 49  NNDIEIAKALIDRG-ADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDL-NKHNRYG 106

Query: 73  NTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAAS-----GMVEIVE 124
             AL  AA+   ID VK LL+    ED+  +N  G TA   A           +IV+
Sbjct: 107 GNALIPAAEKGHIDNVKLLLE-DGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK 162

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 53.6 bits (130), Expect = 2e-08
 Identities = 29/117 (24%), Positives = 46/117 (39%), Gaps = 9/117 (7%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLG 72
            G  E    +L +   +L++ +      L  AA  G     K + +  + +I     + G
Sbjct: 82  QGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDI-DFQNDFG 140

Query: 73  NTALHVAA-----QANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
            TAL  A           D VK L++  +  D + K+  G TA  YA   G  EI +
Sbjct: 141 YTALIEAVGLREGNQLYQDIVKLLMENGA--DQSIKDNSGRTAMDYANQKGYTEISK 195

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 44.7 bits (107), Expect = 2e-05
 Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 2/56 (3%)

Query: 69  TNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
           T      L  A Q +     + L    +T  + + +  G T    A  +  +EI +
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQD--TTYQVDEVDTEGNTPLNIAVHNNDIEIAK 56

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 56.7 bits (138), Expect = 4e-09
 Identities = 29/136 (21%), Positives = 50/136 (36%), Gaps = 12/136 (8%)

Query: 3   NILSGLGWVMTNGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAKDIYDKYK 61
           +I +         +++A + L S    N           L+ AA  G   V K       
Sbjct: 165 DIEAARKEEERIMLRDARQWLNSGH-INDVRHAKSGGTALHVAAAKGYTEVLK-----LL 218

Query: 62  VEIGQEI---TNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASG 118
           ++   ++      G T LH AA     +  + L++ +   D+   NK+G TAF  A    
Sbjct: 219 IQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLC--DMEAVNKVGQTAFDVADEDI 276

Query: 119 MVEIVEEMMKGNKDIA 134
           +  + E   K N   +
Sbjct: 277 LGYLEELQKKQNLLHS 292

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 55.2 bits (134), Expect = 2e-08
 Identities = 38/214 (17%), Positives = 71/214 (33%), Gaps = 32/214 (14%)

Query: 14  NGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEI---TN 70
            G +      +                   A  +GD            +E G +I     
Sbjct: 18  IGSETDLEPPVVKR-KKTKVKFDDGAVFLAACSSGDTEEVL-----RLLERGADINYANV 71

Query: 71  LGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGN 130
            G TALH A   + +D VK L++  +  ++ + +  G      AA+ G ++I E ++   
Sbjct: 72  DGLTALHQACIDDNVDMVKFLVENGA--NINQPDNEGWIPLHAAASCGYLDIAEYLISQG 129

Query: 131 KDIAMVPDMDGTLPIVRAAALEQGQMV-LLLHKQTKNSLTDD------DCIELLVQLIET 183
             +  V + +G  P+  A      +++   +++Q  +              +    L   
Sbjct: 130 AHVGAV-NSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSG 188

Query: 184 GFYVVALQLLRDRPRLATKRAENEETALHVLARK 217
               V               A++  TALHV A K
Sbjct: 189 HINDVR-------------HAKSGGTALHVAAAK 209

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 54.0 bits (131), Expect = 3e-08
 Identities = 26/155 (16%), Positives = 47/155 (30%), Gaps = 15/155 (9%)

Query: 14  NGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGN 73
             ++E  +  ++  G ++                      +   +   +         G 
Sbjct: 149 EAMEELLQNEVNRQGVDIEA------ARKEEERIMLRDARQ-WLNSGHIND-VRHAKSGG 200

Query: 74  TALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEE-MMKG-NK 131
           TALHVAA     + +K L++     D+  K+  G T    AA  G  E     +    + 
Sbjct: 201 TALHVAAAKGYTEVLKLLIQARY--DVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDM 258

Query: 132 DIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTKN 166
           +     +  G      A     G +  L  KQ   
Sbjct: 259 EAV---NKVGQTAFDVADEDILGYLEELQKKQNLL 290

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 52.9 bits (128), Expect = 9e-08
 Identities = 27/140 (19%), Positives = 57/140 (40%), Gaps = 35/140 (25%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEI---T 69
           +   +  + L+ NG AN+++ D+   + L+ AA  G   +A+     Y +  G  +    
Sbjct: 83  DDNVDMVKFLVENG-ANINQPDNEGWIPLHAAASCGYLDIAE-----YLISQGAHVGAVN 136

Query: 70  NLGNTALHVAAQANCIDFVKELL---------------KMMSTE----------DLAKKN 104
           + G+T L +A +    + ++  +               ++M  +          +  +  
Sbjct: 137 SEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHA 196

Query: 105 KIGCTAFFYAAASGMVEIVE 124
           K G TA   AAA G  E+++
Sbjct: 197 KSGGTALHVAAAKGYTEVLK 216

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 40.2 bits (95), Expect = 9e-04
 Identities = 37/263 (14%), Positives = 78/263 (29%), Gaps = 76/263 (28%)

Query: 72  GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMM-KG- 129
                 +         ++  +     +    K   G   F  A +SG  E V  ++ +G 
Sbjct: 8   QKRNEQLKRWIGSETDLEPPVV--KRKKTKVKFDDGAV-FLAACSSGDTEEVLRLLERGA 64

Query: 130 NKDIAMVPDMDGTLPIVRAAALEQGQMVLLL-------HKQTKNSLT------DDDCIEL 176
           + + A   ++DG   + +A   +   MV  L       ++                 +++
Sbjct: 65  DINYA---NVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDI 121

Query: 177 LVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFN 236
              LI  G    A     +            +T L +                       
Sbjct: 122 AEYLISQG----AHVGAVN---------SEGDTPLDI----------------------- 145

Query: 237 LGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIR 296
             AE+E  +   EL+++      ++ + V   +        ++ DA +         L  
Sbjct: 146 --AEEEAME---ELLQNE-----VNRQGVDIEAARKEEERIMLRDARQ--------WLNS 187

Query: 297 EYADLMRKCDENGYTIFHVAVLN 319
            + + +R   ++G T  HVA   
Sbjct: 188 GHINDVRH-AKSGGTALHVAAAK 209

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 55.9 bits (136), Expect = 5e-09
 Identities = 23/123 (18%), Positives = 47/123 (38%), Gaps = 27/123 (21%)

Query: 14  NGIKEAPRVLLSNGGANLSEDSLRRLK-----LYRAALNGDWAVAK-------DIYDKYK 61
              +E  ++LL  G A++       +K     L  A  N   ++ +       ++     
Sbjct: 126 TECQETVQLLLERG-ADIDA---VDIKSGRSPLIHAVENNSLSMVQLLLQHGANV----- 176

Query: 62  VEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVE 121
                     G++ALH A+    +  V+ L++  S  D + KN    T    A +  +++
Sbjct: 177 ----NAQMYSGSSALHSASGRGLLPLVRTLVR--SGADSSLKNCHNDTPLMVARSRRVID 230

Query: 122 IVE 124
           I+ 
Sbjct: 231 ILR 233

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 54.8 bits (133), Expect = 1e-08
 Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 2/60 (3%)

Query: 67  EITNLGNTALHVAAQANCIDFVKELLKMMSTE--DLAKKNKIGCTAFFYAAASGMVEIVE 124
                G+T LH+A     +  V  L+ +      +L   N +  T    A  + +  +V 
Sbjct: 4   RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVR 63

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 53.6 bits (130), Expect = 3e-08
 Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 6/87 (6%)

Query: 41  LYRAALNGDWAVAKDIYDKYKVEIGQEI---TNLGNTALHVAAQANCIDFVKELLKMMST 97
           L+ A + G+      + +    + G+E+    NL  T LH+A        V+ L+   + 
Sbjct: 13  LHIAVVQGNLPAVHRLVN-LFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGA- 70

Query: 98  EDLAKKNKIGCTAFFYAAASGMVEIVE 124
                 ++ G TA   A        + 
Sbjct: 71  -SPMALDRHGQTAAHLACEHRSPTCLR 96

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 52.1 bits (126), Expect = 9e-08
 Identities = 24/123 (19%), Positives = 45/123 (36%), Gaps = 23/123 (18%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAK-----------DIYDKYK 61
             +    R+L++ G A+    D   +   + A  +      +           D+  +  
Sbjct: 56  TTLPSVVRLLVTAG-ASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEAR-- 112

Query: 62  VEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVE 121
                     G TALHVA    C + V+ LL+  +  D A   K G +   +A  +  + 
Sbjct: 113 -------NYDGLTALHVAVNTECQETVQLLLERGADID-AVDIKSGRSPLIHAVENNSLS 164

Query: 122 IVE 124
           +V+
Sbjct: 165 MVQ 167

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 42.8 bits (102), Expect = 9e-05
 Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 10/83 (12%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEI---T 69
           N      ++LL +G AN++         L+ A+  G   + +       V  G +     
Sbjct: 160 NNSLSMVQLLLQHG-ANVNAQMYSGSSALHSASGRGLLPLVR-----TLVRSGADSSLKN 213

Query: 70  NLGNTALHVAAQANCIDFVKELL 92
              +T L VA     ID ++   
Sbjct: 214 CHNDTPLMVARSRRVIDILRGKA 236

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 55.7 bits (135), Expect = 6e-09
 Identities = 24/154 (15%), Positives = 46/154 (29%), Gaps = 29/154 (18%)

Query: 14  NGIKEAPRVLLSNGGANL------SEDSLRRLKLYRAALNGDWAVAK-------DI---- 56
               EA  VL+      L      SE    +  L+ A +N +  + +        +    
Sbjct: 47  YDNLEAAMVLMEAA-PELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARA 105

Query: 57  YDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAA 116
                      +   G   L  AA     + V+ L++  +  D+  ++ +G T       
Sbjct: 106 TGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGA--DIRAQDSLGNTVLHILIL 163

Query: 117 SGMVEIVEEMMK---------GNKDIAMVPDMDG 141
                   +M             K + +VP+  G
Sbjct: 164 QPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQG 197

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 54.9 bits (133), Expect = 9e-09
 Identities = 24/130 (18%), Positives = 43/130 (33%), Gaps = 24/130 (18%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAK-------DIYDKYKVEIG 65
           N ++   ++L   G   + +  ++    L+ AAL  +   A        ++  +      
Sbjct: 14  NDVQALSKLLKFEG-CEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPM---- 68

Query: 66  QEITNLGNTALHVAAQANCIDFVKELL-----------KMMSTEDLAKKNKIGCTAFFYA 114
                 G TALH+A     ++ V+ LL             +           G     +A
Sbjct: 69  TSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFA 128

Query: 115 AASGMVEIVE 124
           A  G  EIV 
Sbjct: 129 ACVGSEEIVR 138

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 51.8 bits (125), Expect = 9e-08
 Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 71  LGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
           +  + L +AA+ N +  + +LLK     ++ ++  +G TA   AA    +E   
Sbjct: 2   IWESPLLLAAKENDVQALSKLLKFEGC-EVHQRGAMGETALHIAALYDNLEAAM 54

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 51.8 bits (125), Expect = 1e-07
 Identities = 27/140 (19%), Positives = 44/140 (31%), Gaps = 39/140 (27%)

Query: 14  NGIKEAPRVLLSNGGANLSE---DSLRRLK-----------LYRAALNGDWAVAK----- 54
           N      R LL+ G A++S     S+   +           L  AA  G   + +     
Sbjct: 85  NQNVNLVRALLARG-ASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEH 143

Query: 55  --DIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMM--------STEDLAKKN 104
             DI  +          +LGNT LH+        F  ++  ++                N
Sbjct: 144 GADIRAQ---------DSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPN 194

Query: 105 KIGCTAFFYAAASGMVEIVE 124
             G T F  A   G + + +
Sbjct: 195 NQGLTPFKLAGVEGNIVMFQ 214

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 10/88 (11%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAKDIY--------DKYKVEI 64
            G +E  R+L+ +G A++   DSL    L+   L  +   A  +Y          +   +
Sbjct: 131 VGSEEIVRLLIEHG-ADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSL 189

Query: 65  GQEITNLGNTALHVAAQANCIDFVKELL 92
                N G T   +A     I   + L+
Sbjct: 190 ELVPNNQGLTPFKLAGVEGNIVMFQHLM 217

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 53.6 bits (130), Expect = 3e-08
 Identities = 22/120 (18%), Positives = 37/120 (30%), Gaps = 20/120 (16%)

Query: 14  NGIKEAPRVLLSNGGANL-SEDSLRRLKLYRAALNGDWA-VAK-------DIYDKYKVEI 64
            G       L++ G  ++   D      L  AA         +        +    K   
Sbjct: 119 FGHTSIVAYLIAKG-QDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYH- 176

Query: 65  GQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
                   NTALH A  A     +  LL+  +  ++  +N  G +A   A     V ++ 
Sbjct: 177 -------KNTALHWAVLAGNTTVISLLLEAGA--NVDAQNIKGESALDLAKQRKNVWMIN 227

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 52.4 bits (127), Expect = 8e-08
 Identities = 20/87 (22%), Positives = 32/87 (36%), Gaps = 9/87 (10%)

Query: 41  LYRAALNGDWAVAKDIYDKYKVEIGQEI---TNLGNTALHVAAQANCIDFVKELLKMMST 97
           + +A   G +   +       VE G ++        T LH AA  N ID VK  +   + 
Sbjct: 13  IVKATQYGIYERCR-----ELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAI 67

Query: 98  EDLAKKNKIGCTAFFYAAASGMVEIVE 124
            D      +  T   +A   G + +V 
Sbjct: 68  VD-QLGGDLNSTPLHWATRQGHLSMVV 93

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 50.9 bits (123), Expect = 3e-07
 Identities = 12/61 (19%), Positives = 26/61 (42%), Gaps = 8/61 (13%)

Query: 67  EITNLGNTALHVAAQANCIDFVKELLKMMSTE---DLAKKNKIGCTAFFYAAASGMVEIV 123
            I +     +  A Q    +  +EL+     E   D+ + +K   T   +AA +  +++V
Sbjct: 4   HIDDYSTWDIVKATQYGIYERCRELV-----EAGYDVRQPDKENVTLLHWAAINNRIDLV 58

Query: 124 E 124
           +
Sbjct: 59  K 59

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 49.7 bits (120), Expect = 6e-07
 Identities = 22/117 (18%), Positives = 41/117 (35%), Gaps = 14/117 (11%)

Query: 14  NGIKEAPRVLLSNGGANLSEDSLRRLK--LYRAALNGDWAVAKDIYDKYKVEIG---QEI 68
           N   +  +  +S G A + +         L+ A   G  ++         ++ G     I
Sbjct: 52  NNRIDLVKYYISKG-AIVDQLGGDLNSTPLHWATRQGHLSMVV-----QLMKYGADPSLI 105

Query: 69  TNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASG-MVEIVE 124
              G + +H+AAQ      V  L+      D+   ++ G T   +AA     V+   
Sbjct: 106 DGEGCSCIHLAAQFGHTSIVAYLIAKGQ--DVDMMDQNGMTPLMWAAYRTHSVDPTR 160

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 52.5 bits (127), Expect = 8e-08
 Identities = 28/124 (22%), Positives = 42/124 (33%), Gaps = 31/124 (25%)

Query: 14  NGIKEAPRVLLSNGGANLSEDSLRRLK-----LYRAALNGDWAVAK-------DIYDKYK 61
           +        LL+ G A  +             L++AA   D  + K       D      
Sbjct: 41  DNNVRLVCTLLNAG-ALKNL------LENEFPLHQAATLEDTKIVKILLFSGLDDSQF-- 91

Query: 62  VEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIG-CTAFFYAAASGMV 120
                   + GNTAL+ A  +  +  VK  +K      L    K G  T+F++A     V
Sbjct: 92  -------DDKGNTALYYAVDSGNMQTVKLFVKKNW--RLMFYGKTGWKTSFYHAVMLNDV 142

Query: 121 EIVE 124
            IV 
Sbjct: 143 SIVS 146

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 50.6 bits (122), Expect = 4e-07
 Identities = 15/116 (12%), Positives = 38/116 (32%), Gaps = 13/116 (11%)

Query: 14  NGIKEAPRVLLSNGGANLSEDSLRRLK--LYRAALNGDWAVAKDIYDKYKVEIG--QEIT 69
           +G  +  ++ +      L        K   Y A +  D ++       Y +         
Sbjct: 105 SGNMQTVKLFVKKN-WRLMFYGKTGWKTSFYHAVMLNDVSIVS-----YFLSEIPSTFDL 158

Query: 70  NLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCT-AFFYAAASGMVEIVE 124
            +  + +H+  +   +D +  LL  M+       N +        A  +  +E+++
Sbjct: 159 AILLSCIHITIKNGHVDMMILLLDYMT--STNTNNSLLFIPDIKLAIDNKDIEMLQ 212

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 6/57 (10%)

Query: 69  TNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKI-GCTAFFYAAASGMVEIVE 124
              G++A + A   N +  V  LL        A KN +        AA     +IV+
Sbjct: 28  DVHGHSASYYAIADNNVRLVCTLLNA-----GALKNLLENEFPLHQAATLEDTKIVK 79

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 51.7 bits (124), Expect = 2e-07
 Identities = 23/124 (18%), Positives = 36/124 (29%), Gaps = 24/124 (19%)

Query: 14  NGIKEAPRVLLSNG--GANLSE-DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITN 70
               +    LL N    A+L   DSL    L+   +  D                    +
Sbjct: 146 TKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIAD-------------------NS 186

Query: 71  LGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGN 130
             N+AL +      +     L   +        N  G T    AA  G +EI   +++  
Sbjct: 187 PENSALVIHMYDGLLQMGARLCPTVQ--LEEISNHQGLTPLKLAAKEGKIEIFRHILQRE 244

Query: 131 KDIA 134
              A
Sbjct: 245 FSGA 248

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 27/190 (14%), Positives = 52/190 (27%), Gaps = 41/190 (21%)

Query: 13  TNGIKEAPRVLLSNG----------GANL-SEDSLRRLKLYRAALNGDWAVAK------- 54
            +G+      LL              A    E       L+ A         K       
Sbjct: 55  QDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGA 114

Query: 55  DI----YDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTE-DLAKKNKIGCT 109
           D+      ++  +        G   L +AA     D V  LL+       L   + +G T
Sbjct: 115 DVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNT 174

Query: 110 ----------------AFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQ 153
                           A       G++++   +    +    + +  G  P+  AA   +
Sbjct: 175 VLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEE-ISNHQGLTPLKLAAKEGK 233

Query: 154 GQMV-LLLHK 162
            ++   +L +
Sbjct: 234 IEIFRHILQR 243

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 26/153 (16%), Positives = 46/153 (30%), Gaps = 30/153 (19%)

Query: 38  RLKLYRAALNGDWAVAKDIYD------KYKVEIGQEITNLGNTALHVAA---QANCIDFV 88
           R +L+     G       + +      KY  +      + G T L  A    Q      +
Sbjct: 3   RDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACI 62

Query: 89  KELL---------KMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDI------ 133
             LL         K +       +   G +A   A     ++ V+ +++   D+      
Sbjct: 63  MPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACG 122

Query: 134 ------AMVPDMDGTLPIVRAAALEQGQMVLLL 160
                        G LP+  AA  +Q  +V  L
Sbjct: 123 RFFQKHQGTCFYFGELPLSLAACTKQWDVVTYL 155

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 50.9 bits (122), Expect = 3e-07
 Identities = 33/239 (13%), Positives = 60/239 (25%), Gaps = 67/239 (28%)

Query: 13  TNGIKEAPRVLLSNGGANLSEDSLRRLK-----------LYRAALNGDWAV--------- 52
            NG  +   +LL       S                   L+ A    +  +         
Sbjct: 66  HNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGA 125

Query: 53  ---AKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTE-DLAKKNKIGC 108
              A    D +K   G+     G   L +AA  N +  VK LL+      D++ ++ +G 
Sbjct: 126 DVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGN 185

Query: 109 TAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTKNSL 168
           T            +             V  M   + I+ A      ++  +     +  L
Sbjct: 186 TVLHALVEVADNTVDN--------TKFVTSMYNEILILGAKLHPTLKLEEI---TNRKGL 234

Query: 169 T---------DDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKD 218
           T             +  ++Q                      +   +E    H  A   
Sbjct: 235 TPLALAASSGKIGVLAYILQ----------------------REI-HEPECRHAAAHHH 270

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 47.5 bits (113), Expect = 4e-06
 Identities = 16/118 (13%), Positives = 28/118 (23%), Gaps = 18/118 (15%)

Query: 25  SNGGANLSEDSLRRLKLYRAALNGDWAVAKDI--YDKYKVEIGQEI----TNLGNTALHV 78
           S            R  ++ A    +    + +  + +   +   +        G T L  
Sbjct: 1   SVSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLK 60

Query: 79  A---AQANCIDFVKELL---------KMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
           A         D +  LL         K             G TA   A     + +V 
Sbjct: 61  AMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVT 118

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 47.8 bits (115), Expect = 6e-07
 Identities = 24/116 (20%), Positives = 38/116 (32%), Gaps = 14/116 (12%)

Query: 14  NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEI---T 69
            G  E  R LL  G A+ +  +   R  +      G   VA+       +  G E     
Sbjct: 22  RGQVETVRQLLEAG-ADPNALNRFGRRPIQVMM-MGSAQVAE-----LLLLHGAEPNCAD 74

Query: 70  NLGNT-ALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
               T  +H AA+   +D +  L +  +   L   +  G      A   G  +I  
Sbjct: 75  PATLTRPVHDAAREGFLDTLVVLHRAGA--RLDVCDAWGRLPVDLAEEQGHRDIAR 128

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 45.1 bits (108), Expect = 5e-06
 Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 9/81 (11%)

Query: 72  GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMM-KG- 129
            +  L  AA    ++ V++LL+  +  D    N+ G          G  ++ E ++  G 
Sbjct: 12  SDAGLATAAARGQVETVRQLLEAGA--DPNALNRFGRRP-IQVMMMGSAQVAELLLLHGA 68

Query: 130 NKDIAMVPDMDG-TLPIVRAA 149
             + A   D    T P+  AA
Sbjct: 69  EPNCA---DPATLTRPVHDAA 86

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 46.9 bits (111), Expect = 7e-06
 Identities = 21/105 (20%), Positives = 41/105 (39%), Gaps = 2/105 (1%)

Query: 72  GNTALHVAAQ-ANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGN 130
             TALH+A +  +          + ++ +L K+   G TA  Y   +   E ++ +++G 
Sbjct: 169 DETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGK 228

Query: 131 KDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTKNSLTDDDCIE 175
             I  + +  G  P+  A  L+      LL +           +E
Sbjct: 229 ASIE-IANESGETPLDIAKRLKHEHCEELLTQALSGRFNSHVHVE 272

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 41.5 bits (97), Expect = 3e-04
 Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 3/86 (3%)

Query: 39  LKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTE 98
           L L   +++       D   +    + ++ T  G+TALH     +  + +K LL+     
Sbjct: 173 LHLAVRSVDRTSLHIVDFLVQNSGNLDKQ-TGKGSTALHYCCLTDNAECLKLLLR--GKA 229

Query: 99  DLAKKNKIGCTAFFYAAASGMVEIVE 124
            +   N+ G T    A         E
Sbjct: 230 SIEIANESGETPLDIAKRLKHEHCEE 255

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 43.6 bits (104), Expect = 3e-05
 Identities = 10/56 (17%), Positives = 17/56 (30%), Gaps = 3/56 (5%)

Query: 69  TNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
                  L  AA    ++ V+ LL+  +  +    N  G          G   + E
Sbjct: 9   MEPSADWLATAAARGRVEEVRALLE--AGANPNAPNSYGRRP-IQVMMMGSARVAE 61

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 42.8 bits (102), Expect = 4e-05
 Identities = 21/120 (17%), Positives = 35/120 (29%), Gaps = 18/120 (15%)

Query: 10  WVMTNGIKEAPRVLLSNGGA--NLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQE 67
            VM  G      +LL +G A  N ++ +     ++ AA  G                G  
Sbjct: 50  QVMMMGSARVAELLLLHG-AEPNCADPATLTRPVHDAAREGFLDTLV-----VLHRAGAR 103

Query: 68  I---TNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
           +      G   + +A +    D  + L               G       AA G  +I +
Sbjct: 104 LDVRDAWGRLPVDLAEELGHRDVARYLRAAA-----GGTR--GSNHARIDAAEGPSDIPD 156

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 21/136 (15%), Positives = 41/136 (30%), Gaps = 11/136 (8%)

Query: 8   LGWVMTNGIKEAPRVLLSNGGANL-SEDSLRRLKLYRAALNGDWAVAKDI-YDKYKVEIG 65
           L         +    L++ G A++ S         +     G   +       K  +E G
Sbjct: 46  LRNNNDEARYKISMFLINKG-ADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKG 104

Query: 66  QEI---TNLGNTALHVAAQANCIDFVK--ELLKMMSTE---DLAKKNKIGCTAFFYAAAS 117
            +I          +        +D  +   L K++ ++    L  K+K G TA  +    
Sbjct: 105 ADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRC 164

Query: 118 GMVEIVEEMMKGNKDI 133
                ++ M    K  
Sbjct: 165 QKPIALKMMEDYIKKY 180

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 39.7 bits (93), Expect = 8e-04
 Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 13/92 (14%)

Query: 41  LYRAALNGDWAVAKDIYDK---YKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMST 97
           +  AA+ G +    ++++K    K  + +  +N+    L              L+     
Sbjct: 10  VSAAAMLGTYEDFLELFEKGYEDKESVLK--SNILYDVLRNNNDEARYKISMFLI----- 62

Query: 98  E---DLAKKNKIGCTAFFYAAASGMVEIVEEM 126
               D+  + K G T FF     G  +I    
Sbjct: 63  NKGADIKSRTKEGTTLFFPLFQGGGNDITGTT 94

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 41.1 bits (96), Expect = 4e-04
 Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 72  GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
           GNTALH AA  N  D +K LLK      +   N+ G TA   A      E  E
Sbjct: 226 GNTALHYAALYNQPDCLKLLLK--GRALVGTVNEAGETALDIARKKHHKECEE 276

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	507
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	99.98
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.95
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.95
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.95
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.95
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.94
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.94
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.93
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.93
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.92
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.92
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.92
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.91
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.91
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.91
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.91
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.91
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.91
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.9
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.9
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.89
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.89
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.88
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.88
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.88
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.88
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.87
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.87
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.86
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.83
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.83
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.83
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.83
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.83
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.82
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.82
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.8
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.79
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.78
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.73
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.69
3gvo_A	351	Pumilio 2, pumilio homolog 2; RNA-binding, PUF dom	84.23

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.8e-51  Score=417.74  Aligned_cols=326  Identities=18%  Similarity=0.170  Sum_probs=238.6

Q ss_pred             CCcccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHH
Q 041247            2 DNILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQ   81 (507)
Q Consensus         2 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~   81 (507)
                      ++|.||||+|+..|+.++|++|+++|++++..+..|.||||+|+..|+.+++++|++. +.+++.+ |..|+||||+|+.
T Consensus        12 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~   89 (437)
T 1n11_A           12 ESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQN-KAKVNAK-AKDDQTPLHCAAR   89 (437)
T ss_dssp             ---CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHH-TCCSSCC-CTTSCCHHHHHHH
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCC-CCCCCCHHHHHHH
Confidence            3578999999999999999999999888888888889999999999999999988865 6778877 8888899999999


Q ss_pred             cCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHH
Q 041247           82 ANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLH  161 (507)
Q Consensus        82 ~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll  161 (507)
                      .|+.+++++|+++  +++++..|..|.||||+|+..|+.+++++|++++++. ...+..|.||||+|+..|+.+++++|+
T Consensus        90 ~g~~~~v~~Ll~~--ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll  166 (437)
T 1n11_A           90 IGHTNMVKLLLEN--NANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQ-ACMTKKGFTPLHVAAKYGKVRVAELLL  166 (437)
T ss_dssp             HTCHHHHHHHHHH--TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CCCHHHHHHHHhC--CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC-cCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            9999999999988  7788877888888888888777777777777777765 556666777777777777777777777


Q ss_pred             hccc-cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhc---------------------------------ccCC
Q 041247          162 KQTK-NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKR---------------------------------AENE  207 (507)
Q Consensus       162 ~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~---------------------------------d~~g  207 (507)
                      +.+. .+..+.+|.||||.|+..|+.+++++|+++ +..++.+                                 +..|
T Consensus       167 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g  245 (437)
T 1n11_A          167 ERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPR-GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQG  245 (437)
T ss_dssp             HTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGG-TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred             hCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC
Confidence            7666 555666666666666666666666666655 2233334                                 4444


Q ss_pred             chHHHHHHhcCCccc-cccccccccc------cccchhhh-hhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHH
Q 041247          208 ETALHVLARKDLTST-NQNRRGTFFQ------RCFNLGAE-KEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLI  279 (507)
Q Consensus       208 ~t~Lh~A~~~~~~~~-~~~~~~~~~~------~~~~~~~~-~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~L  279 (507)
                      .||||+|+..|+.++ ..++..+.+.      +.+++..+ ..++   .+++++|++++. +++.      .+..|+|||
T Consensus       246 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~-~~~~------~~~~g~t~L  315 (437)
T 1n11_A          246 VTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGH---VPVADVLIKHGV-MVDA------TTRMGYTPL  315 (437)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTC---HHHHHHHHHHTC-CTTC------CCSSCCCHH
T ss_pred             CCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCC---HHHHHHHHhCCc-cCCC------CCCCCCCHH
Confidence            555555555554444 1122222221      23333333 3333   667777777766 5554      233448999


Q ss_pred             HHHHHcCcHHHHHHHHHHCcccccccccCCCchHHHHHHhCchHHHHHHHhchhhhhhhhccccCCCCC
Q 041247          280 FDAAKRGNVLFLLILIREYADLMRKCDENGYTIFHVAVLNRLEELFKFIYDAKSIADLMVDSNDGEGEM  348 (507)
Q Consensus       280 h~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~d~~g~t  348 (507)
                      |+|+.+|+.++|++|+++|+++ +.+|..|+||||+|+++|+.+++++|+++|+++    +.+|.+|+|
T Consensus       316 ~~A~~~g~~~~v~~Ll~~gad~-n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~----~~~~~~g~t  379 (437)
T 1n11_A          316 HVASHYGNIKLVKFLLQHQADV-NAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASP----NEVSSDGTT  379 (437)
T ss_dssp             HHHHHSSCSHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS----CCCCSSSCC
T ss_pred             HHHHHcCcHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCC----CCCCCCCCC
Confidence            9999999999999999999987 888889999999999999999999999999888    778888888

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=3.4e-47  Score=386.30  Aligned_cols=312  Identities=17%  Similarity=0.139  Sum_probs=225.4

Q ss_pred             cccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcC
Q 041247            4 ILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQAN   83 (507)
Q Consensus         4 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g   83 (507)
                      |.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++. +.+.+.. +..|.||||+|+..|
T Consensus        80 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~-~~~g~t~L~~A~~~g  157 (437)
T 1n11_A           80 DQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK-EASQACM-TKKGFTPLHVAAKYG  157 (437)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSCCC-CTTSCCHHHHHHHTT
T ss_pred             CCCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC-CCCCcCC-CCCCCCHHHHHHHcC
Confidence            34444444444444444444444444444444444444444444444444444432 3333333 455666666666666


Q ss_pred             CHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhc
Q 041247           84 CIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQ  163 (507)
Q Consensus        84 ~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~  163 (507)
                      +.+++++|+++  +++++..|..|.||||+|+..|+.+++++|++++++. +.++..|.||||+|+..|+.+++++|++.
T Consensus       158 ~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  234 (437)
T 1n11_A          158 KVRVAELLLER--DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP-HSPAWNGYTPLHIAAKQNQVEVARSLLQY  234 (437)
T ss_dssp             CHHHHHHHHHT--TCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CHHHHHHHHhC--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            66666666666  5666777777777777777777777777777777775 66777778888888888888888888887


Q ss_pred             cc-cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCccc-ccccccccc------cccc
Q 041247          164 TK-NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTST-NQNRRGTFF------QRCF  235 (507)
Q Consensus       164 ~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~-~~~~~~~~~------~~~~  235 (507)
                      +. .+..+..|.||||.|+..|+.+++++|+++ +.+.+.+|..|+||||+|+..|+.++ ..++..+..      .+.+
T Consensus       235 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t  313 (437)
T 1n11_A          235 GGSANAESVQGVTPLHLAAQEGHAEMVALLLSK-QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYT  313 (437)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCC
T ss_pred             CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCC
Confidence            77 677788888999999999999999998887 56677889999999999999998877 333333333      3456


Q ss_pred             chhhh-hhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCcccccccccCCCchHH
Q 041247          236 NLGAE-KEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIFH  314 (507)
Q Consensus       236 ~~~~~-~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~  314 (507)
                      ++.++ ..++   .+++++|+++++ +++.    .+.  .|+||||+|+++|+.++|++|+++|+++ +.+|.+|+|||+
T Consensus       314 ~L~~A~~~g~---~~~v~~Ll~~ga-d~n~----~~~--~g~t~L~~A~~~g~~~iv~~Ll~~ga~~-~~~~~~g~t~l~  382 (437)
T 1n11_A          314 PLHVASHYGN---IKLVKFLLQHQA-DVNA----KTK--LGYSPLHQAAQQGHTDIVTLLLKNGASP-NEVSSDGTTPLA  382 (437)
T ss_dssp             HHHHHHHSSC---SHHHHHHHHTTC-CTTC----CCT--TSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCSSSCCHHH
T ss_pred             HHHHHHHcCc---HHHHHHHHhcCC-CCCC----CCC--CCCCHHHHHHHCChHHHHHHHHHCcCCC-CCCCCCCCCHHH
Confidence            66666 4444   899999999998 7765    333  4499999999999999999999999998 999999999999


Q ss_pred             HHHHhCchHHHHHHHhch
Q 041247          315 VAVLNRLEELFKFIYDAK  332 (507)
Q Consensus       315 ~A~~~~~~~iv~~Ll~~g  332 (507)
                      +|.+.|+.+++++|....
T Consensus       383 ~A~~~g~~~~~~~l~~~~  400 (437)
T 1n11_A          383 IAKRLGYISVTDVLKVVT  400 (437)
T ss_dssp             HHHHTTCHHHHHHHHHHC
T ss_pred             HHHHcCcHHHHHHHHhcc
Confidence            999999999999997654

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=7.7e-46  Score=363.09  Aligned_cols=289  Identities=17%  Similarity=0.109  Sum_probs=255.4

Q ss_pred             CcccHHHHHHHcCCChhhHHHHhCCCCCCCccc-cCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHH
Q 041247            3 NILSGLGWVMTNGIKEAPRVLLSNGGANLSEDS-LRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQ   81 (507)
Q Consensus         3 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~   81 (507)
                      +|.||||.|+++|+.++|++||++|++++.++. .|+||||+|+..|+.+++++|++. +++++.+ +..+.+|++.++.
T Consensus        24 ~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~-ga~~~~~-~~~~~~~~~~~~~  101 (337)
T 4g8k_A           24 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH-GADPVLR-KKNGATPFILAAI  101 (337)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTCCCHHHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHc-CCchhhh-ccCCCchhHHHHh
Confidence            367999999999999999999999999988765 599999999999999999988864 8889888 9999999999999


Q ss_pred             cCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCC---------ccCCCCCChHHHHHHHcC
Q 041247           82 ANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIA---------MVPDMDGTLPIVRAAALE  152 (507)
Q Consensus        82 ~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~---------~~~~~~g~tpL~~A~~~g  152 (507)
                      .++.++++.+++.  +.+++..|..|.||||+|+..|+.+++++|+++|+++.         ...+..|.||||+|+..|
T Consensus       102 ~~~~~~~~~~~~~--~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g  179 (337)
T 4g8k_A          102 AGSVKLLKLFLSK--GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG  179 (337)
T ss_dssp             HTCHHHHHHHHTT--TCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHT
T ss_pred             cccchhhHHhhhc--cchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCC
Confidence            9999999999998  79999999999999999999999999999999998862         234567899999999999


Q ss_pred             cHHHHHHHHhc-cc-cccCCCChhhHHHHHHHcCC----hHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCccccccc
Q 041247          153 QGQMVLLLHKQ-TK-NSLTDDDCIELLVQLIETGF----YVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNR  226 (507)
Q Consensus       153 ~~~~v~~Ll~~-~~-~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~  226 (507)
                      +.+++++|++. ++ ++..|..|.|++|.++..+.    .++++.|++. +.+++.+|.+|+||||+|+..++       
T Consensus       180 ~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~-gad~n~~d~~g~t~L~~a~~~~~-------  251 (337)
T 4g8k_A          180 HVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH-GADVNVRGERGKTPLILAVEKKH-------  251 (337)
T ss_dssp             CHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHT-TCCTTCCCGGGCCHHHHHHHTTC-------
T ss_pred             CHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHhhh-------
Confidence            99999999965 66 88899999999998877654    3467777777 77888999999999999999999       


Q ss_pred             cccccccccchhhhhhhhHHHHHHHHHHHHH-HhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCccccccc
Q 041247          227 RGTFFQRCFNLGAEKEENKQALELVESLWTE-VVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKC  305 (507)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~  305 (507)
                                           .++++.|++. +. +++.    .+.+|  +||||+|+++|+.++|++|+++|+++ +  
T Consensus       252 ---------------------~~~v~~Ll~~~~~-~vn~----~d~~G--~TpL~~A~~~g~~~iv~~Ll~~GAd~-n--  300 (337)
T 4g8k_A          252 ---------------------LGLVQRLLEQEHI-EIND----TDSDG--KTALLLAVELKLKKIAELLCKRGAST-D--  300 (337)
T ss_dssp             ---------------------HHHHHHHHTSTTC-CTTC----BCTTS--CBHHHHHHHTTCHHHHHHHHTTSCSS-T--
T ss_pred             ---------------------hHHHHHHHHhcCC-cccC----cCCCC--CCHHHHHHHcCCHHHHHHHHHCCCCC-C--
Confidence                                 9999999874 44 5554    44444  99999999999999999999999987 4  


Q ss_pred             ccCCCchHHHHHHhCchHHHHHHHhchhhhhh
Q 041247          306 DENGYTIFHVAVLNRLEELFKFIYDAKSIADL  337 (507)
Q Consensus       306 d~~g~t~L~~A~~~~~~~iv~~Ll~~ga~~~~  337 (507)
                         ++||||+|+++++.++|++|+++||+++.
T Consensus       301 ---~~~~L~~A~~~~~~~iv~~Ll~~GA~~d~  329 (337)
T 4g8k_A          301 ---CGDLVMTARRNYDHSLVKVLLSHGAKEDF  329 (337)
T ss_dssp             ---TCCHHHHHHHTTCHHHHHHHHHTTCCC--
T ss_pred             ---CCCHHHHHHHcCCHHHHHHHHHCcCCCCC
Confidence               45799999999999999999999999854

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=5.1e-44  Score=340.96  Aligned_cols=273  Identities=15%  Similarity=0.089  Sum_probs=179.2

Q ss_pred             cccHHHHHHHcCCChhhHHHHhCCCCCCCc-cccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHc
Q 041247            4 ILSGLGWVMTNGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQA   82 (507)
Q Consensus         4 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~   82 (507)
                      |.||||.|++.|+.+++++|+++|.+.+.. +..|.||||+|+..|+.+++++|++. +.+++.+ |..|.||||+|+..
T Consensus         5 g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~   82 (285)
T 1wdy_A            5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH-GADPVLR-KKNGATPFLLAAIA   82 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTCCCHHHHHHHH
T ss_pred             cchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCccc-CCCCCCHHHHHHHc
Confidence            555666666666666666666665555544 44555555555555555555555543 4445544 55555555555555


Q ss_pred             CCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHh
Q 041247           83 NCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHK  162 (507)
Q Consensus        83 g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  162 (507)
                      |+.+++++|+++  +.+++.+|..|.||||+|+..|+.+++++|+++++++ +..+.....                   
T Consensus        83 ~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~~~-------------------  140 (285)
T 1wdy_A           83 GSVKLLKLFLSK--GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANV-NLRRKTKED-------------------  140 (285)
T ss_dssp             TCHHHHHHHHHT--TCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCCCHH-------------------
T ss_pred             CCHHHHHHHHHc--CCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCc-ccccccHHH-------------------
Confidence            555555555555  4555555555555555555555555555555555553 222110000                   


Q ss_pred             ccccccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCccccccccccccccccchhhhhh
Q 041247          163 QTKNSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKE  242 (507)
Q Consensus       163 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (507)
                         ....+..|.||||.|+..|+.+++++|++..+.+++.+|..|+||||+|+..++.                      
T Consensus       141 ---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~----------------------  195 (285)
T 1wdy_A          141 ---QERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD----------------------  195 (285)
T ss_dssp             ---HHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCT----------------------
T ss_pred             ---HHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcccc----------------------
Confidence               0112556667777777777777777777765666777788888888888877761                      


Q ss_pred             hhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHH-HCcccccccccCCCchHHHHHHhCc
Q 041247          243 ENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIR-EYADLMRKCDENGYTIFHVAVLNRL  321 (507)
Q Consensus       243 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~-~~~~~~~~~d~~g~t~L~~A~~~~~  321 (507)
                        ....+++++|++++. +++.    .+..  |+||||+|+++|+.+++++|++ .|+++ +.+|..|+||||+|+++++
T Consensus       196 --~~~~~i~~~Ll~~g~-~~~~----~~~~--g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~~~~g~t~l~~A~~~~~  265 (285)
T 1wdy_A          196 --SDVEAITHLLLDHGA-DVNV----RGER--GKTPLILAVEKKHLGLVQRLLEQEHIEI-NDTDSDGKTALLLAVELKL  265 (285)
T ss_dssp             --TTHHHHHHHHHHTTC-CSSC----CCTT--SCCHHHHHHHTTCHHHHHHHHHSSSCCT-TCCCTTSCCHHHHHHHTTC
T ss_pred             --chHHHHHHHHHHcCC-CCCC----cCCC--CCcHHHHHHHcCCHHHHHHHHhccCCCc-cccCCCCCcHHHHHHHcCc
Confidence              112678888888887 6664    2333  4899999999999999999998 78887 8899999999999999999


Q ss_pred             hHHHHHHHhchhhh
Q 041247          322 EELFKFIYDAKSIA  335 (507)
Q Consensus       322 ~~iv~~Ll~~ga~~  335 (507)
                      .+++++|+++|+++
T Consensus       266 ~~i~~~Ll~~Ga~~  279 (285)
T 1wdy_A          266 KKIAELLCKRGAST  279 (285)
T ss_dssp             HHHHHHHHHHSSCS
T ss_pred             HHHHHHHHHcCCCC
Confidence            99999999999987

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2.1e-43  Score=336.77  Aligned_cols=228  Identities=19%  Similarity=0.183  Sum_probs=202.9

Q ss_pred             CcccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHc
Q 041247            3 NILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQA   82 (507)
Q Consensus         3 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~   82 (507)
                      +|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|++. +.+++.+ |..|.||||+|+..
T Consensus        38 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~  115 (285)
T 1wdy_A           38 GGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSK-GADVNEC-DFYGFTAFMEAAVY  115 (285)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCB-CTTCCBHHHHHHHT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcc-CcccCCHHHHHHHh
Confidence            578999999999999999999999999999999999999999999999999988875 7888888 99999999999999


Q ss_pred             CCHHHHHHHHHcCCchhhccc----------ccCCCcHHHHHHHcCcHHHHHHHHhc-CCCCCccCCCCCChHHHHHHHc
Q 041247           83 NCIDFVKELLKMMSTEDLAKK----------NKIGCTAFFYAAASGMVEIVEEMMKG-NKDIAMVPDMDGTLPIVRAAAL  151 (507)
Q Consensus        83 g~~e~v~~Ll~~~~~~~~~~~----------d~~g~t~Lh~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~  151 (507)
                      |+.+++++|+++  +.+++..          +..|.||||+|+..|+.+++++|++. +.++ +.+|..|.||||+|+..
T Consensus       116 ~~~~~~~~Ll~~--g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~~g~t~l~~a~~~  192 (285)
T 1wdy_A          116 GKVKALKFLYKR--GANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNALIHALLS  192 (285)
T ss_dssp             TCHHHHHHHHHT--TCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCT-TCCCTTSCCHHHHHHHC
T ss_pred             CCHHHHHHHHHh--CCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCC-CccCCCCCCHHHHHHHc
Confidence            999999999999  7887776          78899999999999999999999987 8886 88999999999999999


Q ss_pred             Cc----HHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCccccccc
Q 041247          152 EQ----GQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNR  226 (507)
Q Consensus       152 g~----~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~  226 (507)
                      ++    .+++++|++.+. .+.++.+|.||||.|++.|+.+++++|++..+.+++.+|.+|+||||+|++.++       
T Consensus       193 ~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~-------  265 (285)
T 1wdy_A          193 SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKL-------  265 (285)
T ss_dssp             SCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTC-------
T ss_pred             cccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCc-------
Confidence            98    889999999988 777888888888888888888888888886677777777788888888877777       


Q ss_pred             cccccccccchhhhhhhhHHHHHHHHHHHHHHhhccch
Q 041247          227 RGTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSES  264 (507)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~  264 (507)
                                           .+++++|+++|+ +++.
T Consensus       266 ---------------------~~i~~~Ll~~Ga-~~~~  281 (285)
T 1wdy_A          266 ---------------------KKIAELLCKRGA-STDC  281 (285)
T ss_dssp             ---------------------HHHHHHHHHHSS-CSCC
T ss_pred             ---------------------HHHHHHHHHcCC-CCCc
Confidence                                 777777777776 5554

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=2.9e-43  Score=346.27  Aligned_cols=292  Identities=17%  Similarity=0.095  Sum_probs=233.1

Q ss_pred             CcccHHHHHHHcCCChhhHHHHhC-CCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHH
Q 041247            3 NILSGLGWVMTNGIKEAPRVLLSN-GGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQ   81 (507)
Q Consensus         3 ~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~   81 (507)
                      .+.|+||.|++.|+.+.++.++.. +.+.+..|..|.||||+|+..|+.+++++|++. +.+++.+ |..|+||||+|+.
T Consensus        23 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~  100 (351)
T 3utm_A           23 YKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQH-GADVHAK-DKGGLVPLHNACS  100 (351)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTCCCHHHHHHH
T ss_pred             ccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcc-CCCCCcHHHHHHH
Confidence            367999999999999999888876 666777889999999999999999999988865 7888888 8999999999999


Q ss_pred             cCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHH
Q 041247           82 ANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLH  161 (507)
Q Consensus        82 ~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll  161 (507)
                      .|+.+++++|+++  +++++..|..|.||||+|+..|+.+++++|+++|++. +..+..|.||+++|+..+..+.+++..
T Consensus       101 ~g~~~iv~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~~~l~~a~~~~~~~~~~~~~  177 (351)
T 3utm_A          101 YGHYEVTELLLKH--GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADP-TLVNCHGKSAVDMAPTPELRERLTYEF  177 (351)
T ss_dssp             TTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCSSHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-ccccCCCCcchHHHhhhhhHHHHHhhh
Confidence            9999999999999  8999999999999999999999999999999999996 888999999999988777777666655


Q ss_pred             hccccccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCccccccccccccccccchhhhh
Q 041247          162 KQTKNSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEK  241 (507)
Q Consensus       162 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (507)
                      ..           .++..++..++.+.++.++.... .....+..|.||||+|+..++                      
T Consensus       178 ~~-----------~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~t~L~~A~~~~~----------------------  223 (351)
T 3utm_A          178 KG-----------HSLLQAAREADLAKVKKTLALEI-INFKQPQSHETALHCAVASLH----------------------  223 (351)
T ss_dssp             HH-----------HHHHHHHHTTCHHHHHHHTTTCC-TTCCCTTTCCCHHHHHHHCCS----------------------
T ss_pred             cc-----------cHHHHHHHhccHHHHHHHHHhhc-ccccCCCCCCCHHHHHHHHhC----------------------
Confidence            42           45666677777777777776632 233456677778887777744                      


Q ss_pred             hhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCcccccccccCCCchHHHHHHhCc
Q 041247          242 EENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIFHVAVLNRL  321 (507)
Q Consensus       242 ~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~  321 (507)
                         ....+++++|++++. +++.    .+.  .|+||||+|+++|+.+++++|+++|+++ +.+|..|+||||+|+.+++
T Consensus       224 ---~~~~~~~~~Ll~~g~-~~~~----~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-n~~d~~g~t~L~~A~~~~~  292 (351)
T 3utm_A          224 ---PKRKQVAELLLRKGA-NVNE----KNK--DFMTPLHVAAERAHNDVMEVLHKHGAKM-NALDSLGQTALHRAALAGH  292 (351)
T ss_dssp             ---TTHHHHHHHHHHTTC-CTTC----CCT--TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTC
T ss_pred             ---ccHHHHHHHHHHcCC-CcCC----cCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCc
Confidence               111677777777776 5554    222  3377888888888888888888777776 7777777888888887778


Q ss_pred             hHHHHHHHhchhhhhhhhccccCCCCC
Q 041247          322 EELFKFIYDAKSIADLMVDSNDGEGEM  348 (507)
Q Consensus       322 ~~iv~~Ll~~ga~~~~~~~~~d~~g~t  348 (507)
                      .+++++|+++|+++    +.+|.+|+|
T Consensus       293 ~~~v~~Ll~~gad~----~~~~~~g~t  315 (351)
T 3utm_A          293 LQTCRLLLSYGSDP----SIISLQGFT  315 (351)
T ss_dssp             HHHHHHHHHTTCCT----TCCCTTSCC
T ss_pred             HHHHHHHHHcCCCC----CCcCCCCCC
Confidence            88888888777776    667777777

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=3.7e-43  Score=348.54  Aligned_cols=258  Identities=17%  Similarity=0.149  Sum_probs=225.0

Q ss_pred             ccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccC-CCCCcHHHHHHHcCCHHHHHHHH--------HcCCchhhccc
Q 041247           33 EDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEIT-NLGNTALHVAAQANCIDFVKELL--------KMMSTEDLAKK  103 (507)
Q Consensus        33 ~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~-~~g~t~Lh~Aa~~g~~e~v~~Ll--------~~~~~~~~~~~  103 (507)
                      .+..|.||||.|+..|+ ++++.|+.   .+++.. | ..|+||||+|+..|+.+++++|+        +.  |++++.+
T Consensus        90 ~~~~g~t~L~~Aa~~~~-~~~~~L~~---~~~n~~-d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~--ga~vn~~  162 (373)
T 2fo1_E           90 PEPESPIKLHTEAAGSY-AITEPITR---ESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAA--GADVNAM  162 (373)
T ss_dssp             ----CCCHHHHHHHSSS-CCCSCCST---TTTTTC-CCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHT--CCCTTCC
T ss_pred             CCCCCccHHHHHhcCCc-hHHHHhcc---cccccc-CCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhc--CCCCcCC
Confidence            46789999999999665 77776643   457777 5 78999999999999998888877        56  8999999


Q ss_pred             ccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhcc---c-cccCCCChhhHHHH
Q 041247          104 NKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQT---K-NSLTDDDCIELLVQ  179 (507)
Q Consensus       104 d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~---~-~~~~~~~g~t~L~~  179 (507)
                      |..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.+   . .+..|.+|.||||.
T Consensus       163 d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~  241 (373)
T 2fo1_E          163 DCDENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMI  241 (373)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHH
T ss_pred             CCCCCCHHHHHHHcChHHHHHHHHHCCCCC-cccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHH
Confidence            999999999999999999999999999997 889999999999999999999999999988   4 77789999999999


Q ss_pred             HHHcC---ChHHHHHHHhcCchhhh--------hcccCCchHHHHHHhcCCccccccccccccccccchhhhhhhhHHHH
Q 041247          180 LIETG---FYVVALQLLRDRPRLAT--------KRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKEENKQAL  248 (507)
Q Consensus       180 A~~~~---~~~~v~~Ll~~~~~~~~--------~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (507)
                      |+..+   +.+++++|++.. .+++        .+|..|+||||+|+..|+                            .
T Consensus       242 A~~~~~~~~~~~v~~Ll~~g-~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~----------------------------~  292 (373)
T 2fo1_E          242 VAHNEGRDQVASAKLLVEKG-AKVDYDGAARKDSEKYKGRTALHYAAQVSN----------------------------M  292 (373)
T ss_dssp             HHHSCSTTHHHHHHHHHHHT-CCSSCCSGGGTSSSSCCCCCTHHHHHSSCC----------------------------H
T ss_pred             HHHhCCcchHHHHHHHHHCC-CCcccccccccCcccccCCCHHHHHHHhCC----------------------------H
Confidence            99998   899999999983 3333        367799999999999999                            9


Q ss_pred             HHHHHHHHHH-hhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCcccccccccCCCchHHHHHHhCchHHHHH
Q 041247          249 ELVESLWTEV-VLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIFHVAVLNRLEELFKF  327 (507)
Q Consensus       249 ~~v~~Ll~~~-~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~iv~~  327 (507)
                      +++++|++++ . +++.    .+..  |+||||+|+++|+.+++++|+++|+++ +.+|..|+||||+|+.+++.+++++
T Consensus       293 ~~v~~Ll~~~~~-~~n~----~d~~--g~TpL~~A~~~g~~~iv~~Ll~~gad~-~~~d~~g~t~l~~A~~~g~~~iv~~  364 (373)
T 2fo1_E          293 PIVKYLVGEKGS-NKDK----QDED--GKTPIMLAAQEGRIEVVMYLIQQGASV-EAVDATDHTARQLAQANNHHNIVDI  364 (373)
T ss_dssp             HHHHHHHHHSCC-CTTC----CCTT--CCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCSSSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHhcCC-CccC----cCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCc-cCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            9999999886 5 6554    3344  499999999999999999999999998 9999999999999999999999999


Q ss_pred             HHhchhhh
Q 041247          328 IYDAKSIA  335 (507)
Q Consensus       328 Ll~~ga~~  335 (507)
                      |+++|++.
T Consensus       365 Ll~~~a~~  372 (373)
T 2fo1_E          365 FDRCRPER  372 (373)
T ss_dssp             HHTTC---
T ss_pred             HHhcCccc
Confidence            99998764

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=3.9e-42  Score=328.27  Aligned_cols=258  Identities=11%  Similarity=0.039  Sum_probs=202.9

Q ss_pred             cccCCHHhHHHHHcCCHHHHHHHHhhch----------hccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhccc
Q 041247           34 DSLRRLKLYRAALNGDWAVAKDIYDKYK----------VEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKK  103 (507)
Q Consensus        34 ~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~----------~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~  103 (507)
                      ...|.|+||+|+..|+.+.+..++...+          ..++.+ |..|+||||+|+..|+.+++++|++.  +.+++.+
T Consensus        12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~g~t~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~   88 (285)
T 3d9h_A           12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGD-AVSDWSPMHEAAIHGHQLSLRNLISQ--GWAVNII   88 (285)
T ss_dssp             ------------------------------CCSEECCCCTTCSS-SCCSCCHHHHHHHTTCHHHHHHHHHT--TCCSCEE
T ss_pred             chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCC-CccCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCc
Confidence            5578899999999999777776554422          123444 88899999999999999999999998  7899999


