Citrus Sinensis ID: 041273
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 362 | 2.2.26 [Sep-21-2011] | |||||||
| Q94BZ1 | 478 | Protein ZINC INDUCED FACI | no | no | 0.972 | 0.736 | 0.586 | 1e-125 | |
| Q8RWN2 | 486 | Protein ZINC INDUCED FACI | no | no | 0.986 | 0.734 | 0.551 | 1e-113 | |
| Q3EAQ5 | 484 | Probable peptide/nitrate | no | no | 0.961 | 0.719 | 0.490 | 1e-104 | |
| P25351 | 611 | Uncharacterized membrane | yes | no | 0.395 | 0.234 | 0.293 | 1e-10 | |
| D8MQN9 | 411 | Multidrug resistance prot | yes | no | 0.395 | 0.347 | 0.302 | 3e-09 | |
| A8GCZ5 | 411 | Multidrug resistance prot | yes | no | 0.276 | 0.243 | 0.34 | 5e-07 | |
| B4EYY4 | 402 | Multidrug resistance prot | no | no | 0.276 | 0.248 | 0.32 | 2e-06 | |
| Q5HHX4 | 388 | Quinolone resistance prot | yes | no | 0.284 | 0.265 | 0.269 | 1e-05 | |
| P02980 | 401 | Tetracycline resistance p | yes | no | 0.361 | 0.326 | 0.267 | 1e-05 | |
| P0A0J6 | 388 | Quinolone resistance prot | yes | no | 0.284 | 0.265 | 0.269 | 2e-05 |
| >sp|Q94BZ1|ZIFL1_ARATH Protein ZINC INDUCED FACILITATOR-LIKE 1 OS=Arabidopsis thaliana GN=ZIFL1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 447 bits (1151), Expect = e-125, Method: Compositional matrix adjust.
Identities = 230/392 (58%), Positives = 280/392 (71%), Gaps = 40/392 (10%)
Query: 1 ALTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI 60
A TSV WG+VADR GRKPVI+IG +VV+FNTLFGLS++FWMAI TRF LG+ NGLLGPI
Sbjct: 91 AFTSVAWGLVADRYGRKPVILIGTASVVVFNTLFGLSLNFWMAIITRFCLGSFNGLLGPI 150
Query: 61 KAYACEILRDQHKTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPY 120
KAYA EI RD+++ L LS +STAWG GLIIGPA+GGFLAQPA++YP FS++S+FGKFP+
Sbjct: 151 KAYAMEIFRDEYQGLALSAVSTAWGIGLIIGPAIGGFLAQPAKQYPSLFSQDSIFGKFPF 210
Query: 121 FLPCLCMSLFAFAVTIASCWIPETLHKHNEDGVSLDVSCDALESACGSNAEFKQDEGSEE 180
FLPCL +S+FAF VTI S IPETLH H + D S DAL+ ++ + E
Sbjct: 211 FLPCLAISVFAFLVTIVSSRIPETLHNHKFND---DESYDALKDL----SDDPESNKVAE 263
Query: 181 ATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLAI 240
K SL+ NWP ISS IVYCVFSLHD+AYTEIFSLWA SP KYGGL YST + G VLA
Sbjct: 264 RNGKSSLLNNWPLISSIIVYCVFSLHDMAYTEIFSLWANSPRKYGGLGYSTADVGSVLAF 323
Query: 241 SGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASV 300
SGF LL+FQL+LY Y ER++GPII+TRI+G L++ +L+ Y IA LSG +L + + ASV
Sbjct: 324 SGFGLLIFQLSLYSYAERLLGPIIVTRISGSLAMVVLSCYPLIAKLSGLALTVTVTSASV 383
Query: 301 MKNVLSVSIMTGLFLLQNRAV---------------------------------SQKRQG 327
K+VL S +TGLF+LQN+AV S+KRQG
Sbjct: 384 AKSVLGTSAITGLFILQNKAVRQDQRGAANGIAMTAMSLFKAIGPAAAGIIFSWSEKRQG 443
Query: 328 AGFLPGNQMIFFILNLVEALGVILTFKPFLIQ 359
A FLPG QM+FFILN+V ALGV+LTFKPFL +
Sbjct: 444 AAFLPGTQMVFFILNVVLALGVVLTFKPFLAE 475
|
Major facilitator superfamily (MFS) transporter probably involved in 2,4-dichlorophenoxyacetic acid (2,4-D) export. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8RWN2|ZIF1_ARATH Protein ZINC INDUCED FACILITATOR 1 OS=Arabidopsis thaliana GN=ZIF1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 408 bits (1049), Expect = e-113, Method: Compositional matrix adjust.
Identities = 215/390 (55%), Positives = 271/390 (69%), Gaps = 33/390 (8%)
Query: 1 ALTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI 60
ALTSV WG+VADR GRKP+I++G I++ IFN LFGLS +FWMAI TRFLLG+ N LLG +
Sbjct: 92 ALTSVFWGIVADRYGRKPIILLGTISIAIFNALFGLSSNFWMAIGTRFLLGSFNCLLGTM 151
Query: 61 KAYACEILRDQHKTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPY 120
KAYA EI RD+++ +S +STAWG GLIIGPA+GGFLAQPA+KYP FS+ES+FG+F Y
Sbjct: 152 KAYASEIFRDEYQATAMSAVSTAWGIGLIIGPALGGFLAQPADKYPNVFSQESLFGRFRY 211
Query: 121 FLPCLCMSLFAFAVTIASCWIPETLHKHNEDGVSLDVSCDALESACGSNAEFKQDEGSEE 180
LPC +S FA VT+ C+IPETLH H D +S D S D LE+A ++ G E
Sbjct: 212 ALPCFTISAFALLVTVLCCFIPETLHNHKLDSLSHDDSYDILEAASHESSPSTGKAGKNE 271
Query: 181 ATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLAI 240
A +SL+KNWP +SS IVYCV LHD AY+EIF+LWA SP KYGGLSYST G VLAI
Sbjct: 272 RKASQSLLKNWPLMSSIIVYCVLCLHDTAYSEIFALWANSPRKYGGLSYSTNEVGTVLAI 331
Query: 241 SGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASV 300
SG L FQ+ +YP E+++GP+++TR AG L IP+ SY +IA LSG SL+L++NCAS+
Sbjct: 332 SGLGLFSFQVFVYPLAEKLLGPVLVTRYAGALMIPIQMSYPFIAGLSGLSLSLMLNCASI 391
Query: 301 MKNVLSVSIMTGLFLLQNRAVSQKRQG--------------------------------- 327
+ NVLSVS +TGL +LQNRAV Q ++G
Sbjct: 392 LINVLSVSAITGLLILQNRAVDQSQRGAANGIAMTAMSLFKTVGPAGAGILFSWSERRLN 451
Query: 328 AGFLPGNQMIFFILNLVEALGVILTFKPFL 357
A FLPG+ M+FF+LN++ +GV LTFKPFL
Sbjct: 452 AAFLPGSHMVFFVLNVIVVVGVALTFKPFL 481
|
Major facilitator superfamily (MFS) transporter involved in zinc tolerance by participating in vacuolar sequestration of zinc. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3EAQ5|PTR36_ARATH Probable peptide/nitrate transporter At3g43790 OS=Arabidopsis thaliana GN=ZIFL2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 378 bits (970), Expect = e-104, Method: Compositional matrix adjust.
Identities = 198/404 (49%), Positives = 268/404 (66%), Gaps = 56/404 (13%)
Query: 1 ALTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI 60
ALTS+ WG +ADR GRKP+I+IG +V+IFNTLFGLS SFW+AI+ RFLLG N LLG I
Sbjct: 90 ALTSIFWGKLADRYGRKPIILIGTFSVIIFNTLFGLSTSFWLAISVRFLLGCFNCLLGVI 149
Query: 61 KAYACEILRDQHKTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPY 120
+AYA E++ +++ L LS +ST+ G GLI+GPA+GG+LAQPAEKYP FS+ S+FG+FPY
Sbjct: 150 RAYASEVVSEEYNALSLSVVSTSRGIGLILGPAIGGYLAQPAEKYPNIFSQSSVFGRFPY 209
Query: 121 FLPCLCMSLFAFAVTIASCWIPETLHKHNEDGVSLDVSCDALESACGSNAEFKQDEG--- 177
FLP L +S++A AV IA W+PETLH C + E DE
Sbjct: 210 FLPSLVISVYATAVLIACWWLPETLHTR----------CRIAQGRLNPT-ELNDDESRGG 258
Query: 178 ---SEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENA 234
++ K SL++N P ++ IVYCVFSL +IAY EIFSLWA+S YGGLS+S+++
Sbjct: 259 GLDEQKIINKPSLLRNRPLMAIIIVYCVFSLQEIAYNEIFSLWAVSDRSYGGLSFSSQDV 318
Query: 235 GQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALL 294
G+VLAISG LLVFQL +YP +E+ +G + + R++ VL IPLL+ Y YIA+LSG +L L+
Sbjct: 319 GEVLAISGLGLLVFQLLVYPPLEKSVGLLAVIRLSAVLLIPLLSCYPYIALLSGVTLHLV 378
Query: 295 INCASVMKNVLSVSIMTGLFLLQNRAV--------------------------------- 321
INCAS++KN LS+S++TGLF++ N+AV
Sbjct: 379 INCASIIKNALSISLVTGLFIMLNKAVPQNQRGAANGISMTAMSVFKSFGPAGGGVLFSW 438
Query: 322 SQKRQGAGFLPG------NQMIFFILNLVEALGVILTFKPFLIQ 359
+QKRQ A FLPG ++M+F +LNLV+ +G+ILTF P++ Q
Sbjct: 439 AQKRQDATFLPGQIFAPCDEMVFLVLNLVQLVGLILTFIPYISQ 482
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P25351|YCR3_YEAST Uncharacterized membrane protein YCR023C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YCR023C PE=1 SV=2 | Back alignment and function description |
|---|
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 78/150 (52%), Gaps = 7/150 (4%)
Query: 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPIK 61
+++ WG +++ GRK + G I + + G S +F+ A+ R L+G LNG +G I+
Sbjct: 74 ISAYHWGRFSEKHGRKITLTCGLIGTSVSLLILGFSRNFYQALVARSLMGLLNGNVGVIR 133
Query: 62 AYACEILRDQ-HKTLGLSTLSTAWGTGLIIGPAVGGFLA---QPAEKYPKAFSK--ESMF 115
EI ++ H+ L ST+ + G ++GP +GGFL + P F + +
Sbjct: 134 TIIGEIATERKHQALAFSTMPLLFQFGAVVGPMIGGFLVFRDGTMNEVPLWFPHFAKRII 193
Query: 116 GKFPYFLPCLCMSLF-AFAVTIASCWIPET 144
+PY LP + + +F F +T A+ ++ ET
Sbjct: 194 RSYPYALPNVVVCMFLMFGLTNATLFLEET 223
|
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|D8MQN9|MDTG_ERWBE Multidrug resistance protein MdtG OS=Erwinia billingiae (strain Eb661) GN=mdtG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 64/149 (42%), Gaps = 6/149 (4%)
Query: 1 ALTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI 60
A+ S WG +ADR GRK +++ + + + L GL+ S W +A R +LG L G +
Sbjct: 69 AIASPFWGGLADRKGRKIMLLRSALGMSVVMVLMGLATSIWQFLALRAVLGLLGGFVPNA 128
Query: 61 KAYACEILRDQHKTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPY 120
A + L LST +G +IGP +GG LA P F S+
Sbjct: 129 NALIATQVPRNKSGWALGWLSTGAVSGALIGPLIGGLLADSFGLRPVFFITASV------ 182
Query: 121 FLPCLCMSLFAFAVTIASCWIPETLHKHN 149
C M+LFA + LH H
Sbjct: 183 LFVCFIMTLFAVREEFVPVQKKDMLHAHQ 211
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Erwinia billingiae (strain Eb661) (taxid: 634500) |
| >sp|A8GCZ5|MDTG_SERP5 Multidrug resistance protein MdtG OS=Serratia proteamaculans (strain 568) GN=mdtG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 51/100 (51%)
Query: 1 ALTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI 60
A+ S WG +ADR GRK +++ + + I L G++ + W +A R +LG L G +
Sbjct: 66 AIASPFWGGLADRRGRKLMLLRSALGMSIVMLLMGMAQNIWQFLALRAVLGLLGGFIPNA 125
Query: 61 KAYACEILRDQHKTLGLSTLSTAWGTGLIIGPAVGGFLAQ 100
A + L TLST +G +IGP +GG LA
Sbjct: 126 NALIATQVPRNRSGWALGTLSTGGVSGALIGPLIGGLLAD 165
|
Serratia proteamaculans (strain 568) (taxid: 399741) |
| >sp|B4EYY4|MDTG_PROMH Multidrug resistance protein MdtG OS=Proteus mirabilis (strain HI4320) GN=mdtG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 50/100 (50%)
Query: 1 ALTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI 60
A+ + WG ++DR GRK +++ + + I L G + + W + R LLG L G +
Sbjct: 66 AIAAPFWGKLSDRKGRKLMLLRSALGMAIVMVLIGFAQNIWQLLILRALLGVLGGFVPNA 125
Query: 61 KAYACEILRDQHKTLGLSTLSTAWGTGLIIGPAVGGFLAQ 100
A + + L TLST +G +IGP +GG LA
Sbjct: 126 NALIATQVPVKKSGWALGTLSTGAVSGALIGPLIGGILAD 165
|
Proteus mirabilis (strain HI4320) (taxid: 529507) |
| >sp|Q5HHX4|NORA_STAAC Quinolone resistance protein NorA OS=Staphylococcus aureus (strain COL) GN=norA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
Query: 8 GMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGP-IKAYACE 66
G +AD+ G+K +I IG I + +F + +F + + +R + G G++ P + +
Sbjct: 59 GTLADKLGKKLIICIGLILFSVSEFMFAVGHNFSVLMLSRVIGGMSAGMVMPGVTGLIAD 118
Query: 67 ILRDQHKTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFS 110
I K +S +G I+GP +GGF+A+ + + P F+
Sbjct: 119 ISPSHQKAKNFGYMSAIINSGFILGPGIGGFMAEVSHRMPFYFA 162
|
Involved in quinolone resistance. May constitute a membrane-associated active efflux pump of hydrophilic quinolones. Staphylococcus aureus (strain COL) (taxid: 93062) |
| >sp|P02980|TCR2_ECOLX Tetracycline resistance protein, class B OS=Escherichia coli GN=tetA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 26/157 (16%)
Query: 8 GMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPIKAYACEI 67
G ++DR GR+PV+++ I + L S + WM R L+G+ G A A +
Sbjct: 62 GKMSDRFGRRPVLLLSLIGASLDYLLLAFSSALWMLYLGRL----LSGITGATGAVAASV 117
Query: 68 LRD----QHKTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLP 123
+ D + L ++G GLI GP +GGF E P + P+F+
Sbjct: 118 IADTTSASQRVKWFGWLGASFGLGLIAGPIIGGF---AGEISPHS----------PFFIA 164
Query: 124 CLCMSLFAFAVTIASCWIPETLHKHNEDGVSLDVSCD 160
L +++ F V + W ET K+ D +V +
Sbjct: 165 AL-LNIVTFLVVM--FWFRET--KNTRDNTDTEVGVE 196
|
Resistance to tetracycline by an active tetracycline efflux. This is an energy-dependent process that decreases the accumulation of the antibiotic in whole cells. This protein functions as a metal-tetracycline/H(+) antiporter. Escherichia coli (taxid: 562) |
| >sp|P0A0J6|NORA_STAAW Quinolone resistance protein NorA OS=Staphylococcus aureus (strain MW2) GN=norA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
Query: 8 GMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGP-IKAYACE 66
G +AD+ G+K +I IG I + +F + +F + + +R + G G++ P + +
Sbjct: 59 GTLADKLGKKLIICIGLILFSVSEFMFAVGHNFSVLMLSRVIGGMSAGMVMPGVTGLIAD 118
Query: 67 ILRDQHKTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFS 110
I K +S +G I+GP +GGF+A+ + + P F+
Sbjct: 119 ISPSHQKAKNFGYMSAIINSGFILGPGIGGFMAEVSHRMPFYFA 162
|
Involved in quinolone resistance. May constitute a membrane-associated active efflux pump of hydrophilic quinolones. Staphylococcus aureus (strain MW2) (taxid: 196620) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 362 | ||||||
| 359487104 | 1624 | PREDICTED: uncharacterized protein LOC10 | 0.997 | 0.222 | 0.630 | 1e-141 | |
| 296085436 | 518 | unnamed protein product [Vitis vinifera] | 0.997 | 0.696 | 0.630 | 1e-140 | |
| 225465403 | 487 | PREDICTED: protein ZINC INDUCED FACILITA | 0.994 | 0.739 | 0.637 | 1e-140 | |
| 225465405 | 487 | PREDICTED: protein ZINC INDUCED FACILITA | 0.994 | 0.739 | 0.658 | 1e-137 | |
| 224097490 | 495 | predicted protein [Populus trichocarpa] | 0.994 | 0.727 | 0.637 | 1e-135 | |
| 297807399 | 479 | hypothetical protein ARALYDRAFT_488196 [ | 0.975 | 0.736 | 0.599 | 1e-125 | |
| 30684567 | 392 | zinc induced facilitator-like 1 protein | 0.972 | 0.897 | 0.586 | 1e-124 | |
| 21555230 | 392 | transporter-like protein [Arabidopsis th | 0.972 | 0.897 | 0.586 | 1e-124 | |
| 30684565 | 478 | zinc induced facilitator-like 1 protein | 0.972 | 0.736 | 0.586 | 1e-123 | |
| 359481459 | 490 | PREDICTED: protein ZINC INDUCED FACILITA | 0.983 | 0.726 | 0.567 | 1e-118 |
| >gi|359487104|ref|XP_002274088.2| PREDICTED: uncharacterized protein LOC100259102 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust.
Identities = 249/395 (63%), Positives = 307/395 (77%), Gaps = 34/395 (8%)
Query: 1 ALTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI 60
ALTS+LWGMVADR GRKPVI++G +VVIFNTLFGLS+++WMAI++RFLLG+++ LLGPI
Sbjct: 1229 ALTSILWGMVADRYGRKPVILVGTASVVIFNTLFGLSLNYWMAISSRFLLGSMSTLLGPI 1288
Query: 61 KAYACEILRDQHKTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPY 120
AYA EI R++++ LGLST++TAWG GLIIGPA+GGFLAQPAEKYP FSKES+FG+FPY
Sbjct: 1289 MAYATEIFREEYQALGLSTINTAWGVGLIIGPALGGFLAQPAEKYPNIFSKESIFGRFPY 1348
Query: 121 FLPCLCMSLFAFAVTIASCWIPETLHKHNEDGVSLDVSCDALESACGSNAEFKQDE-GSE 179
FLPCLC S++AF +TIA CW+ ETLH HNE+ S +ALE+ CG NAE +E +
Sbjct: 1349 FLPCLCTSVYAFGITIACCWLQETLHTHNENNKLSKNSYNALEAPCGFNAEEAVNEIEAN 1408
Query: 180 EATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLA 239
+ T+K+SL+KNWP +SS IV+CVFSLHD+AY+EIFSLWA+SP KYGGLSYST++ G VLA
Sbjct: 1409 KPTSKESLIKNWPLMSSIIVFCVFSLHDMAYSEIFSLWAVSPRKYGGLSYSTDDVGVVLA 1468
Query: 240 ISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCAS 299
ISGF +LVFQL LYPY+E+++GPIII RIAGVLSIPLL Y IAMLSGF+L+L +NCAS
Sbjct: 1469 ISGFGVLVFQLFLYPYLEKLLGPIIICRIAGVLSIPLLAIYPLIAMLSGFNLSLALNCAS 1528
Query: 300 VMKNVLSVSIMTGLFLLQNRAVSQK---------------------------------RQ 326
MKNVLSVSI T L +LQNRAV Q RQ
Sbjct: 1529 AMKNVLSVSIGTSLIILQNRAVEQHQRGAANGITMTTMSLFKAAGPAGGGVIFSWAQGRQ 1588
Query: 327 GAGFLPGNQMIFFILNLVEALGVILTFKPFLIQRA 361
A F PG+QMIFFILN+VEA+ V++TFKPFL++R+
Sbjct: 1589 RAAFFPGDQMIFFILNVVEAIAVLMTFKPFLVRRS 1623
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296085436|emb|CBI29168.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust.
Identities = 249/395 (63%), Positives = 307/395 (77%), Gaps = 34/395 (8%)
Query: 1 ALTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI 60
ALTS+LWGMVADR GRKPVI++G +VVIFNTLFGLS+++WMAI++RFLLG+++ LLGPI
Sbjct: 123 ALTSILWGMVADRYGRKPVILVGTASVVIFNTLFGLSLNYWMAISSRFLLGSMSTLLGPI 182
Query: 61 KAYACEILRDQHKTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPY 120
AYA EI R++++ LGLST++TAWG GLIIGPA+GGFLAQPAEKYP FSKES+FG+FPY
Sbjct: 183 MAYATEIFREEYQALGLSTINTAWGVGLIIGPALGGFLAQPAEKYPNIFSKESIFGRFPY 242
Query: 121 FLPCLCMSLFAFAVTIASCWIPETLHKHNEDGVSLDVSCDALESACGSNAEFKQDE-GSE 179
FLPCLC S++AF +TIA CW+ ETLH HNE+ S +ALE+ CG NAE +E +
Sbjct: 243 FLPCLCTSVYAFGITIACCWLQETLHTHNENNKLSKNSYNALEAPCGFNAEEAVNEIEAN 302
Query: 180 EATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLA 239
+ T+K+SL+KNWP +SS IV+CVFSLHD+AY+EIFSLWA+SP KYGGLSYST++ G VLA
Sbjct: 303 KPTSKESLIKNWPLMSSIIVFCVFSLHDMAYSEIFSLWAVSPRKYGGLSYSTDDVGVVLA 362
Query: 240 ISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCAS 299
ISGF +LVFQL LYPY+E+++GPIII RIAGVLSIPLL Y IAMLSGF+L+L +NCAS
Sbjct: 363 ISGFGVLVFQLFLYPYLEKLLGPIIICRIAGVLSIPLLAIYPLIAMLSGFNLSLALNCAS 422
Query: 300 VMKNVLSVSIMTGLFLLQNRAVSQK---------------------------------RQ 326
MKNVLSVSI T L +LQNRAV Q RQ
Sbjct: 423 AMKNVLSVSIGTSLIILQNRAVEQHQRGAANGITMTTMSLFKAAGPAGGGVIFSWAQGRQ 482
Query: 327 GAGFLPGNQMIFFILNLVEALGVILTFKPFLIQRA 361
A F PG+QMIFFILN+VEA+ V++TFKPFL++R+
Sbjct: 483 RAAFFPGDQMIFFILNVVEAIAVLMTFKPFLVRRS 517
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225465403|ref|XP_002277598.1| PREDICTED: protein ZINC INDUCED FACILITATOR-LIKE 1 [Vitis vinifera] gi|296085440|emb|CBI29172.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust.
Identities = 252/395 (63%), Positives = 307/395 (77%), Gaps = 35/395 (8%)
Query: 1 ALTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI 60
ALTSV WGMVADR GRKPVI+IG ITVVIFNTLFGLSV+FWMA++TRFLLG+LNG+LGPI
Sbjct: 91 ALTSVAWGMVADRYGRKPVIMIGTITVVIFNTLFGLSVNFWMALSTRFLLGSLNGVLGPI 150
Query: 61 KAYACEILRDQHKTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPY 120
KAYA EI RD+++ LGLST+STA G GLIIGPA+GGFLAQPAEKYP FS++S+FG+FPY
Sbjct: 151 KAYAAEIFRDEYQALGLSTVSTARGIGLIIGPALGGFLAQPAEKYPDIFSEDSLFGRFPY 210
Query: 121 FLPCLCMSLFAFAVTIASCWIPETLHKHNEDGVSLDVSCDALESAC-GSNAEFKQDE-GS 178
FLPCL +S++A +T+A CW+PETLH HNE+ S + S DALE A GSNA+ K+ E
Sbjct: 211 FLPCLFISVYAMIITVACCWLPETLHTHNENKKSREDSYDALEGANGGSNAKEKEQEIEG 270
Query: 179 EEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVL 238
E T+ +SL NWP +SS I+YCVFSLHDIAY EIFSLWA+SP +GGLSYST++ G VL
Sbjct: 271 SEPTSNESLFMNWPLMSSIIIYCVFSLHDIAYIEIFSLWAVSPRIHGGLSYSTDDVGVVL 330
Query: 239 AISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCA 298
AISGF L V Q+TLYP VER +GP++I RIAGVLSIPLL SY IAMLSG +L++++NCA
Sbjct: 331 AISGFGLFVSQVTLYPLVERFLGPVMICRIAGVLSIPLLASYPLIAMLSGSTLSVVLNCA 390
Query: 299 SVMKNVLSVSIMTGLFLLQNRAV---------------------------------SQKR 325
SV+KNVLSVSI+TG+FLLQN AV +QKR
Sbjct: 391 SVLKNVLSVSIITGMFLLQNSAVDQHQRGTANGISMTAMSLFKAAGPAGGGALFSWAQKR 450
Query: 326 QGAGFLPGNQMIFFILNLVEALGVILTFKPFLIQR 360
Q + F PG+QM+F ILN+VEA+G+++TFKPFL+QR
Sbjct: 451 QDSAFFPGDQMVFLILNVVEAIGLLMTFKPFLVQR 485
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225465405|ref|XP_002277751.1| PREDICTED: protein ZINC INDUCED FACILITATOR-LIKE 1 [Vitis vinifera] gi|296085442|emb|CBI29174.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust.
Identities = 260/395 (65%), Positives = 310/395 (78%), Gaps = 35/395 (8%)
Query: 1 ALTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI 60
ALTSV WGMVADR GRKPVI+IG I VVIFNTLFGLSV+FWMA++TRFLLG+LNGLLGPI
Sbjct: 91 ALTSVAWGMVADRYGRKPVIMIGTIAVVIFNTLFGLSVNFWMALSTRFLLGSLNGLLGPI 150
Query: 61 KAYACEILRDQHKTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPY 120
KAYA EI RD+++ LGLST+STAWG GLIIGPA+GGFLAQPAEKYP FS++S+FG+FPY
Sbjct: 151 KAYAAEIFRDEYQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPDIFSEDSLFGRFPY 210
Query: 121 FLPCLCMSLFAFAVTIASCWIPETLHKHNEDGVSLDVSCDALESAC-GSNAEFKQDE-GS 178
FLPCL +S++A VT+A CW+PETLH HNE+ S + S DALE+A GSNA+ K+ E
Sbjct: 211 FLPCLFISVYAMIVTVACCWLPETLHTHNENKKSREDSYDALEAANGGSNAKEKEQEIEG 270
Query: 179 EEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVL 238
E T+ +SL NWP +SS IVYCVFSLHD+AYTEIFSLWA+SP +GGLSYST++ G VL
Sbjct: 271 SEPTSNESLFMNWPLMSSIIVYCVFSLHDMAYTEIFSLWAVSPRIHGGLSYSTDDVGVVL 330
Query: 239 AISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCA 298
AISGF LLV QLTLYP VER +GP++I RIAGVLSIPLL SY IAMLSG SL++++NCA
Sbjct: 331 AISGFGLLVSQLTLYPLVERFLGPVMICRIAGVLSIPLLASYPLIAMLSGSSLSVVLNCA 390
Query: 299 SVMKNVLSVSIMTGLFLLQNRAV---------------------------------SQKR 325
SV+KNVLSVSI+TGLFLLQN AV +QKR
Sbjct: 391 SVLKNVLSVSIITGLFLLQNSAVDQHQRGTANGISMTAMSLFKAAGPAGGGALFSWAQKR 450
Query: 326 QGAGFLPGNQMIFFILNLVEALGVILTFKPFLIQR 360
Q + F PG+QM+F ILN+VEA+GV++TFKPFL+QR
Sbjct: 451 QDSAFFPGDQMVFLILNVVEAIGVLMTFKPFLVQR 485
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224097490|ref|XP_002310957.1| predicted protein [Populus trichocarpa] gi|222850777|gb|EEE88324.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust.
Identities = 252/395 (63%), Positives = 304/395 (76%), Gaps = 35/395 (8%)
Query: 1 ALTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI 60
ALTSV WG+VADR GRKPVI++G I VVIFNTLFGLSV+FWMAI TRFLLG+LNGLLGPI
Sbjct: 92 ALTSVFWGIVADRYGRKPVILLGTIAVVIFNTLFGLSVNFWMAIITRFLLGSLNGLLGPI 151
Query: 61 KAYACEILRDQHKTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPY 120
KAYA EI R +++ LGLST+STAWG GLIIGPA+GGFLAQPAEKYP FSKES+FG+FPY
Sbjct: 152 KAYAVEIFRAEYQALGLSTVSTAWGLGLIIGPALGGFLAQPAEKYPNLFSKESLFGRFPY 211
Query: 121 FLPCLCMSLFAFAVTIASCWIPETLHKHNEDGVSLDVSCDALESACGSNA--EFKQDEGS 178
FLPC C+SLFA VTI SCW+PETLH HNE S + S DALE+A G++ E + D+
Sbjct: 212 FLPCFCISLFALVVTIVSCWLPETLHVHNEKKTSSNDSYDALEAATGASKGDETRTDDKG 271
Query: 179 EEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVL 238
+ ++ +SL+KNWP +SS IVYC+FSLHD+AYTEIFSLWA S K GGL Y+TE+ G+VL
Sbjct: 272 RKPSSNESLLKNWPLMSSIIVYCIFSLHDMAYTEIFSLWAESSRKLGGLGYTTEDVGEVL 331
Query: 239 AISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCA 298
AISGFSLLVFQL+LYP+VER++GPI + +IA LSI LL+SY +IAMLSG L++LINCA
Sbjct: 332 AISGFSLLVFQLSLYPFVERILGPIPVAQIAAALSILLLSSYPFIAMLSGLGLSILINCA 391
Query: 299 SVMKNVLSVSIMTGLFLLQNRAV---------------------------------SQKR 325
S+MKNV SVSI+TG+F+LQN AV +Q+R
Sbjct: 392 SIMKNVFSVSIVTGMFILQNNAVDQNQRGAANGISMTGMSLFKAVGPAGGGAILSWAQRR 451
Query: 326 QGAGFLPGNQMIFFILNLVEALGVILTFKPFLIQR 360
Q A FLPG QM+FFILN VE +G+++TFKPFL QR
Sbjct: 452 QNAAFLPGVQMVFFILNAVELIGLLMTFKPFLAQR 486
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297807399|ref|XP_002871583.1| hypothetical protein ARALYDRAFT_488196 [Arabidopsis lyrata subsp. lyrata] gi|297317420|gb|EFH47842.1| hypothetical protein ARALYDRAFT_488196 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 235/392 (59%), Positives = 281/392 (71%), Gaps = 39/392 (9%)
Query: 1 ALTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI 60
A TSV+WG+VADR GRKPVI+IG +VV+FNTLFGLS++FWMAI TRF LG+ NGLLGPI
Sbjct: 91 AFTSVIWGLVADRYGRKPVILIGTASVVVFNTLFGLSLNFWMAIITRFCLGSFNGLLGPI 150
Query: 61 KAYACEILRDQHKTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPY 120
KAYA EI RD+++ L LS +STAWG GLIIGPA+GGFLAQPA +YP FS++S+FGKFP+
Sbjct: 151 KAYAMEIFRDEYQGLALSAVSTAWGIGLIIGPAIGGFLAQPATQYPSLFSQDSIFGKFPF 210
Query: 121 FLPCLCMSLFAFAVTIASCWIPETLHKHNEDGVSLDVSCDALESACGSNAEFKQDEGSEE 180
FLPC +S+FAF VTI S WIPETLH H V D S DAL+ K E +E
Sbjct: 211 FLPCFAISVFAFLVTIISLWIPETLHNHKY--VDDDDSFDALKYLSHDPESNKVVERNE- 267
Query: 181 ATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLAI 240
K SL+ NWP ISS IVYCVFSLHD+AYTEIFSLWA SP KYGGL YST + G VLAI
Sbjct: 268 ---KSSLLNNWPLISSIIVYCVFSLHDMAYTEIFSLWANSPRKYGGLGYSTADVGSVLAI 324
Query: 241 SGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASV 300
SGF LL+FQL+LY Y ER++GPII+TRI+G+L++ +L+ Y IA LSG +L L +N ASV
Sbjct: 325 SGFGLLIFQLSLYSYAERLLGPIIVTRISGILAMVILSCYPLIAKLSGLALTLAVNSASV 384
Query: 301 MKNVLSVSIMTGLFLLQNRAV---------------------------------SQKRQG 327
KNVLS S +TGLF+LQN AV S+KRQ
Sbjct: 385 AKNVLSTSAITGLFILQNNAVRQDQRGAANGIAMTAMSLFKAIGPAAAGIIFSWSEKRQD 444
Query: 328 AGFLPGNQMIFFILNLVEALGVILTFKPFLIQ 359
A F PG QM+FFILN+V ALGV++TFKPFL +
Sbjct: 445 AAFFPGTQMVFFILNVVLALGVLMTFKPFLAE 476
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30684567|ref|NP_568290.3| zinc induced facilitator-like 1 protein [Arabidopsis thaliana] gi|332004553|gb|AED91936.1| zinc induced facilitator-like 1 protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 230/392 (58%), Positives = 280/392 (71%), Gaps = 40/392 (10%)
Query: 1 ALTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI 60
A TSV WG+VADR GRKPVI+IG +VV+FNTLFGLS++FWMAI TRF LG+ NGLLGPI
Sbjct: 5 AFTSVAWGLVADRYGRKPVILIGTASVVVFNTLFGLSLNFWMAIITRFCLGSFNGLLGPI 64
Query: 61 KAYACEILRDQHKTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPY 120
KAYA EI RD+++ L LS +STAWG GLIIGPA+GGFLAQPA++YP FS++S+FGKFP+
Sbjct: 65 KAYAMEIFRDEYQGLALSAVSTAWGIGLIIGPAIGGFLAQPAKQYPSLFSQDSIFGKFPF 124
Query: 121 FLPCLCMSLFAFAVTIASCWIPETLHKHNEDGVSLDVSCDALESACGSNAEFKQDEGSEE 180
FLPCL +S+FAF VTI S IPETLH H + D S DAL+ ++ + E
Sbjct: 125 FLPCLAISVFAFLVTIVSSRIPETLHNHKFND---DESYDALKDL----SDDPESNKVAE 177
Query: 181 ATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLAI 240
K SL+ NWP ISS IVYCVFSLHD+AYTEIFSLWA SP KYGGL YST + G VLA
Sbjct: 178 RNGKSSLLNNWPLISSIIVYCVFSLHDMAYTEIFSLWANSPRKYGGLGYSTADVGSVLAF 237
Query: 241 SGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASV 300
SGF LL+FQL+LY Y ER++GPII+TRI+G L++ +L+ Y IA LSG +L + + ASV
Sbjct: 238 SGFGLLIFQLSLYSYAERLLGPIIVTRISGSLAMVVLSCYPLIAKLSGLALTVTVTSASV 297
Query: 301 MKNVLSVSIMTGLFLLQNRAV---------------------------------SQKRQG 327
K+VL S +TGLF+LQN+AV S+KRQG
Sbjct: 298 AKSVLGTSAITGLFILQNKAVRQDQRGAANGIAMTAMSLFKAIGPAAAGIIFSWSEKRQG 357
Query: 328 AGFLPGNQMIFFILNLVEALGVILTFKPFLIQ 359
A FLPG QM+FFILN+V ALGV+LTFKPFL +
Sbjct: 358 AAFLPGTQMVFFILNVVLALGVVLTFKPFLAE 389
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|21555230|gb|AAM63809.1| transporter-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust.
Identities = 230/392 (58%), Positives = 279/392 (71%), Gaps = 40/392 (10%)
Query: 1 ALTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI 60
A TSV WG+VADR GRKPVI+IG +VV+FNTLFGLS++FWMAI TRF LG+ NGLLGPI
Sbjct: 5 AFTSVAWGLVADRYGRKPVILIGTASVVVFNTLFGLSLNFWMAIITRFCLGSFNGLLGPI 64
Query: 61 KAYACEILRDQHKTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPY 120
KAYA EI RD+++ L LS +STAWG GLIIGPA+GGFLAQPA++YP FS++S+FGKFP+
Sbjct: 65 KAYAMEIFRDEYQGLALSAVSTAWGIGLIIGPAIGGFLAQPAKQYPSLFSQDSIFGKFPF 124
Query: 121 FLPCLCMSLFAFAVTIASCWIPETLHKHNEDGVSLDVSCDALESACGSNAEFKQDEGSEE 180
FLPCL +S+FAF VTI S IPETLH H + D S DAL+ ++ + E
Sbjct: 125 FLPCLAISVFAFLVTIVSSRIPETLHNHKFND---DESYDALKDL----SDDPESNKVAE 177
Query: 181 ATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLAI 240
K SL+ NWP ISS IVYCVFSLHD+AYTEIFSLWA SP KYGGL YST + G VLA
Sbjct: 178 RNGKSSLLNNWPLISSIIVYCVFSLHDMAYTEIFSLWANSPRKYGGLGYSTADVGSVLAF 237
Query: 241 SGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASV 300
SGF LL+FQL+LY Y ER++GPII+TRI+G L++ +L+ Y IA LSG L + + ASV
Sbjct: 238 SGFGLLIFQLSLYSYAERLLGPIIVTRISGSLAMVVLSCYPLIAKLSGLVLTVTVTSASV 297
Query: 301 MKNVLSVSIMTGLFLLQNRAV---------------------------------SQKRQG 327
K+VL S +TGLF+LQN+AV S+KRQG
Sbjct: 298 AKSVLGTSAITGLFILQNKAVRQDXRGAANGIAMTAMSLFKAIGPAAAGIIFSWSEKRQG 357
Query: 328 AGFLPGNQMIFFILNLVEALGVILTFKPFLIQ 359
A FLPG QM+FFILN+V ALGV+LTFKPFL +
Sbjct: 358 AAFLPGTQMVFFILNVVLALGVVLTFKPFLAE 389
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30684565|ref|NP_851036.1| zinc induced facilitator-like 1 protein [Arabidopsis thaliana] gi|75249957|sp|Q94BZ1.1|ZIFL1_ARATH RecName: Full=Protein ZINC INDUCED FACILITATOR-LIKE 1; AltName: Full=Protein ZIF-LIKE 1 gi|14517414|gb|AAK62597.1| AT5g13750/MXE10_2 [Arabidopsis thaliana] gi|17065582|gb|AAL32945.1| transporter-like protein [Arabidopsis thaliana] gi|20857393|gb|AAM26717.1| AT5g13750/MXE10_2 [Arabidopsis thaliana] gi|332004552|gb|AED91935.1| zinc induced facilitator-like 1 protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 230/392 (58%), Positives = 280/392 (71%), Gaps = 40/392 (10%)
Query: 1 ALTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI 60
A TSV WG+VADR GRKPVI+IG +VV+FNTLFGLS++FWMAI TRF LG+ NGLLGPI
Sbjct: 91 AFTSVAWGLVADRYGRKPVILIGTASVVVFNTLFGLSLNFWMAIITRFCLGSFNGLLGPI 150
Query: 61 KAYACEILRDQHKTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPY 120
KAYA EI RD+++ L LS +STAWG GLIIGPA+GGFLAQPA++YP FS++S+FGKFP+
Sbjct: 151 KAYAMEIFRDEYQGLALSAVSTAWGIGLIIGPAIGGFLAQPAKQYPSLFSQDSIFGKFPF 210
Query: 121 FLPCLCMSLFAFAVTIASCWIPETLHKHNEDGVSLDVSCDALESACGSNAEFKQDEGSEE 180
FLPCL +S+FAF VTI S IPETLH H + D S DAL+ ++ + E
Sbjct: 211 FLPCLAISVFAFLVTIVSSRIPETLHNHKFND---DESYDALKDL----SDDPESNKVAE 263
Query: 181 ATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLAI 240
K SL+ NWP ISS IVYCVFSLHD+AYTEIFSLWA SP KYGGL YST + G VLA
Sbjct: 264 RNGKSSLLNNWPLISSIIVYCVFSLHDMAYTEIFSLWANSPRKYGGLGYSTADVGSVLAF 323
Query: 241 SGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASV 300
SGF LL+FQL+LY Y ER++GPII+TRI+G L++ +L+ Y IA LSG +L + + ASV
Sbjct: 324 SGFGLLIFQLSLYSYAERLLGPIIVTRISGSLAMVVLSCYPLIAKLSGLALTVTVTSASV 383
Query: 301 MKNVLSVSIMTGLFLLQNRAV---------------------------------SQKRQG 327
K+VL S +TGLF+LQN+AV S+KRQG
Sbjct: 384 AKSVLGTSAITGLFILQNKAVRQDQRGAANGIAMTAMSLFKAIGPAAAGIIFSWSEKRQG 443
Query: 328 AGFLPGNQMIFFILNLVEALGVILTFKPFLIQ 359
A FLPG QM+FFILN+V ALGV+LTFKPFL +
Sbjct: 444 AAFLPGTQMVFFILNVVLALGVVLTFKPFLAE 475
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359481459|ref|XP_003632620.1| PREDICTED: protein ZINC INDUCED FACILITATOR-LIKE 1-like [Vitis vinifera] gi|297741718|emb|CBI32850.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 222/391 (56%), Positives = 286/391 (73%), Gaps = 35/391 (8%)
Query: 1 ALTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI 60
ALTSV+WGMVADR GRKPVI G I ++IFNTLFGLS + WMA++TRFLLG+ G+LGP+
Sbjct: 93 ALTSVIWGMVADRYGRKPVITAGLIALIIFNTLFGLSTNVWMALSTRFLLGSFCGILGPM 152
Query: 61 KAYACEILRDQHKTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPY 120
+AYA E+ R +++ LG+S +STAWG GL+IGPA+GGFLAQPAEK+P FSKES+FG+FPY
Sbjct: 153 RAYASEVCRKEYQALGMSIISTAWGIGLVIGPALGGFLAQPAEKFPHIFSKESLFGRFPY 212
Query: 121 FLPCLCMSLFAFAVTIASCWIPETLHKHNEDGVSLDV-SCDALESACGSNAEFKQDEGSE 179
FLPCL +S FA V++ W+PETLH H E+ ++ + + C + K+ EG +
Sbjct: 213 FLPCLLISTFALGVSVLCYWLPETLHIHKENKEQDELYAWEVAAYGCDVKEKLKKFEG-K 271
Query: 180 EATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLA 239
++SL+KNWP +SS IVYCVF LHD+AY EIFSLWAISP +YGGLSYST + G+VLA
Sbjct: 272 GPNQQQSLLKNWPLMSSIIVYCVFQLHDMAYAEIFSLWAISPSEYGGLSYSTADVGEVLA 331
Query: 240 ISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCAS 299
+SG LL+FQL LYP +ER++GP++++RI VL++PLL+SY IAMLSG L+LLINCAS
Sbjct: 332 MSGLGLLLFQLFLYPPLERILGPVMVSRIGAVLTVPLLSSYPLIAMLSGVGLSLLINCAS 391
Query: 300 VMKNVLSVSIMTGLFLLQNRAVSQ---------------------------------KRQ 326
++KNVL VSI TGLFLLQNRAV+Q KRQ
Sbjct: 392 LLKNVLCVSITTGLFLLQNRAVTQQQRGAANGISMSAMSFFKAVGPAGGGSLFSWALKRQ 451
Query: 327 GAGFLPGNQMIFFILNLVEALGVILTFKPFL 357
FLPG++M+FFILN++E LG+ +TFKPFL
Sbjct: 452 NDSFLPGSRMVFFILNIIEVLGLFMTFKPFL 482
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 362 | ||||||
| TAIR|locus:2173254 | 486 | ZIF1 "zinc induced facilitator | 0.906 | 0.674 | 0.600 | 3.7e-116 | |
| TAIR|locus:2177105 | 478 | ZIFL1 "zinc induced facilitato | 0.930 | 0.705 | 0.597 | 6.5e-106 | |
| TAIR|locus:2101109 | 484 | ZIFL2 "AT3G43790" [Arabidopsis | 0.886 | 0.663 | 0.548 | 5e-92 | |
| ASPGD|ASPL0000053890 | 591 | AN0890 [Emericella nidulans (t | 0.483 | 0.296 | 0.351 | 7.8e-29 | |
| DICTYBASE|DDB_G0269964 | 665 | DDB_G0269964 "Uncharacterized | 0.370 | 0.201 | 0.384 | 1.2e-25 | |
| ASPGD|ASPL0000011265 | 530 | AN4019 [Emericella nidulans (t | 0.400 | 0.273 | 0.362 | 5.8e-24 | |
| ASPGD|ASPL0000051539 | 480 | AN1423 [Emericella nidulans (t | 0.350 | 0.264 | 0.363 | 1.1e-22 | |
| DICTYBASE|DDB_G0282945 | 669 | DDB_G0282945 [Dictyostelium di | 0.359 | 0.194 | 0.330 | 1.2e-20 | |
| CGD|CAL0004954 | 546 | orf19.3432 [Candida albicans ( | 0.290 | 0.192 | 0.361 | 1.2e-17 | |
| UNIPROTKB|Q2KEH9 | 581 | MGCH7_ch7g1057 "Putative uncha | 0.378 | 0.235 | 0.290 | 2.3e-17 |
| TAIR|locus:2173254 ZIF1 "zinc induced facilitator 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1044 (372.6 bits), Expect = 3.7e-116, Sum P(2) = 3.7e-116
Identities = 197/328 (60%), Positives = 247/328 (75%)
Query: 1 ALTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI 60
ALTSV WG+VADR GRKP+I++G I++ IFN LFGLS +FWMAI TRFLLG+ N LLG +
Sbjct: 92 ALTSVFWGIVADRYGRKPIILLGTISIAIFNALFGLSSNFWMAIGTRFLLGSFNCLLGTM 151
Query: 61 KAYACEILRDQHKTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPY 120
KAYA EI RD+++ +S +STAWG GLIIGPA+GGFLAQPA+KYP FS+ES+FG+F Y
Sbjct: 152 KAYASEIFRDEYQATAMSAVSTAWGIGLIIGPALGGFLAQPADKYPNVFSQESLFGRFRY 211
Query: 121 FLPCLCMSLFAFAVTIASCWIPETLHKHNEDGVSLDVSCDALESACGSNAEFKQDEGSEE 180
LPC +S FA VT+ C+IPETLH H D +S D S D LE+A ++ G E
Sbjct: 212 ALPCFTISAFALLVTVLCCFIPETLHNHKLDSLSHDDSYDILEAASHESSPSTGKAGKNE 271
Query: 181 ATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLAI 240
A +SL+KNWP +SS IVYCV LHD AY+EIF+LWA SP KYGGLSYST G VLAI
Sbjct: 272 RKASQSLLKNWPLMSSIIVYCVLCLHDTAYSEIFALWANSPRKYGGLSYSTNEVGTVLAI 331
Query: 241 SGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASV 300
SG L FQ+ +YP E+++GP+++TR AG L IP+ SY +IA LSG SL+L++NCAS+
Sbjct: 332 SGLGLFSFQVFVYPLAEKLLGPVLVTRYAGALMIPIQMSYPFIAGLSGLSLSLMLNCASI 391
Query: 301 MKNVLSVSIMTGLFLLQNRAVSQKRQGA 328
+ NVLSVS +TGL +LQNRAV Q ++GA
Sbjct: 392 LINVLSVSAITGLLILQNRAVDQSQRGA 419
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| TAIR|locus:2177105 ZIFL1 "zinc induced facilitator-like 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1048 (374.0 bits), Expect = 6.5e-106, P = 6.5e-106
Identities = 208/348 (59%), Positives = 260/348 (74%)
Query: 1 ALTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI 60
A TSV WG+VADR GRKPVI+IG +VV+FNTLFGLS++FWMAI TRF LG+ NGLLGPI
Sbjct: 91 AFTSVAWGLVADRYGRKPVILIGTASVVVFNTLFGLSLNFWMAIITRFCLGSFNGLLGPI 150
Query: 61 KAYACEILRDQHKTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPY 120
KAYA EI RD+++ L LS +STAWG GLIIGPA+GGFLAQPA++YP FS++S+FGKFP+
Sbjct: 151 KAYAMEIFRDEYQGLALSAVSTAWGIGLIIGPAIGGFLAQPAKQYPSLFSQDSIFGKFPF 210
Query: 121 FLPCLCMSLFAFAVTIASCWIPETLHKHNEDGVSLDVSCDALESACGSNAEFKQDEGSEE 180
FLPCL +S+FAF VTI S IPETLH H + D S DAL+ ++ + E
Sbjct: 211 FLPCLAISVFAFLVTIVSSRIPETLHNHKFND---DESYDALKDL----SDDPESNKVAE 263
Query: 181 ATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLAI 240
K SL+ NWP ISS IVYCVFSLHD+AYTEIFSLWA SP KYGGL YST + G VLA
Sbjct: 264 RNGKSSLLNNWPLISSIIVYCVFSLHDMAYTEIFSLWANSPRKYGGLGYSTADVGSVLAF 323
Query: 241 SGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASV 300
SGF LL+FQL+LY Y ER++GPII+TRI+G L++ +L+ Y IA LSG +L + + ASV
Sbjct: 324 SGFGLLIFQLSLYSYAERLLGPIIVTRISGSLAMVVLSCYPLIAKLSGLALTVTVTSASV 383
Query: 301 MKNVLSVSIMTGLFLLQNRAVSQKRQGAGFLPGNQMIFFILNLVEALG 348
K+VL S +TGLF+LQN+AV Q ++GA N + ++L +A+G
Sbjct: 384 AKSVLGTSAITGLFILQNKAVRQDQRGAA----NGIAMTAMSLFKAIG 427
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| TAIR|locus:2101109 ZIFL2 "AT3G43790" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 917 (327.9 bits), Expect = 5.0e-92, P = 5.0e-92
Identities = 181/330 (54%), Positives = 243/330 (73%)
Query: 1 ALTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI 60
ALTS+ WG +ADR GRKP+I+IG +V+IFNTLFGLS SFW+AI+ RFLLG N LLG I
Sbjct: 90 ALTSIFWGKLADRYGRKPIILIGTFSVIIFNTLFGLSTSFWLAISVRFLLGCFNCLLGVI 149
Query: 61 KAYACEILRDQHKTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPY 120
+AYA E++ +++ L LS +ST+ G GLI+GPA+GG+LAQPAEKYP FS+ S+FG+FPY
Sbjct: 150 RAYASEVVSEEYNALSLSVVSTSRGIGLILGPAIGGYLAQPAEKYPNIFSQSSVFGRFPY 209
Query: 121 FLPCLCMSLFAFAVTIASCWIPETLHKHNE--DGVSLDVSCDALESACGSNAEFKQDEGS 178
FLP L +S++A AV IA W+PETLH G + ES G DE
Sbjct: 210 FLPSLVISVYATAVLIACWWLPETLHTRCRIAQGRLNPTELNDDESRGGG-----LDE-- 262
Query: 179 EEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVL 238
++ K SL++N P ++ IVYCVFSL +IAY EIFSLWA+S YGGLS+S+++ G+VL
Sbjct: 263 QKIINKPSLLRNRPLMAIIIVYCVFSLQEIAYNEIFSLWAVSDRSYGGLSFSSQDVGEVL 322
Query: 239 AISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCA 298
AISG LLVFQL +YP +E+ +G + + R++ VL IPLL+ Y YIA+LSG +L L+INCA
Sbjct: 323 AISGLGLLVFQLLVYPPLEKSVGLLAVIRLSAVLLIPLLSCYPYIALLSGVTLHLVINCA 382
Query: 299 SVMKNVLSVSIMTGLFLLQNRAVSQKRQGA 328
S++KN LS+S++TGLF++ N+AV Q ++GA
Sbjct: 383 SIIKNALSISLVTGLFIMLNKAVPQNQRGA 412
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| ASPGD|ASPL0000053890 AN0890 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 260 (96.6 bits), Expect = 7.8e-29, Sum P(2) = 7.8e-29
Identities = 66/188 (35%), Positives = 102/188 (54%)
Query: 5 VLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPIKAYA 64
+ WG ++D+ GRKPV+I+G + I +FG + + A+ R L G LNG +G ++
Sbjct: 85 MFWGRMSDKIGRKPVLIMGLVGTAISMVVFGFAPNLATAMIARALGGLLNGNIGVLQTTV 144
Query: 65 CEILR-DQHKTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLP 123
EI+ +H+ S + W G IIGPA+GG L+QP + YP FS ES+F KFP+ LP
Sbjct: 145 AEIVTVKEHQPRAYSIMPFVWCLGSIIGPAMGGALSQPCDNYPWLFSGESIFKKFPFLLP 204
Query: 124 CL-CMSLFAFAVTIASCWIPETLH---KHNED-GVSLDVSCDALESAC-GSNAEF--KQD 175
L C+ + + + ++ ET H K+ D G+ L + L C GS + +QD
Sbjct: 205 NLVCVVVLMTGIVVGLLFLEET-HPEKKYRRDRGLELG---NWLIGRCWGSRVQAVEEQD 260
Query: 176 EGSEEATA 183
++ A A
Sbjct: 261 VKADSADA 268
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| DICTYBASE|DDB_G0269964 DDB_G0269964 "Uncharacterized membrane protein YCR023C" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 242 (90.2 bits), Expect = 1.2e-25, Sum P(2) = 1.2e-25
Identities = 53/138 (38%), Positives = 73/138 (52%)
Query: 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPIK 61
L+S WG +ADR GRKP++I G + VI G S S M I +R + G LNG +G +K
Sbjct: 73 LSSFFWGKMADRLGRKPILIFGSVGSVISLLCIGTSKSLVMLILSRSINGLLNGNIGVVK 132
Query: 62 AYACEILRDQHKTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYF 121
Y E ++ + WG G I+GP++GG LA P + F +F FP+F
Sbjct: 133 TYIGECTDKTNQVEAFGWVGLTWGLGSILGPSIGGLLADPVKNMSSIFKGSKLFELFPFF 192
Query: 122 LPCLCMSLFAFAVTIASC 139
LP L + AF +TI C
Sbjct: 193 LPNL---VIAF-LTIIGC 206
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| ASPGD|ASPL0000011265 AN4019 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 261 (96.9 bits), Expect = 5.8e-24, Sum P(2) = 5.8e-24
Identities = 54/149 (36%), Positives = 85/149 (57%)
Query: 1 ALTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI 60
A +V WG +DR GRKP+I++G ++ + FGLS S M I R ++G +NG +G I
Sbjct: 64 AAMAVYWGTASDRFGRKPIILLGLTATMVLSLAFGLSKSLPMLITCRGMIGFMNGNVGII 123
Query: 61 KAYACEILRDQH-KTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFP 119
+ E+++D+ + S + W G I GP+ GG LA+P EKYP+ F F ++P
Sbjct: 124 RTMVAEMVQDKELQPRAFSIMPMVWTIGSIFGPSFGGSLARPTEKYPEIFGHSWFFKEYP 183
Query: 120 YFLPCLCMSLFAFAVTIAS--CWIPETLH 146
+ LP + F F + I++ ++ ETLH
Sbjct: 184 FVLPNMVAGFF-FIIGISTGFLFLHETLH 211
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| ASPGD|ASPL0000051539 AN1423 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 237 (88.5 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 53/146 (36%), Positives = 82/146 (56%)
Query: 1 ALTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI 60
A T + WG ++DR GRKPVII G ++ + G + ++W+A+ R L G LNG +G I
Sbjct: 29 AFTGMFWGALSDRVGRKPVIISGLAGTIVSLLIVGFAPNYWVALLGRGLGGLLNGNIGVI 88
Query: 61 KAYACEIL-RDQHKTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFP 119
+ EI+ R +H+ PA+GG LA+PA+ YP FS++ +FG+FP
Sbjct: 89 QTMVGEIVKRPEHER-----------------PAIGGLLAKPADNYPSVFSRDGIFGRFP 131
Query: 120 YFLP-CLCMSLFAFAVTIASCWIPET 144
Y LP +C +L ++ A ++ ET
Sbjct: 132 YLLPNVVCSTLLLGSILFAWAFLQET 157
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| DICTYBASE|DDB_G0282945 DDB_G0282945 [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 204 (76.9 bits), Expect = 1.2e-20, Sum P(2) = 1.2e-20
Identities = 43/130 (33%), Positives = 70/130 (53%)
Query: 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPIK 61
++S WG ++ GR+P +++G I +I T G S ++ M + RFL G LNG + K
Sbjct: 133 VSSFFWGWFSNYRGRRPSLLLGLIGSMICLTGVGFSRNYPMVVVFRFLSGLLNGNVSIAK 192
Query: 62 AYACEILRDQHKTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYF 121
EI ++ S + +WG G II P +GGF + +K+P+ ++F +FPY
Sbjct: 193 TMLGEITDSSNQAKAFSFIGLSWGVGGIIAPLIGGFFSNFCKKHPELLGDGNIFCRFPYL 252
Query: 122 LPCLCMSLFA 131
LP + LF+
Sbjct: 253 LPNIICVLFS 262
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| CGD|CAL0004954 orf19.3432 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 181 (68.8 bits), Expect = 1.2e-17, Sum P(3) = 1.2e-17
Identities = 39/108 (36%), Positives = 64/108 (59%)
Query: 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPIK 61
L ++ WG ++++ GRK ++IIG + I LFG + +++ A+ R L G LNG + ++
Sbjct: 73 LFAIHWGTMSEKLGRKLILIIGLLGTSISLLLFGFARNYYWALIARCLAGVLNGNVAVLR 132
Query: 62 AYACEI-LRDQHKTLGLSTLSTAWGTGLIIGPAVGG--FLAQPAEKYP 106
EI + +H+ L ST+ + G IIGPA+GG +L +P EK P
Sbjct: 133 TMIGEIAVEKRHQPLAFSTMPLLFNFGAIIGPAIGGSTYLTKPKEKSP 180
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| UNIPROTKB|Q2KEH9 MGCH7_ch7g1057 "Putative uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 188 (71.2 bits), Expect = 2.3e-17, Sum P(2) = 2.3e-17
Identities = 43/148 (29%), Positives = 74/148 (50%)
Query: 3 TSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPIKA 62
T+++WG ++DR GRKPV+++G + ++FGL +W + + +G LNG +
Sbjct: 173 TNLVWGAMSDRIGRKPVLLLGTALLAGCFSVFGLCTKYWHVVLVQVAMGLLNGNAAVVPT 232
Query: 63 YACEILRDQHKTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFL 122
E+ +++ + L + G I GPA+GG L P S S +P+
Sbjct: 233 CLGELTDRSNQSSAFTWLPVMYSIGSITGPALGGLLI------PDDLSDSS----YPFLY 282
Query: 123 P-CLCMSLFAFAVTIASCWIPETLHKHN 149
P + +L FAV + S W ETL +++
Sbjct: 283 PNVVSAALLVFAVVVLSIWYEETLEEYD 310
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00033972001 | SubName- Full=Chromosome undetermined scaffold_71, whole genome shotgun sequence; (548 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 362 | |||
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 8e-11 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 2e-09 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 1e-08 | |
| PRK09874 | 408 | PRK09874, PRK09874, drug efflux system protein Mdt | 6e-08 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 6e-07 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 1e-04 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 2e-04 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 8e-11
Identities = 58/296 (19%), Positives = 102/296 (34%), Gaps = 43/296 (14%)
Query: 1 ALTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGP- 59
AL L G ++DR GR+ V++IG + + L + S W+ + R L G G L P
Sbjct: 46 ALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPA 105
Query: 60 IKAYACEILRDQHKTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFP 119
A + + + L LS +G G +GP +GG LA F + F
Sbjct: 106 AAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLAS-------LFGWRAAFL--- 155
Query: 120 YFLPCLCMSLFAFAVTIASCWIPETLHKHNEDGVSLDVSCDALESACGSNAEFKQDEGSE 179
+ L A +A+ +P + + ++ +
Sbjct: 156 -----ILAILALLAAVLAALLLPRPPPES-------------------KRPKPAEEAPAP 191
Query: 180 EATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLA 239
A K L+++ + F+L P L S AG +L
Sbjct: 192 LVPAWKLLLRDPVLWLLLALLLFGFA-------FFALLTYLPLYQEVLGLSALLAGLLLG 244
Query: 240 ISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLI 295
++G + +L L +R+ G +A +L I +++ L+
Sbjct: 245 LAGLLGAIGRLLLGRLSDRL-GRRRRLLLALLLLILAALGLALLSLTESSLWLLVA 299
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Length = 346 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 2e-09
Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Query: 1 ALTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI 60
AL S+L G ++DR GR+ V+++G + + + L + S W+ + RFLLG G L P
Sbjct: 48 ALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPA 107
Query: 61 K-AYACEILRDQHKTLGLSTLSTAWGTGLIIGPAVGGFLAQ 100
A E + + L S +G G ++GP +GG LA+
Sbjct: 108 AAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE 148
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MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 1e-08
Identities = 42/145 (28%), Positives = 63/145 (43%), Gaps = 16/145 (11%)
Query: 1 ALTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI 60
+ S L G++ DR GRKPV+++G V+ +F LS + + I RFL G
Sbjct: 12 LIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVA 71
Query: 61 -KAYACEILRDQHKTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFP 119
A +I + + + L +S G ++GP +GG LAQ + F
Sbjct: 72 GAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQ-------FLGWRAPF---- 120
Query: 120 YFLPCLCMSLFAFAVTIASCWIPET 144
FL L L AF + +PET
Sbjct: 121 LFLAILA--LAAFILLA--FLLPET 141
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Length = 141 |
| >gnl|CDD|182127 PRK09874, PRK09874, drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Score = 53.4 bits (128), Expect = 6e-08
Identities = 34/99 (34%), Positives = 49/99 (49%)
Query: 1 ALTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI 60
A+ S WG +ADR GRK +++ + + I L GL+ + W + R LLG L G +
Sbjct: 68 AIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGGFVPNA 127
Query: 61 KAYACEILRDQHKTLGLSTLSTAWGTGLIIGPAVGGFLA 99
A + L TLST +G ++GP GG LA
Sbjct: 128 NALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLA 166
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Length = 408 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 6e-07
Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Query: 1 ALTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLG-ALNGLLGP 59
A ++ +G +ADR GR+ V++ + +F L L+ + + RFL G L GL+
Sbjct: 66 AFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPN 125
Query: 60 IKAYACEILRDQHKTLGLSTLSTAWGTGLIIGPAVGGFL 98
+ A E + + + + + G +G + G+L
Sbjct: 126 LNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWL 164
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[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 14/50 (28%), Positives = 28/50 (56%)
Query: 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLG 51
L S ++G ++DR GRK V+++ + + L S ++ + + R L+G
Sbjct: 142 LGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVG 191
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[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 1/101 (0%)
Query: 1 ALTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI 60
AL + L ++ R R+ +++ ++ N L L+ SF + + R L G +G+ I
Sbjct: 62 ALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSI 121
Query: 61 -KAYACEILRDQHKTLGLSTLSTAWGTGLIIGPAVGGFLAQ 100
A A ++ + L+ + T ++G +G FL Q
Sbjct: 122 AAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQ 162
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Length = 394 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 362 | |||
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.97 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.97 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.97 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.97 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.97 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.96 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.96 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.96 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.96 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.96 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.96 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.96 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.96 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.96 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.96 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.96 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.96 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.96 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.96 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.96 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.96 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.96 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.96 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.95 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.95 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.95 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.95 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.95 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.95 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.95 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.95 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.95 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.95 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.95 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.95 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.95 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.95 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.95 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.95 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.95 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.95 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.95 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.94 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.94 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.94 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.94 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.94 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.94 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.94 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.94 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.94 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.94 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.93 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.93 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.93 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.93 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.93 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.93 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.93 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.93 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.93 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.93 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.92 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.92 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.92 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.92 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.92 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.92 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.92 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.92 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.92 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.92 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.92 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.92 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.92 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.91 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.91 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.9 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.9 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.9 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.9 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.89 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.89 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.88 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.88 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.87 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.87 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.86 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.86 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.85 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.84 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.83 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.83 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.81 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.8 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.8 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.79 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.79 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.78 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.77 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.77 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.76 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.76 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.75 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.72 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.71 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.7 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.7 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.68 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.68 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.67 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.65 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.65 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.56 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.56 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.5 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.47 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.46 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.45 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.45 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.39 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.39 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.36 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.35 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.34 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.3 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.27 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.25 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.23 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.21 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.18 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.15 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.14 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.11 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.11 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.1 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.09 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.06 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.05 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.02 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.01 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.99 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 98.98 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 98.96 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 98.95 | |
| PRK10054 | 395 | putative transporter; Provisional | 98.94 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 98.93 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 98.92 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 98.9 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 98.89 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 98.88 | |
| PRK03699 | 394 | putative transporter; Provisional | 98.87 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 98.86 | |
| PRK10504 | 471 | putative transporter; Provisional | 98.85 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 98.84 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 98.83 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 98.8 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 98.8 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.8 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 98.77 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 98.76 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 98.76 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 98.76 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.75 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 98.75 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 98.74 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.74 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 98.7 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 98.7 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.68 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 98.68 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.68 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 98.68 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 98.67 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 98.66 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 98.66 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.66 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 98.65 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.65 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.65 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.64 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 98.64 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.62 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.62 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 98.62 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 98.61 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 98.59 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 98.59 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 98.58 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.56 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.56 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.53 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.53 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.52 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 98.52 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.52 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 98.51 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 98.5 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.49 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 98.48 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.47 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.46 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.44 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.43 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.43 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.42 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.41 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.4 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.39 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.39 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.38 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.37 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.37 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.36 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.36 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.35 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.34 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.33 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 98.32 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.31 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.31 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.3 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.3 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.25 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 98.24 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.23 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.22 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.21 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.18 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.17 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.14 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 98.14 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.09 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 98.08 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.08 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 98.03 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.03 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.02 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.01 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 98.01 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.98 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 97.97 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 97.95 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 97.93 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 97.77 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 97.76 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 97.6 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 97.51 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 97.49 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 97.46 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 97.37 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 97.33 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 97.14 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 97.12 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 97.07 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 96.92 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 96.88 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 96.81 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 96.77 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 96.74 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 96.72 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 96.71 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 96.33 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 96.23 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 95.99 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 95.82 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 95.63 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 95.53 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 95.17 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 95.02 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 94.37 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 94.23 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 93.29 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 92.76 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 92.47 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 90.21 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 88.51 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 85.28 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 84.48 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 83.7 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 82.54 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 82.22 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 80.83 |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-31 Score=227.09 Aligned_cols=301 Identities=19% Similarity=0.184 Sum_probs=233.0
Q ss_pred CcccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHH
Q 041273 1 ALTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLST 79 (362)
Q Consensus 1 ~i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~ 79 (362)
++++|+...+.||+.||++++....++.++++++++++||+.++++|++.|+..|.+.+. .++..|..|++||++++++
T Consensus 62 ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiai 141 (394)
T COG2814 62 ALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALAL 141 (394)
T ss_pred HHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHH
Confidence 367899999999999999999999999999999999999999999999999999998887 9999999999999999999
Q ss_pred HHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHH-HHHHHhhcccccCCCCcCCcccccc
Q 041273 80 LSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFA-VTIASCWIPETLHKHNEDGVSLDVS 158 (362)
Q Consensus 80 ~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~ 158 (362)
...+.+++.++|.++|.++.| .+|||..| .+.+.++++ .+..+..+| |+..+++++.
T Consensus 142 v~~G~tlA~v~GvPLGt~ig~-------~~GWR~~F---------~~ia~l~ll~~~~~~~~lP--~~~~~~~~~~---- 199 (394)
T COG2814 142 VFTGLTLATVLGVPLGTFLGQ-------LFGWRATF---------LAIAVLALLALLLLWKLLP--PSEISGSLPG---- 199 (394)
T ss_pred HHHHHHHHHHHhccHHHHHHH-------HhhHHHHH---------HHHHHHHHHHHHHHHHhCC--CccCCCCCCc----
Confidence 999999999999999999999 99999988 677777766 445556788 2211111111
Q ss_pred chhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHH
Q 041273 159 CDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVL 238 (362)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~ 238 (362)
+..+..+.+|+|+++...+...+.....+...++...++.+. .|+|++..++.+
T Consensus 200 ---------------------~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v-----~g~s~~~vs~~L 253 (394)
T COG2814 200 ---------------------PLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESV-----AGFSVSAVSLVL 253 (394)
T ss_pred ---------------------chhHHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHc-----cCCCHhHHHHHH
Confidence 123456789999999999888888777777766666666665 799999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHh
Q 041273 239 AISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMTGLFLLQN 318 (362)
Q Consensus 239 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (362)
..+++++.+++ .+.|++.|| +.++.+.....+..+.++.+.+..... +. ..+...+ .+....|..+.++.
T Consensus 254 l~~Gv~~~~Gn-~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~----~~-~~~~~~~---wg~a~~~~~~~~~~ 323 (394)
T COG2814 254 LAFGIAGFIGN-LLGGRLADR-GPRRALIAALLLLALALLALTFTGASP----AL-ALALLFL---WGFAFSPALQGLQT 323 (394)
T ss_pred HHHHHHHHHHH-HHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchH----HH-HHHHHHH---HHHHhhhhhhHHHH
Confidence 99999999999 999999999 888888888787777777766655432 11 1122222 33444455555555
Q ss_pred hhcc---ccccCCCCC----------------------CChhHHHHHHHHHHHHHHHhhccccccc
Q 041273 319 RAVS---QKRQGAGFL----------------------PGNQMIFFILNLVEALGVILTFKPFLIQ 359 (362)
Q Consensus 319 ~~~p---~~~~~~~~~----------------------~g~~~~f~~~~~~~~i~~~~~~~~~l~~ 359 (362)
+..+ +++...... .|+....++.++..+++.++.+.....+
T Consensus 324 ~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~~~ 389 (394)
T COG2814 324 RLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSARKD 389 (394)
T ss_pred HhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5444 444321111 1678889999999999888876544433
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-29 Score=226.84 Aligned_cols=231 Identities=17% Similarity=0.169 Sum_probs=170.3
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHH--------HHHHHHHHHhhhcCcchhH-HHHHHhhhcccc
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFW--------MAIATRFLLGALNGLLGPI-KAYACEILRDQH 72 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~ 72 (362)
++++++|+++||+|||+++..+.++++++++++++++++. .+++.|+++|++.|...|. .++++|++|+|+
T Consensus 78 ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~ 157 (432)
T PRK10406 78 IGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR 157 (432)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc
Confidence 6788999999999999999999999999999999988764 5889999999999988887 999999999999
Q ss_pred chhhHHHHHHhhhhhhhhhhhhhhhhcCcccc-CCcccccccccccccchhhHHHHHHHHHHHHHHHhhcccccCCCCcC
Q 041273 73 KTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEK-YPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLHKHNED 151 (362)
Q Consensus 73 r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~-~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 151 (362)
|+++.+..+.+...|..+++.+...+....++ ....+|||..| ++.++++++.+.....+||++++++++
T Consensus 158 rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F---------~i~~~~~ll~~~~~~~~~e~~~~~~~~ 228 (432)
T PRK10406 158 KGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPF---------ALGAVLAVVALWLRRQLDETSQQETRA 228 (432)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHH---------HHHHHHHHHHHHHHhcCCCCchHHHhh
Confidence 99999999988888888888776555421100 00146787776 666666655554445566654321100
Q ss_pred CccccccchhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHH-HHHHhHHHHHHHhHhcccccccccCCC
Q 041273 152 GVSLDVSCDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVF-SLHDIAYTEIFSLWAISPWKYGGLSYS 230 (362)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~s 230 (362)
+ + +..+.++++|+++.+...+...+. .........++|.|+.+. +|++
T Consensus 229 ~---~-----------------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~-----~g~s 277 (432)
T PRK10406 229 L---K-----------------------EAGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNT-----AGMH 277 (432)
T ss_pred h---c-----------------------ccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCC
Confidence 0 0 012355677887776655544432 444555666788877654 6888
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHH
Q 041273 231 TENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLS 273 (362)
Q Consensus 231 ~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~ 273 (362)
..+.+...........+++ ++.+++.||++||+.+..+..+.
T Consensus 278 ~~~~~~~~~i~~~~~~i~~-~~~G~l~Dr~grr~~~~~~~~~~ 319 (432)
T PRK10406 278 ANVASGIMTAALFVFMLIQ-PLIGALSDKIGRRTSMLCFGSLA 319 (432)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCchHHHHHHHHHH
Confidence 8888888888788888887 77799999999998876665543
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-28 Score=226.35 Aligned_cols=244 Identities=13% Similarity=0.123 Sum_probs=166.9
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHH--------HHHHHHHHhhhcCcchhH-HHHHHhhhcccc
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWM--------AIATRFLLGALNGLLGPI-KAYACEILRDQH 72 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~--------l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~ 72 (362)
+|+++.|+++||+|||+++..+.++++++++++++++|+++ +++.|+++|++.|...+. .++++|++|+|+
T Consensus 72 ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~ 151 (490)
T PRK10642 72 LGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK 151 (490)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC
Confidence 68899999999999999999999999999999999999875 789999999999988777 999999999999
Q ss_pred chhhHHHHHHhhhhhhhhhhhhhhhhcCcccc-CCcccccccccccccchhhHHHHHHHHHHHHHHHhhcccccCCCCcC
Q 041273 73 KTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEK-YPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLHKHNED 151 (362)
Q Consensus 73 r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~-~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 151 (362)
|+++.++.+.+..+|..+|+.+...+...... ....+|||+.| ++.++++++.++....+||+|++...+
T Consensus 152 Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f---------~i~~~~~l~~~~~~~~~~esp~~~~~~ 222 (490)
T PRK10642 152 RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPF---------FIALPLGIIGLYLRHALEETPAFQQHV 222 (490)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHH---------HHHHHHHHHHHHHHHcCCCChhHHHHH
Confidence 99999999988888888888776554321100 00146787776 555555554555556788887643211
Q ss_pred CccccccchhhhhhcCCCCccccccCcccchhhhccccc-chh-HHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCC
Q 041273 152 GVSLDVSCDALESACGSNAEFKQDEGSEEATAKKSLMKN-WPF-ISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSY 229 (362)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 229 (362)
++.++ ... +.. +++...+.++++++ ++. .......++..........++|.|+.+. +|+
T Consensus 223 ~~~~~--------~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~g~ 283 (490)
T PRK10642 223 DKLEQ--------GDR--EGL----QDGPKVSFKEIATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHN-----LHY 283 (490)
T ss_pred Hhhhh--------hcc--ccc----cccccCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCC
Confidence 11000 000 000 00011233444442 222 2222222333344455566778777554 677
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Q 041273 230 STENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSI 274 (362)
Q Consensus 230 s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~ 274 (362)
+..+.+.......++..++. ++.+++.||+|||+.+..+.....
T Consensus 284 s~~~~~~~~~~~~~~~~~~~-~~~g~l~dr~grr~~~~~~~~~~~ 327 (490)
T PRK10642 284 SEDHGVLIIIAIMIGMLFVQ-PVMGLLSDRFGRRPFVILGSVALF 327 (490)
T ss_pred CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccHHHHHHHHHHHH
Confidence 88777777777777777776 888999999999998877765433
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-28 Score=220.33 Aligned_cols=298 Identities=15% Similarity=0.123 Sum_probs=207.3
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTL 80 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~ 80 (362)
+++++.|+++||+|||+++..+.++.+++++.+.+++|++.+++.|+++|++.+...+. .+++.|++|+|||++++++.
T Consensus 59 ~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~ 138 (390)
T PRK03545 59 LMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLL 138 (390)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHH
Confidence 46789999999999999999999999999999999999999999999999998887777 99999999999999999999
Q ss_pred HHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHH-HHHhhcccccCCCCcCCccccccc
Q 041273 81 STAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVT-IASCWIPETLHKHNEDGVSLDVSC 159 (362)
Q Consensus 81 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~ 159 (362)
+.+.++|..+||.+++.+.+ ..|||+.| .+.++++++.. .....+||+++++ + +
T Consensus 139 ~~~~~~g~~ig~~l~~~l~~-------~~gw~~~f---------~~~~~~~~l~~~~~~~~~~~~~~~~---~---~--- 193 (390)
T PRK03545 139 ATGTALAMVLGLPLGRVIGQ-------YLGWRTTF---------LAIGGGALITLLLLIKLLPLLPSEH---S---G--- 193 (390)
T ss_pred HHHHHHHHHHHhhHHHHHHH-------HhcHHHHH---------HHHHHHHHHHHHHHHHhCCCCCCCC---c---c---
Confidence 99999999999999999987 78898877 55555554433 3334456543211 0 0
Q ss_pred hhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHHH
Q 041273 160 DALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLA 239 (362)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~ 239 (362)
..++.++.+|+|+++......++..........+.+.++.+. .|+|+.+.+.+..
T Consensus 194 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~g~s~~~~~~~~~ 248 (390)
T PRK03545 194 --------------------SLKSLPLLFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQV-----AGLSENFATLLLL 248 (390)
T ss_pred --------------------hHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCccHHHHHHH
Confidence 112345678888887665555544444444444555555443 6889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhh
Q 041273 240 ISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMTGLFLLQNR 319 (362)
Q Consensus 240 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (362)
..+++.++++ +..+++.||+++|+.. .+..+...+...+.... + ..+. ......+.+.......+.......+
T Consensus 249 ~~~~~~~~g~-~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~~--~--~~~~-~~~~~~l~g~~~~~~~~~~~~~~~~ 321 (390)
T PRK03545 249 LFGGAGIIGS-VLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPAA--N--SEWH-LSVLSIFWGIAIMCIGLAMQVKVLK 321 (390)
T ss_pred HHHHHHHHHH-HHHHHHhhccchhHHH-HHHHHHHHHHHHHHHHh--c--hHHH-HHHHHHHHHHHHhcchHHHHHHHHH
Confidence 9999999998 8889999999887653 33333333332221111 1 1111 1122222222333334555666667
Q ss_pred hccccccC--CCC--------------------CCChhHHHHHHHHHHHHHHHhhcccc
Q 041273 320 AVSQKRQG--AGF--------------------LPGNQMIFFILNLVEALGVILTFKPF 356 (362)
Q Consensus 320 ~~p~~~~~--~~~--------------------~~g~~~~f~~~~~~~~i~~~~~~~~~ 356 (362)
..|+.|.. +.+ ..|++..|.+.+++.+++.+..++..
T Consensus 322 ~~~~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 322 LAPDATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 77754431 100 01578899999998888887766533
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-28 Score=220.25 Aligned_cols=316 Identities=12% Similarity=0.071 Sum_probs=199.3
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHH--------HHHHHHHHHhhhcCcchhH-HHHHHhhhcccc
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFW--------MAIATRFLLGALNGLLGPI-KAYACEILRDQH 72 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~ 72 (362)
+++++.|+++||+|||+++..+..+++++++++++++|++ .+++.|+++|++.|...+. ..++.|++|+|+
T Consensus 79 ~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~ 158 (438)
T PRK09952 79 LGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNK 158 (438)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCC
Confidence 5678899999999999999999999999999999999987 5888999999999998777 999999999999
Q ss_pred chhhHHHHHHhhhhhhhhhhhhhhhhcCccccC-CcccccccccccccchhhHHHHHHHHHHHHHHHhhcccccCCCCcC
Q 041273 73 KTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKY-PKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLHKHNED 151 (362)
Q Consensus 73 r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~-~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 151 (362)
|++..+..+.+..+|..+++.+...+.+..++. ...+|||..| ++.++..++........||++++.+++
T Consensus 159 rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f---------~~~~~~~l~~~~l~~~~~es~~~~~~~ 229 (438)
T PRK09952 159 KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPF---------LFSIVLVLIALWVRNGMEESAEFEQQQ 229 (438)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHH---------HHHHHHHHHHHHHHHhCCCChhHHHHH
Confidence 999999999999999999888777665311110 0146777666 555555444444444567765432211
Q ss_pred CccccccchhhhhhcCCCCccccccCcccchhhhcccccchhHHHHH-HHHHHHHHHhHHHHHHHhHhcccccccccCCC
Q 041273 152 GVSLDVSCDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTI-VYCVFSLHDIAYTEIFSLWAISPWKYGGLSYS 230 (362)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s 230 (362)
++.++ .++ .....+.+.|+|+.+.... ..++..........+.|.|..+. +|++
T Consensus 230 ~~~~~------------------~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~-----~g~s 284 (438)
T PRK09952 230 HEQAA------------------AKK--RIPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQN-----LGLP 284 (438)
T ss_pred hhccc------------------ccc--cCCHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCC
Confidence 11000 000 0011223456666555433 23333344445556677776554 6777
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhh
Q 041273 231 TENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIM 310 (362)
Q Consensus 231 ~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (362)
...........++...++. ++.++++||++||+.+..+.++..+....+....... ...+. ......+.++......
T Consensus 285 ~~~~~~~~~~~g~~~~i~~-~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~ 361 (438)
T PRK09952 285 RELFLNIGLLVGGLSCLTI-PCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQ-SIFWI-VFFSIMLANIAHDMVV 361 (438)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcC-ChHHH-HHHHHHHHHHHHHHHH
Confidence 7665555555566667776 7889999999999988877665544332222211111 11121 1122222223333445
Q ss_pred hHHHHHHhhhccccccC-CCC------------------------C-CChhHHHHHHHHHHHHHHHhhcc
Q 041273 311 TGLFLLQNRAVSQKRQG-AGF------------------------L-PGNQMIFFILNLVEALGVILTFK 354 (362)
Q Consensus 311 ~~~~~~~~~~~p~~~~~-~~~------------------------~-~g~~~~f~~~~~~~~i~~~~~~~ 354 (362)
+..+.+.+|.+|.+..+ +.- . .++..++...+++.+++.+..+.
T Consensus 362 ~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~ 431 (438)
T PRK09952 362 CVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALL 431 (438)
T ss_pred HHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 66778889998853321 100 0 02456677777777777666553
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-27 Score=211.89 Aligned_cols=296 Identities=13% Similarity=0.057 Sum_probs=195.9
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhHHHHHHhhhccccchhhHHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPIKAYACEILRDQHKTLGLSTLS 81 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~ 81 (362)
+++++.|+++||+|||+++..+......+.......+|++++++.|+++|++.+...+....++|++|+|+|++++++.+
T Consensus 41 i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~ 120 (368)
T TIGR00903 41 ALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAALGQPFLLNAFAPAASQIREERRDLVISLLS 120 (368)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhHhHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 57889999999999998877665555444333333379999999999999998875555777799999999999999999
Q ss_pred HhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHH-HHHHHhhcccccCCCCcCCccccccch
Q 041273 82 TAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFA-VTIASCWIPETLHKHNEDGVSLDVSCD 160 (362)
Q Consensus 82 ~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~ 160 (362)
.+..+|..+++.+++++.+ .+|||+.| ++.++++++ .++..+.+||+|++++++.+. +
T Consensus 121 ~~~~lG~~l~~~~~~~l~~-------~~gWr~~f---------~~~~~l~~~~~~~~~~~lp~~p~~~~~~~~~-~---- 179 (368)
T TIGR00903 121 FAMYLGIIFALAAGLKIYT-------AGGLQLLI---------IPIAAVAAAGIILVLAALPALPFQAAEGFGF-K---- 179 (368)
T ss_pred HHHHHHHHHHHHHHHHHHH-------ccchHHHH---------HHHHHHHHHHHHHHHHHcCCCCCCCCCCcch-H----
Confidence 9999999999999999988 78999887 565555554 445566789876543211000 0
Q ss_pred hhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHHHH
Q 041273 161 ALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLAI 240 (362)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~ 240 (362)
+..++.++++|||.++...+.+++......+..++.|.|+.+ .|++.. .+....+
T Consensus 180 ------------------~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~------~g~s~~-~~~~~~l 234 (368)
T TIGR00903 180 ------------------DAVKEFGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRP------AGLEDI-AGDAVAL 234 (368)
T ss_pred ------------------HHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------CCCChH-HHHHHHH
Confidence 011246778999999999999999888888888899999854 356654 5655555
Q ss_pred HHHHHHHHHHHHHHHHHHhhch---hHH-HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 041273 241 SGFSLLVFQLTLYPYVERMIGP---III-TRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMTGLFLL 316 (362)
Q Consensus 241 ~~~~~~~~~~~~~~~l~~~~g~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (362)
..+.+.++. +++.||..| |+. ........++....+.+... .+.. .....+.+++....++..+.+
T Consensus 235 ~~~~g~~g~----~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~-----~~~~-~~~~~l~~~~~~~~~~~~~~~ 304 (368)
T TIGR00903 235 AILAGLIGV----AVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELN-----RLAL-FAFIGIAGLLMLPAYAIIMDW 304 (368)
T ss_pred HHHHHHHHH----HHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccc-----cHHH-HHHHHHHHHhhhhhHHHHHHH
Confidence 555555554 555565543 333 22233333332222222111 1111 122222223444455667788
Q ss_pred HhhhccccccCCCC-C--------------------CChhHHHHHHHHHHHHHHHhhc
Q 041273 317 QNRAVSQKRQGAGF-L--------------------PGNQMIFFILNLVEALGVILTF 353 (362)
Q Consensus 317 ~~~~~p~~~~~~~~-~--------------------~g~~~~f~~~~~~~~i~~~~~~ 353 (362)
.+|.+|++..+... . .|.+..|.+.++..+++.+..+
T Consensus 305 ~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 305 IGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFISSAEAYFTFLAILITIAFAIAL 362 (368)
T ss_pred HHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 99999964432211 1 1456677778888887776654
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=218.91 Aligned_cols=343 Identities=18% Similarity=0.179 Sum_probs=239.2
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLS---VSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGL 77 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~ 77 (362)
+|+++.|.++||+|||..+.++.++..++.+++.++ +++.++.++|++.|+..|..... .-++.|..|++.||...
T Consensus 75 ~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g 154 (485)
T KOG0569|consen 75 IGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALG 154 (485)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHH
Confidence 688999999999999999999998888888777654 68999999999999999987776 99999999999999999
Q ss_pred HHHHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHhhcccccCCCCcCCccccc
Q 041273 78 STLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLHKHNEDGVSLDV 157 (362)
Q Consensus 78 ~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 157 (362)
...+.+..+|.+++..++.--.- + +...|+..+ ....+++++.++...++||+|++.-.+++++++
T Consensus 155 ~~~~~~~~~g~ll~~~~~l~~il--G---t~~~W~~l~---------~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~ 220 (485)
T KOG0569|consen 155 TLLQIGVVIGILLGQVLGLPSLL--G---TEDLWPYLL---------AFPLIPALLQLALLPFLPESPKYLLIKKGDEEE 220 (485)
T ss_pred HHHHHHHHHHHHHHHHHccHHhc--C---CCcchHHHH---------HHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHH
Confidence 99999999999998666542110 0 023344333 666777778888899999999986543222222
Q ss_pred cchhhhhhcCCCC---cccc-------c-cCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccc
Q 041273 158 SCDALESACGSNA---EFKQ-------D-EGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGG 226 (362)
Q Consensus 158 ~~~~~~~~~~~~~---~~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (362)
+.+.++.-.+.++ +.++ + .+++...+.+++++|++.+......+.....+. +....+++........+
T Consensus 221 A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq-~sGi~ai~~Yst~i~~~ 299 (485)
T KOG0569|consen 221 ARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQ-FSGINAIFFYSTSIFKT 299 (485)
T ss_pred HHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHH-hcCcceeHHHHHHHHHH
Confidence 4444443333222 1111 0 111244567889999888776554444333222 11222222222233334
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhh-H---HHHHHHHHHHH
Q 041273 227 LSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFS-L---ALLINCASVMK 302 (362)
Q Consensus 227 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~ 302 (362)
.|++..++-......+....+.+ +++.++.||.|||+++..+..++.+..+.+.......... . +..+.......