Q ss_pred             ccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccccccCCCChhhHHHHHHHc
Q 041247          104 NKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTKNSLTDDDCIELLVQLIET  183 (507)
Q Consensus       104 d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~A~~~  183 (507)
                      |..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.++....+.+|.||||.|+..
T Consensus        89 ~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~  167 (285)
T 3d9h_A           89 TADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARR  167 (285)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTTSCHHHHHHHH
T ss_pred             CCCCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHc
Confidence            999999999999999999999999999997 8899999999999999999999999999988222345699999999999


Q ss_pred             CChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCccccccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhccc
Q 041247          184 GFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSE  263 (507)
Q Consensus       184 ~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~  263 (507)
                      |+.+++++|++. +.+++.+|..|+||||+|+..++                            .+++++|+++++ +++
T Consensus       168 g~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~~~----------------------------~~~v~~Ll~~ga-~~~  217 (285)
T 3d9h_A          168 GHVECVNSLIAY-GGNIDHKISHLGTPLYLACENQQ----------------------------RACVKKLLESGA-DVN  217 (285)
T ss_dssp             TCHHHHHHHHHT-TCCTTCCBTTTBCHHHHHHHTTC----------------------------HHHHHHHHHTTC-CTT
T ss_pred             CCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcCc----------------------------HHHHHHHHHCCC-CCC
Confidence            999999999988 56778899999999999999999                            999999999988 766


Q ss_pred             hhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCcccccccccCCCchHHHHHHhCchHHHHHHHhc-hhhh
Q 041247          264 SVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIFHVAVLNRLEELFKFIYDA-KSIA  335 (507)
Q Consensus       264 ~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~-ga~~  335 (507)
                      .     +  ..|+||||+|++.|+.+++++|+++|+++ +.+|..|+||||+|+  ++.+++++|+++ |++.
T Consensus       218 ~-----~--~~g~t~L~~A~~~~~~~~v~~Ll~~gad~-~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l  280 (285)
T 3d9h_A          218 Q-----G--KGQDSPLHAVVRTASEELACLLMDFGADT-QAKNAEGKRPVELVP--PESPLAQLFLEREGASL  280 (285)
T ss_dssp             C-----C--BTTBCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCGGGGSC--TTSHHHHHHHHHC----
T ss_pred             C-----C--CCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHhc--CccHHHHHHHHhhccCC
Confidence            2     3  33499999999999999999999999998 999999999999999  567999999998 6654

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=3.5e-41  Score=330.01  Aligned_cols=266  Identities=18%  Similarity=0.175  Sum_probs=239.2

Q ss_pred             cccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHH
Q 041247           34 DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFY  113 (507)
Q Consensus        34 ~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~  113 (507)
                      +.+|.|+||.|+++|+.++|++||+. +++++.+.+..|+||||+|++.|+.++|++|+++  |++++.+|..+.+|++.
T Consensus        22 ~~~~~t~L~~Av~~g~~~~V~~LL~~-Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~--ga~~~~~~~~~~~~~~~   98 (337)
T 4g8k_A           22 AVEDNHLLIKAVQNEDVDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH--GADPVLRKKNGATPFIL   98 (337)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHH
T ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHC-CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHc--CCchhhhccCCCchhHH
Confidence            34688999999999999999999875 8899987345699999999999999999999999  89999999999999999


Q ss_pred             HHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc-ccc----------CCCChhhHHHHHHH
Q 041247          114 AAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK-NSL----------TDDDCIELLVQLIE  182 (507)
Q Consensus       114 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~----------~~~~g~t~L~~A~~  182 (507)
                      ++..+..+++..+++.++++ +.+|..|.||||+|+..|+.+++++|++.++ .+.          .+..|.||||.|++
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~-~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~  177 (337)
T 4g8k_A           99 AAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE  177 (337)
T ss_dssp             HHHHTCHHHHHHHHTTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHH
T ss_pred             HHhcccchhhHHhhhccchh-hhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHH
Confidence            99999999999999999997 8899999999999999999999999999987 332          35678999999999


Q ss_pred             cCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCccccccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhcc
Q 041247          183 TGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTEVVLSS  262 (507)
Q Consensus       183 ~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~  262 (507)
                      .|+.+++++|+++.+.+++.+|..|+|++|.++..+..                        ....+++++|+++++ ++
T Consensus       178 ~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~------------------------~~~~~i~~lLl~~ga-d~  232 (337)
T 4g8k_A          178 KGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD------------------------SDVEAITHLLLDHGA-DV  232 (337)
T ss_dssp             HTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCT------------------------TTHHHHHHHHHHTTC-CT
T ss_pred             CCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCc------------------------ccHHHHHHHHHHCCC-CC
Confidence            99999999999887888999999999999988776541                        112568899999998 77


Q ss_pred             chhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHH-CcccccccccCCCchHHHHHHhCchHHHHHHHhchhhh
Q 041247          263 ESVSEISKLIARPTRLIFDAAKRGNVLFLLILIRE-YADLMRKCDENGYTIFHVAVLNRLEELFKFIYDAKSIA  335 (507)
Q Consensus       263 ~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~-~~~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~ga~~  335 (507)
                      +.    .+..|  +||||+|++.|+.++++.|++. ++++ +.+|.+|+||||+|+++|+.++|++|+++|+++
T Consensus       233 n~----~d~~g--~t~L~~a~~~~~~~~v~~Ll~~~~~~v-n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~  299 (337)
T 4g8k_A          233 NV----RGERG--KTPLILAVEKKHLGLVQRLLEQEHIEI-NDTDSDGKTALLLAVELKLKKIAELLCKRGAST  299 (337)
T ss_dssp             TC----CCGGG--CCHHHHHHHTTCHHHHHHHHTSTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSS
T ss_pred             CC----cCCCC--CCHHHHHHHhhhhHHHHHHHHhcCCcc-cCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            75    34445  9999999999999999999985 6776 999999999999999999999999999999987

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=9e-42  Score=338.59  Aligned_cols=256  Identities=18%  Similarity=0.072  Sum_probs=230.0

Q ss_pred             CcccHHHHHHHcCCChhhHHHHhCCCCCCCcc-ccCCHHhHHHHHcCCHHHHHHHHh-------hchhccccccCCCCCc
Q 041247            3 NILSGLGWVMTNGIKEAPRVLLSNGGANLSED-SLRRLKLYRAALNGDWAVAKDIYD-------KYKVEIGQEITNLGNT   74 (507)
Q Consensus         3 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~Lh~Aa~~g~~~~v~~ll~-------~~~~~i~~~~~~~g~t   74 (507)
                      +|.||||.|+..| .+++++|++.  +.+..| ..|.||||+|+..|+.+++++|+.       +.+.+++.+ |..|+|
T Consensus        93 ~g~t~L~~Aa~~~-~~~~~~L~~~--~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~-d~~g~T  168 (373)
T 2fo1_E           93 ESPIKLHTEAAGS-YAITEPITRE--SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAM-DCDENT  168 (373)
T ss_dssp             -CCCHHHHHHHSS-SCCCSCCSTT--TTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCC-CTTSCC
T ss_pred             CCccHHHHHhcCC-chHHHHhccc--cccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCC-CCCCCC
Confidence            5889999999955 5888888753  566666 789999999999999998887774       568899998 999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcC---CCCCccCCCCCChHHHHHHHc
Q 041247           75 ALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGN---KDIAMVPDMDGTLPIVRAAAL  151 (507)
Q Consensus        75 ~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~---~~~~~~~~~~g~tpL~~A~~~  151 (507)
                      |||+|+..|+.++|++|+++  |++++.+|..|.||||+|+..|+.+++++|++.+   .++ +..|..|.||||+|+..
T Consensus       169 pL~~A~~~g~~~iv~~Ll~~--ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~d~~g~t~L~~A~~~  245 (373)
T 2fo1_E          169 PLMLAVLARRRRLVAYLMKA--GADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDI-EELDRNGMTALMIVAHN  245 (373)
T ss_dssp             HHHHHHHHTCHHHHHHHHHT--TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTT-SCCCTTSCCHHHHHHHS
T ss_pred             HHHHHHHcChHHHHHHHHHC--CCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccCh-hhcCCCCCCHHHHHHHh
Confidence            99999999999999999999  8999999999999999999999999999999988   575 78899999999999999


Q ss_pred             C---cHHHHHHHHhccc-ccc--------CCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCC
Q 041247          152 E---QGQMVLLLHKQTK-NSL--------TDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDL  219 (507)
Q Consensus       152 g---~~~~v~~Ll~~~~-~~~--------~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~  219 (507)
                      +   +.+++++|++.++ .+.        .|..|.||||.|+..|+.+++++|++..+.+++.+|.+|+||||+|+..|+
T Consensus       246 ~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~  325 (373)
T 2fo1_E          246 EGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGR  325 (373)
T ss_dssp             CSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCC
Confidence            8   8999999999998 443        567899999999999999999999999778899999999999999999999


Q ss_pred             ccccccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCc
Q 041247          220 TSTNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYA  299 (507)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~  299 (507)
                                                  .+++++|+++++ +++.    .+.  .|+||||+|+++|+.+++++|+++++
T Consensus       326 ----------------------------~~iv~~Ll~~ga-d~~~----~d~--~g~t~l~~A~~~g~~~iv~~Ll~~~a  370 (373)
T 2fo1_E          326 ----------------------------IEVVMYLIQQGA-SVEA----VDA--TDHTARQLAQANNHHNIVDIFDRCRP  370 (373)
T ss_dssp             ----------------------------HHHHHHHHHTTC-CSSC----CCS--SSCCHHHHHHHTTCHHHHHHHHTTC-
T ss_pred             ----------------------------HHHHHHHHHcCC-CccC----CCC--CCCCHHHHHHHcCCHHHHHHHHhcCc
Confidence                                        999999999998 7775    333  44999999999999999999999987


Q ss_pred             c
Q 041247          300 D  300 (507)
Q Consensus       300 ~  300 (507)
                      +
T Consensus       371 ~  371 (373)
T 2fo1_E          371 E  371 (373)
T ss_dssp             -
T ss_pred             c
Confidence            6

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.8e-40  Score=315.43  Aligned_cols=254  Identities=16%  Similarity=0.091  Sum_probs=203.1

Q ss_pred             CcccHHHHHHHcCCChhhHHHHhCCC-----------CCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCC
Q 041247            3 NILSGLGWVMTNGIKEAPRVLLSNGG-----------ANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNL   71 (507)
Q Consensus         3 ~g~t~L~~A~~~g~~~~v~~Ll~~g~-----------~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~   71 (507)
                      .|.|+||+|+..|+.+.++.++..+.           .....|..|+||||+|+..|+.+++++|++. +.+++.+ |..
T Consensus        14 ~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~-~~~   91 (285)
T 3d9h_A           14 LVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQ-GWAVNII-TAD   91 (285)
T ss_dssp             ----------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHT-TCCSCEE-CTT
T ss_pred             HHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCc-CCC
Confidence            47899999999999877777655432           2345688999999999999999999998875 7888888 999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHc
Q 041247           72 GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAAL  151 (507)
Q Consensus        72 g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~  151 (507)
                      |+||||+|+..|+.+++++|+++  +++++.+|..|+||||+|+..|+.+++++|++.++++ +. +..|.||||+|+..
T Consensus        92 g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~-~~~g~t~L~~A~~~  167 (285)
T 3d9h_A           92 HVSPLHEACLGGHLSCVKILLKH--GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASV-QP-ESDLASPIHEAARR  167 (285)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHT--TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-SC-SCTTSCHHHHHHHH
T ss_pred             CCCHHHHHHHCCcHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCC-CC-CCCCCCHHHHHHHc
Confidence            99999999999999999999999  8999999999999999999999999999999999996 43 45599999999999


Q ss_pred             CcHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCccccccccccc
Q 041247          152 EQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTF  230 (507)
Q Consensus       152 g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~  230 (507)
                      |+.+++++|++.+. .+..|.+|.||||.|+..|+.+++++|++. +.+++ .|..|+||||+|+..++           
T Consensus       168 g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~-~~~~g~t~L~~A~~~~~-----------  234 (285)
T 3d9h_A          168 GHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLES-GADVN-QGKGQDSPLHAVVRTAS-----------  234 (285)
T ss_dssp             TCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHT-TCCTT-CCBTTBCHHHHHHHTTC-----------
T ss_pred             CCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHC-CCCCC-CCCCCCCHHHHHHHcCC-----------
Confidence            99999999999999 888999999999999999999999999998 45555 48899999999999999           


Q ss_pred             cccccchhhhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHH-Cccc
Q 041247          231 FQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIRE-YADL  301 (507)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~-~~~~  301 (507)
                                       .+++++|+++++ +++.    .+.+|  +||||+|+  ++.+++++|+++ ++++
T Consensus       235 -----------------~~~v~~Ll~~ga-d~~~----~d~~g--~t~l~~A~--~~~~~~~~Ll~~~~a~l  280 (285)
T 3d9h_A          235 -----------------EELACLLMDFGA-DTQA----KNAEG--KRPVELVP--PESPLAQLFLEREGASL  280 (285)
T ss_dssp             -----------------HHHHHHHHHTTC-CTTC----CCTTS--CCGGGGSC--TTSHHHHHHHHHC----
T ss_pred             -----------------HHHHHHHHHCCC-CCCC----cCCCC--CCHHHHhc--CccHHHHHHHHhhccCC
Confidence                             999999999988 7765    44444  99999999  456899999998 6654

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=1.2e-40  Score=329.71  Aligned_cols=261  Identities=15%  Similarity=0.105  Sum_probs=156.2

Q ss_pred             ccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHH
Q 041247           33 EDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFF  112 (507)
Q Consensus        33 ~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh  112 (507)
                      .|..|.||||+|+..|+.+++++|++. +.+++.+ |..|+||||+|+..|+.++|++|+++  +++.  .+..|.||||
T Consensus        16 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~--~~~~g~t~L~   89 (364)
T 3ljn_A           16 SDDENMEKIHVAARKGQTDEVRRLIET-GVSPTIQ-NRFGCTALHLACKFGCVDTAKYLASV--GEVH--SLWHGQKPIH   89 (364)
T ss_dssp             CCHHHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTCCCHHHHHHHHCCHHHHHHHHHH--CCCC--CCBTTBCHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCcccc-CCCCCcHHHHHHHcCCHHHHHHHHHC--CCCc--cccCCCCHHH
Confidence            345555555555555555555555543 4455554 55555555555555555555555555  3322  2234555555


Q ss_pred             HHHHcCcHHHHHHHHhc----CCCCCcc-----------------CCCCCChHHHHHHHcC--cHHHHHHHHhccc-ccc
Q 041247          113 YAAASGMVEIVEEMMKG----NKDIAMV-----------------PDMDGTLPIVRAAALE--QGQMVLLLHKQTK-NSL  168 (507)
Q Consensus       113 ~A~~~g~~~iv~~Ll~~----~~~~~~~-----------------~~~~g~tpL~~A~~~g--~~~~v~~Ll~~~~-~~~  168 (507)
                      +|+..|+.+++++|++.    +.+. +.                 +|..|.||||+|+..|  +.+++++|++.++ .+.
T Consensus        90 ~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~  168 (364)
T 3ljn_A           90 LAVMANKTDLVVALVEGAKERGQMP-ESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTA  168 (364)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHTCCH-HHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTC
T ss_pred             HHHHcCCHHHHHHHHHhccccCCCH-HHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcc
Confidence            55555555555555555    3332 22                 4455556666666655  5566666665555 555


Q ss_pred             CCCChhhHHHHHHHcCChHHHHHHHhcCch----hhhhcccCCchHHHHHHhcCCccccccccccccccccchhhhhhhh
Q 041247          169 TDDDCIELLVQLIETGFYVVALQLLRDRPR----LATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKEEN  244 (507)
Q Consensus       169 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~----~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (507)
                      .|..|.||||.|+..|+.+++++|++....    .++.+|..|+||||+|+..|+                         
T Consensus       169 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~-------------------------  223 (364)
T 3ljn_A          169 KDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINW-------------------------  223 (364)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTC-------------------------
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCC-------------------------
Confidence            555556666666666666666666655222    155667777777777777777                         


Q ss_pred             HHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCcccc-----------cccccCCCchH
Q 041247          245 KQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLM-----------RKCDENGYTIF  313 (507)
Q Consensus       245 ~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~-----------~~~d~~g~t~L  313 (507)
                         .+++++|+++++ +++.    .+..  |.||||+|++.|+.+++++|++++++..           ...+..|+||+
T Consensus       224 ---~~~v~~Ll~~ga-d~~~----~d~~--g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  293 (364)
T 3ljn_A          224 ---EDVAMRFVEMGI-DVNM----EDNE--HTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDF  293 (364)
T ss_dssp             ---HHHHHHHHTTTC-CTTC----CCTT--SCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTT
T ss_pred             ---HHHHHHHHHcCC-CCCC----CCCC--CCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccc
Confidence               777777777766 5554    2333  3777777777777777777777766531           12466788888


Q ss_pred             HHHHHhCchHHHHHHHhchhhh
Q 041247          314 HVAVLNRLEELFKFIYDAKSIA  335 (507)
Q Consensus       314 ~~A~~~~~~~iv~~Ll~~ga~~  335 (507)
                      +.|+..++.+.+..|++.+++.
T Consensus       294 ~~aa~~~~~~~v~~ll~~~~~~  315 (364)
T 3ljn_A          294 VPAAADPSKQEVLQLLQEKLDE  315 (364)
T ss_dssp             SCSSCCHHHHHHHHHHHHHHHH
T ss_pred             hhhhhccCHHHHHHHHHHHHHH
Confidence            8888888777777777776654

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=1.8e-40  Score=328.53  Aligned_cols=264  Identities=16%  Similarity=0.094  Sum_probs=230.9

Q ss_pred             CcccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHc
Q 041247            3 NILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQA   82 (507)
Q Consensus         3 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~   82 (507)
                      +|.||||+|+..|+.++|++|+++|++++..|..|.||||+|+..|+.+++++|++. +.+++   +.+|.||||+|+..
T Consensus        19 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~---~~~g~t~L~~A~~~   94 (364)
T 3ljn_A           19 ENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASV-GEVHS---LWHGQKPIHLAVMA   94 (364)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHH-CCCCC---CBTTBCHHHHHHHT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCcc---ccCCCCHHHHHHHc
Confidence            578999999999999999999999999999999999999999999999999999876 44333   44799999999999


Q ss_pred             CCHHHHHHHHHcCC--chhhcc-----------------cccCCCcHHHHHHHcC--cHHHHHHHHhcCCCCCccCCCCC
Q 041247           83 NCIDFVKELLKMMS--TEDLAK-----------------KNKIGCTAFFYAAASG--MVEIVEEMMKGNKDIAMVPDMDG  141 (507)
Q Consensus        83 g~~e~v~~Ll~~~~--~~~~~~-----------------~d~~g~t~Lh~A~~~g--~~~iv~~Ll~~~~~~~~~~~~~g  141 (507)
                      |+.+++++|+++..  +.+++.                 +|..|.||||+|+..|  +.+++++|+++|+++ +.+|..|
T Consensus        95 g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~-~~~d~~g  173 (364)
T 3ljn_A           95 NKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASP-TAKDKAD  173 (364)
T ss_dssp             TCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCT-TCCCTTS
T ss_pred             CCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCC-cccCCCC
Confidence            99999999999720  123333                 8889999999999999  999999999999997 8999999


Q ss_pred             ChHHHHHHHcCcHHHHHHHHhccc------cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHH
Q 041247          142 TLPIVRAAALEQGQMVLLLHKQTK------NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLA  215 (507)
Q Consensus       142 ~tpL~~A~~~g~~~~v~~Ll~~~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~  215 (507)
                      .||||+|+..|+.+++++|++.++      .+..|..|.||||.|+..|+.+++++|++. +.+++.+|.+|+||||+|+
T Consensus       174 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-gad~~~~d~~g~tpL~~A~  252 (364)
T 3ljn_A          174 ETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEM-GIDVNMEDNEHTVPLYLSV  252 (364)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTT-TCCTTCCCTTSCCHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHH
Confidence            999999999999999999999876      456788999999999999999999999998 6778899999999999999


Q ss_pred             hcCCccccccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhccchhhH------HhhhhcCCChHHHHHHHcCcHH
Q 041247          216 RKDLTSTNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSE------ISKLIARPTRLIFDAAKRGNVL  289 (507)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~------~~~~~g~g~t~Lh~A~~~g~~~  289 (507)
                      ..|+                            .+++++|++++. +.+....      ....+..++||++.|+..|+.+
T Consensus       253 ~~g~----------------------------~~~v~~Ll~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~  303 (364)
T 3ljn_A          253 RAAM----------------------------VLLTKELLQKTD-VFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQ  303 (364)
T ss_dssp             HTCC----------------------------HHHHHHHHHHSC-HHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHH
T ss_pred             HhCh----------------------------HHHHHHHHHcCC-chhhhcCcccCcccccccccccccchhhhhccCHH
Confidence            9999                            999999999986 4432110      0012334599999999999999


Q ss_pred             HHHHHHHHCccc
Q 041247          290 FLLILIREYADL  301 (507)
Q Consensus       290 iv~~Ll~~~~~~  301 (507)
                      .+..|++.+.+.
T Consensus       304 ~v~~ll~~~~~~  315 (364)
T 3ljn_A          304 EVLQLLQEKLDE  315 (364)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999888776

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=1.4e-39  Score=319.90  Aligned_cols=274  Identities=18%  Similarity=0.114  Sum_probs=246.9

Q ss_pred             CcccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHc
Q 041247            3 NILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQA   82 (507)
Q Consensus         3 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~   82 (507)
                      +|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|++. +.+++.+ |..|.||||+|+..
T Consensus        57 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~  134 (351)
T 3utm_A           57 RKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKH-GACVNAM-DLWQFTPLHEAASK  134 (351)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTCCCHHHHHHHT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHC-CCCCCCC-CCCCCCHHHHHHHc
Confidence            588999999999999999999999999999999999999999999999999988875 7888888 99999999999999


Q ss_pred             CCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHh
Q 041247           83 NCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHK  162 (507)
Q Consensus        83 g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  162 (507)
                      |+.+++++|+++  +++++..|..|.||+|+|+..+..+.+++...             .+++..++..++.+.++.++.
T Consensus       135 ~~~~~v~~Ll~~--g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~  199 (351)
T 3utm_A          135 NRVEVCSLLLSH--GADPTLVNCHGKSAVDMAPTPELRERLTYEFK-------------GHSLLQAAREADLAKVKKTLA  199 (351)
T ss_dssp             TCHHHHHHHHHT--TCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHH-------------HHHHHHHHHTTCHHHHHHHTT
T ss_pred             CCHHHHHHHHHc--CCCCccccCCCCcchHHHhhhhhHHHHHhhhc-------------ccHHHHHHHhccHHHHHHHHH
Confidence            999999999999  89999999999999999999888888887664             257888899999999999998


Q ss_pred             ccc-cccCCCChhhHHHHHHHc---CChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCccccccccccccccccchh
Q 041247          163 QTK-NSLTDDDCIELLVQLIET---GFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLG  238 (507)
Q Consensus       163 ~~~-~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~  238 (507)
                      ... ....+..|.||||.|+..   +..+++++|++. +.+++.+|.+|+||||+|+..|+                   
T Consensus       200 ~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~-------------------  259 (351)
T 3utm_A          200 LEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRK-GANVNEKNKDFMTPLHVAAERAH-------------------  259 (351)
T ss_dssp             TCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTC-------------------
T ss_pred             hhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHc-CCCcCCcCCCCCCHHHHHHHcCC-------------------
Confidence            877 556788899999999999   557899999988 67788999999999999999999                   


Q ss_pred             hhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCcccccccccCCCchHHHHHH
Q 041247          239 AEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIFHVAVL  318 (507)
Q Consensus       239 ~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~  318 (507)
                               .+++++|+++++ +++.    .+..  |+||||+|+++|+.+++++|+++|+++ +.+|..|+||+|+|  
T Consensus       260 ---------~~~v~~Ll~~ga-~~n~----~d~~--g~t~L~~A~~~~~~~~v~~Ll~~gad~-~~~~~~g~tal~~a--  320 (351)
T 3utm_A          260 ---------NDVMEVLHKHGA-KMNA----LDSL--GQTALHRAALAGHLQTCRLLLSYGSDP-SIISLQGFTAAQMG--  320 (351)
T ss_dssp             ---------HHHHHHHHHTTC-CTTC----CCTT--SCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHS--
T ss_pred             ---------HHHHHHHHHCCC-CCCC----cCCC--CCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCChhhhh--
Confidence                     999999999998 7765    3334  499999999999999999999999998 99999999999998  


Q ss_pred             hCchHHHHHHHhchhh
Q 041247          319 NRLEELFKFIYDAKSI  334 (507)
Q Consensus       319 ~~~~~iv~~Ll~~ga~  334 (507)
                        +.+++++|.+.+..
T Consensus       321 --~~~~~~~l~~~~~~  334 (351)
T 3utm_A          321 --NEAVQQILSESTPM  334 (351)
T ss_dssp             --CHHHHHHHHHC---
T ss_pred             --hHHHHHHHHhcccc
Confidence              67889999887654

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=6.4e-40  Score=307.52  Aligned_cols=211  Identities=13%  Similarity=0.131  Sum_probs=148.7

Q ss_pred             CHHHHHHHHHcCCchhhc-ccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHh
Q 041247           84 CIDFVKELLKMMSTEDLA-KKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHK  162 (507)
Q Consensus        84 ~~e~v~~Ll~~~~~~~~~-~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  162 (507)
                      +.+++++|++.  +.+++ ..|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++
T Consensus        35 ~~~~v~~Ll~~--g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  111 (253)
T 1yyh_A           35 APAVISDFIYQ--GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQILIR  111 (253)
T ss_dssp             -------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             ChHHHHHHHHc--cCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            66777777766  45543 34666777777777777777777777777665 6666677777777777777777777776


Q ss_pred             ccc--cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCccccccccccccccccchhhh
Q 041247          163 QTK--NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAE  240 (507)
Q Consensus       163 ~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (507)
                      .+.  .+..+.+|.||||.|+..|+.+++++|++. +.+++.+|..|+||||+|+..|+                     
T Consensus       112 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~~~---------------------  169 (253)
T 1yyh_A          112 NRATDLDARMHDGTTPLILAARLAVEGMLEDLINS-HADVNAVDDLGKSALHWAAAVNN---------------------  169 (253)
T ss_dssp             STTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHT-TCCTTCBCTTSCBHHHHHHHHTC---------------------
T ss_pred             cCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCC---------------------
Confidence            665  455666677777777777777777777775 55567778888888888888888                     


Q ss_pred             hhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCcccccccccCCCchHHHHHHhC
Q 041247          241 KEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIFHVAVLNR  320 (507)
Q Consensus       241 ~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~  320 (507)
                             .+++++|+++++ +++.    .+..  |.||||+|+++|+.+++++|+++|+++ +.+|..|+||+|+|+++|
T Consensus       170 -------~~~v~~Ll~~ga-~~~~----~~~~--g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~g  234 (253)
T 1yyh_A          170 -------VDAAVVLLKNGA-NKDM----QNNR--EETPLFLAAREGSYETAKVLLDHFANR-DITDHMDRLPRDIAQERM  234 (253)
T ss_dssp             -------HHHHHHHHHTTC-CTTC----CCTT--SCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTT
T ss_pred             -------HHHHHHHHHcCC-CCCC----cCCC--CCCHHHHHHHCCCHHHHHHHHHcCCCc-cccccCCCCHHHHHHHcC
Confidence                   888888888887 6664    3333  489999999999999999999999998 899999999999999999


Q ss_pred             chHHHHHHHhchhh
Q 041247          321 LEELFKFIYDAKSI  334 (507)
Q Consensus       321 ~~~iv~~Ll~~ga~  334 (507)
                      +.+++++|.+....
T Consensus       235 ~~~i~~~l~~~~~~  248 (253)
T 1yyh_A          235 HHDIVRLLDLEHHH  248 (253)
T ss_dssp             CHHHHHHHHC----
T ss_pred             CHHHHHHHHHHhhh
Confidence            99999999876543

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=4.5e-39  Score=299.19  Aligned_cols=226  Identities=16%  Similarity=0.138  Sum_probs=156.8

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHc---CCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHH
Q 041247           69 TNLGNTALHVAAQANCIDFVKELLKM---MSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPI  145 (507)
Q Consensus        69 ~~~g~t~Lh~Aa~~g~~e~v~~Ll~~---~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL  145 (507)
                      |.+|+||||+|++.|+.+++++|++.   . +.+++.+|..|.||||+|+..|+.+++++|++.|+++ +.+|..|.|||
T Consensus         6 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l   83 (241)
T 1k1a_A            6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQG-GRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTAA   83 (241)
T ss_dssp             -CTTCCHHHHHHHTTCHHHHHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHHHHhc-CCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHH
Confidence            55666666666666666666666651   1 4556666666666666666666666666666666664 55566666666


Q ss_pred             HHHHHcCcHHHHHHHHhccc-----cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcc-cCCchHHHHHHhcCC
Q 041247          146 VRAAALEQGQMVLLLHKQTK-----NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRA-ENEETALHVLARKDL  219 (507)
Q Consensus       146 ~~A~~~g~~~~v~~Ll~~~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d-~~g~t~Lh~A~~~~~  219 (507)
                      |+|+..|+.+++++|++.++     .+..+..|.||||.|+..|+.+++++|++. +.+++.++ ..|.||||+|+..++
T Consensus        84 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~~g~t~L~~A~~~~~  162 (241)
T 1k1a_A           84 HLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLER-GADIDAVDIKSGRSPLIHAVENNS  162 (241)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHc-CCCcccccccCCCcHHHHHHHcCC
Confidence            66666666666666666553     234555666666666666666666666666 34444555 678888888888888


Q ss_pred             ccccccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCc
Q 041247          220 TSTNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYA  299 (507)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~  299 (507)
                                                  .+++++|++++. +++.    .+..  |+||||+|++.|+.+++++|+++|+
T Consensus       163 ----------------------------~~~v~~Ll~~g~-~~~~----~~~~--g~t~L~~A~~~~~~~~v~~Ll~~ga  207 (241)
T 1k1a_A          163 ----------------------------LSMVQLLLQHGA-NVNA----QMYS--GSSALHSASGRGLLPLVRTLVRSGA  207 (241)
T ss_dssp             ----------------------------HHHHHHHHHTTC-CTTC----BCTT--SCBHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             ----------------------------HHHHHHHHHcCC-CCCC----cCCC--CCCHHHHHHHcCCHHHHHHHHhcCC
Confidence                                        888888888877 6654    2333  4899999999999999999999999


Q ss_pred             ccccccccCCCchHHHHHHhCchHHHHHHHhchh
Q 041247          300 DLMRKCDENGYTIFHVAVLNRLEELFKFIYDAKS  333 (507)
Q Consensus       300 ~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~ga  333 (507)
                      ++ +.+|..|+||||+|+..++.++++.|.+.++
T Consensus       208 ~~-~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~a  240 (241)
T 1k1a_A          208 DS-SLKNCHNDTPLMVARSRRVIDILRGKATRPA  240 (241)
T ss_dssp             CT-TCCCTTSCCTTTTCSSHHHHHHHTC------
T ss_pred             CC-CCcCCCCCCHHHHHHhcCcHHHHhhhccCCC
Confidence            98 8999999999999999999999999988764

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=5.5e-39  Score=301.16  Aligned_cols=229  Identities=21%  Similarity=0.159  Sum_probs=117.8

Q ss_pred             CccccCCHHhHHHHHcC-------------CHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCch
Q 041247           32 SEDSLRRLKLYRAALNG-------------DWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTE   98 (507)
Q Consensus        32 ~~~~~g~t~Lh~Aa~~g-------------~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~   98 (507)
                      .+|.+|+||||+|+..|             +.+++++|++. +.+++...|..|+||||+|+..|+.+++++|+++  ++
T Consensus         5 ~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~-g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~   81 (253)
T 1yyh_A            5 VRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQ-GASLHNQTDRTGETALHLAARYSRSDAAKRLLEA--SA   81 (253)
T ss_dssp             ------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHT--TC
T ss_pred             CCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHc-cCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc--CC
Confidence            34445555555555544             56666655544 3334333355666666666666666666666665  56


Q ss_pred             hhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc-cccCCCChhhHH
Q 041247           99 DLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK-NSLTDDDCIELL  177 (507)
Q Consensus        99 ~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L  177 (507)
                      +++.+|..|+||||+|+..|+.+++++|++.++...+.++..|.||||+|+..|+.+++++|++.+. .+..|.+|.|||
T Consensus        82 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L  161 (253)
T 1yyh_A           82 DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSAL  161 (253)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHH
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence            6666666666666666666666666666666552235556666666666666666666666666665 555566666666


Q ss_pred             HHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCccccccccccccccccchhhhhhhhHHHHHHHHHHHHH
Q 041247          178 VQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTE  257 (507)
Q Consensus       178 ~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~  257 (507)
                      |.|+..|+.+++++|++. +.+++.+|..|+||||+|+..|+                            .+++++|+++
T Consensus       162 ~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpL~~A~~~~~----------------------------~~~v~~Ll~~  212 (253)
T 1yyh_A          162 HWAAAVNNVDAAVVLLKN-GANKDMQNNREETPLFLAAREGS----------------------------YETAKVLLDH  212 (253)
T ss_dssp             HHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTC----------------------------HHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCC----------------------------HHHHHHHHHc
Confidence            666666666666666665 44455666666666666666666                            6666666666


Q ss_pred             HhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCc
Q 041247          258 VVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYA  299 (507)
Q Consensus       258 ~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~  299 (507)
                      ++ +++.    .+..  |+||||+|+++|+.+++++|.+..+
T Consensus       213 ga-~~~~----~d~~--g~tpl~~A~~~g~~~i~~~l~~~~~  247 (253)
T 1yyh_A          213 FA-NRDI----TDHM--DRLPRDIAQERMHHDIVRLLDLEHH  247 (253)
T ss_dssp             TC-CTTC----CCTT--CCCHHHHHHHTTCHHHHHHHHC---
T ss_pred             CC-Cccc----cccC--CCCHHHHHHHcCCHHHHHHHHHHhh
Confidence            65 4443    2222  3666666666666666666665433

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=2.1e-38  Score=292.84  Aligned_cols=227  Identities=19%  Similarity=0.166  Sum_probs=161.6

Q ss_pred             ccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHH
Q 041247           35 SLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYA  114 (507)
Q Consensus        35 ~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A  114 (507)
                      ..+.+|||.|+..|+.+.++++++..+..++.+ |..|+||||+|+..|+.+++++|+++  +.+++.+|..|+||||+|
T Consensus         4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A   80 (231)
T 3aji_A            4 CVSNIMICNLAYSGKLDELKERILADKSLATRT-DQDSRTALHWACSAGHTEIVEFLLQL--GVPVNDKDDAGWSPLHIA   80 (231)
T ss_dssp             CCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCC-CTTSCCHHHHHHHHTCHHHHHHHHHT--TCCSCCCCTTSCCHHHHH
T ss_pred             ccccchHHHHHHhCCHHHHHHHHHhchhhhhcC-CCCCCCHHHHHHHcCcHHHHHHHHHh--CCCCCCcCCCCCCHHHHH
Confidence            345666777777777777776666655555555 66667777777777777777777766  566666666677777777


Q ss_pred             HHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccccccCCCChhhHHHHHHHcCChHHHHHHHh
Q 041247          115 AASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTKNSLTDDDCIELLVQLIETGFYVVALQLLR  194 (507)
Q Consensus       115 ~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  194 (507)
                      +..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.+.                             
T Consensus        81 ~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~-----------------------------  130 (231)
T 3aji_A           81 ASAGXDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGA-----------------------------  130 (231)
T ss_dssp             HHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-----------------------------
T ss_pred             HHcCHHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-----------------------------
Confidence            7777777777777666665 5666666666666666666666666666544                             


Q ss_pred             cCchhhhhcccCCchHHHHHHhcCCccccccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcC
Q 041247          195 DRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIAR  274 (507)
Q Consensus       195 ~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~  274 (507)
                          +++.+|..|.||||+|+..|+                            .+++++|++++. +++.    .+..  
T Consensus       131 ----~~~~~~~~g~t~L~~A~~~~~----------------------------~~~v~~Ll~~g~-~~~~----~~~~--  171 (231)
T 3aji_A          131 ----NPDAKDHYDATAMHRAAAKGN----------------------------LKMVHILLFYKA-STNI----QDTE--  171 (231)
T ss_dssp             ----CTTCCCTTSCCHHHHHHHHTC----------------------------HHHHHHHHHTTC-CSCC----CCTT--
T ss_pred             ----CCCCcCCCCCcHHHHHHHcCC----------------------------HHHHHHHHhcCC-Cccc----cCCC--
Confidence                334455566677777776666                            667777776666 5554    2233  


Q ss_pred             CChHHHHHHHcCcHHHHHHHHHHCcccccccccCCCchHHHHHHhCchHHHHHHHhchhh
Q 041247          275 PTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIFHVAVLNRLEELFKFIYDAKSI  334 (507)
Q Consensus       275 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~ga~  334 (507)
                      |+||||+|++.|+.+++++|+++|+++ +.+|..|+||||+|++.++.+++++|.++|++
T Consensus       172 g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~  230 (231)
T 3aji_A          172 GNTPLHLACDEERVEEAKFLVTQGASI-YIENKEEKTPLQVAKGGLGLILKRLAEGEEAS  230 (231)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHhhHHHHHHHHHcccccc
Confidence            388888888888899999999999997 88899999999999999999999999998874

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=3.5e-38  Score=292.53  Aligned_cols=213  Identities=19%  Similarity=0.147  Sum_probs=202.4

Q ss_pred             CCcccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHH
Q 041247            2 DNILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQ   81 (507)
Q Consensus         2 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~   81 (507)
                      .+|.||||+|+..|+.+++++|+++|.+++..+..|.||||+|+..|+.+++++|++. +.+++.+ +..|.||||+|+.
T Consensus         9 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~   86 (237)
T 3b7b_A            9 QNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKA-GALVDPK-DAEGSTCLHLAAK   86 (237)
T ss_dssp             CCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCCCCC-CTTSCCHHHHHHH
T ss_pred             CCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhC-CCCCCCC-CCCCCcHHHHHHH
Confidence            4688999999999999999999999999999999999999999999999999988864 7888887 8999999999999


Q ss_pred             cCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHH
Q 041247           82 ANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLH  161 (507)
Q Consensus        82 ~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll  161 (507)
                      .|+.+++++|++++ +.+++..|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+
T Consensus        87 ~~~~~~~~~Ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll  164 (237)
T 3b7b_A           87 KGHYEVVQYLLSNG-QMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDI-NIRDNEENICLHWAAFSGCVDIAEILL  164 (237)
T ss_dssp             TTCHHHHHHHHTTT-CCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCHHHHHHHH
T ss_pred             cCCHHHHHHHHhCC-CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CccCCCCCCHHHHHHHCCCHHHHHHHH
Confidence            99999999999994 4889999999999999999999999999999999997 889999999999999999999999999


Q ss_pred             hccc-cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCC
Q 041247          162 KQTK-NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDL  219 (507)
Q Consensus       162 ~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~  219 (507)
                      +.++ .+..|..|.||||.|++.++.+++++|+++ +.+++.+|.+|+||||+|+..++
T Consensus       165 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~t~l~~A~~~~~  222 (237)
T 3b7b_A          165 AAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSR-DSDVTLKNKEGETPLQCASLNSQ  222 (237)
T ss_dssp             TTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCTTSCCHHHHSCTTCH
T ss_pred             HcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHc-CCCCCccCCCCCCHHHHHHHHHH
Confidence            9999 888999999999999999999999999998 67788999999999999999998

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1.1e-38  Score=303.78  Aligned_cols=253  Identities=15%  Similarity=0.041  Sum_probs=147.1

Q ss_pred             ccccCCHHhHHHHHcCCHHHHHHHHhhchhc---cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCc
Q 041247           33 EDSLRRLKLYRAALNGDWAVAKDIYDKYKVE---IGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCT  109 (507)
Q Consensus        33 ~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~---i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t  109 (507)
                      .|..|+||||+|+..|+.+++++|++. +.+   ++.+ |..|+||||+|+..|+.+++++|+++  |++++.+|..|+|
T Consensus         5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~g~t   80 (282)
T 1oy3_D            5 VTEDGDTALHLAVIHQHEPFLDFLLGF-SAGHEYLDLQ-NDLGQTALHLAAILGEASTVEKLYAA--GAGVLVAERGGHT   80 (282)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHH-HTTSGGGGCC-CTTSCCHHHHHHHHTCHHHHHHHHHT--TCCSSCCCTTSCC
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhc-CCCccccccc-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCC
Confidence            455566666666666666666655543 222   4444 55566666666666666666666665  5566666666666


Q ss_pred             HHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccccccCCCChhhHHHHHHHcCChHHH
Q 041247          110 AFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTKNSLTDDDCIELLVQLIETGFYVVA  189 (507)
Q Consensus       110 ~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v  189 (507)
                      |||+|+..|+.+++++|++++++... ....  +.  ..              .. .......+.++++.+...+.....
T Consensus        81 pL~~A~~~~~~~~v~~Ll~~~~~~~~-~~~~--~~--~~--------------~~-~~~~~~~~~~~~~~~~~~~~~~~~  140 (282)
T 1oy3_D           81 ALHLACRVRAHTCACVLLQPRPSHPR-DASD--TY--LT--------------QS-QDCTPDTSHAPAAVDSQPNPENEE  140 (282)
T ss_dssp             HHHHHTTTTCHHHHHHHSSSCCSSCC-CC---------------------------------------------------
T ss_pred             HHHHHHHcCCcchhHhhhccCCCCch-hhHH--HH--hh--------------cc-cccCcchhcchhhhccccccchhh
Confidence            66666666666666666665554311 0000  00  00              00 011223345566666655555444


Q ss_pred             HHHHhcCchhhhhcccCCchHHHHHHhcCCccccccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhccchhhHHh
Q 041247          190 LQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEIS  269 (507)
Q Consensus       190 ~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~  269 (507)
                      ...+...+..++.+|..|+||||+|+..|+                            .+++++|+++++ +++.    .
T Consensus       141 ~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~----------------------------~~~v~~Ll~~g~-~~~~----~  187 (282)
T 1oy3_D          141 EPRDEDWRLQLEAENYDGHTPLHVAVIHKD----------------------------AEMVRLLRDAGA-DLNK----P  187 (282)
T ss_dssp             ---CCCGGGGTTCCCTTSCCHHHHHHHTTC----------------------------HHHHHHHHHHTC-CTTC----C
T ss_pred             hhhhhhhhhcCCCcCCCCcCHHHHHHHcCC----------------------------HHHHHHHHHcCC-CCCC----C
Confidence            445545566677788888888888888888                            888888888887 6664    1


Q ss_pred             hhhcCCChHHHHHHHcCcHHHHHHHHHHCcccccccccCCCchHHHHHHhCchHHHHHHHhchhhhhhhhccccCCCCC
Q 041247          270 KLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIFHVAVLNRLEELFKFIYDAKSIADLMVDSNDGEGEM  348 (507)
Q Consensus       270 ~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~d~~g~t  348 (507)
                      + +..|+||||+|+++|+.+++++|+++|+++ +.+|..|+||||+|+++++.+++++|+++|+++    +.+|.+|.|
T Consensus       188 ~-~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~----~~~~~~g~t  260 (282)
T 1oy3_D          188 E-PTCGRTPLHLAVEAQAASVLELLLKAGADP-TARMYGGRTPLGSALLRPNPILARLLRAHGAPE----PEDGGDKLS  260 (282)
T ss_dssp             C-TTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCC----CCCC-----
T ss_pred             C-CCCCcCHHHHHHHcCCHHHHHHHHHcCCCC-cccccCCCCHHHHHHHcCCcHHHHHHHHcCCCc----CcCCCcccc
Confidence            1 112488888888888888888888888887 888888888888888888888888888888887    778888888

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=2.7e-38  Score=293.32  Aligned_cols=226  Identities=18%  Similarity=0.152  Sum_probs=178.3

Q ss_pred             cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCh
Q 041247           64 IGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTL  143 (507)
Q Consensus        64 i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~t  143 (507)
                      ++.+ |..|.||||+|+..|+.+++++|+++  +.+++..|..|.||||+|+..|+.+++++|+++|+++ +.++..|.|
T Consensus         4 ~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t   79 (237)
T 3b7b_A            4 FKME-HQNKRSPLHAAAEAGHVDICHMLVQA--GANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV-DPKDAEGST   79 (237)
T ss_dssp             CCCS-SCCSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCC-CCCCTTSCC
T ss_pred             cccc-cCCCCCHHHHHHHcCcHHHHHHHHHc--CCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCc
Confidence            4444 67777788888877777778777777  6777777777778888887777778888877777775 667777778


Q ss_pred             HHHHHHHcCcHHHHHHHHhccc--cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCcc
Q 041247          144 PIVRAAALEQGQMVLLLHKQTK--NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTS  221 (507)
Q Consensus       144 pL~~A~~~g~~~~v~~Ll~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~  221 (507)
                      |||+|+..|+.+++++|++.++  .+..+..|.||||.|+..++.+++++|++. +.+++.+|..|.||||+|+..|+  
T Consensus        80 ~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~--  156 (237)
T 3b7b_A           80 CLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK-GSDINIRDNEENICLHWAAFSGC--  156 (237)
T ss_dssp             HHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHCC--
T ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCccCCCCCCHHHHHHHCCC--
Confidence            8888887777788888777773  566777777888888888888888887776 55566778888888888888888  


Q ss_pred             ccccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCccc
Q 041247          222 TNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADL  301 (507)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~  301 (507)
                                                .+++++|++++. +++.    .+.  .|.||||+|++.|+.+++++|+++|+++
T Consensus       157 --------------------------~~~~~~Ll~~g~-~~~~----~~~--~g~t~L~~A~~~~~~~~v~~Ll~~gad~  203 (237)
T 3b7b_A          157 --------------------------VDIAEILLAAKC-DLHA----VNI--HGDSPLHIAARENRYDCVVLFLSRDSDV  203 (237)
T ss_dssp             --------------------------HHHHHHHHTTTC-CTTC----CCT--TCCCHHHHHHHTTCHHHHHHHHTTTCCT
T ss_pred             --------------------------HHHHHHHHHcCC-CCCC----cCC--CCCCHHHHHHHhCCHhHHHHHHHcCCCC
Confidence                                      888888888877 6654    233  3489999999999999999999999998


Q ss_pred             ccccccCCCchHHHHHHhCchHHHHHHHh
Q 041247          302 MRKCDENGYTIFHVAVLNRLEELFKFIYD  330 (507)
Q Consensus       302 ~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~  330 (507)
                       +.+|..|+||||+|+.+++.+.+..+++
T Consensus       204 -~~~d~~g~t~l~~A~~~~~~~~~~~l~~  231 (237)
T 3b7b_A          204 -TLKNKEGETPLQCASLNSQVWSALQMSK  231 (237)
T ss_dssp             -TCCCTTSCCHHHHSCTTCHHHHHHHHHH
T ss_pred             -CccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence             8999999999999999998866555543

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=1.4e-38  Score=295.86  Aligned_cols=224  Identities=20%  Similarity=0.179  Sum_probs=204.7

Q ss_pred             CCcccHHHHHHHcCCChhhHHHHh----CCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHH
Q 041247            2 DNILSGLGWVMTNGIKEAPRVLLS----NGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALH   77 (507)
Q Consensus         2 ~~g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh   77 (507)
                      ++|.||||+|+..|+.+++++|++    .|.+.+..|..|.||||+|+..|+.+++++|++. +.+++.+ |..|+||||
T Consensus         7 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~t~l~   84 (241)
T 1k1a_A            7 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA-GASPMAL-DRHGQTAAH   84 (241)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTSCCHHH
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHc-CCCcccc-CCCCCCHHH
Confidence            478999999999999999999997    7888888999999999999999999999988864 7888888 999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCch----hhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCC-CCCChHHHHHHHcC
Q 041247           78 VAAQANCIDFVKELLKMMSTE----DLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPD-MDGTLPIVRAAALE  152 (507)
Q Consensus        78 ~Aa~~g~~e~v~~Ll~~~~~~----~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~-~~g~tpL~~A~~~g  152 (507)
                      +|+..|+.+++++|++.  +.    +++..|..|.||||+|+..|+.+++++|++.|+++ +..+ ..|.||||+|+..|
T Consensus        85 ~A~~~~~~~~~~~Ll~~--~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~g~t~L~~A~~~~  161 (241)
T 1k1a_A           85 LACEHRSPTCLRALLDS--AAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADI-DAVDIKSGRSPLIHAVENN  161 (241)
T ss_dssp             HHHHTTCHHHHHHHHHH--SCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTTCCCHHHHHHHTT
T ss_pred             HHHHcCCHHHHHHHHHc--CCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCc-ccccccCCCcHHHHHHHcC
Confidence            99999999999999999  44    78899999999999999999999999999999997 6666 88999999999999


Q ss_pred             cHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCcccccccccccc
Q 041247          153 QGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFF  231 (507)
Q Consensus       153 ~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~  231 (507)
                      +.+++++|++.++ .+..|.+|.||||.|+..|+.+++++|++. +.+++.+|..|+||||+|+..++            
T Consensus       162 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~A~~~~~------------  228 (241)
T 1k1a_A          162 SLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRS-GADSSLKNCHNDTPLMVARSRRV------------  228 (241)
T ss_dssp             CHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCTTTTCSSHHH------------
T ss_pred             CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhc-CCCCCCcCCCCCCHHHHHHhcCc------------
Confidence            9999999999999 888999999999999999999999999998 67788999999999999999998            


Q ss_pred             ccccchhhhhhhhHHHHHHHHHHHHHHh
Q 041247          232 QRCFNLGAEKEENKQALELVESLWTEVV  259 (507)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~v~~Ll~~~~  259 (507)
                                      .++++.|.++++
T Consensus       229 ----------------~~i~~~l~~~~a  240 (241)
T 1k1a_A          229 ----------------IDILRGKATRPA  240 (241)
T ss_dssp             ----------------HHHHTC------
T ss_pred             ----------------HHHHhhhccCCC
Confidence                            899988887653

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=3e-38  Score=291.79  Aligned_cols=222  Identities=21%  Similarity=0.148  Sum_probs=204.4

Q ss_pred             cccHHHHHHHcCCChhhHHHHhCCCC-CCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHc
Q 041247            4 ILSGLGWVMTNGIKEAPRVLLSNGGA-NLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQA   82 (507)
Q Consensus         4 g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~   82 (507)
                      +.||||.|+..|+.+.++++++.+.. .+..|..|.||||+|+..|+.+++++|++. +.+++.+ |..|+||||+|+..
T Consensus         6 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~   83 (231)
T 3aji_A            6 SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDK-DDAGWSPLHIAASA   83 (231)
T ss_dssp             SSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSCCC-CTTSCCHHHHHHHH
T ss_pred             ccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHh-CCCCCCc-CCCCCCHHHHHHHc
Confidence            56999999999999999999998755 345688999999999999999999988875 7888888 99999999999999


Q ss_pred             CCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHh
Q 041247           83 NCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHK  162 (507)
Q Consensus        83 g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  162 (507)
                      |+.+++++|+++  +.+++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++
T Consensus        84 ~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  160 (231)
T 3aji_A           84 GXDEIVKALLVK--GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYDATAMHRAAAKGNLKMVHILLF  160 (231)
T ss_dssp             TCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence            999999999999  8999999999999999999999999999999999996 8899999999999999999999999999


Q ss_pred             ccc-cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCccccccccccccccccchhhhh
Q 041247          163 QTK-NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEK  241 (507)
Q Consensus       163 ~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (507)
                      .+. .+.+|..|.||||.|+..++.+++++|++. +.+++.+|..|+||||+|+..++                      
T Consensus       161 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~----------------------  217 (231)
T 3aji_A          161 YKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQ-GASIYIENKEEKTPLQVAKGGLG----------------------  217 (231)
T ss_dssp             TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHSCHHHH----------------------
T ss_pred             cCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHhhHH----------------------
Confidence            998 888889999999999999999999999988 66777889999999999988887                      


Q ss_pred             hhhHHHHHHHHHHHHHHh
Q 041247          242 EENKQALELVESLWTEVV  259 (507)
Q Consensus       242 ~~~~~~~~~v~~Ll~~~~  259 (507)
                            .+++++|.++++
T Consensus       218 ------~~i~~lL~~~~a  229 (231)
T 3aji_A          218 ------LILKRLAEGEEA  229 (231)
T ss_dssp             ------HHHHHHHHHHHH
T ss_pred             ------HHHHHHHccccc
Confidence                  888888888776

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=7.7e-38  Score=297.99  Aligned_cols=257  Identities=13%  Similarity=0.010  Sum_probs=168.1

Q ss_pred             CCcccHHHHHHHcCCChhhHHHHhCCCC---CCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHH
Q 041247            2 DNILSGLGWVMTNGIKEAPRVLLSNGGA---NLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHV   78 (507)
Q Consensus         2 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~   78 (507)
                      .+|.||||+|+..|+.+++++|+++|++   .+..|..|.||||+|+..|+.+++++|++. +++++.+ |..|+||||+
T Consensus         7 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~-~~~g~tpL~~   84 (282)
T 1oy3_D            7 EDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA-GAGVLVA-ERGGHTALHL   84 (282)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSSCC-CTTSCCHHHH
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCC-CCCCCCHHHH
Confidence            4789999999999999999999999987   567789999999999999999999988865 8899988 9999999999


Q ss_pred             HHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHH-
Q 041247           79 AAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMV-  157 (507)
Q Consensus        79 Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v-  157 (507)
                      |+..|+.+++++|+++  +.+.......  +                ++....   ......+.++++.++..+..... 
T Consensus        85 A~~~~~~~~v~~Ll~~--~~~~~~~~~~--~----------------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  141 (282)
T 1oy3_D           85 ACRVRAHTCACVLLQP--RPSHPRDASD--T----------------YLTQSQ---DCTPDTSHAPAAVDSQPNPENEEE  141 (282)
T ss_dssp             HTTTTCHHHHHHHSSS--CCSSCCCC------------------------------------------------------
T ss_pred             HHHcCCcchhHhhhcc--CCCCchhhHH--H----------------Hhhccc---ccCcchhcchhhhccccccchhhh
Confidence            9999999999999998  4432211100  0                000011   11122344555555444333222 


Q ss_pred             HHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhccc-CCchHHHHHHhcCCcccccccccccccccc
Q 041247          158 LLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAE-NEETALHVLARKDLTSTNQNRRGTFFQRCF  235 (507)
Q Consensus       158 ~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~-~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~  235 (507)
                      ..+...+. .+..+..|.||||.|+..|+.+++++|++. +.+++.++. .|+||||+|+..|+                
T Consensus       142 ~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~tpL~~A~~~~~----------------  204 (282)
T 1oy3_D          142 PRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDA-GADLNKPEPTCGRTPLHLAVEAQA----------------  204 (282)
T ss_dssp             --CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTTCCCHHHHHHHTTC----------------
T ss_pred             hhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcCHHHHHHHcCC----------------
Confidence            22222222 455666666666666666666777777666 344555554 48888888888888                


Q ss_pred             chhhhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCcccccccccCCCchHHH
Q 041247          236 NLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIFHV  315 (507)
Q Consensus       236 ~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~  315 (507)
                                  .+++++|+++++ +++.    .+..  |+||||+|+++|+.+++++|+++|+++ +.+|..|+||+++
T Consensus       205 ------------~~~v~~Ll~~ga-d~~~----~d~~--g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~  264 (282)
T 1oy3_D          205 ------------ASVLELLLKAGA-DPTA----RMYG--GRTPLGSALLRPNPILARLLRAHGAPE-PEDGGDKLSPCSS  264 (282)
T ss_dssp             ------------HHHHHHHHHTTC-CTTC----CCTT--SCCHHHHHHTSSCHHHHHHHHHTTCCC-CCCC---------
T ss_pred             ------------HHHHHHHHHcCC-CCcc----cccC--CCCHHHHHHHcCCcHHHHHHHHcCCCc-CcCCCcccccccc
Confidence                        888888888887 6665    3333  489999999999999999999999998 8999999999999


Q ss_pred             HHHhC
Q 041247          316 AVLNR  320 (507)
Q Consensus       316 A~~~~  320 (507)
                      |....
T Consensus       265 a~~~~  269 (282)
T 1oy3_D          265 SGSDS  269 (282)
T ss_dssp             -----
T ss_pred             cCCcc
Confidence            87644

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=1.9e-37  Score=295.70  Aligned_cols=216  Identities=15%  Similarity=0.058  Sum_probs=105.1

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHH
Q 041247           69 TNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRA  148 (507)
Q Consensus        69 ~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  148 (507)
                      |..|+||||+|+..|+.+++++|+++  +++++..|  |+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|
T Consensus        28 d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A  102 (285)
T 3kea_A           28 DVHGHSASYYAIADNNVRLVCTLLNA--GALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDD-SQFDDKGNTALYYA  102 (285)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHT--TGGGSCCT--TCCHHHHHTTSSSCHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhC--CCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHHHH
Confidence            44455555555555555555555544  44444442  445555555555555555555555443 44444455555555


Q ss_pred             HHcCcHHHHHHHHhccc-cccCCCCh-hhHHHHHHHcCChHHHHHHHhcCchhhhhccc-CCchHHHHHHhcCCcccccc
Q 041247          149 AALEQGQMVLLLHKQTK-NSLTDDDC-IELLVQLIETGFYVVALQLLRDRPRLATKRAE-NEETALHVLARKDLTSTNQN  225 (507)
Q Consensus       149 ~~~g~~~~v~~Ll~~~~-~~~~~~~g-~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~-~g~t~Lh~A~~~~~~~~~~~  225 (507)
                      +..|+.+++++|++.++ .+..+..| .||||.|+..|+.+++++|++..+..   .+. .|+||||+|+..|+      
T Consensus       103 ~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~g~t~L~~A~~~g~------  173 (285)
T 3kea_A          103 VDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST---FDLAILLSCIHITIKNGH------  173 (285)
T ss_dssp             HHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTT---CCCSTHHHHHHHHHHTTC------
T ss_pred             HHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcc---ccccCCccHHHHHHHcCh------
Confidence            55555555555555444 44444444 45555555555555555555443221   111 45555555555555      


Q ss_pred             ccccccccccchhhhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChH-HHHHHHcCcHHHHHHHHHHCcccccc
Q 041247          226 RRGTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRL-IFDAAKRGNVLFLLILIREYADLMRK  304 (507)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~-Lh~A~~~g~~~iv~~Ll~~~~~~~~~  304 (507)
                                            .+++++|+++++ +++.    .+..|  +|| ||+|+++|+.+++++|+++|+++ +.
T Consensus       174 ----------------------~~~v~~Ll~~ga-d~n~----~~~~g--~t~~L~~A~~~~~~~~v~~Ll~~gad~-~~  223 (285)
T 3kea_A          174 ----------------------VDMMILLLDYMT-STNT----NNSLL--FIPDIKLAIDNKDIEMLQALFKYDINI-YS  223 (285)
T ss_dssp             ----------------------HHHHHHHHHHHH-HTCT----TCCCB--CCTTHHHHHHHTCHHHHHHHTTSCBCS-TT
T ss_pred             ----------------------HHHHHHHHHcCC-CCCc----ccCCC--CChHHHHHHHcCCHHHHHHHHHcCCCC-CC
Confidence                                  555555555555 4433    12222  444 55555555555555555555554 44


Q ss_pred             cccCCCchHHHHHHhCchHHHHHHHhchhhh
Q 041247          305 CDENGYTIFHVAVLNRLEELFKFIYDAKSIA  335 (507)
Q Consensus       305 ~d~~g~t~L~~A~~~~~~~iv~~Ll~~ga~~  335 (507)
                      .|.       .|+..++.+++++|+++|++.
T Consensus       224 ~~~-------~a~~~~~~~iv~~Ll~~g~~~  247 (285)
T 3kea_A          224 ANL-------ENVLLDDAEIAKMIIEKHVEY  247 (285)
T ss_dssp             TTG-------GGGTTTCHHHHHHHHHHHHHH
T ss_pred             CCh-------hhhhcCCHHHHHHHHHcCCCC
Confidence            431       234455555555555555544

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=3.9e-38  Score=302.92  Aligned_cols=271  Identities=18%  Similarity=0.151  Sum_probs=224.3

Q ss_pred             HHHHcCCChhhHHHHhCCCCCCC---------ccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHH
Q 041247           10 WVMTNGIKEAPRVLLSNGGANLS---------EDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAA   80 (507)
Q Consensus        10 ~A~~~g~~~~v~~Ll~~g~~~~~---------~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa   80 (507)
                      .++..|..+.++.++........         .+..+.||||.|+..|+.+++++|++. +.+++.. |..|.||||+|+
T Consensus         4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~   81 (299)
T 1s70_B            4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLER-GADINYA-NVDGLTALHQAC   81 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHH-CCCTTCB-CTTCCBHHHHHH
T ss_pred             hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHc-CCCCccc-CCCCCCHHHHHH
Confidence            46777888888888876544322         245678999999999999999999976 6888888 999999999999


Q ss_pred             HcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHH
Q 041247           81 QANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLL  160 (507)
Q Consensus        81 ~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L  160 (507)
                      ..|+.+++++|+++  |++++.+|..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.++++.+
T Consensus        82 ~~g~~~~v~~Ll~~--ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~l  158 (299)
T 1s70_B           82 IDDNVDMVKFLVEN--GANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNE  158 (299)
T ss_dssp             HTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHC--CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHhcchHHHHHHH
Confidence            99999999999998  8999999999999999999999999999999999997 88999999999999999999999999


Q ss_pred             Hhccc--cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCccccccccccccccccchh
Q 041247          161 HKQTK--NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLG  238 (507)
Q Consensus       161 l~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~  238 (507)
                      +....  .+..+..+.++++        ..+..++..........+..|.||||+|+..|+                   
T Consensus       159 l~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~-------------------  211 (299)
T 1s70_B          159 VNRQGVDIEAARKEEERIML--------RDARQWLNSGHINDVRHAKSGGTALHVAAAKGY-------------------  211 (299)
T ss_dssp             HHHHTCCHHHHHHHHHHHHH--------HHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTC-------------------
T ss_pred             HhhcCCCchhhhhhhhhHHH--------HHHHHHHhccCcchhhhcCCCCCHHHHHHHCCc-------------------
Confidence            87654  2222233333333        234455666555555678899999999999999                   


Q ss_pred             hhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCcccccccccCCCchHHHHHH
Q 041247          239 AEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIFHVAVL  318 (507)
Q Consensus       239 ~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~  318 (507)
                               .+++++|+++++ +++.    .+..  |+||||+|+++|+.+++++|+++|+++ +.+|..|+||||+|.+
T Consensus       212 ---------~~~v~~Ll~~g~-d~~~----~d~~--g~tpL~~A~~~~~~~~v~~Ll~~gad~-~~~d~~g~t~l~~A~~  274 (299)
T 1s70_B          212 ---------TEVLKLLIQARY-DVNI----KDYD--GWTPLHAAAHWGKEEACRILVENLCDM-EAVNKVGQTAFDVADE  274 (299)
T ss_dssp             ---------HHHHHHHHTTTC-CTTC----CCTT--CCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCTTTSCCS
T ss_pred             ---------HHHHHHHHHcCC-CCCC----cCCC--CCcHHHHHHhcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHH
Confidence                     999999999888 7765    3334  499999999999999999999999998 9999999999999976


Q ss_pred             hCchHHHHHHHh
Q 041247          319 NRLEELFKFIYD  330 (507)
Q Consensus       319 ~~~~~iv~~Ll~  330 (507)
                      .. .+.++.+++
T Consensus       275 ~~-~~~l~~l~~  285 (299)
T 1s70_B          275 DI-LGYLEELQK  285 (299)
T ss_dssp             GG-GHHHHHHHH
T ss_pred             HH-HHHHHHHHH
Confidence            43 334444433

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=2.5e-37  Score=284.91  Aligned_cols=215  Identities=17%  Similarity=0.147  Sum_probs=195.4

Q ss_pred             cccHHHHHHHcCCChhhHHHHhCCCCCCC-ccccCCHHhHHHHHcCCHHHHHHHHhhc-hhccccccCCCCCcHHHHHHH
Q 041247            4 ILSGLGWVMTNGIKEAPRVLLSNGGANLS-EDSLRRLKLYRAALNGDWAVAKDIYDKY-KVEIGQEITNLGNTALHVAAQ   81 (507)
Q Consensus         4 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~-~~~i~~~~~~~g~t~Lh~Aa~   81 (507)
                      |.||||+|+..|+.+++++|++++.+... .|..|.||||+|+..|+.+++++|++.. ..+++...+..|+||||+|+.
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~   81 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   81 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence            68999999999999999999999987765 7999999999999999999999998763 255555238899999999999


Q ss_pred             cCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHH
Q 041247           82 ANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLH  161 (507)
Q Consensus        82 ~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll  161 (507)
                      .|+.+++++|++++.+.+++..|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+
T Consensus        82 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll  160 (228)
T 2dzn_A           82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLC  160 (228)
T ss_dssp             HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            9999999999998222889999999999999999999999999999999997 899999999999999999999999999


Q ss_pred             hcc-c-cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCC
Q 041247          162 KQT-K-NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDL  219 (507)
Q Consensus       162 ~~~-~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~  219 (507)
                      +.+ . .+..|.+|.||||.|+..|+.+++++|++..+.+++.+|.+|+||||+|+..+.
T Consensus       161 ~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~~~  220 (228)
T 2dzn_A          161 GLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQV  220 (228)
T ss_dssp             TTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSSTTH
T ss_pred             hcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHHHH
Confidence            999 5 788999999999999999999999999955578889999999999999976543

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=2.6e-37  Score=294.81  Aligned_cols=259  Identities=15%  Similarity=0.146  Sum_probs=219.7

Q ss_pred             HcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHH
Q 041247           13 TNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELL   92 (507)
Q Consensus        13 ~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll   92 (507)
                      ...+.+.++.++..+ +++.+|..|.||||+|+..|+.+++++|++. +.+++.+   +|+||||+|+..|+.+++++|+
T Consensus         8 ~~~~~~~v~~lL~~~-~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~---~g~t~L~~A~~~g~~~~v~~Ll   82 (285)
T 3kea_A            8 NTWKSKQLKSFLSSK-DTFKADVHGHSASYYAIADNNVRLVCTLLNA-GALKNLL---ENEFPLHQAATLEDTKIVKILL   82 (285)
T ss_dssp             GGCCHHHHHHHHHST-TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TGGGSCC---TTCCHHHHHTTSSSCHHHHHHH
T ss_pred             HhcCHHHHHHHHHhC-CCCccCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCC---CCCCHHHHHHHcCCHHHHHHHH
Confidence            344444454455444 5778899999999999999999999988876 7888776   4899999999999999999999


Q ss_pred             HcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCC-ChHHHHHHHcCcHHHHHHHHhccccccCCC
Q 041247           93 KMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDG-TLPIVRAAALEQGQMVLLLHKQTKNSLTDD  171 (507)
Q Consensus        93 ~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g-~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~  171 (507)
                      ++  |++++.+|..|+||||+|+..|+.+++++|+++|+++ +.++..| .||||+|+..|+.+++++|++.++......
T Consensus        83 ~~--ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~  159 (285)
T 3kea_A           83 FS--GLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLA  159 (285)
T ss_dssp             HT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGG-GGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCS
T ss_pred             HC--CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC-CccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccc
Confidence            99  8999999999999999999999999999999999997 8899999 899999999999999999999998332223


Q ss_pred             ChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchH-HHHHHhcCCccccccccccccccccchhhhhhhhHHHHHH
Q 041247          172 DCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETA-LHVLARKDLTSTNQNRRGTFFQRCFNLGAEKEENKQALEL  250 (507)
Q Consensus       172 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~-Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (507)
                      .|.||||.|+..|+.+++++|++. +.+++.+|..|+|| ||+|+..++                            .++
T Consensus       160 ~g~t~L~~A~~~g~~~~v~~Ll~~-gad~n~~~~~g~t~~L~~A~~~~~----------------------------~~~  210 (285)
T 3kea_A          160 ILLSCIHITIKNGHVDMMILLLDY-MTSTNTNNSLLFIPDIKLAIDNKD----------------------------IEM  210 (285)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHH-HHHTCTTCCCBCCTTHHHHHHHTC----------------------------HHH
T ss_pred             CCccHHHHHHHcChHHHHHHHHHc-CCCCCcccCCCCChHHHHHHHcCC----------------------------HHH
Confidence            899999999999999999999999 78889999999998 999999999                            999


Q ss_pred             HHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCcccccccccCCCchHHHHHHhCchHHH
Q 041247          251 VESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIFHVAVLNRLEELF  325 (507)
Q Consensus       251 v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~iv  325 (507)
                      +++|+++|+ +++..           .  +.|+..|+.+++++|+++|+++ ...+  ....+.+.......+++
T Consensus       211 v~~Ll~~ga-d~~~~-----------~--~~a~~~~~~~iv~~Ll~~g~~~-~~~~--~~~~~~~~~~~~~~~ii  268 (285)
T 3kea_A          211 LQALFKYDI-NIYSA-----------N--LENVLLDDAEIAKMIIEKHVEY-KSDS--YTKDLDIVKNNKLDEII  268 (285)
T ss_dssp             HHHHTTSCB-CSTTT-----------T--GGGGTTTCHHHHHHHHHHHHHH-TTCT--TTTTCHHHHTCSHHHHH
T ss_pred             HHHHHHcCC-CCCCC-----------C--hhhhhcCCHHHHHHHHHcCCCC-CCcc--ccchHHHHhhhhHHHHH
Confidence            999999998 77761           1  3567799999999999999987 3322  23345554444434443

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=7.4e-37  Score=283.75  Aligned_cols=230  Identities=16%  Similarity=0.137  Sum_probs=183.9

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHH
Q 041247           69 TNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRA  148 (507)
Q Consensus        69 ~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  148 (507)
                      |..|.||||.|++.|+.+++++|++.  +.+++.+|..|.||||+|+..|+.+++++|++.+++.....+..|.||||+|
T Consensus         6 d~~~~~~l~~A~~~g~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A   83 (240)
T 3eu9_A            6 DDYSTWDIVKATQYGIYERCRELVEA--GYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWA   83 (240)
T ss_dssp             SCGGGCCHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHH
T ss_pred             ccccchHHHHHHHcCChHHHHHHHHc--CCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHH
Confidence            66777888888888888888888887  6777777888888888888888888888888888776555566678888888


Q ss_pred             HHcCcHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCcccccccc
Q 041247          149 AALEQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRR  227 (507)
Q Consensus       149 ~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~  227 (507)
                      +..|+.+++++|++.+. .+..+..|.||||.|+..|+.+++++|++. +..++.+|..|.||||+|+..++.       
T Consensus        84 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~g~t~l~~a~~~~~~-------  155 (240)
T 3eu9_A           84 TRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK-GQDVDMMDQNGMTPLMWAAYRTHS-------  155 (240)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHCCS-------
T ss_pred             HHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhc-CCCccccCCCCCcHHHHHHHhCCh-------
Confidence            88888888888888777 667777788888888888888888888877 556677888888999988865540       


Q ss_pred             ccccccccchhhhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCccccccccc
Q 041247          228 GTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDE  307 (507)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~  307 (507)
                                          .+++++|++.+. +++.    .+. ..|.||||.|+++|+.+++++|+++|+++ +.+|.
T Consensus       156 --------------------~~~~~~L~~~~~-~~~~----~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~  208 (240)
T 3eu9_A          156 --------------------VDPTRLLLTFNV-SVNL----GDK-YHKNTALHWAVLAGNTTVISLLLEAGANV-DAQNI  208 (240)
T ss_dssp             --------------------STTHHHHHHTTC-CTTC----CCT-TTCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCBCT
T ss_pred             --------------------HHHHHHHHhcCC-Ccch----hhc-cCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCC
Confidence                                567788888777 6654    221 13489999999999999999999999998 89999


Q ss_pred             CCCchHHHHHHhCchHHHHHHHhchhhh
Q 041247          308 NGYTIFHVAVLNRLEELFKFIYDAKSIA  335 (507)
Q Consensus       308 ~g~t~L~~A~~~~~~~iv~~Ll~~ga~~  335 (507)
                      .|+||||+|++.++.+++++|++.|++.
T Consensus       209 ~g~t~l~~A~~~~~~~~v~~L~~~~~~~  236 (240)
T 3eu9_A          209 KGESALDLAKQRKNVWMINHLQEARQAK  236 (240)
T ss_dssp             TSCBHHHHHHHTTCHHHHHHHHHHC---
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHHhhhcc
Confidence            9999999999999999999999998865

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=8.8e-37  Score=281.27  Aligned_cols=220  Identities=18%  Similarity=0.184  Sum_probs=130.9

Q ss_pred             CCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcc-cccCCCcHHHHHH
Q 041247           37 RRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAK-KNKIGCTAFFYAA  115 (507)
Q Consensus        37 g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~-~d~~g~t~Lh~A~  115 (507)
                      |+||||.|+..|+.+++++++++.+...+.+ |..|+||||+|+..|+.+++++|++++...+++. .|..|.||||+|+
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~   80 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQK-DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC   80 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccC-CCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHH
Confidence            4555555555555555555555543333333 5555555555555555555555555521133333 4555555555555


Q ss_pred             HcCcHHHHHHHHhcC--CCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccccccCCCChhhHHHHHHHcCChHHHHHHH
Q 041247          116 ASGMVEIVEEMMKGN--KDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTKNSLTDDDCIELLVQLIETGFYVVALQLL  193 (507)
Q Consensus       116 ~~g~~~iv~~Ll~~~--~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  193 (507)
                      ..|+.+++++|++++  +++ +.++..|.||||+|+..|+.+++++|++.+.                            
T Consensus        81 ~~~~~~~~~~Ll~~g~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~----------------------------  131 (228)
T 2dzn_A           81 SVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLIENGA----------------------------  131 (228)
T ss_dssp             HHCCHHHHHHHHSSSSCCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC----------------------------
T ss_pred             HcCCHHHHHHHHhCCCCccc-ccCCcCCCCHHHHHHHcCCHhHHHHHHHcCC----------------------------
Confidence            555555555555555  443 4455555555555555555555555555544                            


Q ss_pred             hcCchhhhhcccCCchHHHHHHhcCCccccccccccccccccchhhhhhhhHHHHHHHHHHHHHH-hhccchhhHHhhhh
Q 041247          194 RDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTEV-VLSSESVSEISKLI  272 (507)
Q Consensus       194 ~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~-~~~~~~~~~~~~~~  272 (507)
                           +++.+|..|+||||+|+..|+                            .+++++|++++ . +++.    .+..
T Consensus       132 -----~~~~~~~~g~t~L~~A~~~~~----------------------------~~~v~~Ll~~g~~-~~~~----~d~~  173 (228)
T 2dzn_A          132 -----SVRIKDKFNQIPLHRAASVGS----------------------------LKLIELLCGLGKS-AVNW----QDKQ  173 (228)
T ss_dssp             -----CSCCCCTTSCCHHHHHHHTTC----------------------------HHHHHHHHTTTCC-CSCC----CCTT
T ss_pred             -----CccccCCCCCCHHHHHHHcCC----------------------------HHHHHHHHhcCcc-cccC----cCCC
Confidence                 344555556666666666665                            66666666555 3 4433    2233


Q ss_pred             cCCChHHHHHHHcCcHHHHHHHH-HHCcccccccccCCCchHHHHHHhCchHHHHHHHh
Q 041247          273 ARPTRLIFDAAKRGNVLFLLILI-REYADLMRKCDENGYTIFHVAVLNRLEELFKFIYD  330 (507)
Q Consensus       273 g~g~t~Lh~A~~~g~~~iv~~Ll-~~~~~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~  330 (507)
                        |+||||+|++.|+.+++++|+ +.|+++ +.+|..|+||+|+|++.   +++++|++
T Consensus       174 --g~t~L~~A~~~~~~~~v~~Ll~~~ga~~-~~~~~~g~t~l~~A~~~---~~~~~l~~  226 (228)
T 2dzn_A          174 --GWTPLFHALAEGHGDAAVLLVEKYGAEY-DLVDNKGAKAEDVALNE---QVKKFFLN  226 (228)
T ss_dssp             --SCCHHHHHHHTTCHHHHHHHHHHHCCCS-CCBCTTSCBGGGGCSST---THHHHHHT
T ss_pred             --CCCHHHHHHHcCCHHHHHHHHHhcCCCC-CccCCCCCcHHHHHHHH---HHHHHHHh
Confidence              378888888888888888888 788887 88899999999999654   56666665

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.2e-37  Score=293.91  Aligned_cols=210  Identities=17%  Similarity=0.162  Sum_probs=171.4

Q ss_pred             cccHHHHHHHcCCChhhHHHHhCCCCC--------CCccccCCHHhHHHHHcCCHH-HHHHHHhhchhccccccCCCCCc
Q 041247            4 ILSGLGWVMTNGIKEAPRVLLSNGGAN--------LSEDSLRRLKLYRAALNGDWA-VAKDIYDKYKVEIGQEITNLGNT   74 (507)
Q Consensus         4 g~t~L~~A~~~g~~~~v~~Ll~~g~~~--------~~~~~~g~t~Lh~Aa~~g~~~-~v~~ll~~~~~~i~~~~~~~g~t   74 (507)
                      +.+||+.|+..|+.++|++|+++|+..        ...+..+.||||.|+..++.+ +++.|+ +.+.+++.+ |.+|+|
T Consensus        11 ~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll-~~Gadvn~~-d~~G~T   88 (269)
T 4b93_B           11 EVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVP-ASGLGVNVT-SQDGSS   88 (269)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHTCC-----------------------------------------CCCCTTCC-CTTSCC
T ss_pred             chhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHH-HCCCCCCCc-CCCCCC
Confidence            458999999999999999999998754        234678999999999988865 566555 568999998 999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcH
Q 041247           75 ALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQG  154 (507)
Q Consensus        75 ~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~  154 (507)
                      |||+|+..|+.++|++|++.  +++++.++..|.||+|.|+..++.+++++|++.|+++ +.+|..|.||||+|+..|+.
T Consensus        89 pLh~A~~~g~~~~v~~Ll~~--~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-n~~d~~g~TpL~~A~~~g~~  165 (269)
T 4b93_B           89 PLHVAALHGRADLIPLLLKH--GANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKP-NKKDLSGNTPLIYACSGGHH  165 (269)
T ss_dssp             HHHHHHHTTCTTHHHHHHHT--TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCG
T ss_pred             HHHHHHHcCcHHHHHHHHhc--CCCcCccCCCCCCccccccccChHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCCH
Confidence            99999999999999999999  8999999999999999999999999999999999997 89999999999999999999


Q ss_pred             HHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCC
Q 041247          155 QMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDL  219 (507)
Q Consensus       155 ~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~  219 (507)
                      +++++|++.|+ ++..+..|.||||.|+..|+.++++.|++. +.+++.+|.+|+||||+|+++++
T Consensus       166 ~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~-Gad~~~~d~~G~TpL~~A~~~~~  230 (269)
T 4b93_B          166 ELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLH-GASVQVLNKRQRTAVDCAEQNSK  230 (269)
T ss_dssp             GGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHT-TCCSCCCCTTSCCSGGGSCTTCH
T ss_pred             HHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHhCCc
Confidence            99999999999 889999999999999999999999999998 67889999999999999988775

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=4e-36  Score=278.78  Aligned_cols=225  Identities=22%  Similarity=0.185  Sum_probs=207.8

Q ss_pred             CCcccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHH
Q 041247            2 DNILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQ   81 (507)
Q Consensus         2 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~   81 (507)
                      +.|.|||++|++.|+.+++++|+++|.+.+..+..|.||||.|+..|+.+++++|++. +.+++...+..|.||||+|+.
T Consensus         7 ~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~t~L~~A~~   85 (240)
T 3eu9_A            7 DYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISK-GAIVDQLGGDLNSTPLHWATR   85 (240)
T ss_dssp             CGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCBTTTTBCHHHHHHH
T ss_pred             cccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHc-CCcchhhcCCcCCChhHHHHH
Confidence            3578999999999999999999999999999999999999999999999999988876 556665546679999999999


Q ss_pred             cCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCc-HHHHHHH
Q 041247           82 ANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQ-GQMVLLL  160 (507)
Q Consensus        82 ~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~-~~~v~~L  160 (507)
                      .|+.+++++|++.  +++++.+|..|.||||+|+..|+.+++++|+++++++ +.++..|.||||+|+..++ .+++++|
T Consensus        86 ~~~~~~v~~Ll~~--g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~L  162 (240)
T 3eu9_A           86 QGHLSMVVQLMKY--GADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAAYRTHSVDPTRLL  162 (240)
T ss_dssp             HTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCSSTTHHHH
T ss_pred             cCCHHHHHHHHHc--CCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCc-cccCCCCCcHHHHHHHhCChHHHHHHH
Confidence            9999999999999  8999999999999999999999999999999999997 8899999999999997766 8999999


Q ss_pred             Hhccc-cccCCC-ChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCccccccccccccccccchh
Q 041247          161 HKQTK-NSLTDD-DCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLG  238 (507)
Q Consensus       161 l~~~~-~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~  238 (507)
                      ++.+. .+..+. .|.||||.|+..|+.+++++|++. +.+++.+|..|+||||+|++.++                   
T Consensus       163 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~-------------------  222 (240)
T 3eu9_A          163 LTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEA-GANVDAQNIKGESALDLAKQRKN-------------------  222 (240)
T ss_dssp             HHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCBCTTSCBHHHHHHHTTC-------------------
T ss_pred             HhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCc-------------------
Confidence            99998 676665 899999999999999999999999 67788999999999999999999                   


Q ss_pred             hhhhhhHHHHHHHHHHHHHHh
Q 041247          239 AEKEENKQALELVESLWTEVV  259 (507)
Q Consensus       239 ~~~~~~~~~~~~v~~Ll~~~~  259 (507)
                               .+++++|++.+.
T Consensus       223 ---------~~~v~~L~~~~~  234 (240)
T 3eu9_A          223 ---------VWMINHLQEARQ  234 (240)
T ss_dssp             ---------HHHHHHHHHHC-
T ss_pred             ---------HHHHHHHHHhhh
Confidence                     999999998876

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=2e-37  Score=292.53  Aligned_cols=230  Identities=16%  Similarity=0.135  Sum_probs=115.0

Q ss_pred             ccccCCHHhHHHHHcCCHHHHHHHHhhchhc-------cccccCCCCCcHHHHHHHcCCH-HHHHHHHHcCCchhhcccc
Q 041247           33 EDSLRRLKLYRAALNGDWAVAKDIYDKYKVE-------IGQEITNLGNTALHVAAQANCI-DFVKELLKMMSTEDLAKKN  104 (507)
Q Consensus        33 ~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~-------i~~~~~~~g~t~Lh~Aa~~g~~-e~v~~Ll~~~~~~~~~~~d  104 (507)
                      +|..+.++|+.|+..|+.+++++||+....+       ++.. +..|.||||.|+..++. ++++.|++.  |+++|.+|
T Consensus         7 kd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~-~~~~~t~L~~a~~~~~~~~~v~~Ll~~--Gadvn~~d   83 (269)
T 4b93_B            7 KDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAA-DPEFCHPLCQCPKCAPAQKRLAKVPAS--GLGVNVTS   83 (269)
T ss_dssp             CCCHHHHHHHHHHHTTCHHHHHHHHTCC-----------------------------------------C--CCCTTCCC
T ss_pred             cCccchhHHHHHHHcCCHHHHHHHHHCCCccccccccccccc-CccCCCHHHHHHHhCCHHHHHHHHHHC--CCCCCCcC
Confidence            3555566666666666666666666542211       2223 45556666666655543 355666655  56666666


Q ss_pred             cCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccccccCCCChhhHHHHHHHcC
Q 041247          105 KIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTKNSLTDDDCIELLVQLIETG  184 (507)
Q Consensus       105 ~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~A~~~~  184 (507)
                      .+|+||||+|+..|+.+++++|++.++++ +.++..|.||++.|+..++.+++++|++.++                   
T Consensus        84 ~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~-------------------  143 (269)
T 4b93_B           84 QDGSSPLHVAALHGRADLIPLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLDSNA-------------------  143 (269)
T ss_dssp             TTSCCHHHHHHHTTCTTHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC-------------------
T ss_pred             CCCCCHHHHHHHcCcHHHHHHHHhcCCCc-CccCCCCCCccccccccChHHHHHHHHHCCC-------------------
Confidence            66666666666666666666666666664 5556666666666666666666666665554                   


Q ss_pred             ChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCccccccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhccch
Q 041247          185 FYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSES  264 (507)
Q Consensus       185 ~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~  264 (507)
                                    +++.+|..|+||||+|+..|+                            .+++++|+++++ +++.
T Consensus       144 --------------~~n~~d~~g~TpL~~A~~~g~----------------------------~~~v~~Ll~~ga-dvn~  180 (269)
T 4b93_B          144 --------------KPNKKDLSGNTPLIYACSGGH----------------------------HELVALLLQHGA-SINA  180 (269)
T ss_dssp             --------------CSCCCCTTCCCHHHHHHHTTC----------------------------GGGHHHHHHTTC-CTTC
T ss_pred             --------------CCCCCCCCCCCHHHHHHHCCC----------------------------HHHHHHHHHCCC-CCCc
Confidence                          334445555555555555555                            555555555555 4443


Q ss_pred             hhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCcccccccccCCCchHHHHHHhCc-hHHHHHHHhchhhh
Q 041247          265 VSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIFHVAVLNRL-EELFKFIYDAKSIA  335 (507)
Q Consensus       265 ~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~-~~iv~~Ll~~ga~~  335 (507)
                          .+..  |+||||+|+++|+.++|++|+++|+|+ +.+|..|+||||+|+++++ .++++.|...++..
T Consensus       181 ----~~~~--g~t~Lh~A~~~g~~~~v~~Ll~~Gad~-~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~~~~  245 (269)
T 4b93_B          181 ----SNNK--GNTALHEAVIEKHVFVVELLLLHGASV-QVLNKRQRTAVDCAEQNSKIMELLQVVPSCVASL  245 (269)
T ss_dssp             ----BCTT--SCBHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCSGGGSCTTCHHHHHTTC--------
T ss_pred             ----cccC--CCcHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHhCCcHHHHHHHHHHhchhh
Confidence                2222  266666666666777777777777776 6777777777777766654 23444444444433

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=7.3e-36  Score=274.19  Aligned_cols=213  Identities=18%  Similarity=0.183  Sum_probs=196.9

Q ss_pred             cCCChhhHHHHhCCCCCCCc-cccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHH
Q 041247           14 NGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELL   92 (507)
Q Consensus        14 ~g~~~~v~~Ll~~g~~~~~~-~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll   92 (507)
                      .|+.+++++|+++|.+.+.. |..|.||||+|+..|+.+++++|++. +.+++.+ |..|+||||+|+..|+.+++++|+
T Consensus         1 gg~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll   78 (223)
T 2f8y_A            1 GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA-SADANIQ-DNMGRTPLHAAVSADAQGVFQILI   78 (223)
T ss_dssp             ----CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CCcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHc-CCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHH
Confidence            37899999999999988765 88999999999999999999988875 7888887 999999999999999999999999


Q ss_pred             HcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc-cccCCC
Q 041247           93 KMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK-NSLTDD  171 (507)
Q Consensus        93 ~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~  171 (507)
                      ++. +.+++..|..|.||||+|+..|+.+++++|+++++++ +.+|..|.||||+|+..|+.+++++|++.++ .+..|.
T Consensus        79 ~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  156 (223)
T 2f8y_A           79 RNR-ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNN  156 (223)
T ss_dssp             HBT-TSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HcC-CCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCC-cCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCC
Confidence            994 4489999999999999999999999999999999997 8899999999999999999999999999998 888999


Q ss_pred             ChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCccccccccccccccccchhhhhhhhHHHHHHH
Q 041247          172 DCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKEENKQALELV  251 (507)
Q Consensus       172 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  251 (507)
                      .|.||||.|++.|+.+++++|++. +.+++.+|..|.||||+|++.++                            .+++
T Consensus       157 ~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~----------------------------~~i~  207 (223)
T 2f8y_A          157 REETPLFLAAREGSYETAKVLLDH-FANRDITDHMDRLPRDIAQERMH----------------------------HDIV  207 (223)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTC----------------------------HHHH
T ss_pred             CCcCHHHHHHHcCCHHHHHHHHHc-CCCCccccccCCCHHHHHHHhcc----------------------------hHHH
Confidence            999999999999999999999998 66778899999999999999999                            9999


Q ss_pred             HHHHHHHh
Q 041247          252 ESLWTEVV  259 (507)
Q Consensus       252 ~~Ll~~~~  259 (507)
                      ++|++++.
T Consensus       208 ~~L~~~g~  215 (223)
T 2f8y_A          208 RLLDEYNL  215 (223)
T ss_dssp             HHHHHTTC
T ss_pred             HHHHHcCC
Confidence            99999886

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=3.3e-36  Score=289.37  Aligned_cols=257  Identities=17%  Similarity=0.112  Sum_probs=215.2

Q ss_pred             HHHHcCCHHHHHHHHhhchhcccc--------ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHH
Q 041247           43 RAALNGDWAVAKDIYDKYKVEIGQ--------EITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYA  114 (507)
Q Consensus        43 ~Aa~~g~~~~v~~ll~~~~~~i~~--------~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A  114 (507)
                      .++..++.+.++.++..... +..        ..+..|.||||.|+..|+.++|++|+++  +++++..|..|.||||+|
T Consensus         4 ~~a~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A   80 (299)
T 1s70_B            4 ADAKQKRNEQLKRWIGSETD-LEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLER--GADINYANVDGLTALHQA   80 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTTTS-SCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHH--CCCTTCBCTTCCBHHHHH
T ss_pred             hHHHHHHHHHHHHHHccccc-cccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHc--CCCCcccCCCCCCHHHHH
Confidence            46777788888878865321 111        1234678999999999999999999999  899999999999999999


Q ss_pred             HHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHHH
Q 041247          115 AASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLL  193 (507)
Q Consensus       115 ~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  193 (507)
                      +..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.++ .+..+.+|.||||.|+..++.++++.++
T Consensus        81 ~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll  159 (299)
T 1s70_B           81 CIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEV  159 (299)
T ss_dssp             HHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHH
Confidence            9999999999999999997 8899999999999999999999999999998 8889999999999999999999999999


Q ss_pred             hcCchhhhhcccCCchHHHHHHhcCCccccccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhc
Q 041247          194 RDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIA  273 (507)
Q Consensus       194 ~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g  273 (507)
                      ...+...+..+..+.+++                                    .+.+..++..+. ..+.     ..+.
T Consensus       160 ~~~~~~~~~~~~~~~~~~------------------------------------~~~~~~~l~~~~-~~~~-----~~~~  197 (299)
T 1s70_B          160 NRQGVDIEAARKEEERIM------------------------------------LRDARQWLNSGH-INDV-----RHAK  197 (299)
T ss_dssp             HHHTCCHHHHHHHHHHHH------------------------------------HHHHHHHHHHTC-CCCC-----CCTT
T ss_pred             hhcCCCchhhhhhhhhHH------------------------------------HHHHHHHHhccC-cchh-----hhcC
Confidence            875555544444433333                                    233344444443 2221     1223


Q ss_pred             CCChHHHHHHHcCcHHHHHHHHHHCcccccccccCCCchHHHHHHhCchHHHHHHHhchhhhhhhhccccCCCCCcC
Q 041247          274 RPTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIFHVAVLNRLEELFKFIYDAKSIADLMVDSNDGEGEMFD  350 (507)
Q Consensus       274 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~d~~g~t~~  350 (507)
                      .|.||||.|+.+|+.+++++|+++|+++ +.+|..|+||||+|+.+|+.+++++|+++|+++    +.+|..|+|.+
T Consensus       198 ~g~t~L~~A~~~g~~~~v~~Ll~~g~d~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~----~~~d~~g~t~l  269 (299)
T 1s70_B          198 SGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEACRILVENLCDM----EAVNKVGQTAF  269 (299)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT----TCCCTTSCCTT
T ss_pred             CCCCHHHHHHHCCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCC----CCcCCCCCCHH
Confidence            4499999999999999999999999998 999999999999999999999999999999998    88999999943

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=5.9e-36  Score=274.80  Aligned_cols=216  Identities=19%  Similarity=0.200  Sum_probs=151.5

Q ss_pred             CCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHH
Q 041247           48 GDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMM  127 (507)
Q Consensus        48 g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll  127 (507)
                      |+.+++++|+++ +.+++...|..|+||||+|+..|+.+++++|+++  +++++.+|..|+||||+|+..|+.+++++|+
T Consensus         2 g~~~~i~~Ll~~-g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll   78 (223)
T 2f8y_A            2 DAPAVISDFIYQ-GASLHNQTDRTGETALHLAARYSRSDAAKRLLEA--SADANIQDNMGRTPLHAAVSADAQGVFQILI   78 (223)
T ss_dssp             ---CCEETTEET-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CcHHHHHHHHHc-CCCcccccCCCCCchHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            455666655544 4555544466777777777777777777777776  6677777777777777777777777777777


Q ss_pred             hcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccccccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCC
Q 041247          128 KGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTKNSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENE  207 (507)
Q Consensus       128 ~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g  207 (507)
                      +.++...+.++..|.||||+|+..|+.+++++|++.+.                                 +++.+|..|
T Consensus        79 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~---------------------------------~~~~~~~~g  125 (223)
T 2f8y_A           79 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA---------------------------------DVNAVDDLG  125 (223)
T ss_dssp             HBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC---------------------------------CTTCBCTTS
T ss_pred             HcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCC---------------------------------CCcCcCCCC
Confidence            77663346666777777777777777777776666554                                 234455566


Q ss_pred             chHHHHHHhcCCccccccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCc
Q 041247          208 ETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGN  287 (507)
Q Consensus       208 ~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~  287 (507)
                      +||||+|+..++                            .+++++|++++. +++.    .+.  .|.||||+|+++|+
T Consensus       126 ~t~L~~A~~~~~----------------------------~~~v~~Ll~~g~-~~~~----~~~--~g~t~L~~A~~~~~  170 (223)
T 2f8y_A          126 KSALHWAAAVNN----------------------------VDAAVVLLKNGA-NKDM----QNN--REETPLFLAAREGS  170 (223)
T ss_dssp             CBHHHHHHHTTC----------------------------HHHHHHHHHTTC-CTTC----CCT--TCCCHHHHHHHHTC
T ss_pred             CcHHHHHHHcCC----------------------------HHHHHHHHHcCC-CCCC----cCC--CCcCHHHHHHHcCC
Confidence            666666666666                            666666666665 5543    222  33788888888888


Q ss_pred             HHHHHHHHHHCcccccccccCCCchHHHHHHhCchHHHHHHHhchhhh
Q 041247          288 VLFLLILIREYADLMRKCDENGYTIFHVAVLNRLEELFKFIYDAKSIA  335 (507)
Q Consensus       288 ~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~ga~~  335 (507)
                      .+++++|+++|+++ +.+|..|+||+|+|+++++.+++++|+++|+..
T Consensus       171 ~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~  217 (223)
T 2f8y_A          171 YETAKVLLDHFANR-DITDHMDRLPRDIAQERMHHDIVRLLDEYNLVR  217 (223)
T ss_dssp             HHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSS
T ss_pred             HHHHHHHHHcCCCC-ccccccCCCHHHHHHHhcchHHHHHHHHcCCCc
Confidence            88888888888887 888888999999999999999999999888764

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=3.7e-37  Score=299.63  Aligned_cols=254  Identities=12%  Similarity=0.035  Sum_probs=183.5

Q ss_pred             HcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccc----------------cCCCCCcHH
Q 041247           13 TNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQE----------------ITNLGNTAL   76 (507)
Q Consensus        13 ~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~----------------~~~~g~t~L   76 (507)
                      .....+++++|+++|++.+..+..|.++++     |+.++++.|+++ +.+.+..                ......+.+
T Consensus        28 ~~~~~dlv~~ll~~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~-g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  101 (327)
T 1sw6_A           28 ITFTHDLTSDFLSSPLKIMKALPSPVVNDN-----EQKMKLEAFLQR-LLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQ  101 (327)
T ss_dssp             EECCTTCCCSTTTSSCCCEECBCCCCCCCH-----HHHHHHHHHHHH-HHC-----------------------------
T ss_pred             hhhcCchHHHHhhCCcccccCCCCCCcccC-----chhHHHHHHHHh-ccCCccccchHhhhcccccccccccCCccchh
Confidence            346678999999999999999999999988     999999999976 4443320                011122345


Q ss_pred             HHHHHcCCHHHHHHHHHcCCchhhcc-cccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCc--
Q 041247           77 HVAAQANCIDFVKELLKMMSTEDLAK-KNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQ--  153 (507)
Q Consensus        77 h~Aa~~g~~e~v~~Ll~~~~~~~~~~-~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~--  153 (507)
                      |+|+..+..++++.|++.  +++++. +|..|+||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+..|+  
T Consensus       102 ~~a~~~~~~~~~~~l~~~--g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~~d~~g~TpLh~A~~~g~~~  178 (327)
T 1sw6_A          102 HVSFDSLLQEVNDAFPNT--QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNY  178 (327)
T ss_dssp             --CHHHHHHHHHHHCTTS--CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHH
T ss_pred             HHHHHhhHHHHHHHHHhc--CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhcccc
Confidence            888888889999999988  899999 8999999999999999999999999999997 8999999999999999998  


Q ss_pred             -HHHHHHHHhccc--cccCCCChhhHHHHHHH----cCChHHHHHHHhcC-------------------chhhhhcccCC
Q 041247          154 -GQMVLLLHKQTK--NSLTDDDCIELLVQLIE----TGFYVVALQLLRDR-------------------PRLATKRAENE  207 (507)
Q Consensus       154 -~~~v~~Ll~~~~--~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~~-------------------~~~~~~~d~~g  207 (507)
                       .++++.|++.+.  .+..|.+|.||||.|+.    .|+.++++.|++..                   +.+++.+|..|
T Consensus       179 ~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g  258 (327)
T 1sw6_A          179 DSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGER  258 (327)
T ss_dssp             HTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC---------------
T ss_pred             cHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccC
Confidence             788888888873  78899999999999999    89999999999873                   34455566666


Q ss_pred             chHHHHHHhcCCccccccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCc
Q 041247          208 ETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGN  287 (507)
Q Consensus       208 ~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~  287 (507)
                      +||||.|+.                                  +++|+++..   +    ..+.+|  +||||+|+++|+
T Consensus       259 ~t~L~~a~~----------------------------------~~~Ll~~~~---n----~~d~~G--~TpLh~A~~~g~  295 (327)
T 1sw6_A          259 KDSILENLD----------------------------------LKWIIANML---N----AQDSNG--DTCLNIAARLGN  295 (327)
T ss_dssp             -CHHHHHCS----------------------------------HHHHHHHTT---T----CCCTTS--CCHHHHHHHHCC
T ss_pred             CChhHHHHH----------------------------------HHHHHHhCC---C----CCCCCC--CCHHHHHHHcCC
Confidence            666666542                                  233443321   1    122333  666666666666


Q ss_pred             HHHHHHHHHHCcccccccccCCCchHHHHHHh
Q 041247          288 VLFLLILIREYADLMRKCDENGYTIFHVAVLN  319 (507)
Q Consensus       288 ~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~  319 (507)
                      .++|++|+++|+++ +.+|..|+||||+|+++
T Consensus       296 ~~~v~~Ll~~Gad~-~~~d~~G~TpL~~A~~~  326 (327)
T 1sw6_A          296 ISIVDALLDYGADP-FIANKSGLRPVDFGAGL  326 (327)
T ss_dssp             HHHHHHHHHTTCCT-TCCCTTSCCGGGGTCC-
T ss_pred             HHHHHHHHHcCCCC-cccCCCCCCHHHHHHhc
Confidence            66666666666665 66666666666666544

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=4.8e-34  Score=263.79  Aligned_cols=189  Identities=21%  Similarity=0.184  Sum_probs=174.6

Q ss_pred             CcccHHHHHHHcCCChhhHHHHhC-CCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhcc-----ccccCCCCCcHH
Q 041247            3 NILSGLGWVMTNGIKEAPRVLLSN-GGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEI-----GQEITNLGNTAL   76 (507)
Q Consensus         3 ~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i-----~~~~~~~g~t~L   76 (507)
                      .|+||||+|+..|+.+++++|+++ |.+++..|..|+||||+|+..|+.+++++|++.. .++     +.+ |..|+|||
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~~~-~~~g~t~L   79 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAA-PELVFEPMTSE-LYEGQTAL   79 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHC-GGGGGCCCCST-TTTTCCHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcC-chhcccccccc-CCCCcCHH
Confidence            489999999999999999999998 8888999999999999999999999999999864 443     444 77899999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCchhhccccc-------------CCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCCh
Q 041247           77 HVAAQANCIDFVKELLKMMSTEDLAKKNK-------------IGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTL  143 (507)
Q Consensus        77 h~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~-------------~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~t  143 (507)
                      |+|+..|+.+++++|+++  +++++.++.             .|+||||+|+..|+.+++++|+++|+++ +.+|..|.|
T Consensus        80 ~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t  156 (232)
T 2rfa_A           80 HIAVINQNVNLVRALLAR--GASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADI-RAQDSLGNT  156 (232)
T ss_dssp             HHHHHTTCHHHHHHHHHT--TCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCC
T ss_pred             HHHHHcCCHHHHHHHHhC--CCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCC
Confidence            999999999999999999  788887765             7999999999999999999999999997 899999999


Q ss_pred             HHHHHHHcCcHHHH----HHHHhccc-c------ccCCCChhhHHHHHHHcCChHHHHHHHhcC
Q 041247          144 PIVRAAALEQGQMV----LLLHKQTK-N------SLTDDDCIELLVQLIETGFYVVALQLLRDR  196 (507)
Q Consensus       144 pL~~A~~~g~~~~v----~~Ll~~~~-~------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~  196 (507)
                      |||+|+..|+.+++    ++|++.++ .      +..|..|.||||.|++.|+.+++++|+++.
T Consensus       157 ~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g  220 (232)
T 2rfa_A          157 VLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKR  220 (232)
T ss_dssp             HHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            99999999999988    99999998 4      578999999999999999999999999984

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=8.1e-35  Score=269.76  Aligned_cols=215  Identities=17%  Similarity=0.097  Sum_probs=186.4

Q ss_pred             CCcccHHHHHHHcCCChhhHHHHhCCC----CCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHH
Q 041247            2 DNILSGLGWVMTNGIKEAPRVLLSNGG----ANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALH   77 (507)
Q Consensus         2 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~----~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh   77 (507)
                      .+|.||||+|+..|+.+++++|++.+.    +.+..|..|.||||+|+..|+.+++++|++ .+.+++.+ |..|+||||
T Consensus         6 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-~~~g~t~L~   83 (236)
T 1ikn_D            6 EDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG-AGCDPELR-DFRGNTPLH   83 (236)
T ss_dssp             -CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCS-CCCCSCCC-CTTCCCHHH
T ss_pred             CCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCc-CCCCCCHHH
Confidence            478999999999999999999999876    467788999999999999999999998876 57888888 999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCC----chhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCC-CCChHHHHHHHcC
Q 041247           78 VAAQANCIDFVKELLKMMS----TEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDM-DGTLPIVRAAALE  152 (507)
Q Consensus        78 ~Aa~~g~~e~v~~Ll~~~~----~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~-~g~tpL~~A~~~g  152 (507)
                      +|+..|+.+++++|++.+.    ...++..|..|.||||+|+..|+.+++++|+++|+++ +.++. .|.||||+|+..|
T Consensus        84 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~~~~  162 (236)
T 1ikn_D           84 LACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADV-NAQEPCNGRTALHLAVDLQ  162 (236)
T ss_dssp             HHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTT
T ss_pred             HHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCCHHHHHHHcC
Confidence            9999999999999999841    1226788999999999999999999999999999997 77776 9999999999999


Q ss_pred             cHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhh-hhcccCCchHHHHHHhcCC
Q 041247          153 QGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLA-TKRAENEETALHVLARKDL  219 (507)
Q Consensus       153 ~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~d~~g~t~Lh~A~~~~~  219 (507)
                      +.+++++|++.|+ .+..|..|.||||.|+..|+.+++++|++...... ..++..|.||.+.+.....
T Consensus       163 ~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~  231 (236)
T 1ikn_D          163 NPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTE  231 (236)
T ss_dssp             CHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC-----
T ss_pred             CHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhhccccc
Confidence            9999999999999 88999999999999999999999999999854322 3678889998877655443

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=5.3e-33  Score=250.72  Aligned_cols=190  Identities=19%  Similarity=0.233  Sum_probs=177.8

Q ss_pred             CCcccHHHHHHHcCCChhhHHHHhCCC-CCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHH
Q 041247            2 DNILSGLGWVMTNGIKEAPRVLLSNGG-ANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAA   80 (507)
Q Consensus         2 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa   80 (507)
                      +.+.||||.|+..|+.+.++.|++++. +++..|..|.||||+|+..|+.+++++|++. +.+++.+ |..|+||||+|+
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~t~l~~A~   80 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDR-GADINLQ-NSISDSPYLYAG   80 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHH
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCC-CCCCCCHHHHHH
Confidence            357799999999999999999999987 7778899999999999999999999988865 8888888 999999999999


Q ss_pred             HcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcC-CCCCccCCCCCChHHHHHHHcCc-----H
Q 041247           81 QANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGN-KDIAMVPDMDGTLPIVRAAALEQ-----G  154 (507)
Q Consensus        81 ~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~-~~~~~~~~~~g~tpL~~A~~~g~-----~  154 (507)
                      ..|+.+++++|++.. +.+++..|..|.||||+|+..|+.+++++|++++ .++ +.+|..|.||||+|+..++     .
T Consensus        81 ~~~~~~~~~~Ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~  158 (201)
T 3hra_A           81 AQGRTEILAYMLKHA-TPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDI-DFQNDFGYTALIEAVGLREGNQLYQ  158 (201)
T ss_dssp             HTTCHHHHHHHHHHS-CCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCT-TCCCTTSCCHHHHHHHSSCCSHHHH
T ss_pred             HcCCHHHHHHHHhcc-CcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc-CCCCCCCCCHHHHHHHhccchhhHH
Confidence            999999999999765 7899999999999999999999999999999999 665 8999999999999999987     9


Q ss_pred             HHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHHHhc
Q 041247          155 QMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLLRD  195 (507)
Q Consensus       155 ~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  195 (507)
                      +++++|++.++ .+.+|.+|.||||.|++.|+.+++++|++.
T Consensus       159 ~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  200 (201)
T 3hra_A          159 DIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY  200 (201)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTC
T ss_pred             HHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhc
Confidence            99999999999 888999999999999999999999999975

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=2.3e-34  Score=266.71  Aligned_cols=214  Identities=18%  Similarity=0.157  Sum_probs=179.1

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCC--chhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHH
Q 041247           69 TNLGNTALHVAAQANCIDFVKELLKMMS--TEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIV  146 (507)
Q Consensus        69 ~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~--~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~  146 (507)
                      |.+|+||||+|+..|+.+++++|++...  +++++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||
T Consensus         5 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~   83 (236)
T 1ikn_D            5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLH   83 (236)
T ss_dssp             --CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHH
T ss_pred             CCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHH
Confidence            7889999999999999999999988741  2368888999999999999999999999999999886 788889999999


Q ss_pred             HHHHcCcHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCcccccc
Q 041247          147 RAAALEQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQN  225 (507)
Q Consensus       147 ~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~  225 (507)
                      +|+..|+.+++++|++.+. ...                            +...+..|..|.||||+|+..|+      
T Consensus        84 ~A~~~~~~~~v~~Ll~~~~~~~~----------------------------~~~~~~~~~~g~t~L~~A~~~~~------  129 (236)
T 1ikn_D           84 LACEQGCLASVGVLTQSCTTPHL----------------------------HSILKATNYNGHTCLHLASIHGY------  129 (236)
T ss_dssp             HHHHHTCHHHHHHHHHSTTTTSS----------------------------SCGGGCCCTTCCCHHHHHHHTTC------
T ss_pred             HHHHcCCHHHHHHHHhcccchhH----------------------------HHHhhccCCCCCCHHHHHHHcCC------
Confidence            9999999999999988775 211                            22345678889999999999999      


Q ss_pred             ccccccccccchhhhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCccccccc
Q 041247          226 RRGTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKC  305 (507)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~  305 (507)
                                            .+++++|+++++ +++.    .+. ..|+||||+|+..|+.+++++|+++|+++ +.+
T Consensus       130 ----------------------~~~v~~Ll~~g~-~~~~----~~~-~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~  180 (236)
T 1ikn_D          130 ----------------------LGIVELLVSLGA-DVNA----QEP-CNGRTALHLAVDLQNPDLVSLLLKCGADV-NRV  180 (236)
T ss_dssp             ----------------------HHHHHHHHHHTC-CTTC----CCT-TTCCCHHHHHHHTTCHHHHHHHHTTTCCS-CCC
T ss_pred             ----------------------HHHHHHHHHcCC-CCCC----CCC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCC-Ccc
Confidence                                  999999999988 7765    222 13499999999999999999999999998 899


Q ss_pred             ccCCCchHHHHHHhCchHHHHHHHhchhhhhhhhccccCCCCC
Q 041247          306 DENGYTIFHVAVLNRLEELFKFIYDAKSIADLMVDSNDGEGEM  348 (507)
Q Consensus       306 d~~g~t~L~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~d~~g~t  348 (507)
                      |..|+||||+|+.+++.+++++|+++|++..  ....+.+|+|
T Consensus       181 ~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~--~~~~~~~~~~  221 (236)
T 1ikn_D          181 TYQGYSPYQLTWGRPSTRIQQQLGQLTLENL--QMLPESEDEE  221 (236)
T ss_dssp             CTTCCCGGGGCTTSSCHHHHHHHHTTSCGGG--SSCCCCCTTT
T ss_pred             cCCCCCHHHHHHccCchHHHHHHHHcchhhh--hcCCccchHH
Confidence            9999999999999999999999999999763  2467777877