T Consensus 300 aG~~~~~a~~an~~~g~v~~~~t-~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~ 378 (485)
T KOG0569|consen 300 AGFTPEEAQYANLGIGIVNLLST-LVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFI 378 (485)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 68999999888899999999998 9999999999999999999998888766655443322222 2 23344445555
Q ss_pred HHHHHHhhhHHHHHHhhhccccccCCCCCC-----------------------ChhHHHHHHHHHHHHHHHhhccccccc
Q 041273 303 NVLSVSIMTGLFLLQNRAVSQKRQGAGFLP-----------------------GNQMIFFILNLVEALGVILTFKPFLIQ 359 (362)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-----------------------g~~~~f~~~~~~~~i~~~~~~~~~l~~ 359 (362)
..++.+..|..+-+.+|.+|++...+.... |. ..|..+.+.+.+..+.+++ ++||
T Consensus 379 ~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~-~lPE 456 (485)
T KOG0569|consen 379 ISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYR-YLPE 456 (485)
T ss_pred HhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHH-hCcc
Confidence 566777789999999999995443222111 33 6788888888888888876 9999
Q ss_pred cCC
Q 041273 360 RAT 362 (362)
Q Consensus 360 ~~~ 362 (362)
+|+
T Consensus 457 Tkg 459 (485)
T KOG0569|consen 457 TKG 459 (485)
T ss_pred cCC
Confidence 984
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-28 Score=218.40 Aligned_cols=323 Identities=13% Similarity=0.103 Sum_probs=216.8
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTL 80 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~ 80 (362)
+++++.|+++||+|||+++..+.++.+++..++++++|++.+++.|++.|++.+...+. ..++.|++|+|+|++++++.
T Consensus 44 ~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 123 (399)
T TIGR00893 44 VGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIF 123 (399)
T ss_pred HHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999998888777 99999999999999999999
Q ss_pred HHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHH-HHHhhcccccCCCCcCCccccccc
Q 041273 81 STAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVT-IASCWIPETLHKHNEDGVSLDVSC 159 (362)
Q Consensus 81 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~ 159 (362)
+...++|..++|.+++.+.+ ..+||+.| ...++..++.. ......||++++++..+++++ ..
T Consensus 124 ~~~~~~g~~~~~~~~~~l~~-------~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 186 (399)
T TIGR00893 124 NSAQGLGGIIGGPLVGWILI-------HFSWQWAF---------IIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEEK-YI 186 (399)
T ss_pred HHhchHHHHHHHHHHHHHHH-------hCCchHHH---------HHHHHHHHHHHHHhhheecCCCCccccCCHHHH-hh
Confidence 99999999999999999887 67787766 55555544433 333445665443221111111 00
Q ss_pred hhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHHH
Q 041273 160 DALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLA 239 (362)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~ 239 (362)
..+. ...+..+++++++.....++.+|+|+++...+..++..........++|.|+.+. .|.++.+.+.+..
T Consensus 187 --~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 258 (399)
T TIGR00893 187 --VVGG-LLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQE-----RGLSILEAGFMAS 258 (399)
T ss_pred --cchh-hccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----hcccHHHhhHHHH
Confidence 0000 0000011111222334566788899998888888888777777888888887665 6888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhHHHHH-HHHHHHHH---HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHH
Q 041273 240 ISGFSLLVFQLTLYPYVERMIGPIIITRI-AGVLSIPL---LTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMTGLFL 315 (362)
Q Consensus 240 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (362)
...+...+++ ++.+++.||+++|+.... ........ ............ ..+. ......+ ...+.+..+....
T Consensus 259 ~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~-~~~~~~~~~~~~~ 334 (399)
T TIGR00893 259 LPGIVGFIGM-ILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVN-IPYA-ALALVAL-GFFGLGAGAIGWA 334 (399)
T ss_pred HHHHHHHHHH-HHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccch-hHHH-HHHHHHH-HHhchhhhhHHHH
Confidence 9999998888 899999999998861111 11111111 111111111110 1111 1111112 2223335678888
Q ss_pred HHhhhccccccCCCC-----------------------CCC-hhHHHHHHHHHHHHHHHhhc
Q 041273 316 LQNRAVSQKRQGAGF-----------------------LPG-NQMIFFILNLVEALGVILTF 353 (362)
Q Consensus 316 ~~~~~~p~~~~~~~~-----------------------~~g-~~~~f~~~~~~~~i~~~~~~ 353 (362)
+.+|..|+++.+... ..| ++..|.+.+++.+++.+..+
T Consensus 335 ~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 335 LISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred HHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 999998854332110 014 67788888887777766544
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.3e-28 Score=226.81 Aligned_cols=143 Identities=20% Similarity=0.238 Sum_probs=122.0
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTL 80 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~ 80 (362)
++++++|+++||+|||++++++.++.+++.++++++++++.++++|++.|++.+...|. .++++|++|+++|++.+++.
T Consensus 217 iG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~ 296 (742)
T TIGR01299 217 VGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWL 296 (742)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999998887777 99999999999999999999
Q ss_pred HHhhhhhhhhhhhhhhhhcCccccCCccccccccc----ccccchhhHHHHHHHHHHHHHHHhhcccccCCCCcC
Q 041273 81 STAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMF----GKFPYFLPCLCMSLFAFAVTIASCWIPETLHKHNED 151 (362)
Q Consensus 81 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 151 (362)
..+..+|.++++.++..+.. .+||+... ...+|+...++.++.+++.++..+++||+|++...+
T Consensus 297 ~~~~~iG~ila~~la~~il~-------~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~ 364 (742)
T TIGR01299 297 CMFWMIGGIYAAAMAWAIIP-------HYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLEN 364 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------hccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHC
Confidence 99999999999999888775 55554321 123455555777777777777788999999875443
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.5e-29 Score=206.45 Aligned_cols=299 Identities=30% Similarity=0.495 Sum_probs=219.3
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhHHHHHHhhhccccchhhHHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPIKAYACEILRDQHKTLGLSTLS 81 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~ 81 (362)
+.++.+|.++||+|||+++++|++..++...+.++++|+..+.++|++.|+..|...++.++++|++++|+|+++++.+.
T Consensus 83 ~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~v~rAiisdV~sek~r~l~ms~v~ 162 (451)
T KOG2615|consen 83 ISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLSVIRAIISDVVSEKYRPLGMSLVG 162 (451)
T ss_pred HhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHhhcChhhccceeeeee
Confidence 56899999999999999999999999999999999999977777799999999999999999999999999999999999
Q ss_pred HhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHH-HHHHHhhcccccCCCCcCCccccccch
Q 041273 82 TAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFA-VTIASCWIPETLHKHNEDGVSLDVSCD 160 (362)
Q Consensus 82 ~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~ 160 (362)
...++|.++||.+||++.+ +. ..++++++..|.+...++... .....+++||+-+.+++++++.+
T Consensus 163 ~a~~lGfilGPmIGgyla~--------f~--~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~rk~~~~~~~---- 228 (451)
T KOG2615|consen 163 TAFGLGFILGPMIGGYLAQ--------FS--SISGSYPFALPCLLVFILAAGDVTFFPWFLPETLPLRKRNDEHST---- 228 (451)
T ss_pred hhhhcchhhcchhhhHHHh--------hH--hhhccCchHHHHHHHHHHHHHHHHHHHHhCCccccchhhcccccc----
Confidence 9999999999999999986 11 234477788888777777766 66777899999665544411111
Q ss_pred hhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccc--cccCCCchhhHHHH
Q 041273 161 ALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKY--GGLSYSTENAGQVL 238 (362)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~s~~~~g~~~ 238 (362)
.++..+.+ ++..+ ..........||++....+..+..+....+.+..+++.|..+.... +++|+++.+.|.++
T Consensus 229 -~~~~~~~~---~~~~~-~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl 303 (451)
T KOG2615|consen 229 -LQEAADDR---LALLK-FARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVL 303 (451)
T ss_pred -hhhhhhhh---hhhcc-hhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeee
Confidence 00000000 00000 0112233467888877777777777888888888888887766555 67999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc-h-hHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 041273 239 AISGFSLLVFQLTLYPYVERMIG-P-IIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMTGLFLL 316 (362)
Q Consensus 239 ~~~~~~~~~~~~~~~~~l~~~~g-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (362)
+..++.+.+.+..+.+++ +|.+ . +..+.....++....+++.. ......+++...+..+.+....+....+
T Consensus 304 ~~tGl~m~~~ql~~~~~l-~~~~~~~~a~l~~~l~~~vP~~llls~------~~~~~~l~~~s~l~sf~~A~~vt~Lt~L 376 (451)
T KOG2615|consen 304 STTGLLMLVIQLALVPIL-PRYKGNIKAVLLFSLLLIVPAFLLLSL------ARTPVVLYLGSTLKSFSTASVVTCLTSL 376 (451)
T ss_pred ehhhHHHHHHHHhccccc-cccccchhhHHHHHHHHHHHHHHHHhc------cccchhhhHHHHHHHHHHHHhhHHHHHH
Confidence 999999999984444443 3333 2 22333333332222222222 2233567777888888888889999999
Q ss_pred Hhhhcccccc
Q 041273 317 QNRAVSQKRQ 326 (362)
Q Consensus 317 ~~~~~p~~~~ 326 (362)
+++..|++..
T Consensus 377 v~~~~~~~qr 386 (451)
T KOG2615|consen 377 VHKYGPQSQR 386 (451)
T ss_pred HHhcCCcccc
Confidence 9999995444
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=220.77 Aligned_cols=300 Identities=13% Similarity=0.095 Sum_probs=208.4
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhh-ccccchhhHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEIL-RDQHKTLGLST 79 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~-~~~~r~~~~~~ 79 (362)
+++++.|+++||+|||++++.+.++..++++++++++|++.++++|+++|++.+...|. ...+.+.+ |+++|++++++
T Consensus 56 ~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~ 135 (495)
T PRK14995 56 GMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGV 135 (495)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999998887776 77777765 68999999999
Q ss_pred HHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHH-HHHHHhhcccccCCCCcCCcccccc
Q 041273 80 LSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFA-VTIASCWIPETLHKHNEDGVSLDVS 158 (362)
Q Consensus 80 ~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~ 158 (362)
.....++|..+||.+++++.+ +.|||+.| ++...++++ .++..+.+||++++++++.+.....
T Consensus 136 ~~~~~~~g~~~gp~lgg~l~~-------~~gwr~~f---------~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~ 199 (495)
T PRK14995 136 WAAVGSGGAAFGPLVGGILLE-------HFYWGSVF---------LINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHAL 199 (495)
T ss_pred HHHHHHHHHHHHHHHHHHhhc-------cCChHHHH---------HHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHH
Confidence 999999999999999999998 88998887 444444443 3444556777643322111111100
Q ss_pred c---------hhhhhhcCCCCcc------------------ccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHH
Q 041273 159 C---------DALESACGSNAEF------------------KQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYT 211 (362)
Q Consensus 159 ~---------~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (362)
. ...++..+..... ..+.+.+.+....+++|+|.+....+..++......+..
T Consensus 200 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~ 279 (495)
T PRK14995 200 MLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFIRTQLAASRPMIDMRLFTHRIILSGVVMAMTAMITLVGFE 279 (495)
T ss_pred HHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHhCCcccHHHHHHHHHHHHHHHHHH
Confidence 0 0011111100000 001111222334568899988887777777666666666
Q ss_pred HHHHhHhcccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 041273 212 EIFSLWAISPWKYGGLSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSL 291 (362)
Q Consensus 212 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (362)
.++|.|++.. .|+|+.++|..+....++..+++ ++.+++.||+|+|+.+..+..+..++...+......++.
T Consensus 280 ~~~~~~lq~v-----~g~s~~~ag~~~~~~~~~~~~~~-~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~-- 351 (495)
T PRK14995 280 LLMAQELQFV-----HGLSPLEAGMFMLPVMVASGFSG-PIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQ-- 351 (495)
T ss_pred HHHHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCch--
Confidence 7788887766 79999999999999999999998 899999999999998888887777666555443322211
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhhhcccccc
Q 041273 292 ALLINCASVMKNVLSVSIMTGLFLLQNRAVSQKRQ 326 (362)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 326 (362)
+. ......+.+.+.....+.......+..|+++.
T Consensus 352 ~~-~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~ 385 (495)
T PRK14995 352 WQ-AWGLMALLGFSAASALLASTSAIMAAAPPEKA 385 (495)
T ss_pred HH-HHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhc
Confidence 11 11222232333334445556666667774443
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-27 Score=214.13 Aligned_cols=219 Identities=14% Similarity=0.165 Sum_probs=169.2
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTL 80 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~ 80 (362)
+++++.|+++||+|||++++.+.++++++.+++.+++|++.++++|+++|++.+...+. ..++.|.+|+++|++++++.
T Consensus 66 ~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (413)
T PRK15403 66 ALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAII 145 (413)
T ss_pred HHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999988766666 88899999999999999999
Q ss_pred HHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHH-HHhhcccccCCCCcCCccccccc
Q 041273 81 STAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTI-ASCWIPETLHKHNEDGVSLDVSC 159 (362)
Q Consensus 81 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~ 159 (362)
.....+|..+||.+++.+.+ ..|||+.| ++.++..++..+ ..+.+||++++++++. +.
T Consensus 146 ~~~~~~~~~~g~~lg~~l~~-------~~gw~~~f---------~~~~~~~~i~~~~~~~~lp~~~~~~~~~~-~~---- 204 (413)
T PRK15403 146 TSIVLVAPIIGPLSGAALMH-------FVHWKVLF---------AIIAVMGLIAFVGLLLAMPETVKRGAVPF-SA---- 204 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------hcCHHHHH---------HHHHHHHHHHHHHHHHhCCCCccccCCCC-Ch----
Confidence 99999999999999999987 77888877 555555554433 3456788654211110 00
Q ss_pred hhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHHH
Q 041273 160 DALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLA 239 (362)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~ 239 (362)
++..++.++++|||+++...+...+.......+....|.++.+. +|+++.+.++...
T Consensus 205 ------------------~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~-----~g~s~~~~gl~~~ 261 (413)
T PRK15403 205 ------------------KSVLRDFRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVILIDA-----GGMTTSQFAWTQV 261 (413)
T ss_pred ------------------HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHh-----cCCCHHHHHHHHH
Confidence 01234567788999999888877776666667767778887665 6899999999887
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhHH
Q 041273 240 ISGFSLLVFQLTLYPYVERMIGPIII 265 (362)
Q Consensus 240 ~~~~~~~~~~~~~~~~l~~~~g~~~~ 265 (362)
....+..+++ .+.+++.++..+++.
T Consensus 262 ~~~~~~~i~~-~l~~~~~~~~~~~~~ 286 (413)
T PRK15403 262 PVFGAVIVAN-AIVARFVKDPTEPRF 286 (413)
T ss_pred HHHHHHHHHH-HHHHHHhccCCchhH
Confidence 7777777776 555555443333333
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-27 Score=219.50 Aligned_cols=350 Identities=14% Similarity=0.112 Sum_probs=202.3
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhh------HHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccch
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVS------FWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKT 74 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~ 74 (362)
+++++.|+++||+|||+++..+.++..++.++++++++ ++.+++.|+++|++.|...+. ..+++|++|+++|+
T Consensus 71 ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg 150 (502)
T TIGR00887 71 AGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRG 150 (502)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHH
Confidence 57899999999999999999999999999999888765 789999999999999988777 99999999999999
Q ss_pred hhHHHHHHhhhhhhhhhhhhhhhhcCcccc-CCccc-----ccccc-cccccchhhHHHHHHHHHHHHHHHhhcccccCC
Q 041273 75 LGLSTLSTAWGTGLIIGPAVGGFLAQPAEK-YPKAF-----SKESM-FGKFPYFLPCLCMSLFAFAVTIASCWIPETLHK 147 (362)
Q Consensus 75 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~-~~~~~-----gw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 147 (362)
+++++.+....+|..+++.++..+...... ..... .++.. ...+.|+.+..+.++.+++.++..+++||+|++
T Consensus 151 ~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~ 230 (502)
T TIGR00887 151 AMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRY 230 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 999999999999999999988766431100 00000 00000 001234444477777777777777899999997
Q ss_pred CCcCCccccccchhhhhhcC---C--CCccccc--cCcccchhhhccccc---chhHHHHHH----HHHHHHHHhHHHHH
Q 041273 148 HNEDGVSLDVSCDALESACG---S--NAEFKQD--EGSEEATAKKSLMKN---WPFISSTIV----YCVFSLHDIAYTEI 213 (362)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~~~~----~~~~~~~~~~~~~~ 213 (362)
...+++++++..+.+++..+ . .++.++. +++....++++++++ ++.+...+. .+......++...+
T Consensus 231 l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~ 310 (502)
T TIGR00887 231 TADVAKDVEQAASDMSAVLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLN 310 (502)
T ss_pred HHHhCcchHHHHHHHHHHhccccccCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 43332221111221211111 0 0111100 011111245556543 222222211 11111222222223
Q ss_pred HHhHhcccccccccCCCchhhH-----------H-HHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH
Q 041273 214 FSLWAISPWKYGGLSYSTENAG-----------Q-VLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYT 281 (362)
Q Consensus 214 ~~~~~~~~~~~~~~g~s~~~~g-----------~-~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 281 (362)
.|.++.+ .|+++.+.+ . ......++.+++. ++.+++.||+|||+.+..+..+..++..++.
T Consensus 311 ~p~i~~~------~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~-~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~ 383 (502)
T TIGR00887 311 QKVILSA------IGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGY-WVTVFLVDIIGRKPIQLMGFFILTVLFFVLG 383 (502)
T ss_pred cHHHHHH------HcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhcchhHHHHHHHHHHHHHHHHH
Confidence 4444432 355443211 1 1222333444454 7889999999999998888777766655554
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhccccccC-CC--------------------C-C--------
Q 041273 282 YIAMLSGFSLALLINCASVMKNVLSVSIMTGLFLLQNRAVSQKRQG-AG--------------------F-L-------- 331 (362)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~--------------------~-~-------- 331 (362)
.............. ........+.+..+..+.+.+|.+|++..+ +. . -
T Consensus 384 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 461 (502)
T TIGR00887 384 FAYNHLSTHGFLAI--YVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGY 461 (502)
T ss_pred HHHHhcchhHHHHH--HHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccc
Confidence 43221111111111 111111223344566677788999833221 00 0 0
Q ss_pred ---CChhHHHHHHHHHHHHHHHhhccccccccCC
Q 041273 332 ---PGNQMIFFILNLVEALGVILTFKPFLIQRAT 362 (362)
Q Consensus 332 ---~g~~~~f~~~~~~~~i~~~~~~~~~l~~~~~ 362 (362)
.|...+|++.+++.+++.+.. .++||+|+
T Consensus 462 ~~~~~~~~~~~i~~~~~~~~~i~~--~~lpEt~~ 493 (502)
T TIGR00887 462 PTGIWMGHVLEIFALFMFLGILFT--LLIPETKG 493 (502)
T ss_pred cccccchHHHHHHHHHHHHHHHHh--eEeccCCC
Confidence 112457888888888876654 36788764
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-27 Score=209.94 Aligned_cols=281 Identities=16% Similarity=0.109 Sum_probs=201.9
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhh-----hHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchh
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSV-----SFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTL 75 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~ 75 (362)
+++++.|+++||+|||+++..+.++.+++..+..+.+ +++.+++.|+++|++.+...+. .+++.|++|+++|++
T Consensus 49 i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (365)
T TIGR00900 49 VLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQ 128 (365)
T ss_pred HHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 5688999999999999999999999999988888887 9999999999999999988887 999999999999999
Q ss_pred hHHHHHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHhhcccccCCCCcCCccc
Q 041273 76 GLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLHKHNEDGVSL 155 (362)
Q Consensus 76 ~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 155 (362)
++++.+....+|..+||.+++.+.+ ..|||+.+ ...++..++..+.....++++++++++++.+
T Consensus 129 ~~~~~~~~~~~g~~~g~~l~~~l~~-------~~g~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (365)
T TIGR00900 129 ANSLSQAVRSLFYIVGPGIGGLMYA-------TLGIKWAI---------WVDAVGFAISALLIVSVRIPELAASEIQALS 192 (365)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH-------HhhHHHHH---------HHHHHHHHHHHHHHHhcccccCCCccccccc
Confidence 9999999999999999999999987 77887766 4444444433333333322111111110000
Q ss_pred cccchhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHH-HHHHhHhcccccccccCCCchhh
Q 041273 156 DVSCDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYT-EIFSLWAISPWKYGGLSYSTENA 234 (362)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~s~~~~ 234 (362)
+ +..++..+..++.+|+|.++...+..++......... ...|.+..+. +|.++.+.
T Consensus 193 ~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 249 (365)
T TIGR00900 193 N------------------AVLRDTREGIKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKY-----LGRGSTHY 249 (365)
T ss_pred h------------------hHHHHHHhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----hCCchHHH
Confidence 0 0000122345567788888877777666665554444 5677776554 68899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHH
Q 041273 235 GQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMTGLF 314 (362)
Q Consensus 235 g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (362)
+......+++..+++ ++.+++.||.++++....+.....+....+.+... +.+ ...+...+.+.+.....+...
T Consensus 250 ~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~g~~~~~~~~~~~ 323 (365)
T TIGR00900 250 GWVLAAFGLGALLGA-LLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPP----NFP-LFLVLWFAIGVGYGPINVPQG 323 (365)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhch----hHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998887 88899999999999888776666665555544332 122 222333333444455567778
Q ss_pred HHHhhhccccccC
Q 041273 315 LLQNRAVSQKRQG 327 (362)
Q Consensus 315 ~~~~~~~p~~~~~ 327 (362)
.+..|..|+++.+
T Consensus 324 ~~~~~~~~~~~~g 336 (365)
T TIGR00900 324 TLLQRRVPAELLG 336 (365)
T ss_pred HHHHHhCCHHHHH
Confidence 8889988865543
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.7e-27 Score=198.58 Aligned_cols=238 Identities=16% Similarity=0.146 Sum_probs=191.6
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTL 80 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~ 80 (362)
++..+.|.++||.+.|+.+..++++.++.+++++++++.+.+.+.-+++|...|+..|. ...+++|+|++|||+..+++
T Consensus 79 ~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siW 158 (448)
T COG2271 79 VSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIW 158 (448)
T ss_pred HHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEe
Confidence 56788999999999999999999999999999999999999999999999999998666 99999999999999999999
Q ss_pred HHhhhhhhhhhhhhh--hhhcCccccCCcccccccccccccchhhHHHHHHHHHH-HHHHHhhcccccCCCCcCCccccc
Q 041273 81 STAWGTGLIIGPAVG--GFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFA-VTIASCWIPETLHKHNEDGVSLDV 157 (362)
Q Consensus 81 ~~~~~~g~~~g~~~~--~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~ 157 (362)
+.+.++|..+.|++. +++.. +.+||..| +.-++++++ .++.++..+|+|+.....+-++-
T Consensus 159 n~shNiGGal~~~~~~la~~~~-------~~~w~~~f---------~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~- 221 (448)
T COG2271 159 NTSHNIGGALAPLVALLAFFAF-------HGGWRAAF---------YFPGIIAIIVALILLFLLRDRPQSEGLPPIEEY- 221 (448)
T ss_pred hhhhhcccchHHHHHHHHHHHh-------ccchhHHH---------HHHHHHHHHHHHHHHHHhCCCccccCCCCHHHh-
Confidence 999999999999999 88877 77898887 555555554 56666778887765432211110
Q ss_pred cchhhhhhcCCCCcc-ccccC----cccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCch
Q 041273 158 SCDALESACGSNAEF-KQDEG----SEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTE 232 (362)
Q Consensus 158 ~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ 232 (362)
.+++.+. +++++ .....-.+.+++||.+|.+.+.+.+....-++...+.|+|+.+. .|+|..
T Consensus 222 --------~~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~-----k~~s~~ 288 (448)
T COG2271 222 --------RGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEV-----KGFSLV 288 (448)
T ss_pred --------hcCchhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh-----cCCCHH
Confidence 0000000 11111 11123445678999999999999999999999999999999887 799999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhh--chhHHHHHHH
Q 041273 233 NAGQVLAISGFSLLVFQLTLYPYVERMI--GPIIITRIAG 270 (362)
Q Consensus 233 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~--g~~~~~~~~~ 270 (362)
+++...+.+-.+++.++ ++.|+++||. |||....+..
T Consensus 289 ~a~~a~~lfE~agl~G~-Ll~GwlSDklfkgrR~p~~~i~ 327 (448)
T COG2271 289 KANWAISLFEVAGLPGT-LLAGWLSDKLFKGRRGPMALIF 327 (448)
T ss_pred HHHHHHHHHHHHhhHHH-HHHHHHHHHhcccccchHHHHH
Confidence 99999999999999998 9999999996 5665544333
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-26 Score=211.40 Aligned_cols=231 Identities=16% Similarity=0.141 Sum_probs=171.1
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTL 80 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~ 80 (362)
+++++.|+++||+|||+++.++.++.+++.+++++++|++.+++.|++.|++.|...+. .+++.|++|+|+|++++++.
T Consensus 73 ~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~ 152 (434)
T PRK11663 73 VSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIW 152 (434)
T ss_pred HHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999988877677 99999999999999999999
Q ss_pred HHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHH-HHHHHhhcccccCCCCcCCccccccc
Q 041273 81 STAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFA-VTIASCWIPETLHKHNEDGVSLDVSC 159 (362)
Q Consensus 81 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~ 159 (362)
+...++|..++|.+++++.+ .+|||+.| .+.+++.++ .++..+.+||++++....+.++. ..
T Consensus 153 ~~~~~~g~~~~~~~~~~l~~-------~~gw~~~f---------~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~ 215 (434)
T PRK11663 153 NTAHNVGGALIPLVVGAIAL-------HYGWRYGM---------MIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEW-RH 215 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------cccHHHHH---------HHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccc-cc
Confidence 99999999999999999987 78888877 555554443 33444567776543211111000 00
Q ss_pred hhhhhhcCCCCccccccCcccchhh-hcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHH
Q 041273 160 DALESACGSNAEFKQDEGSEEATAK-KSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVL 238 (362)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~ 238 (362)
+. + +..++. +.++.+..+.. ...+|++.++...+..++..........++|.|+.+. +|++..+.+...
T Consensus 216 ~~-~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~g~s~~~a~~~~ 285 (434)
T PRK11663 216 DA-L---ELAQQQ-EGAGLSRKEILTKYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSET-----LGVDLVTANSAV 285 (434)
T ss_pred cc-c---ccchhc-cccCCChhhhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cCCCHHHHHHHH
Confidence 00 0 000000 00000011111 2256788888777766666666666677888887554 689999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 041273 239 AISGFSLLVFQLTLYPYVERMI 260 (362)
Q Consensus 239 ~~~~~~~~~~~~~~~~~l~~~~ 260 (362)
+...+++.+++ ++.+++.||+
T Consensus 286 ~~~~~~~~~g~-~~~g~l~dr~ 306 (434)
T PRK11663 286 SMFELGGFIGA-LVAGWGSDKL 306 (434)
T ss_pred HHHHHHHHHHH-HHHhhhHHHh
Confidence 99999999998 9999999998
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.2e-27 Score=217.40 Aligned_cols=325 Identities=18% Similarity=0.177 Sum_probs=210.1
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTL 80 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~ 80 (362)
+++++.|+++||+|||++++++.++.+++.++.++++|++.+++.|++.|++.+...+. .+++.|++|+++|+++.++.
T Consensus 142 ~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~ 221 (505)
T TIGR00898 142 LGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLI 221 (505)
T ss_pred HHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999987777 99999999999999999999
Q ss_pred HHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHhhcccccCCCCcCCcccc--cc
Q 041273 81 STAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLHKHNEDGVSLD--VS 158 (362)
Q Consensus 81 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~--~~ 158 (362)
..+..+|.+++|.++..+.+ ||+.+ ++.++..++..+..+++||++++...+++.++ +.
T Consensus 222 ~~~~~~g~~~~~~~~~~~~~----------wr~~~---------~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~ 282 (505)
T TIGR00898 222 QVFFSLGLVLLPLVAYFIPD----------WRWLQ---------LAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKI 282 (505)
T ss_pred HHHHHHHHHHHHHHHHHhhH----------HHHHH---------HHHHHHHHHHHHHHHhcCCChHHHHHCCCHHHHHHH
Confidence 99999999999988766542 66655 55666666656666889999876433332221 11
Q ss_pred chhhhhhcCCCCcc-------ccc-cCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCC
Q 041273 159 CDALESACGSNAEF-------KQD-EGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYS 230 (362)
Q Consensus 159 ~~~~~~~~~~~~~~-------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s 230 (362)
.+...+..+..... +++ +++..+.+.++++|+|+++...+......+.........+.+.. .++.+
T Consensus 283 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 356 (505)
T TIGR00898 283 LQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLG------NLGGN 356 (505)
T ss_pred HHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhcccc------ccCCC
Confidence 11111111110000 000 00111235677888988877766654433332222112222221 13444
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhh
Q 041273 231 TENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIM 310 (362)
Q Consensus 231 ~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (362)
... .....++..+++. ++.+++.||+|||+.+..+.++.+++.+.+.+..... .+. ......+..++....+
T Consensus 357 ~~~---~~~~~~~~~i~~~-~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~ 428 (505)
T TIGR00898 357 IYL---DLFISGLVELPAK-LITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDL---YFL-RTALAVLGKFGITSAF 428 (505)
T ss_pred hHH---HHHHHHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCc---hHH-HHHHHHHHHHHHHHHH
Confidence 332 2334455566665 7789999999999999988888777766655543221 111 1122222222334455
Q ss_pred hHHHHHHhhhccccccCCCC-------------CC--------ChhHHHHHHHHHHHHHHHhhccccccccC
Q 041273 311 TGLFLLQNRAVSQKRQGAGF-------------LP--------GNQMIFFILNLVEALGVILTFKPFLIQRA 361 (362)
Q Consensus 311 ~~~~~~~~~~~p~~~~~~~~-------------~~--------g~~~~f~~~~~~~~i~~~~~~~~~l~~~~ 361 (362)
+..+.+.+|.+|+...+... .+ +...++.+.+++.+++.++.+ ++||++
T Consensus 429 ~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~lpet~ 498 (505)
T TIGR00898 429 QMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVYLGEKWLFLPLVLFGGLALLAGILTL--FLPETK 498 (505)
T ss_pred HHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--cCcCCC
Confidence 77788889999954332111 00 235677777777777766654 467665
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=210.93 Aligned_cols=242 Identities=18% Similarity=0.217 Sum_probs=173.6
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTL 80 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~ 80 (362)
+++++.|+++||+|||+++..+.+..+++.++++++++++.+++.|+++|++.+...+. ..++.|++|+|+|++++++.
T Consensus 68 l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~ 147 (426)
T PRK12307 68 FGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFL 147 (426)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHH
Confidence 57889999999999999999999999999999999999999999999999998887777 99999999999999999999
Q ss_pred HHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHhhcccccCCCCcCCccccccch
Q 041273 81 STAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLHKHNEDGVSLDVSCD 160 (362)
Q Consensus 81 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 160 (362)
..+.++|.++++.+.+.+.+ ..|||+.| ++.....++.+......||++++++++.++++
T Consensus 148 ~~~~~lg~~~~~~l~~~l~~-------~~~w~~~f---------~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~---- 207 (426)
T PRK12307 148 VSGFGIGNIIAAYFMPSFAE-------AYGWRAAF---------FVGLLPVLLVIYIRARAPESKEWEEAKLSGKG---- 207 (426)
T ss_pred HHHHhHHHHHHHHHHHHHcc-------cCCHHHHH---------HHHHHHHHHHHHHHHHCCCChHHHHhhhhccc----
Confidence 99999999999999998887 78888776 33332222222222334544322111000000
Q ss_pred hhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHH---HHHhHHHHHHHhHhcccccccccCCCchhhHHH
Q 041273 161 ALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFS---LHDIAYTEIFSLWAISPWKYGGLSYSTENAGQV 237 (362)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~ 237 (362)
+.++...+....+.++.+|++.++.......... .........+|.|+.+ .|+++.+.+.+
T Consensus 208 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~ 271 (426)
T PRK12307 208 ----------KHSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAG------EGFDTGVVSNL 271 (426)
T ss_pred ----------cccccchhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHH
Confidence 0000001111234567788887765443332222 2222344566766654 47888899998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHH
Q 041273 238 LAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSY 280 (362)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~ 280 (362)
....+++.++++ ++.+++.||+++|+....+..+..+..+.+
T Consensus 272 ~~~~~~~~~~g~-~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~ 313 (426)
T PRK12307 272 MTAAAFGTVLGN-IVWGLCADRIGLKKTFSIGLLMSFLFIFPL 313 (426)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 898899999988 899999999999998887777665554433
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.2e-27 Score=209.27 Aligned_cols=275 Identities=14% Similarity=0.102 Sum_probs=189.6
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTL 80 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~ 80 (362)
+++++.|+++||+|||+++..+.++.+++.+.+++++|++.+++.|++.|++.+...+. ...+.|++| |+|+++++..
T Consensus 53 ~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 131 (377)
T TIGR00890 53 MSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGII 131 (377)
T ss_pred HHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999998876665 778888886 6799999999
Q ss_pred HHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHH-HHHhhcccccCCCCcCCccccccc
Q 041273 81 STAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVT-IASCWIPETLHKHNEDGVSLDVSC 159 (362)
Q Consensus 81 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~ 159 (362)
..+.++|..+++.+.+.+.+ ..|||+.| .+.++..++.. ...+.+||+++++++++++.+
T Consensus 132 ~~~~~~g~~~~~~~~~~~~~-------~~~~~~~f---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 192 (377)
T TIGR00890 132 IGGYGLGSFILSPLITSVIN-------LEGVPAAF---------IYMGIIFLLVIVLGAFLIGYPPGQLIKTNIEVS--- 192 (377)
T ss_pred HHhcchhHhHHHHHHHHHHh-------cccHHHHH---------HHHHHHHHHHHHHHHHheecCchhccccCcccc---
Confidence 99999998887777766666 67887776 55555555433 333445543322111110000
Q ss_pred hhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHHH
Q 041273 160 DALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLA 239 (362)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~ 239 (362)
+...+.++.+|+++++...+..++............+.|.++ ++.++.+.+.+..
T Consensus 193 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 247 (377)
T TIGR00890 193 -------------------VKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQS------LGLSDGFLVLAVS 247 (377)
T ss_pred -------------------hhhhhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHHH------cCCCHHHHHHHHH
Confidence 011234567788888776666555544444444445544332 5778888899899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhh
Q 041273 240 ISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMTGLFLLQNR 319 (362)
Q Consensus 240 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (362)
..++...+++ +..+++.||++||+.+..+.....++.+.+.+.+... .+. ........+.......+....+.+|
T Consensus 248 ~~~~~~~~~~-~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~g~~~g~~~~~~~~~~~~ 322 (377)
T TIGR00890 248 ISSIFNGGGR-PFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLN---DVL-FLATVALVFFTWGGTISLFPSLVSD 322 (377)
T ss_pred HHHHHHHHHH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccch---hHH-HHHHHHHHHHHhccchhccHHHHHH
Confidence 9999999988 8999999999999998888877777666554433211 111 1111111122222333455667788
Q ss_pred hcccccc
Q 041273 320 AVSQKRQ 326 (362)
Q Consensus 320 ~~p~~~~ 326 (362)
..|+++.
T Consensus 323 ~~~~~~~ 329 (377)
T TIGR00890 323 IFGPANS 329 (377)
T ss_pred Hhhhhhh
Confidence 8875544
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-26 Score=205.50 Aligned_cols=231 Identities=20% Similarity=0.269 Sum_probs=177.0
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTL 80 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~ 80 (362)
+++++.|+++||+|||+++..+.++.+++..++.++++++.+++.|+++|++.+...+. .+++.|++|+|+|++++++.
T Consensus 41 ~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (377)
T PRK11102 41 IGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFV 120 (377)
T ss_pred HHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 56889999999999999999999999999999999999999999999999998887777 99999999999999999999
Q ss_pred HHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHH-HHHHhhcccccCCCCcCCccccccc
Q 041273 81 STAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAV-TIASCWIPETLHKHNEDGVSLDVSC 159 (362)
Q Consensus 81 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~ 159 (362)
+....+|..++|.+++.+.+ ..|||+.| .+.+.+.++. +...+.+||+++++++++.+.+
T Consensus 121 ~~~~~~g~~~~~~~~~~l~~-------~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 181 (377)
T PRK11102 121 TLVMTIAPLLAPIIGGWLLV-------WFSWHAIF---------WVLALAAILAAALVFFFIPETLPKERRQPFHLR--- 181 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HcChHHHH---------HHHHHHHHHHHHHHHHhCCccCcccccCCCChH---
Confidence 99999999999999999987 67887766 4555544443 3444567775432211110000
Q ss_pred hhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHHH
Q 041273 160 DALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLA 239 (362)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~ 239 (362)
+...+.++.+|+|+.+...+...+.......+....|.++.+. .|+++.+.|....
T Consensus 182 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~g~~~~ 237 (377)
T PRK11102 182 -------------------TTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIEL-----NGVSPQNFGYYFA 237 (377)
T ss_pred -------------------HHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH-----hCCCHHHHHHHHH
Confidence 0123455678888877666655544444444444445444443 6889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHH
Q 041273 240 ISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPL 276 (362)
Q Consensus 240 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~ 276 (362)
...+..++++ +..+++.||+|+|+.+..+.....+.
T Consensus 238 ~~~~~~~~~~-~~~g~l~~r~g~~~~~~~~~~~~~~~ 273 (377)
T PRK11102 238 LNIVFLFVMT-IINSRFVRRVGALNMLRFGLWIQFIM 273 (377)
T ss_pred HHHHHHHHHH-HHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 9999999987 88999999999999988887665443
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-26 Score=208.66 Aligned_cols=228 Identities=13% Similarity=0.094 Sum_probs=172.9
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTL 80 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~ 80 (362)
+++++.|+++||+|||+++..+..+++++.+++++++|++.+++.|+++|++.+...+. ..++.|++| |+|+++++.+
T Consensus 59 l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~ 137 (393)
T PRK09705 59 GLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLW 137 (393)
T ss_pred HHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHH
Confidence 57899999999999999999999999999999999999999999999999999987777 888999987 7899999999
Q ss_pred HHhhhhhhhhhhhhhhhhcCccccCCccc-ccccccccccchhhHHHHHHHHHHHHHHHhhcccccCCCCcCCccccccc
Q 041273 81 STAWGTGLIIGPAVGGFLAQPAEKYPKAF-SKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLHKHNEDGVSLDVSC 159 (362)
Q Consensus 81 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~-gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 159 (362)
+.+...|..+|+.+++++.+ +. +||..+ ...++..++.+...+...+++++++ + ++
T Consensus 138 ~~~~~~g~~~g~~~~~~l~~-------~~~~w~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~--- 194 (393)
T PRK09705 138 SAALMGGGGLGAAITPWLVQ-------HSETWYQTL---------AWWALPAVVALFAWWWQSAREVASS--H--KT--- 194 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------hcCCHHHHH---------HHHHHHHHHHHHHHHHHhcCCCccc--c--CC---
Confidence 99999999999999999887 43 787655 2222332222222222222111100 0 00
Q ss_pred hhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHHH
Q 041273 160 DALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLA 239 (362)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~ 239 (362)
+.+.++.+|+++.+...+...+..........+.|.++.+ .|+++.+.|...+
T Consensus 195 ---------------------~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~------~g~s~~~ag~~~~ 247 (393)
T PRK09705 195 ---------------------TTTPVRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIE------IGASAQYSGSLLA 247 (393)
T ss_pred ---------------------CcCCcccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCChhhhhHHHH
Confidence 0112344567777766666666666666667778877754 4889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH
Q 041273 240 ISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYT 281 (362)
Q Consensus 240 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 281 (362)
..+++.++++ +..+++.||.++|+....+..+..++...+.
T Consensus 248 ~~~i~~i~g~-~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~ 288 (393)
T PRK09705 248 LMTLGQAAGA-LLMPAMARHQDRRKLLMLALVLQLVGFCGFI 288 (393)
T ss_pred HHHHHHHHHH-HHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 9999999998 8899999999999988888777666655443
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.6e-27 Score=208.60 Aligned_cols=229 Identities=15% Similarity=0.222 Sum_probs=173.6
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTL 80 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~ 80 (362)
+++++.|+++||+|||+++..+..+.+++.+++++++|++.+++.|+++|++.+...+. ..++.|++|+++|+++++..
T Consensus 53 ~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (382)
T PRK10091 53 VGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGM 132 (382)
T ss_pred HHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHH
Confidence 57899999999999999999999999999999999999999999999999998887777 88899999999999999999
Q ss_pred HHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHH-HHHHhhcccccCCCCcCCccccccc
Q 041273 81 STAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAV-TIASCWIPETLHKHNEDGVSLDVSC 159 (362)
Q Consensus 81 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~ 159 (362)
..+..+|..++|.+++.+.+ ..|||+.| .+.++..++. +.....+||.+++++ .+
T Consensus 133 ~~~~~~g~~~g~~l~~~l~~-------~~gwr~~f---------~~~~~~~~~~~~~~~~~lp~~~~~~~-----~~--- 188 (382)
T PRK10091 133 VSGMTVANLLGIPLGTYLSQ-------EFSWRYTF---------LLIAVFNIAVLASIYFWVPDIRDEAK-----GG--- 188 (382)
T ss_pred HHHHHHHHHHhccHHHHHhh-------hccHHHHH---------HHHHHHHHHHHHHHHHhCCCCCcccc-----cC---
Confidence 99999999999999999987 77888777 5555544433 333456777532110 00
Q ss_pred hhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHHH
Q 041273 160 DALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLA 239 (362)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~ 239 (362)
. .+..+.+|+++.+.......+..........+.+.++.+. .|+++.+.+.+..
T Consensus 189 --------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~~~~~~ 242 (382)
T PRK10091 189 --------------------L-REQFHFLRSPAPWLIFAATMFGNAGVFAWFSYIKPYMMFI-----SGFSETSMTFIMM 242 (382)
T ss_pred --------------------H-HHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHH
Confidence 0 0112345666666554443333322223333444444433 6889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH
Q 041273 240 ISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYT 281 (362)
Q Consensus 240 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 281 (362)
..+++.++++ ++.+++.||+++++....+..+..++.+.+.
T Consensus 243 ~~~~~~~ig~-~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~ 283 (382)
T PRK10091 243 LVGLGMVLGN-LLSGRLSGRYSPLRIAAVTDFIIVLALLMLF 283 (382)
T ss_pred HHHHHHHHHh-HHHheeccccCchhHHHHHHHHHHHHHHHHH
Confidence 9999999998 8999999999999998888777666655443
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.2e-27 Score=209.88 Aligned_cols=225 Identities=13% Similarity=0.082 Sum_probs=164.9
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTL 80 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~ 80 (362)
+.+++.|+++||+|||++++.+.++.+++.+.+.++++. ++.|+++|++.+...|+ .+++.|++|+|+|++++++.
T Consensus 53 l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~ 129 (393)
T PRK11195 53 VLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWM 129 (393)
T ss_pred HHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 568999999999999999999999999998888777664 77899999999999998 99999999999999999999
Q ss_pred HHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHhhcccccCCCCcCCccccccch
Q 041273 81 STAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLHKHNEDGVSLDVSCD 160 (362)
Q Consensus 81 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 160 (362)
+...++|.++||.+++++.+ . .|+. +..+.+...++..+....+||+++++++++++.. +
T Consensus 130 ~~~~~~~~~~Gp~lgG~l~~-------~-~~~~---------~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~ 189 (393)
T PRK11195 130 EGSTIAAILLGTVLGGALAD-------P-HAEA---------ALAVCALIYLLAALFNLFIPRLGARRPGQSWNPI---A 189 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------H-HHHH---------HHHHHHHHHHHHHHHHhcCCCCcccccccCCCHH---H
Confidence 99999999999999999986 2 1322 2233333333344455677876543221111100 0
Q ss_pred hhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHHHH
Q 041273 161 ALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLAI 240 (362)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~ 240 (362)
.. ++.....+.++|+|.+........+...........++.|.++. +|.++.+.|.+...
T Consensus 190 ~~---------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----lg~s~~~~G~~~~~ 249 (393)
T PRK11195 190 LL---------------RDFFHACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVA-----LGITLNQPAYLQAV 249 (393)
T ss_pred HH---------------HHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCChhHHHHHHHH
Confidence 00 00112345667888776655554444444444555566666554 68899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhHHHHHHH
Q 041273 241 SGFSLLVFQLTLYPYVERMIGPIIITRIAG 270 (362)
Q Consensus 241 ~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~ 270 (362)
.+++.++++ +..+++.||.++++....+.
T Consensus 250 ~~~g~i~g~-~~~~~l~~~~~~~~~~~~g~ 278 (393)
T PRK11195 250 VAIGIAVGA-GAAARLVTLETVLRVLPAGI 278 (393)
T ss_pred HHHHHHHHH-HHHHHHhcCCcccchHHHHH
Confidence 999999998 88899999888887776664
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-26 Score=206.73 Aligned_cols=263 Identities=13% Similarity=0.137 Sum_probs=185.3
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTL 80 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~ 80 (362)
+++++.|+++||+|||+++..+.++.+++.+++.+++|++.+++.|+++|++.+...|. .+++.|++|+|+|++++++.
T Consensus 70 ~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~ 149 (394)
T PRK10213 70 FASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVI 149 (394)
T ss_pred HHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHH
Confidence 56889999999999999999999999999999999999999999999999999888777 99999999999999999999
Q ss_pred HHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHH-HHHhhcccccCCCCcCCccccccc
Q 041273 81 STAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVT-IASCWIPETLHKHNEDGVSLDVSC 159 (362)
Q Consensus 81 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~ 159 (362)
....++|..+||.+++.+.+ .+|||+.| .+.++++++.. ......||++++++ +
T Consensus 150 ~~~~~~g~~ig~~l~~~l~~-------~~gw~~~f---------~~~~~l~~~~~l~~~~~~p~~~~~~~------~--- 204 (394)
T PRK10213 150 FGAVSIALVIAAPLGSFLGE-------LIGWRNVF---------NAAAVMGVLCIFWIIKSLPSLPGEPS------H--- 204 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHh-------hcCHHHHH---------HHHHHHHHHHHHHHHHHCCCCCcccc------c---
Confidence 99999999999999999998 78898877 44444444332 22334566432110 0
Q ss_pred hhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHH-HhHhcccccccccCCCchhhHHHH
Q 041273 160 DALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIF-SLWAISPWKYGGLSYSTENAGQVL 238 (362)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~s~~~~g~~~ 238 (362)
...+.++.+|+|+++...+..++..........+. |.+.. . +|+++.+.+...
T Consensus 205 --------------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~-----~g~s~~~~g~~~ 258 (394)
T PRK10213 205 --------------------QKQNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMN-L-----AGFGVDGLTLVL 258 (394)
T ss_pred --------------------chhHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-----cCCChhHHHHHH
Confidence 01123457788888877665555544444444444 54543 2 688999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHH-HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 041273 239 AISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPL-LTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMTGLFLLQ 317 (362)
Q Consensus 239 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (362)
...+++..+++ ++.+++.||.++ +.+..+..+.... +++..... ..+... ....+.+.+.....+...+.+
T Consensus 259 ~~~~~~~iig~-~~~~~l~~r~~~-~~l~~~~~~~~~~~~~l~~~~~-----~~~~~~-~~~~l~G~~~~~~~~~~~~~~ 330 (394)
T PRK10213 259 LSFGIASFVGT-SLSSFILKRSVK-LALAGAPLVLAVSALVLTLWGS-----DKIVAT-GVAIIWGLTFALVPVGWSTWI 330 (394)
T ss_pred HHHHHHHHHHH-HHHHHHHhccch-hHHHHHHHHHHHHHHHHHHHhh-----hHHHHH-HHHHHHHHHHHhhhHHHHHHH
Confidence 99999999998 888999999544 4333333332222 23222221 122222 223333333444556666677
Q ss_pred hhhccc
Q 041273 318 NRAVSQ 323 (362)
Q Consensus 318 ~~~~p~ 323 (362)
++..|+
T Consensus 331 ~~~~~~ 336 (394)
T PRK10213 331 TRSLAD 336 (394)
T ss_pred HHHCcc
Confidence 777774
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.3e-28 Score=221.45 Aligned_cols=335 Identities=18% Similarity=0.134 Sum_probs=206.9
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLS---VSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGL 77 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~ 77 (362)
++++++|+++||+|||++++.+.++..++.+++.+. .+++.+++.|+++|++.+...+. .+++.|++|+++|++++
T Consensus 86 i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~ 165 (481)
T TIGR00879 86 IGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALT 165 (481)
T ss_pred HHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhh
Confidence 578999999999999999999999999999988554 35568999999999999888777 99999999999999999
Q ss_pred HHHHHhhhhhhhhhhhhh---hhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHhhcccccCCCCcCCcc
Q 041273 78 STLSTAWGTGLIIGPAVG---GFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLHKHNEDGVS 154 (362)
Q Consensus 78 ~~~~~~~~~g~~~g~~~~---~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 154 (362)
++.+.+.++|..+++.++ ....+ ..+||+.| .+.++..++.++..+++||+++....+++.
T Consensus 166 ~~~~~~~~~G~~~~~~~~~~~~~~~~-------~~~w~~~f---------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 229 (481)
T TIGR00879 166 SLYQLAITFGILVAYGFGSGKVSLNN-------TLGWRIPL---------GLQLIPAGLLFLGLFFLPESPRWLVGKGRV 229 (481)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCC-------CccHHHHH---------HHHHHHHHHHHHHHhcCCCChHHHHHcCCh
Confidence 999999999999999998 55544 67887776 555555555556667788876532211111
Q ss_pred ccccchhhhhhcCCCCccccc-------------cC---cccchhhhccccc---chhHHHHHHHHHHHHHHhHHHHHHH
Q 041273 155 LDVSCDALESACGSNAEFKQD-------------EG---SEEATAKKSLMKN---WPFISSTIVYCVFSLHDIAYTEIFS 215 (362)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~-------------~~---~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (362)
++ ..+..++..+.+++..+. ++ ........+..++ +.++...+..+...........+.|
T Consensus 230 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (481)
T TIGR00879 230 EE-ARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSP 308 (481)
T ss_pred HH-HHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHH
Confidence 11 111111110000000000 00 0000111122221 1111111111111111122233344
Q ss_pred hHhcccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhh-----h
Q 041273 216 LWAISPWKYGGLSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGF-----S 290 (362)
Q Consensus 216 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 290 (362)
.+..+ .|++..+.+.......++.++++ ++.+++.||+++|+.+..+..+..++.+.+.+....... .
T Consensus 309 ~~~~~------~g~~~~~~~~~~~~~~~~~~~~~-~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (481)
T TIGR00879 309 TIFEN------AGVSTDHAFLVSIIVGAVNFAFT-FVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSS 381 (481)
T ss_pred HHHHH------cCCCchHHHHHHHHHHHHHHHHH-HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccch
Confidence 44332 58888888888888888888887 888999999999999888877777766665532211111 0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHhhhccccccCCCC-----------------------CCChhHHHHHHHHHHHH
Q 041273 291 LALLINCASVMKNVLSVSIMTGLFLLQNRAVSQKRQGAGF-----------------------LPGNQMIFFILNLVEAL 347 (362)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-----------------------~~g~~~~f~~~~~~~~i 347 (362)
.+........+....+....+....+..|..|+++.+... ..|+..+|++.++++++
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~ 461 (481)
T TIGR00879 382 GNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVL 461 (481)
T ss_pred hHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHH
Confidence 2222222233333344444566677778888854321110 01456778888888888
Q ss_pred HHHhhccccccccC
Q 041273 348 GVILTFKPFLIQRA 361 (362)
Q Consensus 348 ~~~~~~~~~l~~~~ 361 (362)
+.+..+. +.+|+|
T Consensus 462 ~~i~~~~-~~~~~~ 474 (481)
T TIGR00879 462 GLIFVYF-FLPETK 474 (481)
T ss_pred HHHHHhe-ecccCC
Confidence 8777664 456554
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-26 Score=206.54 Aligned_cols=272 Identities=16% Similarity=0.124 Sum_probs=188.3
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTL 80 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~ 80 (362)
+++++.|+++||+|||+++..+.++..++.+++.++++++.+++.|++.|++.+...+. .+++.|++|+|+|++++++.
T Consensus 65 ~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 144 (406)
T PRK11551 65 PGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLM 144 (406)
T ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999998887777 99999999999999999999
Q ss_pred HHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHH-HHHHHhhcccccCCCCcCCccccccc
Q 041273 81 STAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFA-VTIASCWIPETLHKHNEDGVSLDVSC 159 (362)
Q Consensus 81 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~ 159 (362)
+.+..+|..+++.+++.+.+ ..+||..+ ++.+++.++ ..+...++||++++.++++++.+
T Consensus 145 ~~~~~~g~~~~~~~~~~~~~-------~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--- 205 (406)
T PRK11551 145 YCGVPFGGALASVIGVLAAG-------DAAWRHIF---------YVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQ--- 205 (406)
T ss_pred HHHHHHHHHHHHHHHHHHcc-------ccCHHHHH---------HHHHHHHHHHHHHHHHhCCCChhHHhccCcchh---
Confidence 99999999999999988877 67787666 444444333 33344567887654222111000
Q ss_pred hhhhhhcCCCCccccccCcccchhhhcccc---cchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHH
Q 041273 160 DALESACGSNAEFKQDEGSEEATAKKSLMK---NWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQ 236 (362)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~ 236 (362)
.....+..++ +++.+...+..+...........+.|.++.+ .|+++.+.+.
T Consensus 206 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~------~g~s~~~~~~ 259 (406)
T PRK11551 206 --------------------RAPVLRALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVG------QGLSRSQAGL 259 (406)
T ss_pred --------------------hhhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCCChhhhhH
Confidence 0000111111 1222333333333333344445566766644 5889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 041273 237 VLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMTGLFLL 316 (362)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (362)
.....+++.++++ ++.+++.||+++|+.+..+.....+++..+..... .+. ..+...+.+.......+....+
T Consensus 260 ~~~~~~~~~~~~~-~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~g~~~~~~~~~~~~~ 332 (406)
T PRK11551 260 VQIAFNIGGALGS-LLIGALMDRLRPRRVVLLIYAGILASLAALAAAPS-----FAG-MLLAGFAAGLFVVGGQSVLYAL 332 (406)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCc-----HHH-HHHHHHHHHHHHHhHHHHHHHH
Confidence 9999999999998 89999999999999887766655555444433221 111 1122223233334455677788
Q ss_pred Hhhhccccc
Q 041273 317 QNRAVSQKR 325 (362)
Q Consensus 317 ~~~~~p~~~ 325 (362)
..|.+|+++
T Consensus 333 ~~~~~p~~~ 341 (406)
T PRK11551 333 APLFYPTQV 341 (406)
T ss_pred HHHHcchhh
Confidence 888888544
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=213.10 Aligned_cols=248 Identities=16% Similarity=0.057 Sum_probs=173.6
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchh
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGL-----SVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTL 75 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~ 75 (362)
+++++.|+++||+|||+++..+.+++++..+..++ ++|++.+++.|+++|++.+...|. .++++|++|+++|++
T Consensus 79 ~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~ 158 (467)
T PRK09556 79 VGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGR 158 (467)
T ss_pred HHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceee
Confidence 57899999999999999999888888777766654 689999999999999998888777 999999999999999
Q ss_pred hHHHHHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHH-HHHHHhhcccccCCCCcCCcc
Q 041273 76 GLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFA-VTIASCWIPETLHKHNEDGVS 154 (362)
Q Consensus 76 ~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~ 154 (362)
++++.+.+.++|.++++.+..++.+... ..+||..| .+.+++.++ .++..+..+|+|++.+..+++
T Consensus 159 a~gi~~~~~~lG~~l~~~i~~~~~~~~~----~~~~~~~f---------~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~ 225 (467)
T PRK09556 159 FLGFWNISHNLGGAGAGGVALWGANYFF----DGHVIGMF---------IFPSIIALIIGFIGLRYGSDSPEELGWGKAE 225 (467)
T ss_pred eEEeeecccchhhhHHHHHHHHHHHhhc----cCcchhHH---------HHHHHHHHHHHHHHHHhCCCChhhcCCCChh
Confidence 9999999999999999998877665100 11466554 444444443 333344456654432211111
Q ss_pred ccccchhhhhhcCCCCccccccCcccchh-hhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchh
Q 041273 155 LDVSCDALESACGSNAEFKQDEGSEEATA-KKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTEN 233 (362)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~ 233 (362)
+. . ++....+++.+++++....+. .++.+|+|.++...+..++......+...+.|.|+.+. +|+|+.+
T Consensus 226 ~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~-----~g~s~~~ 295 (467)
T PRK09556 226 EI-F----GEPISEEDKETESTDMTKWQIFVEYVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQE-----LGFSKED 295 (467)
T ss_pred hc-c----cCccchhhhccccccCcHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----cCCCHHH
Confidence 00 0 000000000000000001111 23368899999888888777777677777889888765 7999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHH
Q 041273 234 AGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLS 273 (362)
Q Consensus 234 ~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~ 273 (362)
.+.......++..+++ ++.++++||+++|+.........
T Consensus 296 a~~~~~~~~~~~~ig~-~~~G~lsDr~g~r~~~~~~~~~~ 334 (467)
T PRK09556 296 AINTFTLFEIGALVGS-LLWGWLSDLANGRRALVACIALA 334 (467)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHCCCchHHHHHHHH
Confidence 9999888888888887 99999999999988765544333
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.3e-26 Score=203.76 Aligned_cols=238 Identities=19% Similarity=0.155 Sum_probs=182.8
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTL 80 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~ 80 (362)
+++++.|+++||+|||+++..+....+++...+.++++++.+++.|+++|++.+...+. .+++.|.+|+++|.+++++.
T Consensus 63 ~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 142 (406)
T PRK15402 63 FLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALM 142 (406)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999998887777 99999999999999999999
Q ss_pred HHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHH-HHhhcccccCCCCcCCccccccc
Q 041273 81 STAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTI-ASCWIPETLHKHNEDGVSLDVSC 159 (362)
Q Consensus 81 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~ 159 (362)
.....+|..+||.+++.+.+ ..+||+.+ ++.++..++..+ .....||++++.+++.+.
T Consensus 143 ~~~~~~~~~~g~~i~~~l~~-------~~~w~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 201 (406)
T PRK15402 143 ANVALLAPLLGPLVGAALIH-------VLPWRGMF---------VLFAALAALSFFGLWRAMPETAGRVGEKLSL----- 201 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------ccCccHHH---------HHHHHHHHHHHHHHHHhCCCCCccccccccH-----
Confidence 98889999999999999987 77888776 444444444333 334567654322111000
Q ss_pred hhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHHH
Q 041273 160 DALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLA 239 (362)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~ 239 (362)
++...+.++.+|||+++...+...+.......+....|.++.+. +|+++.+.+....
T Consensus 202 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-----~g~~~~~~g~~~~ 258 (406)
T PRK15402 202 ------------------KELGRDYKLVLKNRRFVAGALALGLVSLPLLAWIALSPVILISG-----EQLSSYEYGLLQV 258 (406)
T ss_pred ------------------HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----hCCCHHHHHHHHH
Confidence 01223456788999888877766665555555555667666544 6889999888877
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHH
Q 041273 240 ISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIA 284 (362)
Q Consensus 240 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 284 (362)
....+..++. ++.+++.||+++|+.+..+.....++...+....
T Consensus 259 ~~~~~~~~g~-~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~ 302 (406)
T PRK15402 259 PVFGALIAGN-LTLARLTSRRPLRSLIRMGLWPMVAGLLLAALAT 302 (406)
T ss_pred HHHHHHHHHH-HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777776 8899999999999998888877777666655443
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-26 Score=213.20 Aligned_cols=257 Identities=16% Similarity=0.203 Sum_probs=191.8
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTL 80 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~ 80 (362)
++.++.|+++||+|||+++..+.++.+++.+++++++|++.+++.|+++|++.+...+. .+++.|++|+|+|++++++.
T Consensus 52 ~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 131 (485)
T TIGR00711 52 ISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIW 131 (485)
T ss_pred HHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999888777 99999999999999999999
Q ss_pred HHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHH-HHHHHhhcccccCCCCcCCcccccc-
Q 041273 81 STAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFA-VTIASCWIPETLHKHNEDGVSLDVS- 158 (362)
Q Consensus 81 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~- 158 (362)
.....+|..+||.+++++.+ +.|||+.| ++...++++ ..+..+..||+++.++++.+.....
T Consensus 132 ~~~~~~g~~~g~~~~~~l~~-------~~~w~~~f---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l 195 (485)
T TIGR00711 132 GLTVLVAPALGPTLGGWIIE-------NYHWRWIF---------LINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLL 195 (485)
T ss_pred HHHHHHHhhhhhccHhHhcc-------CcCceehh---------hhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHH
Confidence 99999999999999999998 78998877 444444433 2333455666443222111110000
Q ss_pred --------chhhhhhcCCCCcccc--------------------ccCcccchhhhcccccchhHHHHHHHHHHHHHHhHH
Q 041273 159 --------CDALESACGSNAEFKQ--------------------DEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAY 210 (362)
Q Consensus 159 --------~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (362)
....++..+ ++..++ +.+++.+....+.+|+|+++...+..++........
T Consensus 196 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (485)
T TIGR00711 196 LSVGLGSLLYGLSEGPE-RGWFDSNEILILSITGLVAIIAFVVWELTDDNPLVDLRLFKYRNFTIGCVYMSLLGLGLYGS 274 (485)
T ss_pred HHHHHHHHHHHHhhCCC-CCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCCccCHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence 000001000 010000 001111222345788898888877777777777777
Q ss_pred HHHHHhHhcccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH
Q 041273 211 TEIFSLWAISPWKYGGLSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYT 281 (362)
Q Consensus 211 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 281 (362)
..++|.|+.+. +|+++.+.|.......++..+++ ++.+++.||+++|+.+..+..+..++...+.
T Consensus 275 ~~~~p~~~~~~-----~g~s~~~~g~~~~~~~~~~~~~~-~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~ 339 (485)
T TIGR00711 275 FYLLPLYLQQV-----LGYTALQAGLHILPVGLAPMLSS-PIAGRMGDKIDPRKLVTIGLILYAVGFYWRA 339 (485)
T ss_pred HHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHhhcCcHHHHHHHHHHHHHHHHHHh
Confidence 77888888765 78999999999999999999987 8999999999999998888877777666554
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.2e-26 Score=204.54 Aligned_cols=285 Identities=15% Similarity=0.075 Sum_probs=191.8
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHH--------HHHHHHHHHhhhcCcchhH-HHHHHhhhcccc
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFW--------MAIATRFLLGALNGLLGPI-KAYACEILRDQH 72 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~ 72 (362)
+++++.|+++||+|||+++..+.++..++..+++++++++ .+++.|+++|++.+...+. ..++.|++|+|+
T Consensus 50 i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~ 129 (394)
T TIGR00883 50 LGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK 129 (394)
T ss_pred hHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc
Confidence 5789999999999999999999999999999999998875 4788999999998887777 999999999999
Q ss_pred chhhHHHHHHhhhhhhhhhhhhhhhhcCcccc-CCcccccccccccccchhhHHHHHHHHHHHHHHHhhcccccCCCCcC
Q 041273 73 KTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEK-YPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLHKHNED 151 (362)
Q Consensus 73 r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~-~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 151 (362)
|++..+..+.+..+|..+++.++..+....++ .....+||..+ .+.++..++........||++++++++
T Consensus 130 r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (394)
T TIGR00883 130 RGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPF---------LVSAVLVLIGLYLRRNLEETPVFEKAQ 200 (394)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHH---------HHHHHHHHHHHHHHHhcCCChhHHHHH
Confidence 99999999999999999999988776431110 00134565544 555555444444445566654332211
Q ss_pred CccccccchhhhhhcCCCCccccccCcccchhhhcccccch--hHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCC
Q 041273 152 GVSLDVSCDALESACGSNAEFKQDEGSEEATAKKSLMKNWP--FISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSY 229 (362)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 229 (362)
+++++ ...+.++.+++++ ++......++..........+.|.|..+. +|.
T Consensus 201 ~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~ 252 (394)
T TIGR00883 201 EKHKK-----------------------KRGPIRETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQT-----LGL 252 (394)
T ss_pred hcccc-----------------------ccCCHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCC
Confidence 11100 1123344555554 55555555555555555666777777554 688
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHH-HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 041273 230 STENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLL-TSYTYIAMLSGFSLALLINCASVMKNVLSVS 308 (362)
Q Consensus 230 s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (362)
++.+.+.......+...+++ ++.+++.||+++|+.+.....+..+.. .......... ..+. ........+.....
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~-~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~g~~~~~ 328 (394)
T TIGR00883 253 SANSALLVLMLSLILFFITI-PLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSG--SFTL-FFFLVLGLALIGGM 328 (394)
T ss_pred ChhHHHHHHHHHHHHHHHHH-HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCC--chHH-HHHHHHHHHHHHHH
Confidence 88999998888888888887 889999999999997765544433322 2222121111 1121 12222233334444
Q ss_pred hhhHHHHHHhhhccccccC
Q 041273 309 IMTGLFLLQNRAVSQKRQG 327 (362)
Q Consensus 309 ~~~~~~~~~~~~~p~~~~~ 327 (362)
..+.......|.+|+++.+
T Consensus 329 ~~~~~~~~~~~~~p~~~~~ 347 (394)
T TIGR00883 329 YTGPMGSFLPELFPTEVRY 347 (394)
T ss_pred HhhhHHHHHHHhCCcccee
Confidence 5577788999999965443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=208.55 Aligned_cols=298 Identities=13% Similarity=0.162 Sum_probs=190.8
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTL 80 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~ 80 (362)
+++++.|+++||+|||+++..+.++.+++.+++.++++++.+++.|++.|++.+...+. .+++.|++|+++|++++++.
T Consensus 62 ~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 141 (405)
T TIGR00891 62 FGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLL 141 (405)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHH
Confidence 57899999999999999999999999999999999999999999999999998888777 99999999999999999999
Q ss_pred HHhhhhhhhhhhhhhhhhcCccccCCcccc--cccccccccchhhHHHHHHHHHHHHHHHhhcccccCCCCcCCcccccc
Q 041273 81 STAWGTGLIIGPAVGGFLAQPAEKYPKAFS--KESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLHKHNEDGVSLDVS 158 (362)
Q Consensus 81 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~g--w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 158 (362)
+.+..+|..+++.+++.+.+ ..+ ||+.+ .+.++..++.++.....||+++++++++++++ .
T Consensus 142 ~~~~~~g~~~~~~l~~~l~~-------~~~~~w~~~f---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 204 (405)
T TIGR00891 142 ISGYAVGAVVAAQVYSLVVP-------VWGDGWRALF---------FISILPIIFALWLRKNIPEAEDWKEKHAGKAL-V 204 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------hcCccHHHHH---------HHHHHHHHHHHHHHHhCCCChhHHHHhhhhhh-h
Confidence 99999999999999999886 444 77666 44445444455555667886543222111111 1
Q ss_pred chhhhhhcCCCCccccccCcccchhhhccccc-ch-hHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHH
Q 041273 159 CDALESACGSNAEFKQDEGSEEATAKKSLMKN-WP-FISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQ 236 (362)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~ 236 (362)
.+..++..+.++..+.. .++.....++..++ +. +..........+........++|.|+.+. +|+++.+.+.
T Consensus 205 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~~~ 278 (405)
T TIGR00891 205 RTMVDILYGGEHRIANI-VMTLAAAMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKAD-----LGLSPHTVAN 278 (405)
T ss_pred hhHHHHHhccchhhhhh-hhhhhHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH-----hCCCHHHHHH
Confidence 11111111100000000 00000111111111 11 22222223333333334445667676554 6899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 041273 237 VLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMTGLFLL 316 (362)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (362)
+....+++.++++ ++.+++.||+++|+.+..+.....+........ .. ..+. ..+...+.+.......+....+
T Consensus 279 ~~~~~~~~~~~g~-~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~ 352 (405)
T TIGR00891 279 IVVFSNIGAIVGG-CVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAI--GA--NVAV-LGLGLFFQQMLVQGIWGILPKH 352 (405)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHh--CC--chHH-HHHHHHHHHHHHccchhhHHHH
Confidence 9999999999998 899999999999998877766543322221111 11 1111 1122122223334445566778
Q ss_pred HhhhccccccCC
Q 041273 317 QNRAVSQKRQGA 328 (362)
Q Consensus 317 ~~~~~p~~~~~~ 328 (362)
++|..|+++.+.
T Consensus 353 ~~~~~~~~~~~~ 364 (405)
T TIGR00891 353 LGEYFPTDQRAA 364 (405)
T ss_pred HhhhCCcchhHH
Confidence 888888655433
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.7e-26 Score=207.14 Aligned_cols=329 Identities=12% Similarity=0.042 Sum_probs=203.6
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhh
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSV----SFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLG 76 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~----~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~ 76 (362)
+++++.|+++||+|||++++.+.++.+++.+.+++.+ +++.+++.|++.|++.+...+. ...+.|++|+|+|+++
T Consensus 78 ~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~ 157 (452)
T PRK11273 78 FSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGI 157 (452)
T ss_pred HHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHH
Confidence 5789999999999999999999999999998888763 7888999999999998887665 8889999999999999
Q ss_pred HHHHHHhhhhhhh-hhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHH-HHHHHhhcccccCCCCcCCcc
Q 041273 77 LSTLSTAWGTGLI-IGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFA-VTIASCWIPETLHKHNEDGVS 154 (362)
Q Consensus 77 ~~~~~~~~~~g~~-~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~ 154 (362)
+++++.+.++|.. .+|+++..+.. ..|||+.| ++.+++.++ .++..+++||++++...++++
T Consensus 158 ~~~~~~~~~~g~~~~~~l~~~~~~~-------~~gw~~~f---------~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 221 (452)
T PRK11273 158 VSVWNCAHNVGGGLPPLLFLLGMAW-------FNDWHAAL---------YMPAFAAILVALFAFAMMRDTPQSCGLPPIE 221 (452)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHH-------hccHHHHH---------HHHHHHHHHHHHHHHHHccCCHhhcCCCChh
Confidence 9999999999864 45655444433 34787766 454444444 445556778876542211111
Q ss_pred ccccchhhhhhcCCCCccccccCcccchh-hhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchh
Q 041273 155 LDVSCDALESACGSNAEFKQDEGSEEATA-KKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTEN 233 (362)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~ 233 (362)
+. ++..+.+.+.+++++.+..+. .+..+|++.++...+..++..........++|.|+.+. .|++..+
T Consensus 222 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~-----~g~s~~~ 290 (452)
T PRK11273 222 EY------KNDYPDDYNEKHEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEV-----KHFALDK 290 (452)
T ss_pred hh------hhccccccccccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHH
Confidence 00 000000000000011111111 23467888888888877777766677777899998765 6888888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhh--chhHHHH-HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhh
Q 041273 234 AGQVLAISGFSLLVFQLTLYPYVERMI--GPIIITR-IAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIM 310 (362)
Q Consensus 234 ~g~~~~~~~~~~~~~~~~~~~~l~~~~--g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (362)
.+.......++..++. ++.++++||+ +||.... ....+..++.+.+. ..... ..+... +.....+.......
T Consensus 291 ~~~~~~~~~~~~~~g~-~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~-~~~~~--~~~~~~-~~~~~~g~~~~~~~ 365 (452)
T PRK11273 291 SSWAYFLYEYAGIPGT-LLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYW-LNPAG--NPTVDM-ACMIVIGFLIYGPV 365 (452)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHH-Hhccc--ChHHHH-HHHHHHHHHHHhHH
Confidence 8888888888888887 8899999998 4444322 22222222222221 11111 111111 11111111111112
Q ss_pred hHHHHHHhhhccccccCC-------------CC-CC----------ChhHHHHHHHHHHHHHHHhhccccccccCC
Q 041273 311 TGLFLLQNRAVSQKRQGA-------------GF-LP----------GNQMIFFILNLVEALGVILTFKPFLIQRAT 362 (362)
Q Consensus 311 ~~~~~~~~~~~p~~~~~~-------------~~-~~----------g~~~~f~~~~~~~~i~~~~~~~~~l~~~~~ 362 (362)
.....+..|..|+++.+. .. .+ |++..|++.+++++++.+........|+|+
T Consensus 366 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 441 (452)
T PRK11273 366 MLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRH 441 (452)
T ss_pred HHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhccccch
Confidence 223345567777433211 11 01 577888888888888877776555666653
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.9e-27 Score=216.26 Aligned_cols=340 Identities=15% Similarity=0.082 Sum_probs=200.8
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhh------------hhHHHHHHHHHHHhhhcCcchhH-HHHHHhhh
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLS------------VSFWMAIATRFLLGALNGLLGPI-KAYACEIL 68 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~------------~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~ 68 (362)
++++++|+++||+|||++++.+.++..++.+.++++ ++++.+++.|+++|++.|...+. .++++|++
T Consensus 70 ~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~ 149 (479)
T PRK10077 70 IGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIA 149 (479)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhC
Confidence 678999999999999999999999999988877763 23567889999999999988777 99999999
Q ss_pred ccccchhhHHHHHHhhhhhhhhhhhhhhhhcCcccc-CCcccccccccccccchhhHHHHHHHHHHHHHHHhhcccccCC
Q 041273 69 RDQHKTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEK-YPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLHK 147 (362)
Q Consensus 69 ~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~-~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 147 (362)
|+|+|+++++..+.+..+|..+++.+++.+.+..++ ..+..|||+.| ++.++..++..+..+++||++++
T Consensus 150 ~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f---------~~~~~~~~~~~~~~~~l~~s~~~ 220 (479)
T PRK10077 150 PAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMF---------ASEAIPALLFLMLLYFVPETPRY 220 (479)
T ss_pred ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHH---------HHHHHHHHHHHHHHHcCCCCcHH
Confidence 999999999999999999999998888766532111 11246777766 55556655555556778998765
Q ss_pred CCcCCccccccchhhhhhcCCCCcccc--ccCccc---chhhhcccccchhHHHHHHHHHHHHHHh----HHHHHHHhHh
Q 041273 148 HNEDGVSLDVSCDALESACGSNAEFKQ--DEGSEE---ATAKKSLMKNWPFISSTIVYCVFSLHDI----AYTEIFSLWA 218 (362)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 218 (362)
...++++++ ..+..++..+.++..+. +.++.. ....+..+.. .............+... ....+.|.+.
T Consensus 221 l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~ 298 (479)
T PRK10077 221 LMSRGKQEQ-AEGILRKIMGNTLATQALQEIKHSLDHGRKTGGKLLMF-GVGVIVIGVMLSVFQQFVGINVVLYYAPEIF 298 (479)
T ss_pred HHHcCCHHH-HHHHHHHHcCChhHHHHHHHHHHHHHHhhhhhhhhcch-hHHHHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 322221111 11111111110000000 000000 0000001100 00000000001111111 1111223332
Q ss_pred cccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 041273 219 ISPWKYGGLSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCA 298 (362)
Q Consensus 219 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (362)
. +.|.+....+......++...++. ++.+++.||+|||+.+..+..+..++.+.+...........+. ....
T Consensus 299 ~------~~g~~~~~~~~~~~~~~~~~~i~~-~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~-~~~~ 370 (479)
T PRK10077 299 K------TLGASTDIALLQTIIVGVINLTFT-VLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVA-LLSM 370 (479)
T ss_pred H------HcCCCCchHHHHHHHHHHHHHHHH-HHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHH-HHHH
Confidence 2 257777766777777778888887 8999999999999999999988888776665443222111121 1111
Q ss_pred HHHHHHHHHHhhhHHHHHHhhhccccccCCC--------------------------C---CCChhHHHHHHHHHHHHHH
Q 041273 299 SVMKNVLSVSIMTGLFLLQNRAVSQKRQGAG--------------------------F---LPGNQMIFFILNLVEALGV 349 (362)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~--------------------------~---~~g~~~~f~~~~~~~~i~~ 349 (362)
..+....+....|..+.+++|.+|+++.+.. + ..|....|++.+++++++.
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (479)
T PRK10077 371 LFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAA 450 (479)
T ss_pred HHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHH
Confidence 2221222222346778889999884322100 0 0133456777777777776
Q ss_pred HhhccccccccC
Q 041273 350 ILTFKPFLIQRA 361 (362)
Q Consensus 350 ~~~~~~~l~~~~ 361 (362)
++.+. +.+|+|
T Consensus 451 ~~~~~-~~~e~~ 461 (479)
T PRK10077 451 LFMWK-FVPETK 461 (479)
T ss_pred HHHHh-ccccCC
Confidence 66554 566655
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-25 Score=200.97 Aligned_cols=298 Identities=15% Similarity=0.159 Sum_probs=196.8
Q ss_pred cccchhhhhhcccCCchHHH-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhh--H
Q 041273 2 LTSVLWGMVADRCGRKPVII-IGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLG--L 77 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~-~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~--~ 77 (362)
+.+++.|+++||+||||.++ .+.....++..++++++|++.+++.|++.|.+.+...|. .++..|..|+++|.++ .
T Consensus 48 ~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 127 (375)
T TIGR00899 48 AVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFS 127 (375)
T ss_pred HHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHH
Confidence 45789999999999988765 456666677788899999999999999998877777777 8889999888877755 5
Q ss_pred HHHHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHH-HHHhhcccccCCCCcCCcccc
Q 041273 78 STLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVT-IASCWIPETLHKHNEDGVSLD 156 (362)
Q Consensus 78 ~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~ 156 (362)
+......++|..+||.+++.+.+ ..|||+.| ++.++..++.. +..+.+||+++++++++ .+
T Consensus 128 ~~~~~~~~~g~~ig~~~~~~l~~-------~~~~~~~f---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 189 (375)
T TIGR00899 128 SVMRAQISLAWVIGPPLAFWLAL-------GFGFTVMF---------LTAALAFVLCGVLVWLFLPSYPRGAPGAL--TR 189 (375)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHH-------hcccHHHH---------HHHHHHHHHHHHHHHHhCCCcccCccccc--Cc
Confidence 78888899999999999999987 77888776 55555554433 33455787654321110 00
Q ss_pred ccchhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHH
Q 041273 157 VSCDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQ 236 (362)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~ 236 (362)
.+.++.+++++++......++...........+|.|+.+. +|.++.+.+.
T Consensus 190 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~g~ 239 (375)
T TIGR00899 190 -------------------------LEVRGLLASRDTRLLFVACTLMWGCNILYIINMPLLIIHE-----LGLPDKLAGL 239 (375)
T ss_pred -------------------------chhhhhhcCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHH-----cCCCHHHHHH
Confidence 1122355667666555544444443344444567666544 6888999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 041273 237 VLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMTGLFLL 316 (362)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (362)
+.........++. ++.+++.||+++|+.+..+.....+....+...++ .+... ....+.+.+.....+....+
T Consensus 240 ~~~~~~~~~~~~~-~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~g~~~g~~~~~~~~~ 312 (375)
T TIGR00899 240 MMGTAAGLEIPFM-LLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNS-----LWALL-MLQLLNAIFIGILAGIGMLY 312 (375)
T ss_pred HHHHHHHHHHHHH-HhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHH-----HHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 8877766667666 88899999999999887766654444333322221 12111 22222222333344666677
Q ss_pred HhhhccccccCCCC----------------------CCChhHHHHHHHHHHHHHHHhhcc
Q 041273 317 QNRAVSQKRQGAGF----------------------LPGNQMIFFILNLVEALGVILTFK 354 (362)
Q Consensus 317 ~~~~~p~~~~~~~~----------------------~~g~~~~f~~~~~~~~i~~~~~~~ 354 (362)
..|..|+++..... ..|++..|++.+++.+++.++..+
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 372 (375)
T TIGR00899 313 FQDLMPGRAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLL 372 (375)
T ss_pred HHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhe
Confidence 78888855431100 015677888888888777766543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.2e-26 Score=205.17 Aligned_cols=248 Identities=10% Similarity=-0.000 Sum_probs=177.7
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTL 80 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~ 80 (362)
+++++.|+++||+|||+++..+.++.+++..++++++|++.+++.|+++|++.+...|. ..++.|++|+++|+++++++
T Consensus 58 ~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~ 137 (412)
T TIGR02332 58 ICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALF 137 (412)
T ss_pred HHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999988888 88999999999999999999
Q ss_pred HHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHH-HHHHHhhcccccCCCCcCCccccc-c
Q 041273 81 STAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFA-VTIASCWIPETLHKHNEDGVSLDV-S 158 (362)
Q Consensus 81 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~-~ 158 (362)
+.+.++|..+++.+++++.+.. +..+..|||+.| .+.++.+++ ..+..+++||+|++.+...+++++ .
T Consensus 138 ~~~~~~g~~~~~~~~~~l~~~~-~~~~~~gwr~~f---------~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~ 207 (412)
T TIGR02332 138 MIAMPVTMALGLILSGYILALD-GLMALKGWQWLF---------LLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKAL 207 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC-CCCCccchhHHH---------HHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHH
Confidence 9999999999999999886410 011146898887 555555544 344556778887542211111110 1
Q ss_pred chhhhhhcCCCCcccc---ccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhH
Q 041273 159 CDALESACGSNAEFKQ---DEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAG 235 (362)
Q Consensus 159 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g 235 (362)
.+..++.....++.++ +++......+++++ ++.++...+.+++..........++|.++.+. +.+.++.+.+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~----~~~~s~~~~~ 282 (412)
T TIGR02332 208 KEMIDNDQLTLEQPEGAFAHAAMPQRSMLREIF-TPAIMLYTLAYFCLTNTLSAINIWTPQILQSF----NQGSSNIMIG 282 (412)
T ss_pred HHHHHhccccccccccccccccccHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCCcHHHhH
Confidence 1111111000000000 00011112233343 57777777777777777777778889888652 1467788889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhHH
Q 041273 236 QVLAISGFSLLVFQLTLYPYVERMIGPIII 265 (362)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~ 265 (362)
.......++..++. ++.++++||+++|+.
T Consensus 283 ~~~~~~~l~~~~g~-l~~g~l~dr~~~r~~ 311 (412)
T TIGR02332 283 LLAAIPQFCTIFGM-IWWSRHSDRLKERKH 311 (412)
T ss_pred HHhhHHHHHHHHHH-HHHHHHhcccCccHH
Confidence 88899999999987 899999999987764
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-26 Score=205.94 Aligned_cols=284 Identities=23% Similarity=0.327 Sum_probs=200.9
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTL 80 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~ 80 (362)
+++++.|+++||+|||+++..+.++.+++..+..+++|.+.+++.|++.|++.+...+. .+++.|++|+|+|+++++..
T Consensus 47 ~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 126 (352)
T PF07690_consen 47 LFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGIL 126 (352)
T ss_dssp HHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccc
Confidence 56889999999999999999999999999777667788889999999999999888888 99999999999999999999
Q ss_pred HHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHH-HHhhcccccCCCCcCCccccccc
Q 041273 81 STAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTI-ASCWIPETLHKHNEDGVSLDVSC 159 (362)
Q Consensus 81 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~ 159 (362)
+...++|..++|.+++.+.+ ..|||+.+ ++.++..++..+ ...+.++++++++++++++++
T Consensus 127 ~~~~~~g~~~g~~l~~~l~~-------~~~~~~~~---------~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~-- 188 (352)
T PF07690_consen 127 SAGFSLGSILGPLLGGFLIS-------YFGWRWAF---------LISAILSLIAAILFILFLPEPPPPRERESPKESE-- 188 (352)
T ss_dssp HHHHHHHHHHHHHHHHHCCC-------HCHHCCHH---------HHHHHHHHHHHHHHHCCC---STTTT--SSTTTT--
T ss_pred cchhhhhhhcccchhhhhhh-------cccccccc---------ccccchhhhhhhhHhhhhhhcccccccccccccc--
Confidence 99999999999999999998 78888877 566666655443 335555554443332222110
Q ss_pred hhhhhhcCCCCccccccCcccch-hhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCC-chhhHHH
Q 041273 160 DALESACGSNAEFKQDEGSEEAT-AKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYS-TENAGQV 237 (362)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s-~~~~g~~ 237 (362)
++++++.. ..+...+++.++...+..+...........+.|.|+.+. +|++ ..+.+..
T Consensus 189 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~ 248 (352)
T PF07690_consen 189 ---------------SKKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLYLQEV-----LGFSGPSQAGLL 248 (352)
T ss_dssp -----------------HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHH-----HHCCTHHHHHHH
T ss_pred ---------------cccccccccccccccccchhhhhhhhhhHHHHHHHHhhcccchhhhhc-----cCCCHHHHHHHH
Confidence 00001112 256666777666445555555555566777788776555 6888 7889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 041273 238 LAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMTGLFLLQ 317 (362)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (362)
....++.+.+++ ++.+++.||+++++..........+....+.......+ ..+ ......+.+.+.....+....+.
T Consensus 249 ~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~g~~~~~~~~~~~~~~ 324 (352)
T PF07690_consen 249 FSIFGIVGIIGS-LLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSS-PVW--LIIALFLIGFGFGIVFPILFSLI 324 (352)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCH-HHH--HHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhh-HHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999987 89999999999888777766666665555444333211 111 11222333335555578888999
Q ss_pred hhhccccccC
Q 041273 318 NRAVSQKRQG 327 (362)
Q Consensus 318 ~~~~p~~~~~ 327 (362)
.+..|+++.+
T Consensus 325 ~~~~~~~~~g 334 (352)
T PF07690_consen 325 QELVPPEYRG 334 (352)
T ss_dssp HCCCHTCHHH
T ss_pred HHhCCHHHHH
Confidence 9999865543
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.9e-26 Score=202.89 Aligned_cols=276 Identities=17% Similarity=0.152 Sum_probs=200.3
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTL 80 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~ 80 (362)
+++++.|+++||+|||+++..+.++.+++.+++.++++++.+++.|++.|++.+...+. .+++.|++|+|+|+++++..
T Consensus 55 ~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (385)
T TIGR00710 55 AGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSIL 134 (385)
T ss_pred HHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999888777 99999999999999999999
Q ss_pred HHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHH-HHHHhhcccccCCCCcCCccccccc
Q 041273 81 STAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAV-TIASCWIPETLHKHNEDGVSLDVSC 159 (362)
Q Consensus 81 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~ 159 (362)
+....+|..++|.+++.+.+ ..|||..+ .+.++..++. +...+..||+++++++++ ..
T Consensus 135 ~~~~~~g~~~g~~~~~~l~~-------~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---- 193 (385)
T TIGR00710 135 MPVLALAPAVAPLLGGYILV-------WLSWHAIF---------AFLSLAGILLSALIFFILPETLPYEARIQ-IS---- 193 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HcCHHHHH---------HHHHHHHHHHHHHHHHhCCCCCCCcccCC-HH----
Confidence 99999999999999999987 67887766 4444444443 333445666543221110 00
Q ss_pred hhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHHH
Q 041273 160 DALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLA 239 (362)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~ 239 (362)
+..++.++.+|+|+++...+................|.++.+. +|+++.+.+.+..
T Consensus 194 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~g~~~~ 249 (385)
T TIGR00710 194 -------------------TYFETFLLLLKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDI-----MGVSPSVFGLLFA 249 (385)
T ss_pred -------------------HHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHcChHHHHHH-----cCCCHHHHHHHHH
Confidence 0223456678888888777666655555555555566666543 6889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhh
Q 041273 240 ISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMTGLFLLQNR 319 (362)
Q Consensus 240 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (362)
...++..+++ ++.+++.||+++|+....+.....++..++........ ..+........+.+.+.....+.......|
T Consensus 250 ~~~~~~~~~~-~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 327 (385)
T TIGR00710 250 LNIIAMIFGG-FLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGL-GSWAMIIGPMMFVGIGNSMISSIAMAYALE 327 (385)
T ss_pred HHHHHHHHHH-HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9899888887 89999999999999888887776666555544332111 111122222233333344445666666667
Q ss_pred hcccc
Q 041273 320 AVSQK 324 (362)
Q Consensus 320 ~~p~~ 324 (362)
..|+.