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=4.9e-33  Score=242.70  Aligned_cols=160  Identities=30%  Similarity=0.332  Sum_probs=149.0

Q ss_pred             CCCcccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHH
Q 041247            1 MDNILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAA   80 (507)
Q Consensus         1 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa   80 (507)
                      |.+--++|+.||+.|+.++|++|+++|++++.+|..|+||||+|+..|+.++++.+++. +.+++.+ |.+|+||||+|+
T Consensus         1 ~sdlg~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~-gad~~~~-d~~g~TpLh~A~   78 (169)
T 4gpm_A            1 MSELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISK-GADVNAK-DSDGRTPLHHAA   78 (169)
T ss_dssp             -CHHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHH
T ss_pred             CCHHHHHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhc-ccchhhh-ccCCCCHHHHHH
Confidence            44555789999999999999999999999999999999999999999999999988864 8899988 999999999999


Q ss_pred             HcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHH
Q 041247           81 QANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLL  160 (507)
Q Consensus        81 ~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L  160 (507)
                      +.|+.+++++|+++  |++++.+|.+|+||||+|+..|+.+++++|+++|+++ +.+|.+|+||||+|+++|+.+++++|
T Consensus        79 ~~g~~~~v~~Ll~~--gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~g~~~iv~~L  155 (169)
T 4gpm_A           79 ENGHKEVVKLLISK--GADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADV-NTSDSDGRTPLDLAREHGNEEVVKLL  155 (169)
T ss_dssp             HTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HcCCHHHHHHHHHC--cCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            99999999999999  8999999999999999999999999999999999997 89999999999999999999999999


Q ss_pred             Hhccc
Q 041247          161 HKQTK  165 (507)
Q Consensus       161 l~~~~  165 (507)
                      +++|+
T Consensus       156 l~~GA  160 (169)
T 4gpm_A          156 EKQGG  160 (169)
T ss_dssp             HTC--
T ss_pred             HHCCC
Confidence            99997

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=5.2e-33  Score=260.89  Aligned_cols=190  Identities=18%  Similarity=0.136  Sum_probs=172.5

Q ss_pred             cccHHHHHHHcCCChhh----HHHHhCCCCCCC----ccccCCHHhHHHHHc---CCHHHHHHHHhhchhccccc-----
Q 041247            4 ILSGLGWVMTNGIKEAP----RVLLSNGGANLS----EDSLRRLKLYRAALN---GDWAVAKDIYDKYKVEIGQE-----   67 (507)
Q Consensus         4 g~t~L~~A~~~g~~~~v----~~Ll~~g~~~~~----~~~~g~t~Lh~Aa~~---g~~~~v~~ll~~~~~~i~~~-----   67 (507)
                      |.||||+|+..|+.+.+    ++|+++|.+++.    .|..|+||||+|+..   |+.+++++|++. +.+++..     
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~-g~~~~~~~~~~~   80 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQI-DKDSGNPKPLVN   80 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHH-HHHTTCSSCGGG
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhc-CCcccchhhhcc
Confidence            78999999999999854    666778998888    899999999999999   999999988875 5554422     


Q ss_pred             -----cCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccC-------------CCcHHHHHHHcCcHHHHHHHHh-
Q 041247           68 -----ITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKI-------------GCTAFFYAAASGMVEIVEEMMK-  128 (507)
Q Consensus        68 -----~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~-------------g~t~Lh~A~~~g~~~iv~~Ll~-  128 (507)
                           .|..|+||||+|+..|+.+++++|+++  +++++.+|..             |.||||+|+..|+.+++++|++ 
T Consensus        81 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~  158 (256)
T 2etb_A           81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVEN--GADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLEN  158 (256)
T ss_dssp             CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHC
T ss_pred             cccccccccCCCHHHHHHHcCCHHHHHHHHHc--CCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhc
Confidence                 146799999999999999999999999  8999998876             9999999999999999999999 


Q ss_pred             --cCCCCCccCCCCCChHHHHHHH--cCcHH-------HHHHHHhccc-c-------ccCCCChhhHHHHHHHcCChHHH
Q 041247          129 --GNKDIAMVPDMDGTLPIVRAAA--LEQGQ-------MVLLLHKQTK-N-------SLTDDDCIELLVQLIETGFYVVA  189 (507)
Q Consensus       129 --~~~~~~~~~~~~g~tpL~~A~~--~g~~~-------~v~~Ll~~~~-~-------~~~~~~g~t~L~~A~~~~~~~~v  189 (507)
                        .|+++ +.+|..|.||||+|+.  .++.+       ++++|++.|+ .       +.+|.+|.||||+|++.|+.+++
T Consensus       159 ~~~ga~~-n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v  237 (256)
T 2etb_A          159 PHQPASL-EATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIF  237 (256)
T ss_dssp             SSCCCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             cccCCCc-CccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHH
Confidence              89997 8999999999999999  78888       9999999998 6       88999999999999999999999


Q ss_pred             HHHHhcCc
Q 041247          190 LQLLRDRP  197 (507)
Q Consensus       190 ~~Ll~~~~  197 (507)
                      ++|+++.+
T Consensus       238 ~~Ll~~g~  245 (256)
T 2etb_A          238 RHILQREF  245 (256)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHhCCC
Confidence            99999843

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=1.6e-34  Score=281.00  Aligned_cols=255  Identities=13%  Similarity=0.009  Sum_probs=203.6

Q ss_pred             cCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcc-------------
Q 041247           36 LRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAK-------------  102 (507)
Q Consensus        36 ~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~-------------  102 (507)
                      ...+|+|    ....+++++|++ .+++++.. |..|.|++|     |+.++|+.|+++  +.+.+.             
T Consensus        22 ~~~~~~~----~~~~dlv~~ll~-~ga~i~~~-~~~g~~~~~-----g~~~~v~~Ll~~--g~~~~~~~~~~a~~~~~~~   88 (327)
T 1sw6_A           22 RTAGPII----TFTHDLTSDFLS-SPLKIMKA-LPSPVVNDN-----EQKMKLEAFLQR--LLFPEIQEMPTSLNNDSSN   88 (327)
T ss_dssp             ---CCEE----ECCTTCCCSTTT-SSCCCEEC-BCCCCCCCH-----HHHHHHHHHHHH--HHC----------------
T ss_pred             ccccchh----hhcCchHHHHhh-CCcccccC-CCCCCcccC-----chhHHHHHHHHh--ccCCccccchHhhhccccc
Confidence            3444555    456677887775 58999998 999999988     999999999999  666544             


Q ss_pred             ----cccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcc-CCCCCChHHHHHHHcCcHHHHHHHHhccc-cccCCCChhhH
Q 041247          103 ----KNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMV-PDMDGTLPIVRAAALEQGQMVLLLHKQTK-NSLTDDDCIEL  176 (507)
Q Consensus       103 ----~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~-~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~  176 (507)
                          +.....+.+|.|+..+..+++++|++.|+++ +. +|..|.||||+|+..|+.+++++|++.|+ ++.+|.+|.||
T Consensus        89 ~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dv-n~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~Tp  167 (327)
T 1sw6_A           89 RNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNL-NIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESC  167 (327)
T ss_dssp             ---------------CHHHHHHHHHHHCTTSCCCS-CSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCH
T ss_pred             ccccccCCccchhHHHHHhhHHHHHHHHHhcCCCc-ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence                1112223458888888899999999999998 77 89999999999999999999999999999 88999999999


Q ss_pred             HHHHHHcCC---hHHHHHHHhcCchhhhhcccCCchHHHHHHh----cCCccccccccccccccccchhhhhhhhHHHHH
Q 041247          177 LVQLIETGF---YVVALQLLRDRPRLATKRAENEETALHVLAR----KDLTSTNQNRRGTFFQRCFNLGAEKEENKQALE  249 (507)
Q Consensus       177 L~~A~~~~~---~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (507)
                      ||.|+..|+   .++++.|++.....++.+|..|+||||+|+.    .|+                            .+
T Consensus       168 Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~----------------------------~~  219 (327)
T 1sw6_A          168 LVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGC----------------------------SA  219 (327)
T ss_dssp             HHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTC----------------------------HH
T ss_pred             HHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHcccccc----------------------------HH
Confidence            999999998   7888899988667788999999999999999    788                            89


Q ss_pred             HHHHHHHHHhhcc----------------chhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCcccccccccCCCchH
Q 041247          250 LVESLWTEVVLSS----------------ESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIF  313 (507)
Q Consensus       250 ~v~~Ll~~~~~~~----------------~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L  313 (507)
                      ++++|++.+. ..                ..  +....+..|.||||.|+.      +++|+++  ++ +.+|..|+|||
T Consensus       220 ~v~~Ll~~~~-~~~~~~~~~~i~~~~~~~g~--~~~~~~~~g~t~L~~a~~------~~~Ll~~--~~-n~~d~~G~TpL  287 (327)
T 1sw6_A          220 AAKYYLDILM-GWIVKKQNRPIQSGTNEKES--KPNDKNGERKDSILENLD------LKWIIAN--ML-NAQDSNGDTCL  287 (327)
T ss_dssp             HHHHHHHHHH-HHHHHGGGCCEEEC------------------CHHHHHCS------HHHHHHH--TT-TCCCTTSCCHH
T ss_pred             HHHHHHHHHH-HHHhcccchHHHhhhhcccC--CcccccccCCChhHHHHH------HHHHHHh--CC-CCCCCCCCCHH
Confidence            9999998753 21                11  112233445999999996      8999998  44 88999999999


Q ss_pred             HHHHHhCchHHHHHHHhchhhhhhhhccccCCCCC
Q 041247          314 HVAVLNRLEELFKFIYDAKSIADLMVDSNDGEGEM  348 (507)
Q Consensus       314 ~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~d~~g~t  348 (507)
                      |+|+++|+.+++++|+++|+++    +.+|.+|+|
T Consensus       288 h~A~~~g~~~~v~~Ll~~Gad~----~~~d~~G~T  318 (327)
T 1sw6_A          288 NIAARLGNISIVDALLDYGADP----FIANKSGLR  318 (327)
T ss_dssp             HHHHHHCCHHHHHHHHHTTCCT----TCCCTTSCC
T ss_pred             HHHHHcCCHHHHHHHHHcCCCC----cccCCCCCC
Confidence            9999999999999999999998    889999999

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=1.9e-32  Score=247.03  Aligned_cols=198  Identities=19%  Similarity=0.124  Sum_probs=146.8

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHH
Q 041247           69 TNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRA  148 (507)
Q Consensus        69 ~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  148 (507)
                      +..+.||||.|+..|+.+.++.|++.. +.+++..|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A   79 (201)
T 3hra_A            2 KTYEVGALLEAANQRDTKKVKEILQDT-TYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLYA   79 (201)
T ss_dssp             -CCCTTHHHHHHHTTCHHHHHHHHTCT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred             CcccccHHHHHHHhccHHHHHHHHHcC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHH
Confidence            456788888888888888888888875 5578888888888888888888888888888888886 77888888888888


Q ss_pred             HHcCcHHHHHHHHhccc--cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCccccccc
Q 041247          149 AALEQGQMVLLLHKQTK--NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNR  226 (507)
Q Consensus       149 ~~~g~~~~v~~Ll~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~  226 (507)
                      +..|+.+++++|++.+.  .+..+..|.||||.|+..|+.+++++|++..+.+++.+|..|+||||+|+..++       
T Consensus        80 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~-------  152 (201)
T 3hra_A           80 GAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLRE-------  152 (201)
T ss_dssp             HHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSC-------
T ss_pred             HHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhcc-------
Confidence            88888888888885443  444555555555555555555555555555434444445455555554444443       


Q ss_pred             cccccccccchhhhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCcccccccc
Q 041247          227 RGTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCD  306 (507)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d  306 (507)
                                                        ..                      .++.+++++|+++|+++ +.+|
T Consensus       153 ----------------------------------~~----------------------~~~~~~v~~Ll~~ga~~-~~~~  175 (201)
T 3hra_A          153 ----------------------------------GN----------------------QLYQDIVKLLMENGADQ-SIKD  175 (201)
T ss_dssp             ----------------------------------CS----------------------HHHHHHHHHHHHTTCCT-TCCC
T ss_pred             ----------------------------------ch----------------------hhHHHHHHHHHHCCCCC-CccC
Confidence                                              00                      01278999999999998 8899


Q ss_pred             cCCCchHHHHHHhCchHHHHHHHhch
Q 041247          307 ENGYTIFHVAVLNRLEELFKFIYDAK  332 (507)
Q Consensus       307 ~~g~t~L~~A~~~~~~~iv~~Ll~~g  332 (507)
                      ..|+||||+|+++++.+++++|+++|
T Consensus       176 ~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          176 NSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             CCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            99999999999999999999999876

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=1.2e-32  Score=260.99  Aligned_cols=205  Identities=16%  Similarity=0.113  Sum_probs=171.0

Q ss_pred             CCcccHHHHHHHcCCChhhHHHHh----CCCCCC----CccccCCHHhHHHHHc---CCHHHHHHHHhhchhc-------
Q 041247            2 DNILSGLGWVMTNGIKEAPRVLLS----NGGANL----SEDSLRRLKLYRAALN---GDWAVAKDIYDKYKVE-------   63 (507)
Q Consensus         2 ~~g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~----~~~~~g~t~Lh~Aa~~---g~~~~v~~ll~~~~~~-------   63 (507)
                      .+|.||||+|++.|+.++|+.|++    .+.+.+    ..|..|+||||+|+..   |+.+++++|++. +++       
T Consensus        11 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~-ga~~~~~~~~   89 (273)
T 2pnn_A           11 LYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDV-ARKTDSLKQF   89 (273)
T ss_dssp             CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHH-HHHTTCHHHH
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHh-hccccchhHH
Confidence            368899999999999999999987    454444    3478999999999987   999999999876 333       


Q ss_pred             ccc----ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhccccc--------------CCCcHHHHHHHcCcHHHHHH
Q 041247           64 IGQ----EITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNK--------------IGCTAFFYAAASGMVEIVEE  125 (507)
Q Consensus        64 i~~----~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~--------------~g~t~Lh~A~~~g~~~iv~~  125 (507)
                      ++.    + |..|+||||+|+..|+.+++++|+++  +++++.+|.              .|.||||+|+..|+.+++++
T Consensus        90 i~~~~~~~-d~~g~tpL~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~  166 (273)
T 2pnn_A           90 VNASYTDS-YYKGQTALHIAIERRNMTLVTLLVEN--GADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKF  166 (273)
T ss_dssp             HTCCCCST-TTTTCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHH
T ss_pred             hhcccccc-cCCCCCHHHHHHHcCCHHHHHHHHHC--CCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHH
Confidence            332    3 66899999999999999999999999  899999887              79999999999999999999


Q ss_pred             HHh---cCCCCCccCCCCCChHHHHHHHcCc---------HHHHHHHHhccc-cc-------cCCCChhhHHHHHHHcCC
Q 041247          126 MMK---GNKDIAMVPDMDGTLPIVRAAALEQ---------GQMVLLLHKQTK-NS-------LTDDDCIELLVQLIETGF  185 (507)
Q Consensus       126 Ll~---~~~~~~~~~~~~g~tpL~~A~~~g~---------~~~v~~Ll~~~~-~~-------~~~~~g~t~L~~A~~~~~  185 (507)
                      |++   .|+++ +.+|..|.||||+|+..|+         .+++++|++.++ .+       ..|.+|.||||+|++.|+
T Consensus       167 Ll~~~~~gad~-~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~  245 (273)
T 2pnn_A          167 LLQNSWQPADI-SARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGK  245 (273)
T ss_dssp             HHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred             HHhcccCCCCc-eeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhCh
Confidence            999   89997 8999999999999999988         799999999998 53       589999999999999999


Q ss_pred             hHHHHHHHhcCchhhhhcccCCchHH
Q 041247          186 YVVALQLLRDRPRLATKRAENEETAL  211 (507)
Q Consensus       186 ~~~v~~Ll~~~~~~~~~~d~~g~t~L  211 (507)
                      .+++++|+++...++......+.+|-
T Consensus       246 ~~iv~~Ll~~ga~dp~~~~~~~~~~~  271 (273)
T 2pnn_A          246 IGVLAYILQREIHEPECRHAAAHHHH  271 (273)
T ss_dssp             HHHHHHHHHHHTC-------------
T ss_pred             HHHHHHHHHCCCCCchhhhhhhhhcc
Confidence            99999999995446666666666654

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=2.2e-32  Score=256.68  Aligned_cols=191  Identities=18%  Similarity=0.171  Sum_probs=171.4

Q ss_pred             cCCHHhHHHHHcCCHHHHHHHHh---hchhcccc----ccCCCCCcHHHHHHHc---CCHHHHHHHHHcCCchhhcc---
Q 041247           36 LRRLKLYRAALNGDWAVAKDIYD---KYKVEIGQ----EITNLGNTALHVAAQA---NCIDFVKELLKMMSTEDLAK---  102 (507)
Q Consensus        36 ~g~t~Lh~Aa~~g~~~~v~~ll~---~~~~~i~~----~~~~~g~t~Lh~Aa~~---g~~e~v~~Ll~~~~~~~~~~---  102 (507)
                      .|+||||.|+..|+.+.++.+++   +.+.+++.    + |..|+||||+|+..   |+.+++++|++.  +++++.   
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~-d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~--g~~~~~~~~   77 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTE-GSTGKTCLMKAVLNLQDGVNACIMPLLQI--DKDSGNPKP   77 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSB-TTTTBCHHHHHHHTCBTTBCTTHHHHHHH--HHHTTCSSC
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccC-CCCCCCHHHHHHHccccchHHHHHHHHhc--CCcccchhh
Confidence            37899999999999985543333   45788887    6 99999999999999   999999999999  777653   


Q ss_pred             --------cccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCC-------------CChHHHHHHHcCcHHHHHHHH
Q 041247          103 --------KNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMD-------------GTLPIVRAAALEQGQMVLLLH  161 (507)
Q Consensus       103 --------~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~-------------g~tpL~~A~~~g~~~~v~~Ll  161 (507)
                              +|..|+||||+|+..|+.+++++|+++|+++ +.++..             |.||||+|+..|+.+++++|+
T Consensus        78 ~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll  156 (256)
T 2etb_A           78 LVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV-HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLL  156 (256)
T ss_dssp             GGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHH
T ss_pred             hcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence                    3478999999999999999999999999997 777775             999999999999999999999


Q ss_pred             h---ccc-cccCCCChhhHHHHHHH--cCChH-------HHHHHHhcCchhh-------hhcccCCchHHHHHHhcCCcc
Q 041247          162 K---QTK-NSLTDDDCIELLVQLIE--TGFYV-------VALQLLRDRPRLA-------TKRAENEETALHVLARKDLTS  221 (507)
Q Consensus       162 ~---~~~-~~~~~~~g~t~L~~A~~--~~~~~-------~v~~Ll~~~~~~~-------~~~d~~g~t~Lh~A~~~~~~~  221 (507)
                      +   .++ .+.+|.+|.||||.|+.  .++.+       +++.|++. +.++       +.+|..|+||||+|+..|+  
T Consensus       157 ~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~-ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~--  233 (256)
T 2etb_A          157 ENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQM-GARLCPTVQLEEISNHQGLTPLKLAAKEGK--  233 (256)
T ss_dssp             HCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-HHHHSTTCCGGGCCCTTSCCHHHHHHHTTC--
T ss_pred             hccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHc-CCCcccccccccccCCCCCCHHHHHHHhCC--
Confidence            9   788 88899999999999999  78888       99999998 6666       8899999999999999999  


Q ss_pred             ccccccccccccccchhhhhhhhHHHHHHHHHHHHHHh
Q 041247          222 TNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTEVV  259 (507)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~  259 (507)
                                                .+++++|++++.
T Consensus       234 --------------------------~~~v~~Ll~~g~  245 (256)
T 2etb_A          234 --------------------------IEIFRHILQREF  245 (256)
T ss_dssp             --------------------------HHHHHHHHHHHH
T ss_pred             --------------------------HHHHHHHHhCCC
Confidence                                      999999999987

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.98  E-value=2.7e-32  Score=258.61  Aligned_cols=202  Identities=17%  Similarity=0.131  Sum_probs=171.5

Q ss_pred             CCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhh---chhcccc---ccCCCCCcHHHHHHHc---CCHHHHHHHHHcCC
Q 041247           26 NGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDK---YKVEIGQ---EITNLGNTALHVAAQA---NCIDFVKELLKMMS   96 (507)
Q Consensus        26 ~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~---~~~~i~~---~~~~~g~t~Lh~Aa~~---g~~e~v~~Ll~~~~   96 (507)
                      .++.....|..|.||||.|+..|+.++++.|++.   .+.+++.   ..|..|+||||+|+..   |+.+++++|+++  
T Consensus         2 ~~a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~--   79 (273)
T 2pnn_A            2 VSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDV--   79 (273)
T ss_dssp             ---------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHH--
T ss_pred             CcccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHh--
Confidence            3455667789999999999999999999988873   3444431   2378999999999987   999999999998  


Q ss_pred             chh-------hcc----cccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCC--------------CCChHHHHHHHc
Q 041247           97 TED-------LAK----KNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDM--------------DGTLPIVRAAAL  151 (507)
Q Consensus        97 ~~~-------~~~----~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~--------------~g~tpL~~A~~~  151 (507)
                      +++       ++.    .|..|+||||+|+..|+.+++++|+++|+++ +.++.              .|.||||+|+..
T Consensus        80 ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~  158 (273)
T 2pnn_A           80 ARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV-QAAANGDFFKKTKGRPGFYFGELPLSLAACT  158 (273)
T ss_dssp             HHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHT
T ss_pred             hccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccccccccccccccccccCCCCHHHHHHHc
Confidence            665       333    6779999999999999999999999999997 77776              799999999999


Q ss_pred             CcHHHHHHHHh---ccc-cccCCCChhhHHHHHHHcCC---------hHHHHHHHhcCchhhh-------hcccCCchHH
Q 041247          152 EQGQMVLLLHK---QTK-NSLTDDDCIELLVQLIETGF---------YVVALQLLRDRPRLAT-------KRAENEETAL  211 (507)
Q Consensus       152 g~~~~v~~Ll~---~~~-~~~~~~~g~t~L~~A~~~~~---------~~~v~~Ll~~~~~~~~-------~~d~~g~t~L  211 (507)
                      |+.+++++|++   .++ .+.+|.+|+||||.|++.|+         .++++.|++. +.+++       .+|..|+|||
T Consensus       159 g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~-ga~~n~~~~~~~~~d~~g~TpL  237 (273)
T 2pnn_A          159 NQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILIL-GAKLHPTLKLEEITNRKGLTPL  237 (273)
T ss_dssp             TCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-HHHHCTTCCGGGCCCTTSCCHH
T ss_pred             CCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHh-hhhcccccccccccCCCCCCHH
Confidence            99999999999   788 88899999999999999998         7999999998 55554       5899999999


Q ss_pred             HHHHhcCCccccccccccccccccchhhhhhhhHHHHHHHHHHHHHHh
Q 041247          212 HVLARKDLTSTNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTEVV  259 (507)
Q Consensus       212 h~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~  259 (507)
                      |+|+..|+                            .+++++|+++++
T Consensus       238 ~~A~~~g~----------------------------~~iv~~Ll~~ga  257 (273)
T 2pnn_A          238 ALAASSGK----------------------------IGVLAYILQREI  257 (273)
T ss_dssp             HHHHHTTC----------------------------HHHHHHHHHHHT
T ss_pred             HHHHHhCh----------------------------HHHHHHHHHCCC
Confidence            99999999                            999999999997

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=8.5e-32  Score=253.19  Aligned_cols=190  Identities=21%  Similarity=0.197  Sum_probs=169.3

Q ss_pred             cccHHHHHHHcCCChhhHHHHh----CCCCCCCcc----ccCCHHhHHHH---HcCCHHHHHHHHhhchhc---------
Q 041247            4 ILSGLGWVMTNGIKEAPRVLLS----NGGANLSED----SLRRLKLYRAA---LNGDWAVAKDIYDKYKVE---------   63 (507)
Q Consensus         4 g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~----~~g~t~Lh~Aa---~~g~~~~v~~ll~~~~~~---------   63 (507)
                      |.|+||.|++.|+.+.++.|++    +|.+.+..+    ..|.||||+|+   ..|+.+++++|++. +.+         
T Consensus         5 ~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~-g~~~~~~~~~~~   83 (260)
T 3jxi_A            5 NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDI-AEKTGNMREFIN   83 (260)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH-HHHTTCHHHHHT
T ss_pred             hHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh-cccccchHhhhc
Confidence            6799999999999997666665    888887665    67999999999   77999999999876 322         


Q ss_pred             --cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccc--------------cCCCcHHHHHHHcCcHHHHHHHH
Q 041247           64 --IGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKN--------------KIGCTAFFYAAASGMVEIVEEMM  127 (507)
Q Consensus        64 --i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d--------------~~g~t~Lh~A~~~g~~~iv~~Ll  127 (507)
                        ++.. |..|+||||+|+..|+.++|++|+++  +++++.+|              ..|+||||+|+..|+.+++++|+
T Consensus        84 ~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll  160 (260)
T 3jxi_A           84 SPFRDV-YYRGQTALHIAIERRCKHYVELLVEK--GADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT  160 (260)
T ss_dssp             CCBCCS-SEESBCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHH
T ss_pred             cccccc-ccCCCCHHHHHHHcCCHHHHHHHHhC--CCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence              2333 55899999999999999999999999  89999988              68999999999999999999999


Q ss_pred             h---cCCCCCccCCCCCChHHHHHHHcCc---------HHHHHHHHhccc-c-------ccCCCChhhHHHHHHHcCChH
Q 041247          128 K---GNKDIAMVPDMDGTLPIVRAAALEQ---------GQMVLLLHKQTK-N-------SLTDDDCIELLVQLIETGFYV  187 (507)
Q Consensus       128 ~---~~~~~~~~~~~~g~tpL~~A~~~g~---------~~~v~~Ll~~~~-~-------~~~~~~g~t~L~~A~~~~~~~  187 (507)
                      +   .|+++ +.+|..|.||||+|+..|+         .+++++|++.|+ .       +..|.+|.||||+|++.|+.+
T Consensus       161 ~~~~~ga~~-~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~  239 (260)
T 3jxi_A          161 ENGHKQADL-RRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIG  239 (260)
T ss_dssp             HCSSCCCCT-TCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHH
T ss_pred             hccccCCCC-cccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHH
Confidence            9   89997 8999999999999998887         799999999998 5       679999999999999999999


Q ss_pred             HHHHHHhcCch
Q 041247          188 VALQLLRDRPR  198 (507)
Q Consensus       188 ~v~~Ll~~~~~  198 (507)
                      ++++|+++.+.
T Consensus       240 ~v~~Ll~~g~~  250 (260)
T 3jxi_A          240 IFQHIIRREIA  250 (260)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHhCCC
Confidence            99999999443

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=9.7e-31  Score=228.16  Aligned_cols=156  Identities=27%  Similarity=0.293  Sum_probs=146.8

Q ss_pred             HHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcC
Q 041247           39 LKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASG  118 (507)
Q Consensus        39 t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g  118 (507)
                      ++|+.||+.|+.++|+.||+. +++++.+ |.+|+||||+|+..++.+++++|++.  +++++.+|..|+||||+|+..|
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~-Gadvn~~-d~~g~t~l~~a~~~~~~~~~~~ll~~--gad~~~~d~~g~TpLh~A~~~g   81 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIEN-GADVNAS-DSDGRTPLHHAAENGHKEVVKLLISK--GADVNAKDSDGRTPLHHAAENG   81 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHC-CCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHhc--ccchhhhccCCCCHHHHHHHcC
Confidence            479999999999999998875 8999998 99999999999999999999999999  8999999999999999999999


Q ss_pred             cHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHHHhcCc
Q 041247          119 MVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLLRDRP  197 (507)
Q Consensus       119 ~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~  197 (507)
                      +.+++++|+++|+++ +.+|.+|+||||+|+..|+.+++++|++.++ .+.+|.+|+||||+|++.|+.+++++|+++ +
T Consensus        82 ~~~~v~~Ll~~gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~-G  159 (169)
T 4gpm_A           82 HKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQ-G  159 (169)
T ss_dssp             CHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC--
T ss_pred             CHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHC-C
Confidence            999999999999997 8999999999999999999999999999999 889999999999999999999999999988 4


Q ss_pred             hhh
Q 041247          198 RLA  200 (507)
Q Consensus       198 ~~~  200 (507)
                      .++
T Consensus       160 A~i  162 (169)
T 4gpm_A          160 GWL  162 (169)
T ss_dssp             ---
T ss_pred             CCc
Confidence            443

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=3.1e-31  Score=249.31  Aligned_cols=194  Identities=19%  Similarity=0.159  Sum_probs=170.8

Q ss_pred             cccCCHHhHHHHHcCCHHHHHHHHh---hchhccccc---cCCCCCcHHHHHH---HcCCHHHHHHHHHcCCchh-----
Q 041247           34 DSLRRLKLYRAALNGDWAVAKDIYD---KYKVEIGQE---ITNLGNTALHVAA---QANCIDFVKELLKMMSTED-----   99 (507)
Q Consensus        34 ~~~g~t~Lh~Aa~~g~~~~v~~ll~---~~~~~i~~~---~~~~g~t~Lh~Aa---~~g~~e~v~~Ll~~~~~~~-----   99 (507)
                      +..++++||.|++.|+.+.++.+++   +.+.+++.+   .|..|+||||+|+   +.|+.+++++|++.  +++     
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~--g~~~~~~~   79 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDI--AEKTGNMR   79 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH--HHHTTCHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh--cccccchH
Confidence            4568899999999999997776666   356677655   1377999999999   77999999999998  544     


Q ss_pred             ------hcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCC--------------CCCChHHHHHHHcCcHHHHHH
Q 041247          100 ------LAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPD--------------MDGTLPIVRAAALEQGQMVLL  159 (507)
Q Consensus       100 ------~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~--------------~~g~tpL~~A~~~g~~~~v~~  159 (507)
                            .+..|..|+||||+|+..|+.+++++|+++|+++ +.++              ..|.||||+|+..|+.+++++
T Consensus        80 ~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~  158 (260)
T 3jxi_A           80 EFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV-HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHY  158 (260)
T ss_dssp             HHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHH
T ss_pred             hhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCc-CccccccccCcccccccccCCCCHHHHHHHcCCHHHHHH
Confidence                  3445668999999999999999999999999997 7777              689999999999999999999


Q ss_pred             HHh---ccc-cccCCCChhhHHHHHHHcCC---------hHHHHHHHhcCchhh-------hhcccCCchHHHHHHhcCC
Q 041247          160 LHK---QTK-NSLTDDDCIELLVQLIETGF---------YVVALQLLRDRPRLA-------TKRAENEETALHVLARKDL  219 (507)
Q Consensus       160 Ll~---~~~-~~~~~~~g~t~L~~A~~~~~---------~~~v~~Ll~~~~~~~-------~~~d~~g~t~Lh~A~~~~~  219 (507)
                      |++   .++ .+.+|.+|.||||.|+..++         .++++.|++. +.++       +.+|.+|+||||+|+..|+
T Consensus       159 Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~-ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~  237 (260)
T 3jxi_A          159 LTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIK-CAKLFPDTNLEALLNNDGLSPLMMAAKTGK  237 (260)
T ss_dssp             HHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHH-HHHHCTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred             HHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHh-CcccccccchhhcccCCCCCHHHHHHHcCC
Confidence            999   777 88899999999999999887         6999999998 5655       6799999999999999999


Q ss_pred             ccccccccccccccccchhhhhhhhHHHHHHHHHHHHHHh
Q 041247          220 TSTNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTEVV  259 (507)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~  259 (507)
                                                  .+++++|++++.
T Consensus       238 ----------------------------~~~v~~Ll~~g~  249 (260)
T 3jxi_A          238 ----------------------------IGIFQHIIRREI  249 (260)
T ss_dssp             ----------------------------HHHHHHHHHHHH
T ss_pred             ----------------------------HHHHHHHHHhCC
Confidence                                        999999999997

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.97  E-value=9.5e-33  Score=271.29  Aligned_cols=292  Identities=12%  Similarity=0.056  Sum_probs=188.7

Q ss_pred             ccHHHHHHH-cCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhcc-ccccCCCCCcHHHHHHHc
Q 041247            5 LSGLGWVMT-NGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEI-GQEITNLGNTALHVAAQA   82 (507)
Q Consensus         5 ~t~L~~A~~-~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i-~~~~~~~g~t~Lh~Aa~~   82 (507)
                      .+++++|.. .++.+.+++++++|.       ++.||||.|+..|+.+++++|++...... ....+..|+||||+|++.
T Consensus        66 ll~~~~a~~~~~~~~~~~~l~~~g~-------~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~  138 (376)
T 2aja_A           66 LLCLYYAHYNRNAKQLWSDAHKKGI-------KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAEN  138 (376)
T ss_dssp             HHHHHHHHTTTTCTTHHHHHHHHTC-------CHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHcCC-------CcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHc
Confidence            467788776 588999999998874       34599999999999999998887632111 011245678999999999


Q ss_pred             CCHHHHHHHHHcCCch-----hhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCcc--CCCCCChHHHHHH-HcCcH
Q 041247           83 NCIDFVKELLKMMSTE-----DLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMV--PDMDGTLPIVRAA-ALEQG  154 (507)
Q Consensus        83 g~~e~v~~Ll~~~~~~-----~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~--~~~~g~tpL~~A~-~~g~~  154 (507)
                      |+.++|++|+++  ++     +++..+   .||||+|+..|+.+++++|+++|+++ +.  .|..|.||||+|+ .+|+.
T Consensus       139 G~~eiv~~Ll~~--gad~~~~~i~~~~---~TpLh~Aa~~G~~eiv~~Ll~~ga~~-~~~~~d~~g~TpL~~Aa~~~G~~  212 (376)
T 2aja_A          139 GHLHVLNRLCEL--APTEIMAMIQAEN---YHAFRLAAENGHLHVLNRLCELAPTE-ATAMIQAENYYAFRWAAVGRGHH  212 (376)
T ss_dssp             TCHHHHHHHHHS--CTTTHHHHHSHHH---HHHHHHHHHTTCHHHHHHHHHSCGGG-HHHHHHHHHHHHHHHHHSTTCCH
T ss_pred             CCHHHHHHHHhC--CCCccccccCCCC---CCHHHHHHHCCCHHHHHHHHHcCCcc-chhccCCCCCCHHHHHHHHCCCH
Confidence            999999999999  54     344333   89999999999999999999999996 55  7888999999999 99999


Q ss_pred             HHHHHHHhccccccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCccccccccccccccc
Q 041247          155 QMVLLLHKQTKNSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRC  234 (507)
Q Consensus       155 ~~v~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~  234 (507)
                      +++++|++.++      .|.||||.|+++|+.+++++|++. +...+.+|    ++++.|+..|+.++.....  ... +
T Consensus       213 eiv~~Ll~~ga------~~~taL~~Aa~~g~~evv~lL~~~-ga~~~~~~----~~l~~A~~~g~~~vv~~~~--~~~-~  278 (376)
T 2aja_A          213 NVINFLLDCPV------MLAYAEIHEFEYGEKYVNPFIARH-VNRLKEMH----DAFKLSNPDGVFDLVTKSE--CLQ-G  278 (376)
T ss_dssp             HHHHHHTTSHH------HHHHHHHCTTTTTTTTHHHHHHHH-HHHHHHHH----TTTTTTSSSSCCCCSSHHH--HHH-H
T ss_pred             HHHHHHHhCCC------ccchHHHHHHHCCCHHHHHHHHhc-Cccccccc----HHHHHHHHCCChhhhcHHh--hhh-h
Confidence            99999999764      489999999999999999999988 55554443    4788899999855421000  000 0


Q ss_pred             cchhhh--hhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCcccccccccCCCch
Q 041247          235 FNLGAE--KEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTI  312 (507)
Q Consensus       235 ~~~~~~--~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~  312 (507)
                      ......  ........+.+++|++...  +..........+.++||||+|++.|+.+++++|++.+    ..+|..|+|+
T Consensus       279 ~~~~~~li~~~~~~~~~~~~~Ll~~~~--vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~~----~v~~~~~~~~  352 (376)
T 2aja_A          279 FYMLRNLIRRNDEVLLDDIRFLLSIPG--IKALAPTATIPGDANELLRLALRLGNQGACALLLSIP----SVLALTKANN  352 (376)
T ss_dssp             HHHHHHHHHHCCGGGHHHHHHHHTSTT--TGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSH----HHHHSCC---
T ss_pred             HHHHHHHHHcchhhHHHHHHHHHhChh--hhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcCh----HHHHHHHHhc
Confidence            000000  0111112444555543211  0000000011122367777777777777777777643    4456777777


Q ss_pred             HHHHHHhCchHHHHHHH
Q 041247          313 FHVAVLNRLEELFKFIY  329 (507)
Q Consensus       313 L~~A~~~~~~~iv~~Ll  329 (507)
                      +.+|-..|+.++.++-.
T Consensus       353 ~~~~~~~~~~~~~~~~~  369 (376)
T 2aja_A          353 YYINETGGRLDLRAVAL  369 (376)
T ss_dssp             -----------------
T ss_pred             cccccccccccHHHHHH
Confidence            77777777777766544

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=3.7e-30  Score=226.05  Aligned_cols=167  Identities=17%  Similarity=0.131  Sum_probs=107.4

Q ss_pred             cccHHHHHHHcCCChhhHHHHhCCCC-CCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHc
Q 041247            4 ILSGLGWVMTNGIKEAPRVLLSNGGA-NLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQA   82 (507)
Q Consensus         4 g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~   82 (507)
                      +.||||.|+..|+.+.+++|++++.. .+..|..|.||||+|+..|+.+++++|++. +.+++.+ |..|+||||+|+..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~   79 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEW-GADPHIL-AKERESALSLASTG   79 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCC-CTTCCCHHHHHHHT
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCchhh-cccCCCHHHHHHHC
Confidence            34677777777777777777766655 345566667777777777777777766644 5566665 66667777777777


Q ss_pred             CCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHh
Q 041247           83 NCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHK  162 (507)
Q Consensus        83 g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  162 (507)
                      |+.+++++|+++  +++++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++
T Consensus        80 ~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~~~~L~~  156 (172)
T 3v30_A           80 GYTDIVGLLLER--DVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADL-TTEADSGYTPMDLAVALGYRKVQQVIEN  156 (172)
T ss_dssp             TCHHHHHHHHTT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHhCcHHHHHHHHH
Confidence            777777777766  5666666667777777777777777777777776665 6666667777777777777777777776


Q ss_pred             ccc-cccCCCChhh
Q 041247          163 QTK-NSLTDDDCIE  175 (507)
Q Consensus       163 ~~~-~~~~~~~g~t  175 (507)
                      +++ ....+..+.|
T Consensus       157 ~~~~~~~~~~~~~~  170 (172)
T 3v30_A          157 HILKLFQSNLVPAD  170 (172)
T ss_dssp             HHHHHSCC------
T ss_pred             HHHHHhcccCCCCC
Confidence            665 4444444444

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=3e-30  Score=224.21  Aligned_cols=159  Identities=19%  Similarity=0.216  Sum_probs=146.6

Q ss_pred             CCcccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHH
Q 041247            2 DNILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQ   81 (507)
Q Consensus         2 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~   81 (507)
                      ++..||||.|+..|+.+++++|+++|.+.+..|..|+||||.|+. |+.+++++|++. +.+++.+ |..|+||||+|+.
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~   79 (162)
T 1ihb_A            3 EPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLR-GANPDLK-DRTGFAVIHDAAR   79 (162)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHH
T ss_pred             chHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHc-CCCCCCC-CCCCCCHHHHHHH
Confidence            456799999999999999999999999999999999999999999 999999988875 7888888 8999999999999


Q ss_pred             cCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHH
Q 041247           82 ANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLH  161 (507)
Q Consensus        82 ~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll  161 (507)
                      .|+.+++++|+++  +.+++.+|..|+||||+|+..|+.+++++|++++++..+.+|..|.||||+|+..|+.+++++|+
T Consensus        80 ~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll  157 (162)
T 1ihb_A           80 AGFLDTLQTLLEF--QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQ  157 (162)
T ss_dssp             HTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence            9999999999998  89999999999999999999999999999999999855889999999999999999999999999


Q ss_pred             hccc
Q 041247          162 KQTK  165 (507)
Q Consensus       162 ~~~~  165 (507)
                      ++|+
T Consensus       158 ~~GA  161 (162)
T 1ihb_A          158 ANGA  161 (162)
T ss_dssp             HTC-
T ss_pred             HhCC
Confidence            9875

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=5e-30  Score=229.54  Aligned_cols=159  Identities=18%  Similarity=0.169  Sum_probs=121.3

Q ss_pred             CccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHH
Q 041247           32 SEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAF  111 (507)
Q Consensus        32 ~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~L  111 (507)
                      .+|..|+||||+|+..|+.+++++|++. +.+++.+ |..|+||||+|+..|+.+++++|+++  +++++.+|..|.|||
T Consensus        30 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L  105 (192)
T 2rfm_A           30 YRDSYNRTPLMVACMLGMENAIDKLVEN-FDKLEDK-DIEGSTALIWAVKNNRLGIAEKLLSK--GSNVNTKDFSGKTPL  105 (192)
T ss_dssp             CCCTTCCCHHHHHHHHTCGGGHHHHHHH-HCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHH--TCCTTCCCTTSCCHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHh-ccccccc-cccCccHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCcHH
Confidence            4566777777777777777777777764 5666666 77777777777777777777777777  677777777777777


Q ss_pred             HHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHH
Q 041247          112 FYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVAL  190 (507)
Q Consensus       112 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~  190 (507)
                      |+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.++ .+..|..|.||+|.|+..|+.++++
T Consensus       106 ~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~  184 (192)
T 2rfm_A          106 MWSIIFGYSEMSYFLLEHGANV-NDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIK  184 (192)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHH
Confidence            7777777777777777777775 6777777777777777777777777777777 6677777777777777777777777


Q ss_pred             HHHhc
Q 041247          191 QLLRD  195 (507)
Q Consensus       191 ~Ll~~  195 (507)
                      +|++.
T Consensus       185 ~Ll~~  189 (192)
T 2rfm_A          185 IFTEV  189 (192)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            77765

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=1.3e-29  Score=222.56  Aligned_cols=169  Identities=18%  Similarity=0.134  Sum_probs=151.8

Q ss_pred             CCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHH
Q 041247           37 RRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAA  116 (507)
Q Consensus        37 g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~  116 (507)
                      +.+|||.|+..|+.+++++++++.+..++.+ |..|+||||+|+..|+.+++++|+++  +++++.+|..|+||||+|+.
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~   78 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKP-DERGFTPLIWASAFGEIETVRFLLEW--GADPHILAKERESALSLAST   78 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCC-CTTSCCHHHHHHHTTCHHHHHHHHHH--TCCTTCCCTTCCCHHHHHHH
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCC-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCchhhcccCCCHHHHHHH
Confidence            4679999999999999999999877768887 99999999999999999999999999  89999999999999999999


Q ss_pred             cCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHHHhc
Q 041247          117 SGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLLRD  195 (507)
Q Consensus       117 ~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  195 (507)
                      .|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.++ .+..|.+|.||||.|+..|+.+++++|+++
T Consensus        79 ~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  157 (172)
T 3v30_A           79 GGYTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENH  157 (172)
T ss_dssp             TTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHH
Confidence            99999999999999997 8899999999999999999999999999999 888999999999999999999999999998


Q ss_pred             CchhhhhcccCCchH
Q 041247          196 RPRLATKRAENEETA  210 (507)
Q Consensus       196 ~~~~~~~~d~~g~t~  210 (507)
                       ......++..|.||
T Consensus       158 -~~~~~~~~~~~~~p  171 (172)
T 3v30_A          158 -ILKLFQSNLVPADP  171 (172)
T ss_dssp             -HHHHSCC-------
T ss_pred             -HHHHhcccCCCCCC
Confidence             55566777777776

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.97  E-value=1.4e-29  Score=221.78  Aligned_cols=156  Identities=24%  Similarity=0.292  Sum_probs=132.1

Q ss_pred             cccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcC
Q 041247            4 ILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQAN   83 (507)
Q Consensus         4 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g   83 (507)
                      +.|+|++|++.|+.+++++|+++|.+.+..|..|.||||+|+..|+.+++++|++. +.+++.+ |..|+||||+|+..|
T Consensus        14 ~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~   91 (169)
T 2y1l_E           14 LGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKN-GADVNAV-DHAGMTPLRLAALFG   91 (169)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTT
T ss_pred             ccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcc-CCCCCCHHHHHHHcC
Confidence            45788888888888888888888888888888888888888888888888877764 6777777 888888888888888


Q ss_pred             CHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhc
Q 041247           84 CIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQ  163 (507)
Q Consensus        84 ~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~  163 (507)
                      +.+++++|+++  +++++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.|||++|+..|+.+++++|++.
T Consensus        92 ~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  168 (169)
T 2y1l_E           92 HLEIVEVLLKN--GADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV-NAQDKFGKTAFDISIDNGNEDLAEILQKL  168 (169)
T ss_dssp             CHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred             CHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence            88888888888  7888888888888888888888888888888888886 77888888888888888888888888876


Q ss_pred             c
Q 041247          164 T  164 (507)
Q Consensus       164 ~  164 (507)
                      |
T Consensus       169 G  169 (169)
T 2y1l_E          169 N  169 (169)
T ss_dssp             -
T ss_pred             C
Confidence            4

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.97  E-value=9.1e-30  Score=222.41  Aligned_cols=158  Identities=18%  Similarity=0.122  Sum_probs=140.1

Q ss_pred             CcccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHc
Q 041247            3 NILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQA   82 (507)
Q Consensus         3 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~   82 (507)
                      +|.||||.|+..|+.+++++|++.|.+.+..|..|.||||+|+..|+.+++++|++. +.+++.. |..|.||||+|+..
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~   79 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQN-GADPQLL-GKGRESALSLACSK   79 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTCCCHHHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCc-CCCCCcHHHHHHHc
Confidence            578999999999999999999999888888888999999999999999999988865 7778877 88889999999999


Q ss_pred             CCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHh
Q 041247           83 NCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHK  162 (507)
Q Consensus        83 g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  162 (507)
                      |+.+++++|+++  +++++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.|||++|+..|+.+++++|++
T Consensus        80 ~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~L~~  156 (167)
T 3v31_A           80 GYTDIVKMLLDC--GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADP-TIETDSGYNSMDLAVALGYRSVQQVIES  156 (167)
T ss_dssp             TCHHHHHHHHHH--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHC--CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence            999999999988  7888888999999999999999999999999999886 7888889999999999999999999988


Q ss_pred             ccc
Q 041247          163 QTK  165 (507)
Q Consensus       163 ~~~  165 (507)
                      ++.
T Consensus       157 ~~~  159 (167)
T 3v31_A          157 HLL  159 (167)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            775

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=1.3e-30  Score=247.10  Aligned_cols=189  Identities=20%  Similarity=0.210  Sum_probs=163.7

Q ss_pred             cccHHHHHHHcCCChhhHHHHhCCCC--CCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHH-
Q 041247            4 ILSGLGWVMTNGIKEAPRVLLSNGGA--NLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAA-   80 (507)
Q Consensus         4 g~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa-   80 (507)
                      +.+++|.|+..|+.+.++.+++.+.+  .+..|..|+||||+|+..|+.+++++|++....+++.. |..|.||||+|+ 
T Consensus        76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~-~~~g~tpL~~a~~  154 (276)
T 4hbd_A           76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQ-NRAGYSPIMLTAL  154 (276)
T ss_dssp             HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCC-CTTSCCHHHHGGG
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCC-CCCCCCHHHHHHH
Confidence            34778888899999999888877655  56778889999999999999999998887754478877 888999999999 


Q ss_pred             ----HcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHH
Q 041247           81 ----QANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQM  156 (507)
Q Consensus        81 ----~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~  156 (507)
                          ..++.+++++|++.  +.+.+..|..|+||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|+.++
T Consensus       155 ~~~~~~~~~~~v~~Ll~~--g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~-n~~d~~G~TpLh~A~~~g~~~i  231 (276)
T 4hbd_A          155 ATLKTQDDIETVLQLFRL--GNINAKASQAGQTALMLAVSHGRVDVVKALLACEADV-NVQDDDGSTALMCACEHGHKEI  231 (276)
T ss_dssp             CCCCSHHHHHHHHHHHHH--SCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHhhhhhhHHHHHHHHHc--CCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHCCCHHH
Confidence                66788999999998  7888888888999999999999999999999999986 8889999999999999999999


Q ss_pred             HHHHHh-ccc-cccCCCChhhHHHHHHHcCChHHHHHHHhcC
Q 041247          157 VLLLHK-QTK-NSLTDDDCIELLVQLIETGFYVVALQLLRDR  196 (507)
Q Consensus       157 v~~Ll~-~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~  196 (507)
                      +++|++ .++ .+.+|.+|.||||.|++.|+.+++++|+++.
T Consensus       232 v~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          232 AGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             HHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             HHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            999998 677 7888899999999999999999999998873

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.96  E-value=1.4e-31  Score=263.02  Aligned_cols=262  Identities=15%  Similarity=0.027  Sum_probs=194.9

Q ss_pred             HcCCChhhHHHHhCCCCCCCccccCCHHhHHHHH-cCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHH
Q 041247           13 TNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAAL-NGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKEL   91 (507)
Q Consensus        13 ~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~-~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~L   91 (507)
                      ..+..+.+..++++..+.  .+..+.++++.|.. .++.+.+++++.+         +.+++||||+|++.|+.++|++|
T Consensus        43 ~~~~~~~~~~~~~~~~~~--~~~~~ll~~~~a~~~~~~~~~~~~l~~~---------g~~~~T~Lh~Aa~~G~~e~v~~L  111 (376)
T 2aja_A           43 TLSYKEAIHIFLPGTKNM--EQVRQLLCLYYAHYNRNAKQLWSDAHKK---------GIKSEVICFVAAITGCSSALDTL  111 (376)
T ss_dssp             HSCHHHHHHHCCCCSSHH--HHHHHHHHHHHHHTTTTCTTHHHHHHHH---------TCCHHHHHHHHHHHCCHHHHHHH
T ss_pred             hccHHHHHHHHhcCCCCH--HHHHHHHHHHHHHhcCCCHHHHHHHHHc---------CCCcCCHHHHHHHcCCHHHHHHH
Confidence            345556666666554222  12235677888877 5788888877754         34567999999999999999999


Q ss_pred             HHcCCchh---hcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCC--CccCCCCCChHHHHHHHcCcHHHHHHHHhccc-
Q 041247           92 LKMMSTED---LAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDI--AMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK-  165 (507)
Q Consensus        92 l~~~~~~~---~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~--~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-  165 (507)
                      +++  ++.   .+..|..|.||||+|+..|+.+++++|+++|++.  .+..+.+ .||||+|+.+|+.+++++|+++++ 
T Consensus       112 l~~--ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~  188 (376)
T 2aja_A          112 CLL--LTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPT  188 (376)
T ss_dssp             TTC----CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGG
T ss_pred             HHc--CCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCc
Confidence            998  441   2244556789999999999999999999999752  1222233 899999999999999999999998 


Q ss_pred             ccc--CCCChhhHHHHHH-HcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCccccccccccccccccchhhhhh
Q 041247          166 NSL--TDDDCIELLVQLI-ETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKE  242 (507)
Q Consensus       166 ~~~--~~~~g~t~L~~A~-~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (507)
                      .+.  .|.+|.||||.|+ .+|+.+++++|++. +.       .|.||||.|+..|+                       
T Consensus       189 ~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~-ga-------~~~taL~~Aa~~g~-----------------------  237 (376)
T 2aja_A          189 EATAMIQAENYYAFRWAAVGRGHHNVINFLLDC-PV-------MLAYAEIHEFEYGE-----------------------  237 (376)
T ss_dssp             GHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTS-HH-------HHHHHHHCTTTTTT-----------------------
T ss_pred             cchhccCCCCCCHHHHHHHHCCCHHHHHHHHhC-CC-------ccchHHHHHHHCCC-----------------------
Confidence            555  7888999999999 99999999999985 42       38999999999999                       


Q ss_pred             hhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHH---------------------------HHHHHH
Q 041247          243 ENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVL---------------------------FLLILI  295 (507)
Q Consensus       243 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~---------------------------iv~~Ll  295 (507)
                           .+++++|++++. +++..          .++++.|+.+|+.+                           .+++|+
T Consensus       238 -----~evv~lL~~~ga-~~~~~----------~~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll  301 (376)
T 2aja_A          238 -----KYVNPFIARHVN-RLKEM----------HDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLL  301 (376)
T ss_dssp             -----TTHHHHHHHHHH-HHHHH----------HTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHH
T ss_pred             -----HHHHHHHHhcCc-ccccc----------cHHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHH
Confidence                 899999999988 55431          23445555555444                           444444


Q ss_pred             HHCccc----ccccccCCCchHHHHHHhCchHHHHHHHhchhhh
Q 041247          296 REYADL----MRKCDENGYTIFHVAVLNRLEELFKFIYDAKSIA  335 (507)
Q Consensus       296 ~~~~~~----~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~ga~~  335 (507)
                      +.+..-    .....+.+.||||+|+..|+.+++++|++.|...
T Consensus       302 ~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~~~v~  345 (376)
T 2aja_A          302 SIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVL  345 (376)
T ss_dssp             TSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSHHHH
T ss_pred             hChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcChHHH
Confidence            321100    0122346779999999999999999999987543

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.96  E-value=1.3e-29  Score=240.18  Aligned_cols=191  Identities=18%  Similarity=0.170  Sum_probs=175.5

Q ss_pred             cCCHHhHHHHHcCCHHHHHHHHhhch-hccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCch-hhcccccCCCcHHHH
Q 041247           36 LRRLKLYRAALNGDWAVAKDIYDKYK-VEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTE-DLAKKNKIGCTAFFY  113 (507)
Q Consensus        36 ~g~t~Lh~Aa~~g~~~~v~~ll~~~~-~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~-~~~~~d~~g~t~Lh~  113 (507)
                      ...+++|.|+..|+.+.++.++.... ..++.+ |.+|+||||+|+..|+.+++++|++.  +. +++..|..|.||||+
T Consensus        75 ~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~-d~~g~T~Lh~A~~~g~~~~v~~Ll~~--g~~~~~~~~~~g~tpL~~  151 (276)
T 4hbd_A           75 ACRSDAHPELVRRHLVTFRAMSARLLDYVVNIA-DSNGNTALHYSVSHANFPVVQQLLDS--GVCKVDKQNRAGYSPIML  151 (276)
T ss_dssp             HHSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--SCCCTTCCCTTSCCHHHH
T ss_pred             HhccCCCHHHHHHHHHHHHHHHHHHHhhcCcCC-CCCCCCHHHHHHHCCCHHHHHHHHHC--CCCcCCCCCCCCCCHHHH
Confidence            45678899999999999998876532 236777 99999999999999999999999999  65 999999999999999