T Consensus 328 ~~~~~ 332 (385)
T TIGR00710 328 DFPHV 332 (385)
T ss_pred cCccc
Confidence 66643
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-25 Score=200.69 Aligned_cols=235 Identities=18% Similarity=0.238 Sum_probs=178.3
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTL 80 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~ 80 (362)
+++++.|+++||+|||+.++.+.++.+++..++..+++++.+++.|+++|++.+...+. .+++.|.+|+++|+++++..
T Consensus 53 ~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 132 (392)
T PRK10473 53 AAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLL 132 (392)
T ss_pred HHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999998887666 99999999999999999999
Q ss_pred HHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHH-HHHHHhhcccccCCCCcCCccccccc
Q 041273 81 STAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFA-VTIASCWIPETLHKHNEDGVSLDVSC 159 (362)
Q Consensus 81 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~ 159 (362)
+....+|..++|.+++.+.+ ..|||+.+ .+.+...++ .++....+||++++++++ +.+
T Consensus 133 ~~~~~i~~~~~~~i~~~l~~-------~~g~~~~~---------~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~--- 191 (392)
T PRK10473 133 NGITCIIPVLAPVLGHLIML-------KFPWQSLF---------YTMAAMGILVLLLSLFILKETRPARAPA--ASS--- 191 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHh-------CcChHHHH---------HHHHHHHHHHHHHHHHHcCCCCCcccCC--ccc---
Confidence 99999999999999998877 67887766 455544444 334445677764322110 000
Q ss_pred hhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHHH
Q 041273 160 DALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLA 239 (362)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~ 239 (362)
..+..++.+|+++++...+...+.......+....|.+..+. +|+++.+.+.+..
T Consensus 192 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~ 246 (392)
T PRK10473 192 --------------------KPRENSESLLNRFFLSRLVITTLSVTVILTFVNTSPVLLMEQ-----MGFSRGEYAIIMA 246 (392)
T ss_pred --------------------hHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH-----cCCCHHHHHHHHH
Confidence 112334567777776655544443333334444455555443 6889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHH
Q 041273 240 ISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYI 283 (362)
Q Consensus 240 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 283 (362)
..++..++++ +..+++.||+++|+....+..+..++...+...
T Consensus 247 ~~~~~~i~~~-~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~ 289 (392)
T PRK10473 247 LTAGVSMTVS-FSTPFALGIFKPRTLMLTSQVLFLAAGITLALS 289 (392)
T ss_pred HHHHHHHHHH-HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999987 888999999999999888887776666555443
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-25 Score=202.56 Aligned_cols=233 Identities=17% Similarity=0.144 Sum_probs=158.5
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHH--------HHHHHHHHHhhhcCcchhH-HHHHHhhhcccc
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFW--------MAIATRFLLGALNGLLGPI-KAYACEILRDQH 72 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~ 72 (362)
+++++.|+++||+|||+.++.+.++..++.++++++++++ .+++.|+++|++.+...+. ..+++|++|+|+
T Consensus 71 ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~ 150 (434)
T PRK15075 71 LGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGR 150 (434)
T ss_pred hHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCccc
Confidence 4678899999999999999999999999999999999887 4688999999999988776 999999999999
Q ss_pred chhhHHHHHHhhhhhhhhhhhhhhhhcCccccC-CcccccccccccccchhhHHHHHHHHHHHHHHHhhcccccCCCCcC
Q 041273 73 KTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKY-PKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLHKHNED 151 (362)
Q Consensus 73 r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~-~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 151 (362)
|++++++.+...++|..+++.+++.+.....+. .+.+|||+.| ++......+........||+++..+++
T Consensus 151 rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f---------~~~~~~~~~~~~~~~~~~e~~~~~~~~ 221 (434)
T PRK15075 151 KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPF---------LIGCLIVPFIFLIRRSLEETEEFLARK 221 (434)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHH---------HHHHHHHHHHHHHHHhcCCCHHHHHhh
Confidence 999999999999999988888888764311100 1156787766 333222222222222233321100000
Q ss_pred CccccccchhhhhhcCCCCccccccCcccchhhhcccccchhHHH-HHHHHHHHHHHhHHHHHHHhHhcccccccccCCC
Q 041273 152 GVSLDVSCDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISS-TIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYS 230 (362)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s 230 (362)
+ + .+.....++..++++.+.. ....++..........+.|.|+++. +|++
T Consensus 222 ~---~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~g~~ 272 (434)
T PRK15075 222 H---R---------------------PSMREIFRSLAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTV-----LHLS 272 (434)
T ss_pred h---c---------------------cccccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCC
Confidence 0 0 0001112223344433322 2222223333444555678777665 6888
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHH
Q 041273 231 TENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLS 273 (362)
Q Consensus 231 ~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~ 273 (362)
..+.+......+++..++. ++.+++.||++||+....+....
T Consensus 273 ~~~~~~~~~~~~~~~~~~~-~~~g~l~Dr~g~r~~~~~~~~~~ 314 (434)
T PRK15075 273 AADSLLVTLCVGVSNFIWL-PIGGALSDRIGRRPVLIAFTVLA 314 (434)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcchHHHHHHHHHH
Confidence 8888888888888888887 88999999999999877665443
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=5e-26 Score=203.58 Aligned_cols=234 Identities=18% Similarity=0.178 Sum_probs=174.0
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTL 80 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~ 80 (362)
+++++.|+++||+|||+++..+.++.+++.+++.++++++.+++.|++.|++.+...+. .+++.|++|+|+|++++++.
T Consensus 45 ~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 124 (379)
T TIGR00881 45 ISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFW 124 (379)
T ss_pred hhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeeh
Confidence 57899999999999999999999999999999999999999999999999999988777 99999999999999999999
Q ss_pred HHhhhhhhhhhh-hhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHH-HHHHHhhcccccCCCCcCCcccccc
Q 041273 81 STAWGTGLIIGP-AVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFA-VTIASCWIPETLHKHNEDGVSLDVS 158 (362)
Q Consensus 81 ~~~~~~g~~~g~-~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~ 158 (362)
+....+|..++| .+++.+.+ ..+||+.| .+.+++.++ .++..+..||++++++.++++++ .
T Consensus 125 ~~~~~~g~~~~~~~~~~~~~~-------~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 187 (379)
T TIGR00881 125 NCSHNVGGGLLPPLVLFGIAE-------LYSWHWVF---------IVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEM-P 187 (379)
T ss_pred hccchhHHHHHHHHHHHHHHh-------cCCchhHH---------HHHHHHHHHHHHHHheeeCCCccccccCccccC-c
Confidence 999999999999 56666666 67787766 444444443 34444566766543222111111 0
Q ss_pred chhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHH
Q 041273 159 CDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVL 238 (362)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~ 238 (362)
.+. .+.+++.++++.+..+...++.+|+|.++...+..++..........+.|.|+.+. .|+++.+.+...
T Consensus 188 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~ 258 (379)
T TIGR00881 188 NEE----PDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDWSPLYLTQE-----KGFSKEKASWAF 258 (379)
T ss_pred ccc----cccccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCHHHHHHHH
Confidence 000 00000001111112223456678889888888777777777777777888887665 688999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhch
Q 041273 239 AISGFSLLVFQLTLYPYVERMIGP 262 (362)
Q Consensus 239 ~~~~~~~~~~~~~~~~~l~~~~g~ 262 (362)
....++.++++ ++.+++.||..+
T Consensus 259 ~~~~~~~~~~~-~~~g~l~~r~~~ 281 (379)
T TIGR00881 259 TLYELGGLVGT-LLAGWLSDKLFN 281 (379)
T ss_pred HHHHHHcchhH-HHHHHHHHHHcC
Confidence 99999999987 889999998643
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=201.68 Aligned_cols=298 Identities=15% Similarity=0.162 Sum_probs=199.5
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTL 80 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~ 80 (362)
+++++.|+++||+|||+++..+.++.+++.+++.++++++.+++.|+++|++.+...+. .+++.|.+|+++|+++++..
T Consensus 57 i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~ 136 (394)
T PRK03699 57 ISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFT 136 (394)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999998877666 89999999999999999999
Q ss_pred HHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHhhcccccCCCCcCCccccccch
Q 041273 81 STAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLHKHNEDGVSLDVSCD 160 (362)
Q Consensus 81 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 160 (362)
+...++|..++|.+.+.+.+. ..|||+.| .+.+++.++..+..++ ++.|+.+++++++.+
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~------~~gw~~~f---------~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~---- 196 (394)
T PRK03699 137 DSFFSMAGMIFPIIAAYLLAR------SIEWYWVY---------ACIGLVYVAIFILTLF-SEFPALGKHAPKADK---- 196 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhc------cccHHHHH---------HHHHHHHHHHHHHHHh-cCCccccccCccccC----
Confidence 999999999999998887541 46888776 4444444433322222 222211111000000
Q ss_pred hhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHHHH
Q 041273 161 ALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLAI 240 (362)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~ 240 (362)
...++ ..++.++...+..++..........+.|.|+.+. +|+|+.+.+.+.+.
T Consensus 197 ---------------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~g~s~~~~~~~~~~ 249 (394)
T PRK03699 197 ---------------------PVAKE-KWGIGVLFLAIAALLYILAQLTFISWVPEYAQKK-----FGMSLEDAGNLVSN 249 (394)
T ss_pred ---------------------ccccc-cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCChHHhhHHHHH
Confidence 00011 1234555555555555555666777888888665 78999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhh
Q 041273 241 SGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMTGLFLLQNRA 320 (362)
Q Consensus 241 ~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (362)
..++..+++ ++.+++.||+++|+.+.....+..+.+.++....+ .. +. . ......+......++...+...+.
T Consensus 250 ~~~~~~ig~-~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~---~~-~~-~-~~~~~~G~~~~~~~~~~~~~~~~~ 322 (394)
T PRK03699 250 FWMAYMVGM-WIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDD---PS-HL-L-YAILGLGFFSSAIYTTIITLGSQQ 322 (394)
T ss_pred HHHHHHHHH-HHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCC---ch-HH-H-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889889987 88999999999999887766655554443332221 11 11 1 112222233344455555566665
Q ss_pred ccccccCCC------------C----------CCChhHHHHHHHHHHHHHHHhhc
Q 041273 321 VSQKRQGAG------------F----------LPGNQMIFFILNLVEALGVILTF 353 (362)
Q Consensus 321 ~p~~~~~~~------------~----------~~g~~~~f~~~~~~~~i~~~~~~ 353 (362)
.|+.+.... . ..|++.++++.+++..++.+.+.
T Consensus 323 ~~~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 377 (394)
T PRK03699 323 TKVASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCI 377 (394)
T ss_pred ccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHH
Confidence 553321100 0 01567788877777777755443
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-25 Score=205.66 Aligned_cols=231 Identities=13% Similarity=0.050 Sum_probs=163.4
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhHHHHHHhhhccccchhhHHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPIKAYACEILRDQHKTLGLSTLS 81 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~ 81 (362)
+++++.|+++||+|||+++..+.+..+++.++++++++++.+++.|++.|++.+...+...+++|++|+++|++++++..
T Consensus 86 ~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~rg~a~g~~~ 165 (476)
T PLN00028 86 FSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFVSCQYWMSTMFNGKIVGTANGIAA 165 (476)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHhcChhheeHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999988765555778999999999999999998
Q ss_pred HhhhhhhhhhhhhhhhhcCcccc--CCcccccccccccccchhhHHHHHHHHHHHHHHHhhcccccCCCCcCCccccccc
Q 041273 82 TAWGTGLIIGPAVGGFLAQPAEK--YPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLHKHNEDGVSLDVSC 159 (362)
Q Consensus 82 ~~~~~g~~~g~~~~~~l~~~~~~--~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 159 (362)
...++|..+++.+.+.+...... ..+..|||+.| ++.+++.++..+..+++++++++.+.+ +.+
T Consensus 166 ~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f---------~i~g~l~l~~~l~~~~~~~~~p~~~~~--~~~--- 231 (476)
T PLN00028 166 GWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAF---------FVPGLLHIIMGILVLTLGQDLPDGNYR--ELK--- 231 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHH---------HHHHHHHHHHHHHHHHHcCcCCCCchh--hHH---
Confidence 87778877777666554321000 11135788777 555555554444444444432211100 000
Q ss_pred hhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHHH
Q 041273 160 DALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLA 239 (362)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~ 239 (362)
+.. +.++++.....++.+++++++...+.+++..........+.|.|+.+. +|+++.+++.+.+
T Consensus 232 ----~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~g~s~~~a~~~~~ 295 (476)
T PLN00028 232 ----KSG-------TMPKDSFSKVLRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDR-----FGLSLETAGAIAA 295 (476)
T ss_pred ----hcC-------ccccccHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHh-----cCCCHHHHHHHHH
Confidence 000 000011123345667888887777666655555555666777776554 6899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchh
Q 041273 240 ISGFSLLVFQLTLYPYVERMIGPI 263 (362)
Q Consensus 240 ~~~~~~~~~~~~~~~~l~~~~g~~ 263 (362)
..+++..+++ ++.++++||+++|
T Consensus 296 ~~~~~~~ig~-~~~G~lsDr~~~r 318 (476)
T PLN00028 296 SFGLMNLFAR-PAGGYLSDVAARR 318 (476)
T ss_pred HHHHHHHHHH-hhhHHHHHHHHHh
Confidence 9999999998 9999999999865
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-25 Score=201.88 Aligned_cols=237 Identities=12% Similarity=0.039 Sum_probs=167.4
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhh
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLS----VSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLG 76 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~----~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~ 76 (362)
+++++.|+++||+|||+++..+.++.+++.+++.+. ++++.+.+.|++.|++.+...+. ...+.|++|+++|+++
T Consensus 76 ~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~ 155 (438)
T TIGR00712 76 FSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTI 155 (438)
T ss_pred HhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhH
Confidence 578999999999999999999999999998887764 46778889999999998887666 8899999999999999
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHH-HHHHHhhcccccCCCCcCCccc
Q 041273 77 LSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFA-VTIASCWIPETLHKHNEDGVSL 155 (362)
Q Consensus 77 ~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~ 155 (362)
+++.+...++|..++|.+.+...+. ..|||..| ++.+++.++ .+...+.+||++++.+.++.++
T Consensus 156 ~~~~~~~~~~g~~~~~~l~~~~~~~------~~~w~~~f---------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 220 (438)
T TIGR00712 156 VSIWNCAHNIGGGIPPLLVLLGMAW------FNDWHAAL---------YFPAICAIIVALFAFAMMRDTPQSCGLPPIEE 220 (438)
T ss_pred HHHHHHHHHhHhHHHHHHHHHHHHH------hhhhHHHH---------HHHHHHHHHHHHHHHHhccCCHHhcCCCCchh
Confidence 9999999999999998877754430 46788777 555555544 3445566777654321111000
Q ss_pred cccchhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhH
Q 041273 156 DVSCDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAG 235 (362)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g 235 (362)
. .+ +...+ ..+.++.+.+......+..+|++.++...+...+......+...+.|.|+.+. .|+++.+.+
T Consensus 221 ~--~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~g~s~~~~~ 290 (438)
T TIGR00712 221 Y--RN--DYPDD-YNEKAEQELTAKEIFMQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEV-----KHFALDKSS 290 (438)
T ss_pred c--cc--ccccc-cccccccccchHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHc-----cCCChhhHH
Confidence 0 00 00000 00000000000111113467888888877766666666666777888888765 688999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhH
Q 041273 236 QVLAISGFSLLVFQLTLYPYVERMIGPII 264 (362)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ 264 (362)
......++..++++ ++.+++.||+++++
T Consensus 291 ~~~~~~~~~~~ig~-~~~g~l~dr~~~~~ 318 (438)
T TIGR00712 291 WAYFLYEYAGIPGT-LLCGWMSDKVFKGN 318 (438)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHhccCc
Confidence 99999898899988 89999999996443
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.1e-26 Score=205.64 Aligned_cols=273 Identities=13% Similarity=0.066 Sum_probs=189.2
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchh
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGL-----SVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTL 75 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~ 75 (362)
+++++.|+++||+|||+++..+..+.+++...... .++++.+++.|+++|++.+...+. .+++.|+.|+++|++
T Consensus 67 ~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (417)
T PRK10489 67 IGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQ 146 (417)
T ss_pred HHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHH
Confidence 56889999999999999999988887777665432 567889999999999988877777 999999999999999
Q ss_pred hHHHHHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHhhcccccCCCCcCCccc
Q 041273 76 GLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLHKHNEDGVSL 155 (362)
Q Consensus 76 ~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 155 (362)
+.++.....++|..+||.+++.+.+ ..||++.+ .+.++..++..+....+||++++++++++..
T Consensus 147 ~~~~~~~~~~~g~~~g~~l~g~l~~-------~~~~~~~~---------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 210 (417)
T PRK10489 147 AGAITMLTVRLGSVISPALGGLLIA-------AGGVAWNY---------GLAAAGTFITLLPLLRLPALPPPPQPREHPL 210 (417)
T ss_pred HHHHHHHHHhHHHHhHHHHHHHHHH-------HHhhHHHH---------HHHHHHHHHHHHHHHhCCCCCCCCcccccch
Confidence 9999999999999999999999987 67777665 4444444444555566777543221111000
Q ss_pred cccchhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhH
Q 041273 156 DVSCDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAG 235 (362)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g 235 (362)
++..+..+..+++|.++...+..++... ......++|.|..+. +|.++.+.|
T Consensus 211 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~-----~g~~~~~~g 262 (417)
T PRK10489 211 ----------------------RSLLAGFRFLLASPVVGGIALLGGLLTM-ASAVRVLYPALADEV-----WQMGAAQIG 262 (417)
T ss_pred ----------------------HHHHHHHHHHHcChHHHHHHHHHHHHHH-HHhHHHhhHHHHHhc-----cCCChhHhH
Confidence 0112234556777777665554444332 234555677777664 688999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHH
Q 041273 236 QVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMTGLFL 315 (362)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (362)
.+.+..+++..++. ++.+++.||.++++.+..+..+..++.+.+.+.++ .+ .......+.+.+.....+....
T Consensus 263 ~~~~~~~~g~~ig~-~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~g~~~~~~~~~~~~ 335 (417)
T PRK10489 263 LLYAAVPLGAALGA-LTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPM-----WI-LAVLCLALFGYLSAISSLLQYT 335 (417)
T ss_pred HHHHHHHHHHHHHH-HHHHHhhhccCcchHHHHHHHHHHHHHHHHHccch-----HH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888 88899999877777777777666665554433221 11 1222222222333334456667
Q ss_pred HHhhhccccc
Q 041273 316 LQNRAVSQKR 325 (362)
Q Consensus 316 ~~~~~~p~~~ 325 (362)
+.++..|+++
T Consensus 336 ~~~~~~p~~~ 345 (417)
T PRK10489 336 LLQTQTPDEM 345 (417)
T ss_pred HHHhhCCHHH
Confidence 8888888543
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-25 Score=200.84 Aligned_cols=297 Identities=16% Similarity=0.150 Sum_probs=189.2
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhh--------hhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhcccc
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLS--------VSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQH 72 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~--------~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~ 72 (362)
+++++.|+++||+|||+++..+.++.+++.+.+.++ .+++.+++.|+++|++.+...+. .+++.|++|+|+
T Consensus 66 i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~ 145 (399)
T PRK05122 66 LSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH 145 (399)
T ss_pred HhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh
Confidence 578999999999999999999999888877665543 25778999999999999988777 889999999999
Q ss_pred chhhHHHHHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHhhcccccCCCCcCC
Q 041273 73 KTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLHKHNEDG 152 (362)
Q Consensus 73 r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 152 (362)
|++++++.+.....|..+||.+++.+.+ ..|||..+ ++..+..++..+.....|++++. +
T Consensus 146 r~~~~~~~~~~~~~g~~~g~~l~~~l~~-------~~g~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~---~- 205 (399)
T PRK05122 146 TGRVISWNGIATYGALAIGAPLGVLLYH-------WGGLAGLG---------LLIMLLALLGLLLARPRPAVPPV---K- 205 (399)
T ss_pred hccchhhhhhhhhHHHHHHHHHHHHHHH-------cccHHHHH---------HHHHHHHHHHHHHHhcCCCCCCC---C-
Confidence 9999999999999999999999999987 67777655 44444333322222222222110 0
Q ss_pred ccccccchhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCch
Q 041273 153 VSLDVSCDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTE 232 (362)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ 232 (362)
+++ .+.++.+|+ .+.......+..........+.+.|..+ .|+ .
T Consensus 206 -~~~-------------------------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~--~ 249 (399)
T PRK05122 206 -GER-------------------------LPFRRVLGR--VWPYGMGLALASIGFGTIATFITLYYAA------RGW--D 249 (399)
T ss_pred -ccc-------------------------hhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH------ccc--c
Confidence 000 011111221 1111122222233333444455666543 243 2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhH
Q 041273 233 NAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMTG 312 (362)
Q Consensus 233 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (362)
+.+......+++.++++ +..+++.||+++|+.+..+..+..++...+...++ .+. ..+...+.+.+....++.
T Consensus 250 ~~~~~~~~~~~~~~~~~-~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~l~G~~~~~~~~~ 322 (399)
T PRK05122 250 GAALALTLFGVAFVGAR-LLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPS-----PWM-ALIGAALTGFGFSLVFPA 322 (399)
T ss_pred cchHHHHHHHHHHHHHH-HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcc-----HHH-HHHHHHHHHHhHHHHHHH
Confidence 34556667777777777 88899999999999888877776666655544321 111 122223333333444566
Q ss_pred HHHHHhhhccccccCCCC-----------------------CCChhHHHHHHHHHHHHHHHhhccccccccC
Q 041273 313 LFLLQNRAVSQKRQGAGF-----------------------LPGNQMIFFILNLVEALGVILTFKPFLIQRA 361 (362)
Q Consensus 313 ~~~~~~~~~p~~~~~~~~-----------------------~~g~~~~f~~~~~~~~i~~~~~~~~~l~~~~ 361 (362)
......+..|+++.+... ..|++..|.+.+++.+++.+..+....+++|
T Consensus 323 ~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (399)
T PRK05122 323 LGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRRAPR 394 (399)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 566666777744332110 0167888898888888887776654444433
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.8e-25 Score=201.14 Aligned_cols=232 Identities=11% Similarity=0.111 Sum_probs=177.2
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLS--VSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLS 78 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~ 78 (362)
+++++.|+++||+|||+++..+.++.+++.+++.++ .+++.+++.|+++|++.+...|. ..++.|++|+++|+++++
T Consensus 91 ~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 170 (465)
T TIGR00894 91 IIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLG 170 (465)
T ss_pred HHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHH
Confidence 578999999999999999999999999998887554 56888999999999999998888 999999999999999999
Q ss_pred HHHHhhhhhhhhhhhhhhhhcCccccCCcc-cccccccccccchhhHHHHHHHHHHHHHHHh-hcccccCCCCcCCcccc
Q 041273 79 TLSTAWGTGLIIGPAVGGFLAQPAEKYPKA-FSKESMFGKFPYFLPCLCMSLFAFAVTIASC-WIPETLHKHNEDGVSLD 156 (362)
Q Consensus 79 ~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~-~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~ 156 (362)
+...+..+|..++|.+++.+.+ . .|||..| ++.++..++..+.++ ..+|+|+.+++.+++++
T Consensus 171 ~~~~~~~~g~~i~~~l~~~l~~-------~~~gw~~~f---------~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 234 (465)
T TIGR00894 171 MSTSGFQLGTFIFLPISGWLCE-------SWGGWPMIF---------YVFGIVGCAWSLLWFVFPADDPSIHPCISKFEK 234 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-------ccCCCCeeh---------hhhhHHHHHHHHHHHHHhcCCcccCCCCCHHHH
Confidence 9999999999999999999987 6 4888877 555666555444443 45555543222111111
Q ss_pred ccchhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHH
Q 041273 157 VSCDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQ 236 (362)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~ 236 (362)
+..++..+ ++ .++++.+.++++.++++.++...+..++.......+..++|.|+.+. +|++..+.|.
T Consensus 235 ---~~i~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~-----~g~s~~~~g~ 301 (465)
T TIGR00894 235 ---KYINSSLQ--GQ---KGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWV-----LRVSGKENGL 301 (465)
T ss_pred ---HHHHhhcc--cc---cCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCcChHHhHH
Confidence 11111100 00 00111223577889999999988888888877777788889888765 7899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchh
Q 041273 237 VLAISGFSLLVFQLTLYPYVERMIGPI 263 (362)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~l~~~~g~~ 263 (362)
..++..++..++. ++.+++.||.++|
T Consensus 302 ~~~~~~~~~~i~~-~~~g~l~d~~~~~ 327 (465)
T TIGR00894 302 LSSLPYLFAWLCS-IFAGYLADFLKSS 327 (465)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHc
Confidence 9988888888887 8899999987644
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-24 Score=196.61 Aligned_cols=286 Identities=11% Similarity=0.097 Sum_probs=194.3
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLF---GLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGL 77 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~ 77 (362)
+++++.|+++||+|||+++..+.++++++.+++ .++++++.+++.|+++|++.+...+. ..++.|..|+++|.+.+
T Consensus 76 i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~ 155 (438)
T PRK10133 76 IIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRL 155 (438)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHH
Confidence 578999999999999999999999999999876 46889999999999999999988777 89999987777777789
Q ss_pred HHHHHhhhhhhhhhhhhhhhhcCcccc---------C--CcccccccccccccchhhHHHHH-HHHHHHH-HHHhhcccc
Q 041273 78 STLSTAWGTGLIIGPAVGGFLAQPAEK---------Y--PKAFSKESMFGKFPYFLPCLCMS-LFAFAVT-IASCWIPET 144 (362)
Q Consensus 78 ~~~~~~~~~g~~~g~~~~~~l~~~~~~---------~--~~~~gw~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~e~ 144 (362)
+..+....+|..+||.+++.+.....+ . ....+||..+ -..|+.++.... +..++.+ +.....||.
T Consensus 156 s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~-~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~ 234 (438)
T PRK10133 156 NLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSL-VLSVQTPYMIIVAIVLLVALLIMLTKFPAL 234 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 999999999999999998876521000 0 0012565543 223444443222 2222222 222334542
Q ss_pred cCCCCcCCccccccchhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccc
Q 041273 145 LHKHNEDGVSLDVSCDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKY 224 (362)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (362)
++++++ +.+ +.+...+.++++|+|+++...+..++......+...+.+.|+.+
T Consensus 235 ~~~~~~---~~~--------------------~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~---- 287 (438)
T PRK10133 235 QSDNHS---DAK--------------------QGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVE---- 287 (438)
T ss_pred Cccccc---ccc--------------------ccchhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh----
Confidence 211100 000 00012345677889988877666666666656555666666422
Q ss_pred cccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 041273 225 GGLSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNV 304 (362)
Q Consensus 225 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (362)
+.+|+++.+.+..+....++..+++ +..+++.||+++|+.+..+..+..+.+.+..+... .. . .....+.++
T Consensus 288 ~~~g~s~~~ag~~~~~~~~~~~vG~-~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~---~~-~---~~~~~l~gl 359 (438)
T PRK10133 288 EIPGMTAGFAANYLTGTMVCFFIGR-FTGTWLISRFAPHKVLAAYALIAMALCLISAFAGG---HV-G---LIALTLCSA 359 (438)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCC---hH-H---HHHHHHHHH
Confidence 1269999999999999999999998 99999999999999988887666555444333221 11 1 122333444
Q ss_pred HHHHhhhHHHHHHhhhccc
Q 041273 305 LSVSIMTGLFLLQNRAVSQ 323 (362)
Q Consensus 305 ~~~~~~~~~~~~~~~~~p~ 323 (362)
+....+|..++...+..|+
T Consensus 360 g~~~i~P~~~s~a~~~~~~ 378 (438)
T PRK10133 360 FMSIQYPTIFSLGIKNLGQ 378 (438)
T ss_pred HHHHHHHHHHHHHHcccch
Confidence 5666778888888888775
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.3e-25 Score=196.78 Aligned_cols=254 Identities=11% Similarity=0.076 Sum_probs=177.5
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHhhhcCcchhHHHHHHhhhccccchhhHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSV-SFWMAIATRFLLGALNGLLGPIKAYACEILRDQHKTLGLSTL 80 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 80 (362)
+++++.|+++||+|||+.+.++.++.+++.+++++++ +++.+++.|+++|++.+...+..++++|++|+|+|++++++.
T Consensus 52 ~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 131 (366)
T TIGR00886 52 VLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGGSFASCMPWISFFFPKKIQGTALGLA 131 (366)
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhchhhHhHHHHHHHhcCHhhhhHHHHHH
Confidence 5789999999999999999999999999999999999 999999999999998766555589999999999999999999
Q ss_pred HHhhhhhhhhhhhhhhhhcCccc---cCCcccccccccccccchhhHHHHHHHHHHHHHHHhhcccccCCCCcCCccccc
Q 041273 81 STAWGTGLIIGPAVGGFLAQPAE---KYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLHKHNEDGVSLDV 157 (362)
Q Consensus 81 ~~~~~~g~~~g~~~~~~l~~~~~---~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 157 (362)
....++|..+++.+++.+.+... +.+...+||+.+ +. .......+..++.....+|++++++++++...
T Consensus 132 ~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 203 (366)
T TIGR00886 132 AGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAF----VI---VPAGILLLPALLIFFVGADTPPGKPATGKLSF- 203 (366)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchh----HH---HHHHHHHHHHHHHHHhcccCCcccccchhccc-
Confidence 98888888888877776654110 011245777655 11 11122222233444455665543221111000
Q ss_pred cchhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHH
Q 041273 158 SCDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQV 237 (362)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~ 237 (362)
.+ +. ...+++..++.++.+++|+++...+...+..........+.|.|+.+. +|+++.+.+.+
T Consensus 204 -~~----------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~ 266 (366)
T TIGR00886 204 -KG----------AR-WSVGTGALGDQLKVFRDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQ-----FGLSKVTAGAY 266 (366)
T ss_pred -cc----------cc-ccccchhHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCcHHHHHHH
Confidence 00 00 000011112456678888888777776666666666777788887665 78899999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH
Q 041273 238 LAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYT 281 (362)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 281 (362)
.....+..++++ ++.+++.||+++|+....+......+..++.
T Consensus 267 ~~~~~~~~~~~~-~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~ 309 (366)
T TIGR00886 267 ASLGGLLGSLAR-PLGGAISDRLGGARKLLMSFLGVAMGAFLVV 309 (366)
T ss_pred HHHHHHHHHHHh-hccchHHHhhccchhHHHHHHHHHHHHHHHH
Confidence 888888888887 8999999999998887777666555544443
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-24 Score=199.28 Aligned_cols=297 Identities=13% Similarity=0.121 Sum_probs=200.5
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTL 80 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~ 80 (362)
+++++.|+++||+|||++++.+..+.+++.+.+.++++++.+++.|+++|++.+...|. .+++.|.+|+++|+++++..
T Consensus 60 ~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (471)
T PRK10504 60 VMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFV 139 (471)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999988877 99999999999999999999
Q ss_pred HHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHH-HHHhhcccccCCCCcCCccccccc
Q 041273 81 STAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVT-IASCWIPETLHKHNEDGVSLDVSC 159 (362)
Q Consensus 81 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~ 159 (362)
....++|..+||.+++.+.+ ..|||+.| .+......+.. ......|+++.... +.+......
T Consensus 140 ~~~~~~g~~~g~~~~g~l~~-------~~gw~~~f---------~~~~~~~~l~~~~~~~~~~~~~~~~~-r~~~~~~~~ 202 (471)
T PRK10504 140 TLPGQVGPLLGPALGGLLVE-------YASWHWIF---------LINIPVGIIGAIATLMLMPNYTMQTR-RFDLSGFLL 202 (471)
T ss_pred HHHHHHHHHhhhHHHHHHHh-------hccHHHHH---------HHHHHHHHHHHHHHHHhCCCccccCC-CCChHHHHH
Confidence 99999999999999999998 78888877 44444433333 33334454332211 111100000
Q ss_pred hh-------hhhhcCCCCccc--------------------cccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHH
Q 041273 160 DA-------LESACGSNAEFK--------------------QDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTE 212 (362)
Q Consensus 160 ~~-------~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (362)
.. .....+....+. +++++..+....+++|||++.......++..........
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 282 (471)
T PRK10504 203 LAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNNRALFSLKLFRTRTFSLGLAGSFAGRIGSGMLPF 282 (471)
T ss_pred HHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHhcccchHHHHHHHHHHHHHHHHHHH
Confidence 00 000000000000 000111112223578999998887777776666666666
Q ss_pred HHHhHhcccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 041273 213 IFSLWAISPWKYGGLSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLA 292 (362)
Q Consensus 213 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (362)
+.|+|.++. .|.++.+.++......++..+.. ++.+++.||+|+|+.+..+..+..+...++.+..... +.+
T Consensus 283 ~~~~~~~~~-----~g~~~~~~g~~~~~~~~~~~~~~-~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 354 (471)
T PRK10504 283 MTPVFLQIG-----LGFSPFHAGLMMIPMVLGSMGMK-RIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLG--WYY 354 (471)
T ss_pred HHHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccc--cHH
Confidence 778777654 68899999998888888877776 8889999999999999888887776655554432211 111
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhhhcccc
Q 041273 293 LLINCASVMKNVLSVSIMTGLFLLQNRAVSQK 324 (362)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 324 (362)
... ......+.+....++..+.+..+..|++
T Consensus 355 ~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 385 (471)
T PRK10504 355 LLP-FVLFLQGMVNSTRFSSMNTLTLKDLPDN 385 (471)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 111 1222222233334455667777777743
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-24 Score=193.61 Aligned_cols=308 Identities=14% Similarity=0.159 Sum_probs=197.1
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHh---h-hhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhh
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFG---L-SVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLG 76 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~---~-~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~ 76 (362)
+++++.|+++||+|||+++..+..+.+++..++. + .++++.+++.|+++|++.+...+. .+.+.|.+|+|+|+++
T Consensus 63 i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~ 142 (402)
T TIGR00897 63 ISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSA 142 (402)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHH
Confidence 5689999999999999999999999988876553 3 357888899999999988776666 8889999999999999
Q ss_pred HHHHHHhhhhhh-hhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHhhcccccCCCCcCCccc
Q 041273 77 LSTLSTAWGTGL-IIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLHKHNEDGVSL 155 (362)
Q Consensus 77 ~~~~~~~~~~g~-~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 155 (362)
+|+.+...++|. .++|.+++.+.+ ..||+..+ |..... ..+...+..+..+|.+++++++ ++.
T Consensus 143 ~g~~~~~~~~g~~~~g~~~~~~l~~-------~~g~~~~~----~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~ 206 (402)
T TIGR00897 143 VGWFWAVYSIGIGVFGSYYSSYAIP-------AFGEMNTL----WSALAF----VLTGGVIALFSNKDIFTPQHMQ-TRE 206 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc-------ccchHHHH----HHHHHH----HHHHHHHHHhccCCCCCccccc-CCc
Confidence 999999999996 689999998887 66765443 221111 1111222233344432211110 000
Q ss_pred cccchhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhH
Q 041273 156 DVSCDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAG 235 (362)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g 235 (362)
+ .++..+..++++|+|+++...+..++..........+.|.|..+ +|+++.+.+
T Consensus 207 ~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~------~g~s~~~~~ 260 (402)
T TIGR00897 207 K--------------------FSELGKAATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVAE------LGFSTSEWL 260 (402)
T ss_pred c--------------------hhhHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCChhHHH
Confidence 0 00112345567899999888777777666667777788877644 588999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhHHHH-HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHH
Q 041273 236 QVLAISGFSLLVFQLTLYPYVERMIGPIIITR-IAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMTGLF 314 (362)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (362)
.+.....++..+++ +..+++.||+++|+... .+.....+....+...........+... +.....+.+.....+. .
T Consensus 261 ~~~~~~~~~~~ig~-~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~G~~~~~~~~~-~ 337 (402)
T TIGR00897 261 QIWGTFFFTNIVFN-VIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVAL-IIAIALGIFLAGYVPL-A 337 (402)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHH-HHHHHHHHHHHHHHHH-H
Confidence 88888889999998 88899999999888754 2233333322222222211101111111 1122212222223333 4
Q ss_pred HHHhhhccccccCCCC----------------------CCChhHHHHHHHHHHHHHHHhhcc
Q 041273 315 LLQNRAVSQKRQGAGF----------------------LPGNQMIFFILNLVEALGVILTFK 354 (362)
Q Consensus 315 ~~~~~~~p~~~~~~~~----------------------~~g~~~~f~~~~~~~~i~~~~~~~ 354 (362)
....+..|++|....- ..|+..+|++.+++.+++.++..+
T Consensus 338 ~~~~~~~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 338 AVFPTLAPKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred HHHHhhCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 4556666654431110 016778888888888887776654
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-24 Score=194.14 Aligned_cols=295 Identities=12% Similarity=0.090 Sum_probs=198.0
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTL 80 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~ 80 (362)
+++++.|+++||+|||+++..+.++.+++...+++++|++.+++.|+++|++.+...|. .+.+.|..++++|+++++..
T Consensus 56 ~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (381)
T PRK03633 56 VGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAY 135 (381)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999998887776 78888999999999999999
Q ss_pred HHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHhhcccccCCCCcCCccccccch
Q 041273 81 STAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLHKHNEDGVSLDVSCD 160 (362)
Q Consensus 81 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 160 (362)
+...++|..+||.+++.+.+ ...|+.. |. ........+ ...+.+.+++.+ + + +
T Consensus 136 ~~~~~~g~~~g~~~~~~l~~-------~~~~~~~-----~~-----~~~~~~~~~-~~~~~~~~~~~~-~-~---~---- 188 (381)
T PRK03633 136 MMVYYLGTVLGQLLVSKVST-------ELMSVLP-----WV-----TGLVLAAIL-PLLFTRILNQQA-E-N---H---- 188 (381)
T ss_pred HHHHHHHHHHHHHHHhcccc-------cccchHH-----HH-----HHHHHHHHH-HHHHhcccCCCC-C-C---C----
Confidence 99999999999999999876 2222111 11 111111111 111112111110 0 0 0
Q ss_pred hhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHHHH
Q 041273 161 ALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLAI 240 (362)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~ 240 (362)
...+.++.+|+|.++......+...........++|.|..+ .|.++.+.|.+.+.
T Consensus 189 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~------~g~s~~~~g~~~~~ 243 (381)
T PRK03633 189 -------------------DSTSIWPMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNH------QGMSDASIGFWMAL 243 (381)
T ss_pred -------------------CCCCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHH
Confidence 01123445677776654443333333444455567877654 48888899999998
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhh
Q 041273 241 SGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMTGLFLLQNRA 320 (362)
Q Consensus 241 ~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (362)
..+..++++ +..+++.||+++|+.+..+.....++...+. .. . .... ...+.+.......|.......|.
T Consensus 244 ~~~~~~~~~-~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~~-~--~~~~----~~~l~g~~~~~~~p~~~~~~~~~ 313 (381)
T PRK03633 244 LVSAGILGQ-WPIGRLADRFGRLLVLRVQVFVVILGSIAML--SQ-A--AMAP----ALFILGAAGFTLYPVAMAWACEK 313 (381)
T ss_pred HHHHHHHHH-hhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--hh-H--HHHH----HHHHHHHHHHhHHHHHHHHHHcc
Confidence 889999988 8889999999999988877776666544332 11 1 1111 11112223345567778888887
Q ss_pred ccccccCCCC-----------------------CCChhHHHHHHHHHHHHHHHhhcccccc
Q 041273 321 VSQKRQGAGF-----------------------LPGNQMIFFILNLVEALGVILTFKPFLI 358 (362)
Q Consensus 321 ~p~~~~~~~~-----------------------~~g~~~~f~~~~~~~~i~~~~~~~~~l~ 358 (362)
.|+++.++.. ..|++..|.+.+.+.+++.+..++...+
T Consensus 314 ~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~ 374 (381)
T PRK03633 314 VEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLLRKAGH 374 (381)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccCC
Confidence 7754422110 0146778888888888877766654333
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.9e-24 Score=193.05 Aligned_cols=268 Identities=13% Similarity=0.157 Sum_probs=183.5
Q ss_pred ccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHHH
Q 041273 3 TSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTLS 81 (362)
Q Consensus 3 ~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~~ 81 (362)
.+++.|+++||+|||+++..+..+.+++.+.+.++++++.+++.|+++|++.+...|. .+++.|++|+|+|++++++..
T Consensus 62 ~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 141 (400)
T PRK11646 62 LGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLM 141 (400)
T ss_pred HHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4688999999999999999999999999999999999999999999999998887777 999999999999999999999
Q ss_pred HhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHH-HHHHhhcccccCCCCcCCccccccch
Q 041273 82 TAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAV-TIASCWIPETLHKHNEDGVSLDVSCD 160 (362)
Q Consensus 82 ~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~ 160 (362)
...++|..+||.+++++.+ .|||+.| ++.+...++. ++..+..||.++. + ++.+
T Consensus 142 ~~~~~g~~ig~~l~g~l~~--------~g~~~~f---------~~~~~~~~~~~i~~~~~~~~~~~~---~-~~~~---- 196 (400)
T PRK11646 142 MQDSAGAVIGALLGSWLLQ--------YDFRLVC---------ATGAVLFVLAAAFNAWLLPAYKLS---T-VRTP---- 196 (400)
T ss_pred HHHHHHHHHHHHHHHHHHH--------hhHHHHH---------HHHHHHHHHHHHHHHHhCCccccc---c-cchh----
Confidence 9999999999999999874 5777666 4444443332 2333445553211 0 0000
Q ss_pred hhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHHHH
Q 041273 161 ALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLAI 240 (362)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~ 240 (362)
..++.++.+|+|+++...+..............++|.|.++. +.++.+.+.+.+.
T Consensus 197 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~------~~~~~~~g~l~~~ 251 (400)
T PRK11646 197 -------------------VREGMTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIMVNDI------AGSPSAVKWMYAI 251 (400)
T ss_pred -------------------hHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHhhhhhHHhh------cCCchHHHHHHHH
Confidence 123455677888877655544443333333344567766543 4467888888888
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhh
Q 041273 241 SGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMTGLFLLQNRA 320 (362)
Q Consensus 241 ~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (362)
.++.......+..++..||.+.++.+..+..+..++...+...+. .+... ........+.....|...++..+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~-~~~~l~~~g~~~~~p~~~~~~~~~ 325 (400)
T PRK11646 252 EACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSN-----LQQLF-TLICLFYIGSIIAEPARETLSASL 325 (400)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhh-----HHHHH-HHHHHHHHHHHHHHccHHHHHHhc
Confidence 777776665456666667777666666666666665554443332 11111 111222223344557778888888
Q ss_pred cccccc
Q 041273 321 VSQKRQ 326 (362)
Q Consensus 321 ~p~~~~ 326 (362)
.|+++.
T Consensus 326 ~p~~~~ 331 (400)
T PRK11646 326 ADARAR 331 (400)
T ss_pred CCcccc
Confidence 885444
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-24 Score=194.79 Aligned_cols=302 Identities=21% Similarity=0.324 Sum_probs=196.7
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTL 80 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~ 80 (362)
+++++.|+++||+|||+++..+.+..+++..++.++++++.+++.|++.|++.+.. +. .+++.|.+|+++|+++++..
T Consensus 69 ~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 147 (408)
T PRK09874 69 IASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGGFV-PNANALIATQVPRNKSGWALGTL 147 (408)
T ss_pred HHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhH-HhHHHHHHHhcCHhhhhHHHHHH
Confidence 46789999999999999999999999999999999999999999999999976654 55 88899999999999999999
Q ss_pred HHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHH-HHHHhhcccccCCCCcCCccccccc
Q 041273 81 STAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAV-TIASCWIPETLHKHNEDGVSLDVSC 159 (362)
Q Consensus 81 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~ 159 (362)
.....+|..++|.+++.+.+ ..+||..| .+.++..++. +...+..||++++.++++ ..
T Consensus 148 ~~~~~~g~~~~~~~~~~l~~-------~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--- 206 (408)
T PRK09874 148 STGGVSGALLGPLAGGLLAD-------SYGLRPVF---------FITASVLFLCFLVTLFCIRENFQPVSKKE--ML--- 206 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HhCHHHHH---------HHHHHHHHHHHHHHHHHhccCcccccchh--hh---
Confidence 99999999999999999987 67887766 4444444443 333445666432211110 00
Q ss_pred hhhhhhcCCCCccccccCcccchhhhcccccchhHHHH-HHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHH
Q 041273 160 DALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISST-IVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVL 238 (362)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~ 238 (362)
..++..+.+++++++... ................++.|..+.. ++.+......+.+.
T Consensus 207 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~ 264 (408)
T PRK09874 207 --------------------HMREVVTSLKNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELA--GNVSNIAFISGMIA 264 (408)
T ss_pred --------------------HHHHHHHhCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccchHHHHHHHHHH
Confidence 011223445666665433 2223333333334445565654420 00000112345556
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHh
Q 041273 239 AISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMTGLFLLQN 318 (362)
Q Consensus 239 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (362)
...+++..++. +..+++.||+++|+.+..+.....+..+...+... .+. ..+...+.+.+.....+.......
T Consensus 265 ~~~~l~~~~~~-~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~g~~~~~~~~~~~~~~~ 337 (408)
T PRK09874 265 SVPGVAALLSA-PRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQT-----PLQ-LGILRFLLGAADGALLPAVQTLLV 337 (408)
T ss_pred HHHHHHHHHHH-HHHHHHHhccccchhHHHHHHHHHHHHHHHHHhcc-----HHH-HHHHHHHHHhhhHhhHHHHHHHHH
Confidence 66677777776 78899999999999988877766655544433321 111 122222333344445566677777
Q ss_pred hhccccccCCCCC-----------------------CChhHHHHHHHHHHHHHHHhhcc
Q 041273 319 RAVSQKRQGAGFL-----------------------PGNQMIFFILNLVEALGVILTFK 354 (362)
Q Consensus 319 ~~~p~~~~~~~~~-----------------------~g~~~~f~~~~~~~~i~~~~~~~ 354 (362)
+..|+++.+..+. .|++..|.+.+++.+++.+..++
T Consensus 338 ~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 338 YNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred HhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 7666443322211 15788999999888888877654
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-24 Score=192.79 Aligned_cols=301 Identities=15% Similarity=0.164 Sum_probs=207.4
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTL 80 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~ 80 (362)
+++++.|+++||+|||++++.+.+..+++.++..++++++.+++.|.+.|.+.+...+. .++..|..|+++|++++++.
T Consensus 58 ~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 137 (395)
T PRK10054 58 VFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLN 137 (395)
T ss_pred HHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999888877777777 99999999999999999999
Q ss_pred HHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHH-HHHhhcccccCCCCcCCccccccc
Q 041273 81 STAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVT-IASCWIPETLHKHNEDGVSLDVSC 159 (362)
Q Consensus 81 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~ 159 (362)
....++|..+||.+++++.+ .+|+..| ...++..++.. ...+.+||++++++++ + +
T Consensus 138 ~~~~~lg~~igp~l~~~l~~--------~g~~~~f---------~~~~~~~~i~~i~~~~~~~~~~~~~~~~--~-~--- 194 (395)
T PRK10054 138 YTMLNIGWTVGPPLGTLLVM--------QSINLPF---------WLAAICSAFPLVFIQIWVQRSEKAIATE--T-G--- 194 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------hccCcHH---------HHHHHHHHHHHHHHHHHHhccccccccc--h-h---
Confidence 99999999999999998864 4677666 44444444433 3334466554321110 0 0
Q ss_pred hhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHHH
Q 041273 160 DALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLA 239 (362)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~ 239 (362)
...+.++.+|||+++...+..++.......+....+.|.... .+.+.+....+....
T Consensus 195 --------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~ 251 (395)
T PRK10054 195 --------------------SVWSPSVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVV---ADSDFAEKVVAVVLP 251 (395)
T ss_pred --------------------hhhhhhhhccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHh---cccchHHHHHHHHHH
Confidence 011235678889888877776665555444444555554332 224667777788888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhh
Q 041273 240 ISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMTGLFLLQNR 319 (362)
Q Consensus 240 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (362)
..++.....+ +..+++.||.++|+.+..+..+..++...+.+.. . ..+. ..+.....+.+.....|....++.+
T Consensus 252 ~~~~~~~~~~-~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~--~~~~-~~~~~~~~~~g~~~~~p~~~~~~~~ 325 (395)
T PRK10054 252 VNAAMVVSLQ-YSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSG--N--SLLL-WGMSAAVFTVGEIIYAPGEYMLIDH 325 (395)
T ss_pred hhhhheeeeh-hHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcc--h--HHHH-HHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 8877777776 7778889999999988888777666665554321 1 1111 1122233333444556777788888
Q ss_pred hccccccCCCCCC----------------------ChhHHHHHHHHHHHHHHHhhcc
Q 041273 320 AVSQKRQGAGFLP----------------------GNQMIFFILNLVEALGVILTFK 354 (362)
Q Consensus 320 ~~p~~~~~~~~~~----------------------g~~~~f~~~~~~~~i~~~~~~~ 354 (362)
..|+++.+..+.. |+...|++.+++..++.++..+
T Consensus 326 ~~p~~~~~~~~~~~~~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 382 (395)
T PRK10054 326 IAPPGMKASYFSAQSLGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLMLK 382 (395)
T ss_pred hCCcccceehHhHHHHHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHh
Confidence 8886554433210 4566677777777666666554
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.1e-24 Score=194.91 Aligned_cols=307 Identities=12% Similarity=0.168 Sum_probs=198.0
Q ss_pred ccchhhhhhccc-----CCchH-HHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhcccc
Q 041273 3 TSVLWGMVADRC-----GRKPV-IIIGCITVVIFNTLFGLS---VSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQH 72 (362)
Q Consensus 3 ~~~~~G~l~Dr~-----Grr~~-l~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~ 72 (362)
+++++|+++||+ ||||. ++.+.+..+++...+++. ++++.+.+.+++.|++.+...+. .+++.|++|+||
T Consensus 61 ~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~ 140 (491)
T PRK11010 61 FKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE 140 (491)
T ss_pred HHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh
Confidence 568899999999 99885 667888887777777665 47888999999999988887776 999999999999
Q ss_pred chhhHHHHHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHhhcccccCCCCcCC
Q 041273 73 KTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLHKHNEDG 152 (362)
Q Consensus 73 r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 152 (362)
|+++.++...+..+|.++++.+++++.+. ..|||..| ++.++..++..+..+..||+++++++ +
T Consensus 141 rg~~~~i~~~g~~lG~llg~~l~~~l~~~------~~GWr~~f---------~i~a~l~ll~~l~~~~~~e~~~~~~~-~ 204 (491)
T PRK11010 141 RGAGAAISVLGYRLAMLVSGGLALWLADR------YLGWQGMY---------WLMAALLIPCIIATLLAPEPTDTIPV-P 204 (491)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhc------ccCHHHHH---------HHHHHHHHHHHHHHHhcCCCcccccc-c
Confidence 99999999999999999999999998861 25888777 56565555555555567775432110 0
Q ss_pred ccccccchhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCch
Q 041273 153 VSLDVSCDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTE 232 (362)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ 232 (362)
++.+ ++...+.++.+++++.+...+..++..........+.+.|+.+. .|+|+.
T Consensus 205 ~~~~---------------------~~~~~~l~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~-----~G~s~~ 258 (491)
T PRK11010 205 KTLE---------------------QAVVAPLRDFFGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRG-----VGFDAG 258 (491)
T ss_pred cchh---------------------hhHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHH
Confidence 0000 00123455677777776655555555444444445556565443 699999
Q ss_pred hhHHHHHHH-HHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 041273 233 NAGQVLAIS-GFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMT 311 (362)
Q Consensus 233 ~~g~~~~~~-~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (362)
+.+...... .++.+++. ++.+++.||+++|+.+..+..+..+..+.+........ ..+.. .....+.........+
T Consensus 259 ~~g~~~~~~g~i~~iiG~-ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~-~~~~l-~~~~~l~~~~~g~~~~ 335 (491)
T PRK11010 259 EVGLVNKTLGLLATIVGA-LYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDK-NLYSM-GAAVFFENLCGGMGTA 335 (491)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccc-cHHHH-HHHHHHHHHHHHHHHH
Confidence 999987544 45677776 99999999999988777666554444333322221111 11111 1111111111222223
Q ss_pred HHHHHHhhhccccccCCCC-----------------------CCChhHHHHHHHHHHHHHHHhhcc
Q 041273 312 GLFLLQNRAVSQKRQGAGF-----------------------LPGNQMIFFILNLVEALGVILTFK 354 (362)
Q Consensus 312 ~~~~~~~~~~p~~~~~~~~-----------------------~~g~~~~f~~~~~~~~i~~~~~~~ 354 (362)
....+..+..+++..+..+ ..|++..|.+.+++++++.+...+
T Consensus 336 ~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~ 401 (491)
T PRK11010 336 AFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLV 401 (491)
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555532221100 016778888899998888777654
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.2e-24 Score=191.47 Aligned_cols=308 Identities=15% Similarity=0.204 Sum_probs=201.7
Q ss_pred cccchhhhhhccc-----CCch-HHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccc
Q 041273 2 LTSVLWGMVADRC-----GRKP-VIIIGCITVVIFNTLFGLS---VSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQ 71 (362)
Q Consensus 2 i~~~~~G~l~Dr~-----Grr~-~l~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~ 71 (362)
+.++++|+++||+ |||| .+..+.++.+++....++. ++++.+++..++.+...+...|. .+++.|+.|+|
T Consensus 47 ~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~ 126 (402)
T PRK11902 47 IFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPE 126 (402)
T ss_pred HHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 3578999999999 8875 7888888888888877776 35777888888888877777777 99999999999
Q ss_pred cchhhHHHHHHhhhhhhhhhhhhhhhhcCccccCCcc-cccccccccccchhhHHHHHHHHHHHHHHHhhcccccCCCCc
Q 041273 72 HKTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKA-FSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLHKHNE 150 (362)
Q Consensus 72 ~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~-~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 150 (362)
||+++.++...+.++|.++++.+++.+.+ . .|||..| ++.++..++..+.....||+++++++
T Consensus 127 ~r~~~~~~~~~g~~~g~i~g~~l~~~l~~-------~~~gw~~~f---------~i~a~~~l~~~l~~~~~~e~~~~~~~ 190 (402)
T PRK11902 127 ERGAGAAVKVLGYRLAMLVSGGLALWLAD-------RVLGWGNTY---------LLMAGLMLAGALTTLWAPEPEVPARP 190 (402)
T ss_pred hhhHHHHHHHHHHHHHHHHHhHHHHHHHh-------cccCHHHHH---------HHHHHHHHHHHHHHHhcCCCcccccc
Confidence 99999999999999999999999998886 4 4787776 55555555444445567775433211
Q ss_pred CCccccccchhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCC
Q 041273 151 DGVSLDVSCDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYS 230 (362)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s 230 (362)
+++. + ++..++.++++|||.++...+..++..........+.+.++.+. .|++
T Consensus 191 ~~~~-~---------------------~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~-----~G~~ 243 (402)
T PRK11902 191 PRSL-G---------------------EAVVGPLRDFFSRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRG-----AGFS 243 (402)
T ss_pred cchh-H---------------------HHHHHHHHHHHhCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----cCCC
Confidence 1100 0 01234566788999888777666555543333323333343332 6899
Q ss_pred chhhHHHHHHHHHH-HHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH---HHHHHHHHH
Q 041273 231 TENAGQVLAISGFS-LLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINC---ASVMKNVLS 306 (362)
Q Consensus 231 ~~~~g~~~~~~~~~-~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 306 (362)
+++.|.+....+.. .+++. ++.+++.||+++|+.+..+..+..+..+.+......++ ..+..... ..+..+...
T Consensus 244 ~~~~g~~~~~~~~~~~i~g~-~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~ 321 (402)
T PRK11902 244 AGEVGIVNKTLGLAATIVGA-LAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPK-HLWTMALAIGIENLCGGMGT 321 (402)
T ss_pred HHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHHH
Confidence 99999988766654 56665 89999999999999877666665554433322222111 11211111 112222233
Q ss_pred HHhhhHHHHHHhhhccccccC---CC---------CC-------CChhHHHHHHHHHHHHHHHhhcc
Q 041273 307 VSIMTGLFLLQNRAVSQKRQG---AG---------FL-------PGNQMIFFILNLVEALGVILTFK 354 (362)
Q Consensus 307 ~~~~~~~~~~~~~~~p~~~~~---~~---------~~-------~g~~~~f~~~~~~~~i~~~~~~~ 354 (362)
....+....++++..|....+ .. .. .|++..|...+++++++.++.++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~ 388 (402)
T PRK11902 322 AAFVALLMALCNRSFSATQYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWL 388 (402)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 334555666677776632221 00 00 16788888888888888777654
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.4e-24 Score=192.00 Aligned_cols=272 Identities=17% Similarity=0.161 Sum_probs=189.5
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTL 80 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~ 80 (362)
++++++|+++||+|||+.+..+..+..++.+++.++++++.+++.|+++|++.+...+. .+++.|++|++++++..+..
T Consensus 56 ~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (401)
T PRK11043 56 LGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATI 135 (401)
T ss_pred HHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999988776666 88999999999999999999
Q ss_pred HHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHhhcccccCCCCcCCccccccch
Q 041273 81 STAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLHKHNEDGVSLDVSCD 160 (362)
Q Consensus 81 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 160 (362)
....++|..++|.+++++.+ ..|||..+ .+.++..++..+..+.++|+++++++ ++
T Consensus 136 ~~~~~~~~~~g~~i~~~l~~-------~~g~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---- 191 (401)
T PRK11043 136 MPLVALSPALAPLLGAWLLN-------HFGWQAIF---------ATLFAITLLLILPTLRLKPSKKARKQ----SQ---- 191 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHh-------cCChHHHH---------HHHHHHHHHHHHHHHHcCCCCCcccc----ch----
Confidence 99999999999999999988 77888766 45555555444444555554322110 00
Q ss_pred hhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHHHH
Q 041273 161 ALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLAI 240 (362)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~ 240 (362)
...+.++.+|+|+++...+...+.......+....|.+..+ .|+++.+.|.....
T Consensus 192 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~------~g~s~~~~g~~~~~ 246 (401)
T PRK11043 192 -------------------DALTFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFILEQ------MGYSPADIGLSYVP 246 (401)
T ss_pred -------------------HHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHHHH------cCCCHHHHHHHHHH
Confidence 12345667788887765555544444445555566766543 58899999988877
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhh
Q 041273 241 SGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMTGLFLLQNRA 320 (362)
Q Consensus 241 ~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (362)
..++..+++ +..+++.||+++|+..........++.+.+...........+ .........+......+|.......+.
T Consensus 247 ~~~~~~~g~-~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (401)
T PRK11043 247 QTIAFLVGG-YGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLV-PLLIPFCVMAAANGAIYPIVVAQALRP 324 (401)
T ss_pred HHHHHHHHH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHH-HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 777777877 788899999999887766655554443333222211111111 122222222333444556666665566
Q ss_pred cccc
Q 041273 321 VSQK 324 (362)
Q Consensus 321 ~p~~ 324 (362)
.|+.
T Consensus 325 ~~~~ 328 (401)
T PRK11043 325 FPQA 328 (401)
T ss_pred Cccc
Confidence 6643
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-24 Score=194.64 Aligned_cols=254 Identities=16% Similarity=0.192 Sum_probs=201.9
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSV--SFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLS 78 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~ 78 (362)
+++++.|+++||+|-|+++..+.++.++++++...+. +++.+++.|++||++.|...|+ ..+.+.|.|++||++..+
T Consensus 88 ~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~a 167 (466)
T KOG2532|consen 88 LGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNERSTFIA 167 (466)
T ss_pred HHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHHHHHHHH
Confidence 5688999999999999999999999999999998775 5667899999999999999898 999999999999999999
Q ss_pred HHHHhhhhhhhhhhhhhhhhcCccccCCcc-cccccccccccchhhHHHHHHHHHHHHHHHh-hcccccCCCCcCCcccc
Q 041273 79 TLSTAWGTGLIIGPAVGGFLAQPAEKYPKA-FSKESMFGKFPYFLPCLCMSLFAFAVTIASC-WIPETLHKHNEDGVSLD 156 (362)
Q Consensus 79 ~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~-~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~ 156 (362)
+...+..+|.+++-+++|++.+ . +||++.| ++.++.+++..++++ +..|+|.+++.-.+++.
T Consensus 168 il~~g~q~g~v~~mp~sg~lc~-------s~~GW~sif---------Y~~g~~g~i~~~~w~~~~~d~P~~h~~is~~El 231 (466)
T KOG2532|consen 168 ILTAGSQLGTIITMPVSGLLCE-------SSLGWPSIF---------YVFGIVGLIWFILWFLFYSDSPSKHPNISEKEL 231 (466)
T ss_pred HHHHHHHHHHHHHHHhHHHHhc-------cCCCCchHH---------HHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHH
Confidence 9999999999999999999998 6 8999988 788888877655554 45555554332222211
Q ss_pred ccchhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHH
Q 041273 157 VSCDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQ 236 (362)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~ 236 (362)
+.+++. ..+ ++.++..+.+++++++++.++...+..+..+.....+..+.|.|+.+. +|++..+.|+
T Consensus 232 ---~~I~~~---k~~--~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~V-----L~f~v~~~G~ 298 (466)
T KOG2532|consen 232 ---KYIEKG---KSE--AHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEV-----LGFDVRETGF 298 (466)
T ss_pred ---HHHHhc---ccc--cccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-----hCCChhhhhH
Confidence 111111 111 111111467899999999999999999999999999999999999988 8999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhch---------hHHHHHHHHHHHHHHHHHHHHHh
Q 041273 237 VLAISGFSLLVFQLTLYPYVERMIGP---------IIITRIAGVLSIPLLTSYTYIAM 285 (362)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~l~~~~g~---------~~~~~~~~~~~~~~~~~~~~~~~ 285 (362)
+.++..+...+.. ++.+.++||..+ |..-.++....++.++.+++...
T Consensus 299 ~salP~l~~~~~k-~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~ 355 (466)
T KOG2532|consen 299 LSALPFLAMAIVK-FVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSD 355 (466)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCC
Confidence 9999999999998 999999998755 22333555555555555555554
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.2e-24 Score=198.10 Aligned_cols=298 Identities=13% Similarity=0.114 Sum_probs=182.0
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTL 80 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~ 80 (362)
+++++.|+++||+|||+.+..+.++.+++.+++.+++|++.+++.|++.|++.+...+. ..++.|.+|+|+|+++++..
T Consensus 70 ~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 149 (496)
T PRK03893 70 FGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFL 149 (496)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999998877666 99999999999999999999
Q ss_pred HHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHhhcccccCCCCcCCccccccch
Q 041273 81 STAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLHKHNEDGVSLDVSCD 160 (362)
Q Consensus 81 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 160 (362)
....++|..++|.+++.+.+ ..|||+.| .+..+..++.++....+||+++++++++++.+ ..+
T Consensus 150 ~~~~~~g~~~~~~~~~~l~~-------~~~w~~~f---------~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~ 212 (496)
T PRK03893 150 ISGFSIGAVVAAQVYSLVVP-------VWGWRALF---------FIGILPIIFALWLRKNLPEAEDWKEKHAGKAP-VRT 212 (496)
T ss_pred HHHHHHHHHHHHHHHHHHhc-------cCCHHHHH---------HHHHHHHHHHHHHHHhCCCchhhhhhcccccc-chh
Confidence 99999999999999999987 78888776 33333333333444556765443221111110 000
Q ss_pred hhhhhcCCCCccccccCc-----ccchhhh-------------------------c-cccc-chhHHHHHHHHHHHHHHh
Q 041273 161 ALESACGSNAEFKQDEGS-----EEATAKK-------------------------S-LMKN-WPFISSTIVYCVFSLHDI 208 (362)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~-----~~~~~~~-------------------------~-~~~~-~~~~~~~~~~~~~~~~~~ 208 (362)
..+.....+......... ....... + ..++ +.........+.......
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (496)
T PRK03893 213 MVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSW 292 (496)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccc
Confidence 000000000000000000 0000000 0 0000 000011111111111111
Q ss_pred HHHHHHHhHhcccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 041273 209 AYTEIFSLWAISPWKYGGLSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSG 288 (362)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (362)
....++|.|+.+. +|+++.+.+.+.+...++..+++ ++.+++.||+++|+.+..+..+..+..+.+..... .
T Consensus 293 ~~~~~lp~~l~~~-----~g~~~~~~g~~~~~~~~~~~~g~-~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~-~- 364 (496)
T PRK03893 293 PIQALLPTYLKTD-----LGYDPHTVANVLFFSGFGAAVGC-CVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGG-A- 364 (496)
T ss_pred hHHHHHHHHHHhh-----cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-c-
Confidence 2345677777544 78999999999999999999998 89999999999999887776555544333222211 1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcccccc
Q 041273 289 FSLALLINCASVMKNVLSVSIMTGLFLLQNRAVSQKRQ 326 (362)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 326 (362)
..+. ...........+.+..+....++.+..|+++.
T Consensus 365 -~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (496)
T PRK03893 365 -NVWV-LGLLLFFQQMLGQGISGLLPKLIGGYFDTEQR 400 (496)
T ss_pred -HHHH-HHHHHHHHHHHhcccchhhHHHHHhhCCHHHh
Confidence 1111 11111221222223344556677888885443
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.4e-24 Score=192.29 Aligned_cols=297 Identities=16% Similarity=0.215 Sum_probs=188.5
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTL 80 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~ 80 (362)
+++++.|+++||+|||+.+..+.++.+++.+++.++++++.+++.|++.|++.+...+. .+++.|++|+++|++++++.
T Consensus 67 ~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 146 (398)
T TIGR00895 67 FGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLM 146 (398)
T ss_pred HHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhH
Confidence 56789999999999999999999999999999999999999999999999998888777 99999999999999999999
Q ss_pred HHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHH-HHHHHHhhcccccCCCCcCCccc-ccc
Q 041273 81 STAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAF-AVTIASCWIPETLHKHNEDGVSL-DVS 158 (362)
Q Consensus 81 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~~~~~~~~~~~~-~~~ 158 (362)
.....+|..++|.+++.+.+ ..|||..+ .+.++..+ ...+....+||+++...+++++. ++.
T Consensus 147 ~~~~~~g~~~~~~~~~~l~~-------~~g~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (398)
T TIGR00895 147 FCGYPIGAAVGGFLAGWLIP-------VFGWRSLF---------YVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRI 210 (398)
T ss_pred hhHHHHHHHHHHHHHHHHhh-------cccceeeh---------hhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHH
Confidence 99999999999999999987 77888776 44433333 34445566788765322221111 101
Q ss_pred chhhhhhcCCCCc--cccc-cCcccchh-hhcccccc---hhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCc
Q 041273 159 CDALESACGSNAE--FKQD-EGSEEATA-KKSLMKNW---PFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYST 231 (362)
Q Consensus 159 ~~~~~~~~~~~~~--~~~~-~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~ 231 (362)
.+........+++ .+++ ++++..+. .+..++++ ......+...+..........+.|.+..+ .|+++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~ 284 (398)
T TIGR00895 211 VNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVE------LGFSL 284 (398)
T ss_pred HHHHHHhccccccccccccccccchhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCH
Confidence 1111111100000 0000 01111111 22233332 22223333333333344444455633322 68899
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 041273 232 ENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMT 311 (362)
Q Consensus 232 ~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (362)
.+.+.......++.+++. ++.+++.||+++|+... +.....+....+.... .+ .+. ......+.+.+.....+
T Consensus 285 ~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~--~~~-~~~~~~~~g~~~~~~~~ 357 (398)
T TIGR00895 285 SLAATGGALFNFGGVIGS-IIFGWLADRLGPRVTAL-LLLLGAVFAVLVGSTL--FS--PTL-LLLLGAIAGFFVNGGQS 357 (398)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHhhcchHHHHH-HHHHHHHHHHHHHHHh--hC--HHH-HHHHHHHHHHHHHHHHH
Confidence 999999999999999998 89999999999884443 3333333322222211 11 111 12222333334455567
Q ss_pred HHHHHHhhhccccccC
Q 041273 312 GLFLLQNRAVSQKRQG 327 (362)
Q Consensus 312 ~~~~~~~~~~p~~~~~ 327 (362)
....+..+..|++..+
T Consensus 358 ~~~~~~~~~~~~~~~g 373 (398)
T TIGR00895 358 GLYALMALFYPTAIRA 373 (398)
T ss_pred HHHHHHhhcCCHHHHH
Confidence 7888899998865443
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-23 Score=186.32 Aligned_cols=232 Identities=10% Similarity=0.070 Sum_probs=162.2
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHhhhcCcchhHHHHHHhhhccccchhh
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLS-----VSFWMAIATRFLLGALNGLLGPIKAYACEILRDQHKTLG 76 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~r~~~ 76 (362)
++.++.|++.||+|.|+++.++.++.++.++..+++ ++++.+++.|++.|++.+.+.+....+++++|+|+||++
T Consensus 85 l~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gigg~~f~~~~~~vs~wfp~~~rG~A 164 (462)
T PRK15034 85 LLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFAGANFASSMGNISFFFPKAKQGSA 164 (462)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHCCHhHhHHH
Confidence 456788999999999999999999999999999987 899999999999999855444459999999999999999
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhc-----CccccCCcccccccccc----cccchhhHHHHHHHHHHHH-HHHhhcccccC
Q 041273 77 LSTLSTAWGTGLIIGPAVGGFLA-----QPAEKYPKAFSKESMFG----KFPYFLPCLCMSLFAFAVT-IASCWIPETLH 146 (362)
Q Consensus 77 ~~~~~~~~~~g~~~g~~~~~~l~-----~~~~~~~~~~gw~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~ 146 (362)
+|+.....++|..+++.+...+. + .+||+.... ...++...++..++.++.. +.++..+|.++
T Consensus 165 ~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~-------~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~ 237 (462)
T PRK15034 165 LGINGGLGNLGVSVMQLVAPLVIFVPVFA-------FLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS 237 (462)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHH-------HhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 99997777777766655554433 2 334433221 1112222233334333333 33333333221
Q ss_pred CCCcCCccccccchhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccc
Q 041273 147 KHNEDGVSLDVSCDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGG 226 (362)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (362)
. ++ ..++.++.+|+|+.|...+.+++.+....++...+|.|..+.
T Consensus 238 -~---~~--------------------------~~~~~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~----- 282 (462)
T PRK15034 238 -S---RA--------------------------SIADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQ----- 282 (462)
T ss_pred -c---cc--------------------------CHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 1 00 123455689999999999999998888888888899887553
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH
Q 041273 227 LSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLT 278 (362)
Q Consensus 227 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~ 278 (362)
+ +............+...+.+ ++.|+++||+|+++.+.++.+...+...
T Consensus 283 ~--~~~~~l~~~~l~~l~~~l~r-plgG~LADRiG~~~vl~~~~i~~~i~~~ 331 (462)
T PRK15034 283 F--PDVNILRLAFFGPFIGAIAR-SVGGAISDKFGGVRVTLINFIFMAIFSA 331 (462)
T ss_pred c--ChHHHHHHHHHHHHHHHHHH-HhhHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 2 22222222334456666776 8999999999999999888876666543
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-24 Score=201.95 Aligned_cols=339 Identities=14% Similarity=0.105 Sum_probs=221.0
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTL 80 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~ 80 (362)
+++++.|+++|++|||+.++.+.+++.++.+++++++|+++++++|+++|+|.|..... ..+++|..|++.||...+..
T Consensus 104 ~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~ 183 (513)
T KOG0254|consen 104 VGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLY 183 (513)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999998887666 99999999999999999999
Q ss_pred HHhhhhhhhhhhhhhhhhcCccccCCcc-cccccccccccchhhHHHHHHHHHHHHHHHhhcccccCCCCcCCccccccc
Q 041273 81 STAWGTGLIIGPAVGGFLAQPAEKYPKA-FSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLHKHNEDGVSLDVSC 159 (362)
Q Consensus 81 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~-~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 159 (362)
+....+|..++..++....+ . .+||..+ .+..+.+++..+...++||+|++..++++..+ ..
T Consensus 184 ~l~~~~Gi~~~~~~~~~~~~-------~~~~Wr~~~---------~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~-a~ 246 (513)
T KOG0254|consen 184 QLFITIGILLGYCINYGTSK-------VYAGWRIPL---------GLALIPAVILALGMLFLPESPRWLIEKGRLEE-AK 246 (513)
T ss_pred HHHHHHHHHHHHHHhhhhcc-------CCccHHHHH---------HHHHHHHHHHHHHHHhCCCChHHHHHcCChHH-HH
Confidence 99999999999666655543 1 4565443 67777777766668899999998655443332 22
Q ss_pred hhhhhhcCC-CC----cccccc--------CcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccc
Q 041273 160 DALESACGS-NA----EFKQDE--------GSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGG 226 (362)
Q Consensus 160 ~~~~~~~~~-~~----~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (362)
+.+.+..+. ++ +.+..+ ..+.....+++++++......+...+..+++.+.......|..+. .+.
T Consensus 247 ~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~i--f~~ 324 (513)
T KOG0254|consen 247 RSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTI--FKS 324 (513)
T ss_pred HHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHH--HHh
Confidence 222222221 11 110000 000111233444422333344444444444444333333333222 222
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhh-------hhHHHHHHHHH
Q 041273 227 LSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSG-------FSLALLINCAS 299 (362)
Q Consensus 227 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 299 (362)
.|.+... .......++...++. .+...+.||+|||+.+..+...+.++.++++....... ...+..+....
T Consensus 325 ~g~~~~~-~~~~~~~~~v~~~~t-~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (513)
T KOG0254|consen 325 AGLKSDT-FLASIILGVVNFLGT-LVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLC 402 (513)
T ss_pred cCCCCch-HHHHHHHHHHHHHHH-HHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHH
Confidence 3444332 333344455555555 56689999999999999999999988777765543321 23344555555
Q ss_pred HHHHHHHHHhhhHHHHHHhhhcccccc-CCCCCC----------------------ChhHHHHHHHHHHHHHHH-hhccc
Q 041273 300 VMKNVLSVSIMTGLFLLQNRAVSQKRQ-GAGFLP----------------------GNQMIFFILNLVEALGVI-LTFKP 355 (362)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~----------------------g~~~~f~~~~~~~~i~~~-~~~~~ 355 (362)
.....+..+..|..+.+.+|.+|.+-. .+.... +....|..++.++.++.+ ..+ .
T Consensus 403 ~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~-~ 481 (513)
T KOG0254|consen 403 LFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVF-F 481 (513)
T ss_pred HHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhe-E
Confidence 565666777778888899999992221 111000 123567777777777766 444 4
Q ss_pred cccccCC
Q 041273 356 FLIQRAT 362 (362)
Q Consensus 356 ~l~~~~~ 362 (362)
+.||+|+
T Consensus 482 ~~pETkg 488 (513)
T KOG0254|consen 482 FVPETKG 488 (513)
T ss_pred EcccCCC
Confidence 8898874
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.9e-24 Score=191.67 Aligned_cols=290 Identities=15% Similarity=0.138 Sum_probs=180.5
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHh--------hhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhcccc
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFG--------LSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQH 72 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~--------~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~ 72 (362)
+++++.|+++||+||||+++.+.+...++.+... ..++++.+++.|+++|++.+...+. .+++.|+.|+|+
T Consensus 66 i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~ 145 (392)
T PRK12382 66 LTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH 145 (392)
T ss_pred HHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc
Confidence 5689999999999999999999887776654322 1358899999999999998887777 889999999999
Q ss_pred chhhHHHHHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHhhcccccCCCCcCC
Q 041273 73 KTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLHKHNEDG 152 (362)
Q Consensus 73 r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 152 (362)
|++++++.+.+.+.|..+||.+++.+.+ ..|||..+ .+..+..++.+......||+++++ +
T Consensus 146 r~~a~~~~~~~~~~g~~~g~~~~~~l~~-------~~g~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~---~ 206 (392)
T PRK12382 146 SGKVMSWNGMAMYGALAAGAPLGLLLHS-------HFGFAALA---------LTTMVLPLLAWAFNGTVRKVPAHA---G 206 (392)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHh-------ccChHHHH---------HHHHHHHHHHHHHHHhccCCCCCc---c
Confidence 9999999999999999999999999987 66776543 333232222222222233321110 0
Q ss_pred ccccccchhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCch
Q 041273 153 VSLDVSCDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTE 232 (362)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ 232 (362)
+ ++ +..+..+..+ ++.+ ...+..........+.+.|+.+ .+++
T Consensus 207 ~-~~----------------------~~~~~~~~~~-~~~~-----~~~l~~~~~~~~~~~~~~~~~~------~~~~-- 249 (392)
T PRK12382 207 E-RP----------------------SLWSVVGLIW-KPGL-----GLALQGVGFAVIGTFVSLYFAS------KGWA-- 249 (392)
T ss_pred c-Cc----------------------hHHHHHHHHH-HhHH-----HHHHHHHHHhHHHHHHHHHHHh------cCCc--
Confidence 0 00 0001111111 1111 1112222223334455656543 2443
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhH
Q 041273 233 NAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMTG 312 (362)
Q Consensus 233 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (362)
+.+......+++.++++ +..+++.||+++|+.+..+..+..++.+.+.+..+ .+. ..+...+.+.......+.
T Consensus 250 ~~~~~~~~~~~~~~~~~-~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~l~g~~~~~~~~~ 322 (392)
T PRK12382 250 MAGFTLTAFGGAFVLMR-VLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPT-----AWV-ALAGAALTGAGCSLIFPA 322 (392)
T ss_pred hhHHHHHHHHHHHHHHH-HHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHccc-----HHH-HHHHHHHHHHHHHhHHHH
Confidence 34555666677777777 88899999999999988887777776655443321 111 122222323333444566
Q ss_pred HHHHHhhhccccccCCCC-----------------------CCChhHHHHHHHHHHHHHHHhhcc
Q 041273 313 LFLLQNRAVSQKRQGAGF-----------------------LPGNQMIFFILNLVEALGVILTFK 354 (362)
Q Consensus 313 ~~~~~~~~~p~~~~~~~~-----------------------~~g~~~~f~~~~~~~~i~~~~~~~ 354 (362)
......+..|+++.+... ..|++..|.+.+++.+++.++.+.
T Consensus 323 ~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 323 LGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence 666777777643332110 016778888888888888776653
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-23 Score=190.28 Aligned_cols=316 Identities=12% Similarity=0.071 Sum_probs=195.2
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHhhhcCcchhH-HHHHHhhhccccchhhHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIA-TRFLLGALNGLLGPI-KAYACEILRDQHKTLGLST 79 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~-~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~ 79 (362)
++.++.|+++||+|||++++.+.++.+++.++++++++++.+++ .|+++|++.+...+. .+++.|+++ ++|++++++
T Consensus 69 ~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~ 147 (455)
T TIGR00892 69 AGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGL 147 (455)
T ss_pred HhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHH
Confidence 46789999999999999999999999999999999999998875 579999998875444 888889885 789999999
Q ss_pred HHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHhhc-ccccCCCCcCCcccccc
Q 041273 80 LSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWI-PETLHKHNEDGVSLDVS 158 (362)
Q Consensus 80 ~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~ 158 (362)
.+.+..+|..++|.+++.+.+ .+|||+.| ++.+++.++..+..++. |+.+.++..+.++.+
T Consensus 148 ~~~~~~~g~~~~~~l~~~l~~-------~~gwr~~f---------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-- 209 (455)
T TIGR00892 148 AMAGSPVFLSTLAPLNQYLFE-------SFGWRGSF---------LILGGLLLHCCVCGALMRPVGPSQRVSKSKSKE-- 209 (455)
T ss_pred HHhcccHHHHHHHHHHHHHHH-------HhChHHHH---------HHHHHHHHHHHHHHHHhCCCCcccccccccccc--
Confidence 999999999999999999988 78898877 55555544433333333 322111110000000
Q ss_pred chhhhhhcCCCC-ccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHH
Q 041273 159 CDALESACGSNA-EFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQV 237 (362)
Q Consensus 159 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~ 237 (362)
..++....++ +.+...++..+....+++++|+++......++..........+++.|..+ .|+++.+.+.+
T Consensus 210 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~------~g~s~~~~g~~ 281 (455)
T TIGR00892 210 --GLPPDGSTKKLSKKSTAEKINRFLDFSLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKD------KGVDEYEAAFL 281 (455)
T ss_pred --cCCCCCccccccccchhhhhhhhcchHHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHH------cCCCHHHHHHH
Confidence 0000000000 00000000011111257788888877776666655555555566767643 58899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh--chhHHHHHHH--HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHH
Q 041273 238 LAISGFSLLVFQLTLYPYVERMI--GPIIITRIAG--VLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMTGL 313 (362)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~l~~~~--g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (362)
.+..+++.++++ ++.+++.||. ++++....+. ....+..++.... + ..+. ..+...+.+.......+..
T Consensus 282 ~~~~~~~~~~~~-~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~---~--~~~~-~~i~~~~~G~~~g~~~~~~ 354 (455)
T TIGR00892 282 LSIIGFVDIFAR-PSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALA---G--DYTG-LVIYCIFFGLSFGSVGALL 354 (455)
T ss_pred HHHHHHHHHHHH-HHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHh---c--hHHH-HHHHHHHHHHHhchHHHHH
Confidence 999999999887 8889999873 3343333332 2222222222221 1 1121 1222223233334445666
Q ss_pred HHHHhhhccccccCCC----------------C--------CCChhHHHHHHHHHHHHHHHh
Q 041273 314 FLLQNRAVSQKRQGAG----------------F--------LPGNQMIFFILNLVEALGVIL 351 (362)
Q Consensus 314 ~~~~~~~~p~~~~~~~----------------~--------~~g~~~~f~~~~~~~~i~~~~ 351 (362)
..+..+.+|.++.+.. . ..+++..|++.+++.+++.+.
T Consensus 355 ~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~ 416 (455)
T TIGR00892 355 FEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLF 416 (455)
T ss_pred HHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence 7777787774332111 0 013667888877776666543
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.5e-23 Score=183.76 Aligned_cols=287 Identities=12% Similarity=0.165 Sum_probs=192.0
Q ss_pred cchhhhhhccc-----CCchH-HHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccc
Q 041273 4 SVLWGMVADRC-----GRKPV-IIIGCITVVIFNTLFGLS---VSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHK 73 (362)
Q Consensus 4 ~~~~G~l~Dr~-----Grr~~-l~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r 73 (362)
.+++|+++||+ ||||. ++.+.+..++.....++. .+.+.+....++.+.+.+...+. .+++.|++|+|+|
T Consensus 38 ~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r 117 (356)
T TIGR00901 38 KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEEL 117 (356)
T ss_pred HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhh
Confidence 68899999998 89886 567777777777777776 46667777788888887777777 9999999999999
Q ss_pred hhhHHHHHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHh-hcccccCCCCcCC
Q 041273 74 TLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASC-WIPETLHKHNEDG 152 (362)
Q Consensus 74 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~~ 152 (362)
+++.++...+.++|.++++.+++.+.+ ..|.... .+|.|+.++++.++..++..+..+ ..||+.++++. +
T Consensus 118 ~~~~~~~~~~~~~G~~~~~~l~~~l~~-------~~g~~~~-~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~~~~-~ 188 (356)
T TIGR00901 118 GYGSTIYIVGYRAGMLLSGSLALVLAS-------PEFANTG-LITLWGYIFFWTALLILPGLLVTLFLAKEPQEDASV-P 188 (356)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhh-------hcccccc-cccccHHHHHHHHHHHHHHHHHHHHhccCCCccccc-c
Confidence 999999999999999999999999887 4441110 122333333666666555444444 34663221111 0
Q ss_pred ccccccchhhhhhcCCCCccccccCcccchhhhcccccch---hHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCC
Q 041273 153 VSLDVSCDALESACGSNAEFKQDEGSEEATAKKSLMKNWP---FISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSY 229 (362)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 229 (362)
++.+ ++..+..++++|+|. ++...+..++..........+.|.|+.+ .|+
T Consensus 189 ~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~g~ 241 (356)
T TIGR00901 189 KPLT---------------------QAVLKPIREFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLD------MGF 241 (356)
T ss_pred hhHH---------------------HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCC
Confidence 0000 001234556667765 5555555555555556666677877754 588
Q ss_pred CchhhHHHHHHHHH-HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhh------hhHHHHHHHHHHHH
Q 041273 230 STENAGQVLAISGF-SLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSG------FSLALLINCASVMK 302 (362)
Q Consensus 230 s~~~~g~~~~~~~~-~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 302 (362)
++.+.+.+....+. ..+++. ++.+++.||+|+|+.+..+.++..+....+.+...... ...+ .......+.
T Consensus 242 ~~~~~g~~~~~~~~~~~~~g~-~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ 319 (356)
T TIGR00901 242 SKEEIALVAKINGLLGAILGG-LIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLL-MLFLTITLE 319 (356)
T ss_pred CHHHHHHHhHHHHHHHHHHHH-HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHH-HHHHHHHHH
Confidence 99999988887775 455555 88999999999999988888777766555544321110 1112 222333333
Q ss_pred HHHHHHhhhHHHHHHhhhccccccCC
Q 041273 303 NVLSVSIMTGLFLLQNRAVSQKRQGA 328 (362)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~p~~~~~~ 328 (362)
.++.....+...++..|.+|+++++.
T Consensus 320 ~~~~~~~~~~~~~~~~~~~p~~~~g~ 345 (356)
T TIGR00901 320 AVTGGLGTVAFVAFLSKLSNPKFGAT 345 (356)
T ss_pred HHHhHHHHHHHHHHHHHhcCCCccHH
Confidence 44555667888999999999776543
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-23 Score=185.36 Aligned_cols=277 Identities=21% Similarity=0.347 Sum_probs=214.0
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTL 80 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~ 80 (362)
+++++.|+++||+|||+.+..+.....++.+...+.++++.+++.|++.|++.+...+. .+++.|++|+|+|++++++.
T Consensus 49 ~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (352)
T cd06174 49 LGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLF 128 (352)
T ss_pred HHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHH
Confidence 56899999999999999999999999999999999999999999999999999988777 99999999999999999999
Q ss_pred HHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHhhcccccCCCCcCCccccccch
Q 041273 81 STAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLHKHNEDGVSLDVSCD 160 (362)
Q Consensus 81 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 160 (362)
+...++|..++|.+++.+.+ ..+||..+ .+.++..++..+...+.+
T Consensus 129 ~~~~~~g~~~~~~~~~~~~~-------~~~~~~~~---------~~~~~~~~~~~~~~~~~~------------------ 174 (352)
T cd06174 129 SAGFGLGALLGPLLGGLLAE-------SLGWRWLF---------LILAILGLLLALLLLFLL------------------ 174 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HhhHHHHH---------HHHHHHHHHHHHHHHHHH------------------
Confidence 99999999999999999987 66777665 444444444333333333
Q ss_pred hhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHHHH
Q 041273 161 ALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLAI 240 (362)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~ 240 (362)
|+++...+..++............+.+..+. .|.++.+.+.....