Q ss_pred             HH-----HcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChH
Q 041247          114 AA-----ASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYV  187 (507)
Q Consensus       114 A~-----~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~  187 (507)
                      |+     ..++.+++++|++.|.+. ...+..|.||||+|+..|+.+++++|++.|+ .+..|.+|.||||.|+..|+.+
T Consensus       152 a~~~~~~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~  230 (276)
T 4hbd_A          152 TALATLKTQDDIETVLQLFRLGNIN-AKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKE  230 (276)
T ss_dssp             GGGCCCCSHHHHHHHHHHHHHSCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             HHHHHhhhhhhHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHH
Confidence            99     678999999999999875 7889999999999999999999999999999 8899999999999999999999


Q ss_pred             HHHHHHhcCchhhhhcccCCchHHHHHHhcCCccccccccccccccccchhhhhhhhHHHHHHHHHHHHHH
Q 041247          188 VALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTEV  258 (507)
Q Consensus       188 ~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~  258 (507)
                      ++++|++..+.+++.+|.+|+||||+|+..|+                            .+++++|+++.
T Consensus       231 iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~----------------------------~~iv~~Ll~~~  273 (276)
T 4hbd_A          231 IAGLLLAVPSCDISLTDRDGSTALMVALDAGQ----------------------------SEIASMLYSRM  273 (276)
T ss_dssp             HHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTC----------------------------HHHHHHHHHHC
T ss_pred             HHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCC----------------------------HHHHHHHHhcc
Confidence            99999996688899999999999999999999                            99999999865

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=4.8e-29  Score=214.45  Aligned_cols=152  Identities=22%  Similarity=0.245  Sum_probs=134.9

Q ss_pred             CcccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHc
Q 041247            3 NILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQA   82 (507)
Q Consensus         3 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~   82 (507)
                      ++.|||+.|+..|+.+++++|+++|.+.. .+..|.||||+|+..|+.+++++|++. +.+++.+ |..|+||||+|+..
T Consensus         1 d~~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~   77 (153)
T 1awc_B            1 DLGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRA-GVSRDAR-TKVDRTPLHMAASE   77 (153)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTTCC-CTTCCCHHHHHHHH
T ss_pred             CccHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCC-CCCCCCHHHHHHHc
Confidence            35789999999999999999999986554 578899999999999999999988864 7788887 88899999999999


Q ss_pred             CCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHH
Q 041247           83 NCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLL  160 (507)
Q Consensus        83 g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L  160 (507)
                      |+.+++++|+++  +++++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|
T Consensus        78 ~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           78 GHANIVEVLLKH--GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV-HTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             TCHHHHHHHHTT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ChHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            999999999988  7889999999999999999999999999999999986 88899999999999999999998876

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.96  E-value=1e-28  Score=220.98  Aligned_cols=165  Identities=16%  Similarity=0.136  Sum_probs=155.8

Q ss_pred             hccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCC
Q 041247           62 VEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDG  141 (507)
Q Consensus        62 ~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g  141 (507)
                      ..++.+ |..|+||||+|+..|+.+++++|++.  +.+++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|..|
T Consensus        26 ~~~n~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g  101 (192)
T 2rfm_A           26 FLRNYR-DSYNRTPLMVACMLGMENAIDKLVEN--FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSG  101 (192)
T ss_dssp             HHHTCC-CTTCCCHHHHHHHHTCGGGHHHHHHH--HCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTS
T ss_pred             HHHhCc-CCCCCCHHHHHHHcCCHHHHHHHHHh--ccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCC
Confidence            345666 89999999999999999999999999  8999999999999999999999999999999999997 8899999


Q ss_pred             ChHHHHHHHcCcHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCc
Q 041247          142 TLPIVRAAALEQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLT  220 (507)
Q Consensus       142 ~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~  220 (507)
                      .||||+|+..|+.+++++|++.++ .+..|..|.||||.|+..|+.+++++|++. +.+++.+|..|.||||+|+..++ 
T Consensus       102 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~-  179 (192)
T 2rfm_A          102 KTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLEL-GADISARDLTGLTAEASARIFGR-  179 (192)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCBCTTSCBHHHHHHHTTC-
T ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHhCc-
Confidence            999999999999999999999999 888999999999999999999999999998 67788999999999999999999 


Q ss_pred             cccccccccccccccchhhhhhhhHHHHHHHHHHHHHHh
Q 041247          221 STNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTEVV  259 (507)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~  259 (507)
                                                 .+++++|++.+.
T Consensus       180 ---------------------------~~~v~~Ll~~~~  191 (192)
T 2rfm_A          180 ---------------------------QEVIKIFTEVRR  191 (192)
T ss_dssp             ---------------------------HHHHHHHHHHHH
T ss_pred             ---------------------------HHHHHHHHhccC
Confidence                                       999999998763

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=9.9e-29  Score=215.79  Aligned_cols=158  Identities=19%  Similarity=0.178  Sum_probs=149.9

Q ss_pred             cCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHH
Q 041247           36 LRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAA  115 (507)
Q Consensus        36 ~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~  115 (507)
                      .|.||||.|+..|+.++++++++. +.+++.+ |..|+||||+|+..|+.+++++|+++  +++++..|..|.||||+|+
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~-~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~   77 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQ-ENVINHT-DEEGFTPLMWAAAHGQIAVVEFLLQN--GADPQLLGKGRESALSLAC   77 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHH-SSCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHc-CCCcCCC-CCCCCCHHHHHHHCCCHHHHHHHHHc--CCCCCCcCCCCCcHHHHHH
Confidence            578999999999999999999976 6778888 99999999999999999999999999  8999999999999999999


Q ss_pred             HcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHHHh
Q 041247          116 ASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLLR  194 (507)
Q Consensus       116 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  194 (507)
                      ..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.++ .+..+.+|.||+|.|+..|+.+++++|++
T Consensus        78 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  156 (167)
T 3v31_A           78 SKGYTDIVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIES  156 (167)
T ss_dssp             HHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHCCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence            999999999999999997 8899999999999999999999999999998 88899999999999999999999999998


Q ss_pred             cCch
Q 041247          195 DRPR  198 (507)
Q Consensus       195 ~~~~  198 (507)
                      +...
T Consensus       157 ~~~~  160 (167)
T 3v31_A          157 HLLK  160 (167)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8443

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=7.7e-29  Score=216.02  Aligned_cols=157  Identities=17%  Similarity=0.107  Sum_probs=111.2

Q ss_pred             CcccHHHHHHHcCCChhhHHHHhCCC-CCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHH
Q 041247            3 NILSGLGWVMTNGIKEAPRVLLSNGG-ANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQ   81 (507)
Q Consensus         3 ~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~   81 (507)
                      +|.||||.|++.|+.+++++|++.+. +....+..|.||||+|+..|+.+++++|++. +.+++.+ |..|+||||+|+.
T Consensus         7 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~   84 (165)
T 3twr_A            7 EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH-GADVHAK-DKGGLVPLHNACS   84 (165)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHH
T ss_pred             hhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhc-CCCCCcc-CCCCCCHHHHHHH
Confidence            45677777777777777777777443 3334566677777777777777777766654 5666666 7777777777777


Q ss_pred             cCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHH
Q 041247           82 ANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLH  161 (507)
Q Consensus        82 ~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll  161 (507)
                      .|+.+++++|+++  +++++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+. |+.+++++|+
T Consensus        85 ~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~a~~-~~~~i~~~L~  160 (165)
T 3twr_A           85 YGHYEVAELLVKH--GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP-TKKNRDGNTPLDLVKD-GDTDIQDLLR  160 (165)
T ss_dssp             TTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCTGGGSCT-TCHHHHHHHH
T ss_pred             cCcHHHHHHHHhC--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCChhHhHhc-CChHHHHHHh
Confidence            7777777777777  6777777777777777777777777777777777775 6777777777777655 6777777777


Q ss_pred             hccc
Q 041247          162 KQTK  165 (507)
Q Consensus       162 ~~~~  165 (507)
                      +.++
T Consensus       161 ~~gA  164 (165)
T 3twr_A          161 GDAA  164 (165)
T ss_dssp             TC--
T ss_pred             hccc
Confidence            6653

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=1.3e-30  Score=239.79  Aligned_cols=194  Identities=18%  Similarity=0.138  Sum_probs=162.7

Q ss_pred             hHHHHhCCCCCCCc---cccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 041247           20 PRVLLSNGGANLSE---DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMS   96 (507)
Q Consensus        20 v~~Ll~~g~~~~~~---~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~   96 (507)
                      ++.|+++|++++..   +..+.||||.|+..|+.+++++|++. +.+++.+ |..|+||||+|+..|+.+++++|+++  
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-d~~g~tpLh~A~~~g~~~~v~~Ll~~--   76 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKE-MNDPSQP-NEEGITALHNAICGANYSIVDFLITA--   76 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHH-SSCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhc-CCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHC--
Confidence            46788998877644   56788899999999999999999975 7788888 99999999999999999999999999  


Q ss_pred             chhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCC-CCCChHHHHH--HHcCcHHHHHHHHhccc-cccCCCC
Q 041247           97 TEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPD-MDGTLPIVRA--AALEQGQMVLLLHKQTK-NSLTDDD  172 (507)
Q Consensus        97 ~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~-~~g~tpL~~A--~~~g~~~~v~~Ll~~~~-~~~~~~~  172 (507)
                      |++++.+|..|+||||+|+..|+.+++++|++.|+++ +.++ .+|.||||+|  +..|+.+++++|++.++ .+..|..
T Consensus        77 ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~  155 (229)
T 2vge_A           77 GANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAI-FATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSG  155 (229)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGG
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-ccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCC
Confidence            8999999999999999999999999999999999998 5554 7999999999  99999999999999999 8888999


Q ss_pred             hhhHHHHHHHcCChHHHHHHHhcCchh--hhhcccCCchHHHHHHhcCCccc
Q 041247          173 CIELLVQLIETGFYVVALQLLRDRPRL--ATKRAENEETALHVLARKDLTST  222 (507)
Q Consensus       173 g~t~L~~A~~~~~~~~v~~Ll~~~~~~--~~~~d~~g~t~Lh~A~~~~~~~~  222 (507)
                      +.++++.++..+..   +.|++. +..  ++.+|.+|+||||+|+..|+.++
T Consensus       156 ~~~~l~~~~~~~~~---~~ll~~-ga~~~~~~~d~~G~TpL~~A~~~g~~~~  203 (229)
T 2vge_A          156 AVYALWDYSAEFGD---ELSFRE-GESVTVLRRDGPEETDWWWAALHGQEGY  203 (229)
T ss_dssp             EEEESSCBCCSSTT---BCCBCT-TCEEEEEESSCTTCSSEEEEEETTEEEE
T ss_pred             chHHHHHHhhcccc---ccCccc-cccccccccCCCcccHHHHHHHcCCcce
Confidence            99999866555433   344544 444  56789999999999999999766

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.96  E-value=3e-28  Score=210.17  Aligned_cols=153  Identities=18%  Similarity=0.196  Sum_probs=110.3

Q ss_pred             cccHHHHHHHcCCChhhHHHHhC-CCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHc
Q 041247            4 ILSGLGWVMTNGIKEAPRVLLSN-GGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQA   82 (507)
Q Consensus         4 g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~   82 (507)
                      |.||||+|+..|+.+++++|+++ +.+++..|..|.||||+ +..|+.+++++|++. +.+++.+ |..|+||||+|+..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~   78 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQ-GASPNVQ-DTSGTSPVHDAART   78 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHC-CCCCCCc-CCCCCCHHHHHHHc
Confidence            45777777777777777777776 22555667777777777 777777777766654 6666666 77777777777777


Q ss_pred             CCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHh
Q 041247           83 NCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHK  162 (507)
Q Consensus        83 g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  162 (507)
                      |+.+++++|+++  |++++.+|..|+||||+|+..|+.+++++|++. +++ +.+|..|.||||+|+..|+.+++++|++
T Consensus        79 ~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~-~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  154 (156)
T 1bd8_A           79 GFLDTLKVLVEH--GADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDL-HRRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             TCHHHHHHHHHT--TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCT-TCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             CcHHHHHHHHHc--CCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence            777777777776  677777777777777777777777777777777 664 6677777777777777777777777765


Q ss_pred             c
Q 041247          163 Q  163 (507)
Q Consensus       163 ~  163 (507)
                      +
T Consensus       155 ~  155 (156)
T 1bd8_A          155 H  155 (156)
T ss_dssp             T
T ss_pred             h
Confidence            3

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=6.5e-28  Score=211.06  Aligned_cols=157  Identities=27%  Similarity=0.264  Sum_probs=147.9

Q ss_pred             cccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHH
Q 041247           34 DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFY  113 (507)
Q Consensus        34 ~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~  113 (507)
                      ...+.++||.|+..|+.+++++|++. +.+++.+ |..|.||||+|+..|+.+++++|+++  +++++..|..|+||||+
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~   86 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMAN-GADVNAE-DASGWTPLHLAAFNGHLEIVEVLLKN--GADVNAVDHAGMTPLRL   86 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHH
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHC-CCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCCCHHHH
Confidence            55678999999999999999988875 7888888 99999999999999999999999999  89999999999999999


Q ss_pred             HHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHH
Q 041247          114 AAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQL  192 (507)
Q Consensus       114 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~L  192 (507)
                      |+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++++ .+..|..|.||+|.|++.|+.+++++|
T Consensus        87 A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L  165 (169)
T 2y1l_E           87 AALFGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL  165 (169)
T ss_dssp             HHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHH
Confidence            99999999999999999997 8899999999999999999999999999999 888999999999999999999999999


Q ss_pred             Hhc
Q 041247          193 LRD  195 (507)
Q Consensus       193 l~~  195 (507)
                      ++.
T Consensus       166 ~~~  168 (169)
T 2y1l_E          166 QKL  168 (169)
T ss_dssp             HTC
T ss_pred             HHc
Confidence            875

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=2e-28  Score=216.55  Aligned_cols=161  Identities=20%  Similarity=0.198  Sum_probs=134.4

Q ss_pred             CcccHHHHHHHcCCChhhHHHHhCC-CCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHH
Q 041247            3 NILSGLGWVMTNGIKEAPRVLLSNG-GANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQ   81 (507)
Q Consensus         3 ~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~   81 (507)
                      ++.++||.|+..|+.+++++|++++ .+.+..|..|.||||+|+..|+.+++++|++. +.+++.+ |..|+||||+|+.
T Consensus         4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~   81 (179)
T 3f6q_A            4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR-GARINVM-NRGDDTPLHLAAS   81 (179)
T ss_dssp             ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCCc-CCCCCCHHHHHHH
Confidence            4668888999999999998888884 44566788888899999998998888877765 7778877 8888899999998


Q ss_pred             cCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHH
Q 041247           82 ANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLH  161 (507)
Q Consensus        82 ~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll  161 (507)
                      .|+.+++++|+++  +++++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.|||++|+..++.+++++|+
T Consensus        82 ~~~~~~v~~Ll~~--g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~~~~~L~  158 (179)
T 3f6q_A           82 HGHRDIVQKLLQY--KADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALV-SICNKYGEMPVDKAKAPLRELLRERAE  158 (179)
T ss_dssp             TTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-SBCCTTSCCGGGGSCHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHc--CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-chhccCCCCcHHHHHHHHHHHHHHHHH
Confidence            8888999988888  7888888888889999998888888999998888886 788888889998888888888888888


Q ss_pred             hccc-ccc
Q 041247          162 KQTK-NSL  168 (507)
Q Consensus       162 ~~~~-~~~  168 (507)
                      +.++ .+.
T Consensus       159 ~~g~~~~~  166 (179)
T 3f6q_A          159 KMGQNLNR  166 (179)
T ss_dssp             HTTCCCSC
T ss_pred             HhhcCccc
Confidence            8887 443

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.95  E-value=4.7e-28  Score=208.90  Aligned_cols=153  Identities=22%  Similarity=0.242  Sum_probs=145.0

Q ss_pred             CCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHH
Q 041247           37 RRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAA  116 (507)
Q Consensus        37 g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~  116 (507)
                      +.||||.|+..|+.++++++++..+.+++.. |..|+||||+ +..|+.+++++|+++  |++++.+|..|+||||+|+.
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~-~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~   77 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDAL-NRFGKTALQV-MMFGSTAIALELLKQ--GASPNVQDTSGTSPVHDAAR   77 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCC-CTTSCCHHHH-SCTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHH
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCcccc-CCCCCcHHHH-HHcCCHHHHHHHHHC--CCCCCCcCCCCCCHHHHHHH
Confidence            5689999999999999999998855678887 9999999999 999999999999999  89999999999999999999


Q ss_pred             cCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHHHhc
Q 041247          117 SGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLLRD  195 (507)
Q Consensus       117 ~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  195 (507)
                      .|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++. . .+..|.+|.||||.|+..|+.+++++|+++
T Consensus        78 ~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A           78 TGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             TTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            99999999999999997 88999999999999999999999999999 6 888999999999999999999999999875

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.95  E-value=2.1e-28  Score=212.57  Aligned_cols=154  Identities=20%  Similarity=0.222  Sum_probs=119.6

Q ss_pred             cCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHH
Q 041247           36 LRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAA  115 (507)
Q Consensus        36 ~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~  115 (507)
                      ...||||.|+..|+.+++++|++ .+.+++.+ |..|+||||+|+. |+.+++++|+++  +.+++.+|..|.||||+|+
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~-~~~~~~~~-~~~g~t~L~~A~~-~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~   78 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQ-NNVNVNAQ-NGFGRTALQVMKL-GNPEIARRLLLR--GANPDLKDRTGFAVIHDAA   78 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTT-SCCCTTCC-CTTSCCHHHHCCS-SCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHH
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHh-CCCCcccc-CccCccHHHHHHc-CcHHHHHHHHHc--CCCCCCCCCCCCCHHHHHH
Confidence            45678888888888888887775 46677776 7778888888877 888888888887  6778888888888888888


Q ss_pred             HcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc--cccCCCChhhHHHHHHHcCChHHHHHHH
Q 041247          116 ASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK--NSLTDDDCIELLVQLIETGFYVVALQLL  193 (507)
Q Consensus       116 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  193 (507)
                      ..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.++  .+..+..|.||||.|+..|+.+++++|+
T Consensus        79 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll  157 (162)
T 1ihb_A           79 RAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQ  157 (162)
T ss_dssp             HHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence            888888888888888776 7777888888888888888888888888777  3566777777777777777777777777


Q ss_pred             hc
Q 041247          194 RD  195 (507)
Q Consensus       194 ~~  195 (507)
                      ++
T Consensus       158 ~~  159 (162)
T 1ihb_A          158 AN  159 (162)
T ss_dssp             HT
T ss_pred             Hh
Confidence            65

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.95  E-value=2.7e-28  Score=212.57  Aligned_cols=158  Identities=25%  Similarity=0.212  Sum_probs=147.9

Q ss_pred             ccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHH
Q 041247           33 EDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFF  112 (507)
Q Consensus        33 ~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh  112 (507)
                      .|.++.|+||.|+..|+.++++++++..+.+++.. +..|+||||+|+..|+.+++++|+++  +.+++.+|..|+||||
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~   80 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDI-EGRQSTPLHFAAGYNRVSVVEYLLQH--GADVHAKDKGGLVPLH   80 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCT-TTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCcccc-ccCCCCHHHHHHHcChHHHHHHHHhc--CCCCCccCCCCCCHHH
Confidence            36788999999999999999999998777777777 88899999999999999999999999  8999999999999999


Q ss_pred             HHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHH
Q 041247          113 YAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQ  191 (507)
Q Consensus       113 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~  191 (507)
                      +|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.++ .+.+|.+|.||+|.|.+ ++.+++++
T Consensus        81 ~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~  158 (165)
T 3twr_A           81 NACSYGHYEVAELLVKHGAVV-NVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDL  158 (165)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHH
T ss_pred             HHHHcCcHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHH
Confidence            999999999999999999997 8899999999999999999999999999999 88899999999999877 88999999


Q ss_pred             HHhc
Q 041247          192 LLRD  195 (507)
Q Consensus       192 Ll~~  195 (507)
                      |+++
T Consensus       159 L~~~  162 (165)
T 3twr_A          159 LRGD  162 (165)
T ss_dssp             HHTC
T ss_pred             Hhhc
Confidence            9876

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=3.1e-28  Score=215.28  Aligned_cols=167  Identities=15%  Similarity=0.101  Sum_probs=152.7

Q ss_pred             ccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHH
Q 041247           35 SLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYA  114 (507)
Q Consensus        35 ~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A  114 (507)
                      .++.++||.|+..|+.++++++++..+.+++.+ |..|+||||+|+..|+.+++++|+++  +++++.+|..|+||||+|
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A   79 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQG-DDHGFSPLHWACREGRSAVVEMLIMR--GARINVMNRGDDTPLHLA   79 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCccccccc-CCCCCCHHHHHHHcCcHHHHHHHHHc--CCCCCCcCCCCCCHHHHH
Confidence            457789999999999999999999888888888 99999999999999999999999999  899999999999999999


Q ss_pred             HHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHHH
Q 041247          115 AASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLL  193 (507)
Q Consensus       115 ~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  193 (507)
                      +..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.++ .+..|.+|.||+|.|+..++.++++.|+
T Consensus        80 ~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~  158 (179)
T 3f6q_A           80 ASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAE  158 (179)
T ss_dssp             HHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHH
Confidence            9999999999999999997 8899999999999999999999999999999 8899999999999999999999999999


Q ss_pred             hcCchhhhhcccC
Q 041247          194 RDRPRLATKRAEN  206 (507)
Q Consensus       194 ~~~~~~~~~~d~~  206 (507)
                      +. +..++..+.+
T Consensus       159 ~~-g~~~~~~~~~  170 (179)
T 3f6q_A          159 KM-GQNLNRIPYK  170 (179)
T ss_dssp             HT-TCCCSCBCCC
T ss_pred             Hh-hcCcccCCcc
Confidence            88 4545444433

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.95  E-value=1.6e-27  Score=204.92  Aligned_cols=150  Identities=24%  Similarity=0.219  Sum_probs=140.4

Q ss_pred             CCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHH
Q 041247           37 RRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAA  116 (507)
Q Consensus        37 g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~  116 (507)
                      ..++||.|+..|+.+++++|++. +.+++ . +..|.||||+|+..|+.+++++|+++  +.+++.+|..|+||||+|+.
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~-g~~~~-~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~   76 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMAN-GAPFT-T-DWLGTSPLHLAAQYGHFSTTEVLLRA--GVSRDARTKVDRTPLHMAAS   76 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHH-TCCCC-C-CTTCCCHHHHHHHHTCHHHHHHHHTT--TCCTTCCCTTCCCHHHHHHH
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHc-CCCCC-c-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHH
Confidence            46899999999999999999986 45554 3 78899999999999999999999998  89999999999999999999


Q ss_pred             cCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHH
Q 041247          117 SGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQL  192 (507)
Q Consensus       117 ~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~L  192 (507)
                      .|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.++ .+.+|.+|.||+|.|+..|+.+++++|
T Consensus        77 ~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           77 EGHANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cChHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            99999999999999997 8899999999999999999999999999998 888999999999999999999999876

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.95  E-value=8.8e-29  Score=229.45  Aligned_cols=176  Identities=15%  Similarity=0.116  Sum_probs=123.4

Q ss_pred             CcccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHc
Q 041247            3 NILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQA   82 (507)
Q Consensus         3 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~   82 (507)
                      .|.||||.|++.|+.+.++.|+++|++++. +..|.||||.|+..|+.++++.|++. +.+++.+ |..|+||||+|+..
T Consensus         4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-d~~g~t~L~~A~~~   80 (239)
T 1ycs_B            4 TGQVSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYE-VDDPSLP-NDEGITALHNAVCA   80 (239)
T ss_dssp             ----------------------------------CHHHHHHHHHHTCHHHHHHHTST-TSSCCCC-CTTSCCHHHHHHHH
T ss_pred             cccccCchhhhhhhHHHHHHHhccCCCccc-CchhhHHHHHHHHcCCHHHHHHHHHc-CCCCCCc-CCCCCCHHHHHHHc
Confidence            589999999999999999999999977764 47789999999999999999988865 6788888 99999999999999


Q ss_pred             CCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCC-hHHHHH--HHcCcHHHHHH
Q 041247           83 NCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGT-LPIVRA--AALEQGQMVLL  159 (507)
Q Consensus        83 g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~-tpL~~A--~~~g~~~~v~~  159 (507)
                      |+.+++++|+++  +++++.+|..|+||||+|+..|+.+++++|+++|+++ +.++..|. ||||+|  +..|+.+++++
T Consensus        81 g~~~~v~~Ll~~--ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~~~t~l~~a~~~~~g~~~~~~~  157 (239)
T 1ycs_B           81 GHTEIVKFLVQF--GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV-FAMTYSDMQTAADKCEEMEEGYTQCSQF  157 (239)
T ss_dssp             TCHHHHHHHHHH--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHCCSSSTTCCCHHHH
T ss_pred             CCHHHHHHHHHc--CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-ceecCCCCcchHHHHHHhhhccHHHHHH
Confidence            999999999999  8999999999999999999999999999999999997 77777766 999999  78899999999


Q ss_pred             HHhccc-cccC---------CCChhhHHHHHHHcC
Q 041247          160 LHKQTK-NSLT---------DDDCIELLVQLIETG  184 (507)
Q Consensus       160 Ll~~~~-~~~~---------~~~g~t~L~~A~~~~  184 (507)
                      |++.++ .+..         +..+.++.+++++.|
T Consensus       158 Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G  192 (239)
T 1ycs_B          158 LYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEG  192 (239)
T ss_dssp             HHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSS
T ss_pred             HHHhhhcccccccceEEEEeccCCCCCCcccccCC
Confidence            999887 4433         334445555444444

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.94  E-value=3.7e-29  Score=230.03  Aligned_cols=186  Identities=19%  Similarity=0.107  Sum_probs=129.7

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHH
Q 041247           69 TNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRA  148 (507)
Q Consensus        69 ~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  148 (507)
                      +..+.||||.|+..|+.+++++|++.  +++++.+|..|+||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|
T Consensus        18 ~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-n~~d~~g~tpLh~A   94 (229)
T 2vge_A           18 RLNPLVLLLDAALTGELEVVQQAVKE--MNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV-NSPDSHGWTPLHCA   94 (229)
T ss_dssp             TSCHHHHHHHHHHHTCHHHHHHHHHH--SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHH
T ss_pred             ccchhHHHHHHHHcCCHHHHHHHHhc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHH
Confidence            45567778888888888888888887  6788888888888888888888888888888888886 77788888888888


Q ss_pred             HHcCcHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHH--HhcCCcccccc
Q 041247          149 AALEQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVL--ARKDLTSTNQN  225 (507)
Q Consensus       149 ~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A--~~~~~~~~~~~  225 (507)
                      +..|+.+++++|++.++ .+..+                                 +.+|+||||+|  +..++      
T Consensus        95 ~~~g~~~~v~~Ll~~ga~~~~~~---------------------------------~~~g~tpL~~A~a~~~~~------  135 (229)
T 2vge_A           95 ASCNDTVICMALVQHGAAIFATT---------------------------------LSDGATAFEKCDPYREGY------  135 (229)
T ss_dssp             HHTTCHHHHHHHHTTTCCTTCCC---------------------------------SSTTCCTGGGCCTTSTTH------
T ss_pred             HHcCCHHHHHHHHHcCCCccccc---------------------------------CCCCCCHHHHHHHHhcCh------
Confidence            88888888888887765 33332                                 23455555555  55554      


Q ss_pred             ccccccccccchhhhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCccc-ccc
Q 041247          226 RRGTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADL-MRK  304 (507)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~-~~~  304 (507)
                                            .+++++|+++++ +++.    .+..+  .||++.++..+.   .+.|++.|+++ ++.
T Consensus       136 ----------------------~~~v~~Ll~~ga-~~~~----~~~~~--~~~l~~~~~~~~---~~~ll~~ga~~~~~~  183 (229)
T 2vge_A          136 ----------------------ADCATYLADVEQ-SMGL----MNSGA--VYALWDYSAEFG---DELSFREGESVTVLR  183 (229)
T ss_dssp             ----------------------HHHHHHHHHHHH-HTTT----SGGGE--EEESSCBCCSST---TBCCBCTTCEEEEEE
T ss_pred             ----------------------HHHHHHHHHcCC-Cccc----ccCCc--hHHHHHHhhccc---cccCccccccccccc
Confidence                                  555555555555 4443    12222  555554333322   24556677773 267


Q ss_pred             cccCCCchHHHHHHhCchHHHHHH
Q 041247          305 CDENGYTIFHVAVLNRLEELFKFI  328 (507)
Q Consensus       305 ~d~~g~t~L~~A~~~~~~~iv~~L  328 (507)
                      +|..|+||||+|+++|+.++|+.+
T Consensus       184 ~d~~G~TpL~~A~~~g~~~~v~~~  207 (229)
T 2vge_A          184 RDGPEETDWWWAALHGQEGYVPRN  207 (229)
T ss_dssp             SSCTTCSSEEEEEETTEEEEEEGG
T ss_pred             cCCCcccHHHHHHHcCCcceeehh
Confidence            888899999999999998887643

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.94  E-value=2.3e-27  Score=219.87  Aligned_cols=179  Identities=15%  Similarity=0.096  Sum_probs=131.7

Q ss_pred             cccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHH
Q 041247           34 DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFY  113 (507)
Q Consensus        34 ~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~  113 (507)
                      +..|.||||.|+..|+.+.++.+++. +.+++.  +..|.||||.|+..|+.+++++|++.  +++++.+|..|+||||+
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~-g~~~~~--~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~d~~g~t~L~~   76 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAH-GMRVKF--NPLPLALLLDSSLEGEFDLVQRIIYE--VDDPSLPNDEGITALHN   76 (239)
T ss_dssp             --------------------------------------CHHHHHHHHHHTCHHHHHHHTST--TSSCCCCCTTSCCHHHH
T ss_pred             CccccccCchhhhhhhHHHHHHHhcc-CCCccc--CchhhHHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHH
Confidence            34689999999999999999988864 777764  57889999999999999999999999  78999999999999999


Q ss_pred             HHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc-cccCCCChh-hHHHHH--HHcCChHHH
Q 041247          114 AAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK-NSLTDDDCI-ELLVQL--IETGFYVVA  189 (507)
Q Consensus       114 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~-t~L~~A--~~~~~~~~v  189 (507)
                      |+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++++ .+..+..|. ||+|.|  +..|+.+++
T Consensus        77 A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~  155 (239)
T 1ycs_B           77 AVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCS  155 (239)
T ss_dssp             HHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHH
T ss_pred             HHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHH
Confidence            99999999999999999997 8999999999999999999999999999999 777777766 999999  888999999


Q ss_pred             HHHHhcCchhhhhc---------ccCCchHHHHHHhcCC
Q 041247          190 LQLLRDRPRLATKR---------AENEETALHVLARKDL  219 (507)
Q Consensus       190 ~~Ll~~~~~~~~~~---------d~~g~t~Lh~A~~~~~  219 (507)
                      ++|++. +...+..         |..++++++++.+.|.
T Consensus       156 ~~Ll~~-~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          156 QFLYGV-QEKMGIMNKGVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             HHHHHH-HHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred             HHHHHh-hhcccccccceEEEEeccCCCCCCcccccCCC
Confidence            999998 4544443         6678888888888876

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.93  E-value=2.9e-26  Score=203.20  Aligned_cols=155  Identities=14%  Similarity=0.105  Sum_probs=122.0

Q ss_pred             cccHHHHHHHcCCChhhHHHHhCCCCCCCcc-ccCCHHhHHHHHcCCH----HHHHHHHhhchhccccccCCCCCcHHHH
Q 041247            4 ILSGLGWVMTNGIKEAPRVLLSNGGANLSED-SLRRLKLYRAALNGDW----AVAKDIYDKYKVEIGQEITNLGNTALHV   78 (507)
Q Consensus         4 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~Lh~Aa~~g~~----~~v~~ll~~~~~~i~~~~~~~g~t~Lh~   78 (507)
                      ++++|+.|++.|+.+.++.+++.+  .+..+ ..|+||||+|+..|+.    +++++|++ .+++++.+ |..|+||||+
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~--~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~-~Gadvn~~-d~~g~TpLh~   81 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKG--YEDKESVLKSNILYDVLRNNNDEARYKISMFLIN-KGADIKSR-TKEGTTLFFP   81 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHS--SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHH-TTCCSSCC-CTTCCCTHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcC--cccccccCCCCHHHHHHHcCCcchHHHHHHHHHH-CCCCCCCC-CCCCCcHHHH
Confidence            467888888888888888888765  23333 6788888888888875    47776665 47888887 8888888888


Q ss_pred             HHHcCC------HHHHHHHHHcCCchhhcccccCCC-cHHHHHHHcC-----cHHHHHHHHh-cCCCCCccCCCCCChHH
Q 041247           79 AAQANC------IDFVKELLKMMSTEDLAKKNKIGC-TAFFYAAASG-----MVEIVEEMMK-GNKDIAMVPDMDGTLPI  145 (507)
Q Consensus        79 Aa~~g~------~e~v~~Ll~~~~~~~~~~~d~~g~-t~Lh~A~~~g-----~~~iv~~Ll~-~~~~~~~~~~~~g~tpL  145 (507)
                      |+..|+      .+++++|+++  |++++.+|..|+ ||||+|+..+     +.+++++|++ +|+++ +.+|..|.|||
T Consensus        82 a~~~~~~~~~~~~~iv~~Ll~~--Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~-~~~d~~G~TpL  158 (186)
T 3t8k_A           82 LFQGGGNDITGTTELCKIFLEK--GADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQL-LIKDKWGLTAL  158 (186)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHT--TCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCT-TCCCTTSCCHH
T ss_pred             HHHcCCcchhhHHHHHHHHHHC--CCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCC-cccCCCCCCHH
Confidence            888876      5778888888  788888888888 8888888743     4568888888 88886 78888888888


Q ss_pred             HHHHHcCcHHHHHHHHhccc
Q 041247          146 VRAAALEQGQMVLLLHKQTK  165 (507)
Q Consensus       146 ~~A~~~g~~~~v~~Ll~~~~  165 (507)
                      |+|++.|+.+++++|.+...
T Consensus       159 ~~A~~~~~~~~v~~L~~~~~  178 (186)
T 3t8k_A          159 EFVKRCQKPIALKMMEDYIK  178 (186)
T ss_dssp             HHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHH
Confidence            88888888888888887654

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.93  E-value=4.5e-26  Score=196.49  Aligned_cols=139  Identities=17%  Similarity=0.081  Sum_probs=77.4

Q ss_pred             CCcccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCc-HHHHHH
Q 041247            2 DNILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNT-ALHVAA   80 (507)
Q Consensus         2 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t-~Lh~Aa   80 (507)
                      +.|.||||+|+..|+.+++++|+++|.+++..|..|+||||+|+ .|+.+++++|++. +.+++.+ |..|+| |||+|+
T Consensus        10 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~-g~~~~~~-d~~g~ttpL~~A~   86 (156)
T 1bi7_B           10 EPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLH-GAEPNCA-DPATLTRPVHDAA   86 (156)
T ss_dssp             CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTT-TCCCCCC-CTTTCCCHHHHHH
T ss_pred             ccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHc-CCCCCCc-CCCCCcHHHHHHH
Confidence            34556666666666666666666666666666666666666653 5666666655543 5555555 566666 666666


Q ss_pred             HcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHH
Q 041247           81 QANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIV  146 (507)
Q Consensus        81 ~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~  146 (507)
                      ..|+.+++++|+++  +++++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||.+
T Consensus        87 ~~~~~~~v~~Ll~~--ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~~~  149 (156)
T 1bi7_B           87 REGFLDTLVVLHRA--GARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGT-RGSNHARIDAAE  149 (156)
T ss_dssp             HHTCHHHHHHHHHH--TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC----------------
T ss_pred             HCCCHHHHHHHHHc--CCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCC-CccCcCcCcccc
Confidence            66666666666666  5666666666666666666666666666666666664 555666666554

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.92  E-value=1.7e-25  Score=188.03  Aligned_cols=132  Identities=15%  Similarity=0.141  Sum_probs=103.5

Q ss_pred             CCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccC-
Q 041247           28 GANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKI-  106 (507)
Q Consensus        28 ~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~-  106 (507)
                      ++.+..+..|.||||+|+..|+.+++++|++. +.+++.+ |..|+||||+|+. |+.+++++|+++  +++++.+|.. 
T Consensus         3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~-~~~~~v~~Ll~~--g~~~~~~~~~~   77 (136)
T 1d9s_A            3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEA-GADPNAL-NRFGRRPIQVMMM-GSAQVAELLLLH--GAEPNCADPAT   77 (136)
T ss_dssp             CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTCCTTTTTSTT-SCHHHHHHHHHH--TCCSSCCBTTT
T ss_pred             CCccCCCCCCccHHHHHHHcCCHHHHHHHHHc-CCCcCCc-CCCCCCHHHHHHc-CCHHHHHHHHHC--CCCCCCcCCCC
Confidence            34556677788888888888888888877754 6777776 7778888888888 888888888887  6778888877 


Q ss_pred             CCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc
Q 041247          107 GCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK  165 (507)
Q Consensus       107 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~  165 (507)
                      |+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|+
T Consensus        78 g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga  135 (136)
T 1d9s_A           78 LTRPVHDAAREGFLDTLVVLHRAGARL-DVCDAWGRLPVDLAEEQGHRDIARYLHAATG  135 (136)
T ss_dssp             TBCHHHHHHHHTCHHHHHHHHHTCCCC-CCCSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            788888888888888888888888776 7777788888888888888888888887664

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.92  E-value=1.8e-25  Score=187.96  Aligned_cols=126  Identities=19%  Similarity=0.151  Sum_probs=119.7

Q ss_pred             CCcccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCC-CCcHHHHHH
Q 041247            2 DNILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNL-GNTALHVAA   80 (507)
Q Consensus         2 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~-g~t~Lh~Aa   80 (507)
                      ++|.||||+|+..|+.+++++|+++|.+++..|..|+||||+|+. |+.+++++|++. +.+++.+ |.. |+||||+|+
T Consensus        10 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~-g~~~~~~-~~~~g~t~L~~A~   86 (136)
T 1d9s_A           10 GSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLH-GAEPNCA-DPATLTRPVHDAA   86 (136)
T ss_dssp             CCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHH-TCCSSCC-BTTTTBCHHHHHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHC-CCCCCCc-CCCCCCCHHHHHH
Confidence            468899999999999999999999999999999999999999999 999999988875 7889888 888 999999999


Q ss_pred             HcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCC
Q 041247           81 QANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKD  132 (507)
Q Consensus        81 ~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~  132 (507)
                      ..|+.+++++|+++  +++++.+|..|+||||+|+..|+.+++++|+++|++
T Consensus        87 ~~~~~~~v~~Ll~~--ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           87 REGFLDTLVVLHRA--GARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             HHTCHHHHHHHHHT--CCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             HcCCHHHHHHHHHc--CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            99999999999999  899999999999999999999999999999998875

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.92  E-value=1.5e-24  Score=179.37  Aligned_cols=126  Identities=29%  Similarity=0.370  Sum_probs=81.5

Q ss_pred             CcccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHc
Q 041247            3 NILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQA   82 (507)
Q Consensus         3 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~   82 (507)
                      +|.||||+|+..|+.+++++|+++|.+++..+..|.||||.|+..|+.+++++|++. +.+++.+ |..|.||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~-~~~g~t~l~~A~~~   78 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAK-DKNGRTPLHLAARN   78 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHc-CCCCccc-CCCCCcHHHHHHHc
Confidence            466677777776766667766666666666666666666666666666666655543 5555555 66666666666666


Q ss_pred             CCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCC
Q 041247           83 NCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKD  132 (507)
Q Consensus        83 g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~  132 (507)
                      |+.+++++|+++  +.+++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus        79 ~~~~~~~~Ll~~--g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           79 GHLEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             TCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             ChHHHHHHHHHc--CCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            666666666666  566666666666666666666666666666666553

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.91  E-value=1.6e-25  Score=198.50  Aligned_cols=163  Identities=20%  Similarity=0.109  Sum_probs=142.7

Q ss_pred             HHHcCCChhhHHHHhCCCCCCC-----------ccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHH
Q 041247           11 VMTNGIKEAPRVLLSNGGANLS-----------EDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVA   79 (507)
Q Consensus        11 A~~~g~~~~v~~Ll~~g~~~~~-----------~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~A   79 (507)
                      |++.|..+.+++|++.+.....           .+..|.||||.|+..|+.++++.|++  +.+++.+ |..|+||||+|
T Consensus         7 aa~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~-d~~g~t~L~~A   83 (183)
T 3deo_A            7 GSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLE--DRDVDAV-DENGRTALLFV   83 (183)
T ss_dssp             EEEEETTTEEEEEEEETTCCCCEEEEGGGSCHHHHHHHHHHHHHHHHTTCHHHHHHHTT--TSCTTCC-CTTSCCHHHHH
T ss_pred             HHHhcCCchhHHHHHHhCCCCccccchhcccccCCCCCCCHHHHHHHcCCHHHHHHHHh--cCCCCCc-CCCCCCHHHHH
Confidence            5567888889999866433322           25689999999999999999998887  7788888 99999999999


Q ss_pred             HHcCCHHHHHHHHHcCCchhhcccc-cCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHH
Q 041247           80 AQANCIDFVKELLKMMSTEDLAKKN-KIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVL  158 (507)
Q Consensus        80 a~~g~~e~v~~Ll~~~~~~~~~~~d-~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~  158 (507)
                      +..|+.+++++|+++  +++++.+| ..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|++.++.    
T Consensus        84 ~~~~~~~~v~~Ll~~--ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~----  156 (183)
T 3deo_A           84 AGLGSDKCVRLLAEA--GADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILKT----  156 (183)
T ss_dssp             HHHTCHHHHHHHHHT--TCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHHHT----
T ss_pred             HHcCCHHHHHHHHHc--CCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCC-cCCCCCCCCHHHHHHHhccC----
Confidence            999999999999999  89999888 89999999999999999999999999997 89999999999999975443    


Q ss_pred             HHHhccccccCCCChhhHHHHHHHcCChHHHHHHHhc
Q 041247          159 LLHKQTKNSLTDDDCIELLVQLIETGFYVVALQLLRD  195 (507)
Q Consensus       159 ~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  195 (507)
                                  ..+.++++.|+..|+.++++.|.++
T Consensus       157 ------------~~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          157 ------------TPKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             ------------CCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             ------------cccccHHHHHHHcCHHHHHHHHHHh
Confidence                        2456899999999999999998765

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.91  E-value=2.5e-25  Score=197.15  Aligned_cols=154  Identities=14%  Similarity=0.051  Sum_probs=137.5

Q ss_pred             cCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCH----HHHHHHHHcCCchhhcccccCCCcHH
Q 041247           36 LRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCI----DFVKELLKMMSTEDLAKKNKIGCTAF  111 (507)
Q Consensus        36 ~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~----e~v~~Ll~~~~~~~~~~~d~~g~t~L  111 (507)
                      .++++|+.|++.|+.+.++.++...   ++...+..|+||||+|+..|+.    +++++|+++  |++++.+|..|+|||
T Consensus         5 ~~~~~l~~Aa~~g~~~~~~~l~~~~---~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~--Gadvn~~d~~g~TpL   79 (186)
T 3t8k_A            5 SEYRTVSAAAMLGTYEDFLELFEKG---YEDKESVLKSNILYDVLRNNNDEARYKISMFLINK--GADIKSRTKEGTTLF   79 (186)
T ss_dssp             HHCSSHHHHHHHSCHHHHHHHHHHS---SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHT--TCCSSCCCTTCCCTH
T ss_pred             ccccHHHHHHHcCCHHHHHHHHhcC---cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHC--CCCCCCCCCCCCcHH
Confidence            3567899999999999999888653   3444236799999999999985    599999999  899999999999999


Q ss_pred             HHHHHcCc------HHHHHHHHhcCCCCCccCCCCCC-hHHHHHHHcC-----cHHHHHHHHh-ccc-cccCCCChhhHH
Q 041247          112 FYAAASGM------VEIVEEMMKGNKDIAMVPDMDGT-LPIVRAAALE-----QGQMVLLLHK-QTK-NSLTDDDCIELL  177 (507)
Q Consensus       112 h~A~~~g~------~~iv~~Ll~~~~~~~~~~~~~g~-tpL~~A~~~g-----~~~~v~~Ll~-~~~-~~~~~~~g~t~L  177 (507)
                      |+|+..|+      .+++++|+++|+++ +.+|..|. ||||+|+..+     +.+++++|++ .|+ .+.+|..|.|||
T Consensus        80 h~a~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL  158 (186)
T 3t8k_A           80 FPLFQGGGNDITGTTELCKIFLEKGADI-TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTAL  158 (186)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCCS-SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHH
T ss_pred             HHHHHcCCcchhhHHHHHHHHHHCCCCC-CccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHH
Confidence            99999886      68899999999997 89999999 9999999944     4679999999 888 999999999999


Q ss_pred             HHHHHcCChHHHHHHHhc
Q 041247          178 VQLIETGFYVVALQLLRD  195 (507)
Q Consensus       178 ~~A~~~~~~~~v~~Ll~~  195 (507)
                      |+|++.|+.++++.|.+.
T Consensus       159 ~~A~~~~~~~~v~~L~~~  176 (186)
T 3t8k_A          159 EFVKRCQKPIALKMMEDY  176 (186)
T ss_dssp             HHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHH
Confidence            999999999999999876

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.91  E-value=2e-24  Score=181.50  Aligned_cols=127  Identities=24%  Similarity=0.263  Sum_probs=103.0

Q ss_pred             ccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHH
Q 041247           33 EDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFF  112 (507)
Q Consensus        33 ~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh  112 (507)
                      ....+.||||+|+..|+.+++++|++. +.+++.+ |..|+||||+|+..|+.+++++|+++  +++++.+|..|+||||
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~d~~g~t~L~   85 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMAN-GADVNAK-DEYGLTPLYLATAHGHLEIVEVLLKN--GADVNAVDAIGFTPLH   85 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHH
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHc-CCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCcCCCCCCCHHH
Confidence            355677888888888888888877765 6777777 78888888888888888888888887  7888888888888888


Q ss_pred             HHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhcc
Q 041247          113 YAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQT  164 (507)
Q Consensus       113 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~  164 (507)
                      +|+..|+.+++++|+++|+++ +.+|.+|.||||+|+..|+.+++++|++.|
T Consensus        86 ~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           86 LAAFIGHLEIAEVLLKHGADV-NAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HHHHcCCHHHHHHHHHcCCCC-cCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            888888888888888888886 778888888888888888888888888764

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.91  E-value=6.8e-25  Score=189.07  Aligned_cols=140  Identities=15%  Similarity=0.132  Sum_probs=75.1

Q ss_pred             ccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCc-HH
Q 041247           33 EDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCT-AF  111 (507)
Q Consensus        33 ~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t-~L  111 (507)
                      .+..|.||||+|+..|+.+++++|++. +.+++.+ |..|+||||+|+ .|+.+++++|+++  +++++.+|..|+| ||
T Consensus         8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~-~~~~~~v~~Ll~~--g~~~~~~d~~g~ttpL   82 (156)
T 1bi7_B            8 SMEPSADWLATAAARGRVEEVRALLEA-GANPNAP-NSYGRRPIQVMM-MGSARVAELLLLH--GAEPNCADPATLTRPV   82 (156)
T ss_dssp             --CCSTTHHHHHHHHTCHHHHHHHHTT-TCCTTCC-CSSSCCTTTSSC-TTCHHHHHHHHTT--TCCCCCCCTTTCCCHH
T ss_pred             CCccchHHHHHHHHcCCHHHHHHHHHc-CCCCCCC-CCCCCCHHHHHH-cCCHHHHHHHHHc--CCCCCCcCCCCCcHHH
Confidence            345556666666666666666655543 5555555 556666666653 5666666666665  5566666666665 66


Q ss_pred             HHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc-cccCCCChhhHHH
Q 041247          112 FYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK-NSLTDDDCIELLV  178 (507)
Q Consensus       112 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~  178 (507)
                      |+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|+ .+..+..|.|+.+
T Consensus        83 ~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~  149 (156)
T 1bi7_B           83 HDAAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAE  149 (156)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHSSCC---------------
T ss_pred             HHHHHCCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccc
Confidence            6666666666666666666664 5556666666666666666666666666655 5555555555544

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.91  E-value=3.2e-24  Score=180.30  Aligned_cols=123  Identities=24%  Similarity=0.336  Sum_probs=79.3

Q ss_pred             cccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcC
Q 041247            4 ILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQAN   83 (507)
Q Consensus         4 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g   83 (507)
                      +.||||+|+..|+.+++++|+++|.+.+..|..|.||||+|+..|+.+++++|++. +.+++.+ |..|+||||+|+..|
T Consensus        14 ~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-d~~g~t~L~~A~~~~   91 (136)
T 2jab_A           14 LGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKN-GADVNAV-DAIGFTPLHLAAFIG   91 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTCCCHHHHHHHHT
T ss_pred             ccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcC-CCCCCCHHHHHHHcC
Confidence            45666666666666666666666666666666666666666666666666655543 5556655 666666666666666


Q ss_pred             CHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcC
Q 041247           84 CIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGN  130 (507)
Q Consensus        84 ~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~  130 (507)
                      +.+++++|+++  +++++.+|..|+||||+|+..|+.+++++|++.|
T Consensus        92 ~~~~v~~Ll~~--g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           92 HLEIAEVLLKH--GADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             CHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             CHHHHHHHHHc--CCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            66666666666  5666666666666666666666666666666543

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.91  E-value=2.9e-25  Score=206.24  Aligned_cols=167  Identities=19%  Similarity=0.067  Sum_probs=142.1

Q ss_pred             cccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcC
Q 041247            4 ILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQAN   83 (507)
Q Consensus         4 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g   83 (507)
                      +.+++.+++..|+.+.++.+...+   ...+..|.||||.|+..|+.++++.|++  +.+++.+ |..|+||||+|+..|
T Consensus        15 ~~~~~l~~~~~g~~~~~~~~~~~~---~~~~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~-d~~g~t~L~~A~~~g   88 (244)
T 3ui2_A           15 GAMEYLIEWKDGHSPSWVPSSYIA---ADVVSEYETPWWTAARKADEQALSQLLE--DRDVDAV-DENGRTALLFVAGLG   88 (244)
T ss_dssp             TEEEEEEEESSCCCCEEEEGGGSC---HHHHHHHHHHHHHHHTTTCHHHHHHTTT--TCCTTCB-CTTSCBHHHHHHHHT
T ss_pred             CccHHHHHHHcCCCcccccccccc---cccccCCCCHHHHHHHcCCHHHHHHHHc--CCCCCCc-CCCCCCHHHHHHHCC
Confidence            345555555666666665554443   2234688999999999999999998887  7788888 999999999999999


Q ss_pred             CHHHHHHHHHcCCchhhcccc-cCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHh
Q 041247           84 CIDFVKELLKMMSTEDLAKKN-KIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHK  162 (507)
Q Consensus        84 ~~e~v~~Ll~~~~~~~~~~~d-~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  162 (507)
                      +.++|++|+++  +++++.+| ..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..++         
T Consensus        89 ~~~~v~~Ll~~--ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~~---------  156 (244)
T 3ui2_A           89 SDKCVRLLAEA--GADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILK---------  156 (244)
T ss_dssp             CHHHHHHHHHT--TCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHHT---------
T ss_pred             CHHHHHHHHHc--CCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHHHh---------
Confidence            99999999999  89999888 88999999999999999999999999997 8899999999999986322         


Q ss_pred             ccccccCCCChhhHHHHHHHcCChHHHHHHHhc
Q 041247          163 QTKNSLTDDDCIELLVQLIETGFYVVALQLLRD  195 (507)
Q Consensus       163 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  195 (507)
                             ...+.+|||+|+..|+.++++.|++.
T Consensus       157 -------~~~~~~~l~~a~~~g~~~iv~~L~~~  182 (244)
T 3ui2_A          157 -------TTPKGNPMQFGRRIGLEKVINVLEGQ  182 (244)
T ss_dssp             -------TCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------ccCCCCHHHHHHHcChHHHHHHHHHh
Confidence                   24578999999999999999999986

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.90  E-value=1.6e-23  Score=173.18  Aligned_cols=125  Identities=30%  Similarity=0.386  Sum_probs=106.3

Q ss_pred             cCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHH
Q 041247           36 LRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAA  115 (507)
Q Consensus        36 ~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~  115 (507)
                      +|+||||.|+..|+.+++++|++. +.+++.. |..|.||||+|+..|+.+++++|+++  +.+++.+|..|+||||+|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~l~~A~   76 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAA   76 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHc-CCCCCCc-CCCCCcHHHHHHHcCcHHHHHHHHHc--CCCCcccCCCCCcHHHHHH
Confidence            478888888888888888888865 6677776 88888888888888888888888888  7888888888888888888


Q ss_pred             HcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc
Q 041247          116 ASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK  165 (507)
Q Consensus       116 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~  165 (507)
                      ..|+.+++++|+++|+++ +.+|..|.|||++|+..|+.+++++|+++|+
T Consensus        77 ~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga  125 (126)
T 1n0r_A           77 RNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA  125 (126)
T ss_dssp             HTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             HcChHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence            888888888888888886 7788888888888888888888888888764

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.90  E-value=9.9e-24  Score=186.91  Aligned_cols=139  Identities=18%  Similarity=0.093  Sum_probs=126.6

Q ss_pred             CcccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHc
Q 041247            3 NILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQA   82 (507)
Q Consensus         3 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~   82 (507)
                      +|.||||+|+..|+.+++++|++ |.+++..|..|+||||+|+..|+.+++++|++. +.+++.+.+..|+||||+|+..
T Consensus        43 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~~g~tpL~~A~~~  120 (183)
T 3deo_A           43 EYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEA-GADLDHRDMRGGLTALHMAAGY  120 (183)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCSSSSCCHHHHHHHT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcCCCCCCCCHHHHHHhc
Confidence            57899999999999999999999 889999999999999999999999999988865 7888888338899999999999


Q ss_pred             CCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHh
Q 041247           83 NCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHK  162 (507)
Q Consensus        83 g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  162 (507)
                      |+.+++++|+++  |++++.+|..|+||||+|+..++.                  ..+.+||++|+..|+.+++++|.+
T Consensus       121 ~~~~~v~~Ll~~--ga~~~~~d~~g~tpl~~A~~~~~~------------------~~~~~~l~~a~~~~~~~i~~~L~~  180 (183)
T 3deo_A          121 VRPEVVEALVEL--GADIEVEDERGLTALELAREILKT------------------TPKGNPMQFGRRIGLEKVINVLEG  180 (183)
T ss_dssp             TCHHHHHHHHHH--TCCTTCCCTTSCCHHHHHHHHHHT------------------CCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred             CcHHHHHHHHHc--CCCCcCCCCCCCCHHHHHHHhccC------------------cccccHHHHHHHcCHHHHHHHHHH
Confidence            999999999999  899999999999999999875432                  236799999999999999999987