T Consensus 175 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 219 (352)
T cd06174 175 ------------------------------RLLLLLALAFFLLSFGYYGLLTYLPLYLQEV-----LGLSAAEAGLLLSL 219 (352)
T ss_pred ------------------------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHH
Confidence 2345555555666666666667777777654 58899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhH-HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhh
Q 041273 241 SGFSLLVFQLTLYPYVERMIGPII-ITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMTGLFLLQNR 319 (362)
Q Consensus 241 ~~~~~~~~~~~~~~~l~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (362)
.+++..++. ++.+++.||+++|+ .+..+..+..++.+......+ .........+.+.......+....+..|
T Consensus 220 ~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 292 (352)
T cd06174 220 FGLGGILGA-LLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPS------LALLLVALLLLGFGLGFAFPALLTLASE 292 (352)
T ss_pred HHHHHHHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc------HHHHHHHHHHHHHHHhccchhHHHHHHh
Confidence 999999998 89999999999999 888888887777766655442 1123334444444556667888899999
Q ss_pred hccccccCCCC-----------------------CCChhHHHHHHHHHHHHHHHhhcc
Q 041273 320 AVSQKRQGAGF-----------------------LPGNQMIFFILNLVEALGVILTFK 354 (362)
Q Consensus 320 ~~p~~~~~~~~-----------------------~~g~~~~f~~~~~~~~i~~~~~~~ 354 (362)
..|+++.+... ..|++.+|.+.+++.+++.+..+.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~~ 350 (352)
T cd06174 293 LAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLL 350 (352)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhee
Confidence 98843332110 125677888888888887776543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.8e-24 Score=181.40 Aligned_cols=308 Identities=15% Similarity=0.138 Sum_probs=225.3
Q ss_pred cchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhh---HHHHHHHHHHHhhhcCcchhHHHHHHhhhccccchhhHHHH
Q 041273 4 SVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVS---FWMAIATRFLLGALNGLLGPIKAYACEILRDQHKTLGLSTL 80 (362)
Q Consensus 4 ~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~---~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 80 (362)
-++.|.+.||+|.|++...+.++..+-++..+++.+ +|++++.+++.|++.+.+.....++++++|+|++|.++|+.
T Consensus 66 Rl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~ 145 (417)
T COG2223 66 RLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMPNASFFFPKEKQGLALGIA 145 (417)
T ss_pred HHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcccceehcccccccccCChhhhhHHHHHh
Confidence 467899999999999999999999999999988864 45999999999999999988899999999999999999999
Q ss_pred HHhhhhhhhhhhhhhhhhcCccccCCcccc---cccccccccchhhHHHHHHHHHH-HHHHHhhcccccCCCCcCCcccc
Q 041273 81 STAWGTGLIIGPAVGGFLAQPAEKYPKAFS---KESMFGKFPYFLPCLCMSLFAFA-VTIASCWIPETLHKHNEDGVSLD 156 (362)
Q Consensus 81 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~g---w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~ 156 (362)
. ..|+|..+...++..+.. ..| ||..- .+..+..++ .+..++...|.++.+...++..
T Consensus 146 g-~GN~G~av~q~~~P~v~~-------~~g~~~w~~~~---------~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~- 207 (417)
T COG2223 146 G-AGNLGVAVAQLVAPLVAV-------AFGFLAWRNVA---------GIYVVALAIAAVLAWLGMNDVPEHRASVKPQL- 207 (417)
T ss_pred c-cccccHHHHHHHHHHHHH-------HHhhHHHHHHH---------HHHHHHHHHHHHHHHHHhCCChhhhccccccc-
Confidence 9 999999999999888887 666 65433 333333333 4455556666554322211111
Q ss_pred ccchhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHH
Q 041273 157 VSCDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQ 236 (362)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~ 236 (362)
+...+.++++++.|.+.+.|+..+..+.++...+|.|+++. ++.++.++|.
T Consensus 208 ------------------------~~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~-----fg~~~~~Ag~ 258 (417)
T COG2223 208 ------------------------PAQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQ-----FGLSPVTAGL 258 (417)
T ss_pred ------------------------hhHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCChhhHHH
Confidence 13566788999999999999999999999999999999887 8999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHhhhHHHH
Q 041273 237 VLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSG-FSLALLINCASVMKNVLSVSIMTGLFL 315 (362)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (362)
......+.+.+.+ ++.|+++||+|.+|.+......++++.....+.....+ ................+...-....+-
T Consensus 259 ~a~~f~~~g~l~R-p~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk 337 (417)
T COG2223 259 IAFLFPLIGALAR-PLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFK 337 (417)
T ss_pred HHHHHHHHHHHHH-hccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchhee
Confidence 9999999999998 99999999999999988888888777666554432111 011111111111111122222233444
Q ss_pred HHhhhccc------------cccCCCCCC----------C-hhHHHHHHHHHHHHHHHhhccccccc
Q 041273 316 LQNRAVSQ------------KRQGAGFLP----------G-NQMIFFILNLVEALGVILTFKPFLIQ 359 (362)
Q Consensus 316 ~~~~~~p~------------~~~~~~~~~----------g-~~~~f~~~~~~~~i~~~~~~~~~l~~ 359 (362)
++...+|+ +.-++.+.+ | ++..|+++..+.+++.++++..+..+
T Consensus 338 ~Ip~if~~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~r~ 404 (417)
T COG2223 338 MIPVIFPKETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYARR 404 (417)
T ss_pred echHHHHhhhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44454442 222333333 3 78899999999999998877644443
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-23 Score=191.70 Aligned_cols=310 Identities=20% Similarity=0.223 Sum_probs=216.9
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchh
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLS-----VSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTL 75 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~ 75 (362)
+.++++|.++||++|||+++.+.++.++.....++. .+.+.+++.-++.|++.+...|+ ++++.|.+|+|+..+
T Consensus 60 Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~ 139 (524)
T PF05977_consen 60 LLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPA 139 (524)
T ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHH
Confidence 457899999999999999999998887665554432 37889999999999999999999 999999999999999
Q ss_pred hHHHHHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHhhcccccCCCCcCCccc
Q 041273 76 GLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLHKHNEDGVSL 155 (362)
Q Consensus 76 ~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 155 (362)
++++.+...+++.++||.++|.+.. .+|-...| .+.++..++.+......+++.++.+.++++.
T Consensus 140 A~al~s~~~niar~iGPalgG~Lva-------~~G~~~~f---------~inalsfl~~i~~l~~~~~~~~~~~~~~e~~ 203 (524)
T PF05977_consen 140 ANALNSISFNIARIIGPALGGILVA-------FFGAAAAF---------LINALSFLISILALLRWKPPPPPSSLPRERF 203 (524)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHH-------HHHHHHHH---------HHHHHHHHHHHHHHHHccccccccccchhhh
Confidence 9999999999999999999999987 44443333 4444443333333344443222111111100
Q ss_pred cccchhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhH
Q 041273 156 DVSCDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAG 235 (362)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g 235 (362)
. ++.....+...++|.++..+...+++++.......++|.+..+. +|.++...|
T Consensus 204 ~---------------------~~l~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~-----l~~~a~~yG 257 (524)
T PF05977_consen 204 F---------------------SALREGLRYVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDV-----LGGGASGYG 257 (524)
T ss_pred h---------------------hhHHHHHHHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHH-----hCCcHHHHH
Confidence 0 01234455566677777766666666666666677788877665 788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHH
Q 041273 236 QVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMTGLFL 315 (362)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (362)
++.+..+++.++++ ++.+++.+|+++++.+..+.+..+++++.+++..+. |. ..+..++.+.+........++
T Consensus 258 ll~a~~gvGai~Ga-l~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~-----~~-~~~~l~l~G~~~~~~~~~~~t 330 (524)
T PF05977_consen 258 LLLAAFGVGAILGA-LLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSF-----WL-ALIALFLAGAAWIIANSSLNT 330 (524)
T ss_pred HHHHHHHHHHHHHH-HHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHH-----HH-HHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998 888999999999888888888777776666655432 22 222333334444555566677
Q ss_pred HHhhhccc---cccCCCCCC--------------------ChhHHHHHHHHHHHHHHHhhcccccccc
Q 041273 316 LQNRAVSQ---KRQGAGFLP--------------------GNQMIFFILNLVEALGVILTFKPFLIQR 360 (362)
Q Consensus 316 ~~~~~~p~---~~~~~~~~~--------------------g~~~~f~~~~~~~~i~~~~~~~~~l~~~ 360 (362)
..++..|+ +|..+.+.. |.+..+.+.+++.+++.++.+...+++.
T Consensus 331 ~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~~~l~~~ 398 (524)
T PF05977_consen 331 LVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALRFPLRQG 398 (524)
T ss_pred HHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 88888883 333222111 5567777777777777776665444443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.4e-23 Score=186.34 Aligned_cols=273 Identities=12% Similarity=0.130 Sum_probs=183.0
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTL 80 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~ 80 (362)
+++++.|+++||+|||+++..+.....++.+++.++++++.+++.|++.|++.+...+. ..+..|.+++++|+++++..
T Consensus 58 ~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (394)
T PRK11652 58 LSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLL 137 (394)
T ss_pred HHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 56889999999999999999999999999999999999999999999999998877777 88899999999999999999
Q ss_pred HHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHH-HHHHHhhcccccCCCCcCCccccccc
Q 041273 81 STAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFA-VTIASCWIPETLHKHNEDGVSLDVSC 159 (362)
Q Consensus 81 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~ 159 (362)
..+..++..++|.+++.+.+ ..|||..| .+.++..++ .+...++.||+++.+++++ +
T Consensus 138 ~~~~~~~~~~g~~i~~~l~~-------~~g~~~~f---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--- 195 (394)
T PRK11652 138 NMGILVSPLLAPLIGGLLTT-------LFGWRACY---------LFLLLLGAGVTFSMARWMPETRPADARRT---R--- 195 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHh-------ccChHHHH---------HHHHHHHHHHHHHHHHhCCccCccccchh---H---
Confidence 99999999999999999987 67887766 444444433 3334456777543221110 0
Q ss_pred hhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHHH
Q 041273 160 DALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLA 239 (362)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~ 239 (362)
.....++.+|+|+++...+..+........+....+.++.+. +|+++.+.+.+..
T Consensus 196 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~ 250 (394)
T PRK11652 196 --------------------VLASYRTLLSNRRFNCYLLMLIGTLAGIAVFEACSGVLMGAV-----LGLSSMTVSILFI 250 (394)
T ss_pred --------------------HHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHhChHHHHHH-----cCCCHHHHHHHHH
Confidence 123455677888777655544444333334444445555443 6889999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhh
Q 041273 240 ISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMTGLFLLQNR 319 (362)
Q Consensus 240 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (362)
...++..+++ ++.+++.||.+++... ......+..+.+...........+. ......+.+.+.....|.......+
T Consensus 251 ~~~~~~~~g~-~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~ 326 (394)
T PRK11652 251 LPIPAAFFGA-WFAGRPNKRFSTLMWQ--SVICCLLAGLLMWIPGWFGVMNVWT-LLVPAALFFFGAGMLFPLATSGAME 326 (394)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccccHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8777777776 8888899888733322 2222222222211111101011122 2222233333444456777777778
Q ss_pred hccccc
Q 041273 320 AVSQKR 325 (362)
Q Consensus 320 ~~p~~~ 325 (362)
..|+.+
T Consensus 327 ~~~~~~ 332 (394)
T PRK11652 327 PFPYLA 332 (394)
T ss_pred hccccc
Confidence 777433
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.4e-23 Score=182.79 Aligned_cols=267 Identities=11% Similarity=0.074 Sum_probs=185.8
Q ss_pred cccchhhhhhcccCCchHH----HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhh
Q 041273 2 LTSVLWGMVADRCGRKPVI----IIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLG 76 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l----~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~ 76 (362)
++++++|+++||+|||+.. ..+..+..+ ..+..+++++.+++.|+++|.+.+...|. .++..|. +++|+++
T Consensus 54 ~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~ 129 (382)
T TIGR00902 54 AGGLFFAPLIKDANHIIIALRLLALASAIFAA--AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLD 129 (382)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCC
Confidence 4678999999999985433 222222222 24456789999999999999987777777 7776554 5788999
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHhhcccccCCCCcCCcccc
Q 041273 77 LSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLHKHNEDGVSLD 156 (362)
Q Consensus 77 ~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 156 (362)
++......++|.+++|.+++.+.+ .+|||..| .+.....++.+ .....+|+++++++++++++
T Consensus 130 ~g~~~~~~slG~~~g~~l~g~l~~-------~~g~~~~f---------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 192 (382)
T TIGR00902 130 YGKVRLIGSAAFIIGSALFGGLIG-------MFDEQNIL---------AILTAGLAFML-IGFLIKPTIPPKDAIPEDES 192 (382)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH-------HcChhHHH---------HHHHHHHHHHH-HHHHcCCCCCCCcccccccc
Confidence 999999999999999999999998 78898776 33333322222 22334443221111100000
Q ss_pred ccchhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHH
Q 041273 157 VSCDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQ 236 (362)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~ 236 (362)
+..++.++++|||+++...+..++.......+..+.|.|+.+ .|.++.+.|.
T Consensus 193 ----------------------~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~------~g~s~~~~g~ 244 (382)
T TIGR00902 193 ----------------------QGDSAFIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQA------AGISASATGL 244 (382)
T ss_pred ----------------------ccchhHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------CCCCHhHHHH
Confidence 012345678899999998888888777777787888888754 5899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 041273 237 VLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMTGLFLL 316 (362)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (362)
+.+...+..++.. +..+++.||+++|+.+..+.+...+....+++.++. + .......+.+..-....+....+
T Consensus 245 l~~~~~~~~i~~~-~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~-----~-~~~~~q~l~g~~~~~~~~~~~~~ 317 (382)
T TIGR00902 245 LWGIGVLAEIIIF-AFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAF-----P-LIFLLQILHCGTFAVCHLAAMRY 317 (382)
T ss_pred HHHHHHHHHHHHH-HHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhH-----H-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998777777776 889999999999999999998888887776554422 2 22233344444555556777778
Q ss_pred Hhhhccccc
Q 041273 317 QNRAVSQKR 325 (362)
Q Consensus 317 ~~~~~p~~~ 325 (362)
+++. |+++
T Consensus 318 i~~~-~~~~ 325 (382)
T TIGR00902 318 IAAQ-PGSE 325 (382)
T ss_pred HHhC-CHhh
Confidence 8877 6433
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-22 Score=181.46 Aligned_cols=295 Identities=15% Similarity=0.181 Sum_probs=176.2
Q ss_pred cchhhhhhcccCCchHH-HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccc--hhhHHH
Q 041273 4 SVLWGMVADRCGRKPVI-IIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHK--TLGLST 79 (362)
Q Consensus 4 ~~~~G~l~Dr~Grr~~l-~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r--~~~~~~ 79 (362)
+++.|.++||+||||.+ ..+.+..+++..+.+++++++.+++.+.+.|...+...|. .+++.|+.++++| +...+.
T Consensus 68 ~~~~~~~~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (393)
T PRK15011 68 SQFLAGRSDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSF 147 (393)
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHH
Confidence 34444559999999875 5566666677788889999998876665555444455666 8888888776655 344578
Q ss_pred HHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHH-HHHHhhcccccCCCCcCCcccccc
Q 041273 80 LSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAV-TIASCWIPETLHKHNEDGVSLDVS 158 (362)
Q Consensus 80 ~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~ 158 (362)
.+.+.++|.++||++++.+.+ ++|||..| +..++..++. +.....+||+++++++++++.+
T Consensus 148 ~~~~~~lg~~~g~~i~~~l~~-------~~gw~~~f---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 209 (393)
T PRK15011 148 LRAQVSLAWVIGPPLAYALAM-------GFSFTVMY---------LSAAVAFIVCGVMVWLFLPSMRKELPLATGTLE-- 209 (393)
T ss_pred HHHHHHHHHHHhhHHHHHHHH-------hcChHHHH---------HHHHHHHHHHHHHHHhhcCccCCCCcccccccc--
Confidence 889999999999999999998 78898777 5555555443 3444567876433221100000
Q ss_pred chhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHH
Q 041273 159 CDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVL 238 (362)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~ 238 (362)
..++ +++..+...............+....|.|+++. +|+++.+.+.+.
T Consensus 210 ------------------------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~~~~~~~~g~~~ 258 (393)
T PRK15011 210 ------------------------APRR--NRRDTLLLFVICTLMWGTNSLYIINMPLFIINE-----LHLPEKLAGVMM 258 (393)
T ss_pred ------------------------cccc--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCHHHHHHHH
Confidence 0000 112222233333333333444445677777554 688999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHh
Q 041273 239 AISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMTGLFLLQN 318 (362)
Q Consensus 239 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (362)
+...+..+++. ++.+++.||+++|+.+..+.....+........+ +..... ....+..+......+......+
T Consensus 259 ~~~~~~~i~~~-~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l---~~~~l~~~~~g~~~~~~~~~~~ 331 (393)
T PRK15011 259 GTAAGLEIPTM-LIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAH---SPAILL---GLQLLNAIYIGILGGIGMLYFQ 331 (393)
T ss_pred HHHHHHHHHHH-HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHh---hHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777776 8999999999999987766554444332222111 111111 1111111111122233455667
Q ss_pred hhccccccCCCCC----------------------CChhHHHHHHHHHHHHHHHhhcc
Q 041273 319 RAVSQKRQGAGFL----------------------PGNQMIFFILNLVEALGVILTFK 354 (362)
Q Consensus 319 ~~~p~~~~~~~~~----------------------~g~~~~f~~~~~~~~i~~~~~~~ 354 (362)
|..|++|...... .|++.+|.+.+++.+++.+..++
T Consensus 332 ~~~p~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK15011 332 DLMPGQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLR 389 (393)
T ss_pred HhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 7777544311100 04667777777777777666554
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-23 Score=212.00 Aligned_cols=284 Identities=15% Similarity=0.068 Sum_probs=195.9
Q ss_pred cccchhhhhhcccCCchHHHH---HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhH
Q 041273 2 LTSVLWGMVADRCGRKPVIII---GCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGL 77 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~---~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~ 77 (362)
+.++++|+++||+|||+++.. ..+...+........+++++++++|+++|++.+...|+ .+++.|++|+++|++++
T Consensus 67 l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~ 146 (1140)
T PRK06814 67 IFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGAN 146 (1140)
T ss_pred HHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhh
Confidence 567899999999999997643 22233333333344589999999999999999999888 99999999999999999
Q ss_pred HHHHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHhhcccccCCCCcCCccccc
Q 041273 78 STLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLHKHNEDGVSLDV 157 (362)
Q Consensus 78 ~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 157 (362)
++.+.+.++|.++||++++++.+ ..+|+..| ....+..++.++..+.+|++++.....+.+..
T Consensus 147 ~~~~~~~~ig~~igp~l~g~l~~-------~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 209 (1140)
T PRK06814 147 ALVEAGTFIAILLGTIIGGLATI-------SGNFVILV---------ALLMGIAVLGWLASLFIPKTGNAAPDLKIDRN- 209 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-------ccccHHHH---------HHHHHHHHHHHHHHhhCCCCCCCCCCCeeccc-
Confidence 99999999999999999999998 67776554 34444444455555667765432211111000
Q ss_pred cchhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHH
Q 041273 158 SCDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQV 237 (362)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~ 237 (362)
.. ++.....+.+.+++.++...+..++.++.......++|.|+.+. +|.++.+.|.+
T Consensus 210 ~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-----~g~~~~~~g~~ 266 (1140)
T PRK06814 210 II------------------RSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKET-----LGGDENVATLF 266 (1140)
T ss_pred hH------------------HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----cCCchHHHHHH
Confidence 00 01123566778899999888887777777777777888888765 78899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHH---------------hhhhhhHHHHHHHHHHHH
Q 041273 238 LAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIA---------------MLSGFSLALLINCASVMK 302 (362)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~ 302 (362)
++..+++.++++ ++.+++.|+..+++.+..+.++..+..+.+.+.. .......|.. .+..++.
T Consensus 267 ~~~~~~g~~ig~-~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 344 (1140)
T PRK06814 267 LAVFSVGVAVGS-FLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRI-LIDLFGL 344 (1140)
T ss_pred HHHHHHHHHHHH-HHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHH-HHHHHHH
Confidence 999999999998 8889999877766655555555444433333210 0000112222 2233333
Q ss_pred HHHHHHhhhHHHHHHhhhccccccC
Q 041273 303 NVLSVSIMTGLFLLQNRAVSQKRQG 327 (362)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~p~~~~~ 327 (362)
+++.....+...+++.+.+|.+..+
T Consensus 345 g~~~~~~~~~~~~~~~~~~p~~~~G 369 (1140)
T PRK06814 345 AAAGGLYIVPLFAALQAWANPAHRA 369 (1140)
T ss_pred HHHHHHhHHHHHHHHHhhCCcccce
Confidence 3444555566788888888854443
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.7e-29 Score=227.88 Aligned_cols=341 Identities=17% Similarity=0.245 Sum_probs=212.6
Q ss_pred CcccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhh
Q 041273 1 ALTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSV---SFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLG 76 (362)
Q Consensus 1 ~i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~---~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~ 76 (362)
.+|+++.|+++||+|||+.+..+.++..++.++.++++ |++.+.++|+++|++.|...+. ..++.|..|+++|++.
T Consensus 60 ~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~ 139 (451)
T PF00083_consen 60 IVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFL 139 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 37899999999999999999999999999999999999 9999999999999999987777 9999999999999999
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHhhcccccCCCCcCCcccc
Q 041273 77 LSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLHKHNEDGVSLD 156 (362)
Q Consensus 77 ~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 156 (362)
.++.+....+|..++..++....+.. +..+||..+ ...++++++.++...++||+|++...++++++
T Consensus 140 ~~~~~~~~~~G~~~~~~~~~~~~~~~----~~~~Wr~~~---------~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~ 206 (451)
T PF00083_consen 140 SSLFQLFWALGILLASLIGYIVSYYS----DNWGWRILL---------IFGAIPSLLVLLLRFFLPESPRWLLSKGRDEE 206 (451)
T ss_pred cccccccccccccccccccccccccc----ccccccccc---------cccccccccccccccccccccceecccccccc
Confidence 99999999999999888876554311 124477665 56666666666677889999999755544433
Q ss_pred ccchhhhh---hcCCCCccccccCc-----ccchhhhcccccchhHH-HHHHHHHHHHHHhHHHHHHHhHhccccccccc
Q 041273 157 VSCDALES---ACGSNAEFKQDEGS-----EEATAKKSLMKNWPFIS-STIVYCVFSLHDIAYTEIFSLWAISPWKYGGL 227 (362)
Q Consensus 157 ~~~~~~~~---~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (362)
..+.+++ ....+++.+++.++ +.+...++++++++.+. ......+..............|.. ...+..
T Consensus 207 -A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~--~i~~~~ 283 (451)
T PF00083_consen 207 -AEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSP--SIFENA 283 (451)
T ss_pred -cccccccccccccccccccccccccccccccceeeeecccccccccccccccccccccccccccccccccc--cccccc
Confidence 3333333 21212222111111 11134667777754222 222222222221111111112211 112224
Q ss_pred CCCch-hhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH--HHHhhhh--hhHHHHHHHHHHHH
Q 041273 228 SYSTE-NAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYT--YIAMLSG--FSLALLINCASVMK 302 (362)
Q Consensus 228 g~s~~-~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~ 302 (362)
+.+.. ... ...++...++. ++...+.||+|||+.+..+.....++.+.+. ....... ..............
T Consensus 284 ~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~ 359 (451)
T PF00083_consen 284 GISNSFLAT---LILGLVNFLGT-LLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFF 359 (451)
T ss_pred ccccccccc---ccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccceeeeecc
Confidence 55555 222 22233344443 5556899999999999888888777765554 1111111 01122222222222
Q ss_pred HHHHHHhhhHHHHHHhhhccc-cccCCCC------------CC----------ChhHHHHHHHHHHHHHHHhhccccccc
Q 041273 303 NVLSVSIMTGLFLLQNRAVSQ-KRQGAGF------------LP----------GNQMIFFILNLVEALGVILTFKPFLIQ 359 (362)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~p~-~~~~~~~------------~~----------g~~~~f~~~~~~~~i~~~~~~~~~l~~ 359 (362)
...+.+..+..+.+..|.+|+ .|..+.. .+ +....|.+.+++++++.++.+. ++||
T Consensus 360 ~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~-~lpE 438 (451)
T PF00083_consen 360 AFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYF-FLPE 438 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeE-EEee
Confidence 234445567777888999993 2221110 00 2256778888888888877764 8999
Q ss_pred cCC
Q 041273 360 RAT 362 (362)
Q Consensus 360 ~~~ 362 (362)
+|+
T Consensus 439 T~g 441 (451)
T PF00083_consen 439 TKG 441 (451)
T ss_pred CCC
Confidence 875
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.5e-23 Score=209.45 Aligned_cols=290 Identities=17% Similarity=0.082 Sum_probs=195.8
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHh---hhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFG---LSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGL 77 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~---~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~ 77 (362)
++++++|+++||+|||++++.+.++.++..++.. .+++++.+++.|+++|++.+...+. .+++.|++|+++|++++
T Consensus 62 l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~ 141 (1146)
T PRK08633 62 LLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRAN 141 (1146)
T ss_pred HHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhh
Confidence 5788999999999999999998877666555443 4578999999999999999998888 99999999999999999
Q ss_pred HHHHHhhhhhhhhhhhhhhhhcCccc-cCCcccccccccccccchhhHHHHHHHHHHHHHHHhhcccccCCCCcCCcccc
Q 041273 78 STLSTAWGTGLIIGPAVGGFLAQPAE-KYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLHKHNEDGVSLD 156 (362)
Q Consensus 78 ~~~~~~~~~g~~~g~~~~~~l~~~~~-~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 156 (362)
++.+.+.++|.++|+.+++++.+... ..+..++|. ++..........++.++..+.+||+++....+.+..+
T Consensus 142 ~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (1146)
T PRK08633 142 GLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGR-------IAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVFDKKK 214 (1146)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccccccccccc-------hHHHHHHHHHHHHHHHHHHhcCcCCCCCCcccccccc
Confidence 99999999999999999999986100 000001111 1111122223333344445567776544322110000
Q ss_pred ccchhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCch-hhH
Q 041273 157 VSCDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTE-NAG 235 (362)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~-~~g 235 (362)
...........+.+++++.++...+..++...........+|.|+... +|++.. +.|
T Consensus 215 -----------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~~g 272 (1146)
T PRK08633 215 -----------------YLFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEV-----LGLDNTFQVQ 272 (1146)
T ss_pred -----------------cccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-----hCCCcHHHHH
Confidence 000001223456677888888777766666665556666777777655 688888 899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHH
Q 041273 236 QVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMTGLFL 315 (362)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (362)
++.+..+++.++++ ++.+++.||.++++.+.++.++.+++.+.+.+... .+ ...+..++.+++.....+...+
T Consensus 273 ~~~~~~~ig~~~g~-~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~g~~~~~~~~~~~~ 345 (1146)
T PRK08633 273 YLLAASAIGIGIGS-LLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPS-----LA-SVLVLFFLFGFSAGLFIVPLNA 345 (1146)
T ss_pred HHHHHHHHHHHHHH-HHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhh-----HH-HHHHHHHHHHHHHHHhhHHHHH
Confidence 99999999988887 89999999999888887777776666655544431 11 1222233333344444566678
Q ss_pred HHhhhccccccC
Q 041273 316 LQNRAVSQKRQG 327 (362)
Q Consensus 316 ~~~~~~p~~~~~ 327 (362)
++.+..|.++.+
T Consensus 346 ~~~~~~p~~~rg 357 (1146)
T PRK08633 346 LIQFRAPEKELG 357 (1146)
T ss_pred HHhhcCCccchh
Confidence 888888855443
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.5e-23 Score=186.34 Aligned_cols=252 Identities=15% Similarity=0.079 Sum_probs=198.2
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTL 80 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~ 80 (362)
++.+++|.+.||++-.+.+....+.+++..++....+|++.+++.|++.|+.++...|+ ..+++.|+.++||+..++++
T Consensus 96 i~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~ 175 (495)
T KOG2533|consen 96 IGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIW 175 (495)
T ss_pred HHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHH
Confidence 68899999999999999999999999998888888999999999999999999999999 99999999999999999999
Q ss_pred HHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHH-HHHHHhhcccccCCCCcCCccccc-c
Q 041273 81 STAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFA-VTIASCWIPETLHKHNEDGVSLDV-S 158 (362)
Q Consensus 81 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~-~ 158 (362)
.+..++|+++|.+++..+.+ ..+.....|||+.| ++.+++.+. .++..+++|++|.+..-.+++++. .
T Consensus 176 ~a~~~~g~i~ggliA~g~~~-~~~~~~~~gW~~~F---------iI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~ 245 (495)
T KOG2533|consen 176 YASASLGNIFGGLIAYGVFK-LNGSGGLAGWRWLF---------IIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELV 245 (495)
T ss_pred HHhcchhhHHHHHHHHHhhh-hcCCCCcCCceeeh---------hHHHHHHHHHHheEEEEecCChhhccccchHHHHHH
Confidence 99999999999999998754 22223378999988 666666665 556667899988754222222210 1
Q ss_pred chhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHH
Q 041273 159 CDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVL 238 (362)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~ 238 (362)
.++.++... ....++......++.+++|+++...+..++......++.++.|.++.+. .|+|..++..+.
T Consensus 246 ~~~~~~~~~-----~~~~~~~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~-----~~~s~~~a~~ls 315 (495)
T KOG2533|consen 246 VERLRESPS-----GGIENKFKWKGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSN-----GGYSELQANLLS 315 (495)
T ss_pred HHHHHhccC-----CCcccccCHHHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcC-----CCcChHHhcccc
Confidence 111111111 0111114556788999999999999999999999999999999999773 689999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHh----hchhHHHHHHHHHHH
Q 041273 239 AISGFSLLVFQLTLYPYVERM----IGPIIITRIAGVLSI 274 (362)
Q Consensus 239 ~~~~~~~~~~~~~~~~~l~~~----~g~~~~~~~~~~~~~ 274 (362)
....++++++. ++.+.++|| ..+|........+..
T Consensus 316 ~~~~~~g~v~~-i~ag~lsdr~~~~~~~~~~~~~~~~~~~ 354 (495)
T KOG2533|consen 316 TPYDVGGIVGL-ILAGYLSDRLKTIFARRLLFIVFLCLYA 354 (495)
T ss_pred chHHhhhHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 99999999997 999999999 445544444444433
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.7e-25 Score=189.03 Aligned_cols=225 Identities=15% Similarity=0.122 Sum_probs=162.9
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTL 80 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~ 80 (362)
+.+|+.|+++||++||+++.+|..++.++.++++++..||++.+.|-+.|+|.+.+.|. +++++|.+|+++|+++++++
T Consensus 83 i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~if 162 (493)
T KOG1330|consen 83 IASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIF 162 (493)
T ss_pred HHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHh
Confidence 57899999999999999999999999999999999999999999999999999999998 99999999999999999999
Q ss_pred HHhhhhhhhhhhhhhhhhcCccccCCcccc-cccccccccchhhHHHHHHHHHH-HHHHHhhcccccCCCCcCCcccccc
Q 041273 81 STAWGTGLIIGPAVGGFLAQPAEKYPKAFS-KESMFGKFPYFLPCLCMSLFAFA-VTIASCWIPETLHKHNEDGVSLDVS 158 (362)
Q Consensus 81 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~g-w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~ 158 (362)
+....+|..+|.+.+..+.+ ..+ ||+.| ...+++.++ .++..++.+|.++...++.+.+..
T Consensus 163 y~~ipvGsglG~vvgs~va~-------~~~~Wr~af---------~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~- 225 (493)
T KOG1330|consen 163 YFAIPVGSGLGYVVGSVVAS-------LTFWWRWAF---------RGSAVLGVIVGLLVFLFVREPERGARDEVDGENK- 225 (493)
T ss_pred hhhcccccceeEEeeeeecc-------CccceEEEE---------EeehHHHHHHHHHHHhhccCcccccccccccCCc-
Confidence 99999999999999999987 444 66665 345555555 344455666655432222111110
Q ss_pred chhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHH
Q 041273 159 CDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVL 238 (362)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~ 238 (362)
.........++.+.+.|++.+....+.+....+...++.-+.|.+....... .|.+..+.-++.
T Consensus 226 --------------~~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~--~~~~~~~~~ifg 289 (493)
T KOG1330|consen 226 --------------MVKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYEL--IGFDHNATLIFG 289 (493)
T ss_pred --------------CCCCccchHHHHHHHHccCceeeehHHHHHHHHhccccchhhhhHHHHHHHH--hCCccccchhhh
Confidence 0111122345666677778777777777776666666665666655443222 244555544555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 041273 239 AISGFSLLVFQLTLYPYVERMI 260 (362)
Q Consensus 239 ~~~~~~~~~~~~~~~~~l~~~~ 260 (362)
.+...++.++. ..++.++||+
T Consensus 290 ~vt~~~G~lGv-l~Ggiisd~~ 310 (493)
T KOG1330|consen 290 GVTCAGGSLGV-LFGGIISDKL 310 (493)
T ss_pred hHHHhhchhhh-eehHHHHHHH
Confidence 55555666664 6667777763
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=180.54 Aligned_cols=230 Identities=17% Similarity=0.110 Sum_probs=167.4
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTL 80 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~ 80 (362)
+++++.|+++||+|||+++..+.+...++.+.+ .+++++.+++.|++.|++.+...+. ..++.|++| ++|+++++..
T Consensus 50 ~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 127 (355)
T TIGR00896 50 VLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLY 127 (355)
T ss_pred HHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHH
Confidence 578899999999999999999998888888877 7789999999999999998876666 778888886 6899999999
Q ss_pred HHhhhhhhhhhhhhhhhhcCccccCCccc--ccccccccccchhhHHHHHHHHHHHHHHHhhcccccCCCCcCCcccccc
Q 041273 81 STAWGTGLIIGPAVGGFLAQPAEKYPKAF--SKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLHKHNEDGVSLDVS 158 (362)
Q Consensus 81 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~--gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 158 (362)
+...++|..+++.+++.+.+ .. +||..| ...++..++. ...++||.++++++++ .+
T Consensus 128 ~~~~~~g~~i~~~~~~~l~~-------~~~~~w~~~f---------~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~-- 185 (355)
T TIGR00896 128 SMALMGGAALAAAATVPLAQ-------HSGGHWQQAL---------AWWALPALLA--LLAWIPQVRRRVAANQ--TT-- 185 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------hhhhhHHHHH---------HHHHHHHHHH--HHHHhhhhccccCCCC--CC--
Confidence 99999999999999998876 33 266554 3333222222 2233454432211100 00
Q ss_pred chhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHH
Q 041273 159 CDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVL 238 (362)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~ 238 (362)
.....++.+|+|.++...+...+..........++|.|+.+ .|+++.+.+...
T Consensus 186 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~------~g~~~~~~g~~~ 238 (355)
T TIGR00896 186 ---------------------TRLTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILIS------HGASAATAGSLL 238 (355)
T ss_pred ---------------------CCCCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHH
Confidence 01234566788888776666665555566666778877754 588999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc-hhHHHHHHHHHHHHHHHHHHHH
Q 041273 239 AISGFSLLVFQLTLYPYVERMIG-PIIITRIAGVLSIPLLTSYTYI 283 (362)
Q Consensus 239 ~~~~~~~~~~~~~~~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~ 283 (362)
+..+++.++++ +..+++.||++ +|+....+..+..++...+.+.
T Consensus 239 ~~~~~~~i~~~-~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (355)
T TIGR00896 239 ALMQLAQAASA-LLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFA 283 (355)
T ss_pred HHHHHHHHHHH-HhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHh
Confidence 99999999998 89999999994 5556666666666665555443
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.5e-22 Score=178.85 Aligned_cols=265 Identities=12% Similarity=0.100 Sum_probs=177.3
Q ss_pred cccchhhhhhcccCCc----hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhh
Q 041273 2 LTSVLWGMVADRCGRK----PVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLG 76 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr----~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~ 76 (362)
++++++|+++||+||| +.+.+..... .......++++|.+++.|++.|++.+...|. .+++.|+ +++|+++
T Consensus 54 l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a 129 (382)
T PRK11128 54 LGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLD 129 (382)
T ss_pred hhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCC
Confidence 4688899999999994 3333222221 2233445688999999999999988887777 7777766 4568889
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHhhcccccCCCCcCCcccc
Q 041273 77 LSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLHKHNEDGVSLD 156 (362)
Q Consensus 77 ~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 156 (362)
++......++|..+||.+++++.+ ++|||..| +..++..++..+.....||++++.++ +++ .
T Consensus 130 ~~~~~~~~~lg~~igp~lgg~l~~-------~~g~~~~f---------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~ 191 (382)
T PRK11128 130 YGKVRLWGSIAFVIGSALTGKLVS-------WFGEQAIL---------WILTAGVASMLLGQLLRPTIMPQGES-RQQ-E 191 (382)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHH-------HcChhHHH---------HHHHHHHHHHHHHHHccCCCCCcccc-ccc-c
Confidence 999999999999999999999998 78888766 44443333333333344443221110 000 0
Q ss_pred ccchhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHH
Q 041273 157 VSCDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQ 236 (362)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~ 236 (362)
++...+.++++|+|+++...+..++............|.|..+ .|+++.+.|.
T Consensus 192 ---------------------~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~------~g~s~~~~g~ 244 (382)
T PRK11128 192 ---------------------SAGWPAWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQA------AGYSASTIGY 244 (382)
T ss_pred ---------------------ccccchHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHHHH------CCCCHhHHHH
Confidence 0012356788999999888777777666666666677777643 5889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 041273 237 VLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMTGLFLL 316 (362)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (362)
+.+...+...+.. +..+++.||+++|+.+..+.....+..+.+.+.++ .+. ..+...+.++......+....+
T Consensus 245 ~~~~~~~~~~~~~-~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~l~g~~~~~~~~~~~~~ 317 (382)
T PRK11128 245 LWSLGVVAEVLIF-AFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTA-----LPW-LIVIQILHCGTFTVCHLAAMRY 317 (382)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhh-----HHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888777776 88999999999999988888877776655544332 222 1222333333333345556666
Q ss_pred Hhhhcc
Q 041273 317 QNRAVS 322 (362)
Q Consensus 317 ~~~~~p 322 (362)
..+..|
T Consensus 318 ~~~~~~ 323 (382)
T PRK11128 318 IAARPG 323 (382)
T ss_pred HHHCCH
Confidence 666544
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.6e-22 Score=177.91 Aligned_cols=277 Identities=11% Similarity=0.101 Sum_probs=189.5
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGL---SVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGL 77 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~ 77 (362)
+++++.|++.||+|||+++..+.++.+++..++.. .++++.+++.|++.|++.|...+. ..++.+..|+++|++.+
T Consensus 53 i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~ 132 (410)
T TIGR00885 53 IMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRL 132 (410)
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHH
Confidence 56889999999999999999999999999888654 458999999999999999988776 99999999999999999
Q ss_pred HHHHHhhhhhhhhhhhhhhhhcCccccC-------------------CcccccccccccccchhhHHHHHHHHHHHHHHH
Q 041273 78 STLSTAWGTGLIIGPAVGGFLAQPAEKY-------------------PKAFSKESMFGKFPYFLPCLCMSLFAFAVTIAS 138 (362)
Q Consensus 78 ~~~~~~~~~g~~~g~~~~~~l~~~~~~~-------------------~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (362)
+..+...++|..+||.+++.+.....+. .+..+||..| ++.+++.++..+..
T Consensus 133 ~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~f---------l~~a~~~~~~~~~~ 203 (410)
T TIGR00885 133 NLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPY---------MIIGAVVLAVALLI 203 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHH
Confidence 9999999999999999999886421000 0123455544 55555444433333
Q ss_pred hh--cccccCCCCcCCccccccchhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHh
Q 041273 139 CW--IPETLHKHNEDGVSLDVSCDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSL 216 (362)
Q Consensus 139 ~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (362)
.+ .||.++ ++ +++.+ ...+.++++|+|+++...+..+++.....+..++++.
T Consensus 204 ~~~~~p~~~~--~~-~~~~~-----------------------~~~~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~ 257 (410)
T TIGR00885 204 MLTKMPALNH--SD-AKQIS-----------------------FSASLSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQ 257 (410)
T ss_pred HHhcCCCCCc--cc-ccccc-----------------------chhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 333211 00 00000 1123446788899888888777777777667777777
Q ss_pred HhcccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 041273 217 WAISPWKYGGLSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLIN 296 (362)
Q Consensus 217 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (362)
|..+. +.+.+....+...+.......+++ ++.+++.||+++|+.+.+......+..++..+..... ..
T Consensus 258 y~~~~----~~~~~~~~a~~~~~~~~~~~~vGR-~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~---~~---- 325 (410)
T TIGR00885 258 YAVRL----IPGMTAGFAANYNIGAMVIFFISR-FIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHV---GL---- 325 (410)
T ss_pred HHhhc----cCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH---HH----
Confidence 76442 123344444545555556667777 8899999999999988888777777666655433211 11
Q ss_pred HHHHHHHHHHHHhhhHHHHHHhhhccccc
Q 041273 297 CASVMKNVLSVSIMTGLFLLQNRAVSQKR 325 (362)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 325 (362)
......+.+....+|..+++..+..+++.
T Consensus 326 ~~l~~~glf~s~~fp~i~sl~~~~~g~~~ 354 (410)
T TIGR00885 326 YCLTLCSAFMSLMFPTIYGIALKGLGQDT 354 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 12222223455566888888888887544
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-23 Score=195.25 Aligned_cols=269 Identities=15% Similarity=0.118 Sum_probs=189.8
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhh-------------------------------------------
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSV------------------------------------------- 38 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~------------------------------------------- 38 (362)
+++++.|+++||+|||+.+.++.++++++++++++.+
T Consensus 83 ~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~ 162 (633)
T TIGR00805 83 LLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSEC 162 (633)
T ss_pred HHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCcccccccccc
Confidence 5678999999999999999999999999999988763
Q ss_pred --------hHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHHHHhhhhhhhhhhhhhhhhcCccccCC---
Q 041273 39 --------SFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYP--- 106 (362)
Q Consensus 39 --------~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~--- 106 (362)
.+..++++|+++|+|.+...+. .+++.|++|+++|++++++++....+|..+|+++++++.+...++.
T Consensus 163 ~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~ 242 (633)
T TIGR00805 163 QKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVN 242 (633)
T ss_pred ccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCC
Confidence 2456788999999999998888 9999999999999999999999999999999999999886322110
Q ss_pred ------cccccccccccccchhhHHHHHHHHHHHHHHHhhcccccCCCCcCCccccccchhhhhhcCCCCccccccCccc
Q 041273 107 ------KAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLHKHNEDGVSLDVSCDALESACGSNAEFKQDEGSEE 180 (362)
Q Consensus 107 ------~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (362)
...+||| ...|+..+++.+++.++..+.++.+|++.+....+.+.+....+..++..+..+....+..++.
T Consensus 243 ~~~~~l~~~dprW---iGaWwl~Fli~g~l~~l~~v~l~~~p~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (633)
T TIGR00805 243 TEDVILTPTDPRW---IGAWWIGFLICGGVALLTSIPFFFFPKALPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDF 319 (633)
T ss_pred CCCCCCCCCCccH---HHHHHHHHHHHHHHHHHHHHHHHhCccccCCcccccchhhhhhhcccccccccchhhhhhHHHH
Confidence 0011222 1135666677777766655556677765443211110000000000000000000000011122
Q ss_pred chhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHHHHHHHH-HHHHHHHHHHHHHHh
Q 041273 181 ATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLAISGFS-LLVFQLTLYPYVERM 259 (362)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~-~~~~~~~~~~~l~~~ 259 (362)
....++++|||.++...+..++......++..++|.|+++. +|+++.+++.+.....+. .+++. ++.+++.||
T Consensus 320 ~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~-----~g~s~~~ag~l~~~~~i~~~~vG~-~l~G~l~~r 393 (633)
T TIGR00805 320 PKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPKYLENQ-----YGISSAEANFLIGVVNLPAAGLGY-LIGGFIMKK 393 (633)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCcHHHHHHHhhhhhhhHHHHHH-hhhhheeee
Confidence 34567899999999999998888888888889999999876 799999999998887764 45555 899999999
Q ss_pred hc--hhHHHHHHHHHHHHHHHH
Q 041273 260 IG--PIIITRIAGVLSIPLLTS 279 (362)
Q Consensus 260 ~g--~~~~~~~~~~~~~~~~~~ 279 (362)
++ .|+.+..+.++..++.+.
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~ 415 (633)
T TIGR00805 394 FKLNVKKAAYFAICLSTLSYLL 415 (633)
T ss_pred ecccHHHHHHHHHHHHHHHHHH
Confidence 87 556677676666665443
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.9e-22 Score=178.54 Aligned_cols=308 Identities=13% Similarity=0.096 Sum_probs=178.8
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHh---hhh-----hHHHHHHHHHHHhhhcCcchhH-HHHHHhhhcccc
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFG---LSV-----SFWMAIATRFLLGALNGLLGPI-KAYACEILRDQH 72 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~---~~~-----~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~ 72 (362)
+++++.|+++||+|||++++++....+++..... .++ .+....+.++..|.+.....+. ..+..+ . .++
T Consensus 61 i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~ 138 (420)
T PRK09528 61 LFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER-V-SRR 138 (420)
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH-H-Hhh
Confidence 5789999999999999999887666554433221 111 1111222333334333333333 333222 2 345
Q ss_pred chhhHHHHHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHhhcccccCCCCcCC
Q 041273 73 KTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLHKHNEDG 152 (362)
Q Consensus 73 r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 152 (362)
+++.++......++|..++|.+++.+.+ .+|+..| +..++..++.+...+..+++++++++++
T Consensus 139 ~g~~~g~~~~~~~~g~~i~~~~~g~l~~--------~~~~~~f---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (420)
T PRK09528 139 SGFEYGRARMWGSLGWALCAFIAGILFN--------INPQINF---------WLGSGSALILLVLLFFAKPDAPSTAKVA 201 (420)
T ss_pred ccccchhhHHhhhHHHHHHHHHHHHHHh--------cCchHhH---------HHHHHHHHHHHHHHhcccccccchhhhc
Confidence 6788899999999999999999999875 3666555 5555555544444444433322211110
Q ss_pred ccccccchhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCch
Q 041273 153 VSLDVSCDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTE 232 (362)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ 232 (362)
++++ +++++...++.++.+|||+++...+...............+|.|..+.. .+.+.+..
T Consensus 202 ~~~~-----------------~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 262 (420)
T PRK09528 202 NALG-----------------ANASAVSLKDALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFF--ATPEQGTR 262 (420)
T ss_pred cchh-----------------cccccccHHHHHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHH--hccCcchH
Confidence 0000 0000112234556788888776555444444333344445666654431 11356677
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhH
Q 041273 233 NAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMTG 312 (362)
Q Consensus 233 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (362)
+.|.+.++..+...++. +..+++.||+++|+.+..+..+..+...++++..+ .+.. .....+.+.......+.
T Consensus 263 ~~g~~~~~~~~~~~~~~-~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~-----~~~~-~~~~~l~g~~~~~~~~~ 335 (420)
T PRK09528 263 VFGYLNSFQVFLEALIM-FFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATG-----PLEV-SILKLLHAFEVPFLLVG 335 (420)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhccc-----HHHH-HHHHHHHHHHHHHHHHH
Confidence 88999998888888887 89999999999999988888877776666554332 1111 12222222233333345
Q ss_pred HHHHHhhhccccccCCCC-C-----------------------CChhHHHHHHHHHHHHHHHhhcc
Q 041273 313 LFLLQNRAVSQKRQGAGF-L-----------------------PGNQMIFFILNLVEALGVILTFK 354 (362)
Q Consensus 313 ~~~~~~~~~p~~~~~~~~-~-----------------------~g~~~~f~~~~~~~~i~~~~~~~ 354 (362)
...++++..|++..+..+ . .|++.+|.+.+++.+++.++.+.
T Consensus 336 ~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~ 401 (420)
T PRK09528 336 VFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVF 401 (420)
T ss_pred HHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHH
Confidence 556777777754443221 0 05788888888888877766654
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.4e-23 Score=172.10 Aligned_cols=237 Identities=14% Similarity=0.158 Sum_probs=179.5
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccc-cchhhHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQ-HKTLGLST 79 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~-~r~~~~~~ 79 (362)
+.+++.|.+.||+|+|-.+++|...+..+++++++.++++.++++|.+||+|.+...++ .++++|.+|+| +|++++|.
T Consensus 121 lvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGi 200 (464)
T KOG3764|consen 121 LVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGI 200 (464)
T ss_pred HhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999888 99999999954 68999999
Q ss_pred HHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHhh-cccccCCCCcCCcccccc
Q 041273 80 LSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCW-IPETLHKHNEDGVSLDVS 158 (362)
Q Consensus 80 ~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~ 158 (362)
...+.++|..+||++||++.+ ..| +..|+++.+.++++-..+.++ ++.++.++++. +
T Consensus 201 algfislG~lvgPpfGGilYe-------~~G---------k~aPFlVL~~v~Lld~~L~l~vi~p~~~~~~~~-~----- 258 (464)
T KOG3764|consen 201 ALGFISLGVLVGPPFGGILYE-------FAG---------KSAPFLVLAIVLLLDGALQLLVIEPTEMDPDST-E----- 258 (464)
T ss_pred HHHHHhccceecCCcccchHh-------hcC---------CcCcHHHHHHHHHHHHHHHHheeCccccCcccc-c-----
Confidence 999999999999999999998 444 345557888877774444444 44333222111 1
Q ss_pred chhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHH
Q 041273 159 CDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVL 238 (362)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~ 238 (362)
+..+.++++++|..+.........+.......-.++.|..+. +.-+.-+.|+.+
T Consensus 259 ---------------------~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~-----m~~p~w~~G~~f 312 (464)
T KOG3764|consen 259 ---------------------QGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLET-----MFTPGWEVGLAF 312 (464)
T ss_pred ---------------------cCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHh-----ccCCCcceeeee
Confidence 223567788998887766655554444444455566776665 453344888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc--hhHHHHHHHHHHHHHHHHHHHHHhhh
Q 041273 239 AISGFSLLVFQLTLYPYVERMIG--PIIITRIAGVLSIPLLTSYTYIAMLS 287 (362)
Q Consensus 239 ~~~~~~~~~~~~~~~~~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (362)
....+.-.++. .+.+.+.||++ |......+++....+....++.+...
T Consensus 313 Lp~~~~y~ig~-~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~ 362 (464)
T KOG3764|consen 313 LPASLSYAIGT-NLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIA 362 (464)
T ss_pred cccccchhccC-chHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHH
Confidence 88888888887 89999999999 44444455555555555566665544
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=182.73 Aligned_cols=287 Identities=16% Similarity=0.159 Sum_probs=188.7
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTL 80 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~ 80 (362)
+|++++|+++||+|||++++.+.++..++.++.++++|++.+++.|+++|++.+..... ..+++|++++++|+.+..+
T Consensus 133 vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~- 211 (521)
T KOG0255|consen 133 VGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL- 211 (521)
T ss_pred HHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-
Confidence 68899999999999999999999999999999999999999999999999987776665 9999999999999999999
Q ss_pred HHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHhhcccccCCCCcCCccccccch
Q 041273 81 STAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLHKHNEDGVSLDVSCD 160 (362)
Q Consensus 81 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 160 (362)
......+..+++..++++.+ +||+.+ ++..++..+.++..+..||++++...+++..+ ..+
T Consensus 212 ~~~~~~~~~~~~~~~a~~~~---------~Wr~~~---------~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~-a~~ 272 (521)
T KOG0255|consen 212 GGFFFVGGLMLPAGAAYITR---------DWRWLF---------WIISIPSGLFLLLWFLPPESPRWLLSKGRIDE-AIK 272 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHh---------hHHHHH---------HHHHHHHHHHHHHHHccCcChHHHHHcCchHH-HHH
Confidence 88888888888888888863 677766 66666666655556667799998765554432 222
Q ss_pred hhhhhcCC---CCcc----ccc-----c---CcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhccccccc
Q 041273 161 ALESACGS---NAEF----KQD-----E---GSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYG 225 (362)
Q Consensus 161 ~~~~~~~~---~~~~----~~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (362)
.+++..+. ..+. +.. + ..+.+....++++.++++...+...+........ |........
T Consensus 273 ~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~------y~gl~~~~~ 346 (521)
T KOG0255|consen 273 ILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLV------YYGLSLNVS 346 (521)
T ss_pred HHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHH------HHhhhhhhh
Confidence 22222110 0110 000 0 1112234566777776555544433333111111 111111111
Q ss_pred ccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHH
Q 041273 226 GLSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGF-SLALLINCASVMKNV 304 (362)
Q Consensus 226 ~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 304 (362)
++|.+.. ......+....... ...+...++.|||.....+..+..++++...+....... .++....+..+.
T Consensus 347 ~lg~~~~---~~~~~~~~~~~p~~-~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 419 (521)
T KOG0255|consen 347 GLGGNIY---LNFTLSGLVELPAY-FRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFF--- 419 (521)
T ss_pred hcCchHH---HHHHHHHHHHhhHH-HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH---
Confidence 1333332 22333333444443 566788899999999999999999998888887765431 233333333322
Q ss_pred HHHHhhhHHHHHHhhhcc
Q 041273 305 LSVSIMTGLFLLQNRAVS 322 (362)
Q Consensus 305 ~~~~~~~~~~~~~~~~~p 322 (362)
.+.+. ...+...+|..|
T Consensus 420 ~~~~~-~~~~~~~~el~p 436 (521)
T KOG0255|consen 420 IGSAF-NLIFLYSAELIP 436 (521)
T ss_pred HHHHH-HHHHHHHHhhcc
Confidence 33333 444777888888
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.4e-21 Score=171.66 Aligned_cols=240 Identities=15% Similarity=0.142 Sum_probs=155.2
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHh---hh-----hhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhcccc
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFG---LS-----VSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQH 72 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~---~~-----~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~ 72 (362)
+++++.|+++||+|||+.++.+....+++..... +. +.+..+.+.|++.|++.+...+. ..+..|..+ +
T Consensus 53 i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~ 130 (396)
T TIGR00882 53 LFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--N 130 (396)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--h
Confidence 5689999999999999999887766655443321 11 22344566788899888877776 777766543 3
Q ss_pred chhhHHHHHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHhh-cccccCCCCcC
Q 041273 73 KTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCW-IPETLHKHNED 151 (362)
Q Consensus 73 r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~~~~~~ 151 (362)
+++.++......++|..+||.+++.+.+ .+||..| .+.+++.++..+..+. .||++++++ +
T Consensus 131 ~~~~~g~~~~~~~~g~~~g~~~~g~l~~--------~~~~~~f---------~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 192 (396)
T TIGR00882 131 SNFEYGKARMFGCVGWALCASIAGILFS--------IDPQIVF---------WLGSGFALILMLLLMFAKPKAPSSAT-V 192 (396)
T ss_pred cccccchhhhhcccHHHHHHHHHhhhhc--------cCchHHH---------HHHHHHHHHHHHHHHHhCCCCchhhh-h
Confidence 4567788888889999999999998864 4776665 5555555554433333 343322111 0
Q ss_pred CccccccchhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCc
Q 041273 152 GVSLDVSCDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYST 231 (362)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~ 231 (362)
++..+ +++++.+.++.++.+|||+++...+..+............++.|+.+... +.+.+.
T Consensus 193 ~~~~~-----------------~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~--~~~~~~ 253 (396)
T TIGR00882 193 ANALG-----------------ANASAFSLKLALELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFA--TPQQGT 253 (396)
T ss_pred hcccc-----------------cccCCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccccch
Confidence 00000 00001122356778899988766655554444444444456666655421 135566
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH
Q 041273 232 ENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYT 281 (362)
Q Consensus 232 ~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 281 (362)
...|...+...+...+.. ...+++.||+++|+.+.++..+..+......
T Consensus 254 ~~~g~~~~~~~i~~~~~~-~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~ 302 (396)
T TIGR00882 254 RVFGYVTTMGELLNALIM-FCAPLIINRIGAKNALLIAGTIMSVRIIGSS 302 (396)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence 677888888888888887 8889999999999998888877776655544
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.1e-20 Score=167.71 Aligned_cols=312 Identities=11% Similarity=0.013 Sum_probs=191.8
Q ss_pred cccchhhhhhcccCC-chHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHH--------hhhccc
Q 041273 2 LTSVLWGMVADRCGR-KPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYAC--------EILRDQ 71 (362)
Q Consensus 2 i~~~~~G~l~Dr~Gr-r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~--------~~~~~~ 71 (362)
++++++|+++||+|| |+++.++.+...++..+..+.++++.+++.|++.|++.+...+. .++.. |.....
T Consensus 53 i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~ 132 (418)
T TIGR00889 53 LMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDF 132 (418)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcC
Confidence 578999999999965 77888888888888888889999999999999999987766554 44432 223333
Q ss_pred cchhhHHHHHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHhhcccccCCCCcC
Q 041273 72 HKTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLHKHNED 151 (362)
Q Consensus 72 ~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 151 (362)
.|.|.+| .+|..+||.+++.+.. ..+|+ ++++.++..++..+..+.+||+++.++++
T Consensus 133 ~~~r~~G------~lG~~ig~~l~g~l~~-------~~~~~----------~f~~~~~~~~~~~~~~~~~~e~~~~~~~~ 189 (418)
T TIGR00889 133 PPIRVMG------TIGFIAAMWAVSLLDI-------ELSNI----------QLYITAGSSALLGVFALTLPDIPVAKSTA 189 (418)
T ss_pred CCeeeeh------hHHHHHHHHHHHHhcc-------cchhH----------HHHHHHHHHHHHHHHHhcCCCCCCCcccc
Confidence 4555555 4688889999887743 11222 22344444444444456778864322111
Q ss_pred CccccccchhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhccccccc--ccCC
Q 041273 152 GVSLDVSCDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYG--GLSY 229 (362)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~ 229 (362)
+.+.+ +....+.++.+|+|+++...+..++..........+.+.+..+.-... .-++
T Consensus 190 ~~~~~---------------------~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 248 (418)
T TIGR00889 190 KMSIK---------------------VMLGLDAFILFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSF 248 (418)
T ss_pred ccCHH---------------------HHhhhhHHHHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchh
Confidence 10000 001123456788888877777666655444444455565554320000 0123
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHh
Q 041273 230 STENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSI 309 (362)
Q Consensus 230 s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (362)
+....+...+...+..+++. +..+++.||+|+|+.+..+.++..+....+....... ..+....+...+.+......
T Consensus 249 ~~~~~g~~~~~~~i~~i~~~-~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~--~~~~~l~l~~~l~g~~~~~~ 325 (418)
T TIGR00889 249 VVKNASIWMSLSQFSEIFFI-LTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEY--FGYALLFLSMIVYGCAFDFF 325 (418)
T ss_pred hhhhHHHHHHHHHHHHHHHH-HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcch--hhHHHHHHHHHHHHHHHHHH
Confidence 45677899999999999987 8899999999999999999888777655554421111 11112222233333333344
Q ss_pred hhHHHHHHhhhccccccCCC---C----------------------C-----CChhHHHHHHHHHHHHHHHhhccccccc
Q 041273 310 MTGLFLLQNRAVSQKRQGAG---F----------------------L-----PGNQMIFFILNLVEALGVILTFKPFLIQ 359 (362)
Q Consensus 310 ~~~~~~~~~~~~p~~~~~~~---~----------------------~-----~g~~~~f~~~~~~~~i~~~~~~~~~l~~ 359 (362)
.+....+++|..|+++.+.. . . .|++..|.+.+++.+++.++.+. +.+|
T Consensus 326 ~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~-~~~~ 404 (418)
T TIGR00889 326 NISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMI-FFKY 404 (418)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHH-HhCC
Confidence 56667788888884333111 0 0 13567888888888887776665 4455
Q ss_pred cC
Q 041273 360 RA 361 (362)
Q Consensus 360 ~~ 361 (362)
++
T Consensus 405 ~~ 406 (418)
T TIGR00889 405 SH 406 (418)
T ss_pred cc
Confidence 43
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.6e-21 Score=174.42 Aligned_cols=279 Identities=16% Similarity=0.103 Sum_probs=178.8
Q ss_pred Ccccchhhhhhcc----cCCc-hHHHHHHHHHHHHHHHHhhhhh------HHHHHHHHHHHhhhcCcchhH-HHHHHhhh
Q 041273 1 ALTSVLWGMVADR----CGRK-PVIIIGCITVVIFNTLFGLSVS------FWMAIATRFLLGALNGLLGPI-KAYACEIL 68 (362)
Q Consensus 1 ~i~~~~~G~l~Dr----~Grr-~~l~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~ 68 (362)
++.+|+.|+++|| +||| +.++.+....+++.+++...++ ...+++.+++.+++.+...+. .++..|..
T Consensus 49 ~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~ 128 (437)
T TIGR00792 49 AITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAIT 128 (437)
T ss_pred HhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcccHhhCccccc
Confidence 3678999999997 6774 5677888888888887776653 456677788888887776544 88889987
Q ss_pred -ccccchhhHHHHHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHH-HHHHhhcccccC
Q 041273 69 -RDQHKTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAV-TIASCWIPETLH 146 (362)
Q Consensus 69 -~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~ 146 (362)
+++||++..++.+.+..+|..+++.+.+.+....++..+..+||..+ .+.+++.++. ++..+..||+++
T Consensus 129 ~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~---------~i~~~l~~~~~~~~~~~~~e~~~ 199 (437)
T TIGR00792 129 LDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFA---------LVLALIGVVSLIICFFGTKERYS 199 (437)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHH---------HHHHHHHHHHHHHHHcCCEecCC
Confidence 47899999999999999998888777666653211111234565544 5555555543 333455676542
Q ss_pred CCCcCCccccccchhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccc
Q 041273 147 KHNEDGVSLDVSCDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGG 226 (362)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (362)
+.++++++ +.+..+..+++++||+++...+..++............+.|....
T Consensus 200 ~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 252 (437)
T TIGR00792 200 EIPKNIEK----------------------KLSLKQIFKALFKNDQLLILCLAYLFYNLAFNIKNGVQVYYFTYV----- 252 (437)
T ss_pred CCCccccc----------------------CCCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcchhheeEeee-----
Confidence 21110000 011234566788999998877777666655555444444444332
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 041273 227 LSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLS 306 (362)
Q Consensus 227 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (362)
++ ++.+.+.+.....+..+++. ++.+++.||+|+|+.+..+..+..++.+.+.+.. . ..+. ..+...+.+++.
T Consensus 253 ~~-~~~~~~~~~~~~~i~~ii~~-~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~-~~~~~~~~g~~~ 325 (437)
T TIGR00792 253 LG-DPELFSYMGSIAIVAGLIGV-LLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAG--S--NLPL-ILVLIILAGFGQ 325 (437)
T ss_pred cC-ChHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcc--h--hHHH-HHHHHHHHHHHH
Confidence 34 45566777777778888886 8899999999999999888877777665554432 1 1111 122222223333
Q ss_pred HHhhhHHHHHHhhhcc
Q 041273 307 VSIMTGLFLLQNRAVS 322 (362)
Q Consensus 307 ~~~~~~~~~~~~~~~p 322 (362)
....+..+++.+|..|
T Consensus 326 ~~~~~~~~~~~~~~~~ 341 (437)
T TIGR00792 326 NFVTGLVWALVADTVD 341 (437)
T ss_pred HHHHHHHHHHHhhhhh
Confidence 4445667777777765
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.5e-21 Score=159.98 Aligned_cols=325 Identities=15% Similarity=0.142 Sum_probs=202.8
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTL 80 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~ 80 (362)
+++..+|.++|++|||+.+....+..++...+.+.++|+..+++.|.+.|+|.|. .|. .++-.|..|..+|..-+-..
T Consensus 128 lga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~ 206 (528)
T KOG0253|consen 128 VGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS 206 (528)
T ss_pred hhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH
Confidence 5778899999999999999999999999999999999999999999999999888 666 88999999998988776666
Q ss_pred HHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHhhcccccCCCCcCCccccccch
Q 041273 81 STAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLHKHNEDGVSLDVSCD 160 (362)
Q Consensus 81 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 160 (362)
..+.+|.++...+.-.... .+|||+.+ .....+..+.....+++||+++....+.++.+ +.+
T Consensus 207 -~~waig~v~ea~law~vm~-------~~gwr~~l---------~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~k-Ale 268 (528)
T KOG0253|consen 207 -FFWAIGQVFEALLAWGVMS-------NFGWRYLL---------FTSSTPLMFAARFLVWVYESPRFYLAKGDDYK-ALE 268 (528)
T ss_pred -HHHHHHHHHHHHHHHHHHH-------hhhHHHHH---------HHHHhHHHHHHHHHhhcccCcchhhhcCChHH-HHH
Confidence 9999999999999988887 88998877 55556666677788899999998665555544 333
Q ss_pred hhhhhcCCCC--------------ccccc----------cCcccchhhhcccccchhHHHHHH-HHHHHHHHhHHHH---
Q 041273 161 ALESACGSNA--------------EFKQD----------EGSEEATAKKSLMKNWPFISSTIV-YCVFSLHDIAYTE--- 212 (362)
Q Consensus 161 ~~~~~~~~~~--------------~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--- 212 (362)
.+++..+.+. +.+++ ..++...+..+++. |+++...+. ...++...+.+..
T Consensus 269 tL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLls-p~lrkttlllw~iwfgnafsyyg~VL 347 (528)
T KOG0253|consen 269 TLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLS-PKLRKTTLLLWRIWFGNAFSYYGSVL 347 (528)
T ss_pred HHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcC-hHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3222211100 00000 01112223333432 333333222 2222222222221
Q ss_pred HHHhHhcccccccc--------------cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH
Q 041273 213 IFSLWAISPWKYGG--------------LSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLT 278 (362)
Q Consensus 213 ~~~~~~~~~~~~~~--------------~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~ 278 (362)
+..-+.+.....+. ...+..+--.-.....+....+. ++.+++.||+|||+.+...+++.++.++
T Consensus 348 lttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGl-LIt~~iverlGRKkTMal~l~~f~iflf 426 (528)
T KOG0253|consen 348 LTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGL-LITGVIVERLGRKKTMALSLILFGIFLF 426 (528)
T ss_pred HHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCch-hHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 11112221110000 01111111112333455555664 7889999999999999999998887766
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcc-------------ccccCCCCCC--------ChhHH
Q 041273 279 SYTYIAMLSGFSLALLINCASVMKNVLSVSIMTGLFLLQNRAVS-------------QKRQGAGFLP--------GNQMI 337 (362)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------------~~~~~~~~~~--------g~~~~ 337 (362)
.+....... ... +..+..-++..+.+.+.+.+..|++| .+|.++.+.+ ....+
T Consensus 427 ll~~c~~rn--~~t----vllf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA~~~e~s~sl~ 500 (528)
T KOG0253|consen 427 LLTTCKTRN--AYT----VLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIAMRAELSTSLP 500 (528)
T ss_pred HHHHhcCcc--hhH----HHHHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHHHHhccceeeh
Confidence 554332211 111 11122222445556778899999999 3444444444 23456
Q ss_pred HHHHHHHHHHHHHhhc
Q 041273 338 FFILNLVEALGVILTF 353 (362)
Q Consensus 338 f~~~~~~~~i~~~~~~ 353 (362)
-.+.+.+++++.+...
T Consensus 501 i~vy~~~~ilagIavc 516 (528)
T KOG0253|consen 501 IFVYGALFILAGIAVC 516 (528)
T ss_pred HHHHHHHHHHHHHHhe
Confidence 6677777777766654
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.7e-20 Score=168.42 Aligned_cols=299 Identities=13% Similarity=0.044 Sum_probs=176.2
Q ss_pred ccchhhhhhcc-cCCchHHHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHHhhhcCcchhH-HHHHHhhhccc--cchhhH
Q 041273 3 TSVLWGMVADR-CGRKPVIIIGCITVVIFNTLFGLSVSFWM-AIATRFLLGALNGLLGPI-KAYACEILRDQ--HKTLGL 77 (362)
Q Consensus 3 ~~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~-l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~--~r~~~~ 77 (362)
..+++|+++|| +||||+++++.++++++.+.++++++... ++++|+++|++.|...|. .+++.|.+|++ +|.+++
T Consensus 66 ~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~ 145 (489)
T PRK10207 66 LISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAF 145 (489)
T ss_pred HHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcch
Confidence 45789999999 99999999999999999999999876554 457899999999998777 99999999876 457899
Q ss_pred HHHHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHhhcccccCCCC--cCCccc
Q 041273 78 STLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLHKHN--EDGVSL 155 (362)
Q Consensus 78 ~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~--~~~~~~ 155 (362)
+++..+.++|..+||.+++++.+ +.|||+.| ++..+..+..++.....++..++.+ .++++.
T Consensus 146 ~~~~~~~nig~~~g~~l~g~l~~-------~~gw~~~F---------~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (489)
T PRK10207 146 TLFYMSINIGSLISLSLAPVIAD-------KFGYSVTY---------NLCGAGLIIALLVYFACRGMVKDIGSEPDHKPM 209 (489)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-------hhChHHHH---------HHHHHHHHHHHHHHHHcchhhcccCCCCCccch
Confidence 99999999999999999999998 78898877 4433222222333333332211110 001001
Q ss_pred c--ccch----------hhhhhcCCCCccccc-------------cCcccchhhhcccccchhHHHHHH--HHHHHHHHh
Q 041273 156 D--VSCD----------ALESACGSNAEFKQD-------------EGSEEATAKKSLMKNWPFISSTIV--YCVFSLHDI 208 (362)
Q Consensus 156 ~--~~~~----------~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 208 (362)
+ .... ......+.. ..... ..++ ....+.+|+|.+....+. ..++.....
T Consensus 210 d~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~f~~~~--~~~~~~~r~r~~~~~~l~~~~~~f~~~~~ 286 (489)
T PRK10207 210 SFSKLLLVLLGSVVMIFVCAWLMHNV-EVANLVLIVLSIVVTIIFFREA--FKLDKTGRNKMFVAFVLMLEAVVFYILYA 286 (489)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 0000 000000000 00000 0000 001134555555443322 222333333
Q ss_pred HHHHHHHhHhcccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhH-------HHHHHHHHHHHHHHHHH
Q 041273 209 AYTEIFSLWAISPWKYGGLSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPII-------ITRIAGVLSIPLLTSYT 281 (362)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~-------~~~~~~~~~~~~~~~~~ 281 (362)
.....++.+.++....+..|+... .+.+.+...+..++.+ ++.+++.||+++|+ .+.+|.++..++++.+.
T Consensus 287 q~~~~l~l~~~~~~~~~~~G~~i~-~~~~~~~n~~~iii~~-pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~ 364 (489)
T PRK10207 287 QMPTSLNFFAINNVHHEILGFSIN-PVSFQALNPFWVVVAS-PILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAA 364 (489)
T ss_pred HcccHHHHHHHHhccccccceEEC-HHHHHhHhHHHHHHHH-HHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 333456666654322222233322 2344455556666666 77789999998886 36677777666654432
Q ss_pred H----HHhhh-hhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhccc
Q 041273 282 Y----IAMLS-GFSLALLINCASVMKNVLSVSIMTGLFLLQNRAVSQ 323 (362)
Q Consensus 282 ~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 323 (362)
. ..... ....|. ......+.+.+.....|...++..+..|+
T Consensus 365 ~~~~~~~~~~~~~s~~~-~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~ 410 (489)
T PRK10207 365 AAGMWFADAQGLTSPWF-IVLVYLFQSLGELFISALGLAMIAALVPQ 410 (489)
T ss_pred HHHHhhcCCCCccCHHH-HHHHHHHHHHHHHHHhHHHHHHHHHhChH
Confidence 1 11111 111222 33455555667777778888888888883
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.8e-20 Score=167.81 Aligned_cols=307 Identities=10% Similarity=0.049 Sum_probs=179.2
Q ss_pred cccchhhhhhcc-cCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhcccc---chhh
Q 041273 2 LTSVLWGMVADR-CGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQH---KTLG 76 (362)
Q Consensus 2 i~~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~---r~~~ 76 (362)
++++++|+++|| +|||+++.++.++.+++.++.+++++++.++++|.+.|++.|...|. .++++|++|+++ |+++
T Consensus 63 ~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~ 142 (475)
T TIGR00924 63 LLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGG 142 (475)
T ss_pred HHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccce
Confidence 467899999999 89999999999999999999999999999999999999999988777 899999998754 8889
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHhhcccccC----CCCcCC
Q 041273 77 LSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLH----KHNEDG 152 (362)
Q Consensus 77 ~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~----~~~~~~ 152 (362)
+++.....++|..+||.+++++.+ ..|||..| .+.++..++..+.....++..+ ++++.+
T Consensus 143 ~~~~~~~~niG~~ig~~l~g~l~~-------~~g~~~~f---------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 206 (475)
T TIGR00924 143 FTLFYMSINIGSFISPLLAGVIAE-------NYGYHVGF---------NLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLS 206 (475)
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHH-------hcChHHHH---------HHHHHHHHHHHHHHHHcccccccCCCCCCCcc
Confidence 999999999999999999999987 67887776 4444333333333333332211 111000
Q ss_pred ccccccchhh-----------hh--hcCCCCcccc--------------ccCcccchhhhcccccchhHHHHHHHHHHHH
Q 041273 153 VSLDVSCDAL-----------ES--ACGSNAEFKQ--------------DEGSEEATAKKSLMKNWPFISSTIVYCVFSL 205 (362)
Q Consensus 153 ~~~~~~~~~~-----------~~--~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (362)
+++++..... .. ........+. ....+...+..+..|...+....+...++..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ 286 (475)
T TIGR00924 207 GQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLAFKPRLDAVARNKMYAYIVLFLEAVVFWV 286 (475)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHhHHHHHHHHHHHHHHHHH
Confidence 0000000000 00 0000000000 0000000000011111223333343334444
Q ss_pred HHhHHHHHHHhHhcccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhch-----hHHH--HHHHHHHHHHHH
Q 041273 206 HDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGP-----IIIT--RIAGVLSIPLLT 278 (362)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~-----~~~~--~~~~~~~~~~~~ 278 (362)
......+.++++..+....+-.++ ....+.+.+..++..++.+ ++..++..|.++ +... .+|.++..++..
T Consensus 287 ~~~Q~~s~l~l~~~~~~~~~~~~~-~ip~~~~~~~n~~~iil~~-p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~ 364 (475)
T TIGR00924 287 LYAQMPTSLNFFADNNMHHEMLGM-SVPVIWFQSLNPFWVVVGS-PVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFL 364 (475)
T ss_pred HHHHhhhHHHHHHHHhccccccce-EECHHHHHhhhHHHHHHHH-HHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 444444445555544311110111 1226778888888888887 443333333332 3333 567777766665
Q ss_pred HHHHHHhhh---hhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcccccc
Q 041273 279 SYTYIAMLS---GFSLALLINCASVMKNVLSVSIMTGLFLLQNRAVSQKRQ 326 (362)
Q Consensus 279 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 326 (362)
.+.+..... .............+.+.+.....|..+++..+..|++..
T Consensus 365 ~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~ 415 (475)
T TIGR00924 365 TFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLM 415 (475)
T ss_pred HHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHH
Confidence 554321111 011222344555666678888899999999999995443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.9e-19 Score=159.09 Aligned_cols=225 Identities=13% Similarity=0.057 Sum_probs=148.3
Q ss_pred ccchh-hhhhcccCCchHHHHHHHH-HHHHHHHHh---hhhh-HHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchh
Q 041273 3 TSVLW-GMVADRCGRKPVIIIGCIT-VVIFNTLFG---LSVS-FWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTL 75 (362)
Q Consensus 3 ~~~~~-G~l~Dr~Grr~~l~~~~~~-~~~~~~~~~---~~~~-~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~ 75 (362)
.+|++ ++.+||+||||..++...+ .++.....+ ...+ ..+++..-++.++..+...+. .++..|..++++++.
T Consensus 54 ~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~ 133 (390)
T TIGR02718 54 WAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAK 133 (390)
T ss_pred HHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhH
Confidence 34555 4468889999887555433 222222222 2222 333344444555556666666 778888888888888
Q ss_pred hHHHHHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHhhcccccCCCCcCCccc
Q 041273 76 GLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLHKHNEDGVSL 155 (362)
Q Consensus 76 ~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 155 (362)
..+....+..+|..+|+...+++.+ ..|||..| ++.++..++..+..++.+|++++++++ +.
T Consensus 134 ~~~~~~~g~~lG~~~g~~~~~~l~~-------~~gw~~~f---------~~~a~l~~~~~~~~~~~~~~~~~~~~~--~~ 195 (390)
T TIGR02718 134 GNAVQIAGVMIGFFGGGAGTLVLFG-------KFGQRPAF---------LLVACVPLASLVCVLWLKDRAVASPEA--PL 195 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HhCHHHHH---------HHHHHHHHHHHHHHHHcCCCCcCcccc--ch
Confidence 8888888889999999998889888 77888776 666665555444444554432211110 00
Q ss_pred cccchhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhH
Q 041273 156 DVSCDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAG 235 (362)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g 235 (362)
+ ...+.++.+|+|.++......++..........+.+.|+.+ .|+++++.|
T Consensus 196 ~-----------------------~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~------~G~s~~~ig 246 (390)
T TIGR02718 196 A-----------------------RRASLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVD------AGWPLEWIG 246 (390)
T ss_pred h-----------------------hHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHh------cCCCHHHHH
Confidence 0 11245678888888877777677666666666677766654 599999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Q 041273 236 QVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSI 274 (362)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~ 274 (362)
.+....+....+.+.++.+++.||+|+|+.+..+.....
T Consensus 247 ~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~ 285 (390)
T TIGR02718 247 RLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAG 285 (390)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 998887765544433889999999999999887766553
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-22 Score=173.02 Aligned_cols=349 Identities=16% Similarity=0.117 Sum_probs=204.9
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhh-------hHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccc
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSV-------SFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHK 73 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~-------~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r 73 (362)
+||++.|++.||+|||+++...++++.+++++++++. -.+++...|++.|+|.|.-+|. .+..+|...+++|
T Consensus 99 ~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~R 178 (538)
T KOG0252|consen 99 FGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTR 178 (538)
T ss_pred HHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccc
Confidence 5899999999999999999999999999999888753 2578889999999999999998 8889999999999
Q ss_pred hhhHHHHHHhhhhhhhhhhhhhhhhcCccccCCccccccccc--ccccchhhHHHHHHHHHHHHHHHhhcccccCCCCcC
Q 041273 74 TLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMF--GKFPYFLPCLCMSLFAFAVTIASCWIPETLHKHNED 151 (362)
Q Consensus 74 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 151 (362)
|...+......+.|...|.+++..+....+. .++-+... -+..|++.+.+.+++++..+...+.+||+++.+...
T Consensus 179 Ga~iaavFa~Qg~GilaG~ivt~Iv~~~fe~---~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~ 255 (538)
T KOG0252|consen 179 GAFIAAVFAMQGFGILAGGIVALIVSAIFEK---IFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALV 255 (538)
T ss_pred cceeEEEEEecchhHhhccHHHHHHHHHHhc---cCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHh
Confidence 9999999888888888888777666432221 11111000 023456666778888877788888899998765222
Q ss_pred CccccccchhhhhhcCCCCccc------cccCcccchhhhcccccc---hhHHHHHHHHHHHHHHhHHHHHHHhHhcccc
Q 041273 152 GVSLDVSCDALESACGSNAEFK------QDEGSEEATAKKSLMKNW---PFISSTIVYCVFSLHDIAYTEIFSLWAISPW 222 (362)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (362)
+++.+...++.++....+.+.+ ....++....+.+.+..+ +++......++.-...+.........+
T Consensus 256 ~~~~~~a~~d~~k~~~~~~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~---- 331 (538)
T KOG0252|consen 256 SKKLKQAAGDMKKVLSVDIEAESTAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIF---- 331 (538)
T ss_pred hcCHhhhhhccccccccccchhhccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHH----
Confidence 2221111111111111110000 001111111222233333 333333334444334333332222222
Q ss_pred cccccCCCchhhHH--------HHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 041273 223 KYGGLSYSTENAGQ--------VLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALL 294 (362)
Q Consensus 223 ~~~~~g~s~~~~g~--------~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (362)
+.+|+.+.+... ...+....+.+-.+++...+.|++||++....++.++.+..+.+....+... .....
T Consensus 332 --~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~-~~~Gf 408 (538)
T KOG0252|consen 332 --SAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLE-NTIGF 408 (538)
T ss_pred --HhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCccccc-ccCce
Confidence 224555544333 1222222222222245567799999999999999998887766654443111 11111
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhhcccc-------------ccC---------------CCCCCChhHHHHHHHHHHH
Q 041273 295 INCASVMKNVLSVSIMTGLFLLQNRAVSQK-------------RQG---------------AGFLPGNQMIFFILNLVEA 346 (362)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-------------~~~---------------~~~~~g~~~~f~~~~~~~~ 346 (362)
..+......+...+-......+.+|.+|.. +.+ -+...|...+|+++++++.
T Consensus 409 ~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~ 488 (538)
T KOG0252|consen 409 VVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCML 488 (538)
T ss_pred eehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHH
Confidence 111111212233333334445567788811 111 1122367899999999999
Q ss_pred HHHHhhccccccccCC
Q 041273 347 LGVILTFKPFLIQRAT 362 (362)
Q Consensus 347 i~~~~~~~~~l~~~~~ 362 (362)
++.++++. +||+|+
T Consensus 489 ~gi~~T~l--~pEtk~ 502 (538)
T KOG0252|consen 489 LGILFTLL--IPETKG 502 (538)
T ss_pred HhHheeEE--eecccc
Confidence 99998876 677763
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.2e-18 Score=144.87 Aligned_cols=285 Identities=16% Similarity=0.198 Sum_probs=205.8
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHh---hhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFG---LSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGL 77 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~---~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~ 77 (362)
+++++.|++.+|+|+|+.++.++.++++++.++. ...++..++++-++.|.|.+...++ ..+++...++++-.+.+
T Consensus 63 ~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rl 142 (422)
T COG0738 63 IMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRL 142 (422)
T ss_pred HHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHH
Confidence 5688999999999999999999999999999985 5678999999999999999998777 99999999999999999
Q ss_pred HHHHHhhhhhhhhhhhhhhhhcCccc----cCCcccccccccccccchhhHHHHHHHHHHHHHHHh--hcccccCCCCcC
Q 041273 78 STLSTAWGTGLIIGPAVGGFLAQPAE----KYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASC--WIPETLHKHNED 151 (362)
Q Consensus 78 ~~~~~~~~~g~~~g~~~~~~l~~~~~----~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~e~~~~~~~~ 151 (362)
++.+...++|.++||++++.+..... +......|+... -..+..+....+...++..+... ..||.++..+++
T Consensus 143 nl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~-~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~~ 221 (422)
T COG0738 143 NLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGAD-ASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPSL 221 (422)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcccccc
Confidence 99999999999999999999886210 000011222211 01122222333333332222222 233322221111
Q ss_pred CccccccchhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCc
Q 041273 152 GVSLDVSCDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYST 231 (362)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~ 231 (362)
.+. ......+++|+|+++...+..+++...+....++++.|+.+. .|.+.
T Consensus 222 ~~~-------------------------~~~~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~-----~g~~~ 271 (422)
T COG0738 222 GAS-------------------------GSAGLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEEL-----LGLNE 271 (422)
T ss_pred ccc-------------------------ccchHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc-----CCccH
Confidence 111 111567889999999999999999999999999999999886 68899
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 041273 232 ENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMT 311 (362)
Q Consensus 232 ~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (362)
.+.+...+..-.+.++++ +++.++.+|+...|.+.....+..+.++...+.+... ........+.+...++|
T Consensus 272 ~~aa~~~s~~~~~~~vGR-Fig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v-------~~~~l~~ig~F~simfP 343 (422)
T COG0738 272 QQAAYYLSFFWVGFMVGR-FIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVV-------ALYALFLIGLFNSIMFP 343 (422)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChH-------HHHHHHHHHHHhHHHHH
Confidence 999999999999999998 8888888899999998877766665555555554311 11222233335566779
Q ss_pred HHHHHHhhhccccc
Q 041273 312 GLFLLQNRAVSQKR 325 (362)
Q Consensus 312 ~~~~~~~~~~p~~~ 325 (362)
...++..+..|++.
T Consensus 344 TIfslal~~l~~~t 357 (422)
T COG0738 344 TIFSLALKNLGEHT 357 (422)
T ss_pred HHHHHHHhccCccc
Confidence 89999888888433
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.1e-18 Score=150.59 Aligned_cols=131 Identities=13% Similarity=0.117 Sum_probs=112.2
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhHHHHHHhhhccccchhhHHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPIKAYACEILRDQHKTLGLSTLS 81 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~ 81 (362)
+.+++.|+++||+|.|+++..+.+.+++..++.++++++..+.+.|++.|++.|.......++.+++|+++|+++.++..
T Consensus 77 l~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~A~~syI~~WfP~kER~ratsi~~ 156 (511)
T TIGR00806 77 AVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARIAYSSYIFSLVPPSRYQRAAAYSR 156 (511)
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999988833999999999999999999999
Q ss_pred HhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHhhcccccC
Q 041273 82 TAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLH 146 (362)
Q Consensus 82 ~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 146 (362)
.+..+|.++++++++++ . .+|||+.. ...++......+.++..+++|..++
T Consensus 157 sg~~vG~~Ia~~L~qll-~-------s~gWr~y~------~Ln~Isl~s~~~a~~~a~~LP~~~~ 207 (511)
T TIGR00806 157 AAVLLGVFLSSVLGQLL-V-------TLGWISYS------TLNIISLVFMTFSVFLALFLKRPKR 207 (511)
T ss_pred HHHHHHHHHHHHHHHHH-H-------hcCchhHH------HHHHHHHHHHHHHHHHHHhCCCCch
Confidence 99999999999999994 4 57888644 3334444444456666678885444
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.7e-18 Score=153.05 Aligned_cols=338 Identities=16% Similarity=0.142 Sum_probs=195.3
Q ss_pred cccchhhhhhc----ccCCchHHHHH-HHHHHHHHHHHhhhhhHHH-----------------HHHHHHHHhhhcCcc-h
Q 041273 2 LTSVLWGMVAD----RCGRKPVIIIG-CITVVIFNTLFGLSVSFWM-----------------AIATRFLLGALNGLL-G 58 (362)
Q Consensus 2 i~~~~~G~l~D----r~Grr~~l~~~-~~~~~~~~~~~~~~~~~~~-----------------l~~~r~l~G~~~~~~-~ 58 (362)
+.+|+.|+++| |+||||.++.+ .....++..+++++++.+. .+++-.+..++.... .
T Consensus 54 i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~ 133 (477)
T TIGR01301 54 LVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQG 133 (477)
T ss_pred HHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999 59999988774 6666677777777766432 222222333455544 4
Q ss_pred hHHHHHHhhhccccc--hhhHHHHHHhhhhhhhhhhhhhhhhcCccccCCccccccc--ccc--cccchhhHHHHHHHHH
Q 041273 59 PIKAYACEILRDQHK--TLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKES--MFG--KFPYFLPCLCMSLFAF 132 (362)
Q Consensus 59 ~~~~~i~~~~~~~~r--~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~--~~~--~~~~~~~~~~~~~~~~ 132 (362)
|..++++|.+|+++| +.+.++.+...++|.++|+.++++..... .+++.. ..+ ...++..+++.++..+
T Consensus 134 p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~F~i~a~~l~ 208 (477)
T TIGR01301 134 PCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYK-----IFPFTKTEACGVSCANLKSCFLIDIILLA 208 (477)
T ss_pred HHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-----hcccccccccccccchHHHHHHHHHHHHH
Confidence 459999999998865 57999999999999999999998752100 111100 000 0123333455555554
Q ss_pred H-HHHHHhhcccccCCCCcCCccccccchhhhhhcCCCCccccccCcccchhhhccc---c--cchhHHHHHHHHHHHHH
Q 041273 133 A-VTIASCWIPETLHKHNEDGVSLDVSCDALESACGSNAEFKQDEGSEEATAKKSLM---K--NWPFISSTIVYCVFSLH 206 (362)
Q Consensus 133 ~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~ 206 (362)
+ .++..+..||.+...+++.++++ .++.++.+.....++++ | .|.++.++++.++....
T Consensus 209 i~~l~t~~~v~E~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a 273 (477)
T TIGR01301 209 ILTYIALSAVKENPLIGSDDFINSE---------------AAPPSKHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIA 273 (477)
T ss_pred HHHHHHeeeeeccCCCccccchhhh---------------cccccccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 4 44555678887643221110000 00000000111122222 2 25677778887777666
Q ss_pred HhHHHHHHHhHhcccccccccCCCc--hh---hH-HHHHHHHHHHHHHHHHHHHHHHHhhch-hHHHHHHHHHHHHHHHH
Q 041273 207 DIAYTEIFSLWAISPWKYGGLSYST--EN---AG-QVLAISGFSLLVFQLTLYPYVERMIGP-IIITRIAGVLSIPLLTS 279 (362)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~g~s~--~~---~g-~~~~~~~~~~~~~~~~~~~~l~~~~g~-~~~~~~~~~~~~~~~~~ 279 (362)
.+.+..+.+.|..+....++-+-+. ++ .| +-...+++...+.+ ++.+++.||+|+ |+....+.++.++++..
T Consensus 274 ~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s-~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~ 352 (477)
T TIGR01301 274 WFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITS-IGMEKLCRGWGAGKRLWGIVNIILAICLAA 352 (477)
T ss_pred HHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccchhHHHHHHHHHHHHHHH
Confidence 6666555555544321111000010 01 12 33444555555666 678999999985 67778888888888877
Q ss_pred HHHHHhhhh---------------hhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhccc-cccCCCCCC-----------
Q 041273 280 YTYIAMLSG---------------FSLALLINCASVMKNVLSVSIMTGLFLLQNRAVSQ-KRQGAGFLP----------- 332 (362)
Q Consensus 280 ~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~----------- 332 (362)
..+....++ ........+.+...++.....+...++++++..|+ ++..+.++.
T Consensus 353 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQi 432 (477)
T TIGR01301 353 TVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQI 432 (477)
T ss_pred HHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHH
Confidence 776654211 01112333444444556666678889999998884 333333322
Q ss_pred ---------------ChhHHHHHHHHHHHHHHHhhccccccccC
Q 041273 333 ---------------GNQMIFFILNLVEALGVILTFKPFLIQRA 361 (362)
Q Consensus 333 ---------------g~~~~f~~~~~~~~i~~~~~~~~~l~~~~ 361 (362)
+....+.+.++.++++.+.+++ .+|+++
T Consensus 433 i~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~-~~~~~~ 475 (477)
T TIGR01301 433 IVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALI-LLPRPR 475 (477)
T ss_pred HHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHH-hCCCCC
Confidence 2466777888888888888775 677765
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.2e-18 Score=154.48 Aligned_cols=252 Identities=15% Similarity=0.158 Sum_probs=162.3
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhHHHHHHhhhccccchhhHHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPIKAYACEILRDQHKTLGLSTLS 81 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~ 81 (362)
+.+++.|+++|.||||.+++.+.++..+|.++++.++|...++++-.+.|+|.|........++|..|.|.|+...+...
T Consensus 93 v~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~~~~~isEl~p~k~R~~~~~~~~ 172 (599)
T PF06609_consen 93 VSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQELAALAISELVPNKWRGLGLAIAS 172 (599)
T ss_pred HHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccchhhhHhHHHH
Confidence 46789999999999999999999999999999999999999999999999998776656777999999999988887777
Q ss_pred HhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHH--HHHHhhcccccCCCCcCCccccccc
Q 041273 82 TAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAV--TIASCWIPETLHKHNEDGVSLDVSC 159 (362)
Q Consensus 82 ~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~e~~~~~~~~~~~~~~~~ 159 (362)
...-.....+|.++..+.. ..+|||.| ++.++...+. ....++.|++.+..+.++...++..
T Consensus 173 ~~~i~~~~~~~~ia~~~~~-------~~~WRw~~---------~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l 236 (599)
T PF06609_consen 173 IPFIITTWISPLIAQLFAA-------HSGWRWIF---------YIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQL 236 (599)
T ss_pred HHHHhhhcccHHHHHHhcc-------CCCcchHH---------HHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHH
Confidence 6666666677777776665 67898877 3333333332 2222334433222111111111111
Q ss_pred hhhh-------------------hhcCCCCcccccc----------------------Ccccchhhhccccc-chhHHHH
Q 041273 160 DALE-------------------SACGSNAEFKQDE----------------------GSEEATAKKSLMKN-WPFISST 197 (362)
Q Consensus 160 ~~~~-------------------~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~-~~~~~~~ 197 (362)
.+++ .....+.++++.+ +.+.+.-..+++|+ |.+...+
T Consensus 237 ~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~~~~~l 316 (599)
T PF06609_consen 237 KELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDRRGFAALL 316 (599)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHhccchHHHHHH
Confidence 1111 1111122333222 11234455678887 4555555
Q ss_pred HHHHHHHHHHhHHHHHHHhHhcccccccccCCCc---hhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHH-HHHHHHH
Q 041273 198 IVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYST---ENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIIT-RIAGVLS 273 (362)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~---~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~-~~~~~~~ 273 (362)
++.++.....++...++|...... ++-++ .+.+......+++...+. .+.+.+.+++++.|.. ..+...+
T Consensus 317 vi~fi~G~~~~s~~~l~p~~~~~v-----f~~d~~~~~~~~~~s~~~~fg~~~g~-~i~g~l~~~ir~~Kw~li~~~~~~ 390 (599)
T PF06609_consen 317 VISFISGMNFFSVNILWPQQVVNV-----FGSDPISITEIGWISSPVGFGSCAGA-VILGLLFSKIRHIKWQLIFGSVLM 390 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh-----ccCCCcccceeehhhhhHHHHHHHHH-HHHHHHHHHccchhHHHHHHHHHH
Confidence 666666666666666777665544 33333 356777777788877776 6777788777766654 3444444
Q ss_pred HH
Q 041273 274 IP 275 (362)
Q Consensus 274 ~~ 275 (362)
.+
T Consensus 391 ta 392 (599)
T PF06609_consen 391 TA 392 (599)
T ss_pred HH
Confidence 43
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.9e-18 Score=153.04 Aligned_cols=322 Identities=17% Similarity=0.189 Sum_probs=206.9
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHH-HHHHhhhcCcc-hhHHHHHHhhhccccchhhHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIAT-RFLLGALNGLL-GPIKAYACEILRDQHKTLGLST 79 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~-r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~ 79 (362)
+..|+.+.+.||+|.|++.+.|.++..++.++..+++++|++++. -++.|+|.|+. .|+...+..++ +|+|+.+.|+
T Consensus 96 ~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gi 174 (509)
T KOG2504|consen 96 LAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGI 174 (509)
T ss_pred HhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhh
Confidence 357899999999999999999999999999999999999999887 67889999886 55577777555 6789999999
Q ss_pred HHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHH-hhcccccCCCCcCCccc---
Q 041273 80 LSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIAS-CWIPETLHKHNEDGVSL--- 155 (362)
Q Consensus 80 ~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~--- 155 (362)
...+.++|..+-|.+..++.+ ..|||... ++.+.+.+-.+... ..-|..++..+.+.++.
T Consensus 175 a~~GsG~G~~~~~~l~~~l~~-------~~G~r~~~---------l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~ 238 (509)
T KOG2504|consen 175 AVSGTGVGTVVFPPLLKYLLS-------KYGWRGAL---------LIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNS 238 (509)
T ss_pred hhccCCcceeeHHHHHHHHHH-------HhCcHHHH---------HHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccc
Confidence 999999999999999999998 88888766 44444444333333 33332222211100000
Q ss_pred ---------cccchhhhhhcC-C------CCcccccc---C--cccch---hhhcccccchhHHHHHHHHHHHHHHhHHH
Q 041273 156 ---------DVSCDALESACG-S------NAEFKQDE---G--SEEAT---AKKSLMKNWPFISSTIVYCVFSLHDIAYT 211 (362)
Q Consensus 156 ---------~~~~~~~~~~~~-~------~~~~~~~~---~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (362)
+...+..++... . .++.++.+ + ..+.. ...+++|++.++...+...+.........
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~ 318 (509)
T KOG2504|consen 239 AASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPF 318 (509)
T ss_pred cccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHH
Confidence 000000000000 0 00000000 0 11111 13678899999988888887777777777
Q ss_pred HHHHhHhcccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhc--hhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 041273 212 EIFSLWAISPWKYGGLSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIG--PIIITRIAGVLSIPLLTSYTYIAMLSGF 289 (362)
Q Consensus 212 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (362)
.++|-|..+ .+++..+.+.+++..++..+++. ++.|++.|+.. ++....++.+..++.....++.....
T Consensus 319 ~~l~~~~~~------~g~~~~~aa~l~Siigi~~i~gR-i~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~-- 389 (509)
T KOG2504|consen 319 VYLPSYAKS------LGLSSNDAAFLLSIIGVSDIIGR-IILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYV-- 389 (509)
T ss_pred HHHHHHHhh------cCCChhhhHHHHHHHHHhhhhhh-hhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHH--
Confidence 677777664 69999999999999999999998 99999999877 33444455555555554444444321
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhccccccCCCC-----------------C------CC-hhHHHHHHHHHH
Q 041273 290 SLALLINCASVMKNVLSVSIMTGLFLLQNRAVSQKRQGAGF-----------------L------PG-NQMIFFILNLVE 345 (362)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-----------------~------~g-~~~~f~~~~~~~ 345 (362)
.++....+.+.+.............+..+..|-...+ . .| |...|...+++.
T Consensus 390 ----~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~ 465 (509)
T KOG2504|consen 390 ----GLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCF 465 (509)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHH
Confidence 2222222222233333333445666666633332111 0 02 677888888888
Q ss_pred HHHHHhhc
Q 041273 346 ALGVILTF 353 (362)
Q Consensus 346 ~i~~~~~~ 353 (362)
+++..+.+
T Consensus 466 ~~s~~~~~ 473 (509)
T KOG2504|consen 466 LLSAVLLL 473 (509)
T ss_pred HHHHHHHH
Confidence 88775544
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-18 Score=158.77 Aligned_cols=279 Identities=15% Similarity=0.106 Sum_probs=189.7
Q ss_pred Ccccchhhhhhc----ccCCc-hHHHHHHHHHHHHHHHHhhh-h-------hHHHHHHHHHHHhhhcCcchhH-HHHHHh
Q 041273 1 ALTSVLWGMVAD----RCGRK-PVIIIGCITVVIFNTLFGLS-V-------SFWMAIATRFLLGALNGLLGPI-KAYACE 66 (362)
Q Consensus 1 ~i~~~~~G~l~D----r~Grr-~~l~~~~~~~~~~~~~~~~~-~-------~~~~l~~~r~l~G~~~~~~~~~-~~~i~~ 66 (362)
++..|+.|.++| |+||| +.++++....+++.+++... + ...++.+.-++..++....... .++..|
T Consensus 51 ai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~ 130 (428)
T PF13347_consen 51 AITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPE 130 (428)
T ss_pred hhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCcc
Confidence 467899999999 89976 55667888888888887766 4 2334566666667776666444 999999
Q ss_pred hhc-cccchhhHHHHHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHH-HHHHHhhcccc
Q 041273 67 ILR-DQHKTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFA-VTIASCWIPET 144 (362)
Q Consensus 67 ~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~ 144 (362)
..+ +|||.+..+..+.+..+|..+...+.+.+.+..++.....+|+.. ..+.+++.++ .++..+..||+
T Consensus 131 lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~---------~~v~~iv~~v~~~i~~~~~ke~ 201 (428)
T PF13347_consen 131 LTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWM---------ALVLAIVGLVFFLITFFFVKER 201 (428)
T ss_pred ccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHH---------HHHHHHHHHHHhhhhhheeeec
Confidence 998 679999999999999999987777777766522211111134333 3555555544 44445567772
Q ss_pred cCCCCcCCccccccchhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccc
Q 041273 145 LHKHNEDGVSLDVSCDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKY 224 (362)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (362)
+++.++++++. +..+..++++|||+++...+..++............+.|....
T Consensus 202 ~~~~~~~~~~~-----------------------~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~v--- 255 (428)
T PF13347_consen 202 SVEVTEQEKKI-----------------------SLRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYV--- 255 (428)
T ss_pred ccccccccccc-----------------------ccccchhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHH---
Confidence 22221111111 1345678889999999988888887777776666666666554
Q ss_pred cccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 041273 225 GGLSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNV 304 (362)
Q Consensus 225 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (362)
.|.+ ...+.+.....+...++. ++.+++.||+|+|+.+..+..+..++.+.+.+....+ .....+...+.+.
T Consensus 256 --l~~~-~~~~~~~~~~~~~~~v~~-~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~l~gi 327 (428)
T PF13347_consen 256 --LGNE-GLISIFMLIFFVASIVGS-PLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGS----PWLVLILFILAGI 327 (428)
T ss_pred --hcCc-hhhHHHHHHHHHHHHHHH-HHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhh----HHHHHHHHHHhHh
Confidence 4434 456677777777878876 8889999999999999999999888877776665311 1223333334344
Q ss_pred HHHHhhhHHHHHHhhhcc
Q 041273 305 LSVSIMTGLFLLQNRAVS 322 (362)
Q Consensus 305 ~~~~~~~~~~~~~~~~~p 322 (362)
+.........++.+|..+
T Consensus 328 ~~~~~~~~~~a~~ad~id 345 (428)
T PF13347_consen 328 GYGAFFVIPWAMLADVID 345 (428)
T ss_pred hhcccccccccccccchh
Confidence 555556777888888888
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-17 Score=146.99 Aligned_cols=282 Identities=18% Similarity=0.145 Sum_probs=198.1
Q ss_pred Ccccchhhhhhcc----cCC-chHHHHHHHHHHHHHHHHhhhhh------HHHHHHHHHHHhhhcCcc-hhHHHHHHhhh
Q 041273 1 ALTSVLWGMVADR----CGR-KPVIIIGCITVVIFNTLFGLSVS------FWMAIATRFLLGALNGLL-GPIKAYACEIL 68 (362)
Q Consensus 1 ~i~~~~~G~l~Dr----~Gr-r~~l~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~ 68 (362)
++..|+.|.++|| +|| |+.++.+.+..++.+.++..+++ ....++.-.+.+++.... .|-.++.+|..
T Consensus 62 Ai~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT 141 (467)
T COG2211 62 AITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEIT 141 (467)
T ss_pred HHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhc
Confidence 3567999999994 887 56778888999999999888773 455666677888887765 55589999998
Q ss_pred c-cccchhhHHHHHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHH-HHHHHhhcccccC
Q 041273 69 R-DQHKTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFA-VTIASCWIPETLH 146 (362)
Q Consensus 69 ~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~ 146 (362)
+ ++||.+..++.+...++|..+...+...+....++.+...||+ ....+.++++.+ .+..++..+|.+.
T Consensus 142 ~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~---------~~~~~~~vi~~i~~l~~~~~v~ER~~ 212 (467)
T COG2211 142 QDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQ---------GTALVLGVIGVILLLFCFFNVKERVV 212 (467)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHH---------HHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 6 8999999999999999998887777777766444333344443 333555555554 3444455677654
Q ss_pred CCCcCCccccccchhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccc
Q 041273 147 KHNEDGVSLDVSCDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGG 226 (362)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (362)
+..+.++..+ .+...+....+|||+++..++...+.........+.+.+|....
T Consensus 213 ~~~~~~~~~~---------------------~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~----- 266 (467)
T COG2211 213 ETQPTKTGVK---------------------LKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYV----- 266 (467)
T ss_pred ccccCccccc---------------------ccHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEEE-----
Confidence 3222211111 11233455688999999988877777666666666666666555
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 041273 227 LSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLS 306 (362)
Q Consensus 227 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (362)
+|.+.......+.......+++. ++.+++.+|+|+|+.+.++.++..++.+++.+... ......++...+.+.+.
T Consensus 267 lg~~~l~~~~~~~~~~~~~l~~~-~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~----~~~~l~~~~~~i~~~g~ 341 (467)
T COG2211 267 LGDPELFAYLLLLASGAGLLIGL-ILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPA----GSVVLIVVALIIAGVGT 341 (467)
T ss_pred cCChHHHHHHHHHHHHHHHHHHH-HhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcC----cchHHHHHHHHHHHHHh
Confidence 67777777777777666666655 89999999999999999999999888887766662 22223333334444466
Q ss_pred HHhhhHHHHHHhhhcc
Q 041273 307 VSIMTGLFLLQNRAVS 322 (362)
Q Consensus 307 ~~~~~~~~~~~~~~~p 322 (362)
....+..+++++|..+
T Consensus 342 ~~~~~l~wam~~d~vD 357 (467)
T COG2211 342 GIANPLPWAMVADTVD 357 (467)
T ss_pred hccccccHHHhcchhh
Confidence 6667888999999888
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.2e-17 Score=148.35 Aligned_cols=277 Identities=16% Similarity=0.030 Sum_probs=163.7
Q ss_pred Ccccchhhhhhcc----cCCc-hHHHHHHHHHHHHHHHHhhhhh------HHHHHHHHHHHhhhcCcc-hhHHHHHHhhh
Q 041273 1 ALTSVLWGMVADR----CGRK-PVIIIGCITVVIFNTLFGLSVS------FWMAIATRFLLGALNGLL-GPIKAYACEIL 68 (362)
Q Consensus 1 ~i~~~~~G~l~Dr----~Grr-~~l~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~ 68 (362)
++.+|+.|+++|| +||| +.++.+....++...+....++ +.++++..++.+.+.... .|-.++.+|+.
T Consensus 59 ai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t 138 (444)
T PRK09669 59 AVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAIT 138 (444)
T ss_pred HcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhc
Confidence 4678999999998 7874 5666777777777766555442 455666666666654444 44589999998
Q ss_pred -ccccchhhHHHHHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHH-HHHhhcccccC
Q 041273 69 -RDQHKTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVT-IASCWIPETLH 146 (362)
Q Consensus 69 -~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~ 146 (362)
+++||.+..++......+|..+++.+...+....++.....||+ ....+.++++++.. +..+..+|.++
T Consensus 139 ~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~---------~~~~i~~ii~~v~~~~~~~~~~e~~~ 209 (444)
T PRK09669 139 NDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYF---------YAMMVMGLLGVVLFFCCFFMTKERYT 209 (444)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHH---------HHHHHHHHHHHHHHHHHhCCeEEecC
Confidence 46889999999999999998888776655544111111122343 33344555444433 33344455322
Q ss_pred CCCcCCccccccchhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccc
Q 041273 147 KHNEDGVSLDVSCDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGG 226 (362)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (362)
++++ ++ .+..++.++.+|||+++......++............++|....
T Consensus 210 ~~~~--~~-----------------------~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~----- 259 (444)
T PRK09669 210 PEVD--NS-----------------------SSVWKDLKLLLGNSQWRIMFIFNVVLLTAVVTRGGATLYYVNYV----- 259 (444)
T ss_pred CCCc--CC-----------------------CCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhhheeeeee-----
Confidence 2110 00 01234567788999998887776665555444444333332222
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 041273 227 LSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLS 306 (362)
Q Consensus 227 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (362)
.+ +++..+.+.....+..+++. ++.+++.||+|+|+....+.....+....+.+... . ..+. ..+...+.+.+.
T Consensus 260 ~~-~~~~~~~~~~~~~i~~ii~~-~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~-~~~~~~i~g~~~ 333 (444)
T PRK09669 260 LL-RPDLATLFLVTGMIAGLFGA-LLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPP-S--NVWL-IFALNILFNFIQ 333 (444)
T ss_pred cC-CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCc-c--hHHH-HHHHHHHHHHHH
Confidence 22 23333444444445555554 88899999999999988877655543332222211 1 1221 222333344455
Q ss_pred HHhhhHHHHHHhhhcc
Q 041273 307 VSIMTGLFLLQNRAVS 322 (362)
Q Consensus 307 ~~~~~~~~~~~~~~~p 322 (362)
....+..+++++|..|
T Consensus 334 ~~~~~~~~am~ad~~d 349 (444)
T PRK09669 334 NLTTPLQWSMFSDVVD 349 (444)
T ss_pred HHHHHHHHHHHHhhhh
Confidence 5666888999999887
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.4e-17 Score=149.79 Aligned_cols=284 Identities=12% Similarity=0.078 Sum_probs=167.5
Q ss_pred cccchhhhhhc----ccCC-chHHHHHHHHHHHHHHHHhhhh------hHHHHHHHHHHHhhhcCcchhH-HHHHHhhh-
Q 041273 2 LTSVLWGMVAD----RCGR-KPVIIIGCITVVIFNTLFGLSV------SFWMAIATRFLLGALNGLLGPI-KAYACEIL- 68 (362)
Q Consensus 2 i~~~~~G~l~D----r~Gr-r~~l~~~~~~~~~~~~~~~~~~------~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~- 68 (362)
+..|+.|+++| |+|| |+.++.+....+++..++...+ .+.++++.-++.+++.....+. .++..|..
T Consensus 57 i~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~ 136 (473)
T PRK10429 57 INDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTL 136 (473)
T ss_pred HhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCC
Confidence 56899999999 6698 5677778888888766665433 1344555566667766665444 89999998
Q ss_pred ccccchhhHHHHHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHH-HHHHHhhcccccCC
Q 041273 69 RDQHKTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFA-VTIASCWIPETLHK 147 (362)
Q Consensus 69 ~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~ 147 (362)
+++||.+..++.....++|..+.+.+...+.+..++..+..+| .....+.+++.++ .+...+..||.+.+
T Consensus 137 ~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~---------~~~~~i~~~~~~~~~~~~~~~~~e~~~~ 207 (473)
T PRK10429 137 DKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGF---------QMFTLVLIAFFIVSTIITLRNVHEVYSS 207 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhH---------HHHHHHHHHHHHHHHHHHHcCceecCCc
Confidence 5899999999988888887666665554443311110111122 2222444444333 23333446665322
Q ss_pred CCcCCccccccchhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhccccccccc
Q 041273 148 HNEDGVSLDVSCDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGL 227 (362)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (362)
...+++++ ++.+..+..+.++|||+++..+...++............++|.... .
T Consensus 208 ~~~~~~~~--------------------~~~~~~~~~~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~-----~ 262 (473)
T PRK10429 208 DNQVSAEG--------------------SHLTLKDIVALIYKNDQLSCLLGMALAYNIASNIINGFAIYYFTYV-----I 262 (473)
T ss_pred cccccccc--------------------cCCCHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEE-----C
Confidence 11110000 0111234455677899988888777777665555555555343332 2
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 041273 228 SYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLSV 307 (362)
Q Consensus 228 g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (362)
+ ++...+.+....++..+++. ++.+++.||+|+|+.+..+..+..++.+.+.+.........+. ..+...+.+....
T Consensus 263 ~-~~~~~~~~~~~~~i~~ii~~-~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~l~g~~~~ 339 (473)
T PRK10429 263 G-DADLFPYYLSYAGAANLVTL-ILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALL-IVIAGILLNIGTA 339 (473)
T ss_pred C-CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHH-HHHHHHHHHHHHH
Confidence 2 45566777777667777776 8889999999999998888776555544443321111111222 2223333333444
Q ss_pred HhhhHHHHHHhhhcc
Q 041273 308 SIMTGLFLLQNRAVS 322 (362)
Q Consensus 308 ~~~~~~~~~~~~~~p 322 (362)
...+...++++|..|
T Consensus 340 ~~~~~~~am~ad~id 354 (473)
T PRK10429 340 LFWVLQVIMVADTVD 354 (473)
T ss_pred HHHHHHHHHHhhhhh
Confidence 455667888888877
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.3e-16 Score=137.62 Aligned_cols=280 Identities=16% Similarity=0.201 Sum_probs=186.7
Q ss_pred cccchhhhhhcccC-CchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHH
Q 041273 2 LTSVLWGMVADRCG-RKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLST 79 (362)
Q Consensus 2 i~~~~~G~l~Dr~G-rr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~ 79 (362)
+.++++|.++||.+ +||.+.+..++.++........++++.+++.-++..+......|. .++..+... ++++-+|.
T Consensus 52 ~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~ 129 (400)
T PF03825_consen 52 VSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGR 129 (400)
T ss_pred HHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCc
Confidence 46789999999987 477888888877777777778889998888888888776666666 777777775 34566777
Q ss_pred HHHhhhhhhhhhhhh-hhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHhhcccccCCCCcCCcccccc
Q 041273 80 LSTAWGTGLIIGPAV-GGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLHKHNEDGVSLDVS 158 (362)
Q Consensus 80 ~~~~~~~g~~~g~~~-~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 158 (362)
.....++|.+++... ++.+.. ..++... ....++.+...++.....+.+|+.|++++.+++.++
T Consensus 130 iRlwGSiGf~~~~~~~~~~~~~-------~~~~~~~------~~~~~i~~~~~~ll~~~~l~lp~~~~~~~~~~~~~~-- 194 (400)
T PF03825_consen 130 IRLWGSIGFIVAALAFGGLLGG-------YLGISGT------SLIFYIAAILSLLLAGFALFLPKTPPKRSAKESVKK-- 194 (400)
T ss_pred chhhhhHHHHHHHHHHHHHHHh-------hhccccc------cHHHHHHHHHHHHHHHHHHhCCCCccccccCCCccc--
Confidence 778888888777554 233332 1111111 111233444444444445667877633222111111
Q ss_pred chhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccC-CCchhhHHH
Q 041273 159 CDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLS-YSTENAGQV 237 (362)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~s~~~~g~~ 237 (362)
....+..+++|||++....+..++.......+.++.+.|+++. | .+....|.+
T Consensus 195 --------------------~~~~~~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~------gg~~~~~~g~~ 248 (400)
T PF03825_consen 195 --------------------LLGLDALKLLKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQEL------GGYSGSTIGIL 248 (400)
T ss_pred --------------------ccchHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------ccchhhHHHHH
Confidence 0223445789999999988888888888888888888888764 5 677778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 041273 238 LAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMTGLFLLQ 317 (362)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (362)
.++..+..++.- ...+++.+|+|.++++.++....++=..++.+..... +..+....+...+.+..-.....+...++
T Consensus 249 ~~l~~~aEi~~f-~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~-~~~~~~~~l~q~lhG~tf~~~~~a~~~yi 326 (400)
T PF03825_consen 249 WALGVVAEIPFF-FFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPW-PFIVALQLLGQLLHGLTFGLFHAASVRYI 326 (400)
T ss_pred HHHHHHHHHHHH-HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCc-HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 888778888875 8899999999999999999988887777776552211 12222222323344444455567778899
Q ss_pred hhhcccccc
Q 041273 318 NRAVSQKRQ 326 (362)
Q Consensus 318 ~~~~p~~~~ 326 (362)
++.+|++..
T Consensus 327 ~~~~p~~~~ 335 (400)
T PF03825_consen 327 DRIAPPELR 335 (400)
T ss_pred HHhCCccch
Confidence 999985443
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.5e-17 Score=148.71 Aligned_cols=300 Identities=13% Similarity=0.056 Sum_probs=168.4
Q ss_pred cchhhhhhcc-cCCchHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHhhhcCcchhH-HHHHHhhhcccc--chhhHH
Q 041273 4 SVLWGMVADR-CGRKPVIIIGCITVVIFNTLFGLSV-SFWMAIATRFLLGALNGLLGPI-KAYACEILRDQH--KTLGLS 78 (362)
Q Consensus 4 ~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~--r~~~~~ 78 (362)
.+++|+++|| +|||+.+..+.++.+++..++++++ +.+.+.+.|+++|++.|...+. .+++.|++|+++ |.++++
T Consensus 74 ~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~ 153 (500)
T PRK09584 74 VAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFT 153 (500)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcch
Confidence 4678999999 5999999999999999999998874 5667778899999999988777 899999998643 456889
Q ss_pred HHHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHH---H-HHHHhhcccccCCCCcCCcc
Q 041273 79 TLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFA---V-TIASCWIPETLHKHNEDGVS 154 (362)
Q Consensus 79 ~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~e~~~~~~~~~~~ 154 (362)
+++.+.++|..+||.+++++.+ ..|||+.| .+.++..++ . +.....++|..++.+.++.+
T Consensus 154 ~~~~~~~iG~~~gp~i~g~l~~-------~~g~~~~F---------~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~ 217 (500)
T PRK09584 154 MYYMSINIGSFFSMLATPWLAA-------KYGWSVAF---------ALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPIN 217 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------hhCHHHHH---------HHHHHHHHHHHHHHHHhHHHhccCCCCCCccccc
Confidence 9999999999999999999988 78888777 333322222 1 22233445432211111111
Q ss_pred ccccch---------hhhhhcCCCCccccc----------cC-cccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHH
Q 041273 155 LDVSCD---------ALESACGSNAEFKQD----------EG-SEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIF 214 (362)
Q Consensus 155 ~~~~~~---------~~~~~~~~~~~~~~~----------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (362)
...... ........+.+.... .. ........+. .+++.+..+... +............
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~i~f~~~~~q~ 295 (500)
T PRK09584 218 YRKLLLTIVGVVALIAIATWLLHNQEIARMALGVVALGIVVIFGKEAFAMKGA-ARRKMIVAFILM-LEAIIFFVLYSQM 295 (500)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhcCHH-HHHHHHHHHHHH-HHHHHHHHHHHHh
Confidence 000000 000000000000000 00 0000000011 112222222221 1112222222222
Q ss_pred HhHhcc----cccccccCCCchhhHHHHHHHHHHHHHHHHHHH----HHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhh
Q 041273 215 SLWAIS----PWKYGGLSYSTENAGQVLAISGFSLLVFQLTLY----PYVERMIGPIIITRIAGVLSIPLLTSYTYIAML 286 (362)
Q Consensus 215 ~~~~~~----~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~----~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (362)
+.++.. ....+..|+. ...+.+.+..++..++.+ ++. +++.||.+..+.+.++..+.+++.+.+......
T Consensus 296 ~~~l~~~~~~~~~~~~~g~~-i~~~~~~s~n~i~iil~~-p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~ 373 (500)
T PRK09584 296 PTSLNFFAIRNVEHSILGIA-VEPEQYQALNPFWIMIGS-PILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKF 373 (500)
T ss_pred ccHHHHHHHHhccccccceE-ECHHHHHHHhHHHHHHHH-HHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 322221 1100101211 224555666666666665 444 455555556677888888888887776655432
Q ss_pred hh---hhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhccc
Q 041273 287 SG---FSLALLINCASVMKNVLSVSIMTGLFLLQNRAVSQ 323 (362)
Q Consensus 287 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 323 (362)
.+ ............+.+.+.....|...+++.+..|+
T Consensus 374 ~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~ 413 (500)
T PRK09584 374 ANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQ 413 (500)
T ss_pred cCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcH
Confidence 11 11122344556666778888889999999999994
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.3e-16 Score=131.49 Aligned_cols=266 Identities=15% Similarity=0.094 Sum_probs=197.2
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTL 80 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~ 80 (362)
+.+++..+++.|+|.++.+..++++.+++..+-... +.+.++..-.+.|.+.+...+. .+++.+.+|+ +-+..++++
T Consensus 62 ~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk-~~~~mtglY 139 (395)
T COG2807 62 LFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPK-RVGLMTGLY 139 (395)
T ss_pred HHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhccc-chhhHHhHH
Confidence 467889999999999999999999999999998887 7788888999999999988887 9999999975 569999999
Q ss_pred HHhhhhhhhhhhhhhhhhcCccccCCccc-ccccccccccchhhHHHHHHHHHHHHHHHhhcccccCCCCcCCccccccc
Q 041273 81 STAWGTGLIIGPAVGGFLAQPAEKYPKAF-SKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLHKHNEDGVSLDVSC 159 (362)
Q Consensus 81 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~-gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 159 (362)
....++|..+++.+.-.+.+ +. |||... ..=+.++++.++. ++|...+++..+.+ .
T Consensus 140 s~sl~~~aaLaa~lavpla~-------~~~gW~~aL---------~~WAl~allAl~~--WlPq~~r~~~~~~~--~--- 196 (395)
T COG2807 140 STSLGAGAALAAALAVPLAQ-------HSGGWRGAL---------GFWALLALLALLI--WLPQALREQAASIA--T--- 196 (395)
T ss_pred HHHHHHHHHHHhhhhhHHHH-------hhccHHHHH---------HHHHHHHHHHHHH--Hhhhcccccccccc--c---
Confidence 99999999999999999887 44 687655 3334455444443 44443222111110 0
Q ss_pred hhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHHH
Q 041273 160 DALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLA 239 (362)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~ 239 (362)
...+..+++|+|.-|...+.+.+.+...+....++|.++.+ .|+|+.+.|.+.+
T Consensus 197 --------------------~~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~------~G~sa~~aG~lls 250 (395)
T COG2807 197 --------------------KLVSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILID------RGLSAAEAGSLLS 250 (395)
T ss_pred --------------------ccccccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHH------cCCCHHHhhhHHH
Confidence 11234568999999999999999999999999999988877 4999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc-hhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHh
Q 041273 240 ISGFSLLVFQLTLYPYVERMIG-PIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMTGLFLLQN 318 (362)
Q Consensus 240 ~~~~~~~~~~~~~~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (362)
...+..+..+ +..+.+.+|.. +|........++.++...+.+.+... ...| . .+.+......+|...+++.
T Consensus 251 l~~l~~~~~~-ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~-~~lw---~---~llG~G~G~~F~laL~li~ 322 (395)
T COG2807 251 LMQLAQLPTA-LLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQL-PILW---A---LLLGLGQGGAFPLALTLIL 322 (395)
T ss_pred HHHHHHHHHH-HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhH-HHHH---H---HHHhCccchHHHHHHHHHH
Confidence 9999999998 89999999765 45555555555556665555443221 1222 1 2222344556677777777
Q ss_pred hhcccccc
Q 041273 319 RAVSQKRQ 326 (362)
Q Consensus 319 ~~~p~~~~ 326 (362)
...++.+.
T Consensus 323 ~rs~~a~~ 330 (395)
T COG2807 323 LRSSDAAI 330 (395)
T ss_pred hhcCChHH
Confidence 76665444
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.8e-16 Score=135.97 Aligned_cols=245 Identities=13% Similarity=0.104 Sum_probs=166.1
Q ss_pred hhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHHHHhhhhhhhhhhhhhhhhcCccccCC-------
Q 041273 35 GLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYP------- 106 (362)
Q Consensus 35 ~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~------- 106 (362)
+..++++.++++-++.|.|.+...++ ..++++..++|++.+.+++.+...++|..+||.+++.+........
T Consensus 5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~ 84 (310)
T TIGR01272 5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA 84 (310)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence 34578999999999999999998888 9999999999999999999999999999999999998874211000
Q ss_pred --cccccccccccccchhhHHHHHHHHHHHHHHHh--hcccccCCCCcCCccccccchhhhhhcCCCCccccccCcccch
Q 041273 107 --KAFSKESMFGKFPYFLPCLCMSLFAFAVTIASC--WIPETLHKHNEDGVSLDVSCDALESACGSNAEFKQDEGSEEAT 182 (362)
Q Consensus 107 --~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (362)
+..+|+..+ ++.+.+.++..+.+. .+||.++++++ +..+ + +..
T Consensus 85 ~~~~~~~~~~y---------l~ia~~~~~~~i~~~~~~~p~~~~~~~~--~~~~--------------------~--~~~ 131 (310)
T TIGR01272 85 NAEAAKVHTPY---------LLLAGALAVLAIIFAFLPLPELQEADVA--RVSS--------------------G--DTT 131 (310)
T ss_pred hHHHHHHHHHH---------HHHHHHHHHHHHHHHHccCCCCCccccc--cccc--------------------c--ccc
Confidence 012333322 433333333222332 34553221110 0000 0 001
Q ss_pred hhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 041273 183 AKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGP 262 (362)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~ 262 (362)
+.++.+|+|+++...+..+++.....+..++++.|+.+. +.+|+++.+.+...+....+.++++ ++.+++.||+++
T Consensus 132 ~~~~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~---~~~g~s~~~a~~~~s~~~~~~~iGr-~~~~~l~~r~g~ 207 (310)
T TIGR01272 132 QKTSAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDP---HALGLPEDQAAHFTAYTWGGAMVGR-FIGSAVMPMISQ 207 (310)
T ss_pred chhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCH
Confidence 123457788888888888888878889899999998643 1268899999999999999999998 999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhccc
Q 041273 263 IIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMTGLFLLQNRAVSQ 323 (362)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 323 (362)
++.+..+..+..+..++....+. ..... ...+.+.+....+|...+...+..|+
T Consensus 208 ~~~l~~~~~l~~~~~~l~~~~~~---~~~~~----~~~l~g~~~s~i~P~~~s~a~~~~~~ 261 (310)
T TIGR01272 208 GRYLAFNAFLAVLLSIGAALTHG---YVAMW----FVLALGLFNSIMFPTIFSLALNALGR 261 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC---HHHHH----HHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99888887776665543332221 11111 12233345566778878777777664
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.8e-15 Score=137.27 Aligned_cols=323 Identities=15% Similarity=0.121 Sum_probs=207.5
Q ss_pred cccchhhhhhcccCCchHHH-HHHHHHHHHHHHHhhh-hhHHHHH-HHHHHHhhhcCcchhH-HHHHHhhhccccc----
Q 041273 2 LTSVLWGMVADRCGRKPVII-IGCITVVIFNTLFGLS-VSFWMAI-ATRFLLGALNGLLGPI-KAYACEILRDQHK---- 73 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~-~~~~~~~~~~~~~~~~-~~~~~l~-~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r---- 73 (362)
+..|+.|.++|+-|+||.++ +..++..+++..+.+. ++-+++. +.-++.-++.+...+. .+++.|..+++++
T Consensus 85 ll~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~LP~la~~~~~~~~~ 164 (477)
T PF11700_consen 85 LLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYLPDLARPEPRVRAA 164 (477)
T ss_pred HHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChhhhhh
Confidence 45789999999999776554 4555555666666664 3334333 3334444455555566 9999999998888
Q ss_pred ----------------------hhhHHHHHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHH
Q 041273 74 ----------------------TLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFA 131 (362)
Q Consensus 74 ----------------------~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~ 131 (362)
++..+.-.....+|.++.-.+.-.+....+.. .=..++.++...+.++.-
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~--------~~~~~~~r~~~~~~a~ww 236 (477)
T PF11700_consen 165 REPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGST--------ASNTWAIRVAFLIVALWW 236 (477)
T ss_pred hhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCc--------cccchhhhHHHHHHHHHH
Confidence 89999888888899888877776664421111 000223344445555554
Q ss_pred HH-HHHHHhhcccccCCCCcCCccccccchhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHH
Q 041273 132 FA-VTIASCWIPETLHKHNEDGVSLDVSCDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAY 210 (362)
Q Consensus 132 ~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (362)
++ .+...+++||.++++..++.... .....+ +.....+++.|.|+....++.++++.-...+.
T Consensus 237 ~vfsiP~~~~~~~~~~~~~~~~~~~~-~~~g~~---------------~l~~t~k~~~~~~~~~~fLia~~l~~dg~~ti 300 (477)
T PF11700_consen 237 LVFSIPLFLWLPDRPGPRPLPSGSSY-LRFGFK---------------RLWRTFKEIRKLRQLFLFLIAYFLYSDGVNTI 300 (477)
T ss_pred HHHHHHHHHhCCCCCCCCCCCcchhH-HHHHHH---------------HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 43 45555678887663221111100 000000 12345667778888999999988888777777
Q ss_pred HHHHHhHhcccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchh--HHHHHHHHHHHHHHHH--HHHHHhh
Q 041273 211 TEIFSLWAISPWKYGGLSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPI--IITRIAGVLSIPLLTS--YTYIAML 286 (362)
Q Consensus 211 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~--~~~~~~~~~~~~~~~~--~~~~~~~ 286 (362)
..+..+|..+. +|++..+...+..+..+.+++++ ++.+++.||+|.| +++..+.....+..+. +++....
T Consensus 301 ~~~~~i~a~~~-----lg~s~~~l~~~~l~~~i~a~~Ga-~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~ 374 (477)
T PF11700_consen 301 ISFAGIYATEV-----LGMSTTQLIVFGLVVQIVAIIGA-LLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSF 374 (477)
T ss_pred HHHHHHHHHHh-----cCcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 77888887766 89999999999999999999998 8999999999998 7766666555332211 1111111
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhccccccCCCCCC-----------------------C-hhHHHHHHH
Q 041273 287 SGFSLALLINCASVMKNVLSVSIMTGLFLLQNRAVSQKRQGAGFLP-----------------------G-NQMIFFILN 342 (362)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-----------------------g-~~~~f~~~~ 342 (362)
.+......+++...+.+.+....++...++.++..|++|.+..+.- | .+..+....
T Consensus 375 ~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~ 454 (477)
T PF11700_consen 375 FGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLL 454 (477)
T ss_pred cCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHH
Confidence 1111111233344444445566778889999999998887543211 2 578888888
Q ss_pred HHHHHHHHhhcc
Q 041273 343 LVEALGVILTFK 354 (362)
Q Consensus 343 ~~~~i~~~~~~~ 354 (362)
++.+++.++.+.
T Consensus 455 ~lf~~gl~ll~~ 466 (477)
T PF11700_consen 455 VLFLIGLILLFF 466 (477)
T ss_pred HHHHHHHHHHhh
Confidence 888888887765
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.9e-15 Score=136.90 Aligned_cols=276 Identities=14% Similarity=0.052 Sum_probs=160.5
Q ss_pred Ccccchhhhhhcc----cCCc-hHHHHHHHHHHHHHHHHhhhhh------HHHHHHHHHHHhhhcCcc-hhHHHHHHhhh
Q 041273 1 ALTSVLWGMVADR----CGRK-PVIIIGCITVVIFNTLFGLSVS------FWMAIATRFLLGALNGLL-GPIKAYACEIL 68 (362)
Q Consensus 1 ~i~~~~~G~l~Dr----~Grr-~~l~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~ 68 (362)
++..|+.|+++|| +||| +.++++....+++..++...++ ...+.+.-.+..++.... .|-.++..|..
T Consensus 59 ai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt 138 (460)
T PRK11462 59 AISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVIT 138 (460)
T ss_pred HHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhc
Confidence 3567999999995 7886 5566777888888777665542 344555556667766655 44489999998
Q ss_pred c-cccchhhHHHHHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHH-HHHhhcccccC
Q 041273 69 R-DQHKTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVT-IASCWIPETLH 146 (362)
Q Consensus 69 ~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~ 146 (362)
+ +|||++..++...+.++|..+++.+...+.+..++.+...|| .....+.+++.++.. +.....+|.++
T Consensus 139 ~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~---------~~~~~i~~ii~~i~~~i~~~~~kE~~~ 209 (460)
T PRK11462 139 NDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGF---------QGGIAVLSVVAFMMLAFCFFTTKERVE 209 (460)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhH---------HHHHHHHHHHHHHHHHHHHhcceeccC
Confidence 7 899999999999999999888888766655421111111233 222244444443333 22233455322
Q ss_pred CCCcCCccccccchhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccc
Q 041273 147 KHNEDGVSLDVSCDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGG 226 (362)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (362)
.++ ++. +..+..+..++||.++......++.............+|....
T Consensus 210 ~~~---~~~-----------------------~~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~----- 258 (460)
T PRK11462 210 APP---TTT-----------------------SMREDLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWI----- 258 (460)
T ss_pred CCc---cCC-----------------------CHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhh-----
Confidence 111 000 0234556778899888776665555554444444444444332
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 041273 227 LSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLS 306 (362)
Q Consensus 227 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (362)
.+ ++...+.+.....+..+++. ++++++.||+++|+....+.....+...++.+....+ ...... ...+.+...
T Consensus 259 ~g-~~~~~~~~l~~~~i~~iig~-~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~l~g~~~ 332 (460)
T PRK11462 259 LG-TPEVFVAFLTTYCVGNLIGS-ALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQA-SITMFV---FIFVIGVLH 332 (460)
T ss_pred cC-ChHHHHHHHHHHHHHHHHHH-HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhH-HHHHHH---HHHHHHHHH
Confidence 23 23344556667777777776 8899999999999887655444333333332222111 111111 112222233
Q ss_pred HHhhhHHHHHHhhhcc
Q 041273 307 VSIMTGLFLLQNRAVS 322 (362)
Q Consensus 307 ~~~~~~~~~~~~~~~p 322 (362)
....+..+.+++|..+
T Consensus 333 ~~~~~l~~~m~ad~~d 348 (460)
T PRK11462 333 QLVTPIQWVMMSDTVD 348 (460)
T ss_pred HHHHHHHHHHHHHhHh
Confidence 3344555677787777
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.6e-15 Score=135.07 Aligned_cols=107 Identities=21% Similarity=0.330 Sum_probs=86.5
Q ss_pred cccchhhhhhccc-CCchHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccc--cchhh
Q 041273 2 LTSVLWGMVADRC-GRKPVIIIGCITVVIFNTLFGLSV-SFWMAIATRFLLGALNGLLGPI-KAYACEILRDQ--HKTLG 76 (362)
Q Consensus 2 i~~~~~G~l~Dr~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~--~r~~~ 76 (362)
++++++|+++||+ ||||++.++.++.+++.++++..+ +...+.+...+.+++.|...+. .++++|.+|++ +|..+
T Consensus 60 l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sg 139 (493)
T PRK15462 60 VTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGG 139 (493)
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccce
Confidence 4578999999999 999999999999999987776543 2233444444455666766665 88999999875 79999
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhcCccccCCccccccccc
Q 041273 77 LSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMF 115 (362)
Q Consensus 77 ~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~ 115 (362)
+++.....++|..++|.+.+++.+ ..|||..|
T Consensus 140 f~i~Y~~~nlG~~iap~l~g~L~~-------~~Gw~~~F 171 (493)
T PRK15462 140 FSLMYAAGNVGSIIAPIACGYAQE-------EYSWAMGF 171 (493)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHh-------hhChHHHH
Confidence 999999999999999999999988 77887776
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.9e-15 Score=139.09 Aligned_cols=95 Identities=16% Similarity=0.157 Sum_probs=83.5
Q ss_pred ccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhh------hhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchh
Q 041273 3 TSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLS------VSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTL 75 (362)
Q Consensus 3 ~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~------~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~ 75 (362)
++++.|+++||+|||+++.++.+++.++.++++++ ++++.+++.|++.|++.+...+. ...+.+++| ++||+
T Consensus 77 ~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~ 155 (591)
T PTZ00207 77 FLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGA 155 (591)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHH
Confidence 45689999999999999999999999999999987 68999999999999998887666 888899986 78999
Q ss_pred hHHHHHHhhhhhhhh-hhhhhhhh
Q 041273 76 GLSTLSTAWGTGLII-GPAVGGFL 98 (362)
Q Consensus 76 ~~~~~~~~~~~g~~~-g~~~~~~l 98 (362)
+.++...+.++|..+ +++..+++
T Consensus 156 a~Gi~~~~~gLGsaI~~~l~~~l~ 179 (591)
T PTZ00207 156 VVAIMKTFTGLGSAILGSIQLAFF 179 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999975 55555544
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.7e-15 Score=130.51 Aligned_cols=307 Identities=12% Similarity=0.122 Sum_probs=174.7
Q ss_pred cccchhhhhhcccCCchHHHHHHHHH--HHHH-HHHhhhhhH-HHHHHHHHHHhh----hcCcchhH-HHHHHhhhcccc
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITV--VIFN-TLFGLSVSF-WMAIATRFLLGA----LNGLLGPI-KAYACEILRDQH 72 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~--~~~~-~~~~~~~~~-~~l~~~r~l~G~----~~~~~~~~-~~~i~~~~~~~~ 72 (362)
+.+|+.|.++||+|.||-++...... ..+. +...+.+-. ..+.+.-++.|+ .-....|. .+++.+.. ++
T Consensus 58 ~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~ 135 (412)
T PF01306_consen 58 LAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RR 135 (412)
T ss_dssp HTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HH
T ss_pred HHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HH
Confidence 45789999999999766544333222 1222 222232211 111222233333 33333444 55555554 23
Q ss_pred chhhHHHHHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHhhc-ccccCCCCcC
Q 041273 73 KTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWI-PETLHKHNED 151 (362)
Q Consensus 73 r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~~~~~~ 151 (362)
.+.-+|-.....++|.+++..++|.+.+.. - ....++....+++..+..... |+.+++.+..
T Consensus 136 ~~feYG~~R~wGSig~ai~s~~~G~L~~i~--------p---------~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~ 198 (412)
T PF01306_consen 136 NGFEYGRARMWGSIGFAIASLLAGILFNIN--------P---------NIIFWIASAAAIILLLLLLLLKPDVPPQAEVA 198 (412)
T ss_dssp HSS-HHHHHHHHHHHHHHHHHHHHHHHHHH--------H---------HHHHHHHHHHHHHHHHHHHSS---SSSSS-SS
T ss_pred hcCCcchHHHHhhHHHHHHHHHhheeeeeC--------c---------cHHHHHHHHHHHHHHHHHHHcCCcCchhhhhh
Confidence 456678888889999999999999998611 1 122234444444433333333 3333221111
Q ss_pred CccccccchhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCc
Q 041273 152 GVSLDVSCDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYST 231 (362)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~ 231 (362)
+.+.. ++++...++..+++|+|++|...+...........+...++.|....... .+.+.
T Consensus 199 ~~~~~------------------~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~--~~~g~ 258 (412)
T PF01306_consen 199 DALGA------------------KKDKVSLKDVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQS--AGQGN 258 (412)
T ss_dssp TTSSS------------------------HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSS--HHHHH
T ss_pred ccccc------------------CCCCCcHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cccCh
Confidence 11000 00011224567889999999888766665555566666677776554221 24456
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 041273 232 ENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMT 311 (362)
Q Consensus 232 ~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (362)
...|.+.+..-+...+.. ...+++.+|+|.|+.+.++..++.+=....++.++.. .+...-.+...--.....
T Consensus 259 ~~~G~l~s~~v~~E~~~m-~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~------~i~~~klLH~~e~~l~lv 331 (412)
T PF01306_consen 259 QMYGYLWSVQVFLEALMM-FFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPW------VISLIKLLHALEFPLLLV 331 (412)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHH------HHHHHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHHHH-HHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchH------HHHHHHHHHHHHHHHHHH
Confidence 678998888888888876 8999999999999999999888887777666555422 223333333333344455
Q ss_pred HHHHHHhhhccccccCCCC-----CC-------------------ChhHHHHHHHHHHHHHHHhhcc
Q 041273 312 GLFLLQNRAVSQKRQGAGF-----LP-------------------GNQMIFFILNLVEALGVILTFK 354 (362)
Q Consensus 312 ~~~~~~~~~~p~~~~~~~~-----~~-------------------g~~~~f~~~~~~~~i~~~~~~~ 354 (362)
+..-++++.+|++-....+ .. |++..|++.+.+.+...++..+
T Consensus 332 a~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f 398 (412)
T PF01306_consen 332 AAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAF 398 (412)
T ss_dssp HHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHhee
Confidence 6677788888844322111 00 5778999999998888777765
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-14 Score=132.89 Aligned_cols=272 Identities=16% Similarity=0.114 Sum_probs=153.8
Q ss_pred cccchhhhhhccc----CCchHH-HHHHHHHHHHHHHHh-h----hh--hHHHHHHHHHHHhhhcCcchhH-HHHHHhhh
Q 041273 2 LTSVLWGMVADRC----GRKPVI-IIGCITVVIFNTLFG-L----SV--SFWMAIATRFLLGALNGLLGPI-KAYACEIL 68 (362)
Q Consensus 2 i~~~~~G~l~Dr~----Grr~~l-~~~~~~~~~~~~~~~-~----~~--~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~ 68 (362)
+.+++.|+++||. ||||.. ..+.+...+...+.. . ++ ..+..+..-++.+++.+...+. .++..|..
T Consensus 59 ~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~ 138 (448)
T PRK09848 59 FADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMT 138 (448)
T ss_pred HhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhc
Confidence 5789999999986 777644 556555554444432 1 11 2233444556667777766554 77777776
Q ss_pred c-cccchhhHHHHHHhhh-----hhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHH-HHHHHhhc
Q 041273 69 R-DQHKTLGLSTLSTAWG-----TGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFA-VTIASCWI 141 (362)
Q Consensus 69 ~-~~~r~~~~~~~~~~~~-----~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 141 (362)
+ ++||.+..+....+.+ ++..++|.++....+.. ......|+ .+.++++++ .++.....
T Consensus 139 ~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~--~~~~~~~~------------~~~~v~~~~~~~~~~~~~ 204 (448)
T PRK09848 139 QQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEM--VSVYHFWT------------IVLAIAGMVLYFICFKST 204 (448)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCch--hhhHHHHH------------HHHHHHHHHHHHHHHcCc
Confidence 5 5788888776655433 44555665554332100 00011111 222223222 22233345
Q ss_pred ccccCCCCcCCccccccchhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhccc
Q 041273 142 PETLHKHNEDGVSLDVSCDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISP 221 (362)
Q Consensus 142 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (362)
||+++++.++ .. ..+..++++|||+++...+..++............+.|..+.
T Consensus 205 ~e~~~~~~~~---~~-----------------------~~~~~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (448)
T PRK09848 205 RENVVRIVAQ---PS-----------------------LKISLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYV 258 (448)
T ss_pred EeccCCCccC---CC-----------------------HHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeee
Confidence 5543221110 01 233567789999998888877777666666655666665544
Q ss_pred ccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 041273 222 WKYGGLSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVM 301 (362)
Q Consensus 222 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (362)
+|.++...+.......+..+++. ++.+++.||+++|+.+..+..+..++.+.+.+... . ..+. ......+
T Consensus 259 -----~g~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~-~--~~~~-~~~~~~l 328 (448)
T PRK09848 259 -----LNDTGLFTVLVLVQNLVGTVASA-PLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSV-W--SLPV-ALVALAI 328 (448)
T ss_pred -----cCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCc-h--hHHH-HHHHHHH
Confidence 56665554444444345556665 88899999999999999998877777665543221 1 1222 2222333
Q ss_pred HHHHHHHhhhHHHHHHhhhccc
Q 041273 302 KNVLSVSIMTGLFLLQNRAVSQ 323 (362)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~p~ 323 (362)
.+.+.....+...++.++..|.
T Consensus 329 ~g~G~~~~~~~~~al~~~~~~~ 350 (448)
T PRK09848 329 ASIGQGVTMTVMWALEADTVEY 350 (448)
T ss_pred HHHHHHHHHHHHHHHHHHhhhh
Confidence 3334445556777888888773
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.68 E-value=1e-13 Score=119.48 Aligned_cols=307 Identities=15% Similarity=0.110 Sum_probs=183.8
Q ss_pred cchhhhhhcccC-----CchH-HHHHHHHHHHHHHHHhhh-----h-------h--HH--HHHHHHHHHhhhcCcchhH-
Q 041273 4 SVLWGMVADRCG-----RKPV-IIIGCITVVIFNTLFGLS-----V-------S--FW--MAIATRFLLGALNGLLGPI- 60 (362)
Q Consensus 4 ~~~~G~l~Dr~G-----rr~~-l~~~~~~~~~~~~~~~~~-----~-------~--~~--~l~~~r~l~G~~~~~~~~~- 60 (362)
.+.+|+.||+.+ ||.. +..|.+....+..+..++ . + .+ ...+.-.+.|+|.+...+.
T Consensus 31 R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~ 110 (403)
T PF03209_consen 31 RVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGLALAALAFLLYGLGVHASGTSF 110 (403)
T ss_pred HHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHhhHhHhHHHH
Confidence 467899999988 7754 555666666665555432 2 1 22 2233455678888887777
Q ss_pred HHHHHhhhccccchhhHHHHHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHH--HHHHHHHHHHH
Q 041273 61 KAYACEILRDQHKTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCM--SLFAFAVTIAS 138 (362)
Q Consensus 61 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 138 (362)
.++++|..|||+|+++.++...+.-+|.+++..+.+.+.+. +.-. ++.-.+. +++.+..-+.-
T Consensus 111 lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~-------~s~~--------rL~~v~~~~a~i~~~l~~ia 175 (403)
T PF03209_consen 111 LALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDP-------FSPE--------RLIQVIQGVALIALLLNLIA 175 (403)
T ss_pred HHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccc-------cCHH--------HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998872 1111 1111111 12222211222
Q ss_pred hhcccccCCCCcCCccccccchhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHh
Q 041273 139 CWIPETLHKHNEDGVSLDVSCDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWA 218 (362)
Q Consensus 139 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (362)
.+-.|.+.++..+.++ +++....+.++++..+|+.+......++.......-..+
T Consensus 176 ~wg~E~r~~~~~~~~~--------------------~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~~QD~i----- 230 (403)
T PF03209_consen 176 LWGQEPRRSRRAAAAE--------------------RPRPPFREAWRQVWASPQARRFFVFLFLGTLAFFMQDVI----- 230 (403)
T ss_pred HHhcccCCcccccCCC--------------------CCCccHHHHHHHHHhCCChhHHHHHHHHHHHHHHhhHHH-----
Confidence 2233332222210111 111123456677788888887777666554444333322
Q ss_pred cccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHH-HHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 041273 219 ISPWKYGGLSYSTENAGQVLAISGFSLLVFQLTLYPYV-ERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINC 297 (362)
Q Consensus 219 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (362)
.+++.-+-+|++..+...+....+.+..++- ...+++ .+|.++++...++.....+++.++.......+ .+.....
T Consensus 231 LEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~-~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~--~~~~~~~ 307 (403)
T PF03209_consen 231 LEPYGGEVFGMSVGETTRLTAFWGGGTLLGM-LLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGS--PWLFRPG 307 (403)
T ss_pred cCCchhHHcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhccc--chHHHHH
Confidence 3444344489999999999999999988886 455544 45788888888888888887766655544332 2222222
Q ss_pred HHHHHHHHHHHhhhHHHHHHhhhccccccC--------------------------------C-CCCCChhHHHHHHHHH
Q 041273 298 ASVMKNVLSVSIMTGLFLLQNRAVSQKRQG--------------------------------A-GFLPGNQMIFFILNLV 344 (362)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--------------------------------~-~~~~g~~~~f~~~~~~ 344 (362)
...+ ++.+........+...+..++++.+ + ....+|..+|.+-++.
T Consensus 308 ~~l~-G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~l 386 (403)
T PF03209_consen 308 VFLL-GLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVL 386 (403)
T ss_pred HHHH-HHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 2222 2222222233344444544433221 1 1233678888888888
Q ss_pred HHHHHHhhcc
Q 041273 345 EALGVILTFK 354 (362)
Q Consensus 345 ~~i~~~~~~~ 354 (362)
.+++..+...
T Consensus 387 l~~a~~ll~~ 396 (403)
T PF03209_consen 387 LLAALVLLGR 396 (403)
T ss_pred HHHHHHHHHH
Confidence 8888776654
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.5e-15 Score=131.17 Aligned_cols=287 Identities=18% Similarity=0.302 Sum_probs=186.3
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcC---cchhHHHHHHhhhccccchhhHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNG---LLGPIKAYACEILRDQHKTLGLS 78 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~---~~~~~~~~i~~~~~~~~r~~~~~ 78 (362)
+.++..|.++||+|||..+........+......+.. |++++ +.++..+ ......++++|...+++|...++
T Consensus 77 i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~--~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~g 151 (463)
T KOG2816|consen 77 ISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG--YWFFL---LLGLSGGFSAIFSVGFAYVADISSEEERSSSIG 151 (463)
T ss_pred HHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH--HHHhh---hcccccchhhhhhhhhhheeeccchhHHHHHHH
Confidence 3578899999999999999999999888888777766 33333 5555333 33444999999999999999999
Q ss_pred HHHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHH-HHHHHhhcccccCCCCcCCccccc
Q 041273 79 TLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFA-VTIASCWIPETLHKHNEDGVSLDV 157 (362)
Q Consensus 79 ~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~ 157 (362)
+.+.....+..++|.+++.+.+ ..++..++.+.++..++ .......+||+..+++++.....
T Consensus 152 ll~~~~~~~~~~~p~~~~~~~~----------------~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~- 214 (463)
T KOG2816|consen 152 LLSGTFGAGLVIGPALGGYLVK----------------FLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLR- 214 (463)
T ss_pred HHHHHHHHHHhHHHHHHHHHHH----------------hcCchHHHHHHHHHHHHHHHHHhhccccccCcccccccccc-
Confidence 9999999999999999999987 34455555777776666 44555778998665443311000
Q ss_pred cchhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHh-HHHHHHHhHhcccccccccCCCchhhHH
Q 041273 158 SCDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDI-AYTEIFSLWAISPWKYGGLSYSTENAGQ 236 (362)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~s~~~~g~ 236 (362)
..+. .........+.....++.-.+|..+.+............ ......+.|+... ++++..+.+.
T Consensus 215 ---~~~~-----~~~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~-----f~w~~~~~s~ 281 (463)
T KOG2816|consen 215 ---ELTP-----GSLDSSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAK-----FGWNKKEFSD 281 (463)
T ss_pred ---ccCC-----CcccchhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeee-----cCcCHHHHHH
Confidence 0000 000000001111122222223344443333333222221 1111223444444 8999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 041273 237 VLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMTGLFLL 316 (362)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (362)
+.+..+....+.+.+..+.+.+.++.++....|+....+....+.+....+ ..+.. ...........|+..+.
T Consensus 282 ~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w--~~~~~-----~v~~~~~~~~~pa~~s~ 354 (463)
T KOG2816|consen 282 LLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETW--MMFAA-----GVVVALAGIVFPAIRAF 354 (463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccch--hhhHH-----HHHHHhhcchhHHHHhH
Confidence 999999999999988888999999999988888888888888877776433 11111 11112334556777888
Q ss_pred HhhhccccccCCCC
Q 041273 317 QNRAVSQKRQGAGF 330 (362)
Q Consensus 317 ~~~~~p~~~~~~~~ 330 (362)
.+...+.++++..+
T Consensus 355 ~s~~v~~~e~g~v~ 368 (463)
T KOG2816|consen 355 ASILVSPEEQGKVF 368 (463)
T ss_pred HHhhcccccccchh
Confidence 88877766665443
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.6e-14 Score=120.37 Aligned_cols=316 Identities=9% Similarity=0.009 Sum_probs=195.4
Q ss_pred cccchhhhhhcccCCch-HHHHHHHHHHHHHHHHhhhhh--HHHHH-HHHHHHhhhcCcchhH-HHHHHhhhccccchhh
Q 041273 2 LTSVLWGMVADRCGRKP-VIIIGCITVVIFNTLFGLSVS--FWMAI-ATRFLLGALNGLLGPI-KAYACEILRDQHKTLG 76 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~-~l~~~~~~~~~~~~~~~~~~~--~~~l~-~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~ 76 (362)
+-+|+.|.++|+.|+|| .+-....+..++.....+.++ ++.+. +.-.+..++.....+. .+++.|..++++-++.
T Consensus 73 ~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~ri 152 (438)
T COG2270 73 LLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNMGRI 152 (438)
T ss_pred HHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccccCcc
Confidence 45789999999999765 555566666666666777665 54444 4455666665555666 9999999999888888
Q ss_pred HHHHHHhhhhhhhhhhhhh--hhhcCccccCCcccccccc-------cccccchhhHHHHHHHHHHHHH-HHhhcccccC
Q 041273 77 LSTLSTAWGTGLIIGPAVG--GFLAQPAEKYPKAFSKESM-------FGKFPYFLPCLCMSLFAFAVTI-ASCWIPETLH 146 (362)
Q Consensus 77 ~~~~~~~~~~g~~~g~~~~--~~l~~~~~~~~~~~gw~~~-------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~ 146 (362)
.+.-.....+|+.+--... ..+... ..++... - ...-++...++++-.++..+ ..+..|+.++
T Consensus 153 S~lg~~~gylgs~i~li~~~~~~~~~~------~~~~~~~l~~l~~~~-~~~~ri~~~l~A~W~li~~iPm~~~v~~~~~ 225 (438)
T COG2270 153 SGLGWALGYLGSVILLIFVVLGFALGQ------QTGITIILLGLPPAD-GEDVRITGLLAALWWLLFALPMILNVHDAEK 225 (438)
T ss_pred cccccccccccchHHHHHHHHHHhccc------ccceeEEeeccCccc-cccchhHHHHHHHHHHHHHhHHHhccccccc
Confidence 7777777777776655443 111111 1111111 1 12223333444444433222 2333444332
Q ss_pred CCCcCCccccccchhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccc
Q 041273 147 KHNEDGVSLDVSCDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGG 226 (362)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (362)
...+..+... +.. ++...+.+++.+++++...++..+++.-...+...+-..|....
T Consensus 226 ~~~~~~~~l~---~g~---------------k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~----- 282 (438)
T COG2270 226 ISSPPPTALR---NGF---------------KELKSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAAD----- 282 (438)
T ss_pred ccccchHHHH---HHH---------------HHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHH-----
Confidence 1101100000 000 01345678888888999888888887766666666666676655
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 041273 227 LSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLS 306 (362)
Q Consensus 227 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (362)
+|++..+...+.....+..++++ ++.|+++||+|.|+++..+.++..+..+...+... ....|.. ..+.+.+-
T Consensus 283 ~gls~~~lll~g~~~~vvA~lg~-ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~--~~~f~i~----gll~g~s~ 355 (438)
T COG2270 283 LGLSSTELLLIGIALSVVAALGA-IIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEG--ELDFWIL----GLLVGTSL 355 (438)
T ss_pred cCccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccc--cHHHHHH----HHHHHHhc
Confidence 89999999999888899999998 89999999999999888888776655443333332 1122222 22222233
Q ss_pred HHhhhHHHHHHhhhccccccCCCCCC------------------------ChhHHHHHHHHHHHHHHHhhcc
Q 041273 307 VSIMTGLFLLQNRAVSQKRQGAGFLP------------------------GNQMIFFILNLVEALGVILTFK 354 (362)
Q Consensus 307 ~~~~~~~~~~~~~~~p~~~~~~~~~~------------------------g~~~~f~~~~~~~~i~~~~~~~ 354 (362)
.......-++..+.+|.+|.+..+.- ..+..+....++..++.++.++
T Consensus 356 G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~ 427 (438)
T COG2270 356 GGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLR 427 (438)
T ss_pred chHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEe
Confidence 45567778999999998777654321 1355666667777777766654
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.3e-15 Score=137.67 Aligned_cols=294 Identities=13% Similarity=0.046 Sum_probs=170.1
Q ss_pred cchhhhhhcccC-----CchHHHHHHHHH-HHHHHHHhhhhhHHHHH-HHHHHHhhhcCcchhH-HHHHHhhhccccchh
Q 041273 4 SVLWGMVADRCG-----RKPVIIIGCITV-VIFNTLFGLSVSFWMAI-ATRFLLGALNGLLGPI-KAYACEILRDQHKTL 75 (362)
Q Consensus 4 ~~~~G~l~Dr~G-----rr~~l~~~~~~~-~~~~~~~~~~~~~~~l~-~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~ 75 (362)
.+++|+++||++ ||+.++++.++. .+.....+..++..... +..++.+++.+..-++ .++..|..+ |++..
T Consensus 77 K~l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~ 155 (468)
T TIGR00788 77 KPFAGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSA 155 (468)
T ss_pred HHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCc
Confidence 467999999998 777788877766 34444444445544444 4788889988887666 999999998 44444
Q ss_pred h---HHHHHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHhhcccccCCCCcCC
Q 041273 76 G---LSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLHKHNEDG 152 (362)
Q Consensus 76 ~---~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 152 (362)
. .+......++|..+|+.++|.+.+ ..+||..| .+.+.+.++..+...++||++.....+.
T Consensus 156 ~~~~~s~~~~~~~~G~~vg~~l~G~l~~-------~~~~~~~f---------~~~a~l~ll~~~~~~~~~E~~~~~~~~~ 219 (468)
T TIGR00788 156 GPSLVSWMWGASATGGLISSLLGGPLLD-------KTLTRILF---------LITAALLLLQLFVSNLSKERRAFVRPRI 219 (468)
T ss_pred CCCeeeHHHHHHHHHHHHHHHHHHHHHH-------hcCcchHH---------HHHHHHHHHHHHHHHhcccccccccccc
Confidence 3 333344456899999999999998 77887776 5656555555555677888642111110
Q ss_pred ccccc-cchhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCc
Q 041273 153 VSLDV-SCDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYST 231 (362)
Q Consensus 153 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~ 231 (362)
++.+. ....... + ..+..++...+.++.+++|.++...+..++......+. ..+.|+ ...+.+|+++
T Consensus 220 ~~~~~~~~~~~~~--~-----~~~~~~~~~~~l~~~l~~~~i~~~l~fifl~~~~~~~~--~~~~f~---~~~~~lG~s~ 287 (468)
T TIGR00788 220 GTYLEMNMALLTL--G-----VLANVKVQILGLRGAIQLLEIAKPLIFIFLSYANLPGA--SGSVFC---ATTQCLPGGP 287 (468)
T ss_pred cccchhhhhhhhh--h-----HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhcCCC--CceeEE---EEcccCCCCc
Confidence 00000 0000000 0 00000011223445577777776555444411111111 111111 1123489999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHHHHHHHH
Q 041273 232 ENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSG-----FSLALLINCASVMKNVLS 306 (362)
Q Consensus 232 ~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 306 (362)
.+.|......+++.+++. ...++..+|++.|+.+.++.++..++...........+ ...+ .......+.....
T Consensus 288 ~~~G~~~~~~~v~~i~g~-~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~-~~~~~~~l~~~~~ 365 (468)
T TIGR00788 288 SFSGMSKVVGNLGSLCGV-GGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEV-FVLGDSIIAEVLA 365 (468)
T ss_pred chhhhHHHHHHHHHHHHH-HHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCee-eeeehhHHHHHHH
Confidence 999999999999999887 88888889999999998888887776544321110000 0111 1112222222233
Q ss_pred HHhhhHHHHHHhhhccccccCC
Q 041273 307 VSIMTGLFLLQNRAVSQKRQGA 328 (362)
Q Consensus 307 ~~~~~~~~~~~~~~~p~~~~~~ 328 (362)
.........++.+..|++.++.
T Consensus 366 g~~~~~~~~~~~~~~p~~~egt 387 (468)
T TIGR00788 366 QLKFMPFLVLLARLCPSGCESS 387 (468)
T ss_pred HHHHccHHHHHHHhCCCCceeh
Confidence 3334445888888888655543
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.3e-14 Score=109.13 Aligned_cols=107 Identities=31% Similarity=0.510 Sum_probs=97.5
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTL 80 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~ 80 (362)
+++++.|++.||+|||+.+..+.....++.+.....++++.+.+.+++.|++.+...+. .+++.|..|+++|+++++..
T Consensus 13 ~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (141)
T TIGR00880 13 IYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLM 92 (141)
T ss_pred HHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHH
Confidence 46788999999999999999999999999998888899999999999999998887777 89999999999999999999
Q ss_pred HHhhhhhhhhhhhhhhhhcCccccCCccccccccc
Q 041273 81 STAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMF 115 (362)
Q Consensus 81 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~ 115 (362)
+....+|..++|.+.+.+.+ ..+|+..+
T Consensus 93 ~~~~~~g~~~~~~~~~~~~~-------~~~~~~~~ 120 (141)
T TIGR00880 93 SAGIALGPLLGPPLGGVLAQ-------FLGWRAPF 120 (141)
T ss_pred HHhHHHHHHHhHHhHHHHhc-------ccchHHHH
Confidence 99999999999999999987 66776655
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-13 Score=112.04 Aligned_cols=244 Identities=15% Similarity=0.167 Sum_probs=152.5
Q ss_pred cccchhhhhhcc-cCCchHHHHHHHHHHHHHHHHh---hhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhh
Q 041273 2 LTSVLWGMVADR-CGRKPVIIIGCITVVIFNTLFG---LSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLG 76 (362)
Q Consensus 2 i~~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~~~~~---~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~ 76 (362)
+-++++|++.|| +|-|..-++-+....++.++++ ..+.+|.+..+|++-|+|.-...++ ..|+.-|+..||.+.+
T Consensus 94 VlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~v 173 (459)
T KOG4686|consen 94 VLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFV 173 (459)
T ss_pred EEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccch
Confidence 346789999996 7888766666666667777765 4689999999999999987777777 9999999999999999
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHhhcccccCCCCcCCcccc
Q 041273 77 LSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLHKHNEDGVSLD 156 (362)
Q Consensus 77 ~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 156 (362)
+|+.....-+|+.+--.+.+++.+..+..-+..|- ...+ -|.......+...++..... -.-|++.++.-+.++..
T Consensus 174 fGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~gh-T~LG--~~l~~~~~tc~~slical~l-g~~D~rAerilh~e~g~ 249 (459)
T KOG4686|consen 174 FGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGH-TLLG--LWLCFEVKTCKQSLICALSL-GLSDDRAERILHLEEGF 249 (459)
T ss_pred hhHHHHHHHhhceeeeeecHHHHHHHHHhcccchH-HHHH--HHHHHHHHHHHHHHHHHHHh-hhhhhHHHHHHhhhcCc
Confidence 99999999999888777777776522110000000 0000 00000000001111111111 11111111110000000
Q ss_pred ccchhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHH
Q 041273 157 VSCDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQ 236 (362)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~ 236 (362)
..+.++.+...-+ .|++|...+.+.++....+-+...-|.+.++. +|+|+.+++.
T Consensus 250 -------------------~Ge~pkLtdv~~f-~ppfw~~~iicv~yyva~fPFi~lg~~fF~~r-----fGlS~~~a~~ 304 (459)
T KOG4686|consen 250 -------------------LGEEPKLTDVNTF-YPPFWVLVIICVLYYVAWFPFITLGPMFFQKR-----FGLSAVSAGN 304 (459)
T ss_pred -------------------ccCCccccccccc-CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-----hCCChhhccc
Confidence 0000111111112 47788888888888777777766666666554 8999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Q 041273 237 VLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIP 275 (362)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~ 275 (362)
+.+.......+.+ ++.+.++||.|++.....+..+..+
T Consensus 305 i~s~vy~Isav~s-pvfg~i~Dk~G~n~~wv~~a~~~tl 342 (459)
T KOG4686|consen 305 ILSTVYGISAVLS-PVFGAISDKYGFNLWWVASACILTL 342 (459)
T ss_pred hhhhhhhhhhhhh-hhHHHhHhhhcceehhHHHHHHHHH
Confidence 9888888888887 8999999999998776655554433
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.5e-12 Score=113.23 Aligned_cols=301 Identities=13% Similarity=0.115 Sum_probs=177.9
Q ss_pred ccchhhhhhcc-cCCchHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccc--cchhh
Q 041273 3 TSVLWGMVADR-CGRKPVIIIGCITVVIFNTLFGLSV--SFWMAIATRFLLGALNGLLGPI-KAYACEILRDQ--HKTLG 76 (362)
Q Consensus 3 ~~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~--~r~~~ 76 (362)
...++|+++|| +|+|+.+..+.++.++|.++.+.+. +...++++-.+.++|.|.+-+. .+++.|.+|++ +|-..
T Consensus 77 t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~g 156 (498)
T COG3104 77 TPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGG 156 (498)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCC
Confidence 45789999999 7999999999999999999999984 7888999999999999999777 99999999843 47788
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHhhcccccCC----CCcCC
Q 041273 77 LSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLHK----HNEDG 152 (362)
Q Consensus 77 ~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~----~~~~~ 152 (362)
++++..+.++|+.++|.+.+++.+ ..||+..| ..+++-....++.....+..... ++.+.
T Consensus 157 Ft~fY~~iNiGsl~~p~i~~~~~~-------~~g~~~gF---------~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~ 220 (498)
T COG3104 157 FTLFYMGINIGSLIAPIITGLLAI-------NYGWHVGF---------GLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNP 220 (498)
T ss_pred ccEEEEEeehHHHHHHHHHHHHHH-------hhCHHHHH---------HHHHHHHHHHHHHHHHccchhcCCCCCCCccc
Confidence 999999999999999999999998 67776666 44444444444444444432211 11111
Q ss_pred ccccccchh--------hhhh---cCCCCcccccc------------CcccchhhhcccccchhH---HHHHHHHHHHHH
Q 041273 153 VSLDVSCDA--------LESA---CGSNAEFKQDE------------GSEEATAKKSLMKNWPFI---SSTIVYCVFSLH 206 (362)
Q Consensus 153 ~~~~~~~~~--------~~~~---~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 206 (362)
.+.+..... .... ....++..... .+....+..+ -.+++.+ .+++...++...
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~er~r~~~~~~Lfl~~~iFW~~ 299 (498)
T COG3104 221 LSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVF-DERRRLLAAIPLFLFAVIFWAL 299 (498)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 111100000 0000 00000000000 0000000000 0011222 222333333333
Q ss_pred HhHHHHHHHhHhcccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchh-------HHHHHHHHHHHHHHHH
Q 041273 207 DIAYTEIFSLWAISPWKYGGLSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPI-------IITRIAGVLSIPLLTS 279 (362)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~-------~~~~~~~~~~~~~~~~ 279 (362)
.....+.+..|..+....+.+|++ -..+...+...+..++.+ ++..++..+.+++ .-+..+..++..+.++
T Consensus 300 ~~Q~~ssl~~~a~~~v~~~~~g~~-vp~~~fQslNp~~Iii~~-pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~ 377 (498)
T COG3104 300 YEQMGSSLNLYADRNVNRQIFGFE-VPPAWFQSLNPFFIILFS-PILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLI 377 (498)
T ss_pred HHhccchHHHHHHHhhccccccee-cCHHHHHhhCHHHHHHHH-HHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHH
Confidence 333333445555443322223322 223566778888877777 6666666663322 2345666666666655
Q ss_pred HHHHHhh----hhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcc
Q 041273 280 YTYIAML----SGFSLALLINCASVMKNVLSVSIMTGLFLLQNRAVS 322 (362)
Q Consensus 280 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 322 (362)
+...... ++............+.+++.....|.-.+++.+..|
T Consensus 378 l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP 424 (498)
T COG3104 378 LLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAP 424 (498)
T ss_pred HHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhCh
Confidence 5544111 222334445566777778899999999999999999
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.7e-12 Score=114.13 Aligned_cols=145 Identities=19% Similarity=0.312 Sum_probs=114.0
Q ss_pred CcccchhhhhhcccCC-chHHHHHHHHHHHHHHHH-hhh---h-hHHHHHHHHHHHhhhcCcchhHHHHHHhhhccccch
Q 041273 1 ALTSVLWGMVADRCGR-KPVIIIGCITVVIFNTLF-GLS---V-SFWMAIATRFLLGALNGLLGPIKAYACEILRDQHKT 74 (362)
Q Consensus 1 ~i~~~~~G~l~Dr~Gr-r~~l~~~~~~~~~~~~~~-~~~---~-~~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~r~ 74 (362)
++++|..|+++.|.++ |+.++.+.++..+++++. .+. + ..+.++++|++.|+|.+......+|+++....++|.
T Consensus 85 ~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~ 164 (488)
T KOG2325|consen 85 AIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRP 164 (488)
T ss_pred HhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchH
Confidence 3678999999999997 889999999999999988 332 3 578899999999999999888899999999999999
Q ss_pred hhHHHHHHhhhhhhhhhhhhhhhhcCccccCCcccccccc--cccccchhhHHHHHHHHHH-HHHHHhhcccccCCCCc
Q 041273 75 LGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESM--FGKFPYFLPCLCMSLFAFA-VTIASCWIPETLHKHNE 150 (362)
Q Consensus 75 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~ 150 (362)
|+++....+..+|.++||.++..+....+ -|++.. ..-..|..+.++.++..++ .++....++|.++...+
T Consensus 165 rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~-----~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~ 238 (488)
T KOG2325|consen 165 RAFAATSGGFVLGIILGPTIQLAFTPLGE-----KGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIID 238 (488)
T ss_pred HHHHHhhhHHHHHHHHhHHHHHHHhhhcC-----CceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccc
Confidence 99999999999999999999988875432 122111 1012366777888888877 44555677887665433
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.5e-12 Score=120.34 Aligned_cols=267 Identities=16% Similarity=0.143 Sum_probs=193.6
Q ss_pred ccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhh--------------------------------------------
Q 041273 3 TSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSV-------------------------------------------- 38 (362)
Q Consensus 3 ~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~-------------------------------------------- 38 (362)
...+..+..-|..|-+.+-+|.++++++++++++-+
T Consensus 148 ~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 227 (735)
T KOG3626|consen 148 LIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSK 227 (735)
T ss_pred hhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCccc
Confidence 345677888888888999999999999999988610
Q ss_pred ------h-HH-HHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHHHHhhhhhhhhhhhhhhhhcCccccC-Ccc
Q 041273 39 ------S-FW-MAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKY-PKA 108 (362)
Q Consensus 39 ------~-~~-~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~-~~~ 108 (362)
+ ++ .++++.++.|+|.....+. .+|+=|...+++-+..+|+......+|.++|-++++++.+...+. ...
T Consensus 228 ~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~ 307 (735)
T KOG3626|consen 228 REKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSP 307 (735)
T ss_pred ccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCC
Confidence 0 23 4567789999999998888 999999999999999999999999999999999999988744332 111
Q ss_pred -----cccccccccccchhhHHHHHHHHHHHHHHHhhcccccCCCCcCCccccccchhhhhhcCCCCcccc--ccCcccc
Q 041273 109 -----FSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLHKHNEDGVSLDVSCDALESACGSNAEFKQ--DEGSEEA 181 (362)
Q Consensus 109 -----~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 181 (362)
.+-|| .-.||+-+++++.+.++..+.++++|++.++..++.+..+ .+..+...+..++... ++-++.+
T Consensus 308 ~~it~~DPrW---IGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~~~~~~~~--~~~~k~~~~~~~~~~~~~~~ikdfp 382 (735)
T KOG3626|consen 308 IGITPTDPRW---IGAWWLGFLICGALLLFSAVPLFFFPKELPKSQKRKRARD--LHVLKTESGGAKSDKTFGKKIKDFP 382 (735)
T ss_pred CCCCCCCcch---hhHHHHHHHHHHHHHHHHHHHHHhCcccCccccccchhhh--hcccccccccccCCcchhhhHHHHH
Confidence 11122 3356777788888888888888888887665432211111 0000000000000001 1113345
Q ss_pred hhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 041273 182 TAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIG 261 (362)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g 261 (362)
...+++++||.+...++...+-.....++.+++|-|+++. +|.+++.+..+.+..++......++++|++.+|+.
T Consensus 383 ~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Q-----fg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfk 457 (735)
T KOG3626|consen 383 KSIKRLLSNPIFMLVVLASVIESLAITGYITFLPKYLETQ-----FGISASLANILTGSIGVPAAAVGIFLGGLIIKKFK 457 (735)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHH-----cCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeec
Confidence 6778899999999999999999999999999999999887 89999999999988888888777899999999875
Q ss_pred --hhHHHHHHHHHHHHHHHH
Q 041273 262 --PIIITRIAGVLSIPLLTS 279 (362)
Q Consensus 262 --~~~~~~~~~~~~~~~~~~ 279 (362)
.|....+..+...+.++.
T Consensus 458 l~~r~~a~~~~~~~~l~l~~ 477 (735)
T KOG3626|consen 458 LSARGAAKFVIVCSVLSLLF 477 (735)
T ss_pred ccHHHHHHHHHHHHHHHHHH
Confidence 455555555544444333
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.45 E-value=9.4e-15 Score=134.46 Aligned_cols=270 Identities=17% Similarity=0.177 Sum_probs=2.9
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhh-------------------------------------------
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSV------------------------------------------- 38 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~------------------------------------------- 38 (362)
+..++..++.+|-.|-|.+-++.++.+++++++++-+
T Consensus 53 ~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~ 132 (539)
T PF03137_consen 53 VVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSS 132 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccccccccccccccccccCcccccccc
Confidence 3456778888887788899999999999999887510
Q ss_pred -------hHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHHHHhhhhhhhhhhhhhhhhcCccccCCc---
Q 041273 39 -------SFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPK--- 107 (362)
Q Consensus 39 -------~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~--- 107 (362)
-+..++++.++.|+|.....+. .+|+=|.+++++-+..+|+......+|.++|-++++...+...+.+.
T Consensus 133 ~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~ 212 (539)
T PF03137_consen 133 SSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPP 212 (539)
T ss_dssp -------------------SSS----------------------------------------------------------
T ss_pred ccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccc
Confidence 1355778899999999998888 99999999999999999999999999999999999988764322110
Q ss_pred ----ccccccccccccchhhHHHHHHHHHHHHHHHhhcccccCCCCcCCccccccchhhhhhcC---CCCcc---ccccC
Q 041273 108 ----AFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLHKHNEDGVSLDVSCDALESACG---SNAEF---KQDEG 177 (362)
Q Consensus 108 ----~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~~ 177 (362)
......-| -..||+-+++.+.+.++..+.....|++.+...+.+++.+...+..++... .+++. .....
T Consensus 213 ~~~~i~p~dp~W-vGAWWLGfli~g~~~~l~aipl~~FPk~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (539)
T PF03137_consen 213 DGVGITPSDPRW-VGAWWLGFLICGILLFLSAIPLFFFPKKLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSI 291 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCCCCCCccH-HHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccccchhhhhhcchhhhhhhcccccccccchhhhh
Confidence 00111111 334566666777776666666666666544431111111100000000000 00000 01112
Q ss_pred cccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 041273 178 SEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLAISGFSLLVFQLTLYPYVE 257 (362)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~ 257 (362)
++.+...+++++||.+....+..........++.++.|-|++.. ++.++++++.+.....+.+.....+++|.+.
T Consensus 292 ~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~Q-----F~~sas~A~~l~G~v~ip~~~~G~llGG~iv 366 (539)
T PF03137_consen 292 KDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKYLESQ-----FGLSASQASLLTGIVSIPGAALGILLGGYIV 366 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCHHHHHHHHhhhhcchhheehheEEEEE
Confidence 33456778899999999999998888888889999999999886 8999999998888877766666668999999
Q ss_pred Hhhc--hhHHHHHHHHHHHHHH
Q 041273 258 RMIG--PIIITRIAGVLSIPLL 277 (362)
Q Consensus 258 ~~~g--~~~~~~~~~~~~~~~~ 277 (362)
+|++ .|+......+...+..
T Consensus 367 kk~kl~~~~~~~~~~v~~~v~~ 388 (539)
T PF03137_consen 367 KKFKLSARGAAKFCIVVSIVSV 388 (539)
T ss_dssp ----------------------
T ss_pred EEecCcHHHHHHHHHHHHHHHH
Confidence 9875 4555555554444443
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.7e-13 Score=127.85 Aligned_cols=128 Identities=15% Similarity=0.130 Sum_probs=106.2
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTL 80 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~ 80 (362)
++.++.|+++||+|||++++++.++.+++.++.++.++...+++.+++.|++.+...+. .++++|++|.++|++++|+.
T Consensus 610 ~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~ 689 (742)
T TIGR01299 610 PGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFL 689 (742)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 46789999999999999999999999999999999988888888888888876666666 99999999999999999999
Q ss_pred HHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHhhcccccC
Q 041273 81 STAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLH 146 (362)
Q Consensus 81 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 146 (362)
+....+|.++||.+++.+.+ . ....++++.+++.++..++..++||+..
T Consensus 690 ~~~~rlGaiigp~i~g~L~~-------~----------~~~~pf~i~a~~lll~~ll~~~LPET~~ 738 (742)
T TIGR01299 690 NALCKAAAVLGILIFGSFVG-------I----------TKAAPILFASAALACGGLLALKLPDTRG 738 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------h----------hhHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 99999999999999998875 1 1233445555665665666667788654
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.3e-11 Score=104.58 Aligned_cols=283 Identities=11% Similarity=0.029 Sum_probs=173.3
Q ss_pred cchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhh------hHH--HHHHHHHHHhhhcCcchhH-HHHHHhhhccccch
Q 041273 4 SVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSV------SFW--MAIATRFLLGALNGLLGPI-KAYACEILRDQHKT 74 (362)
Q Consensus 4 ~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~------~~~--~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~ 74 (362)
.+++-|+.||+|-|...+++..+.+++..+-..+. .++ ....+..+.+...-..... ..+..-|++++||.