Q ss_pred             c
Q 041247          163 Q  163 (507)
Q Consensus       163 ~  163 (507)
                      +
T Consensus       181 ~  181 (183)
T 3deo_A          181 Q  181 (183)
T ss_dssp             C
T ss_pred             h
Confidence            5

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.89  E-value=4.3e-24  Score=179.74  Aligned_cols=128  Identities=18%  Similarity=0.180  Sum_probs=101.4

Q ss_pred             CccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHH
Q 041247           32 SEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAF  111 (507)
Q Consensus        32 ~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~L  111 (507)
                      .+|..|+||||+|+..|+.+++++|++. +.+++.+ |..|+||||+|+..|+.+++++|+++  +++++.+|..|+|||
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~L   80 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQN-GSDPNVK-DHAGWTPLHEACNHGHLKVVELLLQH--KALVNTTGYQNDSPL   80 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSCCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCGGGCCHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcC-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCcccCcCCCCCCHH
Confidence            5677888888888888888888877764 6777776 78888888888888888888888887  788888888888888


Q ss_pred             HHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhcc
Q 041247          112 FYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQT  164 (507)
Q Consensus       112 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~  164 (507)
                      |+|+..|+.+++++|+++|+++ +.+|..|.|||++|+..+..+++++|.+.+
T Consensus        81 ~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~  132 (137)
T 3c5r_A           81 HDAAKNGHVDIVKLLLSYGASR-NAVNIFGLRPVDYTDDESMKSLLLLPEKNE  132 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred             HHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHhhccHHHHHhhccccc
Confidence            8888888888888888888886 778888888888888877777777666544

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.89  E-value=1.4e-23  Score=194.82  Aligned_cols=141  Identities=18%  Similarity=0.084  Sum_probs=128.1

Q ss_pred             CcccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHc
Q 041247            3 NILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQA   82 (507)
Q Consensus         3 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~   82 (507)
                      +|.||||+|+..|+.+++++|++ |.+++..|..|+||||+|+..|+.+++++|++. +.+++.+.+..|+||||+|+..
T Consensus        44 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~g~t~L~~A~~~  121 (244)
T 3ui2_A           44 EYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEA-GADLDHRDMRGGLTALHMAAGY  121 (244)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHT-TCCTTCCCSSSCCCHHHHHHHT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCcCCCCCCCCHHHHHHHc
Confidence            57899999999999999999999 889999999999999999999999999988865 8889888338899999999999


Q ss_pred             CCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHh
Q 041247           83 NCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHK  162 (507)
Q Consensus        83 g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  162 (507)
                      |+.+++++|+++  |++++.+|..|+||||+|+..++                  ...+.|||++|+..|+.+++++|.+
T Consensus       122 g~~~~v~~Ll~~--ga~~~~~d~~g~t~l~~A~~~~~------------------~~~~~~~l~~a~~~g~~~iv~~L~~  181 (244)
T 3ui2_A          122 VRPEVVEALVEL--GADIEVEDERGLTALELAREILK------------------TTPKGNPMQFGRRIGLEKVINVLEG  181 (244)
T ss_dssp             TCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHHHT------------------TCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHC--CCCCCCCCCCCCcHHHHHHHHHh------------------ccCCCCHHHHHHHcChHHHHHHHHH
Confidence            999999999999  89999999999999999986321                  2457899999999999999999998


Q ss_pred             ccc
Q 041247          163 QTK  165 (507)
Q Consensus       163 ~~~  165 (507)
                      ...
T Consensus       182 ~~~  184 (244)
T 3ui2_A          182 QVF  184 (244)
T ss_dssp             HHE
T ss_pred             hcc
Confidence            754

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.88  E-value=1.3e-23  Score=176.76  Aligned_cols=126  Identities=21%  Similarity=0.168  Sum_probs=114.9

Q ss_pred             CCcccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHH
Q 041247            2 DNILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQ   81 (507)
Q Consensus         2 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~   81 (507)
                      .+|.||||+|+..|+.+++++|+++|.+++..|..|.||||+|+..|+.+++++|++. +.+++.+ |..|+||||+|+.
T Consensus         8 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~-~~~g~t~L~~A~~   85 (137)
T 3c5r_A            8 HRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH-KALVNTT-GYQNDSPLHDAAK   85 (137)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CGGGCCHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCcccCc-CCCCCCHHHHHHH
Confidence            4689999999999999999999999999999999999999999999999999988864 8888888 9999999999999


Q ss_pred             cCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCC
Q 041247           82 ANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNK  131 (507)
Q Consensus        82 ~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~  131 (507)
                      .|+.+++++|+++  +++++.+|..|.||||+|+..+..+++++|.+.+.
T Consensus        86 ~~~~~~v~~Ll~~--ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~  133 (137)
T 3c5r_A           86 NGHVDIVKLLLSY--GASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNES  133 (137)
T ss_dssp             TTCHHHHHHHHHT--TCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred             cCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence            9999999999999  89999999999999999999999999988876554

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.88  E-value=2.3e-23  Score=190.65  Aligned_cols=128  Identities=21%  Similarity=0.232  Sum_probs=89.2

Q ss_pred             cccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHH
Q 041247           34 DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFY  113 (507)
Q Consensus        34 ~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~  113 (507)
                      +..|.||||+|+..|+.++++.|++. +.+++.+ |..|+||||+|+..|+.+++++|++.. +++++.+|..|+||||+
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~~-g~~~~~~d~~g~tpL~~  146 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDN-RVGVNGL-DKAGSTALYWACHGGHKDIVEMLFTQP-NIELNQQNKLGDTALHA  146 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHTTST-TCCCCCCCTTSCCHHHH
T ss_pred             ccccccccccccccCcHHHHHHHHhC-CCCcccc-CCCCCCHHHHHHHcCCHHHHHHHHcCC-CCCccccCCCCCCHHHH
Confidence            55677777777777777777766653 5666666 777777777777777777777777764 56777777777777777


Q ss_pred             HHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc
Q 041247          114 AAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK  165 (507)
Q Consensus       114 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~  165 (507)
                      |+..|+.+++++|+++|+++ +.+|..|.|||++|+..|+.++++.|++.++
T Consensus       147 A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~  197 (222)
T 3ehr_A          147 AAWKGYADIVQLLLAKGART-DLRNIEKKLAFDMATNAACASLLKKKQGTDA  197 (222)
T ss_dssp             HHHHTCHHHHHHHHHHTCCS-CCCCTTSCCHHHHCCSHHHHHHHC-------
T ss_pred             HHHcCCHHHHHHHHHcCCCC-ccccCCCCCHHHHhcchhHHHHHHHHhccch
Confidence            77777777777777777775 6777777777777777777777777777766

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.88  E-value=5.2e-23  Score=196.79  Aligned_cols=144  Identities=17%  Similarity=0.150  Sum_probs=122.4

Q ss_pred             cccCCHHhHHHHHcCCHHHHHHHHhhchhccccc-----cCCCCCcHHHHHHHc---CCHHHHHHHHHcCCchhhccccc
Q 041247           34 DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQE-----ITNLGNTALHVAAQA---NCIDFVKELLKMMSTEDLAKKNK  105 (507)
Q Consensus        34 ~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~-----~~~~g~t~Lh~Aa~~---g~~e~v~~Ll~~~~~~~~~~~d~  105 (507)
                      .....++||.|+..|+.+.++.+++. +.+++..     .+..|+||||+|+..   |+.+++++|+++  +++++.+|.
T Consensus       148 ~~~~~~~L~~A~~~g~~~~v~~ll~~-g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~--gadvn~~d~  224 (301)
T 2b0o_E          148 CTPEPQRLWTAICNRDLLSVLEAFAN-GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN--GGHLDAKAA  224 (301)
T ss_dssp             CC-CHHHHHHHHHTTCHHHHHHHHHT-TCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHH--SSCTTCCCT
T ss_pred             cCchHHHHhhhhhccCHHHHHHHHhc-CCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhc--CCCCCCCCC
Confidence            44466899999999999999988854 6777762     288899999999997   899999999999  899999999


Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccccccCCCChhhHHHHHHHcCC
Q 041247          106 IGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTKNSLTDDDCIELLVQLIETGF  185 (507)
Q Consensus       106 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~A~~~~~  185 (507)
                      .|+||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+..|+.+++++|++.++.     .|.||||+|++.|+
T Consensus       225 ~G~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-----~g~tpLh~A~~~g~  298 (301)
T 2b0o_E          225 DGNTALHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQAQAG-----TFAFPLHVDYSWVI  298 (301)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCC-SCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-----TTSSCCC-------
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-----CCCChhHHHHhcCC
Confidence            9999999999999999999999999997 89999999999999999999999999998863     57899999999886


Q ss_pred             h
Q 041247          186 Y  186 (507)
Q Consensus       186 ~  186 (507)
                      .
T Consensus       299 ~  299 (301)
T 2b0o_E          299 S  299 (301)
T ss_dssp             -
T ss_pred             c
Confidence            4

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.88  E-value=1e-22  Score=167.80  Aligned_cols=114  Identities=23%  Similarity=0.254  Sum_probs=77.6

Q ss_pred             cccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHH
Q 041247           34 DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFY  113 (507)
Q Consensus        34 ~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~  113 (507)
                      +..|.||||+|+..|+.+++++|++. +.+++.+ |..|+||||+|+..|+.+++++|+++  +++++.+|..|+||||+
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~-~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~d~~g~tpL~~   79 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAK-GEDVNRT-LEGGRKPLHYAADCGQLEILEFLLLK--GADINAPDKHHITPLLS   79 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHT-TCCTTSC-CTTSSCHHHHHHHTTCHHHHHHHHTT--TCCTTCCCTTSCCHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHc-CCCcCcc-CCCCCcHHHHHHHcCCHHHHHHHHHc--CCCCCcCCCCCCCHHHH
Confidence            34566777777777777777766653 5566665 66777777777777777777777766  66777777777777777


Q ss_pred             HHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcC
Q 041247          114 AAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALE  152 (507)
Q Consensus       114 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g  152 (507)
                      |+..|+.+++++|+++|+++ +.+|.+|.||||+|...+
T Consensus        80 A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~  117 (123)
T 3aaa_C           80 AVYEGHVSCVKLLLSKGADK-TVKGPDGLTAFEATDNQA  117 (123)
T ss_dssp             HHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCCHH
T ss_pred             HHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHhCCHH
Confidence            77777777777777777775 667777777777774333

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.87  E-value=1.2e-22  Score=167.43  Aligned_cols=116  Identities=21%  Similarity=0.139  Sum_probs=106.4

Q ss_pred             CcccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHc
Q 041247            3 NILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQA   82 (507)
Q Consensus         3 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~   82 (507)
                      .|.||||+|+..|+.+++++|+++|.+++..|..|+||||+|+..|+.+++++|++. +.+++.+ |..|+||||+|+..
T Consensus         6 ~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-d~~g~tpL~~A~~~   83 (123)
T 3aaa_C            6 MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK-GADINAP-DKHHITPLLSAVYE   83 (123)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTT-TCCTTCC-CTTSCCHHHHHHHH
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCcC-CCCCCCHHHHHHHc
Confidence            477999999999999999999999999999999999999999999999999988864 7889988 99999999999999


Q ss_pred             CCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHH
Q 041247           83 NCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEI  122 (507)
Q Consensus        83 g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~i  122 (507)
                      |+.+++++|+++  +++++.+|..|.||||+|...+..++
T Consensus        84 ~~~~~v~~Ll~~--ga~~~~~~~~g~t~l~~A~~~~~~~l  121 (123)
T 3aaa_C           84 GHVSCVKLLLSK--GADKTVKGPDGLTAFEATDNQAIKAL  121 (123)
T ss_dssp             TCHHHHHHHHHT--TCCTTCCCTTSCCHHHHCCCHHHHHH
T ss_pred             CCHHHHHHHHHc--CCCCCCcCCCCCCHHHHhCCHHHHHH
Confidence            999999999999  89999999999999999955444443

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.87  E-value=1.5e-22  Score=185.23  Aligned_cols=133  Identities=18%  Similarity=0.181  Sum_probs=112.1

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhc-CCCCCccCCCCCChHHHH
Q 041247           69 TNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKG-NKDIAMVPDMDGTLPIVR  147 (507)
Q Consensus        69 ~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~g~tpL~~  147 (507)
                      +..|+||||+|+..|+.+++++|++.  +.+++.+|..|+||||+|+..|+.+++++|++. ++++ +.+|..|.||||+
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~d~~g~tpL~~  146 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDN--RVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNKLGDTALHA  146 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC-CCCCTTSCCHHHH
T ss_pred             ccccccccccccccCcHHHHHHHHhC--CCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc-cccCCCCCCHHHH
Confidence            67789999999999999999999998  899999999999999999999999999999998 8886 8899999999999


Q ss_pred             HHHcCcHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhccc
Q 041247          148 AAALEQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAE  205 (507)
Q Consensus       148 A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~  205 (507)
                      |+..|+.+++++|++.++ .+.+|.+|.||||+|+..++.++++.+++. +.....++.
T Consensus       147 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~-~~~~~~~~~  204 (222)
T 3ehr_A          147 AAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGT-DAVRTLSNA  204 (222)
T ss_dssp             HHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC---------------
T ss_pred             HHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhcc-chhhhccch
Confidence            999999999999999998 888999999999999999999999999887 333333333

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.86  E-value=1.5e-21  Score=186.61  Aligned_cols=139  Identities=14%  Similarity=0.037  Sum_probs=122.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCchhhcc------cccCCCcHHHHHHHc---CcHHHHHHHHhcCCCCCccCCCCC
Q 041247           71 LGNTALHVAAQANCIDFVKELLKMMSTEDLAK------KNKIGCTAFFYAAAS---GMVEIVEEMMKGNKDIAMVPDMDG  141 (507)
Q Consensus        71 ~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~------~d~~g~t~Lh~A~~~---g~~~iv~~Ll~~~~~~~~~~~~~g  141 (507)
                      ...++||.|+..|+.+.++.|++.  +.+++.      .|..|+||||+|+..   |+.+++++|+++|+++ +.+|.+|
T Consensus       150 ~~~~~L~~A~~~g~~~~v~~ll~~--g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~~G  226 (301)
T 2b0o_E          150 PEPQRLWTAICNRDLLSVLEAFAN--GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADG  226 (301)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHT--TCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCTTC
T ss_pred             chHHHHhhhhhccCHHHHHHHHhc--CCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCCCC
Confidence            345789999999999999999998  788887      689999999999997   8999999999999997 8899999


Q ss_pred             ChHHHHHHHcCcHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCC
Q 041247          142 TLPIVRAAALEQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDL  219 (507)
Q Consensus       142 ~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~  219 (507)
                      .||||+|+..|+.+++++|++.++ .+.+|.+|.||||+|+..++.+++++|++.. .      ..|.||||+|+..|+
T Consensus       227 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~g-a------~~g~tpLh~A~~~g~  298 (301)
T 2b0o_E          227 NTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQ-A------GTFAFPLHVDYSWVI  298 (301)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHH-H------HTTSSCCC-------
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhc-C------CCCCChhHHHHhcCC
Confidence            999999999999999999999999 8899999999999999999999999999873 2      268999999999886

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.83  E-value=6.5e-21  Score=180.13  Aligned_cols=120  Identities=14%  Similarity=0.059  Sum_probs=91.6

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCchh------hcccccCCCcHHHHHHHc---CcHHHHHHHHhcCCCCCccCCCCCCh
Q 041247           73 NTALHVAAQANCIDFVKELLKMMSTED------LAKKNKIGCTAFFYAAAS---GMVEIVEEMMKGNKDIAMVPDMDGTL  143 (507)
Q Consensus        73 ~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~------~~~~d~~g~t~Lh~A~~~---g~~~iv~~Ll~~~~~~~~~~~~~g~t  143 (507)
                      .++|+.|+..|+.+.++.+++.  +.+      ++..|..|+||||+|+..   |+.+++++|+++|+++ +.+|..|.|
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~--g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i-n~~d~~g~T  207 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYAD--GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGST  207 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHT--TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCC
T ss_pred             hhhhhhHhhhcccHHHHHHHHh--hcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc-cccCCCCCC
Confidence            4577778888888777777777  555      344467778888888877   7778888888887776 777777888


Q ss_pred             HHHHHHHcCcHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHHHhc
Q 041247          144 PIVRAAALEQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLLRD  195 (507)
Q Consensus       144 pL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  195 (507)
                      |||+|+..|+.+++++|++.|+ .+.+|.+|.||||.|+..|+.++++.|++.
T Consensus       208 pLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~  260 (278)
T 1dcq_A          208 ALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQA  260 (278)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            8888888888888888888777 777777788888888888888888777776

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.83  E-value=1.1e-20  Score=193.91  Aligned_cols=123  Identities=20%  Similarity=0.238  Sum_probs=82.7

Q ss_pred             HHhHHHHHcCCHHHHHHHHhhchhccccc-----cCCCCCcHHHHHHH---cCCHHHHHHHHHcCCchhhcccccCCCcH
Q 041247           39 LKLYRAALNGDWAVAKDIYDKYKVEIGQE-----ITNLGNTALHVAAQ---ANCIDFVKELLKMMSTEDLAKKNKIGCTA  110 (507)
Q Consensus        39 t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~-----~~~~g~t~Lh~Aa~---~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~  110 (507)
                      +.||.|+..|+.+.++.|++. +.+++.+     .|..|+||||+|++   .|+.++|++|+++  |++++.+|..|+||
T Consensus       134 ~~L~~A~~~g~~~~v~~ll~~-g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~--ga~vn~~d~~g~Tp  210 (497)
T 3lvq_E          134 QRLWTAICNRDLLSVLEAFAN-GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN--GGHLDAKAADGNTA  210 (497)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHT-TCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHH--SCCTTCCCSSSCCH
T ss_pred             HHHHHHHhccCHHHHHHHHhh-cccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHc--CCCCCccCCCCCcH
Confidence            567777777777777766654 4555432     14566777777754   6667777777776  66677777777777


Q ss_pred             HHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc
Q 041247          111 FFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK  165 (507)
Q Consensus       111 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~  165 (507)
                      ||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+..|+.+++++|++.|+
T Consensus       211 Lh~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga  264 (497)
T 3lvq_E          211 LHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQAQA  264 (497)
T ss_dssp             HHHHTTTTCHHHHHHHHHTCCCC-SCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence            77777777777777777777765 6667777777777777777777777777666

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.83  E-value=1.9e-20  Score=145.84  Aligned_cols=92  Identities=32%  Similarity=0.430  Sum_probs=67.8

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHH
Q 041247           71 LGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAA  150 (507)
Q Consensus        71 ~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~  150 (507)
                      +|+||||+|+..|+.+++++|++.  +++++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~   77 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAAR   77 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHc--CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHH
Confidence            367777777777777777777777  6777777777777777777777777777777777775 6777777777777777


Q ss_pred             cCcHHHHHHHHhccc
Q 041247          151 LEQGQMVLLLHKQTK  165 (507)
Q Consensus       151 ~g~~~~v~~Ll~~~~  165 (507)
                      .|+.+++++|++.|+
T Consensus        78 ~~~~~~~~~Ll~~ga   92 (93)
T 1n0q_A           78 NGHLEVVKLLLEAGA   92 (93)
T ss_dssp             TTCHHHHHHHHHTTC
T ss_pred             cCCHHHHHHHHHcCC
Confidence            777777777777653

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.83  E-value=6.2e-20  Score=173.40  Aligned_cols=193  Identities=19%  Similarity=0.132  Sum_probs=136.7

Q ss_pred             cccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc--cccCCCChhhHHHHH
Q 041247          103 KNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK--NSLTDDDCIELLVQL  180 (507)
Q Consensus       103 ~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~--~~~~~~~g~t~L~~A  180 (507)
                      .|..+.++++.+...|+..+.+++...-+.-...+-..+....    .+...-..+++.....  .........++|+.|
T Consensus        62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~----~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a  137 (278)
T 1dcq_A           62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMI----ARKDYITAKYMERRYARKKHADTAAKLHSLCEA  137 (278)
T ss_dssp             TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHH----HHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHH----HHHHHHHHHHHHhhcccccccccchhhhhhhhH
Confidence            4666777777777777776666654432221000111111111    1111111122222211  112223345788888


Q ss_pred             HHcCChHHHHHHHhcCchh-----hhhcccCCchHHHHHHhc---CCccccccccccccccccchhhhhhhhHHHHHHHH
Q 041247          181 IETGFYVVALQLLRDRPRL-----ATKRAENEETALHVLARK---DLTSTNQNRRGTFFQRCFNLGAEKEENKQALELVE  252 (507)
Q Consensus       181 ~~~~~~~~v~~Ll~~~~~~-----~~~~d~~g~t~Lh~A~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  252 (507)
                      +..|+.+.++.+++...+.     .+..|..|+||||+|+..   ++                            .++++
T Consensus       138 ~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~----------------------------~~~v~  189 (278)
T 1dcq_A          138 VKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTS----------------------------LHIVD  189 (278)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTT----------------------------HHHHH
T ss_pred             hhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccch----------------------------HHHHH
Confidence            8888888888888874432     334588999999999999   77                            99999


Q ss_pred             HHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCcccccccccCCCchHHHHHHhCchHHHHHHHhch
Q 041247          253 SLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIFHVAVLNRLEELFKFIYDAK  332 (507)
Q Consensus       253 ~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~g  332 (507)
                      +|+++++ +++.    .+..  |+||||+|+.+|+.+++++|+++|+++ +.+|..|+||||+|+..++.+++++|+++|
T Consensus       190 ~Ll~~ga-~in~----~d~~--g~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g  261 (278)
T 1dcq_A          190 FLVQNSG-NLDK----QTGK--GSTALHYCCLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQAL  261 (278)
T ss_dssp             HHHHHCS-CTTC----CCTT--CCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHCCC-Cccc----cCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCC-CCccCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            9999998 7775    3344  499999999999999999999999998 999999999999999999999999999999


Q ss_pred             hhh
Q 041247          333 SIA  335 (507)
Q Consensus       333 a~~  335 (507)
                      ++.
T Consensus       262 a~~  264 (278)
T 1dcq_A          262 SGR  264 (278)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            864

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.83  E-value=2.2e-20  Score=182.59  Aligned_cols=144  Identities=17%  Similarity=0.151  Sum_probs=67.8

Q ss_pred             CCCcHHHHHHHc-CCHHHHHHHHHcCCchhhcccc--cCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHH
Q 041247           71 LGNTALHVAAQA-NCIDFVKELLKMMSTEDLAKKN--KIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVR  147 (507)
Q Consensus        71 ~g~t~Lh~Aa~~-g~~e~v~~Ll~~~~~~~~~~~d--~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~  147 (507)
                      .+.|+||.|+.. |+.++++.|+++  +++++..|  ..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+
T Consensus       198 ~~~t~L~~Aa~~~g~~~~v~~LL~~--Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~TpLh~  274 (368)
T 3jue_A          198 HPGALLFRASGHPPSLPTMADALAH--GADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPLHH  274 (368)
T ss_dssp             CHHHHHHHHTSSSCCHHHHHHHHHT--TCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHH
T ss_pred             CCCcHHHHHHHccCCHHHHHHHHHc--CCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHH
Confidence            344555555555 555555555555  45555554  45555555555555555555555555554 4555555555555


Q ss_pred             HHHcCcHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHHHhcCc--hhhhhcccCCchHHHHHHhc
Q 041247          148 AAALEQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLLRDRP--RLATKRAENEETALHVLARK  217 (507)
Q Consensus       148 A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~--~~~~~~d~~g~t~Lh~A~~~  217 (507)
                      |+..|+.+++++|+++++ .+..|.+|.||||+|+..++.+++++|++...  ......+..+.|+++++...
T Consensus       275 A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~  347 (368)
T 3jue_A          275 ATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF  347 (368)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred             HHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence            555555555555555555 55555555555555555555555555554411  11122344455666555443

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.82  E-value=1.7e-20  Score=183.33  Aligned_cols=147  Identities=16%  Similarity=0.128  Sum_probs=115.5

Q ss_pred             ccccCCHHhHHHHHc-CCHHHHHHHHhhchhccccccC--CCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCc
Q 041247           33 EDSLRRLKLYRAALN-GDWAVAKDIYDKYKVEIGQEIT--NLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCT  109 (507)
Q Consensus        33 ~~~~g~t~Lh~Aa~~-g~~~~v~~ll~~~~~~i~~~~~--~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t  109 (507)
                      .+..+.|+||.|+.. |+.++++.|++ ++.+++.. +  ..|.||||+|+..|+.+++++|+++  +++++.+|..|+|
T Consensus       195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~-~Gadvn~~-~~~~~g~TpLh~Aa~~g~~~iv~~LL~~--Gadvn~~d~~G~T  270 (368)
T 3jue_A          195 GSLHPGALLFRASGHPPSLPTMADALA-HGADVNWV-NGGQDNATPLIQATAANSLLACEFLLQN--GANVNQADSAGRG  270 (368)
T ss_dssp             --CCHHHHHHHHTSSSCCHHHHHHHHH-TTCCTTCC-CTTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCC
T ss_pred             ccCCCCcHHHHHHHccCCHHHHHHHHH-cCCCCCcc-ccccCCCCHHHHHHHCCCHHHHHHHHHc--CCCCCCCCCCCCC
Confidence            345677899999999 99999998886 47888877 6  7899999999999999999999999  8999999999999


Q ss_pred             HHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc----cccCCCChhhHHHHHHHcC
Q 041247          110 AFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK----NSLTDDDCIELLVQLIETG  184 (507)
Q Consensus       110 ~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~----~~~~~~~g~t~L~~A~~~~  184 (507)
                      |||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.+.    ....+..+.|+++.+....
T Consensus       271 pLh~A~~~g~~~~v~~LL~~Gad~-~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~  348 (368)
T 3jue_A          271 PLHHATILGHTGLACLFLKRGADL-GARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFS  348 (368)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-----------------------
T ss_pred             HHHHHHHcCcHHHHHHHHHCcCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHH
Confidence            999999999999999999999997 8899999999999999999999999998875    3345667788888776543

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.82  E-value=5.9e-20  Score=143.03  Aligned_cols=91  Identities=31%  Similarity=0.433  Sum_probs=54.4

Q ss_pred             CCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHH
Q 041247           37 RRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAA  116 (507)
Q Consensus        37 g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~  116 (507)
                      |+||||+|+..|+.+++++|++. +.+++.+ |..|+||||+|+..|+.+++++|+++  +++++.+|..|+||||+|+.
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~-g~~~n~~-d~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~d~~g~t~l~~A~~   77 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEA-GADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAAR   77 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHc-CCCCccc-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCCCHHHHHHH
Confidence            45556666666666655555543 4555555 55666666666666666666666665  56666666666666666666


Q ss_pred             cCcHHHHHHHHhcCC
Q 041247          117 SGMVEIVEEMMKGNK  131 (507)
Q Consensus       117 ~g~~~iv~~Ll~~~~  131 (507)
                      .|+.+++++|+++|+
T Consensus        78 ~~~~~~~~~Ll~~ga   92 (93)
T 1n0q_A           78 NGHLEVVKLLLEAGA   92 (93)
T ss_dssp             TTCHHHHHHHHHTTC
T ss_pred             cCCHHHHHHHHHcCC
Confidence            666666666666554

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.80  E-value=1.7e-19  Score=184.99  Aligned_cols=121  Identities=14%  Similarity=0.056  Sum_probs=80.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCchhhccc------ccCCCcHHHHHHH---cCcHHHHHHHHhcCCCCCccCCCCCC
Q 041247           72 GNTALHVAAQANCIDFVKELLKMMSTEDLAKK------NKIGCTAFFYAAA---SGMVEIVEEMMKGNKDIAMVPDMDGT  142 (507)
Q Consensus        72 g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~------d~~g~t~Lh~A~~---~g~~~iv~~Ll~~~~~~~~~~~~~g~  142 (507)
                      ..+.||.|+..|+.+.|+.|++.  |++++.+      |..|+||||+|+.   .|+.+++++|+++|+++ +.+|.+|.
T Consensus       132 ~~~~L~~A~~~g~~~~v~~ll~~--g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~v-n~~d~~g~  208 (497)
T 3lvq_E          132 EPQRLWTAICNRDLLSVLEAFAN--GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGN  208 (497)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHHHT--TCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCT-TCCCSSSC
T ss_pred             cHHHHHHHHhccCHHHHHHHHhh--cccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCC-CccCCCCC
Confidence            34566666666666666666666  5666555      5666666666644   66666666666666665 66666666


Q ss_pred             hHHHHHHHcCcHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHHHhc
Q 041247          143 LPIVRAAALEQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLLRD  195 (507)
Q Consensus       143 tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  195 (507)
                      ||||+|+..|+.+++++|+++|+ .+..|.+|.||||+|+..|+.++++.|++.
T Consensus       209 TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~  262 (497)
T 3lvq_E          209 TALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQA  262 (497)
T ss_dssp             CHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            66666666666666666666666 666666666666666666666666666665

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.79  E-value=1.1e-19  Score=147.55  Aligned_cols=104  Identities=28%  Similarity=0.309  Sum_probs=56.1

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHH
Q 041247           69 TNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRA  148 (507)
Q Consensus        69 ~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  148 (507)
                      |.+|+||||+|+..|+.+++++|+++  +.+++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|
T Consensus         6 d~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~tpl~~A   82 (115)
T 2l6b_A            6 SKDGNTPLHNAAKNGHAEEVKKLLSK--GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV-NARSKDGNTPEHLA   82 (115)
T ss_dssp             SCSSCCHHHHHHHHTCHHHHHHHTTT--TCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT-TCCCTTCCCTTHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCCHHHHH
Confidence            45555555555555555555555555  4555555555555555555555555555555555554 45555555555555


Q ss_pred             HHcCcHHHHHHHHhccc-cccCCCChhh
Q 041247          149 AALEQGQMVLLLHKQTK-NSLTDDDCIE  175 (507)
Q Consensus       149 ~~~g~~~~v~~Ll~~~~-~~~~~~~g~t  175 (507)
                      +..|+.+++++|+++|+ .+..+..|.+
T Consensus        83 ~~~~~~~~~~~Ll~~ga~~n~~~~~~~~  110 (115)
T 2l6b_A           83 KKNGHHEIVKLLDAKGADVNARSWGSSH  110 (115)
T ss_dssp             HTTTCHHHHHHHHTTSSSHHHHSCCCC-
T ss_pred             HHCCCHHHHHHHHHcCCCCCcCCccccc
Confidence            55555555555555554 4444444433

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.78  E-value=1.9e-19  Score=146.10  Aligned_cols=107  Identities=26%  Similarity=0.277  Sum_probs=77.1

Q ss_pred             ccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHH
Q 041247           33 EDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFF  112 (507)
Q Consensus        33 ~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh  112 (507)
                      +|..|.||||+|+..|+.+++++|++. +.+++.+ |..|+||||+|+..|+.+++++|+++  +++++.+|..|+||||
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~-d~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~d~~g~tpl~   80 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSK-GADVNAR-SKDGNTPLHLAAKNGHAEIVKLLLAK--GADVNARSKDGNTPEH   80 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTT-TCCSSCC-CSSSCCTTHHHHTTTCHHHHHHHTTT--TCCTTCCCTTCCCTTH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCc-CCCCCCHHHHHHHcCcHHHHHHHHHc--CCCCcccCCCCCCHHH
Confidence            466777777777777777777766654 5666666 77777777777777777777777777  6777777777777777


Q ss_pred             HHHHcCcHHHHHHHHhcCCCCCccCCCCCChH
Q 041247          113 YAAASGMVEIVEEMMKGNKDIAMVPDMDGTLP  144 (507)
Q Consensus       113 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tp  144 (507)
                      +|+..|+.+++++|+++|+++ +.++..|.+|
T Consensus        81 ~A~~~~~~~~~~~Ll~~ga~~-n~~~~~~~~~  111 (115)
T 2l6b_A           81 LAKKNGHHEIVKLLDAKGADV-NARSWGSSHH  111 (115)
T ss_dssp             HHHTTTCHHHHHHHHTTSSSH-HHHSCCCC--
T ss_pred             HHHHCCCHHHHHHHHHcCCCC-CcCCcccccc
Confidence            777777777777777777775 6667777665

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.73  E-value=1.1e-17  Score=134.56  Aligned_cols=89  Identities=25%  Similarity=0.246  Sum_probs=70.2

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHH
Q 041247           69 TNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRA  148 (507)
Q Consensus        69 ~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  148 (507)
                      |.+|+||||+|+..|+.+++++|+++  +++++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|
T Consensus        21 ~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A   97 (110)
T 2zgd_A           21 GSDLGKKLLEAARAGQDDEVRILMAN--GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV-XAQDKFGKTAFDIS   97 (110)
T ss_dssp             -CCHHHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred             CCccchHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccccCCCcHHHHH
Confidence            67778888888888888888888877  6777777888888888888888888888888888775 77777888888888


Q ss_pred             HHcCcHHHHHHH
Q 041247          149 AALEQGQMVLLL  160 (507)
Q Consensus       149 ~~~g~~~~v~~L  160 (507)
                      +..|+.+++++|
T Consensus        98 ~~~~~~~~~~~L  109 (110)
T 2zgd_A           98 IDNGNEDLAEIL  109 (110)
T ss_dssp             HHHTCHHHHHHH
T ss_pred             HHcCCHHHHHHh
Confidence            888888877765

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.69  E-value=7e-17  Score=129.76  Aligned_cols=91  Identities=26%  Similarity=0.322  Sum_probs=82.0

Q ss_pred             CccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHH
Q 041247           32 SEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAF  111 (507)
Q Consensus        32 ~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~L  111 (507)
                      ..|.+|.|+||+|+..|+.+++++|++. +.+++.+ |..|+||||+|+..|+.+++++|+++  +++++.+|..|+|||
T Consensus        19 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~i~~~-d~~g~tpLh~A~~~~~~~~v~~Ll~~--ga~~~~~d~~g~tpl   94 (110)
T 2zgd_A           19 HMGSDLGKKLLEAARAGQDDEVRILMAN-GADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEA--GADVXAQDKFGKTAF   94 (110)
T ss_dssp             ---CCHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHH
T ss_pred             ccCCccchHHHHHHHcCCHHHHHHHHHc-CCCCCcc-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCccccccCCCcHH
Confidence            4578899999999999999999988865 7888888 89999999999999999999999999  899999999999999


Q ss_pred             HHHHHcCcHHHHHHH
Q 041247          112 FYAAASGMVEIVEEM  126 (507)
Q Consensus       112 h~A~~~g~~~iv~~L  126 (507)
                      |+|+..|+.+++++|
T Consensus        95 ~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           95 DISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHHTCHHHHHHH
T ss_pred             HHHHHcCCHHHHHHh
Confidence            999999999999987

>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X

Probab=84.23  E-value=7.3  Score=36.91  Aligned_cols=214  Identities=14%  Similarity=0.074  Sum_probs=117.7

Q ss_pred             cccHHHHHHHcCCChhhHHHHhC-CCCC--CCccccCCHHhHHHHHcCCHHHHHHHHhhc-hhccccccCCCCCcHHHHH
Q 041247            4 ILSGLGWVMTNGIKEAPRVLLSN-GGAN--LSEDSLRRLKLYRAALNGDWAVAKDIYDKY-KVEIGQEITNLGNTALHVA   79 (507)
Q Consensus         4 g~t~L~~A~~~g~~~~v~~Ll~~-g~~~--~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~-~~~i~~~~~~~g~t~Lh~A   79 (507)
                      |.|||..-.+.+...  ++.++. .+..  ...|.+|.-.+......++.+..+.+.++- +..+.-..|..|+..+...
T Consensus         3 ~~~~l~e~~r~~~~~--~~~l~~~~g~i~~la~dq~gsR~lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQkl   80 (351)
T 3gvo_A            3 GRSRLLEDFRNNRFP--NLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKF   80 (351)
T ss_dssp             CCCHHHHHHHTTCCT--TCCGGGGTTCHHHHHTSHHHHHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHH
T ss_pred             CccHHHHHHhCCCCC--CcCHHHHHhHHHHHhcCCcchHHHHHHHhhCCHHHHHHHHHHHHHhHHHHHhChhhhHHHHHH
Confidence            567777776666432  222221 1111  134777888888888888887777666542 2222223488899888888


Q ss_pred             HHcCCHHHHHHHHHcCCchhh-cccccCCCcHHHHHHHcCcHHHHHHHHhc-CCC-CCccCCCCCChHHHHHHHcCcHHH
Q 041247           80 AQANCIDFVKELLKMMSTEDL-AKKNKIGCTAFFYAAASGMVEIVEEMMKG-NKD-IAMVPDMDGTLPIVRAAALEQGQM  156 (507)
Q Consensus        80 a~~g~~e~v~~Ll~~~~~~~~-~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~-~~~-~~~~~~~~g~tpL~~A~~~g~~~~  156 (507)
                      ...+..+....+++...|.-+ -..|.+|.-.+..+......+-...+++. .+. ..-..|.+|...+......+..+.
T Consensus        81 le~~~~~~~~~i~~~i~g~~~~l~~~~~G~rvvQk~le~~~~~~~~~i~~el~~~~~~L~~d~~Gn~ViQk~l~~~~~~~  160 (351)
T 3gvo_A           81 FEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQS  160 (351)
T ss_dssp             HHHCCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGG
T ss_pred             HhhCCHHHHHHHHHHHHhhHHHHhhCHHhHHHHHHHHHhCCHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHhCCHHH
Confidence            888888877777765322211 13466676666666665555444444432 111 112346666666666655555444


Q ss_pred             HHHHHhccc----cccCCCChhhHHHHHHHcCChHHHHHHHhc--CchhhhhcccCCchHHHHHHhcCC
Q 041247          157 VLLLHKQTK----NSLTDDDCIELLVQLIETGFYVVALQLLRD--RPRLATKRAENEETALHVLARKDL  219 (507)
Q Consensus       157 v~~Ll~~~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~d~~g~t~Lh~A~~~~~  219 (507)
                      .+.+++.-.    .-..+..|...+..+.+....+-...+++.  .....-..|..|+-.+......+.
T Consensus       161 ~~~i~~~~~~~~~~ls~~~~G~~Vvq~~le~~~~~~~~~ii~~l~~~~~~L~~d~~Gn~ViQ~~l~~~~  229 (351)
T 3gvo_A          161 LQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGR  229 (351)
T ss_dssp             THHHHHHTTTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHCCHHHHHHHHHHHhhhHHhcCCCchHHHHHHHHHHhCc
Confidence            444443322    222456666666666665554333333322  011122467777777777776665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	507
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-12
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-11
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-11
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-10
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	9e-10
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-08
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-09
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	4e-08
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	9e-06
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	5e-09
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	5e-07
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	6e-09
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-08
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-05
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-04
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	0.001
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	7e-08
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	6e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	8e-08
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	6e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	0.002
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	9e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	0.003
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	7e-07
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-06
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-05
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	5e-06
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	9e-06
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	0.003
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	0.003
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	0.004

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.0 bits (154), Expect = 5e-12
 Identities = 49/272 (18%), Positives = 82/272 (30%), Gaps = 25/272 (9%)

Query: 68  ITNLGNTALHVAAQANCIDFVKELLKMM-STEDLAKKNKIGCTAFFYAAASGMVEIVEEM 126
           +T  G+TALH+A       F+  LL      E L  +N +G TA   AA  G    VE++
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64

Query: 127 MKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTKNSLTDDDCIELLVQLIETGFY 186
                 + +      T   + A  +       +L +   +   D     L      T   
Sbjct: 65  YAAGAGVLVAERGGHTALHL-ACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDT 123

Query: 187 VVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKEENKQ 246
             A   +      +    ENEE       R  L + N +          +  AE     +
Sbjct: 124 SHAPAAV-----DSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLR 178

Query: 247 ALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCD 306
                 +        +                +  A +      L +L++  AD   +  
Sbjct: 179 DAGADLNKPEPTCGRTP---------------LHLAVEAQAASVLELLLKAGADPTAR-M 222

Query: 307 ENGYTIFHVAVLNRLEELFKFI--YDAKSIAD 336
             G T    A+L     L + +  + A    D
Sbjct: 223 YGGRTPLGSALLRPNPILARLLRAHGAPEPED 254

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.1 bits (152), Expect = 2e-11
 Identities = 61/369 (16%), Positives = 107/369 (28%), Gaps = 51/369 (13%)

Query: 14  NGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEI---TN 70
            G     + LL  G +    +      L+ AA  G   VAK     Y ++   ++     
Sbjct: 10  MGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAK-----YLLQNKAKVNAKAK 64

Query: 71  LGNTALHVAAQANCIDFVKELLKMMSTE-------------------------------D 99
              T LH AA+    + VK LL+  +                                  
Sbjct: 65  DDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEAS 124

Query: 100 LAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLL 159
            A   K G T    AA  G V + E +++ +         +G  P+  A       +V L
Sbjct: 125 QACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP-NAAGKNGLTPLHVAVHHNNLDIVKL 183

Query: 160 LHKQTKNSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDL 219
           L  +  +  +        + +      V   + L      A   +    T LH+ A++  
Sbjct: 184 LLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGH 243

Query: 220 TSTNQNRRGTFFQRCFNLGAEKEENKQALELVE---SLWTEVVLSSESVSEISKLIARPT 276
                        +  N     +     L LV     +    VL    V   +      T
Sbjct: 244 AEMVAL----LLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYT 299

Query: 277 RLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIFHVAVLNRLEELFKFIYDAKSIAD 336
            L          + L+  + ++   +    + GY+  H A      ++   +      A 
Sbjct: 300 PLHVA--SHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG--AS 355

Query: 337 LMVDSNDGE 345
               S+DG 
Sbjct: 356 PNEVSSDGT 364

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.1 bits (152), Expect = 3e-11
 Identities = 52/304 (17%), Positives = 100/304 (32%), Gaps = 20/304 (6%)

Query: 41  LYRAALNGDWAVAKDIYDKYKVEIGQEI---TNLGNTALHVAAQANCIDFVKELLKMMST 97
           L+ A+  G   + K++     ++ G           T LH+AA+A   +  K LL+  + 
Sbjct: 4   LHVASFMGHLPIVKNL-----LQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKA- 57

Query: 98  EDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMV 157
             +  K K   T    AA  G   +V+ +++ N +  +      T   + A       ++
Sbjct: 58  -KVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVL 116

Query: 158 LLLHKQTKNSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARK 217
            LL K+   +         L    + G   VA +LL +R        +N  T LHV    
Sbjct: 117 ALLEKEASQACMTKKGFTPLHVAAKYGKVRVA-ELLLERDAHPNAAGKNGLTPLHVAVHH 175

Query: 218 DLTSTNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTE---VVLSSESVSEISKLIAR 274
           +    N +       R  +  +        L +            L     S  ++ +  
Sbjct: 176 N----NLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQG 231

Query: 275 PTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIFHVAVLNRLEELFKFIYDAKSI 334
            T L    A +     ++ L+          +++G T  H+        +   +     +
Sbjct: 232 VTPLHL--AAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM 289

Query: 335 ADLM 338
            D  
Sbjct: 290 VDAT 293

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (140), Expect = 7e-10
 Identities = 52/267 (19%), Positives = 90/267 (33%), Gaps = 12/267 (4%)

Query: 74  TALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDI 133
           T LHVA+    +  VK LL+  +       N    T    AA +G  E+ + +++    +
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGA--SPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV 59

Query: 134 AMVPDMDGTLPIVRAAALEQGQMVLLLHKQTKNSLTDDDCIELLVQLIETGFYVVALQLL 193
                 D   P+  AA +    MV LL +   N           + +     +V  +  L
Sbjct: 60  -NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLAL 118

Query: 194 RDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKEENKQALEL-VE 252
            ++        +   T LHV A+       +       +R  +  A  +     L + V 
Sbjct: 119 LEKEASQACMTKKGFTPLHVAAKYGKVRVAE----LLLERDAHPNAAGKNGLTPLHVAVH 174

Query: 253 SLWTEVV--LSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGY 310
               ++V  L     S  S      T L    AK+  V     L+ +Y          G 
Sbjct: 175 HNNLDIVKLLLPRGGSPHSPAWNGYTPLHIA-AKQNQVEVARSLL-QYGGSANAESVQGV 232

Query: 311 TIFHVAVLNRLEELFKFIYDAKSIADL 337
           T  H+A      E+   +   ++  +L
Sbjct: 233 TPLHLAAQEGHAEMVALLLSKQANGNL 259

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (140), Expect = 9e-10
 Identities = 29/133 (21%), Positives = 49/133 (36%), Gaps = 4/133 (3%)

Query: 8   LGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQE 67
           L  V   G      VL+ +G    +   +    L+ A+  G+  + K +         + 
Sbjct: 268 LHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAK- 326

Query: 68  ITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMM 127
            T LG + LH AAQ    D V  LLK  +     + +  G T    A   G + + + + 
Sbjct: 327 -TKLGYSPLHQAAQQGHTDIVTLLLKNGA--SPNEVSSDGTTPLAIAKRLGYISVTDVLK 383

Query: 128 KGNKDIAMVPDMD 140
               + + V   D
Sbjct: 384 VVTDETSFVLVSD 396

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (127), Expect = 3e-08
 Identities = 50/341 (14%), Positives = 106/341 (31%), Gaps = 15/341 (4%)

Query: 8   LGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQE 67
           L      G     ++LL N  AN +  +         A             + +      
Sbjct: 70  LHCAARIGHTNMVKLLLENN-ANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQ-AC 127

Query: 68  ITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMM 127
           +T  G T LHVAA+   +   + LL+  +        K G T    A     ++IV+ ++
Sbjct: 128 MTKKGFTPLHVAAKYGKVRVAELLLERDA--HPNAAGKNGLTPLHVAVHHNNLDIVKLLL 185

Query: 128 KGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTKNSLTDDDCIELLVQLIETGFYV 187
                    P  +G  P+  AA   Q ++   L +   ++  +       + L     + 
Sbjct: 186 PRGGSPH-SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHA 244

Query: 188 VALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKEENKQA 247
             + LL  +        ++  T LH++A++              +    + A        
Sbjct: 245 EMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVAD----VLIKHGVMVDATTRMGYTP 300

Query: 248 LELVESLWTEVVLSSESVSEISKLIARP---TRLIFDAAKRGNVLFLLILIREYADLMRK 304
           L +        ++      +           + L   AA++G+   + +L++  A     
Sbjct: 301 LHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQ-AAQQGHTDIVTLLLKNGASPNEV 359

Query: 305 CDENGYTIFHVAVLNRLEELFKFI-YDAKSIADLMVDSNDG 344
              +G T   +A       +   +       + ++V     
Sbjct: 360 -SSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHR 399

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.6 bits (135), Expect = 2e-09
 Identities = 31/229 (13%), Positives = 68/229 (29%), Gaps = 21/229 (9%)

Query: 8   LGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQE 67
           L  ++   I+E P  L ++     SE      +    + +       D +   ++ +   
Sbjct: 43  LQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIP 102

Query: 68  ITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGM---VEIVE 124
           +   GNT LH       ++ VK L+K  S  +    + +G +    A  S         E
Sbjct: 103 VDEHGNTPLHWLTSIANLELVKHLVKHGS--NRLYGDNMGESCLVKAVKSVNNYDSGTFE 160

Query: 125 EMMKGNKDIAMVPDMDGTLPIVRAAA--------------LEQGQMVLLLHKQTKNSLTD 170
            ++       ++ D      +                   L+     ++  +        
Sbjct: 161 ALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGT 220

Query: 171 DDCIELLVQLIETGFYVVA--LQLLRDRPRLATKRAENEETALHVLARK 217
           ++               +   L L      +   +  N +T L++ AR 
Sbjct: 221 NEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARL 269

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.4 bits (124), Expect = 4e-08
 Identities = 17/112 (15%), Positives = 38/112 (33%), Gaps = 4/112 (3%)

Query: 6   SGLGWVMTNGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAKDIYDKYKVEI 64
           +G        +      ++      +    + +  K          ++ +++  K+ +  
Sbjct: 191 TGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIAN 250

Query: 65  G-QEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAA 115
                 + G+T L++AA+   I  V  LL   +  D    NK G     + A
Sbjct: 251 MLNAQDSNGDTCLNIAARLGNISIVDALLDYGA--DPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.0 bits (105), Expect = 9e-06
 Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 9/117 (7%)

Query: 41  LYRAALNGDWAVAKDIYDKYKVEIGQE-------ITNLGNTALHVAAQANCIDFVKEL-L 92
           +  + + G  A AK   D     I ++        TN   +  +          ++ L L
Sbjct: 185 IITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDL 244

Query: 93  KMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAA 149
           K +    L  ++  G T    AA  G + IV+ ++    D   + +  G  P+   A
Sbjct: 245 KWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADP-FIANKSGLRPVDFGA 300

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 55.7 bits (133), Expect = 5e-09
 Identities = 19/139 (13%), Positives = 44/139 (31%), Gaps = 7/139 (5%)

Query: 41  LYRAALNGDWAVAKDIYDKYKVEIGQEI---TNLGNTALHVAAQANCIDFVKELLKMMST 97
            + AA+ G  +          +   + +         A  +AA+   +  +  L ++  T
Sbjct: 94  CFVAAITGCSSALD--TLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPT 151

Query: 98  EDLAKKNKIGCTAFFYAAASGMVEIVEEMMK--GNKDIAMVPDMDGTLPIVRAAALEQGQ 155
           E +A        AF  AA +G + ++  + +    +  AM+   +       A       
Sbjct: 152 EIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHN 211

Query: 156 MVLLLHKQTKNSLTDDDCI 174
           ++  L          +   
Sbjct: 212 VINFLLDCPVMLAYAEIHE 230

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 49.5 bits (117), Expect = 5e-07
 Identities = 27/218 (12%), Positives = 54/218 (24%), Gaps = 24/218 (11%)

Query: 23  LLSNGGANLSE-DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQ 81
           LL      +    +        AA NG   V   + +    EI   I      A  +AA+
Sbjct: 111 LLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAE 170

Query: 82  ANCIDFVKELLKM-MSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMD 140
              +  +  L ++  +      + +      + A   G   ++  ++     +A   ++ 
Sbjct: 171 NGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAY-AEIH 229

Query: 141 GTLP---------IVRAAALEQGQMVLLL-----HKQTKNSLTDDDCIELLVQLI---ET 183
                              L++      L                    +L  LI   + 
Sbjct: 230 EFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDE 289

Query: 184 GFYVVALQLLRDRPRLATKRAE----NEETALHVLARK 217
                   LL      A         +    L +  R 
Sbjct: 290 VLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRL 327

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (131), Expect = 6e-09
 Identities = 24/129 (18%), Positives = 45/129 (34%), Gaps = 4/129 (3%)

Query: 8   LGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQE 67
           L      G  E  ++LL   GA+++            AL        +      ++ G +
Sbjct: 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD 211

Query: 68  I---TNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
           +      G T L +A +   +  V+ LL+     ++   +  G TA   A    + +I E
Sbjct: 212 VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI-EINDTDSDGKTALLLAVELKLKKIAE 270

Query: 125 EMMKGNKDI 133
            + K     
Sbjct: 271 LLCKRGAST 279

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (124), Expect = 5e-08
 Identities = 42/275 (15%), Positives = 91/275 (33%), Gaps = 27/275 (9%)

Query: 72  GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNK 131
            N  L  A Q   +D V++LL+  +  +  ++ + G T    A      +IVE +++   
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEGGANVN-FQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63

Query: 132 DIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTKNSLTDDDCIELLVQLIETGFYVVALQ 191
           D  +      T  ++ A A     + L L K    +  D       ++    G       
Sbjct: 64  DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKF 123

Query: 192 LLRDRPRLATKRAENE---------ETALHVLARKDLTST----------NQNRRGTFFQ 232
           L +    +  +R   E          TAL   A K               + N      +
Sbjct: 124 LYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGR 183

Query: 233 RCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLL 292
                     ++     +   L        +  ++++    R    +  A ++ ++  + 
Sbjct: 184 NALIHALLSSDDSDVEAITHLL-------LDHGADVNVRGERGKTPLILAVEKKHLGLVQ 236

Query: 293 ILIREYADLMRKCDENGYTIFHVAVLNRLEELFKF 327
            L+ +    +   D +G T   +AV  +L+++ + 
Sbjct: 237 RLLEQEHIEINDTDSDGKTALLLAVELKLKKIAEL 271

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 4e-05
 Identities = 25/122 (20%), Positives = 50/122 (40%), Gaps = 3/122 (2%)

Query: 41  LYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTE-- 98
           L  AA  G   V K + D+   ++     N+G  AL  A  ++    V+ +  ++     
Sbjct: 152 LMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA 210

Query: 99  DLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVL 158
           D+  + + G T    A     + +V+ +++         D DG   ++ A  L+  ++  
Sbjct: 211 DVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAE 270

Query: 159 LL 160
           LL
Sbjct: 271 LL 272

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 2e-04
 Identities = 41/249 (16%), Positives = 69/249 (27%), Gaps = 45/249 (18%)

Query: 14  NGIKEAPRVLLSNGG-ANLSEDSLRRLKLYRAALNGDWAVAK------------------ 54
           N   +  + LL  G   N  E+      L+ A       + +                  
Sbjct: 15  NEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGAT 74

Query: 55  -------------DIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELL--------K 93
                              K     E    G TA   AA    +  +K L         +
Sbjct: 75  PFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLR 134

Query: 94  MMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQ 153
             + ED  +  K G TA   AA  G VE+++ ++          D  G   ++ A     
Sbjct: 135 RKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSD 194

Query: 154 GQMVL-----LLHKQTKNSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEE 208
              V      LL      ++  +     L+  +E     +  +LL            + +
Sbjct: 195 DSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGK 254

Query: 209 TALHVLARK 217
           TAL +    
Sbjct: 255 TALLLAVEL 263

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 0.001
 Identities = 12/51 (23%), Positives = 26/51 (50%)

Query: 278 LIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIFHVAVLNRLEELFKFI 328
           L+  A +  +V  +  L+   A++  + +E G+T  H AV    E++ + +
Sbjct: 8   LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELL 58

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 51.6 bits (122), Expect = 7e-08
 Identities = 44/262 (16%), Positives = 83/262 (31%), Gaps = 15/262 (5%)

Query: 68  ITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMM 127
           +          A  +   + V  LL+  +  D+   N  G TA   A     V++V+ ++
Sbjct: 36  VKFDDGAVFLAACSSGDTEEVLRLLERGA--DINYANVDGLTALHQACIDDNVDMVKFLV 93

Query: 128 KGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTKNSLTDDDCIELLVQLIETGFYV 187
           +   +I    +         A+         L+ +       + +    L    E     
Sbjct: 94  ENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEE 153

Query: 188 VALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKEENKQA 247
           +    +  +        + EE  +   AR+ L S + N           L     +    
Sbjct: 154 LLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGY-- 211

Query: 248 LELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDE 307
            E+++ L            +++         +  AA  G      IL+    D+    ++
Sbjct: 212 TEVLKLLIQARY-------DVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAV-NK 263