T Consensus 96 gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra 175 (480)
T KOG2563|consen 96 GFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRA 175 (480)
T ss_pred hhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhh
Confidence 45677999999999999999999999999876653 344 5556677777666555555 56677789999999
Q ss_pred hhHHHHHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHH-HHHHHhhcccccCCCCcCCc
Q 041273 75 LGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFA-VTIASCWIPETLHKHNEDGV 153 (362)
Q Consensus 75 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~ 153 (362)
.|...-..+..+|..+|-++...+..... ..+...|.. ...++....++.+ ..+..+..+|.|+.++...+
T Consensus 176 ~A~~~~v~~n~LGvavg~llppilV~~~~-~~~~~~~~~-------~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~ 247 (480)
T KOG2563|consen 176 IATVLGVMGNPLGVAVGFLLPPILVPSSK-DSEDNSWLF-------FTLFLGVECLAALLLALVLFVFTKKPPTPPSASQ 247 (480)
T ss_pred hhhhHHHhcchHHHHHHhhccceecCCCC-CcchhHHHH-------HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhH
Confidence 99999999999999999988888876321 111233321 1112323333332 22333334443333222211
Q ss_pred cccccchhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchh
Q 041273 154 SLDVSCDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTEN 233 (362)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~ 233 (362)
... ++.+..++.++.++|+++....+.+......+.+..+.+-.-+.. -|++...
T Consensus 248 ~~~-------------------~~~~f~~si~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~------sgY~~~~ 302 (480)
T KOG2563|consen 248 AAL-------------------QDASFPKSIKSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCP------SGYEGVF 302 (480)
T ss_pred hhh-------------------hcCcHHHHHHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhcccc------ccCCccc
Confidence 111 001145678899999999998888877665555554443322211 3666677
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhchhHH-HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhH
Q 041273 234 AGQVLAISGFSLLVFQLTLYPYVERMIGPIII-TRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMTG 312 (362)
Q Consensus 234 ~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (362)
+|......-+.+++++ .+++.+.||.+.-+. ..+......++...+....... ...++.+......+.++.+.+|.
T Consensus 303 aG~ig~l~iv~Gmlga-~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~--~~~viv~~t~~~~g~~~~~~~Pi 379 (480)
T KOG2563|consen 303 AGYIGALMIVAGMLGA-LASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFL--GDSVIVFTTCGLLGFFGTGYLPI 379 (480)
T ss_pred cchhHHHHHHHHHHHH-HHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccC--CceEehhhhHHHHHHhhcCCCCc
Confidence 8888888888888888 888999998775554 3333333333322222222112 22233444444555566777777
Q ss_pred HHHHHhh-hcc
Q 041273 313 LFLLQNR-AVS 322 (362)
Q Consensus 313 ~~~~~~~-~~p 322 (362)
-..+-.| .+|
T Consensus 380 g~ElgvE~TyP 390 (480)
T KOG2563|consen 380 GFELGVETTYP 390 (480)
T ss_pred ceeeeeeeccc
Confidence 6666555 345
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.5e-12 Score=117.85 Aligned_cols=136 Identities=10% Similarity=0.163 Sum_probs=103.8
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhh
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSV----SFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLG 76 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~----~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~ 76 (362)
++.++.|+++||+|||+++..+.+..+++..+..... +++.+++.+++.|++.+...+. ..++.|.+|+++|+++
T Consensus 266 ~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~ 345 (418)
T TIGR00889 266 FFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASA 345 (418)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 3567899999999999999999999988877666532 3466778899999998877777 8999999999999999
Q ss_pred HHHHH-HhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHH-HHHHHhhcccccCC
Q 041273 77 LSTLS-TAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFA-VTIASCWIPETLHK 147 (362)
Q Consensus 77 ~~~~~-~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~ 147 (362)
+++.+ ...++|..+||.++|++.+..++ .+.+||+..| .+.+++.++ .++..+++||+.+.
T Consensus 346 ~g~~~~~~~~lg~~iGp~l~G~l~~~~g~-~~~~~~~~~f---------~~~~~~~~i~~~l~~~~~~~~~~~ 408 (418)
T TIGR00889 346 QGLFTLMCNGFGSLLGYILSGVMVEKMFA-YGTFDWQTMW---------LFFAGYIAILAVLFMIFFKYSHNA 408 (418)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhcc-ccCCchHHHH---------HHHHHHHHHHHHHHHHHhCCcccC
Confidence 99997 67889999999999999872210 0114677666 455555444 45555667776443
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.1e-12 Score=118.41 Aligned_cols=133 Identities=14% Similarity=0.227 Sum_probs=92.9
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHH---HhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTL---FGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGL 77 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~---~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~ 77 (362)
++++..|+++||+|||+.+..+.+...++... ...+++...+++.+++.|++.+..... ..++.|.+|++.|++++
T Consensus 301 ~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~ 380 (490)
T PRK10642 301 FVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSAL 380 (490)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHH
Confidence 45678999999999999988877654433322 223456777888899988876655444 78888999999999999
Q ss_pred HHHHHhhhhhhhhhhhhhhhhcCccccCCccc-ccccccccccchhhHHHHHHHHHHHHHHHhhcccccCCCCc
Q 041273 78 STLSTAWGTGLIIGPAVGGFLAQPAEKYPKAF-SKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLHKHNE 150 (362)
Q Consensus 78 ~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~-gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 150 (362)
+.......++..++|.+.+++.+ .. +|+ .+.....+.+++.++..+++||++++..+
T Consensus 381 g~~~~~~~~~g~~~p~i~g~l~~-------~~~~~~---------~~~~~~~~~~~i~~~~~~~~pes~~~~~~ 438 (490)
T PRK10642 381 AAAFNISVLVAGLTPTLAAWLVE-------STQNLM---------MPAYYLMVVAVIGLITGVTMKETANRPLK 438 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HhCCch---------HHHHHHHHHHHHHHHHHHHhccccCCCCC
Confidence 97544455666788999888876 22 232 22244455555556666778999887543
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.2e-10 Score=99.11 Aligned_cols=229 Identities=15% Similarity=0.129 Sum_probs=130.2
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-H-HHHHhhhccc----cchh
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-K-AYACEILRDQ----HKTL 75 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~-~~i~~~~~~~----~r~~ 75 (362)
+..++.|.++||+|||+.-+.-+++.+++++ +-..++++.++++|++.|++.+....+ . =++.|.-..+ ..+.
T Consensus 84 i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~ 162 (354)
T PF05631_consen 84 IFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSD 162 (354)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 4567899999999999999999999999885 566688999999999999999887665 4 4566664322 2222
Q ss_pred hHHHHH-HhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHH-HHHhhcccccCCCCcCCc
Q 041273 76 GLSTLS-TAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVT-IASCWIPETLHKHNEDGV 153 (362)
Q Consensus 76 ~~~~~~-~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~ 153 (362)
.++... ..+++-.+.+..++-++.+ ..+. +...|+.....+.++.. +....-+|+..+..++++
T Consensus 163 tF~~~tf~~n~~vAI~aGv~a~~l~~-------~~~~-------g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~~~~~~~ 228 (354)
T PF05631_consen 163 TFSLATFFGNGVVAIGAGVVANVLAD-------WFGF-------GPVAPFDAAIVLLAVAAVLILKTWPENYGDTSSSSS 228 (354)
T ss_pred HHHHHHHHHhHHHHHHHhHHHHHHHH-------HhCC-------CCcchHHHHHHHHHHHHHHHHhcccccCCCcccccc
Confidence 222222 1222223333444444443 1221 11233344444444433 333344565443222111
Q ss_pred cccccchhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchh
Q 041273 154 SLDVSCDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTEN 233 (362)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~ 233 (362)
..+ +..+..+.+.+||+++.+.++..++-...+.+. ..| ++.... .+ ...-
T Consensus 229 ~~~----------------------~~~~a~~~i~~d~ril~LG~~qslFE~smy~FV---flW--tPaL~~-~~-~~~P 279 (354)
T PF05631_consen 229 LSG----------------------SFREAWRAILSDPRILLLGLIQSLFEGSMYLFV---FLW--TPALDP-DD-EELP 279 (354)
T ss_pred hHH----------------------HHHHHHHHHHcCchhHHHHHHHHHHHHHHHHhe---eee--eceecC-CC-CCCC
Confidence 111 123345667788999888888777655544332 222 222121 11 2234
Q ss_pred hHHHHHHHHHHHHHHHHHHHH-HHHHhhchhHHHHHHHHHHHH
Q 041273 234 AGQVLAISGFSLLVFQLTLYP-YVERMIGPIIITRIAGVLSIP 275 (362)
Q Consensus 234 ~g~~~~~~~~~~~~~~~~~~~-~l~~~~g~~~~~~~~~~~~~~ 275 (362)
.|++++...+..++++ -+.+ .+.++....+.+.....+..+
T Consensus 280 ~GlIFssFM~a~MlGS-~lf~~l~s~~~~~e~~l~~v~~~aa~ 321 (354)
T PF05631_consen 280 LGLIFSSFMVAMMLGS-SLFSRLLSKSLRPESLLRYVFAVAAV 321 (354)
T ss_pred chHHHHHHHHHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 7899999999999998 5554 444554444444444444333
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.4e-12 Score=114.43 Aligned_cols=129 Identities=23% Similarity=0.235 Sum_probs=106.2
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTL 80 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~ 80 (362)
++.++.|++.||+|||+.+..+..+.+++..+..+.++.+.+++.+++.|++.+...+. ...+.|..|+++|+++++.+
T Consensus 264 ~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 343 (399)
T PRK05122 264 GARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAY 343 (399)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 45688999999999999999998888888888888888888888999999998877776 77888999999999999999
Q ss_pred HHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHhhcccccC
Q 041273 81 STAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLH 146 (362)
Q Consensus 81 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 146 (362)
+....+|..++|.+.+.+.+ ..||+..+ .+.+.+.++.++....++++++
T Consensus 344 ~~~~~~g~~~~~~~~g~l~~-------~~g~~~~~---------~~~~~~~~~~~~~~~~~~~~~~ 393 (399)
T PRK05122 344 SVFLDLSLGITGPLAGLVAS-------WFGYPSIF---------LAAALAALLGLALTWLLYRRAP 393 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HcCHHHHH---------HHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999987 66776655 5555555555555555555433
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.5e-09 Score=91.55 Aligned_cols=301 Identities=16% Similarity=0.103 Sum_probs=175.4
Q ss_pred cchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhHHHHHHhhhccccchhhHHHHHHh
Q 041273 4 SVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPIKAYACEILRDQHKTLGLSTLSTA 83 (362)
Q Consensus 4 ~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 83 (362)
-++...+.|..+.|++++.+.+...+...+..+.++...+-+..+..|++.+.-..-.+++-...|+++-.++.+...+.
T Consensus 58 l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~evay~sYiys~v~~~~yq~vts~~raa 137 (412)
T PF01770_consen 58 LLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAAEVAYYSYIYSVVDKEHYQKVTSYTRAA 137 (412)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHheeecCHHHHHHHHHHHHHH
Confidence 35778899999999999999999999999999999999999999999999887544499999999999999999999999
Q ss_pred hhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHhhcccccCCCCcCCccc--cc----
Q 041273 84 WGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLHKHNEDGVSL--DV---- 157 (362)
Q Consensus 84 ~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~--~~---- 157 (362)
.-+|..++.++|..+.. ++ ...+.....+......+.++..+++|..++..--+++.. +.
T Consensus 138 ~l~g~~~s~~lgQllvs--------~~------~~sy~~L~~isl~~~~~a~~~~~fLP~~~~S~~f~r~~~~~~~~~~~ 203 (412)
T PF01770_consen 138 TLVGRFISSLLGQLLVS--------FG------GVSYFQLNYISLASVSLALLIALFLPMPKRSLFFHRKPPAEQDANES 203 (412)
T ss_pred HHHHHHHHHHHHHHHHH--------hc------CCCHHHHHHHHHHHHHHHHHHHHHcCCCCcccceeccCccccccccc
Confidence 99999999999998875 22 223344445555444456666677887654321111110 00
Q ss_pred cchhhhhhcCCC-Cccccc--cCcc-------cchhhhcccccchhHHHHHHHHHHHHHHhHHHHHH-HhHhcccccccc
Q 041273 158 SCDALESACGSN-AEFKQD--EGSE-------EATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIF-SLWAISPWKYGG 226 (362)
Q Consensus 158 ~~~~~~~~~~~~-~~~~~~--~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 226 (362)
..+..++..+.+ ++.+++ .+.. ...+.++..++|+++.-.+...+.........++. .+|-..+ .
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atcgy~qv~nYvQ~LW~~v~----~ 279 (412)
T PF01770_consen 204 ESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATCGYYQVINYVQSLWDTVP----P 279 (412)
T ss_pred cccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhHHHHHHHHHHHHHHhcC----C
Confidence 000000000000 000000 0111 12345566778887776665555443333333222 2222220 1
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH--HHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 041273 227 LSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSI--PLLTSYTYIAMLSGFSLALLINCASVMKNV 304 (362)
Q Consensus 227 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (362)
-+-...-.|.+-++..+.+.+.+ +..+++..+..+...+.++..... ..++++.+.. ..|. .++...+...
T Consensus 280 ~~~~~vYNG~VeA~~tllgA~~a-l~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~-----~Iwv-~Y~~yIif~~ 352 (412)
T PF01770_consen 280 SDNESVYNGAVEAASTLLGAIAA-LLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTG-----NIWV-CYAGYIIFRS 352 (412)
T ss_pred CCCCcccchHHHHHHHHHHHHHH-HHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhh-----HHHH-HHHHHHHHHH
Confidence 12334456777777777777776 777887666665554444433332 2233333333 2232 2233333222
Q ss_pred HHHHhhhHHHHHHhhhccccccCCC
Q 041273 305 LSVSIMTGLFLLQNRAVSQKRQGAG 329 (362)
Q Consensus 305 ~~~~~~~~~~~~~~~~~p~~~~~~~ 329 (362)
......+....-++....++|-+-.
T Consensus 353 ~y~fliTiA~~qIA~~l~~e~yaLV 377 (412)
T PF01770_consen 353 LYMFLITIASFQIAKNLSEERYALV 377 (412)
T ss_pred HHHHHHHHHHHHHHHhccccceeee
Confidence 2333334444445555555554433
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.7e-11 Score=110.93 Aligned_cols=118 Identities=20% Similarity=0.254 Sum_probs=100.5
Q ss_pred ccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHHH
Q 041273 3 TSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTLS 81 (362)
Q Consensus 3 ~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~~ 81 (362)
+.+..|+++||+|||+.+..+.....++.+...+.++.+.+++.+++.|++.+...|. .+.+.|..|+++|++.++..+
T Consensus 274 ~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 353 (408)
T PRK09874 274 SAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQ 353 (408)
T ss_pred HHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHH
Confidence 4567899999999999999998888888877777888888889999999998888787 888899999999999999999
Q ss_pred HhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHH
Q 041273 82 TAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTI 136 (362)
Q Consensus 82 ~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (362)
....+|..+||.+++.+.+ ..||+..| ...+++.++..+
T Consensus 354 ~~~~~g~~~gp~~~G~l~~-------~~g~~~~f---------~~~~~~~l~~~~ 392 (408)
T PRK09874 354 SFRDIGNVTGPLMGAAISA-------NYGFRAVF---------LVTAGVVLFNAV 392 (408)
T ss_pred HHHHHHHHhhHHHHHHHHh-------hcchhHHH---------HHHHHHHHHHHH
Confidence 9999999999999999988 67777666 555555555333
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-11 Score=112.27 Aligned_cols=127 Identities=11% Similarity=0.048 Sum_probs=102.8
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHH-
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLST- 79 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~- 79 (362)
+++++.|+++||+|||+.+..+.++.+++..+..++++.+.+++.+++.|++.+...+. ..++.|.+|++.|+...+.
T Consensus 277 ~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 356 (420)
T PRK09528 277 LIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVG 356 (420)
T ss_pred HHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeeh
Confidence 46789999999999999999999999998888889999999999999999987776555 8899999999999887665
Q ss_pred HHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHH-HHHHhhcccc
Q 041273 80 LSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAV-TIASCWIPET 144 (362)
Q Consensus 80 ~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~ 144 (362)
++....+|..++|.+.|++.+ ..||+..| ...+++.++. .+....++++
T Consensus 357 ~~~~~~lg~~ig~~~~G~l~~-------~~G~~~~f---------~~~~~~~~i~~~~~~~~~~~~ 406 (420)
T PRK09528 357 FQFAKQLGAVFLSTLAGNLYD-------SIGFQGTY---------LILGGIVLLFTLISVFTLSGD 406 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------hhCchHHH---------HHHHHHHHHHHHHHHHHhcCC
Confidence 677788999999999999998 77887776 5545554443 3333444443
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.3e-11 Score=108.52 Aligned_cols=120 Identities=25% Similarity=0.301 Sum_probs=102.4
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTL 80 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~ 80 (362)
+++++.|++.||+|||+.+..+..+.+++.++..+.++.+.+.+..++.|++.+...+. .+.+.|.+|+|+|++++++.
T Consensus 264 ~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 343 (392)
T PRK12382 264 LMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGY 343 (392)
T ss_pred HHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 45788999999999999999999998888888888888888888999999988877776 88889999999999999999
Q ss_pred HHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHH
Q 041273 81 STAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIA 137 (362)
Q Consensus 81 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (362)
+....+|..+||.+.+++.+ ..||+..| ...+.+.++....
T Consensus 344 ~~~~~~g~~ig~~~~g~l~~-------~~g~~~~~---------~~~~~~~~~~~~~ 384 (392)
T PRK12382 344 AAFQDIAYGVSGPLAGMLAT-------SFGYPSVF---------LAGAISAVLGIIV 384 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HhCchHHH---------HHHHHHHHHHHHH
Confidence 99999999999999999998 77787766 5555555544333
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.7e-11 Score=106.91 Aligned_cols=124 Identities=18% Similarity=0.275 Sum_probs=98.1
Q ss_pred ccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHHH
Q 041273 3 TSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTLS 81 (362)
Q Consensus 3 ~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~~ 81 (362)
+.++.|+++||+|||+.+..+.....+........++.+.+++.+++.+++.+...+. ..+..|..|+ +|+++++..+
T Consensus 268 ~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~ 346 (393)
T PRK15011 268 TMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-QAGSATTLYT 346 (393)
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHH
Confidence 5678999999999999888777666655555556778888888899888877665555 7788898875 5899999999
Q ss_pred HhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHhhccc
Q 041273 82 TAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPE 143 (362)
Q Consensus 82 ~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 143 (362)
...++|..+||.+++.+.+ .+||+..+ .+..++.++.++..++.||
T Consensus 347 ~~~~lg~~~g~~l~G~i~~-------~~g~~~~~---------~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 347 NTSRVGWIIAGSLAGIVAE-------IWNYHAVF---------WFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HhhhHHHH---------HHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999988 66776665 5666666666666667665
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-10 Score=103.25 Aligned_cols=121 Identities=23% Similarity=0.348 Sum_probs=105.7
Q ss_pred cccchhhhhhcccCCch-HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHH
Q 041273 2 LTSVLWGMVADRCGRKP-VIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLST 79 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~-~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~ 79 (362)
++.++.|++.||+|||+ .+..+..+..++.+.....++.+.+.+..++.|++.+...+. .+++.|..|+|+|++.++.
T Consensus 226 i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (352)
T cd06174 226 LGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGL 305 (352)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHH
Confidence 46788999999999999 999999999999999999999999999999999999888777 9999999999999999999
Q ss_pred HHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHH
Q 041273 80 LSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIAS 138 (362)
Q Consensus 80 ~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (362)
.+...++|..++|.+.+.+.+ ..+|+..+ .+.+++.++..+..
T Consensus 306 ~~~~~~~~~~i~~~i~g~l~~-------~~~~~~~~---------~~~~~~~~i~~i~~ 348 (352)
T cd06174 306 FNTFGSLGGALGPLLAGLLLD-------TGGYGGVF---------LILAALALLAALLL 348 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-------ccCcchHH---------HHHHHHHHHHHHHh
Confidence 999999999999999999998 66776665 55555555544433
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.8e-10 Score=102.94 Aligned_cols=124 Identities=19% Similarity=0.352 Sum_probs=98.2
Q ss_pred ccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHHH
Q 041273 3 TSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTLS 81 (362)
Q Consensus 3 ~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~~ 81 (362)
+.++.|++.||+|||+.+..+.+...+......+.++.+.+.+.+++.|++.+...+. ..++.|..|+ +|++++++.+
T Consensus 251 ~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~ 329 (375)
T TIGR00899 251 FMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-RAGAATTLYT 329 (375)
T ss_pred HHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-hhhHHHHHHH
Confidence 4567899999999999998887776666666667778888888899999988776676 8888898875 5679999999
Q ss_pred HhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHhhccc
Q 041273 82 TAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPE 143 (362)
Q Consensus 82 ~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 143 (362)
...++|..++|.+++.+.+ ..||+..+ ...++..++..+...+++|
T Consensus 330 ~~~~~g~~~g~~~~g~~~~-------~~g~~~~~---------~~~~~~~~~~~~~~~~~~~ 375 (375)
T TIGR00899 330 NTGRVGWIIAGSVGGILAE-------RWSYHAVY---------WFAIVMLIVALFCLLLIKD 375 (375)
T ss_pred HHHHHHHHHHHHHHHHHHH-------hccchhHH---------HHHHHHHHHHHHHHheecC
Confidence 9999999999999999988 66776665 5555665555555555543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.1e-09 Score=99.21 Aligned_cols=241 Identities=18% Similarity=0.200 Sum_probs=138.7
Q ss_pred cchhhhhhccc-----CCchHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHHhhhcCcchhH-HHHHHhhhc--cc
Q 041273 4 SVLWGMVADRC-----GRKPVIIIGCITVVIFNTLFGLSV----SFWMAIATRFLLGALNGLLGPI-KAYACEILR--DQ 71 (362)
Q Consensus 4 ~~~~G~l~Dr~-----Grr~~l~~~~~~~~~~~~~~~~~~----~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~--~~ 71 (362)
-++.|.++|.+ .||+.++++.++..++....+..+ +.....+.-++..++.+..-.. .+.+.|... ++
T Consensus 41 Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~ 120 (433)
T PF03092_consen 41 KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASFGYAFADVAADALVVELARREPE 120 (433)
T ss_pred hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCc
Confidence 47899999975 356667777777766666555433 4566666667777787776555 889999885 44
Q ss_pred cchhhHHHHHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHhhcccccCCCCcC
Q 041273 72 HKTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLHKHNED 151 (362)
Q Consensus 72 ~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 151 (362)
+|+...+.......+|.+++..++|.+.+ ..+.|..| .+.+.+..+..+....++|+....+..
T Consensus 121 ~~g~lqS~~~~~~~~G~lv~~~l~G~l~~-------~~~~~~~f---------~i~~~~~~l~~~~~~~~~~e~~~~~~~ 184 (433)
T PF03092_consen 121 SRGDLQSFVWGVRSVGSLVGSLLSGPLLD-------SFGPQGVF---------LISAALPLLMLIVALFLLEERKVRPAD 184 (433)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhh-------cCCCeEEe---------hHHHHHHHHHHHHHHHhhhhccccccc
Confidence 57888889999999999999999999988 66666666 555555555443444443322211111
Q ss_pred Ccc-cccc-chhhhhhcCCCCccccccCcccchhhhcccccchhHHHHH-HHHHHHHHHhHHHHHHHhHhcccccccccC
Q 041273 152 GVS-LDVS-CDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTI-VYCVFSLHDIAYTEIFSLWAISPWKYGGLS 228 (362)
Q Consensus 152 ~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 228 (362)
+.. .++. .+.. ....++.....++.++++.++...+ ..++......... -...|..++. .++.|
T Consensus 185 ~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~-a~~fy~~~~~-~~gp~ 251 (433)
T PF03092_consen 185 EVFSFGKEEVPCL-----------FGSFREQLSELWRALQQRAIWQPILFFIFFFNLPPSISS-ASSFYFQTDA-LGGPH 251 (433)
T ss_pred hhhcccccccchh-----------hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCC-ccEEEEEecc-ccccc
Confidence 100 0000 0000 0000112344556677777776655 2222211111110 0011122111 11345
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Q 041273 229 YSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSI 274 (362)
Q Consensus 229 ~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~ 274 (362)
+|+...|.+..+..++.+++. .+..+.-.+..-|+++....++..
T Consensus 252 fs~~f~~~~~~vg~~~~l~g~-~~y~~~~~~~~~R~~~~~t~~~~~ 296 (433)
T PF03092_consen 252 FSPSFYGTLSIVGSIASLLGI-LLYRKYFSNWSWRRIFVVTTLVSV 296 (433)
T ss_pred cCHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCCHHHHHHHHHHHHH
Confidence 899999988876666767665 666666566666776665555443
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.3e-10 Score=102.26 Aligned_cols=107 Identities=16% Similarity=0.079 Sum_probs=90.5
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSF--WMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLS 78 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~ 78 (362)
+++++.|+++||+|||+.+..+....+++..+..+.++. ..+....++.|++.+...+. ..++.|.+|+++|+++++
T Consensus 255 ~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g 334 (377)
T TIGR00890 255 GGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYG 334 (377)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhH
Confidence 467889999999999999999999888888877776643 33445677788877766666 889999999999999999
Q ss_pred HHHHhhhhhhhhhhhhhhhhcCccccCCccccccccc
Q 041273 79 TLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMF 115 (362)
Q Consensus 79 ~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~ 115 (362)
+.+....+|..++|.+.+.+.+ ..||+..|
T Consensus 335 ~~~~~~~~g~~~~~~~~g~l~~-------~~g~~~~f 364 (377)
T TIGR00890 335 FLYTAKAVAGIFGGLIASHALT-------EIGFEYTF 364 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-------hhchhhHH
Confidence 9999999999999999999988 77777666
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.11 E-value=9.3e-11 Score=107.46 Aligned_cols=106 Identities=14% Similarity=0.188 Sum_probs=84.5
Q ss_pred ccchhhhhhccc--CCchHHH--HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhH
Q 041273 3 TSVLWGMVADRC--GRKPVII--IGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGL 77 (362)
Q Consensus 3 ~~~~~G~l~Dr~--Grr~~l~--~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~ 77 (362)
++++.|+++||. ++|+... .+.+..+++.++..+.++++.+++.+++.|++.+...+. .+++.|.+|++++++.+
T Consensus 292 ~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~ 371 (455)
T TIGR00892 292 ARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAV 371 (455)
T ss_pred HHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHH
Confidence 467789999984 3343333 334444555556677888999999999999998887777 99999999999999999
Q ss_pred HHHHHhhhhhhhhhhhhhhhhcCccccCCccc-cccccc
Q 041273 78 STLSTAWGTGLIIGPAVGGFLAQPAEKYPKAF-SKESMF 115 (362)
Q Consensus 78 ~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~-gw~~~~ 115 (362)
++++...++|..+||.++|.+.+ .. +|+..|
T Consensus 372 g~~~~~~~lg~~igp~i~G~l~~-------~~g~~~~~f 403 (455)
T TIGR00892 372 GLVTIVECCAVLIGPPLAGRLVD-------ATKNYKYIF 403 (455)
T ss_pred hHHHHHHHHHHHccccceeeeeh-------hcCCcchHH
Confidence 99999999999999999999987 44 466655
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.2e-10 Score=102.20 Aligned_cols=129 Identities=16% Similarity=0.093 Sum_probs=102.3
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTL 80 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~ 80 (362)
++.++.|++.||.++|+.+..+.+..+++.++..+.++.+.+.+..++.|++.+...+. .+++.|..|+++|+++++++
T Consensus 274 ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~ 353 (417)
T PRK10489 274 LGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLW 353 (417)
T ss_pred HHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence 46778899999988888888888888888888888888888888888899988777677 88999999999999999999
Q ss_pred HHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHH-HHHHHHhhcccccC
Q 041273 81 STAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAF-AVTIASCWIPETLH 146 (362)
Q Consensus 81 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~~~ 146 (362)
.....+|..+||.+.|.+.+ ..|.+..+ ...+...+ +..+....+||.++
T Consensus 354 ~~~~~~g~~~g~~l~G~l~~-------~~g~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 404 (417)
T PRK10489 354 TAQNVTGDAIGAALLGGLGA-------MMTPVASA---------SASGFGLLIIGVLLLLVLGELRR 404 (417)
T ss_pred HHHHhhhHhHHHHHHHHHHH-------HhchhhHH---------HHHHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999998 45544433 33443333 34455566676554
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.1e-10 Score=101.90 Aligned_cols=99 Identities=20% Similarity=0.196 Sum_probs=86.3
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTL 80 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~ 80 (362)
+++++.|+++||+|||+.+..+.+...++.....+.++.+.+.+..++.|++.+...+. .+++.|.+|+++|++++++.
T Consensus 270 ~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~ 349 (406)
T PRK11551 270 LGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAA 349 (406)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHH
Confidence 46788999999999999998887777777777777778887777788888876666666 89999999999999999999
Q ss_pred HHhhhhhhhhhhhhhhhhcC
Q 041273 81 STAWGTGLIIGPAVGGFLAQ 100 (362)
Q Consensus 81 ~~~~~~g~~~g~~~~~~l~~ 100 (362)
+....+|..+||.++|.+.+
T Consensus 350 ~~~~~~g~~~g~~~~g~l~~ 369 (406)
T PRK11551 350 VAVGRLGSMAGPLLAGQLLA 369 (406)
T ss_pred HHhhhHHHHHHhhhHhhhhc
Confidence 99999999999999999987
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.8e-10 Score=102.85 Aligned_cols=106 Identities=13% Similarity=0.209 Sum_probs=79.9
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHhh-hcCcchhHHHHHHhhhccccchhhHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLS--VSFWMAIATRFLLGA-LNGLLGPIKAYACEILRDQHKTLGLS 78 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~-~~~~~~~~~~~i~~~~~~~~r~~~~~ 78 (362)
+++++.|+++||+|||+++..+..+..+..+..... .+.+.+.+..++.+. +.+.......++.|.+|+++|+++++
T Consensus 326 ~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 405 (496)
T PRK03893 326 VGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLG 405 (496)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccc
Confidence 567899999999999999988877766665544332 344444455555544 33333333788999999999999999
Q ss_pred HHHHhhhhhhhhhhhhhhhhcCccccCCcccccccc
Q 041273 79 TLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESM 114 (362)
Q Consensus 79 ~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~ 114 (362)
+......+|..+||.++|.+.+ .+||+..
T Consensus 406 ~~~~~~~~g~~lgp~l~g~l~~-------~~g~~~~ 434 (496)
T PRK03893 406 FTYNVGALGGALAPILGALIAQ-------RLDLGTA 434 (496)
T ss_pred hhhhhhhHHHHHHHHHHHHHhc-------cCChHHH
Confidence 9999999999999999999998 5665543
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.1e-09 Score=98.28 Aligned_cols=104 Identities=26% Similarity=0.363 Sum_probs=83.1
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTL 80 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~ 80 (362)
+++++.|++.||+|||+++..+.....++..... + ........++.|++.....|. .+.+.|..|+++++.+.+..
T Consensus 250 ~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 326 (381)
T PRK03633 250 LGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQAL 326 (381)
T ss_pred HHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 4678899999999999999888888777665443 2 233445667778766666677 88899999988888888888
Q ss_pred HHhhhhhhhhhhhhhhhhcCccccCCccccccccc
Q 041273 81 STAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMF 115 (362)
Q Consensus 81 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~ 115 (362)
....++|..+||.++|++.| +.||++.|
T Consensus 327 ~~~~~lG~~igp~~~G~l~~-------~~g~~~~f 354 (381)
T PRK03633 327 LLSYTVGSLLGPSFTAMLMQ-------NYSDNLLF 354 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HhCccHHH
Confidence 88999999999999999998 67776665
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.5e-09 Score=96.20 Aligned_cols=119 Identities=15% Similarity=0.193 Sum_probs=89.8
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHH-HHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFN-TLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLST 79 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~ 79 (362)
+++++.|+++||+|||+.... ..+..++. .+....++.+.+.+..++.|++.+...+. .+.+.|..| ++|+++++.
T Consensus 256 ~g~~~~g~l~dr~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~ 333 (390)
T PRK03545 256 IGSVLFSRLGNRHPSGFLLIA-IALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMAL 333 (390)
T ss_pred HHHHHHHHHhhccchhHHHHH-HHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHH
Confidence 467889999999998875544 44344443 33455677888888889999987766666 788888766 688999999
Q ss_pred HHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHH
Q 041273 80 LSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIAS 138 (362)
Q Consensus 80 ~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (362)
.+....+|..+||.++|.+.+ .+|++..+ .+.+++.++.++..
T Consensus 334 ~~~~~~~g~~~G~~~~G~~~~-------~~g~~~~~---------~~~~~~~~~~~~~~ 376 (390)
T PRK03545 334 FSGIFNIGIGAGALLGNQVSL-------HLGLSSIG---------YVGAALALAALVWS 376 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-------ccChhHHH---------HHHHHHHHHHHHHH
Confidence 999999999999999999998 77777666 55555555544443
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.6e-09 Score=100.03 Aligned_cols=128 Identities=17% Similarity=0.204 Sum_probs=91.2
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhh-----h------hHHHHHHHHHHHhhhcCcchhH-HHHHHhhhc
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLS-----V------SFWMAIATRFLLGALNGLLGPI-KAYACEILR 69 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~-----~------~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~ 69 (362)
++.++.|+++||+|||+.+..+..+.+++.++..+. + +...+....+..+.......+. ..++.|.+|
T Consensus 334 ~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 413 (481)
T TIGR00879 334 AFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFP 413 (481)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCC
Confidence 467889999999999999999888887777666521 1 2223333333333323233455 778899999
Q ss_pred cccchhhHHHHHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHH-HHhhccccc
Q 041273 70 DQHKTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTI-ASCWIPETL 145 (362)
Q Consensus 70 ~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~ 145 (362)
+++|+++++......++|..++|.+.+.+.+ ..+|+..| .+.++++++..+ ..++.||++
T Consensus 414 ~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~-------~~~~~~~f---------~~~~~~~~~~~i~~~~~~~~~~ 474 (481)
T TIGR00879 414 LSLRPKGISIAVAANWLANFIVGFLFPTMLE-------SIGVGGVF---------IFFGGLNVLGLIFVYFFLPETK 474 (481)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCcccee---------hhHHHHHHHHHHHHheecccCC
Confidence 9999999999999999999999999999887 67777766 455555554333 334566644
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.5e-09 Score=101.21 Aligned_cols=126 Identities=21% Similarity=0.186 Sum_probs=95.0
Q ss_pred ccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHH
Q 041273 3 TSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSF--WMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLST 79 (362)
Q Consensus 3 ~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~ 79 (362)
+.++.+++.||+|||+.+.++.++.+++.++..+.++. +...+.-++.+++.+...+. ..+..|.+|++.|+.++++
T Consensus 371 ~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~ 450 (505)
T TIGR00898 371 AKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGV 450 (505)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhH
Confidence 56778999999999999999999988888877776643 44445555666665555555 8999999999999999999
Q ss_pred HHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHhhcccccC
Q 041273 80 LSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLH 146 (362)
Q Consensus 80 ~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 146 (362)
.+....+|.+++|.+.+ +.+ .+ +..+..+.+...++..+...++||+..
T Consensus 451 ~~~~~~ig~~i~p~i~~-~~~--------~~---------~~~~~~~~~~~~~~~~~~~~~lpet~~ 499 (505)
T TIGR00898 451 CSTMARVGSIISPFLVY-LGE--------KW---------LFLPLVLFGGLALLAGILTLFLPETKG 499 (505)
T ss_pred HHHHHHHHHHHHhHHHH-HHH--------HH---------HhhHHHHHHHHHHHHHHHHHcCcCCCC
Confidence 99999999999999988 432 11 223335555555555566677888654
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.2e-09 Score=96.33 Aligned_cols=97 Identities=14% Similarity=0.125 Sum_probs=89.4
Q ss_pred ccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHHH
Q 041273 3 TSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTLS 81 (362)
Q Consensus 3 ~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~~ 81 (362)
+.++.|++.||+|+|+.+.++.+...+.....++++|.+.+++.++++|+..+...+. ..++.+. |+++|++..++++
T Consensus 256 ~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~ 334 (382)
T TIGR00902 256 IFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYN 334 (382)
T ss_pred HHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999999988887 9999998 9999999999876
Q ss_pred -HhhhhhhhhhhhhhhhhcC
Q 041273 82 -TAWGTGLIIGPAVGGFLAQ 100 (362)
Q Consensus 82 -~~~~~g~~~g~~~~~~l~~ 100 (362)
...++|..+||.++|++.|
T Consensus 335 ~~~~g~g~~~g~~~~G~l~~ 354 (382)
T TIGR00902 335 ALAMGGLIAIFTAFAGFIYP 354 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999998
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.8e-09 Score=96.51 Aligned_cols=129 Identities=17% Similarity=0.189 Sum_probs=86.8
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhh---h-hhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhh
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGL---S-VSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLG 76 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~---~-~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~ 76 (362)
++.++.|+++||+|||+.+..+.++..++...+.. . ++.+.+++..++.+++.+...+. .+++.|.+|.+.|+.+
T Consensus 301 i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg 380 (438)
T PRK09952 301 LTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSG 380 (438)
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHH
Confidence 35568899999999999998887766555433322 1 23444445566667777766665 8999999999999888
Q ss_pred HHHHH-HhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHhhcccc
Q 041273 77 LSTLS-TAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPET 144 (362)
Q Consensus 77 ~~~~~-~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 144 (362)
.++.. .+..+|..++|.+.+++.+.. ..+|+.. ....++.+++..+..+.++|+
T Consensus 381 ~g~~~~~~~~lgg~~~p~i~g~l~~~~-----~~~~~~~---------~~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 381 AGVGYQVASVVGGGFTPFIAAALVTYF-----GGSWHSV---------AIYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCchHH---------HHHHHHHHHHHHHHHHHcccc
Confidence 88754 445589999999999997611 0123322 244555555555555566663
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.9e-07 Score=81.48 Aligned_cols=303 Identities=15% Similarity=0.090 Sum_probs=154.9
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHh------hhh---------hHHHHHHHHHHHhhhcCcchhH--HHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFG------LSV---------SFWMAIATRFLLGALNGLLGPI--KAYA 64 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~------~~~---------~~~~l~~~r~l~G~~~~~~~~~--~~~i 64 (362)
+.++..|.+.||..|.+++-.+.+..-++..+.. +.. ..+.+++.-.+.|...-....+ .+.=
T Consensus 53 ~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavE 132 (432)
T PF06963_consen 53 LFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVE 132 (432)
T ss_pred HhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheec
Confidence 4678899999999999887776554433332221 111 1122222222223222111221 2222
Q ss_pred Hhhh------ccccchhhHHHHHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHH-
Q 041273 65 CEIL------RDQHKTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIA- 137 (362)
Q Consensus 65 ~~~~------~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~- 137 (362)
.||. +++++.+.++...-.--+..+++|++.|.+.+ ..+. .....+.+...++.+..
T Consensus 133 RDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t-------~~s~---------~~~~~~i~~~N~~S~~vE 196 (432)
T PF06963_consen 133 RDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMT-------FASP---------VIAAIFIAGWNLASVFVE 196 (432)
T ss_pred cchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------ccCH---------HHHHHHHHHHHHHHHHHH
Confidence 2332 34556777777777778889999999999987 2222 22223333333332211
Q ss_pred ---HhhcccccCCCCcCCccccccchhhhhhcCCCCccccc--c-----CcccchhhhcccccchhHHHHHHHHHHHHHH
Q 041273 138 ---SCWIPETLHKHNEDGVSLDVSCDALESACGSNAEFKQD--E-----GSEEATAKKSLMKNWPFISSTIVYCVFSLHD 207 (362)
Q Consensus 138 ---~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (362)
...+.+..+....++++.+...+..++ ...+++.+.. + -++....++..++++.+...+... +.++..
T Consensus 197 y~~l~~VY~~~P~L~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vflas~ala-lLY~TV 274 (432)
T PF06963_consen 197 YFLLARVYNSVPALAVKKRSSESESSSDEE-SSSESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFLASFALA-LLYFTV 274 (432)
T ss_pred HHHHHHHHHhChHhcCCCCCcccccccccc-ccccccchhhHHHHHHHHHHHHhccHHHHHhCHHHHHHHHHH-HHHHHH
Confidence 111112111111111111100000000 0000000000 0 011123456667766555544443 334445
Q ss_pred hHHHHHHHhHhcccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 041273 208 IAYTEIFSLWAISPWKYGGLSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLS 287 (362)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (362)
.++...+..|+.+. |+++...|..-+...+.++.++ ++.+++.+|+|..+.-.++......++......-..+
T Consensus 275 Lsf~~lmt~yl~~~------G~s~~~igi~R~~gav~Gl~gT-~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~ 347 (432)
T PF06963_consen 275 LSFGGLMTAYLKSQ------GYSPSVIGIFRGLGAVFGLLGT-WVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAP 347 (432)
T ss_pred hcCcHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcC
Confidence 56777788788774 9999999999999999999997 9999999999999888777776655543332222222
Q ss_pred h----hhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhccccccCCC
Q 041273 288 G----FSLALLINCASVMKNVLSVSIMTGLFLLQNRAVSQKRQGAG 329 (362)
Q Consensus 288 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 329 (362)
+ ......+..+....=.+--+.-.+..-+++|.+|+++.+..
T Consensus 348 ~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v 393 (432)
T PF06963_consen 348 GSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAV 393 (432)
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHH
Confidence 1 11222222222222222223334556677788886665543
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.8e-08 Score=89.55 Aligned_cols=151 Identities=11% Similarity=0.054 Sum_probs=101.7
Q ss_pred chhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHH
Q 041273 191 WPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAG 270 (362)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~ 270 (362)
|.++.+.+..++..........++|.|+.+. +|+|+.+.|...+...+...+.+ +..|++.||+|+|+.+..+.
T Consensus 7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~-----~g~s~~~~g~~~s~~~~~~~~~~-~~~G~l~Dr~g~k~~~~~~~ 80 (395)
T PRK10054 7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQ-----YSLSVDLIGYAMTIALTIGVVFS-LGFGILADKFDKKRYMLLAI 80 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHhhcCcchhHHHHH
Confidence 4466666666676666666667778777655 79999999999999999999988 88999999999999998888
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhccccccCCCC--------------------
Q 041273 271 VLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMTGLFLLQNRAVSQKRQGAGF-------------------- 330 (362)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-------------------- 330 (362)
....++.+.+++.++. +... +...+.+.......+.......|..|+++.+..+
T Consensus 81 ~~~~~~~~~~~~~~~~-----~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~ 154 (395)
T PRK10054 81 TAFASGFIAIPLVNNV-----TLVV-LFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTL 154 (395)
T ss_pred HHHHHHHHHHHHHhHH-----HHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777776666555432 1111 1112222232344566777778877643321110
Q ss_pred --CCChhHHHHHHHHHHHHHHHhhc
Q 041273 331 --LPGNQMIFFILNLVEALGVILTF 353 (362)
Q Consensus 331 --~~g~~~~f~~~~~~~~i~~~~~~ 353 (362)
..|++.+|.+.+++.+++.+...
T Consensus 155 l~~~g~~~~f~~~~~~~~i~~i~~~ 179 (395)
T PRK10054 155 LVMQSINLPFWLAAICSAFPLVFIQ 179 (395)
T ss_pred HHHhccCcHHHHHHHHHHHHHHHHH
Confidence 01567788888877777755443
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=98.93 E-value=4e-08 Score=90.97 Aligned_cols=127 Identities=14% Similarity=0.131 Sum_probs=92.8
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHH---hhh-hhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhh
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLF---GLS-VSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLG 76 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~---~~~-~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~ 76 (362)
++.++.|+++||+|||+.+.++.++.++..... +.. ++.+.+...-+++.+..+...+. .++..+..+++.+++.
T Consensus 274 iG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~ 353 (491)
T PRK11010 274 VGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQ 353 (491)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHH
Confidence 567889999999999988877666555544322 232 35555555566666555555455 8889999999999999
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHhhcccc
Q 041273 77 LSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPET 144 (362)
Q Consensus 77 ~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 144 (362)
+++.+...++|..+++.+.|++.+ ..||+..| .+.++++++.++....++++
T Consensus 354 ~gl~~s~~~lg~~~~~~~~G~l~~-------~~G~~~~f---------~~~~~~~l~~l~~~~~~~~~ 405 (491)
T PRK11010 354 FALLSALSAVGRVYVGPVAGWFVE-------AHGWPTFY---------LFSVAAAVPGLLLLLVCRQT 405 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HhChHHHH---------HHHHHHHHHHHHHHHHHHhc
Confidence 999999999999988889999998 67776665 56666666665555556554
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.1e-09 Score=94.96 Aligned_cols=129 Identities=16% Similarity=0.221 Sum_probs=102.7
Q ss_pred cccchhhhhhcccCCc--hHHHHHHHHHHHHHHHHhh--------hhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhcc
Q 041273 2 LTSVLWGMVADRCGRK--PVIIIGCITVVIFNTLFGL--------SVSFWMAIATRFLLGALNGLLGPI-KAYACEILRD 70 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr--~~l~~~~~~~~~~~~~~~~--------~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~ 70 (362)
+|++++|++.||+|.| +++..++..+.+..+.-.+ .++-+.+.+.-++.|+..|...+. .++.+|..|+
T Consensus 332 ~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~ 411 (477)
T PF11700_consen 332 IGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPP 411 (477)
T ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCC
Confidence 5789999999999999 8999888888666555555 567888999999999999998887 9999999999
Q ss_pred ccchhhHHHHHHhhhhhhhhhhhhhhhhcCccccCCcccc-cccccccccchhhHHHHHHHHHHHHHHHhhcccccC
Q 041273 71 QHKTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFS-KESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLH 146 (362)
Q Consensus 71 ~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~g-w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 146 (362)
++.+..+|++....-....+||++.+.+.+ ..| -|..+ ....++.++.++....+++++.
T Consensus 412 g~e~efFgly~i~gk~ss~lGPll~g~i~~-------~tg~~r~g~---------~~l~~lf~~gl~ll~~v~~~~g 472 (477)
T PF11700_consen 412 GREAEFFGLYAITGKASSWLGPLLFGLITD-------ATGSQRYGF---------LFLLVLFLIGLILLFFVDVEKG 472 (477)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhCCchhHH---------HHHHHHHHHHHHHHhhccchhh
Confidence 999999999999999999999999999998 332 22222 3444444455555566665443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.5e-09 Score=96.87 Aligned_cols=99 Identities=21% Similarity=0.189 Sum_probs=73.9
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHH--HhhhhhHHHHHHHHHHHhhhcCc-chhHHHHHHhhhccccchhhHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTL--FGLSVSFWMAIATRFLLGALNGL-LGPIKAYACEILRDQHKTLGLS 78 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~--~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~ 78 (362)
++.+++|+++||+|||+.+........++..+ ....++.+.+.+.+++.|+.... .........|..|+++|+.+.|
T Consensus 309 ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~g 388 (467)
T PRK09556 309 VGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANG 388 (467)
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHH
Confidence 57889999999999998776654444433322 23345666677788888864332 2333567779999999999999
Q ss_pred HHHHhhhh-hhhhhhhhhhhhcC
Q 041273 79 TLSTAWGT-GLIIGPAVGGFLAQ 100 (362)
Q Consensus 79 ~~~~~~~~-g~~~g~~~~~~l~~ 100 (362)
+.+...++ |..++|.+.|++.+
T Consensus 389 i~~~~g~l~g~~~~~~~~G~i~~ 411 (467)
T PRK09556 389 IKGTFAYLFGDSFAKVGLGMIAD 411 (467)
T ss_pred HHHHHHHHHhHHHHhhhHHHHhc
Confidence 99988886 77999999999987
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=98.89 E-value=1e-08 Score=95.33 Aligned_cols=98 Identities=16% Similarity=0.116 Sum_probs=70.6
Q ss_pred ccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhh----HHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhH
Q 041273 3 TSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVS----FWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGL 77 (362)
Q Consensus 3 ~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~----~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~ 77 (362)
+.++.++++||+|||+.++.+..+.+++..+..+..+ ...+...-+...++.....+. ..+.+|.+|.+.|++++
T Consensus 351 g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~ 430 (502)
T TIGR00887 351 GYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAH 430 (502)
T ss_pred HHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHH
Confidence 4567789999999999998888777777665554321 111111111122222222344 77889999999999999
Q ss_pred HHHHHhhhhhhhhhhhhhhhhcC
Q 041273 78 STLSTAWGTGLIIGPAVGGFLAQ 100 (362)
Q Consensus 78 ~~~~~~~~~g~~~g~~~~~~l~~ 100 (362)
++.+....+|..++|.+.+++.+
T Consensus 431 g~~~~~~~~~~~~~~~~~~~l~~ 453 (502)
T TIGR00887 431 GISAASGKAGAIIGQFGFLYLAQ 453 (502)
T ss_pred HHHHHHhhhHHHHHHHHhhhhhc
Confidence 99999999999999999999886
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=98.88 E-value=1e-08 Score=92.64 Aligned_cols=123 Identities=20% Similarity=0.299 Sum_probs=86.2
Q ss_pred cccchhhhhhcccCCchHHH-HHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHhhhcCcchhHHHHHHhhhccccchh
Q 041273 2 LTSVLWGMVADRCGRKPVII-IGCITVVIFNTLFGL-----SVSFWMAIATRFLLGALNGLLGPIKAYACEILRDQHKTL 75 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~-~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~r~~ 75 (362)
++++..|+++||+|||+.+. .+.+..+++.....+ .++.+.+.+..++.|++.+...+....+.|.. +++|++
T Consensus 272 ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~-~~~~g~ 350 (402)
T TIGR00897 272 VFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVPLAAVFPTLA-PKHKGA 350 (402)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-cchhHH
Confidence 46788999999999988764 333333333333322 24566777788888887766555566667754 568999
Q ss_pred hHHHHHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHhhc
Q 041273 76 GLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWI 141 (362)
Q Consensus 76 ~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (362)
++|+.+....+|..++|.+++.+.+ ..||+..+ .+.+++.++..+...++
T Consensus 351 ~~g~~~~~~~lg~~~gp~i~g~l~~-------~~g~~~~~---------~~~a~~~~i~~~~~~~~ 400 (402)
T TIGR00897 351 AMSVLNLSAGLSAFLAPAIAVLFIG-------FFGAIGVV---------WIFAALYVVSAFLTAFI 400 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-------hcchHHHH---------HHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998 56665554 55555555544444443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.6e-09 Score=93.64 Aligned_cols=106 Identities=8% Similarity=0.033 Sum_probs=86.1
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTL 80 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~ 80 (362)
++.++.|+++||+|||+.+.....+..+...+....++.+.+.+..++.|++.+...+. .++..|..| +++++..+..
T Consensus 256 ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~ 334 (394)
T PRK03699 256 VGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFI 334 (394)
T ss_pred HHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHH
Confidence 57788999999999999998888777777777767778777777788888877666565 777777765 4567888888
Q ss_pred HHhhhhhhhhhhhhhhhhcCccccCCccccccccc
Q 041273 81 STAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMF 115 (362)
Q Consensus 81 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~ 115 (362)
.....+|..++|.+.|.+.+ ..|++..+
T Consensus 335 ~~~~~~g~~i~p~~~G~l~~-------~~g~~~~~ 362 (394)
T PRK03699 335 LTCGTIGTMLTFVVTSPIVA-------HFGLQAAL 362 (394)
T ss_pred HHhhhHHHHHHHHHHHHHHH-------HhCchhhh
Confidence 89999999999999999998 67776655
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=8.2e-09 Score=95.58 Aligned_cols=98 Identities=21% Similarity=0.195 Sum_probs=72.9
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhh--h-HH-HHHHHHHHHhhhcCc-chhH-HHHHHhhhccccchh
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSV--S-FW-MAIATRFLLGALNGL-LGPI-KAYACEILRDQHKTL 75 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~--~-~~-~l~~~r~l~G~~~~~-~~~~-~~~i~~~~~~~~r~~ 75 (362)
++.++.|+++||+|||+.++.+..+.+++.++++... + .+ ......++.+.+.+. ..|. ..++.|.+|+++|++
T Consensus 321 i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 400 (479)
T PRK10077 321 TFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGK 400 (479)
T ss_pred HHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHH
Confidence 4578899999999999999999999888877765432 1 11 222233344443332 3466 899999999999999
Q ss_pred hHHHHHHhhhhhhhhhhhhhhhhc
Q 041273 76 GLSTLSTAWGTGLIIGPAVGGFLA 99 (362)
Q Consensus 76 ~~~~~~~~~~~g~~~g~~~~~~l~ 99 (362)
++++......+|..+++.+.+.+.
T Consensus 401 ~~g~~~~~~~~g~~~~~~~~p~~~ 424 (479)
T PRK10077 401 ALAIAVAAQWIANYFVSWTFPMMD 424 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHH
Confidence 999999999999998876665444
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=9.3e-09 Score=94.98 Aligned_cols=98 Identities=21% Similarity=0.259 Sum_probs=81.2
Q ss_pred ccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHH
Q 041273 3 TSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLS---VSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLS 78 (362)
Q Consensus 3 ~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~ 78 (362)
+.++.|+++||+|||+++..+..+.++...+..+. ++.+.+.+.-++.|++.+...+. ..++.+..|+++|+.+++
T Consensus 313 ~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 392 (471)
T PRK10504 313 MKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNS 392 (471)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHH
Confidence 34678999999999999999988888776666553 33444455667788887776666 889999999999999999
Q ss_pred HHHHhhhhhhhhhhhhhhhhcC
Q 041273 79 TLSTAWGTGLIIGPAVGGFLAQ 100 (362)
Q Consensus 79 ~~~~~~~~g~~~g~~~~~~l~~ 100 (362)
..+....+|..+|+.+++.+.+
T Consensus 393 ~~~~~~~~g~~ig~~i~g~ll~ 414 (471)
T PRK10504 393 LLSMIMQLSMSIGVTIAGLLLG 414 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999876
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=2e-08 Score=90.41 Aligned_cols=130 Identities=11% Similarity=-0.012 Sum_probs=90.0
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHhhhcCcchhH-HHHHHhhhc-cccchhhHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSV-SFWMAIATRFLLGALNGLLGPI-KAYACEILR-DQHKTLGLS 78 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~-~~~r~~~~~ 78 (362)
++.+..|++.||+|||+.+..+..+..++.......+ +...+. -++.|++.+...|. .....|..+ +++|++.++
T Consensus 255 ~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g 332 (393)
T PRK09705 255 AGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVLW--AMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVA 332 (393)
T ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHHH--HHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHH
Confidence 5678899999999999999888877777766554323 322222 24567777766665 666667774 678999999
Q ss_pred HHHHhhhhhhhhhhhhhhhhcCccccCCcccc-cccccccccchhhHHHHHHHHHH-HHHHHhhcccccCCCC
Q 041273 79 TLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFS-KESMFGKFPYFLPCLCMSLFAFA-VTIASCWIPETLHKHN 149 (362)
Q Consensus 79 ~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~g-w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~ 149 (362)
..+....++..++|.+.+++.+ ..| |+..| .+.++.++. ........||+++++.
T Consensus 333 ~~~~~~~~~~~~gp~~~G~l~~-------~~g~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK09705 333 FMQGIGFIIAGLAPWFSGVLRS-------ISGNYLMDW---------AFHALCVVGLMIITLRFAPARFPQLW 389 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HhCCchHHH---------HHHHHHHHHHHHHHHHhccccccchh
Confidence 9999999999999999999998 333 22222 444444444 3444556777665443
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.2e-09 Score=94.06 Aligned_cols=99 Identities=24% Similarity=0.284 Sum_probs=76.3
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHH--HHHhh--hhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhh
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFN--TLFGL--SVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLG 76 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~--~~~~~--~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~ 76 (362)
++.++.|+++||+|||+.+.....+..+.. ....+ .++.+.+....++.|++.+...+. .+++.|.+|+++|+++
T Consensus 270 ~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~ 349 (394)
T TIGR00883 270 ITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTG 349 (394)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeE
Confidence 456789999999999998776554444333 22222 246677777788888887776666 9999999999999999
Q ss_pred HHH-HHHhhhhhhhhhhhhhhhhcC
Q 041273 77 LST-LSTAWGTGLIIGPAVGGFLAQ 100 (362)
Q Consensus 77 ~~~-~~~~~~~g~~~g~~~~~~l~~ 100 (362)
++. .+....+|..++|.+++.+.+
T Consensus 350 ~~~~~~~~~~~g~~~~p~~~g~l~~ 374 (394)
T TIGR00883 350 ASLAYNLAGAIFGGFAPYIAAALVA 374 (394)
T ss_pred eeehhHhHHHHHhhHHHHHHHHHHH
Confidence 997 456677899999999999998
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.2e-08 Score=92.06 Aligned_cols=99 Identities=17% Similarity=0.241 Sum_probs=79.7
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHH-HHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNT-LFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLST 79 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~ 79 (362)
++.++.|+++||+|||+.+..+.....+... .....++.+.+.+..++.|+..+...+. .+++.|.+|+++|++++|+
T Consensus 289 ~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 368 (405)
T TIGR00891 289 VGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGF 368 (405)
T ss_pred HHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhH
Confidence 4678899999999999999888776533332 3334556667777767777765555455 8899999999999999999
Q ss_pred HHHhhhhhhhhhhhhhhhhcC
Q 041273 80 LSTAWGTGLIIGPAVGGFLAQ 100 (362)
Q Consensus 80 ~~~~~~~g~~~g~~~~~~l~~ 100 (362)
.+...++|..++|.+.|++.+
T Consensus 369 ~~~~~~~g~~~g~~~~g~l~~ 389 (405)
T TIGR00891 369 TYQLGNLGGALAPIIGALLAQ 389 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.3e-08 Score=89.79 Aligned_cols=106 Identities=19% Similarity=0.123 Sum_probs=72.8
Q ss_pred cccchhhhhhcccCCch--HHH------HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhcccc
Q 041273 2 LTSVLWGMVADRCGRKP--VII------IGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQH 72 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~--~l~------~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~ 72 (362)
+++++.|+++||+|||+ ... .+.+...+........++.+.......+.+.+.+ ..+. .+++.|..|+++
T Consensus 266 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 344 (399)
T TIGR00893 266 IGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNI 344 (399)
T ss_pred HHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhH
Confidence 46788999999999996 111 1111111111222223344444444444444555 5566 999999999999
Q ss_pred chhhHHHHHHhhhhhhhhhhhhhhhhcCccccCCcccc-ccccc
Q 041273 73 KTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFS-KESMF 115 (362)
Q Consensus 73 r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~g-w~~~~ 115 (362)
|++++++.+...++|..++|.+.+.+.+ ..| |+..+
T Consensus 345 ~g~~~~~~~~~~~~g~~~~~~i~g~l~~-------~~g~~~~~~ 381 (399)
T TIGR00893 345 AGLTGGLINSLGNLGGIVGPIVIGAIAA-------TTGSFAGAL 381 (399)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHhhhhcc-------CCCchhHHH
Confidence 9999999999999999999999999998 555 65554
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.4e-08 Score=92.85 Aligned_cols=99 Identities=14% Similarity=0.171 Sum_probs=84.1
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhc-------ccc
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLS-VSFWMAIATRFLLGALNGLLGPI-KAYACEILR-------DQH 72 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~-------~~~ 72 (362)
++.+++|+++||+|||+.+..+..+.+++.+...+. ++.+.+.+..++.|++.+...+. .++++|..+ +++
T Consensus 272 i~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (437)
T TIGR00792 272 IGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRA 351 (437)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccc
Confidence 467889999999999999999988888887776665 46677777788889988877776 889998875 456
Q ss_pred chhhHHHHHHhhhhhhhhhhhhhhhhcC
Q 041273 73 KTLGLSTLSTAWGTGLIIGPAVGGFLAQ 100 (362)
Q Consensus 73 r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 100 (362)
+|.++++.+....+|..+++.+.+.+.+
T Consensus 352 ~G~~~~~~~~~~~~g~~lg~~i~g~ll~ 379 (437)
T TIGR00792 352 EGLVYSVRTFVRKLGQALAGFLVGLILG 379 (437)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999987
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.77 E-value=7.9e-07 Score=79.52 Aligned_cols=297 Identities=13% Similarity=0.040 Sum_probs=169.4
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTL 80 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~ 80 (362)
+.+++.+.+.|+.|.|+.+.++..........+.+- |-+.++....+.|+|.+..... ..+++|..++|++.+..++.
T Consensus 65 v~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~-N~y~~yfssallG~Gaallw~GqG~ylt~~st~~tie~Nisi~ 143 (461)
T KOG3098|consen 65 VSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFP-NSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRETIERNISIF 143 (461)
T ss_pred HHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc-chHHHHHHHHHhhhhHHheecccceehhhcCChhhHHHHHHHH
Confidence 467889999999999999999999888766655544 4677888899999999998888 99999999999999999999
Q ss_pred HHhhhhhhhhhhhhhhhhcCccccC-Cccccc-ccccccccchhhHHHHHHHHHHH------HHHHhhcccccCCC-CcC
Q 041273 81 STAWGTGLIIGPAVGGFLAQPAEKY-PKAFSK-ESMFGKFPYFLPCLCMSLFAFAV------TIASCWIPETLHKH-NED 151 (362)
Q Consensus 81 ~~~~~~g~~~g~~~~~~l~~~~~~~-~~~~gw-~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~e~~~~~-~~~ 151 (362)
......+.++|..+-..+....+.. ....+- +..+... .....+..+..++. .....+.|.+.... .++
T Consensus 144 Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~~~~~~~~~ 221 (461)
T KOG3098|consen 144 WAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVL--FIDFEIKVLFGVLLAISVLSIINFDFLPSKDVVNCKSS 221 (461)
T ss_pred HHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchh--hhhHHHHHHHHHHHHHHHHHhhheeecCccchhhhhhh
Confidence 9999999988877766655422210 001111 1111000 00001111111111 11111222211100 000
Q ss_pred CccccccchhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCc
Q 041273 152 GVSLDVSCDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYST 231 (362)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~ 231 (362)
. + . ...+..+...+++++++++.+....+...+...-+...+|.-+.... ..+.+.
T Consensus 222 ~-~-~-------------------~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~---~~~~n~ 277 (461)
T KOG3098|consen 222 S-E-T-------------------SFSELLKLTFKLLKTPKMLLLFPFFFYTGLETSFWISIYPTCISFTR---KLGSNT 277 (461)
T ss_pred c-c-c-------------------cHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhhh---hccCcc
Confidence 0 0 0 00012234455678888887777766655555555555554433220 122222
Q ss_pred h-hhHHHHHHHHHHHHHHHHHHHHHHHH---hhchhHHHHHHHHHHHHHHHHHHHHHhhhh------------hhHHHHH
Q 041273 232 E-NAGQVLAISGFSLLVFQLTLYPYVER---MIGPIIITRIAGVLSIPLLTSYTYIAMLSG------------FSLALLI 295 (362)
Q Consensus 232 ~-~~g~~~~~~~~~~~~~~~~~~~~l~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~ 295 (362)
. ..+......+.+..+++ ...+.+.| ++|+++.+.++..+..+..++.-....... .....+.
T Consensus 278 ~~~~ai~~~~~g~g~v~~g-~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~ 356 (461)
T KOG3098|consen 278 TYLIAIYSIGIGLGEVIGG-LDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLA 356 (461)
T ss_pred hhHHHHHHHHHhHHHHHHH-HHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHH
Confidence 2 23444445555555554 44444554 467888887777776666544432211100 0113344
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhhhcccccc
Q 041273 296 NCASVMKNVLSVSIMTGLFLLQNRAVSQKRQ 326 (362)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 326 (362)
.+...+.+..-.......+.++....|++|.
T Consensus 357 ~ii~~l~G~~D~~~~t~~~~ii~~~~~~~~~ 387 (461)
T KOG3098|consen 357 LIIGFLLGFGDACFNTQRYVIIALLYPDDRA 387 (461)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhcCchH
Confidence 4555565666677778888899998886665
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.5e-08 Score=88.51 Aligned_cols=97 Identities=16% Similarity=0.128 Sum_probs=84.0
Q ss_pred ccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHHH
Q 041273 3 TSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTLS 81 (362)
Q Consensus 3 ~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~~ 81 (362)
..++.|++.||+|+|+.+..+.+..+++.++....++.+.+++..++.|++.+...+. ..++.+. +++++++..+..+
T Consensus 256 ~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 334 (382)
T PRK11128 256 IFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYS 334 (382)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHH
Confidence 4577899999999999999999999998888888999999999999999998877777 8888886 5666788888876
Q ss_pred -HhhhhhhhhhhhhhhhhcC
Q 041273 82 -TAWGTGLIIGPAVGGFLAQ 100 (362)
Q Consensus 82 -~~~~~g~~~g~~~~~~l~~ 100 (362)
...++|..+||.++|.+.|
T Consensus 335 ~~~~~~g~~ig~~i~G~l~~ 354 (382)
T PRK11128 335 ALAMGGSIAIMTVLSGFLYQ 354 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 6667888999999999998
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.3e-07 Score=82.50 Aligned_cols=150 Identities=8% Similarity=0.055 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHH
Q 041273 197 TIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPL 276 (362)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~ 276 (362)
....++...........+|.|..+ .+.++.+.|.+.+...++..+.+ +..+++.||+|||+.+..+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~s~~~~g~~~~~~~~~~~i~~-~~~G~l~dr~g~r~~~~~~~~~~~~~ 77 (365)
T TIGR00900 5 FAAQLISLIGTAITQVALPLYVLA------GTGSASVLSLAALAGMLPYVVLS-PIAGALADRYDRKKVMIGADLIRAVL 77 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------hhccHHHHHHHHHHHHHHHHHHH-HhhhHHHHhhchhHHHHHHHHHHHHH
Confidence 344444445555555566766544 57899999999999999999998 89999999999999999888887777
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhccccccCCCCC-----------------------CC
Q 041273 277 LTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMTGLFLLQNRAVSQKRQGAGFL-----------------------PG 333 (362)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-----------------------~g 333 (362)
.....+.....+...+ ...+...+.+.......+...+++.|..|+++.+.... .|
T Consensus 78 ~~~~~~~~~~~~~~~~-~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g 156 (365)
T TIGR00900 78 VAVLPFVALLGGLNIW-QVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLG 156 (365)
T ss_pred HHHHHHHHHcCCCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6666555422111122 22333344444555667888899999988544321110 14
Q ss_pred hhHHHHHHHHHHHHHHHhhcc
Q 041273 334 NQMIFFILNLVEALGVILTFK 354 (362)
Q Consensus 334 ~~~~f~~~~~~~~i~~~~~~~ 354 (362)
.+..|++.++..+++.+..+.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~ 177 (365)
T TIGR00900 157 IKWAIWVDAVGFAISALLIVS 177 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 567777777766666554443
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=98.76 E-value=8.2e-07 Score=80.12 Aligned_cols=81 Identities=17% Similarity=0.220 Sum_probs=68.1
Q ss_pred cchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHH
Q 041273 190 NWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIA 269 (362)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~ 269 (362)
||.++.....+++.......+..++|.|+.+. +|+++.+.|...+...+...+.+ +..|+++||+|||+.+..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~g~~~~~~~l~~~i~~-~~~G~l~Dr~grr~~~~~~ 74 (396)
T TIGR00882 1 NTNFWMFGLFFFLYFFIMSAYFPFFPIWLHDV-----NGLSKTDTGIVFSCISLFSILFQ-PLFGLISDKLGLKKHLLWI 74 (396)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCcHHHHHHH
Confidence 46778888888888877777777888887665 79999999999999999999998 8999999999999998876
Q ss_pred HHHHHHH
Q 041273 270 GVLSIPL 276 (362)
Q Consensus 270 ~~~~~~~ 276 (362)
.....+.
T Consensus 75 ~~~~~~~ 81 (396)
T TIGR00882 75 ISGLLVL 81 (396)
T ss_pred HHHHHHH
Confidence 6655443
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.2e-07 Score=82.79 Aligned_cols=147 Identities=9% Similarity=0.021 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Q 041273 195 SSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSI 274 (362)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~ 274 (362)
......++..........+++.|+.+. +|+|+.+.|+..+...+...+.+ ++.+++.||+|+|+.+..+.....
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~gl~~~~~~l~~~~~~-~~~G~l~dr~g~k~~l~~~~~~~~ 87 (400)
T PRK11646 14 FLLIDNMLVVLGFFVVFPLISIRFVDQ-----LGWAAVMVGIALGLRQFIQQGLG-IFGGAIADRFGAKPMIVTGMLMRA 87 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCcHHHHHHHHHHHHHHHHHHH-hhhhHHHHHhCchHHHHHHHHHHH
Confidence 334455555555555566667666554 79999999999999898888887 889999999999999999999888
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhccccccCCCC----------------------CC
Q 041273 275 PLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMTGLFLLQNRAVSQKRQGAGF----------------------LP 332 (362)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~----------------------~~ 332 (362)
++.+.+.+.++ .+. ..+...+.+.......|....++.+..|+++.+... ..
T Consensus 88 ~~~~~~~~~~~-----~~~-l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~ 161 (400)
T PRK11646 88 AGFATMAIAHE-----PWL-LWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQY 161 (400)
T ss_pred HHHHHHHHhcc-----HHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 87777655432 222 222333333344445577788888888744332111 11
Q ss_pred ChhHHHHHHHHHHHHHHHhhc
Q 041273 333 GNQMIFFILNLVEALGVILTF 353 (362)
Q Consensus 333 g~~~~f~~~~~~~~i~~~~~~ 353 (362)
|.+.+|++.+++.++..++..
T Consensus 162 g~~~~f~~~~~~~~~~~i~~~ 182 (400)
T PRK11646 162 DFRLVCATGAVLFVLAAAFNA 182 (400)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 567788887777666654443
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.8e-07 Score=85.47 Aligned_cols=144 Identities=10% Similarity=0.039 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Q 041273 195 SSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSI 274 (362)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~ 274 (362)
...+.+++.......+....|.+..+ +|+|+.+.|.+.+...++..+++ +..+++.||+|+|+.+..+..+..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~s~~~~g~~~~~~~~~~~~~~-~~~G~l~dr~g~r~~~~~~~~~~~ 99 (434)
T PRK11663 27 TMYLGYALFYFTRKSFNAAMPEMLAD------LGLSRSDIGLLATLFYITYGVSK-FVSGIVSDRSNARYFMGIGLIATG 99 (434)
T ss_pred HHHHHHHHHHHhhhhHHHhhHHHHHh------cCCCHHHHHHHHHHHHHHHHHHH-hhhhHHHhhcCCchhHHHHHHHHH
Confidence 33444444444444455555655433 79999999999999999999998 899999999999999999988888
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhccccccCCCC-----------------------C
Q 041273 275 PLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMTGLFLLQNRAVSQKRQGAGF-----------------------L 331 (362)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-----------------------~ 331 (362)
++.++.++..+. +. ..+...+.+.......+....++++.+|+++.+... .
T Consensus 100 ~~~~~~~~~~~~-----~~-l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~ 173 (434)
T PRK11663 100 IINILFGFSSSL-----WA-FALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALH 173 (434)
T ss_pred HHHHHHHHHhHH-----HH-HHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 877766554432 11 112222222333344577788888888854332110 1
Q ss_pred CChhHHHHHHHHHHHHHHHh
Q 041273 332 PGNQMIFFILNLVEALGVIL 351 (362)
Q Consensus 332 ~g~~~~f~~~~~~~~i~~~~ 351 (362)
.|.+.+|.+.+++.++..+.
T Consensus 174 ~gw~~~f~~~~i~~~~~~~~ 193 (434)
T PRK11663 174 YGWRYGMMIAGIIAIVVGLF 193 (434)
T ss_pred ccHHHHHHHHHHHHHHHHHH
Confidence 15778888877766554433
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.8e-07 Score=82.69 Aligned_cols=156 Identities=7% Similarity=0.047 Sum_probs=102.4
Q ss_pred chhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHH
Q 041273 191 WPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAG 270 (362)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~ 270 (362)
+.++......+............+|.+..+ +|++..+.|...+...++..+++ +..+++.||+|||+.+..+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~g~s~~~~g~~~s~~~~~~~~~~-~~~g~l~dr~g~r~~~~~~~ 75 (382)
T PRK10091 3 KVILSLALGTFGLGMAEFGIMGVLTELAHD------VGISIPAAGHMISYYALGVVVGA-PIIALFSSRYSLKHILLFLV 75 (382)
T ss_pred chHHHHHHHHHHHHhhHHHHHhChHHHHHH------cCCCHHHHhHHHHHHHHHHHHHH-HHHHHHHccCccHHHHHHHH
Confidence 344555555555555555555556654433 79999999999999999999998 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhccccccCCC----------------C----
Q 041273 271 VLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMTGLFLLQNRAVSQKRQGAG----------------F---- 330 (362)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~----------------~---- 330 (362)
.+..++.++..+.++. + ...+...+.+.+.....+.....+.+..|++|.+.. .
T Consensus 76 ~~~~~~~~l~~~~~~~-----~-~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~ 149 (382)
T PRK10091 76 ALCVIGNAMFTLSSSY-----L-MLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTY 149 (382)
T ss_pred HHHHHHHHHHHHhCcH-----H-HHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHH
Confidence 8888877766555432 1 122223333334344456666777888775543210 0
Q ss_pred ---CCChhHHHHHHHHHHHHHHHhhcccccccc
Q 041273 331 ---LPGNQMIFFILNLVEALGVILTFKPFLIQR 360 (362)
Q Consensus 331 ---~~g~~~~f~~~~~~~~i~~~~~~~~~l~~~ 360 (362)
..|.+.+|.+.+++.++..+..+. ++||+
T Consensus 150 l~~~~gwr~~f~~~~~~~~~~~~~~~~-~lp~~ 181 (382)
T PRK10091 150 LSQEFSWRYTFLLIAVFNIAVLASIYF-WVPDI 181 (382)
T ss_pred HhhhccHHHHHHHHHHHHHHHHHHHHH-hCCCC
Confidence 115788888888877766654443 45543
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.7e-06 Score=81.98 Aligned_cols=98 Identities=17% Similarity=0.223 Sum_probs=79.1
Q ss_pred ccchhhhhhcc-cCCchHHHHHHHHHHHHHHHHhhhhh--------HHHHHHHHHHHhhhcCcchhH-HHHHHhhhccc-
Q 041273 3 TSVLWGMVADR-CGRKPVIIIGCITVVIFNTLFGLSVS--------FWMAIATRFLLGALNGLLGPI-KAYACEILRDQ- 71 (362)
Q Consensus 3 ~~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~~~~~~~~~--------~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~- 71 (362)
.+.++|.++|+ +||++.+..+.++..++..+.+++.. ....+++-.+..+|.|..-|+ .+...|-++++
T Consensus 39 ~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~ 118 (654)
T TIGR00926 39 TPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQ 118 (654)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccc
Confidence 46788999995 89999999999999999888876421 223455666677788888888 99999998754
Q ss_pred --cchhhHHHHHHhhhhhhhhhhhhhhhhcC
Q 041273 72 --HKTLGLSTLSTAWGTGLIIGPAVGGFLAQ 100 (362)
Q Consensus 72 --~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 100 (362)
+|-+.+.++..+.++|..+++.+..++.+
T Consensus 119 ~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~ 149 (654)
T TIGR00926 119 LSLRSRFFSFFYFAINAGSLISTIITPILRG 149 (654)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778889999999999999999988874
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=98.70 E-value=1e-07 Score=88.04 Aligned_cols=99 Identities=22% Similarity=0.328 Sum_probs=89.9
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTL 80 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~ 80 (362)
+|++..+++.+|+++++.+..+.+..+++.+..+++++.+..++.-++.|++....... .+.+.+..|++.|||+++++
T Consensus 269 ~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~ 348 (524)
T PF05977_consen 269 LGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIY 348 (524)
T ss_pred HHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHH
Confidence 45667778888899999999999999999999999999999999999999987776666 89999999999999999999
Q ss_pred HHhhhhhhhhhhhhhhhhcC
Q 041273 81 STAWGTGLIIGPAVGGFLAQ 100 (362)
Q Consensus 81 ~~~~~~g~~~g~~~~~~l~~ 100 (362)
+.....+..+|..+.|.+.+
T Consensus 349 ~~~~~g~~~lGsll~G~la~ 368 (524)
T PF05977_consen 349 QMVFFGGMPLGSLLWGFLAD 368 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.70 E-value=8.9e-07 Score=77.55 Aligned_cols=153 Identities=13% Similarity=0.130 Sum_probs=113.6
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHH
Q 041273 192 PFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGV 271 (362)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~ 271 (362)
..+.+.+..+......+....++|....+ +|.|..++|.+.+.++.+..+++ ++...+.+|+.||+.+...+.
T Consensus 14 ~l~aLa~~~F~igttEfv~~gLLp~iA~d------l~vs~~~aG~lis~yAl~~ai~a-p~l~~lt~r~~Rr~lLl~~l~ 86 (394)
T COG2814 14 ALLALALAAFAIGTTEFVPVGLLPPIAAD------LGVSEGAAGQLITAYALGVALGA-PLLALLTGRLERRRLLLGLLA 86 (394)
T ss_pred HHHHHHHHHHHHHhHHHHHHhchHHHHHH------cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHcccchHHHHHHHHH
Confidence 34445555555555566666666654433 89999999999999999999998 888899999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhccccccCCCCC--------------------
Q 041273 272 LSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMTGLFLLQNRAVSQKRQGAGFL-------------------- 331 (362)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-------------------- 331 (362)
+..++.++..+.++.. ...+.=...........+.......+.+|++|.+....
T Consensus 87 lFi~~n~l~alAp~f~------~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~i 160 (394)
T COG2814 87 LFIVSNLLSALAPSFA------VLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFL 160 (394)
T ss_pred HHHHHHHHHHHhccHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHH
Confidence 9999888877776544 23333333334555566788889999999766643321
Q ss_pred ---CChhHHHHHHHHHHHHHHHhhcccccc
Q 041273 332 ---PGNQMIFFILNLVEALGVILTFKPFLI 358 (362)
Q Consensus 332 ---~g~~~~f~~~~~~~~i~~~~~~~~~l~ 358 (362)
.|.+.+|++.+++.++..+..++ .+|
T Consensus 161 g~~~GWR~~F~~ia~l~ll~~~~~~~-~lP 189 (394)
T COG2814 161 GQLFGWRATFLAIAVLALLALLLLWK-LLP 189 (394)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHH-hCC
Confidence 17899999999999999887765 566
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.68 E-value=9.4e-07 Score=82.02 Aligned_cols=128 Identities=6% Similarity=-0.018 Sum_probs=85.5
Q ss_pred hcccccch-hHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh-hch
Q 041273 185 KSLMKNWP-FISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLAISGFSLLVFQLTLYPYVERM-IGP 262 (362)
Q Consensus 185 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~-~g~ 262 (362)
.+.+|+|+ ++......++..+..+....+++.|+.+. +|++..+.+.............. ++.+++.|| +||
T Consensus 14 ~~~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~-----lg~s~~~a~~~~~~~~~~~~~~~-~~~G~LaDr~~G~ 87 (500)
T PRK09584 14 LNAFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQ-----LGMSEADSITLFSSFSALVYGLV-AIGGWLGDKVLGT 87 (500)
T ss_pred hhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccch
Confidence 34456664 66666666666677777777888888665 79999888877766554544443 688999999 599
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhccc
Q 041273 263 IIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMTGLFLLQNRAVSQ 323 (362)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 323 (362)
|+.+..+..+..++..++.+.... .+ ...+...+.+.+.....+....+..+.+|+
T Consensus 88 r~~~~~g~~~~~ig~~l~~~~~~~----~~-~l~~~~~l~gig~g~~~~~~~~l~~~~f~~ 143 (500)
T PRK09584 88 KRVIMLGAIVLAIGYALVAWSGHD----AG-IVYMGMATIAVGNGLFKANPSSLLSTCYEK 143 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc----HH-HHHHHHHHHHHhhhcccCCHHHHHHHhcCC
Confidence 999999998888876666543211 11 122222333334444557777888998874
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.6e-08 Score=89.25 Aligned_cols=121 Identities=16% Similarity=0.083 Sum_probs=75.3
Q ss_pred cccchhhhhhccc--CCchHH-HHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchh
Q 041273 2 LTSVLWGMVADRC--GRKPVI-IIGCITVVIFNTLFGL--SVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTL 75 (362)
Q Consensus 2 i~~~~~G~l~Dr~--Grr~~l-~~~~~~~~~~~~~~~~--~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~ 75 (362)
++.++.|+++||+ +||+.. .....+..++.....+ ..+.+...+..+..|.......+. ..+..|.+|+++|++
T Consensus 304 ~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~ 383 (452)
T PRK11273 304 PGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGT 383 (452)
T ss_pred HHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhh
Confidence 4678899999999 555432 2222333333332222 234444444555555533222222 456789999999999
Q ss_pred hHHHHHHhhhhhhh-hhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHH
Q 041273 76 GLSTLSTAWGTGLI-IGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIAS 138 (362)
Q Consensus 76 ~~~~~~~~~~~g~~-~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (362)
++|+.+....+|.. .+|.+.+++.+ ..||+..| .+.+..+++.++..
T Consensus 384 ~~g~~~~~~~~g~~~~g~~v~g~l~~-------~~g~~~~f---------~~~~~~~~~~~~~~ 431 (452)
T PRK11273 384 AAGFTGLFGYLGGSVAASAIVGYTVD-------FFGWDGGF---------MVMIGGSILAVILL 431 (452)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHH-------HhcchHHH---------HHHHHHHHHHHHHH
Confidence 99999988888765 58999999998 67776666 45555555443333
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.68 E-value=6e-07 Score=79.37 Aligned_cols=140 Identities=14% Similarity=0.130 Sum_probs=96.6
Q ss_pred HHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHH
Q 041273 200 YCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTS 279 (362)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~ 279 (362)
.++...........+|.++.+. +|.|+.+.+++.+...++..+.+ +..+++.||+|||+.+..+..+..++.+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~-----~~~s~~~~~~~~~~~~~~~~~~~-~~~g~l~dr~g~r~~l~~~~~~~~~~~~~ 78 (352)
T PF07690_consen 5 FFLSGFGFSIISPALPLYLAEE-----LGLSPSQIGLLFSAFFLGSALFS-PFAGYLSDRFGRRRVLIIGLLLFALGSLL 78 (352)
T ss_dssp HHHHHHHHHHHHHHHH-HHHCC-----STTTSHCHHHHHHHHHHHHHHHH-HHHHHHHHHS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-----cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCeeeEeehhhhhhhHHHH
Confidence 3344444444444555333333 79999999999999999999998 89999999999999999998888887444
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhccccccCCC---------------------C--CCChhH
Q 041273 280 YTYIAMLSGFSLALLINCASVMKNVLSVSIMTGLFLLQNRAVSQKRQGAG---------------------F--LPGNQM 336 (362)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~---------------------~--~~g~~~ 336 (362)
..+. + ..+ ...+...+.+.+.....+....++.|..|+++.+.. . ..|.+.
T Consensus 79 ~~~~---~--~~~-~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~ 152 (352)
T PF07690_consen 79 LAFA---S--NFW-LLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRW 152 (352)
T ss_dssp HHHH---C--CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCC
T ss_pred hhhh---h--hHH-HHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcccccc
Confidence 4332 2 233 344555555666667778899999999986333111 1 114667
Q ss_pred HHHHHHHHHHHHHHh
Q 041273 337 IFFILNLVEALGVIL 351 (362)
Q Consensus 337 ~f~~~~~~~~i~~~~ 351 (362)
+|++.+++.+++.++
T Consensus 153 ~~~~~~~~~~~~~il 167 (352)
T PF07690_consen 153 AFLISAILSLIAAIL 167 (352)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred ccccccchhhhhhhh
Confidence 899999988888774
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.68 E-value=7.7e-07 Score=80.18 Aligned_cols=126 Identities=14% Similarity=0.102 Sum_probs=87.3
Q ss_pred ccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 041273 226 GLSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVL 305 (362)
Q Consensus 226 ~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (362)
++|+++.+.|...+...++..+++ +..+++.||+|||+.+..+..+..++.+...+..+. + ...+.-.+.+..
T Consensus 49 ~~g~s~~~~g~~~~~~~~~~~~~~-~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~-----~-~l~~~r~l~G~~ 121 (394)
T PRK10213 49 DLGISEGVAGQSVTVTAFVAMFAS-LFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSF-----S-LLLIGRACLGLA 121 (394)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChH-----H-HHHHHHHHHHHh
Confidence 379999999999999999999988 888999999999999999999988876665544321 1 222233343445
Q ss_pred HHHhhhHHHHHHhhhccccccCCCC-----------------------CCChhHHHHHHHHHHHHHHHhhccccccc
Q 041273 306 SVSIMTGLFLLQNRAVSQKRQGAGF-----------------------LPGNQMIFFILNLVEALGVILTFKPFLIQ 359 (362)
Q Consensus 306 ~~~~~~~~~~~~~~~~p~~~~~~~~-----------------------~~g~~~~f~~~~~~~~i~~~~~~~~~l~~ 359 (362)
.....+....++.|.+|+++.+... ..|.+..|++.+++.++..+.... .+||
T Consensus 122 ~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~-~~p~ 197 (394)
T PRK10213 122 LGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIK-SLPS 197 (394)
T ss_pred hHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHH-HCCC
Confidence 5556678888889998855432110 116788888888777665544432 3444
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.2e-06 Score=80.10 Aligned_cols=151 Identities=11% Similarity=0.010 Sum_probs=98.6
Q ss_pred chhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhh-chhHHHHHH
Q 041273 191 WPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLAISGFSLLVFQLTLYPYVERMI-GPIIITRIA 269 (362)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~-g~~~~~~~~ 269 (362)
+.++..........+..++...++|.|+.+. +|+++.+.+.+.........++. ++.|+++||+ |||+.+..+
T Consensus 9 ~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~-----lgls~~~a~~i~~~~~~~~~l~~-ligG~LaDRilGrrr~iliG 82 (493)
T PRK15462 9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQ-----LKYDDNHAYELFSAYCSLVYVTP-ILGGFLADKVLGNRMAVMLG 82 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHccCcHHHHHHH
Confidence 3455555555555666777777888888765 79999999999999888888887 8999999999 999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcccc---ccCCCCC---------------
Q 041273 270 GVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMTGLFLLQNRAVSQK---RQGAGFL--------------- 331 (362)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~~--------------- 331 (362)
.++..++.+++....... .... ....+...+.....+...+++.|.+|++ |..+...
T Consensus 83 ~il~~lg~lll~~~~~~~---~~~~--l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l 157 (493)
T PRK15462 83 ALLMAIGHVVLGASEIHP---SFLY--LSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIA 157 (493)
T ss_pred HHHHHHHHHHHHHhhcch---hHHH--HHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHH
Confidence 998888766554221111 1111 1111111122233466678899999853 3322110
Q ss_pred -------CChhHHHHHHHHHHHHHHHhh
Q 041273 332 -------PGNQMIFFILNLVEALGVILT 352 (362)
Q Consensus 332 -------~g~~~~f~~~~~~~~i~~~~~ 352 (362)
.|++..|.+.++..+++.+..
T Consensus 158 ~g~L~~~~Gw~~~F~iaaigm~l~li~~ 185 (493)
T PRK15462 158 CGYAQEEYSWAMGFGLAAVGMIAGLVIF 185 (493)
T ss_pred HHHHHhhhChHHHHHHHHHHHHHHHHHH
Confidence 157888888776666665543
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.3e-07 Score=86.22 Aligned_cols=99 Identities=19% Similarity=0.243 Sum_probs=72.4
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhh--hcCcchhH-HHHHHhhhccccchhhHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGA--LNGLLGPI-KAYACEILRDQHKTLGLS 78 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~--~~~~~~~~-~~~i~~~~~~~~r~~~~~ 78 (362)
+++++.|+++||+|||+.+..+.++.++........++.......-.+.|. ......+. ..++.|.+|+++|++++|
T Consensus 281 ~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g 360 (426)
T PRK12307 281 LGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTG 360 (426)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhh
Confidence 467889999999999999988887776665544433221112222233333 22223344 778899999999999999
Q ss_pred HHHHhhhhhhhhhhhhhhhhcC
Q 041273 79 TLSTAWGTGLIIGPAVGGFLAQ 100 (362)
Q Consensus 79 ~~~~~~~~g~~~g~~~~~~l~~ 100 (362)
+......+|..++|.+.+++.+
T Consensus 361 ~~~~~~~~~~~~gp~~~g~l~~ 382 (426)
T PRK12307 361 LIYNLAATSGTFNSMAATWLGI 382 (426)
T ss_pred HHHHHHhHHHHHHHHHHHHHHH
Confidence 9999999999999999999987
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.4e-07 Score=83.88 Aligned_cols=98 Identities=13% Similarity=0.000 Sum_probs=78.7
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchh
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLS-----VSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTL 75 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~ 75 (362)
++.++.|+++||+|+|+.+..+.+..+++..+.... ++.+.+.+..++.|++.+...+. ..... ..++++|++
T Consensus 266 ~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~-~~~~~~~g~ 344 (406)
T PRK15402 266 AGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLTL-FSSDVSKGT 344 (406)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHHh-hhccccccH
Confidence 456788999999999999999888777777766543 35666777888899988776555 55443 345589999
Q ss_pred hHHHHHHhhhhhhhhhhhhhhhhcC
Q 041273 76 GLSTLSTAWGTGLIIGPAVGGFLAQ 100 (362)
Q Consensus 76 ~~~~~~~~~~~g~~~g~~~~~~l~~ 100 (362)
+.+..+.....|..+|+.+++.+.+
T Consensus 345 ~~~~~~~~~~~~~~~g~~~~~~l~~ 369 (406)
T PRK15402 345 VSAAMGMLSMLIFTVGIELSKHAYL 369 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999877
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.8e-08 Score=83.59 Aligned_cols=122 Identities=21% Similarity=0.334 Sum_probs=92.5
Q ss_pred ccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHH----HHHHHHHHHhhhcCcchhHHHHHHhhhccccchhhHH
Q 041273 3 TSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFW----MAIATRFLLGALNGLLGPIKAYACEILRDQHKTLGLS 78 (362)
Q Consensus 3 ~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~----~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~ 78 (362)
|.++.+++.||+|||+.+..+.+++++..++...+.+-. ++..+|+. -.+++..++.|..|++|..-|+...|
T Consensus 397 GlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~araf---isg~fqvaYvYtPEVyPTavRatgvG 473 (528)
T KOG0253|consen 397 GLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAF---ISGAFQVAYVYTPEVYPTAVRATGVG 473 (528)
T ss_pred chhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHH---HhchheEEEEecCcccchhhhhcchh
Confidence 568899999999999999999999999998887665322 23344544 24445566889999999999999999
Q ss_pred HHHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHhhccccc
Q 041273 79 TLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETL 145 (362)
Q Consensus 79 ~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 145 (362)
.-+...-+|.++.|.++ ...+ -.-.++..+...++++..+...++|-.+
T Consensus 474 tcSsmaRIggI~~p~iA-~~~e-----------------~s~sl~i~vy~~~~ilagIavcffPiEt 522 (528)
T KOG0253|consen 474 TCSSMARIGGIFSPVIA-MRAE-----------------LSTSLPIFVYGALFILAGIAVCFFPIET 522 (528)
T ss_pred hhhhHHhhhhhhhhHHH-HHhc-----------------cceeehHHHHHHHHHHHHHHheeeeecc
Confidence 99999999999999998 3322 1223455666777777777777777543
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.3e-07 Score=86.34 Aligned_cols=99 Identities=22% Similarity=0.258 Sum_probs=68.8
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHH-HHh---hhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhh
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNT-LFG---LSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLG 76 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~-~~~---~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~ 76 (362)
+++++.|+++||+|||+.+..+.....+... ... ..+++..+....++.|++.+...+. ..++.|.+|+++|+.+
T Consensus 289 ~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~ 368 (434)
T PRK15075 289 IWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAG 368 (434)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchh
Confidence 4567899999999999988876544433221 111 1234444444455566666665555 7889999999999999
Q ss_pred HHHHHH-hhhhhhhhhhhhhhhhcC
Q 041273 77 LSTLST-AWGTGLIIGPAVGGFLAQ 100 (362)
Q Consensus 77 ~~~~~~-~~~~g~~~g~~~~~~l~~ 100 (362)
+++... +..++..++|.+.+++.+
T Consensus 369 ~g~~~~~~~~~~g~~~p~~~g~i~~ 393 (434)
T PRK15075 369 FSLAYSLATAIFGGFTPAISTWLIH 393 (434)
T ss_pred eeHHHHHHHHHHhhhHHHHHHHHHH
Confidence 998544 444557789999999988
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.6e-08 Score=83.91 Aligned_cols=100 Identities=17% Similarity=0.242 Sum_probs=90.4
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTL 80 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~ 80 (362)
+|+++.|+|.||+|.|+++..+.++..+.++...+...-..+.+.-.+.|...|..+.. .++.++.+|++|-++.+|++
T Consensus 303 lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFgly 382 (438)
T COG2270 303 LGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLY 382 (438)
T ss_pred HHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehh
Confidence 57899999999999999999999999998888877777666777778889988887666 99999999999999999999
Q ss_pred HHhhhhhhhhhhhhhhhhcCc
Q 041273 81 STAWGTGLIIGPAVGGFLAQP 101 (362)
Q Consensus 81 ~~~~~~g~~~g~~~~~~l~~~ 101 (362)
+...-.+..+||.+.+.+.+.
T Consensus 383 altgra~S~~gp~lv~v~t~i 403 (438)
T COG2270 383 ALTGRAASFLGPFLVAVITQI 403 (438)
T ss_pred hhhhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999883
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.4e-06 Score=80.33 Aligned_cols=154 Identities=12% Similarity=0.076 Sum_probs=102.4
Q ss_pred cccchh-HHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh-hchhHH
Q 041273 188 MKNWPF-ISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLAISGFSLLVFQLTLYPYVERM-IGPIII 265 (362)
Q Consensus 188 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~-~g~~~~ 265 (362)
+++|+- +.+....++..+..+.....+|.|+.+. +++|++..+.|.+.+...+...+++ ++.+++.|| +|||+.
T Consensus 6 ~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~---~~lg~s~~~ag~~~~~~~~~~~~~~-~~~G~laDr~~G~~~~ 81 (475)
T TIGR00924 6 FGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQ---AGLGFSQEQAFIIFGAYSALVYLLT-SVGWWFGDRVWGTKKT 81 (475)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCCCCHHHHHHHHHHHHHHHHHHH-hhHHHHHHhhcchHHH
Confidence 344443 4444445555566677777888887542 2378999999999999999999998 999999999 899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcccc---ccCCCCCC----------
Q 041273 266 TRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMTGLFLLQNRAVSQK---RQGAGFLP---------- 332 (362)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~~~---------- 332 (362)
+..+..+..++.+++.+.... + ...+...+.+.+.....|....++.+.+|++ |....+..
T Consensus 82 l~~~~~~~~~g~~~~~~~~~~-----~-~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ 155 (475)
T TIGR00924 82 MVLGGIVLMLGHFMLAMSIYP-----D-LIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSF 155 (475)
T ss_pred HHHHHHHHHHHHHHHHhcccH-----h-HHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHH
Confidence 999999988887776654321 1 1222222333344445677788888888743 22221110
Q ss_pred -------------ChhHHHHHHHHHHHHHHHh
Q 041273 333 -------------GNQMIFFILNLVEALGVIL 351 (362)
Q Consensus 333 -------------g~~~~f~~~~~~~~i~~~~ 351 (362)
|++..|.+.++..+++.+.
T Consensus 156 ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~ 187 (475)
T TIGR00924 156 ISPLLAGVIAENYGYHVGFNLAAVGMVIGLLT 187 (475)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 5678888877666655443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.1e-07 Score=85.61 Aligned_cols=106 Identities=13% Similarity=0.146 Sum_probs=77.8
Q ss_pred ccchhhhhhcccCCchHHHHHHHHHHHHHHHHhh------hhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhcc-ccch
Q 041273 3 TSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGL------SVSFWMAIATRFLLGALNGLLGPI-KAYACEILRD-QHKT 74 (362)
Q Consensus 3 ~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~------~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~-~~r~ 74 (362)
+.++.|++.||+|+|+.+..+....++....... .++.+.+.....+.+++.+...+. .+.+.+..++ ++++
T Consensus 260 g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g 339 (390)
T TIGR02718 260 GCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAG 339 (390)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchH
Confidence 5678899999999999998877665333322221 123344445555666666766565 7777777765 8899
Q ss_pred hhHHHHHHhhhhhhhhhhhhhhhhcCccccCCccccccccc
Q 041273 75 LGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMF 115 (362)
Q Consensus 75 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~ 115 (362)
+.++..+...++|..+||.++|.+.+ ..|++..|
T Consensus 340 ~~~~~~~~~~~lg~~~g~~~~G~l~~-------~~G~~~~f 373 (390)
T TIGR02718 340 TDVTAVQSTRDLGELIASSIAGYLTD-------RFGYAGGF 373 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHccHHHH
Confidence 99999999999999999999999998 56665554
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.2e-06 Score=79.28 Aligned_cols=58 Identities=14% Similarity=0.126 Sum_probs=47.8
Q ss_pred ccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHH
Q 041273 226 GLSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIA 284 (362)
Q Consensus 226 ~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 284 (362)
++|+|..+.+...+...++..+++ ++.+++.||+|+|+.+..+.+...++.++.++..
T Consensus 65 ~~gls~~~~g~~~~~~~~~~~~~~-~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~ 122 (476)
T PLN00028 65 NLNLTKSDIGNAGIASVSGSIFSR-LAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVS 122 (476)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhc
Confidence 379999999998888888888887 8999999999999998888877777666555543
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.6e-07 Score=84.82 Aligned_cols=123 Identities=13% Similarity=0.155 Sum_probs=79.7
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHH---hhh-hhHHHHHHHHHH----HhhhcCcchhH-HHHHHhhhcccc
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLF---GLS-VSFWMAIATRFL----LGALNGLLGPI-KAYACEILRDQH 72 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~---~~~-~~~~~l~~~r~l----~G~~~~~~~~~-~~~i~~~~~~~~ 72 (362)
++.++.|++.||+|||+.+..+.....+..+.. ++. ++.+.+.+.-++ .|++.+...+. ..++.+..|.++
T Consensus 261 ~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 340 (402)
T PRK11902 261 VGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ 340 (402)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH
Confidence 467889999999999998877776666554433 343 355655555444 34444444444 666666666554
Q ss_pred chhhHHHHHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHhhcccc
Q 041273 73 KTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPET 144 (362)
Q Consensus 73 r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 144 (362)
.+..+...++|...++.++|.+.+ .+||+..| ...++++++.+...+..+.+
T Consensus 341 ----~~~~~~~~~l~~~~~~~~~G~l~~-------~~G~~~~f---------~~~~~~~~~~~~~~~~~~~~ 392 (402)
T PRK11902 341 ----YALLSALASVGRVYVGPTSGYLVE-------AYGWPGFY---------LMTVVIALPGLALLWLMRGT 392 (402)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHH-------HhChHHHH---------HHHHHHHHHHHHHHHHHhhh
Confidence 455555667777767778999998 78887766 56666665555555555544
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.5e-05 Score=70.23 Aligned_cols=90 Identities=18% Similarity=0.094 Sum_probs=68.4
Q ss_pred chhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHHHHh
Q 041273 5 VLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTLSTA 83 (362)
Q Consensus 5 ~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~~~~ 83 (362)
+.+.++.+|+..+.=+..+..++.++.++.++++|.+.=+++-.+.+++.|..-.. .++ +..+++ ...+-++.+
T Consensus 77 l~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~l-t~~y~~----~~l~~wssG 151 (402)
T PF02487_consen 77 LIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSL-THFYGK----SSLSAWSSG 151 (402)
T ss_pred HHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHH-HHhcCc----cccccccCC
Confidence 45667788888766666677788889999999999998888888888888876665 554 445654 357888888
Q ss_pred hhhhhhhhhhhhhhhc
Q 041273 84 WGTGLIIGPAVGGFLA 99 (362)
Q Consensus 84 ~~~g~~~g~~~~~~l~ 99 (362)
.+.+.++|+..-..+.
T Consensus 152 TG~aGl~Ga~~y~~lT 167 (402)
T PF02487_consen 152 TGGAGLVGALYYLGLT 167 (402)
T ss_pred cChhhHHHHHHHHHHH
Confidence 8888888887766555
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.8e-07 Score=80.22 Aligned_cols=121 Identities=12% Similarity=-0.021 Sum_probs=85.2
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 041273 227 LSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLS 306 (362)
Q Consensus 227 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (362)
+|.|+.+.+.+.+...++..+++ ++.+++.||+|||+.+..+..+..++.+...+.++. + ...+...+.+...
T Consensus 35 ~g~s~~~~g~~~~~~~~~~~~~~-~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~l~g~~~ 107 (385)
T TIGR00710 35 LSTPASIVQMTLTLYLLGFAAGQ-LLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNI-----E-TLLVLRFVQAFGA 107 (385)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHH-HhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccH-----H-HHHHHHHHHHcch
Confidence 79999999999999999999998 899999999999999999888887777666554321 1 2223333444455
Q ss_pred HHhhhHHHHHHhhhccccccCCCC-----------------------CCChhHHHHHHHHHHHHHHHhhcc
Q 041273 307 VSIMTGLFLLQNRAVSQKRQGAGF-----------------------LPGNQMIFFILNLVEALGVILTFK 354 (362)
Q Consensus 307 ~~~~~~~~~~~~~~~p~~~~~~~~-----------------------~~g~~~~f~~~~~~~~i~~~~~~~ 354 (362)
....+....++.|..|+++.+... ..|.+.+|++.+++.++..+..+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (385)
T TIGR00710 108 SAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFF 178 (385)
T ss_pred hHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 555677788888988844331110 015677888877777776665543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.8e-06 Score=74.57 Aligned_cols=97 Identities=29% Similarity=0.473 Sum_probs=70.5
Q ss_pred cccchhhhhhc----ccCCchH-HHHHHHHHHHHHHHHhhhhhHHHHH------------HHHHHHhh-----hc-Ccch
Q 041273 2 LTSVLWGMVAD----RCGRKPV-IIIGCITVVIFNTLFGLSVSFWMAI------------ATRFLLGA-----LN-GLLG 58 (362)
Q Consensus 2 i~~~~~G~l~D----r~Grr~~-l~~~~~~~~~~~~~~~~~~~~~~l~------------~~r~l~G~-----~~-~~~~ 58 (362)
+.+|+.|..+| ||||||. +..+.+..+++.++..++.++..++ +.-++.|+ .. -...
T Consensus 82 ~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qg 161 (498)
T KOG0637|consen 82 LVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQG 161 (498)
T ss_pred eecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhh
Confidence 46889999999 5898765 5556677777778888776543322 23333443 33 2357
Q ss_pred hHHHHHHhhhccccchh-hHHHHHHhhhhhhhhhhhhhhhh
Q 041273 59 PIKAYACEILRDQHKTL-GLSTLSTAWGTGLIIGPAVGGFL 98 (362)
Q Consensus 59 ~~~~~i~~~~~~~~r~~-~~~~~~~~~~~g~~~g~~~~~~l 98 (362)
|+.+++.|...++++.+ +++++....++|+.+|..++++.
T Consensus 162 p~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 162 PCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred hHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccccc
Confidence 78999999998766666 99999999999999999888743
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.7e-06 Score=78.40 Aligned_cols=126 Identities=13% Similarity=0.070 Sum_probs=88.2
Q ss_pred ccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 041273 226 GLSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVL 305 (362)
Q Consensus 226 ~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (362)
++|++..+.|+..+...++..+++ +..+++.||+|||+.+..+.++..++.....+..+.. ...+.-.+.+.+
T Consensus 37 ~~~~s~~~~g~~~s~~~~~~~~~~-~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~------~l~~~r~l~G~~ 109 (412)
T TIGR02332 37 DLGLSATMFGLAATLFYAAYVICG-IPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPE------SLYLLRILVGIA 109 (412)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHH-hhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHHH
Confidence 489999999999999999999998 8889999999999999988888888777766544321 222333344445
Q ss_pred HHHhhhHHHHHHhhhccccccCC---------------------CC--------CCChhHHHHHHHHHHHHHHHhhcccc
Q 041273 306 SVSIMTGLFLLQNRAVSQKRQGA---------------------GF--------LPGNQMIFFILNLVEALGVILTFKPF 356 (362)
Q Consensus 306 ~~~~~~~~~~~~~~~~p~~~~~~---------------------~~--------~~g~~~~f~~~~~~~~i~~~~~~~~~ 356 (362)
.....|....++.|.+|.++.+. .. ..|.+..|.+.++..++..++.++ +
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~-~ 188 (412)
T TIGR02332 110 EAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWF-W 188 (412)
T ss_pred HhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhh-c
Confidence 55566777788899888432210 00 126788888887777665554443 4
Q ss_pred ccc
Q 041273 357 LIQ 359 (362)
Q Consensus 357 l~~ 359 (362)
++|
T Consensus 189 ~~~ 191 (412)
T TIGR02332 189 LDD 191 (412)
T ss_pred cCC
Confidence 444
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.2e-07 Score=83.81 Aligned_cols=98 Identities=17% Similarity=0.110 Sum_probs=60.3
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHh--h--hhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhh
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFG--L--SVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLG 76 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~--~--~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~ 76 (362)
+++++.|+++||+|||+.+.++..+.++...... . .++....+..-.+.+...+...+. ..+.+|.+|+|.|+.+
T Consensus 294 i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~ 373 (432)
T PRK10406 294 LIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALG 373 (432)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchh
Confidence 4567889999999999988776655433332221 1 122222222222222333333344 7889999999999999
Q ss_pred HHHHHHhhhh-hhhhhhhhhhhhc
Q 041273 77 LSTLSTAWGT-GLIIGPAVGGFLA 99 (362)
Q Consensus 77 ~~~~~~~~~~-g~~~g~~~~~~l~ 99 (362)
+|+.+...+. .....|.+.+.+.
T Consensus 374 ~g~~~~~g~~~~g~~~p~~~~~l~ 397 (432)
T PRK10406 374 VGLSYAVANALFGGSAEYVALSLK 397 (432)
T ss_pred hhHHHHHHHHHHHhHHHHHHHHHH
Confidence 9998765553 3445777777553
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=98.58 E-value=8.3e-07 Score=79.89 Aligned_cols=93 Identities=8% Similarity=0.002 Sum_probs=68.2
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 041273 227 LSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLS 306 (362)
Q Consensus 227 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (362)
+|.++.+.+.+.+...++..+++ ++.+++.||+|||+.+..+..+..++.++..+..+ .+ ...+...+.+.+.
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~g~~~ 119 (398)
T TIGR00895 47 WGLDPVQLGFLFSAGLIGMAFGA-LFFGPLADRIGRKRVLLWSILLFSVFTLLCALATN-----VT-QLLILRFLAGLGL 119 (398)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHH-HHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccc-----hH-HHHHHHHHHhccc
Confidence 78999999999999999999987 89999999999999999888877776665554332 11 1223333334444
Q ss_pred HHhhhHHHHHHhhhcccccc
Q 041273 307 VSIMTGLFLLQNRAVSQKRQ 326 (362)
Q Consensus 307 ~~~~~~~~~~~~~~~p~~~~ 326 (362)
....+....++.|..|+++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~r 139 (398)
T TIGR00895 120 GGLMPNLNALVSEYAPKRFR 139 (398)
T ss_pred ccchhhHHHHHHHHcCHHhh
Confidence 55567888899998885433
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.56 E-value=7.2e-07 Score=80.49 Aligned_cols=129 Identities=19% Similarity=0.283 Sum_probs=90.6
Q ss_pred ccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhh----hH--H---HHHHHHHHHhhhcCc-chhH-HHHHHhhhccc
Q 041273 3 TSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSV----SF--W---MAIATRFLLGALNGL-LGPI-KAYACEILRDQ 71 (362)
Q Consensus 3 ~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~----~~--~---~l~~~r~l~G~~~~~-~~~~-~~~i~~~~~~~ 71 (362)
.++.+..+.||+|||+.++.+..+..+..+++.... .. | ..+++.++..+..+. ..|. .-+.+|.+|++
T Consensus 321 ~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~ 400 (485)
T KOG0569|consen 321 STLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQS 400 (485)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCcc
Confidence 467889999999999999999999998888776432 11 1 123444444444333 3566 89999999999
Q ss_pred cchhhHHHHHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHH-HHHHHHhhcccccCCC
Q 041273 72 HKTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAF-AVTIASCWIPETLHKH 148 (362)
Q Consensus 72 ~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~~~~~ 148 (362)
.|+.++++......+...+-...-..+.+ .+|- ..| +...+.+. ..+..++.+||++.+.
T Consensus 401 ~R~aa~s~~~~~~w~~~fiv~~~fp~l~~-------~~g~-~~f---------ilF~i~~~~~~i~~~~~lPETkgr~ 461 (485)
T KOG0569|consen 401 ARSAAQSVATAVNWLSNFIVGFAFPPLQN-------VIGP-YVF---------ILFVIPLAIFLIYLYRYLPETKGRT 461 (485)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH-------Hhcc-hhh---------HHHHHHHHHHHHHHHHhCcccCCCC
Confidence 99999999999988888877766666665 3332 122 33344443 4677778999987543
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.8e-05 Score=71.77 Aligned_cols=244 Identities=9% Similarity=0.084 Sum_probs=135.7
Q ss_pred cchhhhhhcccCCchHHHHHHHHHHHHHHHHhhh----hh---------------------------HHHHHHHHHHHhh
Q 041273 4 SVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLS----VS---------------------------FWMAIATRFLLGA 52 (362)
Q Consensus 4 ~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~----~~---------------------------~~~l~~~r~l~G~ 52 (362)
.++.+++++|++|++++-.....+.....++++. ++ .|...+.-+...+
T Consensus 61 ~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~el 140 (472)
T TIGR00769 61 MLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAEL 140 (472)
T ss_pred HHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHH
Confidence 5778999999999999988877777776666654 11 2222333344455
Q ss_pred hcCcc-hhH-HHHHHhhhccccchhhHHHHHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchh--hHHHHH
Q 041273 53 LNGLL-GPI-KAYACEILRDQHKTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFL--PCLCMS 128 (362)
Q Consensus 53 ~~~~~-~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~--~~~~~~ 128 (362)
-.... +.. .+++.|.++.+|-.|.+++...+.++|.++++.+..++.+..+..+...+ .|.... ...+.+
T Consensus 141 w~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~i~~ 214 (472)
T TIGR00769 141 WGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVD------GWHVSLKNLMVIVI 214 (472)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccC------hHHHHHHHHHHHHH
Confidence 44443 335 89999999999999999999999999999999998888742111110110 111111 112223
Q ss_pred HHHHHHHHHHhhcccccCCCCcCCccccccchhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHh
Q 041273 129 LFAFAVTIASCWIPETLHKHNEDGVSLDVSCDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDI 208 (362)
Q Consensus 129 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (362)
+...+.+...+++.+.....++ ..+.+ + .+.+++++....++.+.++|+|.++...+...+++....
T Consensus 215 ~~~~~~~~~~~~l~~~~~~~~~-~~~~~-------~-----~~~k~k~k~~~~es~k~i~~S~yL~~ia~~vi~y~~~~n 281 (472)
T TIGR00769 215 CSGLAIILLYWWVNRNVLTDPR-SYNPA-------L-----KEKKVKPKMSTMESLKFLVSSPYILDLALLVIAYGISIN 281 (472)
T ss_pred HHHHHHHHHHHHHHhcccCCcc-ccchh-------h-----ccccCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 3333344444444332211110 00000 0 001111122345677888999988877766666544433
Q ss_pred HHHHHHHhHhcccccccccCCCchh----hHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHH
Q 041273 209 AYTEIFSLWAISPWKYGGLSYSTEN----AGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLS 273 (362)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~g~s~~~----~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~ 273 (362)
......-....+. + -++.+ .|......++..++.+ ++.+++.+|+|-+....+.-++.
T Consensus 282 lve~~~k~~v~~~-----~-p~~~~~~~f~g~~~~~~gi~tl~~~-l~~~~l~~~~Gw~~~a~i~Pii~ 343 (472)
T TIGR00769 282 LVEVTWKSKLKAQ-----Y-PSPNEYSAFMGDFSTWTGVVSVTMM-LLSGNVIRKYGWLTAALITPLVM 343 (472)
T ss_pred HHHHHHHHHHHHH-----C-CCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHH
Confidence 3332222222111 1 12222 3444555566666666 44599999998776655444433
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.4e-06 Score=77.18 Aligned_cols=146 Identities=14% Similarity=-0.002 Sum_probs=90.0
Q ss_pred HHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHH
Q 041273 198 IVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLL 277 (362)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~ 277 (362)
...+..+....+...+.|.+- ...+++|.++.+.+...+...++..+++ +..+++.||+|||+.+..+..+..++.
T Consensus 10 ~~~~~~~~~~~~~~~~~p~~~---~i~~~~~~s~~~~g~~~s~~~~~~~~~~-~~~g~l~dr~g~r~~~~~~~~~~~~~~ 85 (401)
T PRK11043 10 YLAGLSMLGFLATDMYLPAFK---AIQADLQTSASAVSASLSLFLAGFALGQ-LLWGPLSDRYGRKPVLLAGLSLFALGS 85 (401)
T ss_pred HHHHHHHHHHHHHHHHHhhHH---HHHHHHCCCHHHHHHHHHHHHHHHHHHH-HhhhhHHhhcCCcHHHHHHHHHHHHHH
Confidence 333334444444555555441 1122379999999999999999999998 999999999999999988887777666
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhccccccCCCC-----------------------CCCh
Q 041273 278 TSYTYIAMLSGFSLALLINCASVMKNVLSVSIMTGLFLLQNRAVSQKRQGAGF-----------------------LPGN 334 (362)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-----------------------~~g~ 334 (362)
+...+..+. +. ..+...+.+.+.....+....+..|.+|+++..... ..|.
T Consensus 86 ~~~~~~~~~-----~~-l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~ 159 (401)
T PRK11043 86 LGMLWVESA-----AQ-LLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGW 159 (401)
T ss_pred HHHHHhcCH-----HH-HHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 655443321 11 112222222233333445566777777755432110 1156
Q ss_pred hHHHHHHHHHHHHHHHhhc
Q 041273 335 QMIFFILNLVEALGVILTF 353 (362)
Q Consensus 335 ~~~f~~~~~~~~i~~~~~~ 353 (362)
+..|++.+++.++..+..+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~ 178 (401)
T PRK11043 160 QAIFATLFAITLLLILPTL 178 (401)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7788888777777665544
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.4e-07 Score=86.52 Aligned_cols=99 Identities=19% Similarity=0.174 Sum_probs=83.5
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccc-------
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSV--SFWMAIATRFLLGALNGLLGPI-KAYACEILRDQ------- 71 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~------- 71 (362)
+++++.++++||+|+|+.+.++..+.+++.+...+.+ +++.+.+..++.|+|.+...+. .++.+|..|++
T Consensus 279 ~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r 358 (448)
T PRK09848 279 ASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVR 358 (448)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCcc
Confidence 3567899999999999999999988888877776643 6777777788889998887777 88999988754
Q ss_pred cchhhHHHHHHhhhhhhhhhhhhhhhhcC
Q 041273 72 HKTLGLSTLSTAWGTGLIIGPAVGGFLAQ 100 (362)
Q Consensus 72 ~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 100 (362)
++|..++..+....+|..+|+.+.+.+.+
T Consensus 359 ~~G~~~~~~~~~~klg~aig~~i~g~~l~ 387 (448)
T PRK09848 359 IEGLTYSLFSFTRKCGQAIGGSIPAFILG 387 (448)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35889999999999999999999998876
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.6e-06 Score=76.75 Aligned_cols=120 Identities=10% Similarity=0.065 Sum_probs=80.9
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 041273 227 LSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLS 306 (362)
Q Consensus 227 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (362)
+|.|+.+.+...+...++..+++ ++.+++.||+|||+.+..+.....++.......++. +. ..+...+.+...
T Consensus 33 ~~~s~~~~~~~~~~~~~~~~~~~-~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~-----~~-~~~~~~l~g~~~ 105 (392)
T PRK10473 33 LNASEAQLHIAFSVYLAGMAAAM-LFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETS-----SL-FLAGRFLQGIGA 105 (392)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHH-HhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcH-----HH-HHHHHHHHHhhh
Confidence 78999999999999998888887 899999999999999998888777776665543321 11 122223333344
Q ss_pred HHhhhHHHHHHhhhccccccCCC-----------------------CCCChhHHHHHHHHHHHHHHHhhc
Q 041273 307 VSIMTGLFLLQNRAVSQKRQGAG-----------------------FLPGNQMIFFILNLVEALGVILTF 353 (362)
Q Consensus 307 ~~~~~~~~~~~~~~~p~~~~~~~-----------------------~~~g~~~~f~~~~~~~~i~~~~~~ 353 (362)
....+....++.|..|+++.+.. ...|++..|++.+++.++..++.+
T Consensus 106 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~ 175 (392)
T PRK10473 106 GCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSL 175 (392)
T ss_pred hHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHH
Confidence 44556677788888773332110 011567778888777777666544
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.4e-06 Score=77.90 Aligned_cols=140 Identities=10% Similarity=0.113 Sum_probs=92.6
Q ss_pred HHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH
Q 041273 202 VFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYT 281 (362)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 281 (362)
+.......+....|.+. +. +|+|+.+.|.+.+...++..+++ ++.+++.||+|||+.+..+..+..++.++..
T Consensus 6 ~~~~~~~~~~~~~~~~~-~~-----~g~s~~~~g~~~~~~~~~~~~~~-~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 78 (379)
T TIGR00881 6 AYYLVRKNFALAMPYLV-EE-----IGLSKTDLGLLLSSFSIAYGISK-FVMGSVSDRSNPRVFLPIGLILCAIVNLFFG 78 (379)
T ss_pred HHHHhHHhhhhhhHHHH-HH-----hCCCHhHHHHHHHHHHHHHHhhh-hhhhHHHHhhCCeehhHHHHHHHHHHHHHHH
Confidence 33334444444555433 22 79999999999999999999998 8999999999999999999888888777766
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhccccccCCCC------------------------CCChhHH
Q 041273 282 YIAMLSGFSLALLINCASVMKNVLSVSIMTGLFLLQNRAVSQKRQGAGF------------------------LPGNQMI 337 (362)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~------------------------~~g~~~~ 337 (362)
+..+. + ...+...+.+.+.....+....++.|..|+++.+... ..|.+..
T Consensus 79 ~~~~~-----~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 152 (379)
T TIGR00881 79 FSTSL-----W-VMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWV 152 (379)
T ss_pred HhhhH-----H-HHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhH
Confidence 55422 1 2223333334444555678888999988854332110 0145667
Q ss_pred HHHHHHHHHHHHHhhcc
Q 041273 338 FFILNLVEALGVILTFK 354 (362)
Q Consensus 338 f~~~~~~~~i~~~~~~~ 354 (362)
|++.+++.++..++.+.
T Consensus 153 ~~~~~~~~~~~~~~~~~ 169 (379)
T TIGR00881 153 FIVPGIIAIIVSLICFL 169 (379)
T ss_pred HHHHHHHHHHHHHHHhe
Confidence 77777766665554443
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.3e-06 Score=78.02 Aligned_cols=123 Identities=14% Similarity=0.032 Sum_probs=87.1
Q ss_pred chhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh-hchhHHHHHH
Q 041273 191 WPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLAISGFSLLVFQLTLYPYVERM-IGPIIITRIA 269 (362)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~-~g~~~~~~~~ 269 (362)
|.++..+...+.-.+..+.....++.|+.+. +|++..+.+.+...+.....+.. +++|+++|| +|||+.+..+
T Consensus 14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~-----lg~~~~~a~~i~~~~~~~~~~~~-~~~G~laDr~~G~r~~~~~g 87 (489)
T PRK10207 14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQ-----LGFSQEQAFITFGAFAALVYGLI-SIGGYVGDHLLGTKRTIVLG 87 (489)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHH-hhHHHhhhhccchHHHHHHH
Confidence 3455555555555666677777778787665 78999998888888777777765 789999999 9999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcccc
Q 041273 270 GVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMTGLFLLQNRAVSQK 324 (362)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 324 (362)
.++..++.+...+....+ . .+.+...+...+.....|....++.|.+|++
T Consensus 88 ~~~~~~g~~~~~~~~~~~--~---ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~ 137 (489)
T PRK10207 88 AIVLAIGYFMTGMSLLKP--D---LIFIALGTIAVGNGLFKANPASLLSKCYPPK 137 (489)
T ss_pred HHHHHHHHHHHHHhccch--h---HHHHHHHHHHhccccccCCHHHHHHHhcCCC
Confidence 999988877766543211 1 1222333334455556677889999999854
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.2e-06 Score=80.20 Aligned_cols=124 Identities=10% Similarity=0.085 Sum_probs=80.3
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 041273 227 LSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLS 306 (362)
Q Consensus 227 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (362)
.|.|+.+.+...+...++..+++ +..+++.||+|+|+.+..+..+..++.+.......... ..+ ...+...+.+.+.
T Consensus 56 ~g~s~~~~g~~~~~~~~~~~~~~-~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~l~~~~~l~g~~~ 132 (438)
T TIGR00712 56 QGFSKGELGFALSAISIAYGFSK-FIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATS-SIA-IMFVLLFLNGWFQ 132 (438)
T ss_pred cCCCHhHhHHHHHHHHHHHHHhh-hccchhhhccCCceehHHHHHHHHHHHHHHhccccccc-hHH-HHHHHHHHHHHHh
Confidence 48899999999999999999998 99999999999999988888777777665544322111 111 1222222323333
Q ss_pred HHhhhHHHHHHhhhccccccCCCC------------------------CCChhHHHHHHHHHHHHHHHhhc
Q 041273 307 VSIMTGLFLLQNRAVSQKRQGAGF------------------------LPGNQMIFFILNLVEALGVILTF 353 (362)
Q Consensus 307 ~~~~~~~~~~~~~~~p~~~~~~~~------------------------~~g~~~~f~~~~~~~~i~~~~~~ 353 (362)
....+.....+.|.+|+++.+... ..|.+..|++.+++.++..+..+
T Consensus 133 g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~ 203 (438)
T TIGR00712 133 GMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAF 203 (438)
T ss_pred hcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 334566677778888754432110 01457778887777776554444
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=98.50 E-value=2e-06 Score=79.76 Aligned_cols=140 Identities=14% Similarity=0.042 Sum_probs=92.7
Q ss_pred HHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHH
Q 041273 201 CVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSY 280 (362)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~ 280 (362)
++............|.+..+ +|.++.+.++..+...++..++. ++.+++.||+|||+.+..+..+..++.+..
T Consensus 12 ~~~~~~~~~~~~~~p~~~~~------~g~s~~~~~~~~~~~~~~~~~~~-~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 84 (485)
T TIGR00711 12 FMAVLDSTIVNVAIPTIAGD------LGSSLSQVQWVITSYMLANAISI-PLTGWLAKRFGTRRLFLISTFAFTLGSLLC 84 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHh------cCCChhhhhHHHHHHHHHHHHHH-HhHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 33333333444445544433 78899999999999999999997 999999999999999999988888776665
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhccccccCCC----------------CC-------CChhHH
Q 041273 281 TYIAMLSGFSLALLINCASVMKNVLSVSIMTGLFLLQNRAVSQKRQGAG----------------FL-------PGNQMI 337 (362)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~----------------~~-------~g~~~~ 337 (362)
...++. + ...+...+.+.+.....+....++.|.+|+++.+.. .. .|.+..
T Consensus 85 ~~~~~~-----~-~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~ 158 (485)
T TIGR00711 85 GVAPNL-----E-LMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWI 158 (485)
T ss_pred hCcCCH-----H-HHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceeh
Confidence 544321 1 223334444455566678888899998874333110 00 145677
Q ss_pred HHHHHHHHHHHHHhhc
Q 041273 338 FFILNLVEALGVILTF 353 (362)
Q Consensus 338 f~~~~~~~~i~~~~~~ 353 (362)
|++.+.+.++..++.+
T Consensus 159 f~~~~~~~~~~~~~~~ 174 (485)
T TIGR00711 159 FLINVPIGIIVVVVAF 174 (485)
T ss_pred hhhhhHHHHHHHHHHH
Confidence 8777766666655544
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.4e-06 Score=76.10 Aligned_cols=56 Identities=13% Similarity=0.033 Sum_probs=48.5
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHH
Q 041273 227 LSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYI 283 (362)
Q Consensus 227 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 283 (362)
+|.|+.+.+...+...++..+++ +..+++.||+|||+.+..+.....++.+.....
T Consensus 38 ~~~s~~~~~~~~~~~~~~~~~~~-~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~ 93 (394)
T PRK11652 38 LNVREGAVQAVMAAYLLTYGLSQ-LFYGPLSDRVGRRPVILVGMSIFILGTLVALFA 93 (394)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHH-HhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999998 899999999999999988888777766655443
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.4e-06 Score=73.51 Aligned_cols=158 Identities=13% Similarity=0.093 Sum_probs=109.6
Q ss_pred chhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHH
Q 041273 191 WPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAG 270 (362)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~ 270 (362)
+-+....+.+..+.+.--.++...|....+ .++|..+.|.+.+...+.-.++. ++.|.++||.++|..+..++
T Consensus 29 qif~~~fiGYa~fYl~RknF~~a~p~l~e~------~~lsk~~lG~i~s~f~i~YG~sK-f~~G~~sDr~npr~fm~~gL 101 (448)
T COG2271 29 QIFLSIFIGYAAFYLTRKNFNLAMPALIED------GGLSKTQLGILGSAFSITYGVSK-FVMGVLSDRSNPRYFMAFGL 101 (448)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhccHHHHHh------cCCCHHHHHHHHHHHHHHHHHHH-HHhhhhcccCCCceeehHHH
Confidence 344555566666666666665555544433 57999999999999999999998 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhccccccCCCC-------------CC-----
Q 041273 271 VLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMTGLFLLQNRAVSQKRQGAGF-------------LP----- 332 (362)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-------------~~----- 332 (362)
+++++..+++++.+... ++.+...+.+.+-..-.|.....+.+-+|++.++... .+
T Consensus 102 ilsai~nil~Gfs~s~~------~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~l 175 (448)
T COG2271 102 ILSAIVNILFGFSPSLF------LFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALL 175 (448)
T ss_pred HHHHHHHHHHhhhhHHH------HHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHH
Confidence 99999999998887332 3333444444444444566677777777743332211 00
Q ss_pred -------ChhHHHHHHHHHHHHHHHhhccccccccC
Q 041273 333 -------GNQMIFFILNLVEALGVILTFKPFLIQRA 361 (362)
Q Consensus 333 -------g~~~~f~~~~~~~~i~~~~~~~~~l~~~~ 361 (362)
+.+..|++-++++++-.++.++.-..+|+
T Consensus 176 a~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pq 211 (448)
T COG2271 176 AFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQ 211 (448)
T ss_pred HHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 45778888888888777776654444443
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.6e-07 Score=79.56 Aligned_cols=128 Identities=16% Similarity=0.201 Sum_probs=100.6
Q ss_pred cchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHH-HH
Q 041273 4 SVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLST-LS 81 (362)
Q Consensus 4 ~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~-~~ 81 (362)
-.+..++.+|+|.|+.++++..+..+=...+++++|.+.+.+.+.+.|+-.+....+ ..|+++.+|+|-.++...+ .+
T Consensus 276 m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~ 355 (412)
T PF01306_consen 276 MFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQ 355 (412)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHT
T ss_pred HHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHH
Confidence 346788999999999999999999999999999999999999999999998888777 9999999999888888887 47
Q ss_pred HhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHH-HHHHHhhcccccCC
Q 041273 82 TAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFA-VTIASCWIPETLHK 147 (362)
Q Consensus 82 ~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~ 147 (362)
...++|..+.+.++|.+.| ..|.+..| ++.+.+.++ .++..+.++++++.
T Consensus 356 ~~~~~~~~i~s~~~G~lyd-------~~G~~~ty---------limg~iv~~~~li~~f~l~~~~~~ 406 (412)
T PF01306_consen 356 FAKQIGIIILSPLAGYLYD-------RIGFQHTY---------LIMGLIVLPFTLISAFTLKKDKKQ 406 (412)
T ss_dssp TTHHHHHHHHHHHHHHHHH-------HHHHHHHH---------HHHHHHHHHHHHHHHHHS--SSST
T ss_pred HHHHHHHHHHhhhHHhhHh-------hcCcHHHH---------HHHHHHHHHHHHHheeeecCCCcc
Confidence 8999999999999999998 56655544 555555544 45555666665443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=7.1e-06 Score=74.35 Aligned_cols=128 Identities=8% Similarity=-0.002 Sum_probs=81.1
Q ss_pred chhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHH
Q 041273 191 WPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAG 270 (362)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~ 270 (362)
|++....+.....+.....+....+.... .++|+|+.+.+.+.++..+...+.+ +..+++.||+|.|+.+..+.
T Consensus 34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~-----~~~~ls~~q~g~l~ai~~l~~al~r-ip~G~l~Dr~G~R~v~~~~~ 107 (462)
T PRK15034 34 RNLWISVSCLLLAFCVWMLFSAVTVNLNK-----IGFNFTTDQLFLLTALPSVSGALLR-VPYSFMVPIFGGRRWTVFST 107 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCChHHHHHHH
Confidence 45555555544444444444333332222 1389999999999999999999998 66799999999999999998
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcccccc
Q 041273 271 VLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMTGLFLLQNRAVSQKRQ 326 (362)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 326 (362)
.+..+..+..++.........+. ..+...+.++. ...++.....+++.+|++|+
T Consensus 108 ll~~i~~~~~~~a~~~~~~s~~~-lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~r 161 (462)
T PRK15034 108 AILIIPCVWLGIAVQNPNTPFGI-FIVIALLCGFA-GANFASSMGNISFFFPKAKQ 161 (462)
T ss_pred HHHHHHHHHHHHHHcccCCCHHH-HHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHh
Confidence 88877776666541111011222 22222332333 33557778888998986654
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.1e-06 Score=75.91 Aligned_cols=98 Identities=30% Similarity=0.471 Sum_probs=83.8
Q ss_pred ccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHhhhcCcchhH-HHHHHhhhcc-ccchhhHH
Q 041273 3 TSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVS--FWMAIATRFLLGALNGLLGPI-KAYACEILRD-QHKTLGLS 78 (362)
Q Consensus 3 ~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~--~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~-~~r~~~~~ 78 (362)
++++.|.++||+|||+.+..+.....++.+...+..+ .+.+.+.|+.+|++.+...+. .+++.|..|+ ++|+...+
T Consensus 55 ~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (338)
T COG0477 55 GSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVG 134 (338)
T ss_pred HhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHH
Confidence 4578999999999998888888766666677777666 899999999999998888887 9999999998 78899999
Q ss_pred HHHH-hhhhhhhhhhhhhhhhcC
Q 041273 79 TLST-AWGTGLIIGPAVGGFLAQ 100 (362)
Q Consensus 79 ~~~~-~~~~g~~~g~~~~~~l~~ 100 (362)
.... ...+|..++|.+++.+..
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T COG0477 135 LVTLGAGALGLALGPLLAGLLLG 157 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888 688899999988888876
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.43 E-value=8.1e-07 Score=81.78 Aligned_cols=126 Identities=13% Similarity=0.263 Sum_probs=102.5
Q ss_pred cccchhhhhhcccC--CchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHH
Q 041273 2 LTSVLWGMVADRCG--RKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLS 78 (362)
Q Consensus 2 i~~~~~G~l~Dr~G--rr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~ 78 (362)
++-++.|+++|+.. ++.+..++.+..+++...+.++++++.+....++.|+..|.+... ...+.|..+.++-+.+.|
T Consensus 348 ~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~G 427 (509)
T KOG2504|consen 348 IGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYG 427 (509)
T ss_pred hhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHH
Confidence 46788999999988 456777888888899999999999999999999999999988777 679999999999999999
Q ss_pred HHHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHhhcc
Q 041273 79 TLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIP 142 (362)
Q Consensus 79 ~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (362)
+.....+++.++||++.+.+.+..++ |...| +.+++..++....++..|
T Consensus 428 l~l~~~gi~~l~gpPiag~~~d~tg~------Y~~~f---------~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 428 LLLLFQGIGALVGPPIAGLLYDITGN------YDHAF---------YFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHHhHHHHHcCcccceeeeeccCC------eeeeh---------hhcChHHHHHHHHHHHhH
Confidence 99999999999999999988873221 33333 555555555555555555
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.1e-06 Score=75.96 Aligned_cols=127 Identities=9% Similarity=0.038 Sum_probs=83.4
Q ss_pred ccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 041273 226 GLSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVL 305 (362)
Q Consensus 226 ~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (362)
+++.+..+.+...+.+.++..+++ +..++++||+|||+.+..+..+..++.+...+.++. + ...+.-.+.+..
T Consensus 45 ~~~~~~~~~~~~~s~~~~~~~~~~-~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~-----~-~l~~~r~l~Gi~ 117 (413)
T PRK15403 45 DFNADVSLAPASVSLYLAGGMALQ-WLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSM-----T-QFLIARFIQGTS 117 (413)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHH-HhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCH-----H-HHHHHHHHHHHH
Confidence 478899999999999999999998 889999999999999998888777766665544321 1 122222232333
Q ss_pred HHHhhhHHHHHHhhhccccccCCC----------------C-------CCChhHHHHHHHHHHHHHHHhhcccccccc
Q 041273 306 SVSIMTGLFLLQNRAVSQKRQGAG----------------F-------LPGNQMIFFILNLVEALGVILTFKPFLIQR 360 (362)
Q Consensus 306 ~~~~~~~~~~~~~~~~p~~~~~~~----------------~-------~~g~~~~f~~~~~~~~i~~~~~~~~~l~~~ 360 (362)
.....+.......|.+|+++.... . ..|.+..|++.+++.+++.+..+. ++||+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~-~lp~~ 194 (413)
T PRK15403 118 ICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLL-AMPET 194 (413)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-hCCCC
Confidence 333344556677777774432110 0 015788898888887777665442 45543
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=8.6e-06 Score=75.77 Aligned_cols=150 Identities=11% Similarity=0.045 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Q 041273 196 STIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIP 275 (362)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~ 275 (362)
..+..++............|....+ +|.+..+.++..+.+.++..... +..+++.||+|||+.+..+..+..+
T Consensus 11 ~~~~~~~~~ld~tiv~~a~p~i~~~------l~~s~~~~~~~~~~~~l~~~~~~-~~~G~l~D~~Grk~~l~~~~~~~~~ 83 (495)
T PRK14995 11 IVLVYIPVAIDATVLHVAAPTLSMT------LGASGNELLWIIDIYSLVMAGMV-LPMGALGDRIGFKRLLMLGGTLFGL 83 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------hCCCHhHHHHHHHHHHHHHHHHH-HHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3344444444444555556655433 78899999999999999888887 8899999999999999999998888
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhc-c-ccccCC---------------CC-------C
Q 041273 276 LLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMTGLFLLQNRAV-S-QKRQGA---------------GF-------L 331 (362)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p-~~~~~~---------------~~-------~ 331 (362)
+.+..++.++. + ...+.-.+.+.+.....|.....+.+.. | ++|... +. .
T Consensus 84 ~~~~~~~a~~~-----~-~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~ 157 (495)
T PRK14995 84 ASLAAAFSPTA-----S-WLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEH 157 (495)
T ss_pred HHHHHHHcCCH-----H-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 87776654422 1 2223333444455555666666665544 4 233210 00 1
Q ss_pred CChhHHHHHHHHHHHHHHHhhccccccc
Q 041273 332 PGNQMIFFILNLVEALGVILTFKPFLIQ 359 (362)
Q Consensus 332 ~g~~~~f~~~~~~~~i~~~~~~~~~l~~ 359 (362)
.|.++.|++...+.++..++.++ ++|+
T Consensus 158 ~gwr~~f~i~~~~~~~~~~l~~~-~l~~ 184 (495)
T PRK14995 158 FYWGSVFLINVPIVLVVMGLTAR-YVPR 184 (495)
T ss_pred CChHHHHHHHHHHHHHHHHHHHH-hCCC
Confidence 15788898888777777665554 3444
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=1e-06 Score=80.78 Aligned_cols=99 Identities=21% Similarity=0.299 Sum_probs=78.1
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccc-------
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGL--SVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQ------- 71 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~--~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~------- 71 (362)
++.+++++++||+|+|+.+..+.+..++......+ .++.+.+++..++.|++.+...+. .++++|..+.+
T Consensus 279 i~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r 358 (444)
T PRK09669 279 FGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRR 358 (444)
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcC
Confidence 34578899999999999999887766654433322 357777888888999998888787 99999998632
Q ss_pred cchhhHHHHHHhhhhhhhhhhhhhhhhcC
Q 041273 72 HKTLGLSTLSTAWGTGLIIGPAVGGFLAQ 100 (362)
Q Consensus 72 ~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 100 (362)
+.|..++..+....+|..+|+.+++.+.+
T Consensus 359 ~~g~~~s~~~~~~klg~alg~~i~g~ll~ 387 (444)
T PRK09669 359 LDGLVFSTNLFAIKLGLAIGGAVVGWILA 387 (444)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23556788888999999999999999887
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.40 E-value=5.4e-07 Score=80.04 Aligned_cols=84 Identities=15% Similarity=0.108 Sum_probs=70.3
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhh-----------hhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhc
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLS-----------VSFWMAIATRFLLGALNGLLGPI-KAYACEILR 69 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~-----------~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~ 69 (362)
++.+++|++.||+|||+.+..+.++.++...+..+. ++.+.+....++.+++.+...+. .+++.|.+|
T Consensus 260 ~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p 339 (356)
T TIGR00901 260 LGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSN 339 (356)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcC
Confidence 467889999999999999988888887776655543 45677788888999998888787 999999999
Q ss_pred cccchhhHHHHHHhhh
Q 041273 70 DQHKTLGLSTLSTAWG 85 (362)
Q Consensus 70 ~~~r~~~~~~~~~~~~ 85 (362)
+|+|++.+++.+...+
T Consensus 340 ~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 340 PKFGATQMALLSSLSA 355 (356)
T ss_pred CCccHHHHHHHHHHHh
Confidence 9999999999877654
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.6e-06 Score=77.72 Aligned_cols=104 Identities=23% Similarity=0.362 Sum_probs=86.0
Q ss_pred chhhhhhcccCCchHHHHHHHHHHHHHHHHhhh-hhHHHHHHH----HHHHhhhcCcchhH-HHHHHhhhccccchhhHH
Q 041273 5 VLWGMVADRCGRKPVIIIGCITVVIFNTLFGLS-VSFWMAIAT----RFLLGALNGLLGPI-KAYACEILRDQHKTLGLS 78 (362)
Q Consensus 5 ~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~l~~~----r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~ 78 (362)
...+++..|+|.|+++.++.+..++=..+.+.. ++.+...+. ..++|+.-+...++ ..++.+..|++.|+++.+
T Consensus 261 ~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~ 340 (400)
T PF03825_consen 261 FFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQG 340 (400)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHH
Confidence 457888899999999999999999998888887 554443333 45699988888777 999999999999999999
Q ss_pred HHHH-hhhhhhhhhhhhhhhhcCccccCCccccccccc
Q 041273 79 TLST-AWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMF 115 (362)
Q Consensus 79 ~~~~-~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~ 115 (362)
+++. ..++|..+|..++|++.| .+|-+..+
T Consensus 341 l~~~~~~Glg~~iG~~igG~l~~-------~~g~~~~~ 371 (400)
T PF03825_consen 341 LYSALSFGLGGAIGSLIGGWLYD-------AFGARGMF 371 (400)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHH-------Hhcchhhh
Confidence 8776 578999999999999998 55555444
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.3e-05 Score=69.82 Aligned_cols=119 Identities=12% Similarity=0.057 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 041273 193 FISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVL 272 (362)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~ 272 (362)
++...+.++........+..+.|.++.+. +|+|+.+.+++.+...++..+++ ++.+++.||+|+|+.+..+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~s~~~~~~~~~~~~~~~~~~~-~~~g~l~dr~g~r~~~~~~~~~ 76 (366)
T TIGR00886 3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDD-----LGLSTAQLGNLVAVPVLAGAVLR-IILGFLVDKFGPRYTTTLSLLL 76 (366)
T ss_pred hHHHHHHHHHHHHHHHHhHHhhhHHHHHH-----hCCCHHHhhHhhHHHHHHHHHHH-HHHHHHHHHhCchHHHHHHHHH
Confidence 44445555555555555666666544444 79999999999999999999998 9999999999999999999988
Q ss_pred HHHHHHHHHHHH-hhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcccc
Q 041273 273 SIPLLTSYTYIA-MLSGFSLALLINCASVMKNVLSVSIMTGLFLLQNRAVSQK 324 (362)
Q Consensus 273 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 324 (362)
..++.+...+.. +.. ...+...+.+..+. ..+....++.+..|++
T Consensus 77 ~~i~~~~~~~~~~~~~------~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~ 122 (366)
T TIGR00886 77 LAIPCLWAGLAVQSYS------VLLLLRLFIGIAGG-SFASCMPWISFFFPKK 122 (366)
T ss_pred HHHHHHHHHHHhhhHH------HHHHHHHHHHHhch-hhHhHHHHHHHhcCHh
Confidence 888877766554 211 11122222222322 2344567778877743
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.38 E-value=6.8e-07 Score=82.23 Aligned_cols=134 Identities=8% Similarity=0.002 Sum_probs=96.2
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhh----------hhHHHHHHHHHHHhhhcCcc-hhHHHHHHhhhcc
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLS----------VSFWMAIATRFLLGALNGLL-GPIKAYACEILRD 70 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~----------~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~ 70 (362)
++....+++.+|++.|+++.++.++.+++....... ++.+.+...-++.+++.+.. .|...++.+..|+
T Consensus 303 ~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~ 382 (468)
T TIGR00788 303 CGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPS 382 (468)
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCC
Confidence 356778888899999999999999999887654311 33445556677888887775 4449999999999
Q ss_pred ccchhhHHHHHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHhhccc
Q 041273 71 QHKTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPE 143 (362)
Q Consensus 71 ~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 143 (362)
++++..+++.+...++|..+++.+++.+.+ ..|-..-..+..|. ...++.+..++.+.....+|+
T Consensus 383 ~~egt~~al~~s~~~lg~~v~~~~gg~l~~-------~~g~~~~~~~~~~~-~i~i~~~~~l~~l~~~~llP~ 447 (468)
T TIGR00788 383 GCESSVFALLASILHLGSSVSGFLGVLLME-------TIGITCDNSNNLWL-LILGHSLAPLLPLPLLHLLPR 447 (468)
T ss_pred CceehHHHHHHHHHHHHHHHHHHHHHHHHH-------HcCCCcccccchHH-HHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999988 33311111011122 233444455555555568887
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.1e-06 Score=81.10 Aligned_cols=99 Identities=12% Similarity=0.103 Sum_probs=78.0
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhcc-----
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGL-----SVSFWMAIATRFLLGALNGLLGPI-KAYACEILRD----- 70 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~----- 70 (362)
++.+++++++||+|+|+.+.++..+..++.+...+ .++.+.+++.-++.|++.+...+. .++++|..+.
T Consensus 281 i~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~t 360 (473)
T PRK10429 281 VTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKL 360 (473)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhc
Confidence 45678999999999999999888776666554432 345667777778888888877666 8999999762
Q ss_pred --ccchhhHHHHHHhhhhhhhhhhhhhhhhcC
Q 041273 71 --QHKTLGLSTLSTAWGTGLIIGPAVGGFLAQ 100 (362)
Q Consensus 71 --~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 100 (362)
++.|..++......-+|..+++.+.|++.+
T Consensus 361 G~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~ 392 (473)
T PRK10429 361 GIRCESIAYSVQTMVVKGGSAFAAFFIGVVLG 392 (473)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333558899999999999999999999876
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.37 E-value=2e-05 Score=71.34 Aligned_cols=119 Identities=6% Similarity=-0.108 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHH
Q 041273 194 ISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLS 273 (362)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~ 273 (362)
......++...+.........|.+. + ++|.|..+.|.+.+...++..+++ +..+++.||+|+|+.+..+..+.
T Consensus 6 ~~~~~~f~~~G~~~~~~~~l~~~~~-~-----~~~~s~~~~g~l~s~~~~g~~i~~-~~~g~l~~r~G~r~~~~~g~~l~ 78 (410)
T TIGR00885 6 ALITSLFALWGFANDITNPMVPQFQ-Q-----AFTLTAFQAALVQSAFYGGYFIMA-IPAAIFMKKLSYKAGILLGLFLY 78 (410)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH-H-----HhCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCchHHHHHHHHHH
Confidence 3344444444444433344555442 2 379999999999999999999998 88999999999999999999998
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcc
Q 041273 274 IPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMTGLFLLQNRAVS 322 (362)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 322 (362)
.++.+++......++ .+ .......+.+.+.....+..+.++.+..|
T Consensus 79 ~~g~~l~~~~~~~~~--~~-~~l~~~~l~G~g~g~~~~~~~~~~~~~~~ 124 (410)
T TIGR00885 79 ALGAFLFWPAAEIMN--YT-LFLVGLFILTAGLGFLETAANPYILVMGP 124 (410)
T ss_pred HHHHHHHHHHHhhcc--HH-HHHHHHHHHHhhHHHHHhhhhHHHHHHCC
Confidence 888766543332221 11 12222233333333444555566666555
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=5.3e-06 Score=74.30 Aligned_cols=120 Identities=11% Similarity=0.093 Sum_probs=84.0
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 041273 227 LSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLS 306 (362)
Q Consensus 227 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (362)
+|.|+.+.+...+...++..+++ +..+++.||+|||+.+..+..+..++.....+..+. + ...+...+.+.+.
T Consensus 21 ~~~s~~~~~~~~~~~~~~~~~~~-~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~-----~-~~~~~~~l~g~~~ 93 (377)
T PRK11102 21 FGVSAGSVQMTLSAYILGFAIGQ-LFYGPMADSFGRKPVILGGTLVFALAAVACALAQTI-----D-QLIYMRFLHGLAA 93 (377)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHH-HhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccH-----H-HHHHHHHHHHHHH
Confidence 68999999999999999999998 899999999999999999988888777766554321 1 1223333444455
Q ss_pred HHhhhHHHHHHhhhccccccCCCC-----------------------CCChhHHHHHHHHHHHHHHHhhc
Q 041273 307 VSIMTGLFLLQNRAVSQKRQGAGF-----------------------LPGNQMIFFILNLVEALGVILTF 353 (362)
Q Consensus 307 ~~~~~~~~~~~~~~~p~~~~~~~~-----------------------~~g~~~~f~~~~~~~~i~~~~~~ 353 (362)
....+....++.+..|+++.+... ..|.+.+|++.+.+.++..++..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (377)
T PRK11102 94 AAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVF 163 (377)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence 555677778888888754331110 01566778887777777655544
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.4e-05 Score=69.93 Aligned_cols=163 Identities=10% Similarity=0.051 Sum_probs=112.9
Q ss_pred cccccc-hhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhh-chh
Q 041273 186 SLMKNW-PFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLAISGFSLLVFQLTLYPYVERMI-GPI 263 (362)
Q Consensus 186 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~-g~~ 263 (362)
..+++| .+..+...-+.=-+..++....+..|+......+ +|+|.+++..+++.++...-+.. .++|+++||+ |+|
T Consensus 15 ~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~g-Lg~~~~~A~~l~~~y~slVY~t~-i~GG~laDr~LG~~ 92 (498)
T COG3104 15 KFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDG-LGFDETHATGLFSAYGSLVYLTP-IIGGWLADRVLGTR 92 (498)
T ss_pred ccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccc-CCcChHhhHHHHHHHHHHHHHHH-HHHHHHHHHhcchh
Confidence 345544 4555555556556777777778888887765444 78999999888888887777776 8999999985 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcc--ccccCCCCCC---------
Q 041273 264 IITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMTGLFLLQNRAVS--QKRQGAGFLP--------- 332 (362)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~~~~~~~--------- 332 (362)
+.+..+.++..++.+++....... ...+++...+...+....=|...+++.|..| +.|..+.+..
T Consensus 93 ~tI~lGail~~iGh~~L~~~~~~~----~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGs 168 (498)
T COG3104 93 RTIVLGAILMAIGHLVLAISSVSG----PGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGS 168 (498)
T ss_pred HHHHHHHHHHHHHHHHHhcccccc----ccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHH
Confidence 999999999999988886663011 1122333333333444555778889999888 3333222211
Q ss_pred --------------ChhHHHHHHHHHHHHHHHhhcc
Q 041273 333 --------------GNQMIFFILNLVEALGVILTFK 354 (362)
Q Consensus 333 --------------g~~~~f~~~~~~~~i~~~~~~~ 354 (362)
|++..|...++-+.++.+..+.
T Consensus 169 l~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~ 204 (498)
T COG3104 169 LIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLL 204 (498)
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999998876554
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.35 E-value=6.2e-06 Score=68.24 Aligned_cols=96 Identities=18% Similarity=0.222 Sum_probs=76.9
Q ss_pred cchhhhhhcccCCchHHHHHHHHHHHHHHHHhhh-------hhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchh
Q 041273 4 SVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLS-------VSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTL 75 (362)
Q Consensus 4 ~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~-------~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~ 75 (362)
+++.|.+.|++|.|.++.+|.+...+|.....++ .++|.+.+..++.|.+.+....+ .....+.+| ++||+
T Consensus 53 G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~ 131 (250)
T PF06813_consen 53 GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGT 131 (250)
T ss_pred cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCc
Confidence 4788999999999999999999999999887654 36778887778877776655454 666668887 57999
Q ss_pred hHHHHHHhhhhhhhhhhhhhhhhcC
Q 041273 76 GLSTLSTAWGTGLIIGPAVGGFLAQ 100 (362)
Q Consensus 76 ~~~~~~~~~~~g~~~g~~~~~~l~~ 100 (362)
+.|+.-...+++..+-..+...+.+
T Consensus 132 vvgilk~~~GLSaai~t~i~~~~f~ 156 (250)
T PF06813_consen 132 VVGILKGFFGLSAAIFTQIYSAFFG 156 (250)
T ss_pred eehhhhHHHHhHHHHHHHHHHHHcC
Confidence 9999999999988776666655554
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.7e-06 Score=88.93 Aligned_cols=98 Identities=16% Similarity=0.135 Sum_probs=87.3
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTL 80 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~ 80 (362)
+++++.|+++||+++|+.+.++.++.+++.++..+..+.+.+++..++.|++.+...+. .+++.+..|+++|+++++..
T Consensus 284 ~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~ 363 (1146)
T PRK08633 284 IGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAAN 363 (1146)
T ss_pred HHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHH
Confidence 46789999999999999999998888888888888888888888899999988887666 99999999999999999999
Q ss_pred HHhhhhhhhhhhhhhhhhc
Q 041273 81 STAWGTGLIIGPAVGGFLA 99 (362)
Q Consensus 81 ~~~~~~g~~~g~~~~~~l~ 99 (362)
+....+|..+++.+++.+.
T Consensus 364 ~~~~~lg~~~~~~~~~~l~ 382 (1146)
T PRK08633 364 NFLQNVGMLLFLALTTLFS 382 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999988888887665
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.33 E-value=9e-06 Score=75.52 Aligned_cols=125 Identities=14% Similarity=0.106 Sum_probs=81.0
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 041273 227 LSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLS 306 (362)
Q Consensus 227 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (362)
+|-+ ....++.....+...+.. ++.++++|.+|||.....+.++..++.++..-..+.. .......+.+.+
T Consensus 74 iG~~-~~~~w~~~~~~l~~av~~-~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~------~~iag~~l~Gvg- 144 (599)
T PF06609_consen 74 IGGS-DNWSWFSTAWTLASAVSF-PFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMN------TFIAGMVLYGVG- 144 (599)
T ss_pred cCCC-ccchHHHHHHHHHHHHHH-HhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHH------HHHHHHHHHHHh-
Confidence 5543 445667777777777776 8899999999999999999999998888776554433 122222232222
Q ss_pred HHhhhHHHHHHhhhccccccC-CC----------------------CCCChhHHHHHHHHHHHHHHHhhcccccccc
Q 041273 307 VSIMTGLFLLQNRAVSQKRQG-AG----------------------FLPGNQMIFFILNLVEALGVILTFKPFLIQR 360 (362)
Q Consensus 307 ~~~~~~~~~~~~~~~p~~~~~-~~----------------------~~~g~~~~f~~~~~~~~i~~~~~~~~~l~~~ 360 (362)
.+........++|..|.+.+. +. ...+.++.|++..+...++++..+.++.|.+
T Consensus 145 aG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~ 221 (599)
T PF06609_consen 145 AGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYFPPP 221 (599)
T ss_pred hHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 333344455678888833221 10 0115788999888888888777666555543
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.32 E-value=9.6e-07 Score=77.61 Aligned_cols=127 Identities=8% Similarity=0.005 Sum_probs=99.9
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 041273 227 LSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLS 306 (362)
Q Consensus 227 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (362)
+|.+++..|++.....+.-++.+ ++.+++.||++|++++.+|..+-.++.+.-++... .+.+.+.=.+.+++.
T Consensus 63 fni~~s~~Gll~~vf~v~~~i~s-Pl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~------Fwq~~l~R~~vGiGe 135 (493)
T KOG1330|consen 63 FNISDSELGLLQTVFIVVFMIAS-PLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNH------FWQVLLCRGFVGIGE 135 (493)
T ss_pred cCCCchhccchhHHHHHHHHHHH-HHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHH------HHHHHHHHHHhccch
Confidence 78999999999999999999998 99999999999999999999988888777766642 224455566667788
Q ss_pred HHhhhHHHHHHhhhccccccCCCCCC-----------------------C-hhHHHHHHHHHHHHHHHhhccccccccC
Q 041273 307 VSIMTGLFLLQNRAVSQKRQGAGFLP-----------------------G-NQMIFFILNLVEALGVILTFKPFLIQRA 361 (362)
Q Consensus 307 ~~~~~~~~~~~~~~~p~~~~~~~~~~-----------------------g-~~~~f~~~~~~~~i~~~~~~~~~l~~~~ 361 (362)
..+.|..++++++.+|+++.+..+.. + .++.|...+++.++..++.+. +.+||+
T Consensus 136 As~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~-f~~eP~ 213 (493)
T KOG1330|consen 136 ASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFL-FVREPE 213 (493)
T ss_pred hhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHh-hccCcc
Confidence 88899999999999995544322110 2 577888999998888877765 666654
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.1e-06 Score=78.43 Aligned_cols=104 Identities=19% Similarity=0.318 Sum_probs=93.9
Q ss_pred chhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHH-HH
Q 041273 5 VLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTL-ST 82 (362)
Q Consensus 5 ~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~-~~ 82 (362)
++.+++.+|+|+-+++..++....+=.+.....+|.|+.+..-+++|+..+....+ .+|+++..||+-|..+.++. ..
T Consensus 424 ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~ 503 (618)
T KOG3762|consen 424 FFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGI 503 (618)
T ss_pred HHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999988777 99999999999999999966 45
Q ss_pred hhhhhhhhhhhhhhhhcCccccCCccccccccc
Q 041273 83 AWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMF 115 (362)
Q Consensus 83 ~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~ 115 (362)
..++|-.+|.++||.+.+ .+|-|..|
T Consensus 504 f~GlG~g~GslIGG~~v~-------~fg~~ttf 529 (618)
T KOG3762|consen 504 FHGLGKGLGSLIGGFVVE-------RFGARTTF 529 (618)
T ss_pred hcccCcchhhhhhhhhhe-------eehhHHHH
Confidence 678999999999999998 66666666
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.4e-06 Score=75.28 Aligned_cols=97 Identities=13% Similarity=0.028 Sum_probs=76.9
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhcccc-chhhHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQH-KTLGLST 79 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~-r~~~~~~ 79 (362)
++++..+++.||.++|+++..+. ..++......+.++++...+..++.|++.+...+. .+.+.|..|+|+ ++++.+.
T Consensus 256 ~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~ 334 (393)
T PRK11195 256 VGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQHSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAV 334 (393)
T ss_pred HHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHH
Confidence 46778889999999998888775 34444455566777777777888899988876655 888888766654 7999999
Q ss_pred HHHhhhhhhhhhhhhhhhhc
Q 041273 80 LSTAWGTGLIIGPAVGGFLA 99 (362)
Q Consensus 80 ~~~~~~~g~~~g~~~~~~l~ 99 (362)
.+...++|..++..+.+.+.
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~ 354 (393)
T PRK11195 335 QNFNENLAMLLMLGLYSLLV 354 (393)
T ss_pred HhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998764
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.1e-05 Score=62.68 Aligned_cols=66 Identities=24% Similarity=0.243 Sum_probs=50.1
Q ss_pred ccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH--HHHHHhhhc
Q 041273 3 TSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI--KAYACEILR 69 (362)
Q Consensus 3 ~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~--~~~i~~~~~ 69 (362)
...+.|-++||-|||+.-+.-++...++++ .-.++.+-.++++|.+.|+..+....+ .-++.|..+
T Consensus 88 FGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHne 155 (454)
T KOG4332|consen 88 FGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNE 155 (454)
T ss_pred HHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhh
Confidence 456789999999999976665555555443 456788999999999999998876544 556778774
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.3e-06 Score=75.23 Aligned_cols=96 Identities=9% Similarity=0.034 Sum_probs=67.7
Q ss_pred cchhhhhhcccCCc---hHHH-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHH
Q 041273 4 SVLWGMVADRCGRK---PVII-IGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLS 78 (362)
Q Consensus 4 ~~~~G~l~Dr~Grr---~~l~-~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~ 78 (362)
.+-.++++||.+|| +... ...++.++.....++..+.+...+.-.+.|++.....+. .++.+|.+|++.|++++|
T Consensus 240 ~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G 319 (368)
T TIGR00903 240 LIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAG 319 (368)
T ss_pred HHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccc
Confidence 34467888887654 3322 234444444444455555544444555666666666565 889999999999999999
Q ss_pred HHHHhhhhhhhhhhhhhhhhc
Q 041273 79 TLSTAWGTGLIIGPAVGGFLA 99 (362)
Q Consensus 79 ~~~~~~~~g~~~g~~~~~~l~ 99 (362)
+.+....+|...+|.+.+.+.
T Consensus 320 ~~~~~g~~~~~~~~~~~~~~~ 340 (368)
T TIGR00903 320 AIGFTSRAISVALALAAMLFI 340 (368)
T ss_pred hhhHHHHHHHHHHHHHHHHHh
Confidence 999999999999999988776
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.5e-06 Score=76.13 Aligned_cols=99 Identities=25% Similarity=0.298 Sum_probs=88.3
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHhhhcCcchhH-HHHHHhhhcc-------c
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSV--SFWMAIATRFLLGALNGLLGPI-KAYACEILRD-------Q 71 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~-------~ 71 (362)
++.+++++++||+|+|+.+..+.++.+++.++..+.+ |.+.+++.-++.|++.+...+. .++++|..+. +
T Consensus 275 v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r 354 (428)
T PF13347_consen 275 VGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRR 354 (428)
T ss_pred HHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCC
Confidence 4678899999999999999999999999999988886 9999999999999999988777 9999998873 3
Q ss_pred cchhhHHHHHHhhhhhhhhhhhhhhhhcC
Q 041273 72 HKTLGLSTLSTAWGTGLIIGPAVGGFLAQ 100 (362)
Q Consensus 72 ~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 100 (362)
+.|..++..+....+|..+++.+.+.+.+
T Consensus 355 ~~g~~~s~~~~~~k~~~~la~~i~g~~l~ 383 (428)
T PF13347_consen 355 REGMYFSVNSFFIKIGQGLAGAIVGLLLA 383 (428)
T ss_pred chHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 35888999999999999999999998876
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.7e-05 Score=67.22 Aligned_cols=239 Identities=11% Similarity=0.015 Sum_probs=139.6
Q ss_pred hhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhHHHHHHhhhccccchhhHHHHHHhhhhhh
Q 041273 9 MVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPIKAYACEILRDQHKTLGLSTLSTAWGTGL 88 (362)
Q Consensus 9 ~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~ 88 (362)
.+.|-.--|++++.-.+.......+.-+.++.+.+-+.-+..|...+.-..-++++-+.++++++.++.+...+..-.|.
T Consensus 64 lLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAaEIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~ 143 (433)
T KOG3810|consen 64 LLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAAEIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGK 143 (433)
T ss_pred HHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHHHHhhhheeeeecCHHHHHHHHHHhHHHHHHHh
Confidence 46788888999888888888888888899999999999999998877654449999999999999999999999999999
Q ss_pred hhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHhhcccccCCCCcCCccccccchhhhhhcCC
Q 041273 89 IIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLHKHNEDGVSLDVSCDALESACGS 168 (362)
Q Consensus 89 ~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (362)
..|..++..+.+. + +..+.....+......+......++|..++..--++++.+....+.++...
T Consensus 144 ~~g~vlaQlLvs~--------~------~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~~~~~~v~~~e~~~~- 208 (433)
T KOG3810|consen 144 FVGSVLAQLLVSL--------E------TLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHRLEDKISVGDLEEMNP- 208 (433)
T ss_pred HHHhHHHHHHhhh--------c------ccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhcccccceeccchhcCc-
Confidence 9999999888761 1 222333444444444445566677776654322111111111111111111
Q ss_pred CCcccccc---CcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHHHHHHHHH
Q 041273 169 NAEFKQDE---GSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLAISGFSL 245 (362)
Q Consensus 169 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~ 245 (362)
..+..+.. -.....+..+..+||+++.-.+...+.........++.-..-.+.. -+-.....|..-++..+.+
T Consensus 209 ~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~----~~~~~vyNG~veAv~tlLG 284 (433)
T KOG3810|consen 209 QASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEVA----PNPANVYNGAVEAVSTLLG 284 (433)
T ss_pred cchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhhC----CCchhhhcCHHHHHHHHHH
Confidence 00000000 0011234455677887766555544443333332222211111110 0112223455666666777
Q ss_pred HHHHHHHHHHHHHhhchhHHHH
Q 041273 246 LVFQLTLYPYVERMIGPIIITR 267 (362)
Q Consensus 246 ~~~~~~~~~~l~~~~g~~~~~~ 267 (362)
+++. +..+.+.-...|..-+.
T Consensus 285 a~~~-~~~g~l~i~w~r~g~~l 305 (433)
T KOG3810|consen 285 AIAA-LAAGYLNINWNRWGDLL 305 (433)
T ss_pred HHHH-HHHHheeeccchhhHHH
Confidence 7776 66777665555554333
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=4.5e-05 Score=69.74 Aligned_cols=120 Identities=6% Similarity=-0.063 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHH
Q 041273 194 ISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLS 273 (362)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~ 273 (362)
....+.++...+.........|.+ ++ ++|.|+.+.|+..+...++..+++ +..+++.||+|+|+.+..+..+.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~p~i-~~-----~~~~s~~~~gl~~~~~~~g~~i~~-~~~g~l~dr~G~r~~l~~g~~~~ 101 (438)
T PRK10133 29 ALLCSLFFLWAVANNLNDILLPQF-QQ-----AFTLTNFQAGLIQSAFYFGYFIIP-IPAGILMKKLSYKAGIITGLFLY 101 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HH-----HhCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCcHHHHHHHHHHH
Confidence 334444455555555555555654 22 389999999999999999999998 89999999999999999999998
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhccc
Q 041273 274 IPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMTGLFLLQNRAVSQ 323 (362)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 323 (362)
.++.++.......++ +....+...+.+.+.....+..+.++.+..|+
T Consensus 102 ~~~~~l~~~~~~a~~---~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~ 148 (438)
T PRK10133 102 ALGAALFWPAAEIMN---YTLFLVGLFIIAAGLGCLETAANPFVTVLGPE 148 (438)
T ss_pred HHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCh
Confidence 888766432222221 11222333333444445556666777776553
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.22 E-value=7.4e-06 Score=67.51 Aligned_cols=98 Identities=16% Similarity=0.270 Sum_probs=75.9
Q ss_pred cccchhhhhhcccCCchHHHHH-HHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIG-CITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLST 79 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~-~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~ 79 (362)
+.+++.|.++||+||+-..+.+ ++...++.....++. +.=+.+..+.|+..+....+ ...++...|+++.|.+++.
T Consensus 315 v~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~--lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf 392 (459)
T KOG4686|consen 315 VLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTF--LSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGF 392 (459)
T ss_pred hhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhh--ccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHH
Confidence 4678999999999999666554 444444544444432 22245556778877776666 8888999999999999999
Q ss_pred HHHhhhhhhhhhhhhhhhhcCc
Q 041273 80 LSTAWGTGLIIGPAVGGFLAQP 101 (362)
Q Consensus 80 ~~~~~~~g~~~g~~~~~~l~~~ 101 (362)
.+...++|..+.|++++++.+.
T Consensus 393 ~qsIqNLgla~i~Iiag~i~d~ 414 (459)
T KOG4686|consen 393 IQSIQNLGLAFIPIIAGFIADG 414 (459)
T ss_pred HHHHHhhhhhHHhhhhheeecC
Confidence 9999999999999999999983
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.21 E-value=4.3e-06 Score=74.26 Aligned_cols=98 Identities=12% Similarity=0.032 Sum_probs=75.9
Q ss_pred cccchhhhhhccc-CCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhc-cccchhhHH
Q 041273 2 LTSVLWGMVADRC-GRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILR-DQHKTLGLS 78 (362)
Q Consensus 2 i~~~~~G~l~Dr~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~-~~~r~~~~~ 78 (362)
+++++.|+++||+ +||+.+..+..+.+++.....+.++.+... .-++.|++.+...|. .+.+.+..+ +++++...+
T Consensus 247 ~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~ 325 (355)
T TIGR00896 247 ASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSA 325 (355)
T ss_pred HHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHH
Confidence 5678999999999 566777788788877777676665433322 456779988887776 777766554 567789999
Q ss_pred HHHHhhhhhhhhhhhhhhhhcC
Q 041273 79 TLSTAWGTGLIIGPAVGGFLAQ 100 (362)
Q Consensus 79 ~~~~~~~~g~~~g~~~~~~l~~ 100 (362)
+.+....+|..++|.+.|++.+
T Consensus 326 ~~~~~~~~~~~~gp~~~G~l~~ 347 (355)
T TIGR00896 326 MAQSIGYLLAALGPLFVGVLHD 347 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9888889999999999999988
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=9.2e-05 Score=69.27 Aligned_cols=99 Identities=7% Similarity=0.018 Sum_probs=64.0
Q ss_pred ccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 041273 226 GLSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVL 305 (362)
Q Consensus 226 ~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (362)
++|+|..+.+.+..... .....+ +..|++.||+|+|+++.++.++..++.++.++.....-......+++...+.+.+
T Consensus 56 ~lgls~~~l~~i~svg~-~~g~~~-lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G 133 (591)
T PTZ00207 56 RYNLTQRDLSTITTVGI-AVGYFL-LPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLG 133 (591)
T ss_pred HhCcCHHHHHHHHHHHH-HHHHHH-HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHH
Confidence 38999999998876633 333444 6789999999999999999999999888777652210001111222233333334
Q ss_pred HHHhhhHHHHHHhhhcccccc
Q 041273 306 SVSIMTGLFLLQNRAVSQKRQ 326 (362)
Q Consensus 306 ~~~~~~~~~~~~~~~~p~~~~ 326 (362)
.....+.....+.+.+|++|.
T Consensus 134 ~~~~~~~~~~~i~~~Fp~~RG 154 (591)
T PTZ00207 134 CMLFDLGAVVTVLSVFPSNRG 154 (591)
T ss_pred HHHHHHHHHHHHHHhChhhhH
Confidence 444455566677788886664
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.4e-05 Score=69.17 Aligned_cols=121 Identities=16% Similarity=0.186 Sum_probs=99.4
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 041273 227 LSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLS 306 (362)
Q Consensus 227 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (362)
.+-+..++|++++...+..++.+ ++.|.+.||+|.|..+.+|+..+..+.+++++....+ ...+.=.+++.++
T Consensus 101 ~~~e~~~iG~LFaskA~~qllvn-p~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~------~l~vAR~LQgvgs 173 (464)
T KOG3764|consen 101 LDRENTQIGLLFASKALVQLLVN-PFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYP------MLFVARSLQGVGS 173 (464)
T ss_pred ccccccchhHHHHHHHHHHHHhc-ccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhH------HHHHHHHHhhhhH
Confidence 56678889999999999999999 9999999999999999999999999999998887654 4555566777788
Q ss_pred HHhhhHHHHHHhhhcccccc-C-----------------CCC------CCChhHHHHHHHHHHHHHHHhhcc
Q 041273 307 VSIMTGLFLLQNRAVSQKRQ-G-----------------AGF------LPGNQMIFFILNLVEALGVILTFK 354 (362)
Q Consensus 307 ~~~~~~~~~~~~~~~p~~~~-~-----------------~~~------~~g~~~~f~~~~~~~~i~~~~~~~ 354 (362)
.....+-.+++++.+|++.. + .++ +.|++.+|.+++.++++...+.+.
T Consensus 174 A~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~ 245 (464)
T KOG3764|consen 174 AFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLL 245 (464)
T ss_pred HHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHh
Confidence 88888889999999995442 1 111 117899999999999998877664
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.14 E-value=8.1e-06 Score=62.31 Aligned_cols=98 Identities=16% Similarity=0.179 Sum_probs=84.2
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTL 80 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~ 80 (362)
+.+++.+.+.+++|.|+.++++.+...+-.. ..+-++.+.++.+-.+.|++.+...++ ..++.+..++++|++-.++.
T Consensus 52 ~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~-~~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~if 130 (156)
T PF05978_consen 52 ISCLFAPSIVNKLGPKWSMILGSLGYAIYIA-SFFYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIF 130 (156)
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHH
Confidence 4567889999999999999999999875444 346677889999999999999999888 89999999999999999999
Q ss_pred HHhhhhhhhhhhhhhhhhcC
Q 041273 81 STAWGTGLIIGPAVGGFLAQ 100 (362)
Q Consensus 81 ~~~~~~g~~~g~~~~~~l~~ 100 (362)
......+.++|.++.-.+.+
T Consensus 131 w~i~~~s~i~G~~~~~~~~~ 150 (156)
T PF05978_consen 131 WAIFQSSLIFGNLFLFFIFQ 150 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999888888877665543
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.5e-05 Score=66.62 Aligned_cols=99 Identities=12% Similarity=0.086 Sum_probs=75.3
Q ss_pred cccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 041273 225 GGLSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNV 304 (362)
Q Consensus 225 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (362)
+++++|+.|.+++.++..+.+.+.+ +..+.+.||+|.|+....+.++..+-.+...+....++. |..+.+.... .
T Consensus 42 ~~~~LS~~q~~ll~aiPil~GallR-l~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~--~~ll~~gll~--G 116 (417)
T COG2223 42 SDFGLSEGQKGLLVAIPILVGALLR-LPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPST--WQLLVIGLLL--G 116 (417)
T ss_pred cccCCCHHHHHHHHHHHHHHhHHHH-HHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCch--HHHHHHHHHH--h
Confidence 4489999999999999999999998 888999999999999999999888887777776655533 3333232222 2
Q ss_pred HHHHhhhHHHHHHhhhccccccCC
Q 041273 305 LSVSIMTGLFLLQNRAVSQKRQGA 328 (362)
Q Consensus 305 ~~~~~~~~~~~~~~~~~p~~~~~~ 328 (362)
...+.+.+.....++-+|++|++.
T Consensus 117 ~~GasFav~m~~~s~~fP~~~qG~ 140 (417)
T COG2223 117 LAGASFAVGMPNASFFFPKEKQGL 140 (417)
T ss_pred cccceehcccccccccCChhhhhH
Confidence 233345666788899999888753
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=8e-06 Score=83.93 Aligned_cols=99 Identities=15% Similarity=0.116 Sum_probs=81.8
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhh--------------------hhHHHHHHHHHHHhhhcCcchhH-
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLS--------------------VSFWMAIATRFLLGALNGLLGPI- 60 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~--------------------~~~~~l~~~r~l~G~~~~~~~~~- 60 (362)
+|+++.|+++||.++++.+..+.++.+++.+...+. ++.+.+++..++.|++.+...+.
T Consensus 276 ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 355 (1140)
T PRK06814 276 VGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPL 355 (1140)
T ss_pred HHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHH
Confidence 578889999998888777666666665555544442 67778888889999998887766
Q ss_pred HHHHHhhhccccchhhHHHHHHhhhhhhhhhhhhhhhhcC
Q 041273 61 KAYACEILRDQHKTLGLSTLSTAWGTGLIIGPAVGGFLAQ 100 (362)
Q Consensus 61 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 100 (362)
.+++.+.+|+++||+++|..+....+|..+++.+.+.+.+
T Consensus 356 ~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~ 395 (1140)
T PRK06814 356 FAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQA 395 (1140)
T ss_pred HHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998864
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0013 Score=60.21 Aligned_cols=245 Identities=13% Similarity=0.121 Sum_probs=132.9
Q ss_pred cchhhhhhcccCCchHHHHHHHHHHHHHHHHhhh--h-----------------------------hHHHHHHHHHHHhh
Q 041273 4 SVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLS--V-----------------------------SFWMAIATRFLLGA 52 (362)
Q Consensus 4 ~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~--~-----------------------------~~~~l~~~r~l~G~ 52 (362)
..+..+++||++|.+++-+....+.....++++. | +.|...+.-++.-+
T Consensus 76 ~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aEl 155 (491)
T PF03219_consen 76 TILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAEL 155 (491)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999998887777766666665542 0 12233333333344
Q ss_pred hcCc-chhH-HHHHHhhhccccchhhHHHHHHhhhhhhhhhhhhhhhhcC-ccccCC-cccccccccccccchhhHHHHH
Q 041273 53 LNGL-LGPI-KAYACEILRDQHKTLGLSTLSTAWGTGLIIGPAVGGFLAQ-PAEKYP-KAFSKESMFGKFPYFLPCLCMS 128 (362)
Q Consensus 53 ~~~~-~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-~~~~~~-~~~gw~~~~~~~~~~~~~~~~~ 128 (362)
-... .+.. ..+..|.++.+|-.|.++++..+.++|.+++..+..++.+ ..+..+ ....|.... .....+..
T Consensus 156 wgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~~~~l-----~~l~~~v~ 230 (491)
T PF03219_consen 156 WGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAWELSL-----NSLMGIVL 230 (491)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccHhHHH-----HHHHHHHH
Confidence 3333 3445 8889999999999999999999999999999888888775 111110 112232211 11111122
Q ss_pred HHHHHHHHHHhhcccccCCCCcCCccccccchhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHh
Q 041273 129 LFAFAVTIASCWIPETLHKHNEDGVSLDVSCDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDI 208 (362)
Q Consensus 129 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (362)
+.+.+.+....++.+.....+...++.+ .+.+++++....++.+.++|+|.+..+.+...++.....
T Consensus 231 ~~g~~i~~~~~~~~~~vl~~~~~~~~~~-------------~~kk~k~k~s~~es~k~l~kS~yL~~Ia~lvi~Ygi~in 297 (491)
T PF03219_consen 231 ILGIVIILLYRYMNKNVLTDPRFYPSAK-------------KKKKKKPKMSLKESFKLLLKSKYLLCIALLVIAYGISIN 297 (491)
T ss_pred HHHHHHHHHHHHHHHHccCccccchhhh-------------cccccCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 2222233333444332211111000000 000111222234567778888888887776666555444
Q ss_pred HHHHHHHhHhcccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHH
Q 041273 209 AYTEIFSLWAISPWKYGGLSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIA 269 (362)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~ 269 (362)
......-....+.+... -.++ .-.|-.....++..++.. ++++.+.+|+|-+....+.