Query: 308 NGYTIFHVA---VLNRLEELFK 326
            G T F VA   +L  LEEL K
Sbjct: 264 VGQTAFDVADEDILGYLEELQK 285

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 43.2 bits (100), Expect = 4e-05
 Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 3/95 (3%)

Query: 69  TNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMK 128
              G TALHVAA     + +K L++     D+  K+  G T    AA  G  E    +++
Sbjct: 196 AKSGGTALHVAAAKGYTEVLKLLIQARY--DVNIKDYDGWTPLHAAAHWGKEEACRILVE 253

Query: 129 GNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQ 163
              D+  V +  G      A     G +  L  KQ
Sbjct: 254 NLCDMEAV-NKVGQTAFDVADEDILGYLEELQKKQ 287

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 42.4 bits (98), Expect = 6e-05
 Identities = 45/237 (18%), Positives = 87/237 (36%), Gaps = 12/237 (5%)

Query: 109 TAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTKNSL 168
             F  A +SG  E V  +++   DI    ++DG   + +A   +   MV  L +   N  
Sbjct: 42  AVFLAACSSGDTEEVLRLLERGADI-NYANVDGLTALHQACIDDNVDMVKFLVENGANIN 100

Query: 169 TDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRG 228
             D+   + +    +  Y+   + L  +           +T L +   + +    Q    
Sbjct: 101 QPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQ---- 156

Query: 229 TFFQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNV 288
                    G + E  ++  E +        L+S  ++++    +  T L   AAK G  
Sbjct: 157 ---NEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAK-GYT 212

Query: 289 LFLLILIREYADLMRKCDENGYTIFHVAVLNRLEELFKFIYDAKSIADLMVDSNDGE 345
             L +LI+   D+    D +G+T  H A     EE  + + +     D+   +  G+
Sbjct: 213 EVLKLLIQARYDVN-IKDYDGWTPLHAAAHWGKEEACRILVENL--CDMEAVNKVGQ 266

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 51.3 bits (121), Expect = 8e-08
 Identities = 40/300 (13%), Positives = 93/300 (31%), Gaps = 40/300 (13%)

Query: 39  LKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTE 98
           +KL+  A  G +A+ + I  +  V I         T LH  A  +  +  ++L+   + E
Sbjct: 4   IKLHTEA-AGSYAITEPI-TRESVNIID--PRHNRTVLHWIASNSSAEKSEDLIVHEAKE 59

Query: 99  DLAK------KNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALE 152
            +A        +    T    A  +    +V  +MK   D  +                 
Sbjct: 60  CIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKS------------- 106

Query: 153 QGQMVLLLHKQTKNSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALH 212
                    +   +    +    ++V ++ +      ++ L      A     + E    
Sbjct: 107 --------ERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNE---G 155

Query: 213 VLARKDLTSTNQNRRGTFFQRCFNLGAEKEENKQALELVE----SLWTEVVLSSESVSEI 268
                      +      +       +EK + + AL            + ++  +  ++ 
Sbjct: 156 RDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKD 215

Query: 269 SKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIFHVAVLNRLEELFKFI 328
            +     T ++  AA+ G +  ++ LI++ A +    D   +T   +A  N    +    
Sbjct: 216 KQDEDGKTPIML-AAQEGRIEVVMYLIQQGASVEAV-DATDHTARQLAQANNHHNIVDIF 273

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 42.4 bits (98), Expect = 6e-05
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 2/91 (2%)

Query: 72  GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNK 131
           G TALH AAQ + +  VK L+    +    K+++ G T    AA  G +E+V  +++   
Sbjct: 187 GRTALHYAAQVSNMPIVKYLVGEKGSNK-DKQDEDGKTPIMLAAQEGRIEVVMYLIQQGA 245

Query: 132 DIAMVPDMDGTLPIVRAAALEQGQMVLLLHK 162
            +  V D         A A     +V +  +
Sbjct: 246 SVEAV-DATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 37.8 bits (86), Expect = 0.002
 Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 8/71 (11%)

Query: 26  NGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEI---TNLGNTALHVAAQA 82
            G     +D   +  +  AA  G   V       Y ++ G  +       +TA  +A   
Sbjct: 210 KGSNKDKQDEDGKTPIMLAAQEGRIEVVM-----YLIQQGASVEAVDATDHTARQLAQAN 264

Query: 83  NCIDFVKELLK 93
           N  + V    +
Sbjct: 265 NHHNIVDIFDR 275

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (116), Expect = 3e-07
 Identities = 35/263 (13%), Positives = 69/263 (26%), Gaps = 46/263 (17%)

Query: 72  GNTALHVAAQANCIDFVKELLKMMSTE--DLAKKNKIGCTAFFYAAAS----GMVEIVEE 125
           G+T LH+A     +  V  L+ +      +L   N +  T    A  +     +  +V  
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 62

Query: 126 MMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTKNSLTDDDCIELLVQLIETGF 185
                                R+    +  +             + D +  L   + T  
Sbjct: 63  GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC 122

Query: 186 YVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQ--NRRGTFFQRCFNLGAEKEE 243
                 LL     +     ++  + L      +  S  Q   + G         G     
Sbjct: 123 QETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSG----- 177

Query: 244 NKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMR 303
                                           +  +  A+ RG +  +  L+R  AD   
Sbjct: 178 --------------------------------SSALHSASGRGLLPLVRTLVRSGADSSL 205

Query: 304 KCDENGYTIFHVAVLNRLEELFK 326
           K + +  T   VA   R+ ++ +
Sbjct: 206 K-NCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 9e-06
 Identities = 17/83 (20%), Positives = 36/83 (43%), Gaps = 4/83 (4%)

Query: 41  LYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDL 100
           L  A  N   ++ + +         Q  +  G++ALH A+    +  V+ L++  +  D 
Sbjct: 148 LIHAVENNSLSMVQLLLQHGANVNAQMYS--GSSALHSASGRGLLPLVRTLVRSGA--DS 203

Query: 101 AKKNKIGCTAFFYAAASGMVEIV 123
           + KN    T    A +  +++I+
Sbjct: 204 SLKNCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.003
 Identities = 16/85 (18%), Positives = 30/85 (35%), Gaps = 8/85 (9%)

Query: 8   LGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQE 67
           L   + N      ++LL +G    ++       L+ A+  G   + +       V  G +
Sbjct: 148 LIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVR-----TLVRSGAD 202

Query: 68  I---TNLGNTALHVAAQANCIDFVK 89
                   +T L VA     ID ++
Sbjct: 203 SSLKNCHNDTPLMVARSRRVIDILR 227

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.3 bits (113), Expect = 7e-07
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 73  NTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMK 128
           N  LH A   N    V+ELL       L +K++ G     ++ +    EI   ++ 
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKP-SLLLQKDQDGRIPLHWSVSFQAHEITSFLLS 55

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (109), Expect = 2e-06
 Identities = 38/206 (18%), Positives = 66/206 (32%), Gaps = 33/206 (16%)

Query: 39  LKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTE 98
           L +   A +G     K+     K            TALH A  A   + V+ LL++    
Sbjct: 5   LMVCNLAYSGKLEELKESILADKSLA-TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 63

Query: 99  D-------------------------------LAKKNKIGCTAFFYAAASGMVEIVEEMM 127
           +                               +   N+ GCT   YAA+    EI   ++
Sbjct: 64  NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLL 123

Query: 128 KGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTKNSLTDDDCIELLVQLIETGFYV 187
           +G  +       + T     AA      + +LL+ +   ++ D +    L    +     
Sbjct: 124 EGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVE 183

Query: 188 VALQLLRDRPRLATKRAENEETALHV 213
            A +LL  +        + E+T L V
Sbjct: 184 EA-KLLVSQGASIYIENKEEKTPLQV 208

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 1e-05
 Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 5/122 (4%)

Query: 8   LGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQE 67
           L +  +    E   +LL  G    ++D      ++RAA  G+  +   +         Q 
Sbjct: 107 LHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQ- 165

Query: 68  ITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMM 127
               GNT LH+A     ++  K L+   +   +  +NK   T     A  G+  I++ M+
Sbjct: 166 -DTEGNTPLHLACDEERVEEAKLLVSQGA--SIYIENKEEKTPLQV-AKGGLGLILKRMV 221

Query: 128 KG 129
           +G
Sbjct: 222 EG 223

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (103), Expect = 1e-05
 Identities = 26/140 (18%), Positives = 55/140 (39%), Gaps = 2/140 (1%)

Query: 73  NTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKD 132
           N  +   A +  ++ +KE +         + ++   TA  +A ++G  EIVE +++    
Sbjct: 4   NLMVCNLAYSGKLEELKESILADK-SLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP 62

Query: 133 IAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTKNSLTDDDCIELLVQLIETGFYVVALQL 192
           +    D   +   + A+A     +  LL K  + +  + +    L        + +A+ L
Sbjct: 63  VNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVML 122

Query: 193 LRDRPRLATKRAENEETALH 212
           L         +   E TA+H
Sbjct: 123 LEGGANP-DAKDHYEATAMH 141

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (105), Expect = 5e-06
 Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 72  GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMK-GN 130
           G TALH+A      D V  LLK  +  D+ +    G + +          I +++ +   
Sbjct: 145 GRTALHLAVDLQNPDLVSLLLKCGA--DVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTL 202

Query: 131 KDIAMVPDMD 140
           +++ M+P+ +
Sbjct: 203 ENLQMLPESE 212

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (103), Expect = 9e-06
 Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 2/45 (4%)

Query: 72  GNTALHVAAQANCIDFVKELLKMMSTE--DLAKKNKIGCTAFFYA 114
           G++ LH+A          E+++ +  +   L  +N +  T    A
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLA 46

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.4 bits (82), Expect = 0.003
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 72  GNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
             TALH A + N  + V+  L +    D+  ++K   TAF  +  +G  ++ E
Sbjct: 100 KMTALHWATEHNHQEVVE--LLIKYGADVHTQSKFCKTAFDISIDNGNEDLAE 150

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.1 bits (82), Expect = 0.003
 Identities = 19/148 (12%), Positives = 42/148 (28%), Gaps = 4/148 (2%)

Query: 32  SEDSLRRLKLYRAALNGDWAVAKDIY----DKYKVEIGQEITNLGNTALHVAAQANCIDF 87
           ++ + +   L  A    D       Y    D  +            TALH+A ++     
Sbjct: 1   ADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTS 60

Query: 88  VKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVR 147
           +  +  ++       K     +   +           +++   K    + +  G  P+  
Sbjct: 61  LHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDI 120

Query: 148 AAALEQGQMVLLLHKQTKNSLTDDDCIE 175
           A  L+      LL +           +E
Sbjct: 121 AKRLKHEHCEELLTQALSGRFNSHVHVE 148

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 36.7 bits (83), Expect = 0.004
 Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 2/52 (3%)

Query: 73  NTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVE 124
            T L +AA+    +  K LL   +  +    + +       A+     +IV 
Sbjct: 157 ETPLFLAAREGSYEASKALLDNFA--NREITDHMDRLPRDVASERLHHDIVR 206

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	507
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.97
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.97
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.96
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.96
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.95
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.95
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.95
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.94
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.94
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.94
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.93
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.92
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.91
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.9
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.89
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.89
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.88
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.88
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.85
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.84

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.4e-44  Score=356.13  Aligned_cols=342  Identities=19%  Similarity=0.171  Sum_probs=286.5

Q ss_pred             ccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCC
Q 041247            5 LSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANC   84 (507)
Q Consensus         5 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~   84 (507)
                      .||||+||..|+.++|++|+++|++++..|..|+||||+|+..|+.+++++|+++ +++++.+ |.+|+||||+|+..|+
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~-gadi~~~-~~~g~t~L~~A~~~g~   78 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQN-KAKVNAK-AKDDQTPLHCAARIGH   78 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHH-TCCSSCC-CTTSCCHHHHHHHHTC
T ss_pred             CChHHHHHHCcCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC-cCCCCCC-CCCCCCHHHHHHHcCC
Confidence            4999999999999999999999999999999999999999999999999998875 7899998 9999999999999999


Q ss_pred             HHHHHHHHHcCC-------------------------------chhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCC
Q 041247           85 IDFVKELLKMMS-------------------------------TEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDI  133 (507)
Q Consensus        85 ~e~v~~Ll~~~~-------------------------------~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~  133 (507)
                      .+++++|++...                               +...+..|..+.++++.|+..++.++++.|+++++++
T Consensus        79 ~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~  158 (408)
T d1n11a_          79 TNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP  158 (408)
T ss_dssp             HHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            999999997641                               1223456788999999999999999999999999996


Q ss_pred             CccCCCCCChHHHHHHHcCcHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHH
Q 041247          134 AMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALH  212 (507)
Q Consensus       134 ~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh  212 (507)
                       +..+.+|.+|||+|+..|+.+++++|+++++ .+..+..|.||+|.+....+.+....++.. .......+..|.||||
T Consensus       159 -~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~t~l~  236 (408)
T d1n11a_         159 -NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQY-GGSANAESVQGVTPLH  236 (408)
T ss_dssp             -TCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHH
T ss_pred             -CcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhc-cccccccCCCCCCHHH
Confidence             8889999999999999999999999999998 888889999999999999999999888877 4444567888899999


Q ss_pred             HHHhcCCccccc-cccccc------cccccchhhh-hhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHH
Q 041247          213 VLARKDLTSTNQ-NRRGTF------FQRCFNLGAE-KEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAK  284 (507)
Q Consensus       213 ~A~~~~~~~~~~-~~~~~~------~~~~~~~~~~-~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~  284 (507)
                      +|+..++.+... ....+.      ..+.++.... ...+   .+++++|++++. +++.    .  +..+.||||.|+.
T Consensus       237 ~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~---~~i~~~Ll~~g~-~~~~----~--~~~~~t~L~~~~~  306 (408)
T d1n11a_         237 LAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGH---VPVADVLIKHGV-MVDA----T--TRMGYTPLHVASH  306 (408)
T ss_dssp             HHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTC---HHHHHHHHHHTC-CTTC----C--CSSCCCHHHHHHH
T ss_pred             HHHHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCc---HHHHHHHHHCCC-cccc----c--cccccccchhhcc
Confidence            999988876621 111111      1223344444 3333   789999999988 6664    2  2233899999999


Q ss_pred             cCcHHHHHHHHHHCcccccccccCCCchHHHHHHhCchHHHHHHHhchhhhhhhhccccCCCCCcCCCCCccccccchhH
Q 041247          285 RGNVLFLLILIREYADLMRKCDENGYTIFHVAVLNRLEELFKFIYDAKSIADLMVDSNDGEGEMFDPPLYMDIDNASSYM  364 (507)
Q Consensus       285 ~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~d~~g~t~~~~~~~~~k~~~s~~  364 (507)
                      .++.++++++++.|+++ +.+|.+|+||||+|+++|+.++|++|+++|+++    +.+|.+|+|   |.+... ..+...
T Consensus       307 ~~~~~~~~~ll~~g~~i-n~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~----n~~d~~G~t---~L~~A~-~~~~~~  377 (408)
T d1n11a_         307 YGNIKLVKFLLQHQADV-NAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASP----NEVSSDGTT---PLAIAK-RLGYIS  377 (408)
T ss_dssp             SSCSHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS----CCCCSSSCC---HHHHHH-HTTCHH
T ss_pred             cCcceeeeeeccccccc-cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC----CCCCCCCCC---HHHHHH-HcCCHH
Confidence            99999999999999998 999999999999999999999999999999998    889999999   444333 234455


Q ss_pred             HHHHH
Q 041247          365 IVATL  369 (507)
Q Consensus       365 vva~L  369 (507)
                      +|..|
T Consensus       378 iv~~L  382 (408)
T d1n11a_         378 VTDVL  382 (408)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55544

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-41  Score=337.30  Aligned_cols=312  Identities=18%  Similarity=0.148  Sum_probs=257.3

Q ss_pred             CCcccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhch--------------------
Q 041247            2 DNILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYK--------------------   61 (507)
Q Consensus         2 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~--------------------   61 (507)
                      .+|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+....                    
T Consensus        31 ~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~  110 (408)
T d1n11a_          31 VKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREG  110 (408)
T ss_dssp             SCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhhhccccccccccchhhhhhhhc
Confidence            358899999999999999999999999999999999999999999999999998886421                    


Q ss_pred             ------------hccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhc
Q 041247           62 ------------VEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKG  129 (507)
Q Consensus        62 ------------~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~  129 (507)
                                  ...... +..+.++++.|+..++.+++++|+++  +.+++..+.+|.+|||+|+..|+.+++++|+++
T Consensus       111 ~~~~~~~~~~~~~~~~~~-~~~~~~~l~~a~~~~~~~~v~~ll~~--~~~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~  187 (408)
T d1n11a_         111 HVETVLALLEKEASQACM-TKKGFTPLHVAAKYGKVRVAELLLER--DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPR  187 (408)
T ss_dssp             CHHHHHHHHHTTCCSCCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGG
T ss_pred             cccccccccccccccccc-ccccchHHHHHHHcCCHHHHHHHHHc--CCCCCcCCCcCchHHHHHHHcCCHHHHHHHHhc
Confidence                        112222 67789999999999999999999999  899999999999999999999999999999999


Q ss_pred             CCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCc
Q 041247          130 NKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEE  208 (507)
Q Consensus       130 ~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~  208 (507)
                      |+++ +..+..|.||+|.++...+.++...++.... ....+.++.||++.|+..++.++++.+++. ....+..|..|.
T Consensus       188 g~~~-~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~-~~~~~~~~~~g~  265 (408)
T d1n11a_         188 GGSP-HSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSK-QANGNLGNKSGL  265 (408)
T ss_dssp             TCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCTTCC
T ss_pred             CCcc-cccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhHhhhhhcc-ccccccccCCCC
Confidence            9986 7788888888888888888888888877776 566677777888888888888888877776 445556777788


Q ss_pred             hHHHHHHhcCCccc-ccccccccccc------ccchhhh-hhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHH
Q 041247          209 TALHVLARKDLTST-NQNRRGTFFQR------CFNLGAE-KEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIF  280 (507)
Q Consensus       209 t~Lh~A~~~~~~~~-~~~~~~~~~~~------~~~~~~~-~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh  280 (507)
                      |||+.|+..++.++ .+++..|.+.+      .+++... ...+   .++++++++.+. +++.    .+.+  |+||||
T Consensus       266 ~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~---~~~~~~ll~~g~-~in~----~d~~--G~T~Lh  335 (408)
T d1n11a_         266 TPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGN---IKLVKFLLQHQA-DVNA----KTKL--GYSPLH  335 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSC---SHHHHHHHHTTC-CTTC----CCTT--SCCHHH
T ss_pred             ChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCc---ceeeeeeccccc-cccc----cCCC--CCCHHH
Confidence            88888888877766 33333343332      2222222 2222   788999999888 7765    3444  499999


Q ss_pred             HHHHcCcHHHHHHHHHHCcccccccccCCCchHHHHHHhCchHHHHHHH
Q 041247          281 DAAKRGNVLFLLILIREYADLMRKCDENGYTIFHVAVLNRLEELFKFIY  329 (507)
Q Consensus       281 ~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll  329 (507)
                      .|+++|+.++|++|+++|+++ +.+|.+|+||||+|+++|+.++|++|.
T Consensus       336 ~A~~~g~~~iv~~Ll~~GAd~-n~~d~~G~t~L~~A~~~~~~~iv~~L~  383 (408)
T d1n11a_         336 QAAQQGHTDIVTLLLKNGASP-NEVSSDGTTPLAIAKRLGYISVTDVLK  383 (408)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCS-CCCCSSSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            999999999999999999998 999999999999999999999998764

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9.8e-38  Score=290.63  Aligned_cols=228  Identities=19%  Similarity=0.108  Sum_probs=152.9

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCchh---hcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHH
Q 041247           69 TNLGNTALHVAAQANCIDFVKELLKMMSTED---LAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPI  145 (507)
Q Consensus        69 ~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~---~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL  145 (507)
                      +++|+||||+||++|+.+++++|+++  +++   ++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|.+|.|||
T Consensus         6 ~~~G~t~Lh~A~~~~~~~~v~~Ll~~--~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i-~~~d~~g~tpL   82 (255)
T d1oy3d_           6 TEDGDTALHLAVIHQHEPFLDFLLGF--SAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTAL   82 (255)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHH--HTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCHH
T ss_pred             CcCCCCHHHHHHHcCCHHHHHHHHHc--CCCcccccCcCCCCCCccchHHhhcccccccccccccccc-cccccccchhh
Confidence            55666666666666666666666665  333   5555566666666666666666666666666664 55666666666


Q ss_pred             HHHHHcCcHHHHHHHHhccccccCC-----------CChh---hHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHH
Q 041247          146 VRAAALEQGQMVLLLHKQTKNSLTD-----------DDCI---ELLVQLIETGFYVVALQLLRDRPRLATKRAENEETAL  211 (507)
Q Consensus       146 ~~A~~~g~~~~v~~Ll~~~~~~~~~-----------~~g~---t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~L  211 (507)
                      |+|+..|+.++++.|++.......+           ....   .++..............+........+.+|.+|+|||
T Consensus        83 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpL  162 (255)
T d1oy3d_          83 HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPL  162 (255)
T ss_dssp             HHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHH
T ss_pred             hhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccc
Confidence            6666666666666666554310000           0000   1111111111112222223334556678899999999


Q ss_pred             HHHHhcCCccccccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHH
Q 041247          212 HVLARKDLTSTNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFL  291 (507)
Q Consensus       212 h~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv  291 (507)
                      |+|+..++                            .+++++|++.+. +.+.     ..+..|.||||+|++.|+.+++
T Consensus       163 h~A~~~~~----------------------------~~~v~~Ll~~~~-~~~~-----~~~~~g~TpL~~A~~~~~~~~v  208 (255)
T d1oy3d_         163 HVAVIHKD----------------------------AEMVRLLRDAGA-DLNK-----PEPTCGRTPLHLAVEAQAASVL  208 (255)
T ss_dssp             HHHHHTTC----------------------------HHHHHHHHHHTC-CTTC-----CCTTTCCCHHHHHHHTTCHHHH
T ss_pred             cccccccc----------------------------cccccchhcccc-cccc-----cccccccccccccccccHHHHH
Confidence            99999999                            999999999887 5543     1233459999999999999999


Q ss_pred             HHHHHHCcccccccccCCCchHHHHHHhCchHHHHHHHhchhh
Q 041247          292 LILIREYADLMRKCDENGYTIFHVAVLNRLEELFKFIYDAKSI  334 (507)
Q Consensus       292 ~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~ga~  334 (507)
                      ++|+++|+++ +.+|..|+||||+|+.+++.+++++|+++||+
T Consensus       209 ~~Ll~~gadi-n~~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         209 ELLLKAGADP-TARMYGGRTPLGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             HHHHHTTCCT-TCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             HHHHHCCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            9999999998 99999999999999999999999999999996

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-35  Score=279.69  Aligned_cols=277  Identities=16%  Similarity=0.103  Sum_probs=179.1

Q ss_pred             cccHHHHHHHcCCChhhHHHHhCCCCCCCc-cccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHc
Q 041247            4 ILSGLGWVMTNGIKEAPRVLLSNGGANLSE-DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQA   82 (507)
Q Consensus         4 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~   82 (507)
                      +.|+||.|+++|+.++|++|+++|++++.+ +..|+||||+|+..|+.++++.|++. +...... +..+.+|.+.|+..
T Consensus         5 ~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~-~~~~~~~-~~~~~~~~~~~~~~   82 (285)
T d1wdya_           5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH-GADPVLR-KKNGATPFLLAAIA   82 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTCCCHHHHHHHH
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccc-ccccccc-ccccchhhHHHhhc
Confidence            345555555555555555555555554433 23455555555555555555544332 3333333 44445555555555


Q ss_pred             CCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHh
Q 041247           83 NCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHK  162 (507)
Q Consensus        83 g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  162 (507)
                      +..+.....++.  ..+....+..+.|+++.|+..|+...++.++....+. .........                   
T Consensus        83 ~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-------------------  140 (285)
T d1wdya_          83 GSVKLLKLFLSK--GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANV-NLRRKTKED-------------------  140 (285)
T ss_dssp             TCHHHHHHHHHT--TCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCCCHH-------------------
T ss_pred             CCccccchhhhh--cccccccccCCCchhHHHHHhcchhhhhhhhhhcccc-cccccchhh-------------------
Confidence            555555555554  2333334444555555555555555555555444332 111111000                   


Q ss_pred             ccccccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCccccccccccccccccchhhhhh
Q 041247          163 QTKNSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKE  242 (507)
Q Consensus       163 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (507)
                         ....+..|.||||.|+++|+.+++++|+++.+.+++..+..|.++++.+.....                       
T Consensus       141 ---~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~-----------------------  194 (285)
T d1wdya_         141 ---QERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSD-----------------------  194 (285)
T ss_dssp             ---HHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSC-----------------------
T ss_pred             ---hhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCccccccccccc-----------------------
Confidence               112345678888999998889999999888777888889999988877665544                       


Q ss_pred             hhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHH-CcccccccccCCCchHHHHHHhCc
Q 041247          243 ENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIRE-YADLMRKCDENGYTIFHVAVLNRL  321 (507)
Q Consensus       243 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~-~~~~~~~~d~~g~t~L~~A~~~~~  321 (507)
                       .....+++++|+++++ +++.    .+..|  .||||.|++.|+.+++++|++. |.++ +.+|.+|+||||+|+++++
T Consensus       195 -~~~~~~i~~~Li~~ga-~~n~----~~~~g--~t~L~~a~~~~~~~~v~~lL~~~g~di-n~~d~~G~TpL~~A~~~~~  265 (285)
T d1wdya_         195 -DSDVEAITHLLLDHGA-DVNV----RGERG--KTPLILAVEKKHLGLVQRLLEQEHIEI-NDTDSDGKTALLLAVELKL  265 (285)
T ss_dssp             -TTTHHHHHHHHHHTTC-CSSC----CCTTS--CCHHHHHHHTTCHHHHHHHHHSSSCCT-TCCCTTSCCHHHHHHHTTC
T ss_pred             -chHHHHHHHHHHHCCC-CCCc----cCCCC--CCccchhhhcCcHHHHHHHHHcCCCCC-cCCCCCCCCHHHHHHHcCC
Confidence             1112679999999988 7764    34444  9999999999999999999985 7787 9999999999999999999


Q ss_pred             hHHHHHHHhchhhhhhhhcccc
Q 041247          322 EELFKFIYDAKSIADLMVDSND  343 (507)
Q Consensus       322 ~~iv~~Ll~~ga~~~~~~~~~d  343 (507)
                      .+++++|+++||++    +.+|
T Consensus       266 ~eiv~~Ll~~GAd~----n~~d  283 (285)
T d1wdya_         266 KKIAELLCKRGAST----DCGD  283 (285)
T ss_dssp             HHHHHHHHHHSSCS----CCSS
T ss_pred             HHHHHHHHHCCCCC----Cccc
Confidence            99999999999998    6665

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-35  Score=270.56  Aligned_cols=219  Identities=21%  Similarity=0.216  Sum_probs=162.8

Q ss_pred             CCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHH
Q 041247           37 RRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAA  116 (507)
Q Consensus        37 g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~  116 (507)
                      .++.|+.+|..|+.+.++.++.+++..++.+ |..|+||||+|+..|+.|++++|++.  +......+..+.++++.++.
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~-D~~G~TpLh~Aa~~g~~e~~~~l~~~--~~~~~~~~~~~~~~~~~~~~   79 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSLATRT-DQDSRTALHWACSAGHTEIVEFLLQL--GVPVNDKDDAGWSPLHIAAS   79 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGGGGCC-CTTSCCHHHHHHHHTCHHHHHHHHHH--TCCSCCCCTTCCCHHHHHHH
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCcCcCc-CCCCCCHHHHHHHhhhhccccccccc--cccccccccccccccccccc
Confidence            3567777888888888877777777777777 88888888888888888888888877  56666667777788888888


Q ss_pred             cCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHHHhc
Q 041247          117 SGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLLRD  195 (507)
Q Consensus       117 ~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  195 (507)
                      .|+.+++++|+++++++ +.+|.+|.||||+|+..|+.+++++|+++|. ++.                           
T Consensus        80 ~~~~~i~~~Ll~~~~d~-~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~---------------------------  131 (223)
T d1uoha_          80 AGRDEIVKALLGKGAQV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA---------------------------  131 (223)
T ss_dssp             HTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC---------------------------
T ss_pred             ccccchhHHHhccCcee-EeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCC---------------------------
Confidence            88888888888888775 7777778888888887777777777777665 444                           


Q ss_pred             CchhhhhcccCCchHHHHHHhcCCccccccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCC
Q 041247          196 RPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARP  275 (507)
Q Consensus       196 ~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g  275 (507)
                             +|..|.||||+|+..++                            .+++++|.+.+. +++.    .+.+|  
T Consensus       132 -------~~~~~~t~L~~a~~~~~----------------------------~~~~~~L~~~~~-~i~~----~d~~g--  169 (223)
T d1uoha_         132 -------KDHYEATAMHRAAAKGN----------------------------LKMIHILLYYKA-STNI----QDTEG--  169 (223)
T ss_dssp             -------CCTTSCCHHHHHHHTTC----------------------------HHHHHHHHHTTC-CSCC----CCTTC--
T ss_pred             -------cCCCCCccchhhhhcCC----------------------------cchhhhhccccc-eeee----ccCCC--
Confidence                   44555555555555555                            555555555554 4443    23333  


Q ss_pred             ChHHHHHHHcCcHHHHHHHHHHCcccccccccCCCchHHHHHHhCchHHHHHHHh
Q 041247          276 TRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIFHVAVLNRLEELFKFIYD  330 (507)
Q Consensus       276 ~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~  330 (507)
                      +||||.|+++|+.+++++|+++|+++ +.+|.+|+||||+| ..++.+++++|++
T Consensus       170 ~TpL~~Aa~~g~~~~v~~LL~~Gad~-~~~d~~g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         170 NTPLHLACDEERVEEAKLLVSQGASI-YIENKEEKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHC-CTTHHHHHHHHHC
T ss_pred             CceeccccccCcHHHHHHHHHCCCCC-CCCCCCCCCHHHHH-HCCCHHHHhcccC
Confidence            78888888888888888888888887 88899999999988 4688888888875

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-35  Score=269.73  Aligned_cols=209  Identities=21%  Similarity=0.180  Sum_probs=188.5

Q ss_pred             cccHHHHHHHcCCChhhHHHHhC-CCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHc
Q 041247            4 ILSGLGWVMTNGIKEAPRVLLSN-GGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQA   82 (507)
Q Consensus         4 g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~   82 (507)
                      +.+.|+.+|..|+.+.++.+++. +.....+|..|+||||+|+..|+.+++++++.. +...... +..+.++++.|+..
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~-~~~~~~~-~~~~~~~~~~~~~~   80 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDK-DDAGWSPLHIAASA   80 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHH-TCCSCCC-CTTCCCHHHHHHHH
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhccccccccc-ccccccc-cccccccccccccc
Confidence            35789999999999999777654 556667899999999999999999999988765 4555555 77889999999999


Q ss_pred             CCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHh
Q 041247           83 NCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHK  162 (507)
Q Consensus        83 g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  162 (507)
                      |+.+++++|+++  +.+++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+..++.+++++|.+
T Consensus        81 ~~~~i~~~Ll~~--~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~-~~~~~~~~t~L~~a~~~~~~~~~~~L~~  157 (223)
T d1uoha_          81 GRDEIVKALLGK--GAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYEATAMHRAAAKGNLKMIHILLY  157 (223)
T ss_dssp             TCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             cccchhHHHhcc--CceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCccchhhhhcCCcchhhhhcc
Confidence            999999999999  7899999999999999999999999999999999996 8899999999999999999999999999


Q ss_pred             ccc-cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCC
Q 041247          163 QTK-NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDL  219 (507)
Q Consensus       163 ~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~  219 (507)
                      .+. .+..|.+|.||||.|+..|+.+++++|++. +.+++.+|.+|+||||+|. .|+
T Consensus       158 ~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~-Gad~~~~d~~g~tpl~~A~-~~~  213 (223)
T d1uoha_         158 YKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQ-GASIYIENKEEKTPLQVAK-GGL  213 (223)
T ss_dssp             TTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHCC-TTH
T ss_pred             ccceeeeccCCCCceeccccccCcHHHHHHHHHC-CCCCCCCCCCCCCHHHHHH-CCC
Confidence            988 888999999999999999999999999987 6788889999999999874 566

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=1.1e-35  Score=279.96  Aligned_cols=262  Identities=19%  Similarity=0.104  Sum_probs=185.3

Q ss_pred             ccHHHHHHHc-CCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhh-------chhccccccCCCCCcHH
Q 041247            5 LSGLGWVMTN-GIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDK-------YKVEIGQEITNLGNTAL   76 (507)
Q Consensus         5 ~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~-------~~~~i~~~~~~~g~t~L   76 (507)
                      +||||++++. |+.++++.|.+.+.+... +.+|+||||+|+..|+.++++.|+..       .|++++.+ |.+|+|||
T Consensus         1 ~~p~~~~~~~~~~~~~~~~l~~~~~n~~~-~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~-d~~G~TpL   78 (277)
T d2fo1e1           1 ESPIKLHTEAAGSYAITEPITRESVNIID-PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAM-DCDENTPL   78 (277)
T ss_dssp             CCCCHHHHHHHSSSCCCSCCSTTTTTTCC-CSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCC-CTTSCCHH
T ss_pred             CChHHHHHHhCCCHHHHHHHHhcCCCcCC-CCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCcccc-CCCCCeee
Confidence            4788865555 566666666666544333 34588899999888888888877643       34567766 77777777


Q ss_pred             HHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCC--CCccCCCCCChHHHHHHHcCcH
Q 041247           77 HVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKD--IAMVPDMDGTLPIVRAAALEQG  154 (507)
Q Consensus        77 h~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~--~~~~~~~~g~tpL~~A~~~g~~  154 (507)
                      |+|++.|+.++|++|+++  |++++.+|.+|+|||++|+..++.++++.+......  ..+..+..+.++.+.+...+..
T Consensus        79 h~A~~~g~~~iv~~Ll~~--Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (277)
T d2fo1e1          79 MLAVLARRRRLVAYLMKA--GADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGR  156 (277)
T ss_dssp             HHHHHHTCHHHHHHHHHT--TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCST
T ss_pred             cccccccccccccccccc--ccccccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccc
Confidence            777777777777777777  677777777777777777777777777777654321  1244566667777777666543


Q ss_pred             HH---HHHHHhccccccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCcccccccccccc
Q 041247          155 QM---VLLLHKQTKNSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFF  231 (507)
Q Consensus       155 ~~---v~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~  231 (507)
                      +.   ++.+.+......  .                       ......+..+..|+||||.++..++            
T Consensus       157 ~~~~~~~~~~~~~~~~~--~-----------------------~~~~~~~~~~~~g~t~L~~~~~~~~------------  199 (277)
T d2fo1e1         157 DQVASAKLLVEKGAKVD--Y-----------------------DGAARKDSEKYKGRTALHYAAQVSN------------  199 (277)
T ss_dssp             THHHHHHHHHHHTCCSS--C-----------------------CSGGGTSSSSCCCCCTHHHHHSSCC------------
T ss_pred             ccccccccccccccccc--c-----------------------cccccccccccCCCCcccccccccc------------
Confidence            32   222222211000  0                       0122334567889999999999999            


Q ss_pred             ccccchhhhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCcccccccccCCCc
Q 041247          232 QRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYT  311 (507)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t  311 (507)
                                      .++++.++.....+.+    .  .+..|+||||+|++.|+.+++++|+++|+++ +.+|.+|+|
T Consensus       200 ----------------~~~~~~~l~~~~~~~~----~--~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadi-n~~d~~G~T  256 (277)
T d2fo1e1         200 ----------------MPIVKYLVGEKGSNKD----K--QDEDGKTPIMLAAQEGRIEVVMYLIQQGASV-EAVDATDHT  256 (277)
T ss_dssp             ----------------HHHHHHHHHHSCCCTT----C--CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCSSSCC
T ss_pred             ----------------cccccccccccccccc----c--cCCCCCCHHHHHHHcCCHHHHHHHHHCcCCC-CCcCCCCCC
Confidence                            8888877654421222    2  3344599999999999999999999999998 999999999


Q ss_pred             hHHHHHHhCchHHHHHHHh
Q 041247          312 IFHVAVLNRLEELFKFIYD  330 (507)
Q Consensus       312 ~L~~A~~~~~~~iv~~Ll~  330 (507)
                      |||+|+++|+.+++++|.+
T Consensus       257 ~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         257 ARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             HHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999986

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-34  Score=264.78  Aligned_cols=222  Identities=17%  Similarity=0.142  Sum_probs=130.2

Q ss_pred             HHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhc---ccccCCCcHHHHHH
Q 041247           39 LKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLA---KKNKIGCTAFFYAA  115 (507)
Q Consensus        39 t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~---~~d~~g~t~Lh~A~  115 (507)
                      +|||+||..|+.++++.|++..+.+++.+ |.+|+||||+|+..|+.+++++|+++  +++++   ..|..|.+|+|+++
T Consensus         2 ~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~-d~~G~TpL~~A~~~g~~~iv~~Ll~~--ga~~~~~~~~~~~~~~~~~~~~   78 (229)
T d1ixva_           2 YPLHQACMENEFFKVQELLHSKPSLLLQK-DQDGRIPLHWSVSFQAHEITSFLLSK--MENVNLDDYPDDSGWTPFHIAC   78 (229)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHCGGGTTCC-CTTSCCHHHHHHHTTCHHHHHHHHTT--CTTCCGGGCCCTTSCCHHHHHH
T ss_pred             HhHHHHHHcCCHHHHHHHHHcCCCccccc-CCCCCCHHHHHHHcCCccccchhhhh--hccccccccccccccccccccc
Confidence            46666666666666666665555555555 56666666666666666666666655  44433   33445556666666


Q ss_pred             HcCcHHHHHHHHhcCCCC-CccCCCCCChHHHHHHHcCcHHHHHHHHhccccccCCCChhhHHHHHHHcCChHHHHHHHh
Q 041247          116 ASGMVEIVEEMMKGNKDI-AMVPDMDGTLPIVRAAALEQGQMVLLLHKQTKNSLTDDDCIELLVQLIETGFYVVALQLLR  194 (507)
Q Consensus       116 ~~g~~~iv~~Ll~~~~~~-~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  194 (507)
                      ..+..++++.++..+... ....+..+.||++.++..++.++++.|++.+.                             
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~-----------------------------  129 (229)
T d1ixva_          79 SVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGA-----------------------------  129 (229)
T ss_dssp             HHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-----------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcc-----------------------------
Confidence            666666665555554432 12344455555555555555555555555554                             


Q ss_pred             cCchhhhhcccCCchHHHHHHhcCCccccccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcC
Q 041247          195 DRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIAR  274 (507)
Q Consensus       195 ~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~  274 (507)
                          ..+.+|..|+||||+|+..|+                            .+++++|++.+..+++.    .+.+  
T Consensus       130 ----~~~~~~~~g~t~l~~a~~~~~----------------------------~~~~~~Ll~~~~~~in~----~d~~--  171 (229)
T d1ixva_         130 ----SVRIKDKFNQIPLHRAASVGS----------------------------LKLIELLCGLGKSAVNW----QDKQ--  171 (229)
T ss_dssp             ----CSCCCCTTSCCHHHHHHHHTC----------------------------HHHHHHHHTTTCCCSCC----CCTT--
T ss_pred             ----cccccCCCCCCccchhhhccc----------------------------ccccccccccccccccc----cccc--
Confidence                223344445555555555554                            44555554433212222    2222  


Q ss_pred             CChHHHHHHHcCcHHHHHHHHH-HCcccccccccCCCchHHHHHHhCchHHHHHHHhchhh
Q 041247          275 PTRLIFDAAKRGNVLFLLILIR-EYADLMRKCDENGYTIFHVAVLNRLEELFKFIYDAKSI  334 (507)
Q Consensus       275 g~t~Lh~A~~~g~~~iv~~Ll~-~~~~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~ga~  334 (507)
                      |+||||+|+++|+.+++++|++ .|+++ +.+|.+|+||||+|+.   .+++++|+++|+|
T Consensus       172 g~TpLh~A~~~~~~~~v~~Ll~~~gad~-~~~d~~g~t~l~~A~~---~~~~~~Ll~~g~d  228 (229)
T d1ixva_         172 GWTPLFHALAEGHGDAAVLLVEKYGAEY-DLVDNKGAKAEDVALN---EQVKKFFLNNVVD  228 (229)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHHCCCS-CCCCTTSCCTGGGCSC---HHHHHHHHHHCCC
T ss_pred             cCCchhhhcccccHHHHHHHHHhcCCCC-CCcCCCCCCHHHHHhh---HHHHHHHHHcCCC
Confidence            3677777777777777888775 47787 8888888899988873   5788888888875

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-33  Score=264.91  Aligned_cols=212  Identities=19%  Similarity=0.169  Sum_probs=171.6

Q ss_pred             CcccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHc
Q 041247            3 NILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQA   82 (507)
Q Consensus         3 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~   82 (507)
                      +|.||||+|+..|+.+++++|++.+......+..+.+|.+.|+..+..+.....++.. .+.... +..+.|+++.|+..
T Consensus        38 ~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~l~~a~~~  115 (285)
T d1wdya_          38 GGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKG-ADVNEC-DFYGFTAFMEAAVY  115 (285)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCTTCB-CTTCCBHHHHHHHT
T ss_pred             CCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCCccccchhhhhc-cccccc-ccCCCchhHHHHHh
Confidence            5889999999999999999999999988888999999999999999999999888764 333344 78899999999999


Q ss_pred             CCHHHHHHHHHcCCchhhcc----------cccCCCcHHHHHHHcCcHHHHHHHHhc-CCCCCccCCCCCChHHHHHHHc
Q 041247           83 NCIDFVKELLKMMSTEDLAK----------KNKIGCTAFFYAAASGMVEIVEEMMKG-NKDIAMVPDMDGTLPIVRAAAL  151 (507)
Q Consensus        83 g~~e~v~~Ll~~~~~~~~~~----------~d~~g~t~Lh~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~  151 (507)
                      |+.+.++.+++.  ..+.+.          .+..|.||||+|++.|+.+++++|+++ ++++ +..+..|.+++..+...
T Consensus       116 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i-~~~~~~~~~~~~~~~~~  192 (285)
T d1wdya_         116 GKVKALKFLYKR--GANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNALIHALLS  192 (285)
T ss_dssp             TCHHHHHHHHHT--TCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCT-TCCCTTSCCHHHHHHHC
T ss_pred             cchhhhhhhhhh--cccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCc-ccccCCCCccccccccc
Confidence            999999999988  344432          345688999999999999999999865 6665 78888888887766543


Q ss_pred             ----CcHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCC
Q 041247          152 ----EQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDL  219 (507)
Q Consensus       152 ----g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~  219 (507)
                          +..+++++|++.++ .+.++.+|.||||.|++.|+.+++++|++.++.+++.+|.+|+||||+|++.++
T Consensus       193 ~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~  265 (285)
T d1wdya_         193 SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKL  265 (285)
T ss_dssp             SCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             ccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCC
Confidence                34567888888877 667777778888888888888888888776666777777777777777777776

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.1e-34  Score=266.74  Aligned_cols=230  Identities=14%  Similarity=0.005  Sum_probs=164.3

Q ss_pred             ccccCCHHhHHHHHcCCHHHHHHHHhhc--hhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcH
Q 041247           33 EDSLRRLKLYRAALNGDWAVAKDIYDKY--KVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTA  110 (507)
Q Consensus        33 ~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~--~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~  110 (507)
                      -+.+|+||||+|++.|+.+++++|++..  +..++.+ |..|+||||+|+..|+.+++++|+++  |++++.+|..|+||
T Consensus         5 i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~-~~~g~TpL~~A~~~g~~~iv~~Ll~~--ga~i~~~d~~g~tp   81 (255)
T d1oy3d_           5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQ-NDLGQTALHLAAILGEASTVEKLYAA--GAGVLVAERGGHTA   81 (255)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCC-CTTSCCHHHHHHHHTCHHHHHHHHHT--TCCSSCCCTTSCCH
T ss_pred             CCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCc-CCCCCCccchHHhhcccccccccccc--cccccccccccchh
Confidence            3567888888888888888888777642  2235566 78888888888888888888888888  78888888888888


Q ss_pred             HHHHHHcCcHHHHHHHHhcCCCCCccCC---------CCCChHHHHHH---HcCcHHHHHHHH-hccc-cccCCCChhhH
Q 041247          111 FFYAAASGMVEIVEEMMKGNKDIAMVPD---------MDGTLPIVRAA---ALEQGQMVLLLH-KQTK-NSLTDDDCIEL  176 (507)
Q Consensus       111 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~---------~~g~tpL~~A~---~~g~~~~v~~Ll-~~~~-~~~~~~~g~t~  176 (507)
                      ||+|+..|+.+++++|++..........         ....+....+.   ..........+. ..+. .+.++.+|.||
T Consensus        82 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~Tp  161 (255)
T d1oy3d_          82 LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP  161 (255)
T ss_dssp             HHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCH
T ss_pred             hhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccc
Confidence            8888888888888888876654211100         01111111111   111111111111 1122 45678889999


Q ss_pred             HHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCccccccccccccccccchhhhhhhhHHHHHHHHHHHH
Q 041247          177 LVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKEENKQALELVESLWT  256 (507)
Q Consensus       177 L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~  256 (507)
                      ||.|++.++.+++++|++........++..|.||||+|++.++                            .+++++|++
T Consensus       162 Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~----------------------------~~~v~~Ll~  213 (255)
T d1oy3d_         162 LHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQA----------------------------ASVLELLLK  213 (255)
T ss_dssp             HHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTC----------------------------HHHHHHHHH
T ss_pred             ccccccccccccccchhcccccccccccccccccccccccccH----------------------------HHHHHHHHH
Confidence            9999999999999999988655555667889999999999999                            999999999


Q ss_pred             HHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCcc
Q 041247          257 EVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYAD  300 (507)
Q Consensus       257 ~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~  300 (507)
                      +++ +++.    .+.+|  +||||+|+++|+.+++++|+++|++
T Consensus       214 ~ga-din~----~d~~g--~t~L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         214 AGA-DPTA----RMYGG--RTPLGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             TTC-CTTC----CCTTS--CCHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             CCC-CCCC----CCCCC--CCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            887 7765    34444  8999999999999999999999987

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.1e-34  Score=259.43  Aligned_cols=209  Identities=18%  Similarity=0.141  Sum_probs=184.9

Q ss_pred             ccHHHHHHHcCCChhhHHHHhCC-CCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhcccc--ccCCCCCcHHHHHHH
Q 041247            5 LSGLGWVMTNGIKEAPRVLLSNG-GANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQ--EITNLGNTALHVAAQ   81 (507)
Q Consensus         5 ~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~--~~~~~g~t~Lh~Aa~   81 (507)
                      .||||+||..|+.++++.|++.+ ...+.+|.+|+||||+|+..|+.+++++|++. +++++.  ..+..|.+|+|+|+.
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~~   79 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSK-MENVNLDDYPDDSGWTPFHIACS   79 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTT-CTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhh-hcccccccccccccccccccccc
Confidence            48999999999999999998854 56667899999999999999999999988875 555542  237789999999999


Q ss_pred             cCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHH
Q 041247           82 ANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLH  161 (507)
Q Consensus        82 ~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll  161 (507)
                      .+..++++.++......+....+..+.||++.++..++.++++.|++.+.+. ..+|.+|+||||+|+..|+.+++++|+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll  158 (229)
T d1ixva_          80 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLC  158 (229)
T ss_dssp             HTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccc-cccCCCCCCccchhhhccccccccccc
Confidence            9999999999988433456677889999999999999999999999999986 888999999999999999999999999


Q ss_pred             hccc--cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHH
Q 041247          162 KQTK--NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLA  215 (507)
Q Consensus       162 ~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~  215 (507)
                      +.+.  .+.+|.+|.||||.|++.|+.+++++|+++.+.+++.+|.+|+||||+|+
T Consensus       159 ~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~  214 (229)
T d1ixva_         159 GLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL  214 (229)
T ss_dssp             TTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCS
T ss_pred             ccccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHh
Confidence            9875  67788999999999999999999999998767788889999999999887

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=1.5e-33  Score=267.45  Aligned_cols=248  Identities=19%  Similarity=0.210  Sum_probs=204.3

Q ss_pred             ccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHH
Q 041247           35 SLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYA  114 (507)
Q Consensus        35 ~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A  114 (507)
                      ..+.|+|+.||..|+.++|++||++ +++++.+ |.+|.||||+|+..|+.++|++|+++  +.+....+..+.+||+.|
T Consensus        38 ~~~~t~l~~A~~~G~~~~v~~Ll~~-Gadvn~~-d~~G~T~L~~A~~~g~~eiv~~Ll~~--~~~~~~~~~~~~~~L~~a  113 (291)
T d1s70b_          38 FDDGAVFLAACSSGDTEEVLRLLER-GADINYA-NVDGLTALHQACIDDNVDMVKFLVEN--GANINQPDNEGWIPLHAA  113 (291)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHH-CCCTTCB-CTTCCBHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHH
T ss_pred             CCCchHHHHHHHcCCHHHHHHHHHC-CCCCCcc-CCCCCcHHHHHHhcCCceeeeeeccc--cccccccccccccccccc
Confidence            4467999999999999999999875 7889988 99999999999999999999999999  788888899999999999


Q ss_pred             HHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc--cccCCCChhhHHHHHHHcCChHHHHHH
Q 041247          115 AASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK--NSLTDDDCIELLVQLIETGFYVVALQL  192 (507)
Q Consensus       115 ~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~L  192 (507)
                      +..++.++++.|++++... ...|..+.+|+++|+..++.+.++.++....  .......+..+.+.        .....
T Consensus       114 ~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~--------~~~~~  184 (291)
T d1s70b_         114 ASCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLR--------DARQW  184 (291)
T ss_dssp             HHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--------HHHHH
T ss_pred             ccccccchhhcccccCccc-ccccccCccccccccccccchhccccccccccccccccccccccccc--------cchhh
Confidence            9999999999999999886 7889999999999999999999999987654  11111111111111        11222


Q ss_pred             HhcCchhhhhcccCCchHHHHHHhcCCccccccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhh
Q 041247          193 LRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLI  272 (507)
Q Consensus       193 l~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~  272 (507)
                      +..........+..|.||||.|+..|+                            .++++.|++.+. +++.    .+.+
T Consensus       185 ~~~~~~~~~~~~~~g~t~L~~a~~~~~----------------------------~~~~~~Ll~~g~-din~----~~~~  231 (291)
T d1s70b_         185 LNSGHINDVRHAKSGGTALHVAAAKGY----------------------------TEVLKLLIQARY-DVNI----KDYD  231 (291)
T ss_dssp             HHHTCCCCCCCTTTCCCHHHHHHHHTC----------------------------HHHHHHHHTTTC-CTTC----CCTT
T ss_pred             hcccccccccccCCCCChhhHHHHcCC----------------------------hhhhccccccee-cccc----cccC
Confidence            222234445678889999999999999                            999999999888 7764    3444


Q ss_pred             cCCChHHHHHHHcCcHHHHHHHHHHCcccccccccCCCchHHHHHHhCchHHHHHHHhchhhh
Q 041247          273 ARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIFHVAVLNRLEELFKFIYDAKSIA  335 (507)
Q Consensus       273 g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~ga~~  335 (507)
                      |  +||||+|++.|+.++|++|+++|+|+ +.+|..|+||||+|++    +++++|.+.+...
T Consensus       232 g--~TpL~~A~~~g~~~iv~lLl~~Gadv-~~~d~~G~TaL~~A~e----~~~~~L~~~~~~~  287 (291)
T d1s70b_         232 G--WTPLHAAAHWGKEEACRILVENLCDM-EAVNKVGQTAFDVADE----DILGYLEELQKKQ  287 (291)
T ss_dssp             C--CCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCTTTSCCS----GGGHHHHHHHHHT
T ss_pred             C--CCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHH----HHHHHHHHHhhhc
Confidence            4  99999999999999999999999998 9999999999999974    6888888776644

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.7e-31  Score=242.07  Aligned_cols=219  Identities=17%  Similarity=0.178  Sum_probs=183.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcC--CchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHH
Q 041247           71 LGNTALHVAAQANCIDFVKELLKMM--STEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRA  148 (507)
Q Consensus        71 ~g~t~Lh~Aa~~g~~e~v~~Ll~~~--~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  148 (507)
                      +|+||||+||+.|+.++++.|++..  .+++++.+|..|+||||+|+..|+.+++++|++++++. +..+..|.++++.|
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~-~~~~~~~~~~~~~a   80 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTAAHLA   80 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhcccccccccccccccccc-cccccccccccccc
Confidence            5889999999999988888887521  16788888889999999999999999999999988886 77888888999999


Q ss_pred             HHcCcHHHHHHHHhccc-----cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCcccc
Q 041247          149 AALEQGQMVLLLHKQTK-----NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTN  223 (507)
Q Consensus       149 ~~~g~~~~v~~Ll~~~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~  223 (507)
                      ...++.++++.+.....     .+.......++++.+.........+.+...........+..|.++|+.|+..+.    
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~----  156 (228)
T d1k1aa_          81 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNS----  156 (228)
T ss_dssp             HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTC----
T ss_pred             cccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhh----
Confidence            98888888887776554     334556677899999988888888888877666666677889999999999998    


Q ss_pred             ccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCccccc
Q 041247          224 QNRRGTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMR  303 (507)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~  303 (507)
                                              .++++.+++++. ..+.    .+.+  |.||||+|+++|+.+++++|+++|+|+ +
T Consensus       157 ------------------------~~~~~~~~~~~~-~~~~----~d~~--g~t~L~~A~~~g~~~~v~~Ll~~Gad~-n  204 (228)
T d1k1aa_         157 ------------------------LSMVQLLLQHGA-NVNA----QMYS--GSSALHSASGRGLLPLVRTLVRSGADS-S  204 (228)
T ss_dssp             ------------------------HHHHHHHHHTTC-CTTC----BCTT--SCBHHHHHHHHTCHHHHHHHHHTTCCT-T
T ss_pred             ------------------------hhhhhhhhhhcc-cccc----cccc--CcchHHHHHHcCCHHHHHHHHHCCCCC-C
Confidence                                    889999988776 5543    3334  499999999999999999999999998 8


Q ss_pred             ccccCCCchHHHHHHhCchHHHH
Q 041247          304 KCDENGYTIFHVAVLNRLEELFK  326 (507)
Q Consensus       304 ~~d~~g~t~L~~A~~~~~~~iv~  326 (507)
                      .+|.+|+||||+|+++|+.+++|
T Consensus       205 ~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         205 LKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             CCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHhCCCccccC
Confidence            99999999999999999998875

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.97  E-value=1.3e-31  Score=251.93  Aligned_cols=214  Identities=15%  Similarity=0.155  Sum_probs=145.3

Q ss_pred             CcccHHHHHHHcCCChhhHHH--------HhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCc
Q 041247            3 NILSGLGWVMTNGIKEAPRVL--------LSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNT   74 (507)
Q Consensus         3 ~g~t~L~~A~~~g~~~~v~~L--------l~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t   74 (507)
                      +|.||||+||..|+.+++++|        +++|++++.+|.+|+||||+|+..|+.+++++|++. +++++.+ |.+|.|
T Consensus        32 ~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~-Gad~n~~-~~~g~t  109 (277)
T d2fo1e1          32 HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKA-GADPTIY-NKSERS  109 (277)
T ss_dssp             SCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSCCC-CTTCCC
T ss_pred             CCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeecccccccccccccccccc-ccccccc-cccccc
Confidence            589999999999999999877        567999999999999999999999999999988875 8899988 999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCC-chhhcccccCCCcHHHHHHHcCcH---HHHHHHHhcCCCC-------CccCCCCCCh
Q 041247           75 ALHVAAQANCIDFVKELLKMMS-TEDLAKKNKIGCTAFFYAAASGMV---EIVEEMMKGNKDI-------AMVPDMDGTL  143 (507)
Q Consensus        75 ~Lh~Aa~~g~~e~v~~Ll~~~~-~~~~~~~d~~g~t~Lh~A~~~g~~---~iv~~Ll~~~~~~-------~~~~~~~g~t  143 (507)
                      |||+|+..++.++++.+..... ...++..+..+.++.+.+...+..   ..++.+.+.....       ....+..|.|
T Consensus       110 ~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  189 (277)
T d2fo1e1         110 ALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRT  189 (277)
T ss_dssp             HHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCC
T ss_pred             cccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCC
Confidence            9999999999999999987620 134677888999999999887653   4555555543322       1223344555


Q ss_pred             HHHHHHHcCcHHHHHHHHhccc--cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCC
Q 041247          144 PIVRAAALEQGQMVLLLHKQTK--NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDL  219 (507)
Q Consensus       144 pL~~A~~~g~~~~v~~Ll~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~  219 (507)
                      |||.++..++.+++++++....  .+.+|..|.||||.|++.|+.+++++|++. +.+++.+|.+|+||||+|+++|+
T Consensus       190 ~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~-gadin~~d~~G~T~L~~A~~~~~  266 (277)
T d2fo1e1         190 ALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ-GASVEAVDATDHTARQLAQANNH  266 (277)
T ss_dssp             THHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSSCCCSSSCCHHHHHHHTTC
T ss_pred             ccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHC-cCCCCCcCCCCCCHHHHHHHcCC
Confidence            5555555555555544333222  333444444444444444444444444443 33344444444444444444444

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.97  E-value=9.9e-32  Score=254.79  Aligned_cols=231  Identities=18%  Similarity=0.129  Sum_probs=191.1

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHH
Q 041247           70 NLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAA  149 (507)
Q Consensus        70 ~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~  149 (507)
                      .++.||||.||+.|+.++|++|+++  |++++.+|.+|.||||+|+..|+.+++++|++++++. ...+..+.+||+.|+
T Consensus        38 ~~~~t~l~~A~~~G~~~~v~~Ll~~--Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~-~~~~~~~~~~L~~a~  114 (291)
T d1s70b_          38 FDDGAVFLAACSSGDTEEVLRLLER--GADINYANVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAA  114 (291)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHH--CCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred             CCCchHHHHHHHcCCHHHHHHHHHC--CCCCCccCCCCCcHHHHHHhcCCceeeeeeccccccc-ccccccccccccccc
Confidence            3456999999999999999999999  8999999999999999999999999999999999986 778889999999999


Q ss_pred             HcCcHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCccccccccc
Q 041247          150 ALEQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRG  228 (507)
Q Consensus       150 ~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~  228 (507)
                      ..++.++++.|++.+. ....+.++.++++.|+..++.+.++.++...+.........+..+.+                
T Consensus       115 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~----------------  178 (291)
T d1s70b_         115 SCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIML----------------  178 (291)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH----------------
T ss_pred             cccccchhhcccccCcccccccccCccccccccccccchhcccccccccccccccccccccccc----------------
Confidence            9999999999999998 77889999999999999999999999887643332222222221111                


Q ss_pred             cccccccchhhhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCcccccccccC
Q 041247          229 TFFQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDEN  308 (507)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~  308 (507)
                                         ......+...   ..+.    ......|.||||.|+..|+.++++.|++.|+++ +.+|..
T Consensus       179 -------------------~~~~~~~~~~---~~~~----~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~di-n~~~~~  231 (291)
T d1s70b_         179 -------------------RDARQWLNSG---HIND----VRHAKSGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYD  231 (291)
T ss_dssp             -------------------HHHHHHHHHT---CCCC----CCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTT
T ss_pred             -------------------ccchhhhccc---cccc----ccccCCCCChhhHHHHcCChhhhcccccceecc-cccccC
Confidence                               1111111111   1111    112233499999999999999999999999998 999999


Q ss_pred             CCchHHHHHHhCchHHHHHHHhchhhhhhhhccccCCCCCcC
Q 041247          309 GYTIFHVAVLNRLEELFKFIYDAKSIADLMVDSNDGEGEMFD  350 (507)
Q Consensus       309 g~t~L~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~d~~g~t~~  350 (507)
                      |+||||+|++.|+.++|++|+++|+++    +.+|..|+|.+
T Consensus       232 g~TpL~~A~~~g~~~iv~lLl~~Gadv----~~~d~~G~TaL  269 (291)
T d1s70b_         232 GWTPLHAAAHWGKEEACRILVENLCDM----EAVNKVGQTAF  269 (291)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCT----TCCCTTSCCTT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCC----CCcCCCCCCHH
Confidence            999999999999999999999999998    78999999933

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.4e-31  Score=241.52  Aligned_cols=199  Identities=17%  Similarity=0.146  Sum_probs=164.4

Q ss_pred             CCCcHHHHHHHcCCHHH----HHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHH
Q 041247           71 LGNTALHVAAQANCIDF----VKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIV  146 (507)
Q Consensus        71 ~g~t~Lh~Aa~~g~~e~----v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~  146 (507)
                      +|+||||+|+..|+.++    ++.+...  ++++|.+|.+|+||||+|+..|+.+++++|++.|+++ +.+|..|.|||+
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~--~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~-~~~d~~g~t~l~   77 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGD--LAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLH   77 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-------CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhC--CCCcccCCCCCCccccccccccccccccccccccccc-cccccccccccc
Confidence            58999999999998644    4455555  7789999999999999999999999999999999996 889999999999


Q ss_pred             HHHHcCcHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCcccccc
Q 041247          147 RAAALEQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQN  225 (507)
Q Consensus       147 ~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~  225 (507)
                      .|+..|+.++++.|++.+. ...                            ..........|.||||.|+..++      
T Consensus        78 ~~~~~~~~~~~~~l~~~~~~~~~----------------------------~~~~~~~~~~~~t~l~~a~~~~~------  123 (221)
T d1iknd_          78 LACEQGCLASVGVLTQSCTTPHL----------------------------HSILKATNYNGHTCLHLASIHGY------  123 (221)
T ss_dssp             HHHHHTCHHHHHHHHHSTTTTSS----------------------------SCGGGCCCTTCCCHHHHHHHTTC------
T ss_pred             cccccccccccchhhhhcccccc----------------------------cccccccccccchhhhHHhhcCC------
Confidence            9999999999999988764 111                            12233456678899999999998      


Q ss_pred             ccccccccccchhhhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCccccccc
Q 041247          226 RRGTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKC  305 (507)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~  305 (507)
                                            .+.++++.+.+. ..+.   ..+.+  |.||||+|++.|+.+++++|+++|+|+ +.+
T Consensus       124 ----------------------~~~~~~l~~~~~-~~~~---~~~~~--G~T~L~~A~~~g~~~~v~~Ll~~gad~-~~~  174 (221)
T d1iknd_         124 ----------------------LGIVELLVSLGA-DVNA---QEPCN--GRTALHLAVDLQNPDLVSLLLKCGADV-NRV  174 (221)
T ss_dssp             ----------------------HHHHHHHHHHTC-CTTC---CCTTT--CCCHHHHHHHTTCHHHHHHHHTTTCCS-CCC
T ss_pred             ----------------------hhheeeecccCc-cccc---ccccC--CCCccccccccccHHHHHHHHhcCCcc-ccc
Confidence                                  899999988877 5553   12233  499999999999999999999999997 999


Q ss_pred             ccCCCchHHHHHHhCchHHHHHHHhchhhh
Q 041247          306 DENGYTIFHVAVLNRLEELFKFIYDAKSIA  335 (507)
Q Consensus       306 d~~g~t~L~~A~~~~~~~iv~~Ll~~ga~~  335 (507)
                      |.+|+||||+|++.++.+++++|++.+.+.
T Consensus       175 ~~~G~tpl~~A~~~~~~~~~~~l~~~~~~~  204 (221)
T d1iknd_         175 TYQGYSPYQLTWGRPSTRIQQQLGQLTLEN  204 (221)
T ss_dssp             CTTCCCGGGGCTTSSCHHHHHHHHTTSCGG
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHHcCCcc
Confidence            999999999999999999999999987654

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.4e-30  Score=232.59  Aligned_cols=215  Identities=20%  Similarity=0.169  Sum_probs=193.9

Q ss_pred             CCcccHHHHHHHcCCChhhHHHHh----CCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHH
Q 041247            2 DNILSGLGWVMTNGIKEAPRVLLS----NGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALH   77 (507)
Q Consensus         2 ~~g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh   77 (507)
                      |||+||||+||.+|+.++++.|++    +|++++..|..|+||||+|+..|+.+++++|++. +++.+.. +..|.++++
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~-ga~~~~~-~~~~~~~~~   78 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA-GASPMAL-DRHGQTAAH   78 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTSCCHHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhcccccccccccccc-ccccccc-ccccccccc
Confidence            799999999999999999998874    8888999999999999999999999999988874 7777777 888999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCc--hhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHH
Q 041247           78 VAAQANCIDFVKELLKMMST--EDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQ  155 (507)
Q Consensus        78 ~Aa~~g~~e~v~~Ll~~~~~--~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~  155 (507)
                      .|...++.++++.+......  ...+.......++|+.+.........+.|.....+.....+..+.+||+.|+..+..+
T Consensus        79 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~  158 (228)
T d1k1aa_          79 LACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLS  158 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH
T ss_pred             cccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhh
Confidence            99999999999988876411  1244556678899999999999999999999888876778889999999999999999


Q ss_pred             HHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCC
Q 041247          156 MVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDL  219 (507)
Q Consensus       156 ~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~  219 (507)
                      +++.+++.+. ...+|.+|.||||.|+..|+.+++++|+++ +.+++.+|.+|+||||+|+++|+
T Consensus       159 ~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-Gad~n~~d~~G~TpL~~A~~~~~  222 (228)
T d1k1aa_         159 MVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRS-GADSSLKNCHNDTPLMVARSRRV  222 (228)
T ss_dssp             HHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCTTTTCSSHHH
T ss_pred             hhhhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHhCCC
Confidence            9999999998 788899999999999999999999999988 67788999999999999999988

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2e-30  Score=235.36  Aligned_cols=194  Identities=19%  Similarity=0.112  Sum_probs=169.4

Q ss_pred             CcccHHHHHHHcCCChh----hHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHH
Q 041247            3 NILSGLGWVMTNGIKEA----PRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHV   78 (507)
Q Consensus         3 ~g~t~L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~   78 (507)
                      ||.||||+|+..|+.++    ++++..+|.+++.+|.+|+||||+|+..|+.+++++|++ .+.+++.+ |..|.||||.
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~-~g~d~~~~-d~~g~t~l~~   78 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG-AGCDPELR-DFRGNTPLHL   78 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCS-CCCCSCCC-CTTCCCHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccccccccccc-cccccccc-cccccccccc
Confidence            69999999999999655    455666788888999999999999999999999997776 47888888 9999999999


Q ss_pred             HHHcCCHHHHHHHHHcCC----chhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcH
Q 041247           79 AAQANCIDFVKELLKMMS----TEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQG  154 (507)
Q Consensus        79 Aa~~g~~e~v~~Ll~~~~----~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~  154 (507)
                      |+..|+.++++.|++...    ..........|.||||.|+..++.+++++|++.++.+....+.+|.||||+|++.|+.
T Consensus        79 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~  158 (221)
T d1iknd_          79 ACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNP  158 (221)
T ss_dssp             HHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCH
T ss_pred             ccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccH
Confidence            999999999999998731    1224455667899999999999999999999999998666678899999999999999


Q ss_pred             HHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHHHhcCch
Q 041247          155 QMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLLRDRPR  198 (507)
Q Consensus       155 ~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~  198 (507)
                      +++++|++.|+ .+.+|.+|.||||+|++.++.+++++|++...+
T Consensus       159 ~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         159 DLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             HHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             HHHHHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCc
Confidence            99999999999 889999999999999999999999999987444

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.96  E-value=2e-29  Score=226.54  Aligned_cols=204  Identities=17%  Similarity=0.164  Sum_probs=172.9

Q ss_pred             HHHHHHHHHcCCchhhcc-cccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhc
Q 041247           85 IDFVKELLKMMSTEDLAK-KNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQ  163 (507)
Q Consensus        85 ~e~v~~Ll~~~~~~~~~~-~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~  163 (507)
                      .|+|++|+++  |++++. .|.+|+||||+||..|+.+++++|++.|+++ +.++..+.++++.++..++.+........
T Consensus         2 ~~~v~~Ll~~--g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~-n~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (209)
T d1ot8a_           2 AQVISDLLAQ--GAELNATMDKTGETSLHLAARFARADAAKRLLDAGADA-NSQDNTGRTPLHAAVAADAMGVFQILLRN   78 (209)
T ss_dssp             HHHHHHHHHH--HHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred             HHHHHHHHHC--CCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccc-ccccccccccccccccccccccccccccc
Confidence            4789999998  888886 5888999999999999999999999988886 78888888999998888887776666665


Q ss_pred             cc--cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCccccccccccccccccchhhhh
Q 041247          164 TK--NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEK  241 (507)
Q Consensus       164 ~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (507)
                      ..  .......+.++.+.+.........+.|.+. +.+++.++..|+|||+.++..+.                      
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~~~~~~t~l~~~~~~~~----------------------  135 (209)
T d1ot8a_          79 RATNLNARMHDGTTPLILAARLAIEGMVEDLITA-DADINAADNSGKTALHWAAAVNN----------------------  135 (209)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHT-TCCTTCBCTTSCBHHHHHHHTTC----------------------
T ss_pred             cccccccccccccccccccccccchhhhhhhhhh-cccccccCCCCCCcchhhcccCc----------------------
Confidence            54  444566677888888888888888877776 56677889999999999999998                      


Q ss_pred             hhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHHCcccccccccCCCchHHHHHHhCc
Q 041247          242 EENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIREYADLMRKCDENGYTIFHVAVLNRL  321 (507)
Q Consensus       242 ~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~  321 (507)
                            .++++.+++.+. +++.    .+.+  |.||||+|+.+|+.+++++|+++|+|+ +.+|..|+||||+|+++|+
T Consensus       136 ------~~~~~~l~~~~~-~~~~----~d~~--g~TpL~~A~~~g~~~~v~~Ll~~gad~-n~~d~~g~Tpl~~A~~~~~  201 (209)
T d1ot8a_         136 ------TEAVNILLMHHA-NRDA----QDDK--DETPLFLAAREGSYEASKALLDNFANR-EITDHMDRLPRDVASERLH  201 (209)
T ss_dssp             ------HHHHHHHHHTTC-CTTC----CCTT--CCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC
T ss_pred             ------ceeeeeeccccc-cccc----cccc--cccccchhccccHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCC
Confidence                  899999998877 6654    3444  499999999999999999999999998 8999999999999999999


Q ss_pred             hHHHHHH
Q 041247          322 EELFKFI  328 (507)
Q Consensus       322 ~~iv~~L  328 (507)
                      .++|++|
T Consensus       202 ~~iv~lL  208 (209)
T d1ot8a_         202 HDIVRLL  208 (209)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhhc
Confidence            9999986

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.96  E-value=3.1e-31  Score=257.03  Aligned_cols=244  Identities=11%  Similarity=0.032  Sum_probs=127.6

Q ss_pred             cccCCHHhHHHHHcCCHHHHHHH--HhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccc--cCCCc
Q 041247           34 DSLRRLKLYRAALNGDWAVAKDI--YDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKN--KIGCT  109 (507)
Q Consensus        34 ~~~g~t~Lh~Aa~~g~~~~v~~l--l~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d--~~g~t  109 (507)
                      +..|.||||+||.+|+.++++++  |.+.+++++.+ |.+|+||||+||+.||.++|++|+++  |++++..+  ..|+|
T Consensus        87 ~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~-~~~g~taL~~Aa~~G~~~~v~~Ll~~--g~~~~~~~~~~~g~t  163 (346)
T d2ajaa1          87 GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVI-QAENYQAFRLAAENGHLHVLNRLCEL--APTEIMAMIQAENYH  163 (346)
T ss_dssp             TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC---CHHHHHHHHHHHHTTCHHHHHHHHHS--CTTTHHHHHSHHHHH
T ss_pred             cCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCccccc-CCCCCCHHHHHHHCCCHHHHHHHHHc--CCCccccccccCCCC
Confidence            34455555555555555554432  33345555554 55555555555555555555555555  44444433  23555


Q ss_pred             HHHHHHHcCcHHHHHHHHhcCCCCC--ccCCCCCChHHHHHHHcCcHHHHHHHHhccccccCCCChhhHHHHHHHcCChH
Q 041247          110 AFFYAAASGMVEIVEEMMKGNKDIA--MVPDMDGTLPIVRAAALEQGQMVLLLHKQTKNSLTDDDCIELLVQLIETGFYV  187 (507)
Q Consensus       110 ~Lh~A~~~g~~~iv~~Ll~~~~~~~--~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~  187 (507)
                      |||+|+..|+.+++++|++.|++..  +..+.++.||++.|+++|+.+++++|++.++      +..++.+.+...++.+
T Consensus       164 ~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga------~~~~~~~~~~~~~~~~  237 (346)
T d2ajaa1         164 AFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV------MLAYAEIHEFEYGEKY  237 (346)
T ss_dssp             HHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH------HHHHHHHCTTTTTTTT
T ss_pred             hhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCC------CcchHHHHHHHcCcHh
Confidence            5555555555555555555554321  1222334455555555555555555555543      1112333333334434


Q ss_pred             HHHHHHhcCchhhhhcccCCchHHHHHHhcCCccccccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhccchhhH
Q 041247          188 VALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSE  267 (507)
Q Consensus       188 ~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~  267 (507)
                      +...++....     ...++.++++.+...+..+                            ++           +....
T Consensus       238 ~~~~~~~~~~-----~~~~~~~~l~~a~~~~~~~----------------------------~~-----------~~~~~  273 (346)
T d2ajaa1         238 VNPFIARHVN-----RLKEMHDAFKLSNPDGVFD----------------------------LV-----------TKSEC  273 (346)
T ss_dssp             HHHHHHHHHH-----HHHHHHTTTTTTSSSSCCC----------------------------CS-----------SHHHH
T ss_pred             hhHHHHHhhc-----cchHHHHHHHHhcccccHh----------------------------HH-----------hcccc
Confidence            3333332210     1111223333333333211                            00           00000


Q ss_pred             HhhhhcCCChHHHHHHHcCcHHHHHHHHHHCcccc----cccccCCCchHHHHHHhCchHHHHHHHhch
Q 041247          268 ISKLIARPTRLIFDAAKRGNVLFLLILIREYADLM----RKCDENGYTIFHVAVLNRLEELFKFIYDAK  332 (507)
Q Consensus       268 ~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~----~~~d~~g~t~L~~A~~~~~~~iv~~Ll~~g  332 (507)
                      .....+  .++++.|+..|+.+++++|++.+....    +..+.+|+||||+|++.|+.++|++|++..
T Consensus       274 ~~~~~~--~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~p  340 (346)
T d2ajaa1         274 LQGFYM--LRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIP  340 (346)
T ss_dssp             HHHHHH--HHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSH
T ss_pred             cccchh--hhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHHHHcCcHHHHHHHhCCC
Confidence            111112  689999999999999999998766431    234567999999999999999999999864

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.95  E-value=1.3e-31  Score=259.64  Aligned_cols=244  Identities=11%  Similarity=0.018  Sum_probs=168.2

Q ss_pred             CcccHHHHHHHcCCChhhHH---HHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccc-cCCCCCcHHHH
Q 041247            3 NILSGLGWVMTNGIKEAPRV---LLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQE-ITNLGNTALHV   78 (507)
Q Consensus         3 ~g~t~L~~A~~~g~~~~v~~---Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~-~~~~g~t~Lh~   78 (507)
                      +|.||||+||++||.+++++   |++.|++++..|..|+||||+||++|+.+++++|++. +++++.. .+.+|+||||+
T Consensus        89 ~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~-g~~~~~~~~~~~g~t~L~~  167 (346)
T d2ajaa1          89 KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCEL-APTEIMAMIQAENYHAFRL  167 (346)
T ss_dssp             CHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHS-CTTTHHHHHSHHHHHHHHH
T ss_pred             CCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCccccccccCCCChhHH
Confidence            68899999999999877665   7899999999999999999999999999999999876 6666654 13468999999


Q ss_pred             HHHcCCHHHHHHHHHcCCchh---hcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHH
Q 041247           79 AAQANCIDFVKELLKMMSTED---LAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQ  155 (507)
Q Consensus        79 Aa~~g~~e~v~~Ll~~~~~~~---~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~  155 (507)
                      |+..||.++|++|++.  +.+   .+..+..|.||+|.|+.+|+.+++++|++.|+++ +       +|.+.+...++.+
T Consensus       168 Aa~~g~~~iv~~Ll~~--~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~-~-------~~~~~~~~~~~~~  237 (346)
T d2ajaa1         168 AAENGHLHVLNRLCEL--APTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVML-A-------YAEIHEFEYGEKY  237 (346)
T ss_dssp             HHHTTCHHHHHHHHHS--CGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHH-H-------HHHHCTTTTTTTT
T ss_pred             HHHHhhHHHHHHHHHc--CCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCc-c-------hHHHHHHHcCcHh
Confidence            9999999999999998  433   4555667788999999999999999999998774 2       4555555555555


Q ss_pred             HHHHHHhccccccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHHhcCCcccccccccccccccc
Q 041247          156 MVLLLHKQTKNSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLARKDLTSTNQNRRGTFFQRCF  235 (507)
Q Consensus       156 ~v~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~  235 (507)
                      +..++.......   ..+.++++.+...+..+++.       .........+.++++.++..+.                
T Consensus       238 ~~~~~~~~~~~~---~~~~~~l~~a~~~~~~~~~~-------~~~~~~~~~~~~~l~~a~~~~~----------------  291 (346)
T d2ajaa1         238 VNPFIARHVNRL---KEMHDAFKLSNPDGVFDLVT-------KSECLQGFYMLRNLIRRNDEVL----------------  291 (346)
T ss_dssp             HHHHHHHHHHHH---HHHHTTTTTTSSSSCCCCSS-------HHHHHHHHHHHHHHHHHCCGGG----------------
T ss_pred             hhHHHHHhhccc---hHHHHHHHHhcccccHhHHh-------cccccccchhhhHHHHHhcCCh----------------
Confidence            555444332200   00111222222222222111       0111222335678888888887                


Q ss_pred             chhhhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcHHHHHHHHHH
Q 041247          236 NLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNVLFLLILIRE  297 (507)
Q Consensus       236 ~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~~iv~~Ll~~  297 (507)
                                  .+++++|++.+. .... .......+.|+||||+|++.|+.++|++|++.
T Consensus       292 ------------ld~v~~Ll~~~~-~~~~-~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         292 ------------LDDIRFLLSIPG-IKAL-APTATIPGDANELLRLALRLGNQGACALLLSI  339 (346)
T ss_dssp             ------------HHHHHHHHTSTT-TGGG-SSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred             ------------HHHHHHHHhCcC-hhhh-cccccCCCCCCcHHHHHHHcCcHHHHHHHhCC
Confidence                        889999887553 1111 11223344568999999999999999999864

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.95  E-value=4.8e-28  Score=217.43  Aligned_cols=206  Identities=21%  Similarity=0.194  Sum_probs=154.2

Q ss_pred             HHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhc
Q 041247           50 WAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKG  129 (507)
Q Consensus        50 ~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~  129 (507)
                      .|+|++|++. +.+++.+.|.+|+||||+||+.|+.|++++|++.  +++++.+|..+.++++.++..++.+........
T Consensus         2 ~~~v~~Ll~~-g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~--g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (209)
T d1ot8a_           2 AQVISDLLAQ-GAELNATMDKTGETSLHLAARFARADAAKRLLDA--GADANSQDNTGRTPLHAAVAADAMGVFQILLRN   78 (209)
T ss_dssp             HHHHHHHHHH-HHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred             HHHHHHHHHC-CCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhh--ccccccccccccccccccccccccccccccccc
Confidence            4677777764 6677764477788888888888888888888877  677778888888888888877777777666666


Q ss_pred             CCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCc
Q 041247          130 NKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEE  208 (507)
Q Consensus       130 ~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~  208 (507)
                      ...........|.++.+.+.........+.|.+.+. .+..+..|.||++.++..+..++++.+++. +..++.+|.+|.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~-~~~~~~~d~~g~  157 (209)
T d1ot8a_          79 RATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMH-HANRDAQDDKDE  157 (209)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCC
T ss_pred             cccccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccc-cccccccccccc
Confidence            555445566667777777777777777777777776 666777778888888888888888777777 455667788888


Q ss_pred             hHHHHHHhcCCccccccccccccccccchhhhhhhhHHHHHHHHHHHHHHhhccchhhHHhhhhcCCChHHHHHHHcCcH
Q 041247          209 TALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKEENKQALELVESLWTEVVLSSESVSEISKLIARPTRLIFDAAKRGNV  288 (507)
Q Consensus       209 t~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~~g~~  288 (507)
                      ||||+|+..|+                            .++++.|+++++ +++.    .+.+|  +||||+|+++|+.
T Consensus       158 TpL~~A~~~g~----------------------------~~~v~~Ll~~ga-d~n~----~d~~g--~Tpl~~A~~~~~~  202 (209)
T d1ot8a_         158 TPLFLAAREGS----------------------------YEASKALLDNFA-NREI----TDHMD--RLPRDVASERLHH  202 (209)
T ss_dssp             CHHHHHHHTTC----------------------------HHHHHHHHHTTC-CTTC----CCTTS--CCHHHHHHHTTCH
T ss_pred             cccchhccccH----------------------------HHHHHHHHHCCC-CCCC----cCCCC--CCHHHHHHHcCCH
Confidence            88888888888                            888888888777 6554    33334  7888888888888


Q ss_pred             HHHHHH
Q 041247          289 LFLLIL  294 (507)
Q Consensus       289 ~iv~~L  294 (507)
                      ++|++|
T Consensus       203 ~iv~lL  208 (209)
T d1ot8a_         203 DIVRLL  208 (209)
T ss_dssp             HHHHHH
T ss_pred             HHHhhc
Confidence            888765

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.9e-27  Score=203.08  Aligned_cols=154  Identities=19%  Similarity=0.218  Sum_probs=137.5

Q ss_pred             cHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCH
Q 041247            6 SGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCI   85 (507)
Q Consensus         6 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~   85 (507)
                      +|||+||..|+.++|++|+++|++++.+|..|.||||.|+ .|+.+++++|++. +++++.+ +..|.+|++.++..++.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~-~a~~~~~-~~~~~~~l~~~~~~~~~   79 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLR-GANPDLK-DRTGFAVIHDAARAGFL   79 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHHTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-ccccccccccccc-ccccccc-cccCccccccccccccc
Confidence            7899999999999999999999999889999999999775 7899999988865 6778877 88899999999999999


Q ss_pred             HHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhcc
Q 041247           86 DFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQT  164 (507)
Q Consensus        86 e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~  164 (507)
                      +.++.|++.  +.+++..|..|.+|+|+|+..++.+++++|+++++...+.+|.+|.||||+|++.|+.+++++|+++|
T Consensus        80 ~~~~~l~~~--~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          80 DTLQTLLEF--QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             ccccccccc--cccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            999999988  67888889999999999999999999999999988545888999999999999999999999998875

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.2e-26  Score=198.03  Aligned_cols=150  Identities=21%  Similarity=0.239  Sum_probs=80.1

Q ss_pred             HHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcC
Q 041247           39 LKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASG  118 (507)
Q Consensus        39 t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g  118 (507)
                      ++||+||..|+.++++.|+++ +.+++.+ |.+|.||||+|+ .|+.|++++|+++  +++++.++..|.++++.++..+
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~-g~d~n~~-d~~g~TpL~~A~-~~~~ei~~~Ll~~--~a~~~~~~~~~~~~l~~~~~~~   77 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQN-NVNVNAQ-NGFGRTALQVMK-LGNPEIARRLLLR--GANPDLKDRTGFAVIHDAARAG   77 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTS-CCCTTCC-CTTSCCHHHHCC-SSCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHC-CCCcCcc-CCcccccccccc-ccccccccccccc--ccccccccccCccccccccccc
Confidence            455555555555555554442 4555554 555555555443 4555555555555  4555555555555555555555


Q ss_pred             cHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc--cccCCCChhhHHHHHHHcCChHHHHHHHh
Q 041247          119 MVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK--NSLTDDDCIELLVQLIETGFYVVALQLLR  194 (507)
Q Consensus       119 ~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  194 (507)
                      +.+.++.|++.+.+. +..|..|.+|+|+|+..++.+++++|+++++  .+.+|.+|+||||+|++.++.+++++|++
T Consensus        78 ~~~~~~~l~~~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~  154 (156)
T d1ihba_          78 FLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA  154 (156)
T ss_dssp             CHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             ccccccccccccccc-cccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            555555555555554 4455555555555555555555555555554  33444555555555555555555555544

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.5e-26  Score=197.32  Aligned_cols=150  Identities=19%  Similarity=0.208  Sum_probs=95.6

Q ss_pred             HHHHHHHcCCChhhHHHHhC-CCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCH
Q 041247            7 GLGWVMTNGIKEAPRVLLSN-GGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCI   85 (507)
Q Consensus         7 ~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~   85 (507)
                      .|+.||..|+.++|++|+++ +.+++..|..|+||||+|+ .|+.+++++|++. +.+++.. +..|.+|++.|+..++.
T Consensus         5 ~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~-~~~~~~~-~~~~~~~l~~~~~~~~~   81 (156)
T d1bd8a_           5 RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQ-GASPNVQ-DTSGTSPVHDAARTGFL   81 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-ccccccccccccc-ccccccc-ccccccccccccccccc
Confidence            36666666666666666654 4455556666666666654 3566666666643 4555555 55666666666666666


Q ss_pred             HHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhc
Q 041247           86 DFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQ  163 (507)
Q Consensus        86 e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~  163 (507)
                      ++++.++++  +.+++.+|..|+||||+|+..|+.+++++|+ .++++ +.+|.+|+||||+|++.|+.+++++|+++
T Consensus        82 ~~~~~~l~~--~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~-~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          82 DTLKVLVEH--GADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDL-HRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHHT--TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCT-TCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             ccccccccc--ccccccccCCCCeeecccccccccccccccc-ccccc-cccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            666666666  5666666666666666666666666666655 45554 56666666666666666666666666653

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=2.8e-26  Score=194.97  Aligned_cols=151  Identities=23%  Similarity=0.236  Sum_probs=136.0

Q ss_pred             cccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcC
Q 041247            4 ILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQAN   83 (507)
Q Consensus         4 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g   83 (507)
                      +.||||.||+.|+.++|++|+++|++.+ .|..|.||||+|+..++.++++.++... ...... +..+.++++.++...
T Consensus         2 ~~t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~   78 (153)
T d1awcb_           2 LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAG-VSRDAR-TKVDRTPLHMAASEG   78 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTT-CCTTCC-CTTCCCHHHHHHHHT
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCcccccccccccccccccccccc-cccccc-ccccccccccccccc
Confidence            4599999999999999999999997654 7899999999999999999999777653 333444 677889999999999


Q ss_pred             CHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHH
Q 041247           84 CIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLL  160 (507)
Q Consensus        84 ~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L  160 (507)
                      +.++++++.++  +.+.+.+|.+|+||||+|+..|+.+++++|++.|+++ +.+|.+|.||||+|+.+|+.|++++|
T Consensus        79 ~~~~~~~l~~~--~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~-~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          79 HANIVEVLLKH--GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV-HTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             CHHHHHHHHTT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cceeeeccccc--CCccccccccCchHHHhhhhcchhheeeeccccccCC-cccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            99999999998  7889999999999999999999999999999999997 88999999999999999999999876

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4.7e-26  Score=194.27  Aligned_cols=152  Identities=22%  Similarity=0.252  Sum_probs=141.5

Q ss_pred             HHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcC
Q 041247           39 LKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASG  118 (507)
Q Consensus        39 t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g  118 (507)
                      ..||.||..|+.+++++|+++.+.+++.+ |..|+||||+|+ .|+.+++++|+++  +.+++..+..|.+|++.++..+
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~-d~~g~t~L~~A~-~~~~~~v~~Ll~~--~~~~~~~~~~~~~~l~~~~~~~   79 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDAL-NRFGKTALQVMM-FGSTAIALELLKQ--GASPNVQDTSGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCC-CTTSCCHHHHSC-TTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCcc-CCCCCccccccc-ccccccccccccc--cccccccccccccccccccccc
Confidence            45999999999999999999888999998 999999999986 5899999999999  7899999999999999999999


Q ss_pred             cHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccccccCCCChhhHHHHHHHcCChHHHHHHHhc
Q 041247          119 MVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTKNSLTDDDCIELLVQLIETGFYVVALQLLRD  195 (507)
Q Consensus       119 ~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  195 (507)
                      +.++++.++++++++ +.+|..|.||||+|+..|+.+++++|++....+.+|.+|+||||+|++.|+.+++++|+++
T Consensus        80 ~~~~~~~~l~~~~~~-n~~~~~~~t~L~~A~~~~~~~i~~~L~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          80 FLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             CHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             ccccccccccccccc-ccccCCCCeeeccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            999999999999997 8899999999999999999999998885333888999999999999999999999999875

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=2.6e-26  Score=218.06  Aligned_cols=189  Identities=13%  Similarity=0.111  Sum_probs=110.3

Q ss_pred             hhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcH-------HHHHHHHhcCCCC
Q 041247           61 KVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMV-------EIVEEMMKGNKDI  133 (507)
Q Consensus        61 ~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~-------~iv~~Ll~~~~~~  133 (507)
                      +.+++.+.|.+|+||||+||..|+.++|++|+++  |++++.+|..|+||||.|+..++.       ++++++.+   .+
T Consensus        96 ~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~--gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~---~~  170 (301)
T d1sw6a_          96 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKH--GSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP---CL  170 (301)
T ss_dssp             CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG---GG
T ss_pred             CCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhh---hh
Confidence            3455555577778888888888888888888877  677777787888888888766542       34444432   22


Q ss_pred             CccCCCCCChHHHHHHHcCcH----HHHHHHHhccccccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCch
Q 041247          134 AMVPDMDGTLPIVRAAALEQG----QMVLLLHKQTKNSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEET  209 (507)
Q Consensus       134 ~~~~~~~g~tpL~~A~~~g~~----~~v~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t  209 (507)
                       ..+|..|+||||.++..+..    ..+++.+                        ..++..+++............+.+
T Consensus       171 -~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~------------------------~~~~~~l~~~~~~~~~~~~~~~~~  225 (301)
T d1sw6a_         171 -ILEDSMNRTILHHIIITSGMTGCSAAAKYYL------------------------DILMGWIVKKQNRPIQSGTNEKES  225 (301)
T ss_dssp             -GEECTTCCCHHHHHHHHHTSTTCHHHHHHHH------------------------HHHHHHHHHGGGCCEEEC------
T ss_pred             -hhcccccCCHHHHHHHHhCccccHHHHHHHH------------------------HHHHHHHHhcCCcchhcccccccc
Confidence             45667777777777654321    2222111                        122334444433333334444555


Q ss_pred             HHHHHHhcCCccccccccccccccccchhhhhhhhHHHHHHHH-----HHHHHHhhccchhhHHhhhhcCCChHHHHHHH
Q 041247          210 ALHVLARKDLTSTNQNRRGTFFQRCFNLGAEKEENKQALELVE-----SLWTEVVLSSESVSEISKLIARPTRLIFDAAK  284 (507)
Q Consensus       210 ~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-----~Ll~~~~~~~~~~~~~~~~~g~g~t~Lh~A~~  284 (507)
                      +++.+.....                            ....+     .++..   .+|    .+|.+|  +||||+|++
T Consensus       226 ~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~---~in----~~D~~G--~TpLh~A~~  268 (301)
T d1sw6a_         226 KPNDKNGERK----------------------------DSILENLDLKWIIAN---MLN----AQDSNG--DTCLNIAAR  268 (301)
T ss_dssp             --------------------------------------CHHHHHCSHHHHHHH---TTT----CCCTTS--CCHHHHHHH
T ss_pred             hhHHHHhcch----------------------------HHHHHHHhhHHHHhc---Ccc----CCCCCC--CCHHHHHHH
Confidence            5555544433                            11111     11111   122    234444  999999999


Q ss_pred             cCcHHHHHHHHHHCcccccccccCCCchHHHHH
Q 041247          285 RGNVLFLLILIREYADLMRKCDENGYTIFHVAV  317 (507)
Q Consensus       285 ~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~  317 (507)
                      +|+.++|++|+++|+++ +.+|..|+||||+|+
T Consensus       269 ~g~~~iv~~Ll~~GAd~-~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         269 LGNISIVDALLDYGADP-FIANKSGLRPVDFGA  300 (301)
T ss_dssp             HCCHHHHHHHHHTTCCT-TCCCTTSCCGGGGTC
T ss_pred             cCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHcC
Confidence            99999999999999998 999999999999985

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=2.7e-24  Score=182.52  Aligned_cols=149  Identities=24%  Similarity=0.225  Sum_probs=136.9

Q ss_pred             CHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHc
Q 041247           38 RLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAAS  117 (507)
Q Consensus        38 ~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~  117 (507)
                      .||||.|++.|+.++++.||++ +++++ . |..|+||||+|+..++.++++.++..  +......+..+.++++.++..
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~-ga~~~-~-~~~g~t~L~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~   77 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMAN-GAPFT-T-DWLGTSPLHLAAQYGHFSTTEVLLRA--GVSRDARTKVDRTPLHMAASE   77 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHH-TCCCC-C-CTTCCCHHHHHHHHTCHHHHHHHHTT--TCCTTCCCTTCCCHHHHHHHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHc-CCCcc-c-ccCCCccccccccccccccccccccc--ccccccccccccccccccccc
Confidence            4899999999999999999976 56665 4 89999999999999999999999988  566667788889999999999


Q ss_pred             CcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc-cccCCCChhhHHHHHHHcCChHHHHHH
Q 041247          118 GMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK-NSLTDDDCIELLVQLIETGFYVVALQL  192 (507)
Q Consensus       118 g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~L  192 (507)
                      .+.++++++.+.+.+. +.+|.+|.||||+|+..|+.+++++|++.|+ ++..|.+|.||||+|+.+|+.++++.|
T Consensus        78 ~~~~~~~~l~~~~~~~-~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          78 GHANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             TCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccceeeecccccCCcc-ccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            9999999999999996 8899999999999999999999999999999 888999999999999999999999765

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.3e-24  Score=177.41  Aligned_cols=122  Identities=18%  Similarity=0.131  Sum_probs=88.9

Q ss_pred             CCcccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCC-cHHHHHH
Q 041247            2 DNILSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGN-TALHVAA   80 (507)
Q Consensus         2 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~-t~Lh~Aa   80 (507)
                      |.+.++||+|+.+|+.+++++|+++|++++.+|..|.||||.| ..|+.+++++|++. +.+++.+ +..+. ||||+|+
T Consensus         1 ep~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a-~~g~~~~v~~Ll~~-ga~~~~~-~~~~~~~~L~~A~   77 (125)
T d1bi7b_           1 EPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVM-MMGSARVAELLLLH-GAEPNCA-DPATLTRPVHDAA   77 (125)
T ss_dssp             CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSS-CTTCHHHHHHHHTT-TCCCCCC-CTTTCCCHHHHHH
T ss_pred             CCChhHHHHHHHCCCHHHHHHHHHcCCcccccccccccccccc-cccccccccccccc-ccccccc-ccccccccccccc
Confidence            3566777777777777777777777777777777777777755 35777777766654 5666666 55443 5777777


Q ss_pred             HcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHh
Q 041247           81 QANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMK  128 (507)
Q Consensus        81 ~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~  128 (507)
                      +.|+.+++++|+++  |++++.+|..|+||||+|++.|+.+++++|++
T Consensus        78 ~~g~~~~v~~Ll~~--ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          78 REGFLDTLVVLHRA--GARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHTCHHHHHHHHHH--TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccc--ccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            77777777777777  67777777777777777777777777777764

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=8.5e-24  Score=172.54  Aligned_cols=120  Identities=16%  Similarity=0.162  Sum_probs=84.3

Q ss_pred             CCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCC-cHHHHHH
Q 041247           37 RRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGC-TAFFYAA  115 (507)
Q Consensus        37 g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~-t~Lh~A~  115 (507)
                      +.++||+|+.+|+.+++++|++. +.+++.+ |..|.||||+|+ .|+.+++++|+++  +++++.+|..|. ||||+|+
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~-gad~n~~-~~~g~t~l~~a~-~g~~~~v~~Ll~~--ga~~~~~~~~~~~~~L~~A~   77 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEA-GANPNAP-NSYGRRPIQVMM-MGSARVAELLLLH--GAEPNCADPATLTRPVHDAA   77 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTT-TCCTTCC-CSSSCCTTTSSC-TTCHHHHHHHHTT--TCCCCCCCTTTCCCHHHHHH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHc-CCccccc-cccccccccccc-ccccccccccccc--cccccccccccccccccccc
Confidence            34567777777777777766653 5667666 777777777553 5777777777776  667777766654 4777777


Q ss_pred             HcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHh
Q 041247          116 ASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHK  162 (507)
Q Consensus       116 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  162 (507)
                      +.|+.+++++|+++|+++ +.+|.+|+||||+|+++|+.+++++|+.
T Consensus        78 ~~g~~~~v~~Ll~~ga~~-~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          78 REGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHTCHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccccccc-ccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            777777777777777775 6677777777777777777777777654

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.89  E-value=1.3e-24  Score=175.39  Aligned_cols=105  Identities=22%  Similarity=0.149  Sum_probs=58.5

Q ss_pred             cHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCH
Q 041247            6 SGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCI   85 (507)
Q Consensus         6 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~   85 (507)
                      |||.+|+++|+.++|++|+++|++++..|..|+||||+|+..|+.++++++++. +.+++.+ |..|+||||+|+..|+.
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~-g~din~~-d~~g~tpLh~A~~~~~~   81 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK-GADINAP-DKHHITPLLSAVYEGHV   81 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHS-SCTTTCC-SSSCSCHHHHHHTTTCC
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccc-cceeeec-ccccccchhhhhhcCch
Confidence            555555555555555555555555555555555555555555555555544432 4455554 55555555555555555


Q ss_pred             HHHHHHHHcCCchhhcccccCCCcHHHHH
Q 041247           86 DFVKELLKMMSTEDLAKKNKIGCTAFFYA  114 (507)
Q Consensus        86 e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A  114 (507)
                      +++++|+++  |++++.+|.+|+||||+|
T Consensus        82 ~~v~~Ll~~--Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          82 SCVKLLLSK--GADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             HHHHHHHTT--CCCSSSSSSSTCCCCCTC
T ss_pred             hhhhhhhcc--cccceeeCCCCCCHHHHH
Confidence            555555555  455555555555555554

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=1.1e-23  Score=199.72  Aligned_cols=186  Identities=10%  Similarity=-0.031  Sum_probs=129.2

Q ss_pred             CCCCCCCc-cccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCH---HHHHHHHHcCCchhhc
Q 041247           26 NGGANLSE-DSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCI---DFVKELLKMMSTEDLA  101 (507)
Q Consensus        26 ~g~~~~~~-~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~---e~v~~Ll~~~~~~~~~  101 (507)
                      .+.+++.. |..|+||||+||..|+.++++.|++. +++++.+ |..|+||||.|+..++.   +.++.+++.. ...+.
T Consensus        95 ~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~-gad~~~~-d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l-~~~~~  171 (301)
T d1sw6a_          95 TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKH-GSNRLYG-DNMGESCLVKAVKSVNNYDSGTFEALLDYL-YPCLI  171 (301)
T ss_dssp             SCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTBC-CTTCCCHHHHHHHSSHHHHTTCHHHHHHHH-GGGGG
T ss_pred             cCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCcC-CcccccHHHHhhhcccchhhhhHHHHHHHH-hhhhh
Confidence            34455544 88999999999999999999988864 8999998 99999999999987752   2233444432 34577


Q ss_pred             ccccCCCcHHHHHHHcCc----H--------HHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhc---cc-
Q 041247          102 KKNKIGCTAFFYAAASGM----V--------EIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQ---TK-  165 (507)
Q Consensus       102 ~~d~~g~t~Lh~A~~~g~----~--------~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~---~~-  165 (507)
                      .+|..|+||||+++..+.    .        .+++++.+.+..........+.++++.+........++.+...   .. 
T Consensus       172 ~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (301)
T d1sw6a_         172 LEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANM  251 (301)
T ss_dssp             EECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHT
T ss_pred             hcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcC
Confidence            889999999999886443    2        2445566665554455566667777776665544444332211   11 


Q ss_pred             cccCCCChhhHHHHHHHcCChHHHHHHHhcCchhhhhcccCCchHHHHHH
Q 041247          166 NSLTDDDCIELLVQLIETGFYVVALQLLRDRPRLATKRAENEETALHVLA  215 (507)
Q Consensus       166 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~  215 (507)
                      .+.+|.+|+||||+|++.|+.+++++|++. +.+++.+|..|+|||++|+
T Consensus       252 in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~-GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         252 LNAQDSNGDTCLNIAARLGNISIVDALLDY-GADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             TTCCCTTSCCHHHHHHHHCCHHHHHHHHHT-TCCTTCCCTTSCCGGGGTC
T ss_pred             ccCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHcC
Confidence            577899999999999999999999999998 7888999999999999986

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=5.7e-24  Score=171.61  Aligned_cols=107  Identities=23%  Similarity=0.273  Sum_probs=89.3

Q ss_pred             CHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHc
Q 041247           38 RLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAAS  117 (507)
Q Consensus        38 ~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~  117 (507)
                      .|||++|++.|+.+++++|+++ +.+++.+ |..|+||||+|+..|+.+++++|+++  +++++.+|..|+||||+|+..
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~-g~d~n~~-~~~g~t~lh~A~~~~~~~~~~~ll~~--g~din~~d~~g~tpLh~A~~~   78 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAK-GEDVNRT-LEGGRKPLHYAADCGQLEILEFLLLK--GADINAPDKHHITPLLSAVYE   78 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTT-TCCCCCC-SSSSCCTTHHHHHHSTTTHHHHHHHS--SCTTTCCSSSCSCHHHHHHTT
T ss_pred             ChHHHHHHHCCCHHHHHHHHHh-hhccccc-cccccccccccccccccccccccccc--cceeeecccccccchhhhhhc
Confidence            4688888888888888877764 6778877 88888888888888888888888888  788888888888888888888


Q ss_pred             CcHHHHHHHHhcCCCCCccCCCCCChHHHHHH
Q 041247          118 GMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAA  149 (507)
Q Consensus       118 g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~  149 (507)
                      |+.+++++|+++|+++ +.+|.+|.||||+|.
T Consensus        79 ~~~~~v~~Ll~~Gad~-~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          79 GHVSCVKLLLSKGADK-TVKGPDGLTALEATD  109 (118)
T ss_dssp             TCCHHHHHHHTTCCCS-SSSSSSTCCCCCTCS
T ss_pred             Cchhhhhhhhcccccc-eeeCCCCCCHHHHHh
Confidence            8888888888888886 788888888888773

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.1e-22  Score=167.11  Aligned_cols=121  Identities=18%  Similarity=0.183  Sum_probs=67.8

Q ss_pred             HHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcC
Q 041247           39 LKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASG  118 (507)
Q Consensus        39 t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g  118 (507)
                      ++|+.|+..|+.++++.|+++ +.+++.+ |.+|+||||+|+..|+.+++++|++.  +++++.+|.+|+||||+|+..|
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~-g~d~n~~-d~~g~t~Lh~A~~~~~~~~~~~ll~~--g~~~~~~d~~g~tpLh~A~~~g   78 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYE-VDDPSLP-NDEGITALHNAVCAGHTEIVKFLVQF--GVNVNAADSDGWTPLHCAASCN   78 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTST-TSSCCCC-CTTSCCHHHHHHHHTCHHHHHHHHHH--TCCTTCCCTTCCCHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHc-CCCcccc-cccccccccccccccccccccccccc--ccccccccccCcccccccchhh
Confidence            345556666666666655543 4555555 55566666666666666666666665  5556666666666666666666


Q ss_pred             cHHHHHHHHhcCCCCCccCCCCCChHHHHH--HHcCcHHHHHHHHhc
Q 041247          119 MVEIVEEMMKGNKDIAMVPDMDGTLPIVRA--AALEQGQMVLLLHKQ  163 (507)
Q Consensus       119 ~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A--~~~g~~~~v~~Ll~~  163 (507)
                      +.+++++|+++|+++....+..+.||++++  +.+|+.+++++|++.
T Consensus        79 ~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          79 NVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             CHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            666666666666554222223355554443  344555666665543

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=7.6e-23  Score=167.98  Aligned_cols=122  Identities=16%  Similarity=0.028  Sum_probs=111.2

Q ss_pred             ccHHHHHHHcCCChhhHHHHhCCCCCCCccccCCHHhHHHHHcCCHHHHHHHHhhchhccccccCCCCCcHHHHHHHcCC
Q 041247            5 LSGLGWVMTNGIKEAPRVLLSNGGANLSEDSLRRLKLYRAALNGDWAVAKDIYDKYKVEIGQEITNLGNTALHVAAQANC   84 (507)
Q Consensus         5 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh~Aa~~g~   84 (507)
                      .++|+.||..|+.++|++|+++|++++.+|.+|+||||+|+..|+.++++++++. +.+++.+ |.+|+||||+|+.+|+
T Consensus         2 l~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~-g~~~~~~-d~~g~tpLh~A~~~g~   79 (130)
T d1ycsb1           2 LALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQF-GVNVNAA-DSDGWTPLHCAASCNN   79 (130)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHH-TCCTTCC-CTTCCCHHHHHHHTTC
T ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCcccccccccccccccccccccccccccccc-ccccccc-cccCcccccccchhhH
Confidence            3789999999999999999999999999999999999999999999999988875 7888888 9999999999999999


Q ss_pred             HHHHHHHHHcCCchhhccccc-CCCcHHHHH--HHcCcHHHHHHHHhcC
Q 041247           85 IDFVKELLKMMSTEDLAKKNK-IGCTAFFYA--AASGMVEIVEEMMKGN  130 (507)
Q Consensus        85 ~e~v~~Ll~~~~~~~~~~~d~-~g~t~Lh~A--~~~g~~~iv~~Ll~~~  130 (507)
                      .+++++|+++  |++++..+. .|+||++++  +..|+.+++++|++..
T Consensus        80 ~~~v~~Ll~~--ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          80 VQVCKFLVES--GAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             HHHHHHHHHT--TCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHc--CCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence            9999999999  899987764 588887765  5778999999998754

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=4.2e-21  Score=161.65  Aligned_cols=122  Identities=22%  Similarity=0.320  Sum_probs=95.8

Q ss_pred             HhHHHHHcCCHHHHHHHHhhchhccccc-----cCCCCCcHHHHHHHc---CCHHHHHHHHHcCCchhhcccccCCCcHH
Q 041247           40 KLYRAALNGDWAVAKDIYDKYKVEIGQE-----ITNLGNTALHVAAQA---NCIDFVKELLKMMSTEDLAKKNKIGCTAF  111 (507)
Q Consensus        40 ~Lh~Aa~~g~~~~v~~ll~~~~~~i~~~-----~~~~g~t~Lh~Aa~~---g~~e~v~~Ll~~~~~~~~~~~d~~g~t~L  111 (507)
                      .|+.|++.++...+..++.+ +.+++.+     .+..|+||||+|++.   |+.+++++|+++  |++++.+|..|+|||
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~-g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~--gadin~~d~~g~TpL   85 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYAD-GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN--SGNLDKQTGKGSTAL   85 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHT-TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH--CSCTTCCCTTCCCHH
T ss_pred             HHHHHHHhCCHHHHHHHHHc-CCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHc--CCChhhhhhhhcccc
Confidence            45566777777777666654 3333221     256688899988874   567888888888  788888888899999


Q ss_pred             HHHHHcCcHHHHHHHHhcCCCCCccCCCCCChHHHHHHHcCcHHHHHHHHhccc
Q 041247          112 FYAAASGMVEIVEEMMKGNKDIAMVPDMDGTLPIVRAAALEQGQMVLLLHKQTK  165 (507)
Q Consensus       112 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~  165 (507)
                      |+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+++|+.+++++|++.+.
T Consensus        86 h~A~~~~~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~  138 (154)
T d1dcqa1          86 HYCCLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQALS  138 (154)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             ccccccccccccccccccCccc-cccCCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence            9999999999999999888887 7888888999999998888889888888765

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=9.5e-21  Score=159.46  Aligned_cols=123  Identities=15%  Similarity=0.058  Sum_probs=110.2

Q ss_pred             HHHHHHHcCCChhhHHHHhCCCCCCCc------cccCCHHhHHHHHc---CCHHHHHHHHhhchhccccccCCCCCcHHH
Q 041247            7 GLGWVMTNGIKEAPRVLLSNGGANLSE------DSLRRLKLYRAALN---GDWAVAKDIYDKYKVEIGQEITNLGNTALH   77 (507)
Q Consensus         7 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~------~~~g~t~Lh~Aa~~---g~~~~v~~ll~~~~~~i~~~~~~~g~t~Lh   77 (507)
                      .|+.|++.++.+.+..++..|.+....      +..|+||||+|+..   |+.+++++|++. +.+++.+ |..|+||||
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~-gadin~~-d~~g~TpLh   86 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN-SGNLDKQ-TGKGSTALH   86 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH-CSCTTCC-CTTCCCHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHc-CCChhhh-hhhhccccc
Confidence            456788999999999999998776543      67899999999974   678999988865 7899998 999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCchhhcccccCCCcHHHHHHHcCcHHHHHHHHhcCCCC
Q 041247           78 VAAQANCIDFVKELLKMMSTEDLAKKNKIGCTAFFYAAASGMVEIVEEMMKGNKDI  133 (507)
Q Consensus        78 ~Aa~~g~~e~v~~Ll~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~  133 (507)
                      +|+..|+.+++++|+++  |++++.+|..|+||||+|++.|+.+++++|++.+...
T Consensus        87 ~A~~~~~~~~v~~Ll~~--gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~  140 (154)
T d1dcqa1          87 YCCLTDNAECLKLLLRG--KASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  140 (154)
T ss_dssp             HHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             ccccccccccccccccc--CccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCC
Confidence            99999999999999999  8999999999999999999999999999999977653