T Consensus 298 LvE~~wK~~lk~~~~~~-~~ys-afmG~~~~~tGivtii~~-~l~~~iir~~GW~~~Alit 355 (491)
T PF03219_consen 298 LVEVVWKSQLKQLYPDP-NDYS-AFMGKFSSWTGIVTIIMM-FLSSNIIRRFGWRTAALIT 355 (491)
T ss_pred HHHHHHHHHHHHHCCCc-hHHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHh
Confidence 44333332222211000 1111 113555666677777776 7889999999977766554
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.7e-05 Score=69.95 Aligned_cols=98 Identities=16% Similarity=0.328 Sum_probs=83.2
Q ss_pred ccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHhhhcCcchhH-HHHHHhhhcc-------cc
Q 041273 3 TSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSV--SFWMAIATRFLLGALNGLLGPI-KAYACEILRD-------QH 72 (362)
Q Consensus 3 ~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~-------~~ 72 (362)
+.+++.++++|+|+|+++.++.++.+++.++..+.+ +.+.+++..++.+++.+...+. .++++|..+. ++
T Consensus 288 ~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~ 367 (467)
T COG2211 288 GLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRR 367 (467)
T ss_pred HHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCc
Confidence 467889999999999999999999999999988876 7888888899999999988887 8888888762 22
Q ss_pred chhhHHHHHHhhhhhhhhhhhhhhhhcC
Q 041273 73 KTLGLSTLSTAWGTGLIIGPAVGGFLAQ 100 (362)
Q Consensus 73 r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 100 (362)
-|...+......=+|..++..+.++..+
T Consensus 368 eGi~~s~~tF~~K~g~ala~~~~g~~L~ 395 (467)
T COG2211 368 EGIVYSGMTFFRKLGLALAGFIPGWILG 395 (467)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667778888888888888888888876
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=98.03 E-value=4.7e-05 Score=70.32 Aligned_cols=123 Identities=16% Similarity=0.136 Sum_probs=85.4
Q ss_pred ccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 041273 226 GLSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVL 305 (362)
Q Consensus 226 ~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (362)
+++++..+.|.+.+...++..+++ +..+++.||+|+|+.+..+.++..+..++.++..... .....+.-.+.+..
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~-~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~----~~~l~~~r~~~G~~ 144 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQ-IPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGG----IALVVFCRVIQGLA 144 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHH-cchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcC----chHHHHHHHHHHHh
Confidence 578999999999999999999998 8999999999999999988887777665554332111 11233444455556
Q ss_pred HHHhhhHHHHHHhhhccccccCCC-----------------------CC-CChhHHHHHHHHHHHHHHHhhc
Q 041273 306 SVSIMTGLFLLQNRAVSQKRQGAG-----------------------FL-PGNQMIFFILNLVEALGVILTF 353 (362)
Q Consensus 306 ~~~~~~~~~~~~~~~~p~~~~~~~-----------------------~~-~g~~~~f~~~~~~~~i~~~~~~ 353 (362)
.....|....++.+..|+++.+.. .. .|.+.+|.+.+++.++..++.+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~ 216 (465)
T TIGR00894 145 QGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWF 216 (465)
T ss_pred cccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHH
Confidence 666778888899998884332110 01 2567778887777666554443
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.9e-05 Score=68.59 Aligned_cols=96 Identities=18% Similarity=0.161 Sum_probs=73.8
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTL 80 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~ 80 (362)
+|.+..+++.||+|+|+.+.++..+..++.++....++...+ ..-++.|++.+...|. .+...+..|++ .+++.++.
T Consensus 193 iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~-~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~ 270 (310)
T TIGR01272 193 VGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAM-WFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL 270 (310)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH
Confidence 567889999999999999988888888777666555543333 3455788888888888 88888888754 34555664
Q ss_pred HHhhhhhhhhhhhhhhhhcC
Q 041273 81 STAWGTGLIIGPAVGGFLAQ 100 (362)
Q Consensus 81 ~~~~~~g~~~g~~~~~~l~~ 100 (362)
....+|..++|.+.|.+.|
T Consensus 271 -~~~~~Gg~i~P~l~G~lad 289 (310)
T TIGR01272 271 -CLAIVGGAIVPLLQGSLAD 289 (310)
T ss_pred -HHHHhcchHHHHHHHHHHH
Confidence 5677999999999999988
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00033 Score=64.04 Aligned_cols=97 Identities=12% Similarity=0.005 Sum_probs=64.7
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH----hhchhHHHHHH-HHHHHHHHHHHHHHHhhhh-----------hh
Q 041273 227 LSYSTENAGQVLAISGFSLLVFQLTLYPYVER----MIGPIIITRIA-GVLSIPLLTSYTYIAMLSG-----------FS 290 (362)
Q Consensus 227 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~----~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----------~~ 290 (362)
+|.++...+.+.....+.+.+.+ ++.|+++| |+|||+.+..+ .....+++.++++...... ..
T Consensus 34 lg~~~~~~~~i~~~~~l~~~i~~-Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~ 112 (477)
T TIGR01301 34 LGIPHAWASIIWLCGPLSGLLVQ-PLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPR 112 (477)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHH-hHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhH
Confidence 68999999999999999999998 99999999 59999988765 5555555566655432110 01
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcccc
Q 041273 291 LALLINCASVMKNVLSVSIMTGLFLLQNRAVSQK 324 (362)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 324 (362)
......+...+.........+...+++.|..|++
T Consensus 113 ~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~ 146 (477)
T TIGR01301 113 AIIVFVVGFWILDVANNMLQGPCRAFLADLTGGD 146 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCch
Confidence 1112222222333344445566788999998844
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=3.1e-05 Score=71.21 Aligned_cols=99 Identities=14% Similarity=0.162 Sum_probs=67.3
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHhhhcCcchhH-HHHHHhhhcc-------c
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSV--SFWMAIATRFLLGALNGLLGPI-KAYACEILRD-------Q 71 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~-------~ 71 (362)
++.+++++++||+|+|+.+..+....++...+..+.+ +.+.+++.-++.|++.+...+. .++++|..+. +
T Consensus 278 ig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r 357 (460)
T PRK11462 278 IGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKR 357 (460)
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCC
Confidence 3567899999999999987765554444333333332 2333444456667776666665 7788888772 2
Q ss_pred cchhhHHHHHHhhhhhhhhhhhhhhhhcC
Q 041273 72 HKTLGLSTLSTAWGTGLIIGPAVGGFLAQ 100 (362)
Q Consensus 72 ~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 100 (362)
+.+..++.......+|..+|+.+++.+.+
T Consensus 358 ~~g~~~a~~~f~~Klg~alg~~i~g~iL~ 386 (460)
T PRK11462 358 LTGISFAGTLFVLKLGLAFGGALIGWMLA 386 (460)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23455677778899999999999998876
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00027 Score=63.66 Aligned_cols=89 Identities=8% Similarity=0.029 Sum_probs=70.8
Q ss_pred cCCCchh-hHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 041273 227 LSYSTEN-AGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVL 305 (362)
Q Consensus 227 ~g~s~~~-~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (362)
+|++..+ .|.+.+....+-.+.+ +..+++.||+|.|+.+..+.+...+..++.++..... .+.+.-++.+.+
T Consensus 56 lglT~~qv~G~I~s~F~ysYal~q-Ip~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~------~L~i~R~llGva 128 (511)
T TIGR00806 56 LNFTEETVTNEIIPVLPYSHLAVL-VPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVW------HMQLMEVFYSVT 128 (511)
T ss_pred cCCCHHHhcchHHHHHHHHHHHHH-HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence 8999999 9999999999999998 9999999999999999999998888888777764321 233444444445
Q ss_pred HHHhhhHHHHHHhhhccc
Q 041273 306 SVSIMTGLFLLQNRAVSQ 323 (362)
Q Consensus 306 ~~~~~~~~~~~~~~~~p~ 323 (362)
..... +...++.+.+|+
T Consensus 129 EA~~~-A~~syI~~WfP~ 145 (511)
T TIGR00806 129 MAARI-AYSSYIFSLVPP 145 (511)
T ss_pred HHHHH-HHHHHHHHHCCH
Confidence 56665 778888888883
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00012 Score=48.54 Aligned_cols=69 Identities=13% Similarity=0.205 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 041273 197 TIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVL 272 (362)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~ 272 (362)
-..+++......+...++|.|+.+ .|+|+.++|.+.++..+...++. ++.+.+.||.++++........
T Consensus 6 k~~yf~~f~~~g~~~Pfl~~~~~~------~Gl~~~~iGil~~i~~~~~~~~~-pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 6 KAFYFFYFAALGCLYPFLPLYLKQ------LGLSPSQIGILSAIRPLIRFLAP-PLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHHHHHHHhhhhHhhhh------cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCccHHHHHHHHH
Confidence 344555555656666666767655 69999999999999999999998 9999999999998887655443
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=97.97 E-value=2.1e-07 Score=85.56 Aligned_cols=130 Identities=22% Similarity=0.351 Sum_probs=84.7
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHh--h--hh-h-----HHHHHHHHHHHhhhcCcchhH-HHHHHhhhcc
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFG--L--SV-S-----FWMAIATRFLLGALNGLLGPI-KAYACEILRD 70 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~--~--~~-~-----~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~ 70 (362)
++.+....+.||+|||+.++.+....+++.+..+ . .+ + ...+...............+. ..+..|.+|.
T Consensus 301 ~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt 380 (451)
T PF00083_consen 301 LGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPT 380 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccceeeeeccccccccccccccccccccccc
Confidence 3456677999999999999999988888877664 1 11 1 112222221111112123455 7888999999
Q ss_pred ccchhhHHHHHHhhhhhhhhhhhhhhhhcCccccCCcccc-cccccccccchhhHHHHHHHHH-HHHHHHhhcccccCCC
Q 041273 71 QHKTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFS-KESMFGKFPYFLPCLCMSLFAF-AVTIASCWIPETLHKH 148 (362)
Q Consensus 71 ~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~g-w~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~~~~~ 148 (362)
+.|.++.++......++..+++.+...+.+ ..+ +.. + .+.+.+++ ...+..+++||++.+.
T Consensus 381 ~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~-------~~~~~~~-~---------~i~~~~~~i~~i~~~~~lpET~g~~ 443 (451)
T PF00083_consen 381 KVRSTGIGLSYAVGRIGGFIIPFLFPYLFN-------NLGGWGV-F---------LIFAGVCLIAIIFVYFFLPETKGKT 443 (451)
T ss_pred cccccccccccccccccccccccccccccc-------ccccccc-c---------hhhHHHHHHHHhheeEEEeeCCCCC
Confidence 999999999999999999988888777765 222 111 1 23333333 3456667899987643
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=97.95 E-value=4.5e-05 Score=57.32 Aligned_cols=108 Identities=10% Similarity=0.120 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhh
Q 041273 240 ISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMTGLFLLQNR 319 (362)
Q Consensus 240 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (362)
...++..+++ +..+++.||++||+.+..+.....++.+......+ .+. ......+.+.......+....+..|
T Consensus 6 ~~~~~~~~~~-~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~g~~~~~~~~~~~~~~~~ 78 (141)
T TIGR00880 6 GYALGQLIYS-PLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSN-----ITV-LIIARFLQGFGAAFALVAGAALIAD 78 (141)
T ss_pred eehhHHHHHH-hhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcc-----HHH-HHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3455666666 88899999999999998888777766655544322 111 2222333333444556777888888
Q ss_pred hccccccCCCC-----------------------CCChhHHHHHHHHHHHHHHHhhcc
Q 041273 320 AVSQKRQGAGF-----------------------LPGNQMIFFILNLVEALGVILTFK 354 (362)
Q Consensus 320 ~~p~~~~~~~~-----------------------~~g~~~~f~~~~~~~~i~~~~~~~ 354 (362)
..|+++.+... ..|++..|.+.+.+.+++.+..++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (141)
T TIGR00880 79 IYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAF 136 (141)
T ss_pred HCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhh
Confidence 88854432110 014567788887777777666554
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.93 E-value=6.9e-06 Score=72.24 Aligned_cols=135 Identities=17% Similarity=0.134 Sum_probs=97.5
Q ss_pred ccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhH-H---HHHHHHHHHhhhc--CcchhHHHHHHhhhccccchhh
Q 041273 3 TSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSF-W---MAIATRFLLGALN--GLLGPIKAYACEILRDQHKTLG 76 (362)
Q Consensus 3 ~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~-~---~l~~~r~l~G~~~--~~~~~~~~~i~~~~~~~~r~~~ 76 (362)
|..+...+.|+.|||+..+-+.+++.+..+..+...|. . .+++.-.+..+.. |.......+-+|.+|.+-|+..
T Consensus 364 Gyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~ 443 (538)
T KOG0252|consen 364 GYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTC 443 (538)
T ss_pred ceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhh
Confidence 44567789999999999999999999999988887762 1 1122222222211 1122235677899999999999
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHhhcccccCCC
Q 041273 77 LSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLHKH 148 (362)
Q Consensus 77 ~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 148 (362)
.|+..+..-+|.++|...-.++.+.. ++...|-|.++ ++.+.+.++..+...++||+..+.
T Consensus 444 hGIsAA~GK~GAivg~~~F~~~t~~~--yp~~~g~~~v~---------~i~~~~~~~gi~~T~l~pEtk~~~ 504 (538)
T KOG0252|consen 444 HGISAASGKAGAIVGAFGFLYLTDHN--YPPNIGVRNVF---------IILAGCMLLGILFTLLIPETKGKS 504 (538)
T ss_pred hhHHHHhccchHHHHHHHhhHhhhcc--CCccccchHHH---------HHHHHHHHHhHheeEEeecccccC
Confidence 99999999999999998888887632 44445555555 677777777777788899887653
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.014 Score=52.77 Aligned_cols=51 Identities=14% Similarity=0.059 Sum_probs=35.1
Q ss_pred HHhhhcCcchhH-HHHHHhhhccccchhhHHHHHHhhhhhhhhhhhhhhhhc
Q 041273 49 LLGALNGLLGPI-KAYACEILRDQHKTLGLSTLSTAWGTGLIIGPAVGGFLA 99 (362)
Q Consensus 49 l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 99 (362)
+.-+..+..-.+ -...-...++++++.|..-...+.+.|..++-.+--.+.
T Consensus 127 ~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvFlaln 178 (544)
T PF13000_consen 127 ILVFLCATQDIAVDGWALTMLSPENVGYASTCQTVGQTAGYFLSFTVFLALN 178 (544)
T ss_pred HHHHHHccCCceeehhhhhhcChhhcchHHHHHHhHhhhhHHHHHHHHHhhC
Confidence 444445555444 666677778888888888888888888877766655554
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00063 Score=62.19 Aligned_cols=130 Identities=15% Similarity=0.163 Sum_probs=99.4
Q ss_pred ccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 041273 226 GLSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVL 305 (362)
Q Consensus 226 ~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (362)
.+.+++.+-+++++....+.++++ +..+++.||+|.|+++..+.++.++..++.++....... ...+.=.+++..
T Consensus 67 ~~~ws~~~k~~i~ss~~~G~i~~~-iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~----~~~~~R~lqGl~ 141 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWGYILGQ-IPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFY----LLLVLRFLQGLG 141 (466)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHH-cCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcch----hhHHHHHHhHHH
Confidence 588999999999999999999998 888999999999999999999999999988888764422 334555555666
Q ss_pred HHHhhhHHHHHHhhhccc-cccC--C---------------------CCCCChhHHHHHHHHHHHHHHHhhcccccccc
Q 041273 306 SVSIMTGLFLLQNRAVSQ-KRQG--A---------------------GFLPGNQMIFFILNLVEALGVILTFKPFLIQR 360 (362)
Q Consensus 306 ~~~~~~~~~~~~~~~~p~-~~~~--~---------------------~~~~g~~~~f~~~~~~~~i~~~~~~~~~l~~~ 360 (362)
....+|+...+..+-.|. +|.. + ....|.+.+|.+.+++.++-.++.+..+...|
T Consensus 142 ~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P 220 (466)
T KOG2532|consen 142 QGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSP 220 (466)
T ss_pred HhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 677788888888888882 2220 0 01137889999999998887776555444444
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.003 Score=59.15 Aligned_cols=85 Identities=12% Similarity=-0.037 Sum_probs=65.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 041273 232 ENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMT 311 (362)
Q Consensus 232 ~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (362)
.+.+++.+...++..+++ +..++++|++|||+.+..+.+...++.++..+..+.. .+.++-.+.+++......
T Consensus 89 ~~~s~~~s~~~lga~~g~-l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~------~l~~GR~l~G~g~G~~~~ 161 (513)
T KOG0254|consen 89 VRQGLLTSILNLGALVGS-LLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWY------QLIVGRILTGLGVGGASV 161 (513)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHH------HHHHHHHHhccchhhhhh
Confidence 355899999999999998 9999999999999999999999999888877766322 333444444445555556
Q ss_pred HHHHHHhhhccc
Q 041273 312 GLFLLQNRAVSQ 323 (362)
Q Consensus 312 ~~~~~~~~~~p~ 323 (362)
....+++|..|.
T Consensus 162 ~~piy~sEiap~ 173 (513)
T KOG0254|consen 162 LAPVYISEIAPA 173 (513)
T ss_pred cchhhHhhcCCh
Confidence 678889999885
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.003 Score=52.47 Aligned_cols=101 Identities=14% Similarity=0.041 Sum_probs=66.8
Q ss_pred ccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHH
Q 041273 224 YGGLSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSG--FSLALLINCASVM 301 (362)
Q Consensus 224 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 301 (362)
++.+|+|.+|...+-....++..++ +..|.+.|+.|++..+.+|.....+++..+........ ...|.. .+...+
T Consensus 29 k~~l~~sq~~l~~l~~~~~~G~~~G--~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~-~~~~~l 105 (250)
T PF06813_consen 29 KSRLGYSQSQLNTLSTAGDIGSYFG--ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLM-CLFLFL 105 (250)
T ss_pred HHHhCCCHHHHHHHHHHHHHHhhcc--HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHH-HHHHHH
Confidence 3448999999998888878887764 78899999999999999999999998877654433221 122322 222222
Q ss_pred HHHHHHHhhhHHHHHHhhhccccccC
Q 041273 302 KNVLSVSIMTGLFLLQNRAVSQKRQG 327 (362)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~p~~~~~ 327 (362)
.+........+...-..+.+|++|..
T Consensus 106 ~~~s~~~~~ta~lvt~~~NFP~~RG~ 131 (250)
T PF06813_consen 106 GGNSSCWFNTASLVTCVRNFPRSRGT 131 (250)
T ss_pred HcccHHHhhhHHHHHHHHhCccccCc
Confidence 22222223344444555788987764
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0058 Score=53.06 Aligned_cols=205 Identities=14% Similarity=0.082 Sum_probs=104.7
Q ss_pred chhhhhhc-----ccCCchHHHH-HHHHHHHHHHHHhh-----------hhhHHHHHHHHHHHhhhcCcchhH-HHHHHh
Q 041273 5 VLWGMVAD-----RCGRKPVIII-GCITVVIFNTLFGL-----------SVSFWMAIATRFLLGALNGLLGPI-KAYACE 66 (362)
Q Consensus 5 ~~~G~l~D-----r~Grr~~l~~-~~~~~~~~~~~~~~-----------~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~ 66 (362)
+.|.++.| |+||||.-++ +..+.+....+.+. .++...+...-++.-+..++.-.+ -...-.
T Consensus 81 llWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALt 160 (510)
T KOG3574|consen 81 LLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALT 160 (510)
T ss_pred HHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 46888999 9999986554 34443333333332 123333444456666677777666 788888
Q ss_pred hhccccchhhHHHHHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchh-h--HHHHHHHHHHHHHHHhhccc
Q 041273 67 ILRDQHKTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFL-P--CLCMSLFAFAVTIASCWIPE 143 (362)
Q Consensus 67 ~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~e 143 (362)
..++++.+.+......+.+.|..+|-.+--.+.....-..-..+|.. ..++.. . ...-+.+.++.-....+.++
T Consensus 161 mLs~e~lgyaST~q~Vg~~~GyfL~~~ifLaL~s~dF~N~y~rs~P~---~~g~ItL~gy~~fwg~~~~vat~Lv~~~kk 237 (510)
T KOG3574|consen 161 MLSRENLGYASTCQSVGQTAGYFLGNVVFLALESPDFCNTYLRSIPL---DQGFITLAGYLWFWGALFIVATTLVALLKK 237 (510)
T ss_pred hcCHhhcCchhHHHHHHHhhhHHhhcceeeEecChhhhhHHHhcCcC---ccceEEhhHHHHHHHHHHHHHHHHHHHhcC
Confidence 88889988887777777777776665544333221000000112210 000000 0 01122222222222233333
Q ss_pred ccCCCCcCCccccccchhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhccccc
Q 041273 144 TLHKHNEDGVSLDVSCDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWK 223 (362)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (362)
+++.+..++.+.. .++..+..+++++-|.++.+..+....-..+.+.....+.-+.+
T Consensus 238 e~~~~~~~e~~~~--------------------i~~~yk~l~~vLklk~v~~la~i~lt~K~gf~a~da~t~LkLle--- 294 (510)
T KOG3574|consen 238 ENDESVDEELELG--------------------IHESYKLLRDVLKLKSVRWLAGILLTGKLGFQAADALTSLKLLE--- 294 (510)
T ss_pred CCchhhhhhhhcC--------------------HHHHHHHHHHHHcCccHHHHHHHHHHHHHHhhhhhhccchHHHH---
Confidence 2222211111100 01122345666777777776666666666666666666655544
Q ss_pred ccccCCCchhhHHHH
Q 041273 224 YGGLSYSTENAGQVL 238 (362)
Q Consensus 224 ~~~~g~s~~~~g~~~ 238 (362)
.|.+.++.+++.
T Consensus 295 ---~Gv~ke~Lal~~ 306 (510)
T KOG3574|consen 295 ---HGVPKEELALIA 306 (510)
T ss_pred ---cCCChhHheeee
Confidence 588888877654
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00021 Score=68.27 Aligned_cols=101 Identities=14% Similarity=0.085 Sum_probs=75.6
Q ss_pred ccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhh---------------
Q 041273 224 YGGLSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSG--------------- 288 (362)
Q Consensus 224 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 288 (362)
.++++++..+.|++.+.+.++..+.. ++.+++.||.+||+.+.++.++.+++.+++.+.+...+
T Consensus 60 ek~F~lss~~~G~i~s~~~i~~~~~~-i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~ 138 (633)
T TIGR00805 60 ERRFKLSTSSSGLINGSYEIGNLLLI-IFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLS 138 (633)
T ss_pred hhhhCCCCCcceeeeehhhHHHHHHH-HHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccccccccc
Confidence 34489999999999999999999987 88889999999999999999998888777655431100
Q ss_pred ------------------------------hhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhccccc
Q 041273 289 ------------------------------FSLALLINCASVMKNVLSVSIMTGLFLLQNRAVSQKR 325 (362)
Q Consensus 289 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 325 (362)
...+..+++.-++.+++....++...+++.|.+|.++
T Consensus 139 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~ 205 (633)
T TIGR00805 139 SANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKN 205 (633)
T ss_pred ccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccc
Confidence 0123344455666666666677888889999888444
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0011 Score=62.14 Aligned_cols=94 Identities=20% Similarity=0.201 Sum_probs=74.8
Q ss_pred hhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHH---HHHHHHHHhhhcCcc-hhHHHHHHhhhccccchhhHHHHH
Q 041273 6 LWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWM---AIATRFLLGALNGLL-GPIKAYACEILRDQHKTLGLSTLS 81 (362)
Q Consensus 6 ~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~---l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~ 81 (362)
..+...|++|||.....+.....++.+..++..+... ..+...+...+.+.. .....+.+|.+|...|..+.+..+
T Consensus 369 ~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~ 448 (521)
T KOG0255|consen 369 RNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAIS 448 (521)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 3467889999999999999999999999988775443 344444444444443 334899999999999999999999
Q ss_pred Hhhhhhhhhhhhhhhhhc
Q 041273 82 TAWGTGLIIGPAVGGFLA 99 (362)
Q Consensus 82 ~~~~~g~~~g~~~~~~l~ 99 (362)
....+|.+++|.+.....
T Consensus 449 ~~~~~~~i~ap~~~~~~~ 466 (521)
T KOG0255|consen 449 AAARLGSILAPLFPLLLR 466 (521)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999998886554
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00074 Score=60.39 Aligned_cols=106 Identities=13% Similarity=0.154 Sum_probs=79.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhh---------hHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccc---cchhhHHHHHHhh
Q 041273 18 PVIIIGCITVVIFNTLFGLSV---------SFWMAIATRFLLGALNGLLGPI-KAYACEILRDQ---HKTLGLSTLSTAW 84 (362)
Q Consensus 18 ~~l~~~~~~~~~~~~~~~~~~---------~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~---~r~~~~~~~~~~~ 84 (362)
|+++++.++..+|.++..++. +.+.++++-.+.++|.|..-|. .++.+|-++++ +|.+.+.++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 577888899999988855442 2357888889999999999888 99999999865 4677888999999
Q ss_pred hhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHh
Q 041273 85 GTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASC 139 (362)
Q Consensus 85 ~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (362)
++|..+++.+.+++.+ ..||...| .+.++..++.++...
T Consensus 82 n~G~~~~~~~~~~i~~-------~~~~~~~f---------~i~~~~~~~~~~~f~ 120 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQ-------NYGWFLGF---------GIPAIGMLLALIVFL 120 (372)
T ss_dssp HHHHHHHHHCCCHHHH-------CS-HHHHH---------HHHHHHHHHHHHHHH
T ss_pred hhhhHhhcccchhhcc-------ccchhhhh---------hHHHHHHHHHHHHHH
Confidence 9999999999999987 56665554 555554444444433
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.11 Score=47.07 Aligned_cols=249 Identities=11% Similarity=0.059 Sum_probs=133.3
Q ss_pred ccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhh---------------h-----------------hHHHHHHHHHHH
Q 041273 3 TSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLS---------------V-----------------SFWMAIATRFLL 50 (362)
Q Consensus 3 ~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~---------------~-----------------~~~~l~~~r~l~ 50 (362)
..++..++.+++.|.+++-..+..+....+++++. + +.|..-+.-++.
T Consensus 78 f~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~a 157 (509)
T COG3202 78 FTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMA 157 (509)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHH
Confidence 34677889999999999888877777777777653 1 113333333333
Q ss_pred hhhcCc-chhH-HHHHHhhhccccchhhHHHHHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHH
Q 041273 51 GALNGL-LGPI-KAYACEILRDQHKTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMS 128 (362)
Q Consensus 51 G~~~~~-~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~ 128 (362)
-+-.+. .+-. .....|.+..+|-.|.+++++.+.+++..++..+..++.+..+......- ....+....+..
T Consensus 158 ELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~------~~~~~~~~~vi~ 231 (509)
T COG3202 158 ELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFK------DLLLQILFIVIV 231 (509)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHH------HHHHHHHHHHHH
Confidence 343333 2335 77889999999999999999999999999999888888763221100000 000111112222
Q ss_pred HHHHHHHHHHhhcc----cccCCCCcC-CccccccchhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHH
Q 041273 129 LFAFAVTIASCWIP----ETLHKHNED-GVSLDVSCDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVF 203 (362)
Q Consensus 129 ~~~~~~~~~~~~~~----e~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (362)
..+++.+...+++. ++++...++ +++++ +..+-...+..+.+.|+|.++...+...++
T Consensus 232 ~~~~i~~~l~~~~~r~il~~~~f~~~~~~kk~~-----------------~k~k~~~~~s~k~i~~SkyL~~ial~vl~Y 294 (509)
T COG3202 232 ILGIIAILLYRYINRNVLTDPLFYLRAKKKKKK-----------------KKLKLGLIESFKMILRSKYLGAIALLVLAY 294 (509)
T ss_pred HHHHHHHHHHHHHHhhcccCcchhHHHhccccc-----------------ccccCcHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33333444444432 233211011 11000 011112334566677888777766665555
Q ss_pred HHHHhHHHHHHHhHhcccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHH
Q 041273 204 SLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPL 276 (362)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~ 276 (362)
+.+........-.-....... .+--..-.|......++..++......+.+.+|.|-.....+.-++..+.
T Consensus 295 ~v~inLvE~~wKs~ik~~~~~--~~~~~~f~~~~~~~tgvv~~v~~~~~~s~~ir~~GW~~~AlitPiv~lit 365 (509)
T COG3202 295 GVSINLVEGVWKSGIKELYPT--TNEYTAFMGRFQIWTGVVSLVVFLFPGSNLIRRVGWFTGALITPLVMLIT 365 (509)
T ss_pred HHHHHHHHHHHHHhHHHhcCC--hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 544333322211111111000 00011123455666677756666688889999988766555444444444
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.045 Score=47.57 Aligned_cols=51 Identities=12% Similarity=0.017 Sum_probs=43.7
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH
Q 041273 227 LSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLT 278 (362)
Q Consensus 227 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~ 278 (362)
+|++..+++.++....+..++.. .+.|.+.||+|||+......++..++.+
T Consensus 64 yg~~~~qIa~Lf~~Gf~Ss~i~g-~~~G~laD~~Grk~~cl~~cily~~scl 114 (354)
T PF05631_consen 64 YGFSEHQIAILFVAGFASSAIFG-TFVGSLADRYGRKKACLLFCILYSLSCL 114 (354)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 79999999999988888888887 8899999999999988777777666654
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0057 Score=53.89 Aligned_cols=96 Identities=25% Similarity=0.326 Sum_probs=81.8
Q ss_pred chhhhhhc-ccCCchHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHH
Q 041273 5 VLWGMVAD-RCGRKPVIIIGCITVVIFNTLFGL---SVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLST 79 (362)
Q Consensus 5 ~~~G~l~D-r~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~ 79 (362)
...|++.. |.++|+.-.+++....++..+..+ ..+.+.+...-++.|++.|.+... .+.+.|..++++-|..+|.
T Consensus 262 ~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~ 341 (403)
T PF03209_consen 262 LLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGA 341 (403)
T ss_pred HHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHH
Confidence 44566655 678888888888887777666544 457888999999999999999888 9999999999999999999
Q ss_pred HHHhhhhhhhhhhhhhhhhcC
Q 041273 80 LSTAWGTGLIIGPAVGGFLAQ 100 (362)
Q Consensus 80 ~~~~~~~g~~~g~~~~~~l~~ 100 (362)
+.....++..+|-.+++.+.|
T Consensus 342 WGaaQA~A~Glg~~~GG~~~D 362 (403)
T PF03209_consen 342 WGAAQAIARGLGTFLGGALRD 362 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.039 Score=50.92 Aligned_cols=127 Identities=13% Similarity=0.088 Sum_probs=85.8
Q ss_pred cccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 041273 225 GGLSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNV 304 (362)
Q Consensus 225 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (362)
.+.+....+.+.+.+++.++-+++. +.++.+.||++..+.+....+...+..++..+.++.+ ..++.-++.+.
T Consensus 74 edl~~~~~~l~~~~t~F~v~Yii~~-~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~------~~ialr~llGl 146 (495)
T KOG2533|consen 74 EDLKLVGNQLGVLDTVFYVGYIIGQ-FPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFP------GLIALRFLLGL 146 (495)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHH-hhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhH------HHHHHHHHHHH
Confidence 3467778889999999999999998 8999999999955555444444333333333322222 23344445555
Q ss_pred HHHHhhhHHHHHHhhhccccccC-----------------------------CCCCCChhHHHHHHHHHHHHHHHhhccc
Q 041273 305 LSVSIMTGLFLLQNRAVSQKRQG-----------------------------AGFLPGNQMIFFILNLVEALGVILTFKP 355 (362)
Q Consensus 305 ~~~~~~~~~~~~~~~~~p~~~~~-----------------------------~~~~~g~~~~f~~~~~~~~i~~~~~~~~ 355 (362)
+..+..|....++..-+.+++++ ..-..|+++.|.+-+++.+...++.++
T Consensus 147 ~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~- 225 (495)
T KOG2533|consen 147 FESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFF- 225 (495)
T ss_pred HhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEE-
Confidence 77777888888888877733331 122347899999999999998888775
Q ss_pred cccc
Q 041273 356 FLIQ 359 (362)
Q Consensus 356 ~l~~ 359 (362)
++|+
T Consensus 226 ~lp~ 229 (495)
T KOG2533|consen 226 FLPD 229 (495)
T ss_pred EecC
Confidence 4543
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0074 Score=52.17 Aligned_cols=96 Identities=16% Similarity=0.097 Sum_probs=72.7
Q ss_pred cchhhhhhcc-cCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhc-cccchhhHHHH
Q 041273 4 SVLWGMVADR-CGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILR-DQHKTLGLSTL 80 (362)
Q Consensus 4 ~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~-~~~r~~~~~~~ 80 (362)
++....+++| -++|+..+.....+.++.+.+.+.+.-..+.- -++.|+|.|...|. ..++.+..+ +++-++..++.
T Consensus 260 ~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgma 338 (395)
T COG2807 260 ALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMA 338 (395)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHh
Confidence 4556677774 56788888888888888887777764333333 48999998887777 899988886 55556666777
Q ss_pred HHhhhhhhhhhhhhhhhhcC
Q 041273 81 STAWGTGLIIGPAVGGFLAQ 100 (362)
Q Consensus 81 ~~~~~~g~~~g~~~~~~l~~ 100 (362)
+....+=..+||.+.|++-|
T Consensus 339 Qg~GYllAa~GP~l~G~lhD 358 (395)
T COG2807 339 QGVGYLLAAFGPWLFGFLHD 358 (395)
T ss_pred hhhhHHHHhhhhhhHhHHHH
Confidence 88777778889999999988
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.028 Score=51.32 Aligned_cols=154 Identities=10% Similarity=0.080 Sum_probs=94.0
Q ss_pred cccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHH
Q 041273 186 SLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIII 265 (362)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~ 265 (362)
+++.+++.........++........+++--++++ .+-.+...|..-...-.+.++. .+.+.++.+|+|+-++
T Consensus 366 ~~~~s~~~llff~~av~mG~g~~lv~tFLfWHled------~~~~~~LfGv~~a~~~~gEI~~-~ffs~klI~kiGHv~v 438 (618)
T KOG3762|consen 366 KVFASPHILLFFFVAVVMGAGVGLVFTFLFWHLED------LGGIKTLFGVVSALCHAGEILF-YFFSFKLIEKIGHVNV 438 (618)
T ss_pred HHhcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhh------cCCcceeeeehhhhhccchHHH-HHHHHHHHHHhcccce
Confidence 56777777766555555544444443344222222 4555666676555555555555 5889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhccc-----------------cccCC
Q 041273 266 TRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMTGLFLLQNRAVSQ-----------------KRQGA 328 (362)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-----------------~~~~~ 328 (362)
+..++.+...=++.+.++.+.+ .....-.+.++.-...+.+..++++..+|. ++.-+
T Consensus 439 ~~lgLa~~~~Rf~~~S~L~n~W------~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~G 512 (618)
T KOG3762|consen 439 MYLGLACNVGRFLYYSYLQNPW------MVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLG 512 (618)
T ss_pred eeehhhHHHHHHHHHHHhcCch------heeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchh
Confidence 9988888777666665554322 122233344445566667778888888882 22222
Q ss_pred CCCC-------ChhHHHHHHHHHHHHHHHhh
Q 041273 329 GFLP-------GNQMIFFILNLVEALGVILT 352 (362)
Q Consensus 329 ~~~~-------g~~~~f~~~~~~~~i~~~~~ 352 (362)
.... |.+..|..+++.+++.+++.
T Consensus 513 slIGG~~v~~fg~~ttf~~~giAcl~~l~~~ 543 (618)
T KOG3762|consen 513 SLIGGFVVERFGARTTFRIFGIACLVTLALF 543 (618)
T ss_pred hhhhhhhheeehhHHHHHHHHHHHHHHHHHH
Confidence 2222 46778888877777665543
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.014 Score=53.35 Aligned_cols=92 Identities=18% Similarity=0.312 Sum_probs=82.3
Q ss_pred hhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHHHHhhhh
Q 041273 8 GMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTLSTAWGT 86 (362)
Q Consensus 8 G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~ 86 (362)
+.+...+|-|+++..|+....+.....+++++.|+.+....+.++.... .|+ .+.++.+.+++++|+++++.+....+
T Consensus 299 ~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~~~~-~pa~~s~~s~~v~~~e~g~v~~~is~i~~l 377 (463)
T KOG2816|consen 299 PLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALAGIV-FPAIRAFASILVSPEEQGKVFGIISGIEGL 377 (463)
T ss_pred HHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhcch-hHHHHhHHHhhcccccccchhhHHHHHHHH
Confidence 4777788999999999999999999999999999999998888876554 455 99999999999999999999999999
Q ss_pred hhhhhhhhhhhhcC
Q 041273 87 GLIIGPAVGGFLAQ 100 (362)
Q Consensus 87 g~~~g~~~~~~l~~ 100 (362)
...++|.+-+.+..
T Consensus 378 ~~~~~~~~~~~i~~ 391 (463)
T KOG2816|consen 378 SGVVSPALYGNIFA 391 (463)
T ss_pred hhhhhHHHHHHHHH
Confidence 99999999888754
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.048 Score=45.07 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=18.1
Q ss_pred chhhhcccccchhHHHHHHHHHHH
Q 041273 181 ATAKKSLMKNWPFISSTIVYCVFS 204 (362)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~ 204 (362)
+.+..+.+|++..+...+.+....
T Consensus 84 ~~s~~~~LK~K~tw~w~~~Yg~wL 107 (267)
T PF07672_consen 84 KPSYKSILKEKETWKWILIYGIWL 107 (267)
T ss_pred cchHHHHHccchHHHHHHHHHHHh
Confidence 357788899999888777766543
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.029 Score=37.76 Aligned_cols=74 Identities=19% Similarity=0.171 Sum_probs=60.2
Q ss_pred HHHhHHHHHHHhHhcccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHH
Q 041273 205 LHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIA 284 (362)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 284 (362)
..-+.+..++|....+ .++|..+.|++-+.+.++-.++. +...++.++.++++.+..+.+...+..+.+++..
T Consensus 6 igRFayTplLP~M~~~------~~ls~~~ag~lasaNy~GYL~GA-l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~ 78 (85)
T PF06779_consen 6 IGRFAYTPLLPLMQAD------GGLSLSQAGWLASANYLGYLVGA-LLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTH 78 (85)
T ss_pred hHHHHHHhHhHHHHHh------cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445666677766554 69999999999999999999998 8888888888888889999998888888777766
Q ss_pred h
Q 041273 285 M 285 (362)
Q Consensus 285 ~ 285 (362)
.
T Consensus 79 ~ 79 (85)
T PF06779_consen 79 S 79 (85)
T ss_pred c
Confidence 4
|
Note that many members are hypothetical proteins. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.069 Score=47.09 Aligned_cols=80 Identities=5% Similarity=-0.095 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Q 041273 195 SSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSI 274 (362)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~ 274 (362)
.....++++.+.......+.|.+ ++. ++.+..+++.+....-.+-.+.+ +..+++.||+|.|+-+..++.+++
T Consensus 17 ~~t~lFfl~G~~~~l~diLip~l-~~~-----f~ls~~~a~liqfaff~gYf~~~-lpa~~~~kk~gyk~gi~lgL~l~a 89 (422)
T COG0738 17 LLTSLFFLWGFITCLNDILIPHL-KEV-----FDLTYFEASLIQFAFFGGYFIMS-LPAGLLIKKLGYKAGIVLGLLLYA 89 (422)
T ss_pred HHHHHHHHHHHHhhcchhhHHHH-HHH-----hCccHHHHHHHHHHHHHHHHHHh-ccHHHHHHHhhhHHHHHHHHHHHH
Confidence 33344444444444455555644 333 78999999999888888888887 888999999999999999999999
Q ss_pred HHHHHHH
Q 041273 275 PLLTSYT 281 (362)
Q Consensus 275 ~~~~~~~ 281 (362)
++..++.
T Consensus 90 vg~~lF~ 96 (422)
T COG0738 90 VGAALFW 96 (422)
T ss_pred HHHHHHh
Confidence 9877763
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.31 Score=41.79 Aligned_cols=66 Identities=12% Similarity=0.224 Sum_probs=48.9
Q ss_pred ccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhc
Q 041273 3 TSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILR 69 (362)
Q Consensus 3 ~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~ 69 (362)
.+++.+.+..++|.|+++.++...+... +..-+-+.+..++-+-...|++.+..... -+|+++.-.
T Consensus 74 s~m~~~~~Ir~~g~K~tm~lav~~Y~ly-iA~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~ 140 (390)
T KOG3097|consen 74 SSMFMPLLIRFLGTKWTMVLAVFPYALY-IAANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQ 140 (390)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHhhcchhHHhhccHHHhhccccccccccCcceecHHHH
Confidence 4566778888999999999988877653 33344567888899999999998877665 555555543
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.036 Score=48.44 Aligned_cols=94 Identities=13% Similarity=0.051 Sum_probs=77.1
Q ss_pred hhhhhcccC--CchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHHHHh
Q 041273 7 WGMVADRCG--RKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTLSTA 83 (362)
Q Consensus 7 ~G~l~Dr~G--rr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~~~~ 83 (362)
..+..||.. -+-.+..++....-..++...++....+..+-.+-.+..+...++ ..++....|.++||.++|+....
T Consensus 317 ~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl 396 (451)
T KOG2615|consen 317 LVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSL 396 (451)
T ss_pred ccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHH
Confidence 344455554 455666666666666677777888888888889988888888888 99999999999999999999999
Q ss_pred hhhhhhhhhhhhhhhcC
Q 041273 84 WGTGLIIGPAVGGFLAQ 100 (362)
Q Consensus 84 ~~~g~~~g~~~~~~l~~ 100 (362)
..++-.+||+++|.+..
T Consensus 397 ~alaRaiGPlv~g~i~~ 413 (451)
T KOG2615|consen 397 GALARAIGPLVSGVIFS 413 (451)
T ss_pred HHHHHHhhhhhhheeEE
Confidence 99999999999998876
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.13 Score=43.58 Aligned_cols=116 Identities=15% Similarity=0.026 Sum_probs=71.8
Q ss_pred hhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhHHHHHHhhhccccchhhHHHHHHhhhh
Q 041273 7 WGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPIKAYACEILRDQHKTLGLSTLSTAWGT 86 (362)
Q Consensus 7 ~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 86 (362)
...+.||+.--.=+.+..++.+.+.++.+++++.++-+.+-.+..++.|..-...--++..+++ ...+.++.+.+.
T Consensus 82 ~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~Y~~----~~i~~WSSGTGg 157 (409)
T KOG3880|consen 82 APFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSRYPS----IVIAGWSSGTGG 157 (409)
T ss_pred chhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhccCCC----ceeccccCCCCc
Confidence 3455667655444555667778888889999999998888888888777765553333344433 344567777777
Q ss_pred hhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHhh
Q 041273 87 GLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCW 140 (362)
Q Consensus 87 g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (362)
+.++|..--..+.+. + +.....+.++...+.++....+++
T Consensus 158 AGliGa~SYa~lT~~-------------~-~~spk~Tlli~l~lP~lfa~~yf~ 197 (409)
T KOG3880|consen 158 AGLIGASSYAFLTSW-------------A-NLSPKSTLLIMLFLPALFAFAYFF 197 (409)
T ss_pred chhhhhhHHHHHhhh-------------c-CCChhhHHHHHHHHHHHHHHHHHh
Confidence 777777666666551 1 333344445555555554444444
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.051 Score=49.53 Aligned_cols=129 Identities=13% Similarity=0.076 Sum_probs=83.2
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhch-hHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 041273 227 LSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGP-IIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVL 305 (362)
Q Consensus 227 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (362)
.+-+.+-.|+..+...++.++.+ +..++...|.+. |+.+..+.+++.++.+++......++...+. +.++-++ .+.
T Consensus 66 ~~A~~~ffG~viaa~slg~~i~~-liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~-mL~~R~l-~Gv 142 (488)
T KOG2325|consen 66 PTATATFFGLVIAASSLGHAIFS-LIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYL-MLVARIL-TGV 142 (488)
T ss_pred CCCCcchhhHHHHHHHHHHHhcc-hhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHH-HHHHHHH-cCc
Confidence 56677788999999999999998 777877887764 7888899999999988886666655433332 2222222 222
Q ss_pred HHHhhhHHHHHHhhh-ccccccCCC-----------------------------------CCCChhHHHHHHHHHHHHHH
Q 041273 306 SVSIMTGLFLLQNRA-VSQKRQGAG-----------------------------------FLPGNQMIFFILNLVEALGV 349 (362)
Q Consensus 306 ~~~~~~~~~~~~~~~-~p~~~~~~~-----------------------------------~~~g~~~~f~~~~~~~~i~~ 349 (362)
+.+.....-.++++. .+++|..+. -+.-|+.+-|+.+++.++..
T Consensus 143 g~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~ 222 (488)
T KOG2325|consen 143 GVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYI 222 (488)
T ss_pred CcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHH
Confidence 333445555666652 233332100 00026788888998888888
Q ss_pred Hhhcccccc
Q 041273 350 ILTFKPFLI 358 (362)
Q Consensus 350 ~~~~~~~l~ 358 (362)
++.+..|.+
T Consensus 223 v~i~~~f~E 231 (488)
T KOG2325|consen 223 VIILFFFKE 231 (488)
T ss_pred HHHHhheee
Confidence 877664444
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.73 Score=35.34 Aligned_cols=103 Identities=17% Similarity=0.140 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHh
Q 041273 239 AISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMTGLFLLQN 318 (362)
Q Consensus 239 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (362)
++......+.+ ++.|.+.+++|.|+.+.++.....+-....... .+...+....+.++.......+.-.++.
T Consensus 44 ai~Y~~~~~s~-l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~-------~~~~l~~~s~l~G~~~a~lW~aqg~ylt 115 (156)
T PF05978_consen 44 AILYGSFAISC-LFAPSIVNKLGPKWSMILGSLGYAIYIASFFYP-------NSYTLYPASALLGFGAALLWTAQGTYLT 115 (156)
T ss_pred HHHHHHHHHHH-HhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHhhhhHHhhHhhhHHHH
Confidence 34444445555 677889999999999998888776544333211 1223445555555566666666677777
Q ss_pred hhccccccCCCCCCChhHHHH-HHHHHHHHHHHhhcc
Q 041273 319 RAVSQKRQGAGFLPGNQMIFF-ILNLVEALGVILTFK 354 (362)
Q Consensus 319 ~~~p~~~~~~~~~~g~~~~f~-~~~~~~~i~~~~~~~ 354 (362)
+..++++.+. +...|| +.....++|.+..+.
T Consensus 116 ~~s~~~~~~~-----~~~ifw~i~~~s~i~G~~~~~~ 147 (156)
T PF05978_consen 116 SYSTEETIGR-----NTGIFWAIFQSSLIFGNLFLFF 147 (156)
T ss_pred HcCCHHHHhh-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 7665443322 112344 334445556555544
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.2 Score=48.23 Aligned_cols=104 Identities=10% Similarity=0.043 Sum_probs=65.8
Q ss_pred HHHhHhcccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH-hhchhHHHHHHHHHHHHHHHHHHHHHhhhh--h
Q 041273 213 IFSLWAISPWKYGGLSYSTENAGQVLAISGFSLLVFQLTLYPYVER-MIGPIIITRIAGVLSIPLLTSYTYIAMLSG--F 289 (362)
Q Consensus 213 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 289 (362)
.+..|+... +|++...+..+........-+.. .+++++.| ++|+++.+.++.++..++..++......+. .
T Consensus 9 iLvlYl~~~-----lg~~~~~A~~i~~~f~~l~yl~p-ilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~ 82 (654)
T TIGR00926 9 ILVLYFLNF-----LGFSESTSTVLFHTFTYLCYLTP-LIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHP 82 (654)
T ss_pred HHHHHHHHH-----cCCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccc
Confidence 444455443 68888887777777666666665 67777777 579999999999988888777655322111 1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcc
Q 041273 290 SLALLINCASVMKNVLSVSIMTGLFLLQNRAVS 322 (362)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 322 (362)
......+.+..+..++..+.-|+..+...+.++
T Consensus 83 ~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~ 115 (654)
T TIGR00926 83 LHDLLDLLGLALIALGTGGIKPCVSAFGGDQFE 115 (654)
T ss_pred hHHHHHHHHHHHHHhhccccccCchhhhHhhcC
Confidence 112223344444444455556777777777665
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=95.17 E-value=1.8 Score=39.69 Aligned_cols=51 Identities=14% Similarity=0.100 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHHHHhhhhhhhhhhhh
Q 041273 39 SFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTLSTAWGTGLIIGPAV 94 (362)
Q Consensus 39 ~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~ 94 (362)
.++..++.-++.|++.+..... .++.+ .+|++ .+..+..+.+++.+++.++
T Consensus 105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~----~~~a~~~G~g~aGv~~s~~ 156 (437)
T TIGR00939 105 FFVTTMASVVIINSGMALLQGSLFGLAG-VFPST----YSSAVMSGQGLAGVLTSLA 156 (437)
T ss_pred HHHHHHHHHHHHHhhhhhhcccchhhcc-cCCHH----HHHHHHhcchhHHHHHHHH
Confidence 4666677778888888877666 66555 55543 3455556666666665544
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.047 Score=49.92 Aligned_cols=128 Identities=14% Similarity=0.206 Sum_probs=80.4
Q ss_pred hcccCCchHHHHHHHHHHHHHHHHhh-h---------hhHHHHHHHHHHHhhhcCc-chhHHHHHHhhhccccchhhHHH
Q 041273 11 ADRCGRKPVIIIGCITVVIFNTLFGL-S---------VSFWMAIATRFLLGALNGL-LGPIKAYACEILRDQHKTLGLST 79 (362)
Q Consensus 11 ~Dr~Grr~~l~~~~~~~~~~~~~~~~-~---------~~~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r~~~~~~ 79 (362)
--+..-|+++....++..+..+.... . ++.+..+..-++..+.... ..|...+++|..|+..-+..+++
T Consensus 279 ~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yal 358 (433)
T PF03092_consen 279 FSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVIGMIAFMPSLVLAARLCPKGSEGTVYAL 358 (433)
T ss_pred HhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHH
Confidence 33455677777777766655543221 1 1222233334455544433 46778899999999999999999
Q ss_pred HHHhhhhhhhhhhhhhhhhcCccccCCccccc-ccccccccchhhHHHHHHHHHHHHHHHhhcccccCC
Q 041273 80 LSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSK-ESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLHK 147 (362)
Q Consensus 80 ~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 147 (362)
.....++|..++..++..+.+ .++. +..|++. ....+++.+..++.+....++|++.+.
T Consensus 359 l~s~~Nlg~~~s~~lg~~l~~-------~~~vt~~~f~~l--~~lili~~~~~ll~l~ll~lLp~~~~~ 418 (433)
T PF03092_consen 359 LASFSNLGSSVSSTLGAFLME-------LFGVTRDDFSNL--WLLILICSVIQLLPLPLLFLLPPQKRI 418 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HcCCCcccccch--HHHHHHHHHHHHHHHHHHHHcCCCchh
Confidence 999999999999999999987 3332 1113121 122244455555566666677776543
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.21 Score=44.62 Aligned_cols=65 Identities=18% Similarity=0.230 Sum_probs=55.8
Q ss_pred hhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHHHHhhhhhhhhhhhhhhhhc
Q 041273 35 GLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTLSTAWGTGLIIGPAVGGFLA 99 (362)
Q Consensus 35 ~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 99 (362)
-+.++.|.+++.-+..|+..|...+- ...+.|-.|+++|-.+++..+.+-+.|..++..++-.+-
T Consensus 330 ~fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 330 RFIPSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 35678999999999999987776665 888888889999999999999999999999988886654
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.22 Score=45.29 Aligned_cols=93 Identities=19% Similarity=0.288 Sum_probs=70.0
Q ss_pred cchhhhhhc---ccCCchHHHHHHHHHHHHHHHHhhh------------------hhHHHHHHHHHHHhhhcCcchhH-H
Q 041273 4 SVLWGMVAD---RCGRKPVIIIGCITVVIFNTLFGLS------------------VSFWMAIATRFLLGALNGLLGPI-K 61 (362)
Q Consensus 4 ~~~~G~l~D---r~Grr~~l~~~~~~~~~~~~~~~~~------------------~~~~~l~~~r~l~G~~~~~~~~~-~ 61 (362)
..+.+.+++ |+||++.+.++..+..++.++.-.. +++....+.-+++|++.+..... +
T Consensus 296 g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~ 375 (461)
T KOG3098|consen 296 GLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRY 375 (461)
T ss_pred HHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHH
Confidence 344555554 6899999999999888888776543 24556677778999999988777 9
Q ss_pred HHHHhhhccccchhhHHHHHHhhhhhhhhhhhhhhh
Q 041273 62 AYACEILRDQHKTLGLSTLSTAWGTGLIIGPAVGGF 97 (362)
Q Consensus 62 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 97 (362)
.++.+.. +++|..+.++...-..++..++-.....
T Consensus 376 ~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~ 410 (461)
T KOG3098|consen 376 VIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPY 410 (461)
T ss_pred HHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999 6778888888888877777665544443
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.052 Score=36.01 Aligned_cols=26 Identities=38% Similarity=0.944 Sum_probs=21.0
Q ss_pred cccchhhhhhcccCCchHHHHHHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITV 27 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~ 27 (362)
++++++|.++||++|++.++......
T Consensus 50 ~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 50 LAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 57899999999999988877665543
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.59 Score=44.20 Aligned_cols=106 Identities=16% Similarity=0.143 Sum_probs=78.7
Q ss_pred ccchhhhhhcc-cCCchHHHHHHHHHHHHHHHHhhhhh-------------------------HHHHHHHHHHHhhhcCc
Q 041273 3 TSVLWGMVADR-CGRKPVIIIGCITVVIFNTLFGLSVS-------------------------FWMAIATRFLLGALNGL 56 (362)
Q Consensus 3 ~~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~~~~~~~~~-------------------------~~~l~~~r~l~G~~~~~ 56 (362)
..+.++.++|- +||-+++.++.++..++..+..++.. ...++.+.-+..+|.|.
T Consensus 89 ~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg 168 (571)
T KOG1237|consen 89 LPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGG 168 (571)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCC
Confidence 35778999996 68889999998888888665544321 12455555666778888
Q ss_pred chhH-HHHHHhhhc---cc---cchhhHHHHHHhhhhhhhhhhhhhhhhcCccccCCccccccccc
Q 041273 57 LGPI-KAYACEILR---DQ---HKTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMF 115 (362)
Q Consensus 57 ~~~~-~~~i~~~~~---~~---~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~ 115 (362)
.-|+ .++-+|-++ ++ .+..-+.++....+.|..++..+..+..+ ..||...|
T Consensus 169 ~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~-------~~~w~lgf 227 (571)
T KOG1237|consen 169 IRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQD-------NVGWKLGF 227 (571)
T ss_pred CCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhh-------cccceeec
Confidence 8888 889898888 22 22367889999999999999888888876 78886655
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.47 E-value=3.4 Score=37.42 Aligned_cols=51 Identities=14% Similarity=-0.065 Sum_probs=40.1
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHH
Q 041273 227 LSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTS 279 (362)
Q Consensus 227 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~ 279 (362)
+| +.+.+-++..++.+..+... +..-|+.||+|-|....++....+++..+
T Consensus 75 Yg-s~~~~~wlsmIym~v~vp~g-f~~mw~ldk~GLR~a~llgt~ln~iGa~I 125 (480)
T KOG2563|consen 75 YG-SSSAADWLSMIYMVVSVPFG-FAAMWILDKFGLRTALLLGTVLNGIGAWI 125 (480)
T ss_pred hc-chHHHHHHHHHHHHHHHHHh-hHHHHhhcccchHHHHHHHHHHHHHHHHH
Confidence 45 55556677777777877776 88889999999999999998888777544
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=90.21 E-value=17 Score=34.35 Aligned_cols=54 Identities=20% Similarity=0.164 Sum_probs=34.1
Q ss_pred HHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041273 200 YCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLAISGFSLLVFQLTLYPYVERM 259 (362)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~ 259 (362)
.++..++...+.....-.+... +|-+....+.+.+++-.+..+++ .+.+++.++
T Consensus 23 ~f~sg~~~L~yEv~~~r~l~~~-----~G~s~~~~~~ii~~fl~glalGs-~l~~~~~~~ 76 (521)
T PRK03612 23 VFVCAACGLVYELLLGTLASYL-----LGDSVTQFSTVIGLMLFAMGVGA-LLSKYLLRD 76 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----hCchHHHHHHHHHHHHHHHHHHH-HHHHhhhhh
Confidence 3344444455544444333333 57788888888888888888887 666766543
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=88.51 E-value=12 Score=31.37 Aligned_cols=87 Identities=11% Similarity=-0.038 Sum_probs=53.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 041273 232 ENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMT 311 (362)
Q Consensus 232 ~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (362)
...+.......+...+.+ +..+.+.||.|+|+....+......+.+...+... . ..+ .........+.......+
T Consensus 39 ~~~~~~~~~~~~~~~~~~-~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~-~~~~~~~~~g~~~~~~~~ 113 (338)
T COG0477 39 LLYGLLLSAFFLGYAIGS-LLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPN-V--GLA-LLLILRLLQGLGGGGLLP 113 (338)
T ss_pred HHHHHHHHHHHHHHHHHh-hhhhhccccccchHHHHHHHHHHHHHHHHHHhCcc-c--hHH-HHHHHHHHHHhhhHHHHH
Confidence 467788888888888887 88999999999987776666543333222222222 1 111 111222223334445667
Q ss_pred HHHHHHhhhccc
Q 041273 312 GLFLLQNRAVSQ 323 (362)
Q Consensus 312 ~~~~~~~~~~p~ 323 (362)
....+..+..|+
T Consensus 114 ~~~~~~~~~~~~ 125 (338)
T COG0477 114 VASALLSEWFPE 125 (338)
T ss_pred HHHHHHHHhcCc
Confidence 888888888886
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=85.28 E-value=1.1 Score=30.27 Aligned_cols=42 Identities=17% Similarity=0.355 Sum_probs=35.7
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMA 43 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l 43 (362)
+|++...++.++..+++.+..+.+...+....+++.++.+..
T Consensus 42 ~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w 83 (85)
T PF06779_consen 42 VGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW 83 (85)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 466777788888788899999999999999999999887654
|
Note that many members are hypothetical proteins. |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.48 E-value=24 Score=31.82 Aligned_cols=34 Identities=15% Similarity=0.119 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccc
Q 041273 39 SFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHK 73 (362)
Q Consensus 39 ~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r 73 (362)
.++..++.-.+.+.+.|.+.-. ....++ .|+|.-
T Consensus 116 ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~yt 150 (406)
T KOG1479|consen 116 FFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYT 150 (406)
T ss_pred hHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHHH
Confidence 4556666677778887777666 555444 444443
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.70 E-value=5.1 Score=34.48 Aligned_cols=74 Identities=14% Similarity=0.192 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHHHHhhhhhhhhhhhhhhhh
Q 041273 25 ITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTLSTAWGTGLIIGPAVGGFL 98 (362)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 98 (362)
+++.+......+.+++|..++.-+.-|+-.|...+- .--+.+-.++++|-.+++....+-++|..++..++-.+
T Consensus 327 l~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl 401 (409)
T KOG3880|consen 327 LLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL 401 (409)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence 334444455667889999888889999966665444 55566667788899999999999999988877766544
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=82.54 E-value=38 Score=30.75 Aligned_cols=59 Identities=5% Similarity=-0.117 Sum_probs=39.6
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHh
Q 041273 227 LSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAM 285 (362)
Q Consensus 227 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 285 (362)
.|++.++..--......=.-+...+....+.|.++.|..+..+.+...+...++.+...
T Consensus 35 kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~s 93 (412)
T PF01770_consen 35 KNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTS 93 (412)
T ss_pred cCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCc
Confidence 58888877543333333333333466778999999999998888887777666655543
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.22 E-value=5.7 Score=36.15 Aligned_cols=95 Identities=14% Similarity=-0.026 Sum_probs=60.7
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh----hchhHHHH-HHHHHHHHHHHHHHHHHhhhh-----------hh
Q 041273 227 LSYSTENAGQVLAISGFSLLVFQLTLYPYVERM----IGPIIITR-IAGVLSIPLLTSYTYIAMLSG-----------FS 290 (362)
Q Consensus 227 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~----~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----------~~ 290 (362)
+|.+....+.+.....+.+.+.+ ++.|..+|| +||||..+ .+.....++++++++...... ..
T Consensus 62 lGvphk~~S~iw~~gPi~G~~vQ-P~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~r 140 (498)
T KOG0637|consen 62 LGVPHKWSSIIWLCGPLSGLLVQ-PLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPR 140 (498)
T ss_pred cCCCcccccccccccccccceec-ccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchH
Confidence 68888888888888889999998 888999996 57777654 445555666777776654321 12
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcc
Q 041273 291 LALLINCASVMKNVLSVSIMTGLFLLQNRAVS 322 (362)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 322 (362)
......+..-+.-+.........-++..+...
T Consensus 141 ai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~ 172 (498)
T KOG0637|consen 141 AIVLFILGFWLLDVANNTLQGPCRALLADLAR 172 (498)
T ss_pred HHHHHHHHhHHHHhhhhhhhhhHHHHHHHhcc
Confidence 22333344444444444444555677777554
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=80.83 E-value=7.2 Score=35.63 Aligned_cols=98 Identities=6% Similarity=-0.094 Sum_probs=65.6
Q ss_pred ccchhhhhhcccCCchHHHHHHHHHHHHHHHHhh---hh-------hHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccc
Q 041273 3 TSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGL---SV-------SFWMAIATRFLLGALNGLLGPI-KAYACEILRDQ 71 (362)
Q Consensus 3 ~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~---~~-------~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~ 71 (362)
+.....++.+|+|..|.=+++......+..++.. .+ +...++.+-.+.=+|-=.+-.+ .-++.|..|++
T Consensus 309 gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~ 388 (432)
T PF06963_consen 309 GTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPES 388 (432)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHH
Confidence 4567788899999888777776655544443322 11 2233333333433442234344 88999999999
Q ss_pred cchhhHHHHHHhhhhhhhhhhhhhhhhcC
Q 041273 72 HKTLGLSTLSTAWGTGLIIGPAVGGFLAQ 100 (362)
Q Consensus 72 ~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 100 (362)
+|+...|.-....++-.++-..++-.+.+
T Consensus 389 ~Rg~v~gvq~sl~~lf~ll~~~~~ii~~~ 417 (432)
T PF06963_consen 389 ERGAVSGVQNSLQSLFELLSFVLTIIFPR 417 (432)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 99999999999999998888777655543
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 362 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-06 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 7e-05 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.9 bits (118), Expect = 1e-06
Identities = 60/461 (13%), Positives = 127/461 (27%), Gaps = 166/461 (36%)
Query: 5 VLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIA----TRFLLGALNGLLGPI 60
++ G++ G K + + + FW+ + +L L LL I
Sbjct: 154 LIDGVLG--SG-KTWVALDVCLSYKVQCKMDFKI-FWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 61 KAYACE---------------------------------ILRD-QHKT------LGLSTL 80
+L + Q+ L L
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269
Query: 81 STAWGTGLI--IGPAVGGFLAQPAEKYPKAFSK---ESMFGKF----PYFLP---C---- 124
T + + A + + + + +S+ K+ P LP
Sbjct: 270 LTTRFKQVTDFLSAATTTHI--SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 125 LCMSLFAFAVTIASC-WIPETLHKHNEDGVS--LDVSCDALESACGSNAEFKQ------- 174
+S+ A ++ W + N D ++ ++ S + LE A E+++
Sbjct: 328 RRLSIIAESIRDGLATW--DNWKHVNCDKLTTIIESSLNVLEPA-----EYRKMFDRLSV 380
Query: 175 ----------------DEGSEEAT-------AKKSLMKNWPFISSTIVYCVFSLHDI--- 208
+ + K SL++ P STI S+ I
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK-ESTI-----SIPSIYLE 434
Query: 209 -----------------AY--TEIFSLWAISP------WKYGGLSYSTENAGQVLAISGF 243
Y + F + P + Y + + +N ++ F
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF-YSHIGHHLKNIEHPERMTLF 493
Query: 244 SLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLT---SY-TYI--------AMLSGFSL 291
++ ++E+ I A + L Y YI +++ L
Sbjct: 494 RMVFLDFR---FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI-L 549
Query: 292 ALLINCASVM-----KNVLSVSIMT---GLFLLQNRAVSQK 324
L + ++L +++M +F ++ V Q+
Sbjct: 550 DFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV-QR 589
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 7e-05
Identities = 30/154 (19%), Positives = 63/154 (40%), Gaps = 24/154 (15%)
Query: 1 ALTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI 60
++ + +G ++DR GR+PVI++G ++ + + S + IA + G + +G +
Sbjct: 49 GVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQG-MGTGVGGV 107
Query: 61 KAYACEILRDQHKTLG----LSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFG 116
A + RD ++ S L+ ++ P +GG L ++ + +
Sbjct: 108 MART--LPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT-------MWNWRACY- 157
Query: 117 KFPYFLPCLCMSLFAFAVTIAS-CWIPETLHKHN 149
L + + VT + W+PET
Sbjct: 158 --------LFLLVLCAGVTFSMARWMPETRPVDA 183
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 362 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.97 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.97 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.97 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.94 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.94 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.9 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.83 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.18 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.09 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 98.94 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 98.9 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 98.9 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.81 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.65 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-31 Score=245.84 Aligned_cols=343 Identities=14% Similarity=0.063 Sum_probs=224.9
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHh------------------hhhhHHHHHHHHHHHhhhcCcchhH-HH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFG------------------LSVSFWMAIATRFLLGALNGLLGPI-KA 62 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~------------------~~~~~~~l~~~r~l~G~~~~~~~~~-~~ 62 (362)
+|++++|+++||+|||++++++.+++.++.++++ +++|+++++++|+++|++.|...+. ..
T Consensus 70 iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~ 149 (491)
T 4gc0_A 70 IGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPM 149 (491)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999988 4789999999999999999988887 99
Q ss_pred HHHhhhccccchhhHHHHHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHhhcc
Q 041273 63 YACEILRDQHKTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIP 142 (362)
Q Consensus 63 ~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (362)
+++|+.|+++|++..+..+.+...|..+++.++..... ..+|.... .+.|+.+.....+..++.++..+++|
T Consensus 150 ~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p 221 (491)
T 4gc0_A 150 YIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIAR-------SGDASWLN-TDGWRYMFASECIPALLFLMLLYTVP 221 (491)
T ss_dssp HHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TSCTTTTT-TTHHHHHHHTTHHHHHHHHHHGGGSC
T ss_pred HHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhcc-------cccccccc-chhhHHHhhhhhhhhhhhhhhhhcCC
Confidence 99999999999999999999999999999999888776 33333322 34455555677777777777888999
Q ss_pred cccCCCCcCCccccccchhhhhhcCCC---Cccccc----cCcccchhhhcccccchhHHHHHHHHHHHHHHh-HHHHHH
Q 041273 143 ETLHKHNEDGVSLDVSCDALESACGSN---AEFKQD----EGSEEATAKKSLMKNWPFISSTIVYCVFSLHDI-AYTEIF 214 (362)
Q Consensus 143 e~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 214 (362)
|+|++...++++++ ..+.+++..+.+ ++..+. ++++........++.++.........+...... ....+.
T Consensus 222 eSp~~L~~~~~~~~-a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (491)
T 4gc0_A 222 ESPRWLMSRGKQEQ-AEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYA 300 (491)
T ss_dssp CCHHHHHHTTCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CChHHHHHcCchhH-HHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcc
Confidence 99987554443332 112221111110 000000 011111112223333443333333222222111 111122
Q ss_pred HhHhcccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 041273 215 SLWAISPWKYGGLSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALL 294 (362)
Q Consensus 215 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (362)
+..... .+.+...........++...++. ++.+++.||+|||+.+..+.....++++.+.......... +..
T Consensus 301 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~ 372 (491)
T 4gc0_A 301 PEVFKT------LGASTDIALLQTIIVGVINLTFT-VLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPG-IVA 372 (491)
T ss_dssp HHHHHH------SSCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCH-HHH
T ss_pred hHHHHh------cCCCccchhhHHHHHHHHHHHHH-HHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccch-HHH
Confidence 222222 46666666666677777778876 8889999999999999988888888776665544333222 222
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhhcccc-ccCCCCC----------------------------CChhHHHHHHHHHH
Q 041273 295 INCASVMKNVLSVSIMTGLFLLQNRAVSQK-RQGAGFL----------------------------PGNQMIFFILNLVE 345 (362)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~----------------------------~g~~~~f~~~~~~~ 345 (362)
......+...++.+..|..+.+.+|.+|++ |..+.-. .+...+|++.++++
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~ 452 (491)
T 4gc0_A 373 LLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMG 452 (491)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 222333333345555677889999999943 2211100 02335788889999
Q ss_pred HHHHHhhccccccccCC
Q 041273 346 ALGVILTFKPFLIQRAT 362 (362)
Q Consensus 346 ~i~~~~~~~~~l~~~~~ 362 (362)
+++.++.++ ++||+|+
T Consensus 453 ~~~~i~~~~-~~PETkg 468 (491)
T 4gc0_A 453 VLAALFMWK-FVPETKG 468 (491)
T ss_dssp HHHHHHHHH-HCCCCTT
T ss_pred HHHHHHHHh-eecCCCC
Confidence 998887764 8999874
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=7.1e-31 Score=239.09 Aligned_cols=322 Identities=13% Similarity=0.048 Sum_probs=230.7
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhh
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGL----SVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLG 76 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~----~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~ 76 (362)
++++++|+++||+|||++++++.++.+++.+++++ ++|++.++++|+++|++.+...+. .+++.|++|+|+|+++
T Consensus 77 ~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~ 156 (451)
T 1pw4_A 77 FSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGI 156 (451)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHH
T ss_pred HHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHH
Confidence 56899999999999999999999999999999999 999999999999999999988887 9999999999999999
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhcCccccCCcccc-cccccccccchhhHHHHHHHHHH-HHHHHhhcccccCCCCcCCcc
Q 041273 77 LSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFS-KESMFGKFPYFLPCLCMSLFAFA-VTIASCWIPETLHKHNEDGVS 154 (362)
Q Consensus 77 ~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~g-w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~ 154 (362)
+++.+...++|..++|.+++++.+ ..| ||+.| ++.+++.++ .++..+.+||++++.+.++++
T Consensus 157 ~~~~~~~~~~g~~~g~~~~~~l~~-------~~g~w~~~f---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (451)
T 1pw4_A 157 VSVWNCAHNVGGGIPPLLFLLGMA-------WFNDWHAAL---------YMPAFCAILVALFAFAMMRDTPQSCGLPPIE 220 (451)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHHH-------HTCCSTTCT---------HHHHHHHHHHHHHHHHHCCCSSTTTCCCSCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HhccHHHHH---------HHHHHHHHHHHHHHHhhccCCHhhcCCCChh
Confidence 999999999999999999999887 777 98877 555555554 444556788876654322211
Q ss_pred ccccchhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhh
Q 041273 155 LDVSCDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENA 234 (362)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~ 234 (362)
+.+..+. + + .++.++++....+...++.+|+|+++...+..++..........+.|.|+.+. +|+++.+.
T Consensus 221 ~~~~~~~-~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~ 290 (451)
T 1pw4_A 221 EYKNDYP-D---D-YNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEV-----KHFALDKS 290 (451)
T ss_dssp TTCCC------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTB-----SCCCHHHH
T ss_pred hhccccc-c---c-chhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHH
Confidence 1100000 0 0 00000001111112246788999999988888888888888888889888765 78999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh--chhHHHHHHHHHHH-HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 041273 235 GQVLAISGFSLLVFQLTLYPYVERMI--GPIIITRIAGVLSI-PLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMT 311 (362)
Q Consensus 235 g~~~~~~~~~~~~~~~~~~~~l~~~~--g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (362)
+.+.+..+++.++++ ++.+++.||+ ++|+.+..+..+.. ++++.+.+... ...+. ......+.+.+.....+
T Consensus 291 ~~~~~~~~~~~~~~~-~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~g~~~~~~~~ 365 (451)
T 1pw4_A 291 SWAYFLYEYAGIPGT-LLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPA---GNPTV-DMICMIVIGFLIYGPVM 365 (451)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCT---TCHHH-HHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcc---cCHHH-HHHHHHHHHHHHhchHH
Confidence 999999999999998 8999999999 99988877766655 44444332211 11222 22222222333344456
Q ss_pred HHHHHHhhhccccccCCC--------------C----------CCChhHHHHHHHHHHHHHHHhhcc
Q 041273 312 GLFLLQNRAVSQKRQGAG--------------F----------LPGNQMIFFILNLVEALGVILTFK 354 (362)
Q Consensus 312 ~~~~~~~~~~p~~~~~~~--------------~----------~~g~~~~f~~~~~~~~i~~~~~~~ 354 (362)
....+..|..|+++.+.. . ..|++.+|++.+++.+++.++.+.
T Consensus 366 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 366 LIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 667888898884432110 0 015778888888888888776654
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-30 Score=233.56 Aligned_cols=308 Identities=12% Similarity=0.101 Sum_probs=221.6
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLF---GLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGL 77 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~ 77 (362)
+++++.|+++||+|||++++.+.++.+++.+++ .++++++.+++.|+++|++.+...+. .++++|++|+|+|++++
T Consensus 76 i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~ 155 (438)
T 3o7q_A 76 IIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRL 155 (438)
T ss_dssp TTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHH
T ss_pred HHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHH
Confidence 578999999999999999999999999999999 88899999999999999999988877 99999999999999999
Q ss_pred HHHHHhhhhhhhhhhhhhhhhc-CccccCC------------------cccccccccccccchhhHHHHHHHHHHHHHHH
Q 041273 78 STLSTAWGTGLIIGPAVGGFLA-QPAEKYP------------------KAFSKESMFGKFPYFLPCLCMSLFAFAVTIAS 138 (362)
Q Consensus 78 ~~~~~~~~~g~~~g~~~~~~l~-~~~~~~~------------------~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (362)
++.+...++|..++|.+++.+. +..+... ...+||+.| ++.+...++..+..
T Consensus 156 ~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~---------~~~~~~~~~~~~~~ 226 (438)
T 3o7q_A 156 NLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPY---------MIIVAIVLLVALLI 226 (438)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHH---------HHHHHHHHHHHHHH
Confidence 9999999999999999999998 4110000 000055444 44444444333333
Q ss_pred hh--cccccCCCCcCCccccccchhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHh
Q 041273 139 CW--IPETLHKHNEDGVSLDVSCDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSL 216 (362)
Q Consensus 139 ~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (362)
.+ .||++++++++++ +++...+.++++|+|+++...+..++..........+.|.
T Consensus 227 ~~~~~p~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (438)
T 3o7q_A 227 MLTKFPALQSDNHSDAK-----------------------QGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIR 283 (438)
T ss_dssp HHCCCCCCTTTCCCCSS-----------------------TTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCccccccccccc-----------------------ccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 3443322111111 1113456778899999999988888888877888888888
Q ss_pred H-hcccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 041273 217 W-AISPWKYGGLSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLI 295 (362)
Q Consensus 217 ~-~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (362)
| ..+. +|+++.+.+...+...++..+++ ++.+++.||+++|+.+..+..+..++.+.+.+.... +. .
T Consensus 284 ~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~-~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~ 351 (438)
T 3o7q_A 284 YAVEEI-----PGMTAGFAANYLTGTMVCFFIGR-FTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGH-----VG-L 351 (438)
T ss_dssp HHHHHS-----TTCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHH-----HH-H
T ss_pred Hhhhcc-----CCcchhHHHHHHHHHHHHHHHHH-HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCc-----HH-H
Confidence 8 6665 68999999999999999999998 899999999999999988888777766555443321 11 1
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhhhccccccCCCCC---------------------CC-hhHHHHHHHHHHHHHHHhhc
Q 041273 296 NCASVMKNVLSVSIMTGLFLLQNRAVSQKRQGAGFL---------------------PG-NQMIFFILNLVEALGVILTF 353 (362)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~---------------------~g-~~~~f~~~~~~~~i~~~~~~ 353 (362)
....+.+.+.....|....+..|..|+++..+... .| ++..|.+.+++.++..++.+
T Consensus 352 -~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 430 (438)
T 3o7q_A 352 -IALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIVMTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFAR 430 (438)
T ss_dssp -HHHHHHHHHHTTHHHHHHHHHHSSCGGGHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 11122233444556778888788888544311100 04 66777777666666555444
Q ss_pred c
Q 041273 354 K 354 (362)
Q Consensus 354 ~ 354 (362)
+
T Consensus 431 ~ 431 (438)
T 3o7q_A 431 F 431 (438)
T ss_dssp T
T ss_pred H
Confidence 3
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.6e-28 Score=213.55 Aligned_cols=270 Identities=14% Similarity=0.146 Sum_probs=196.4
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTL 80 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~ 80 (362)
+++++.|+++||+|||+++..+..+.+++.++..+++|++.+++.|+++|++.+...+. .+++.|++|+|+|+++++..
T Consensus 50 ~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (375)
T 2gfp_A 50 VSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLL 129 (375)
T ss_dssp HHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHH
T ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999988887 99999999999999999999
Q ss_pred HHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHH-HHhhcccccCCCCcCCccccccc
Q 041273 81 STAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTI-ASCWIPETLHKHNEDGVSLDVSC 159 (362)
Q Consensus 81 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~ 159 (362)
+...++|..++|.+++++.+ ..|||..+ .+.++..++..+ ..+.+||+++++++++ +
T Consensus 130 ~~~~~~g~~~~~~~~~~l~~-------~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--- 187 (375)
T 2gfp_A 130 NMGILVSPLLAPLIGGLLDT-------MWNWRACY---------LFLLVLCAGVTFSMARWMPETRPVDAPRT---R--- 187 (375)
T ss_dssp HHHHHHHHHHHHHHHHHSSC-------HHHHHHHH---------HHHHHHHHHHHCCCCCSSCCCSTTTCCCC---C---
T ss_pred HHHHHHHHHhhHHHHHHHHH-------hccHHHHH---------HHHHHHHHHHHHHHHHHCcccCCCCcccc---c---
Confidence 99999999999999999988 67887766 555555444333 3455677654322111 0
Q ss_pred hhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHHH
Q 041273 160 DALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLA 239 (362)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~ 239 (362)
..++.++.+|+|+++...+..++..........+.|.|..+. +|+++.+.+.+..
T Consensus 188 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~g~~~~ 242 (375)
T 2gfp_A 188 --------------------LLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAV-----LGLSSMTVSILFI 242 (375)
T ss_dssp --------------------TTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHH-----HHHHHHHHHHHHH
T ss_pred --------------------HHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCHHHHHHHHH
Confidence 123456678888888888877777766666666666665543 6888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHH-HHHHHH--HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 041273 240 ISGFSLLVFQLTLYPYVERMIGPIIITRIAGVL-SIPLLT--SYTYIAMLSGFSLALLINCASVMKNVLSVSIMTGLFLL 316 (362)
Q Consensus 240 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (362)
..+++..+++ ++.+++.||.+++. ..+... ...+.. ....... . ..+ .......+.+.+.....+....+
T Consensus 243 ~~~~~~~~~~-~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~--~~~-~~~~~~~l~g~~~~~~~~~~~~~ 315 (375)
T 2gfp_A 243 LPIPAAFFGA-WFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWFGV-M--NVW-TLLVPAALFFFGAGMLFPLATSG 315 (375)
T ss_dssp THHHHHHHHH-HHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHHHH-H--HHH-HHHHHHHHHHHHHHHTSSTTHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhcc-c--cHH-HHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999988887 88899999987732 222222 222211 1111111 1 112 12222233333445556788888
Q ss_pred Hhhhccccc
Q 041273 317 QNRAVSQKR 325 (362)
Q Consensus 317 ~~~~~p~~~ 325 (362)
..|..|+.|
T Consensus 316 ~~~~~p~~~ 324 (375)
T 2gfp_A 316 AMEPFPFLA 324 (375)
T ss_dssp HHTHHHHHH
T ss_pred HHHhCCccc
Confidence 889888443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.94 E-value=5e-26 Score=209.46 Aligned_cols=331 Identities=12% Similarity=0.089 Sum_probs=203.0
Q ss_pred cccchhhhhhcc-cCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhcccc--chhhH
Q 041273 2 LTSVLWGMVADR-CGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQH--KTLGL 77 (362)
Q Consensus 2 i~~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~--r~~~~ 77 (362)
+++++.|+++|| +|||+++..+.++.+++.+++++++|++.++++|+++|++.+...+. .++++|++|+++ |+.++
T Consensus 69 ~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 148 (491)
T 4aps_A 69 LSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGF 148 (491)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHH
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeee
Confidence 578999999999 89999999999999999999999999999999999999999988887 999999999988 77788
Q ss_pred HHHHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHh-hcccccCCCCcCCc---
Q 041273 78 STLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASC-WIPETLHKHNEDGV--- 153 (362)
Q Consensus 78 ~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~--- 153 (362)
+.++...++|..++|.+++.+.+ ..|||+.| .+.++..++..+... ..|+..+++.++.+
T Consensus 149 ~~~~~~~~~g~~~~~~~~~~l~~-------~~g~~~~f---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (491)
T 4aps_A 149 SIFVFGINLGAFIAPLIVGAAQE-------AAGYHVAF---------SLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPL 212 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HSCHHHHH---------HHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh-------hhhHHHHH---------HHHHHHHHHHHHHHHHhCcccccccccCCCCcc
Confidence 88999999999999999999987 77887776 444444443333332 22322211111111
Q ss_pred cccccchhhhh---------------hcCCCCcccccc------------------CcccchhhhcccccchhHHHHHHH
Q 041273 154 SLDVSCDALES---------------ACGSNAEFKQDE------------------GSEEATAKKSLMKNWPFISSTIVY 200 (362)
Q Consensus 154 ~~~~~~~~~~~---------------~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~ 200 (362)
+.++..+..+. ...++.+.++.. .++......+..+........+..
T Consensus 213 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (491)
T 4aps_A 213 APEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAA 292 (491)
T ss_dssp SHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHH
Confidence 11100110000 000000000000 000000111111222334444444
Q ss_pred HHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHH-----HHHHHHHH
Q 041273 201 CVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITR-----IAGVLSIP 275 (362)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~-----~~~~~~~~ 275 (362)
.+...........++.|..+. .+.+..+.+......++...++. ++.+++.||++||+... .+..+..+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~ 366 (491)
T 4aps_A 293 VLFWAIEEQGSVVLATFAAER-----VDSSWFPVSWFQSLNPLFIMLYT-PFFAWLWTAWKKNQPSSPTKFAVGLMFAGL 366 (491)
T ss_dssp HHHHHHHGGGGTHHHHHHHHS-----CCCSSSCSGGGTTHHHHHHHHHH-HHHHHHHHHTTTC---CHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHH-----hccCccCHHHHhccchHHHHHHH-HHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 455555555566677776654 45555667777777788888887 78899999999886544 56666555
Q ss_pred HHHHHHHHHhhh---hhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhccccccCCCCC---------------------
Q 041273 276 LLTSYTYIAMLS---GFSLALLINCASVMKNVLSVSIMTGLFLLQNRAVSQKRQGAGFL--------------------- 331 (362)
Q Consensus 276 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~--------------------- 331 (362)
+..++.+..... ....+....+...+.+.+.....+..+.+..|..|+++.+....
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~ 446 (491)
T 4aps_A 367 SFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYN 446 (491)
T ss_dssp HHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGG
T ss_pred HHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555544433110 00111122233334344555556888899999999664432211
Q ss_pred -CChhHHHHHHHHHHHHHHHhhcc
Q 041273 332 -PGNQMIFFILNLVEALGVILTFK 354 (362)
Q Consensus 332 -~g~~~~f~~~~~~~~i~~~~~~~ 354 (362)
.++...|.+.+++.+++.++.+.
T Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~ 470 (491)
T 4aps_A 447 AKSEVAYFSYFGLGSVVLGIVLVF 470 (491)
T ss_dssp GSSTTHHHHHTHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHH
Confidence 14567788888887777766554
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-23 Score=189.39 Aligned_cols=316 Identities=11% Similarity=0.087 Sum_probs=179.5
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHH---HHHhhhhhHH-HHHHHHHHHhhhcCcchhH-HHHHHhhhcc--ccch
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFN---TLFGLSVSFW-MAIATRFLLGALNGLLGPI-KAYACEILRD--QHKT 74 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~---~~~~~~~~~~-~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~--~~r~ 74 (362)
++++++|+++||+|||++++.+..+.+++. ....+++... .+...+++.|++.+...+. ...+.++.++ ++|+
T Consensus 58 i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 137 (417)
T 2cfq_A 58 LFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSN 137 (417)
T ss_dssp HHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcc
Confidence 578999999999999999998887765532 2122332221 2344566666655543333 4444444443 4567
Q ss_pred hhHHHHHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHhhcccccCCCCcCCcc
Q 041273 75 LGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLHKHNEDGVS 154 (362)
Q Consensus 75 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 154 (362)
..++......++|..++|.+++++.+ .+||..| ++.++..++..+..+..||+++++.+++ +
T Consensus 138 ~~~g~~~~~~~~g~~~~~~l~~~l~~--------~~~~~~f---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 199 (417)
T 2cfq_A 138 FEFGRARMFGCVGWALGASIVGIMFT--------INNQFVF---------WLGSGCALILAVLLFFAKTDAPSSATVA-N 199 (417)
T ss_dssp CCHHHHSSSTTTHHHHHHHHHHHHHH--------HCSHHHH---------TTTTTTTTTHHHHSCSSCCCCSCSSCSS-S
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH--------hchhHHH---------HHHHHHHHHHHHHHHHcCcccccccccc-c
Confidence 77888888899999999999999874 3566555 3333333333333334444332111000 0
Q ss_pred ccccchhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhh
Q 041273 155 LDVSCDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENA 234 (362)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~ 234 (362)
.+ + +++++....+.++++|+|+++...+..+........+...+|.|+.+.. +..+.+....
T Consensus 200 ~~--------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 261 (417)
T 2cfq_A 200 AV--------------G--ANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFF--ATGEQGTRVF 261 (417)
T ss_dssp SS--------------S--SCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--SSHHHHTHHH
T ss_pred cc--------------c--cccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--hccCCChhHH
Confidence 00 0 0000111234566788888877666544444444444455677764431 1112335566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHH
Q 041273 235 GQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMTGLF 314 (362)
Q Consensus 235 g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (362)
+...++..+...++. ++.+++.||+|+|+.+..+..+..+..+.+.+.. + .+... +...+.........+...
T Consensus 262 g~~~~~~~~~~~~~~-~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~---~--~~~~~-~~~~l~~~~~~~~~~~~~ 334 (417)
T 2cfq_A 262 GYVTTMGELLNASIM-FFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT---S--ALEVV-ILKTLHMFEVPFLLVGCF 334 (417)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCC---S--HHHHH-HHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhc---c--HHHHH-HHHHHHHHHHHHHHHHHH
Confidence 777777777777876 8899999999999998877777666544443221 1 11111 111121222233334556
Q ss_pred HHHhhhccccccCC---C--CCC-------------------ChhHHHHHHHHHHHHHHHhhccccccccC
Q 041273 315 LLQNRAVSQKRQGA---G--FLP-------------------GNQMIFFILNLVEALGVILTFKPFLIQRA 361 (362)
Q Consensus 315 ~~~~~~~p~~~~~~---~--~~~-------------------g~~~~f~~~~~~~~i~~~~~~~~~l~~~~ 361 (362)
.+.+|..|++..+. . ... |++..|.+.+++.+++.++.+. ..+|+|
T Consensus 335 ~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~-~~~~~~ 404 (417)
T 2cfq_A 335 KYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVF-TLSGPG 404 (417)
T ss_dssp HHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTT-SSCCSC
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHh-hhcCCC
Confidence 78888888443321 1 111 3567788888888888776654 344443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-20 Score=174.34 Aligned_cols=107 Identities=17% Similarity=0.240 Sum_probs=98.1
Q ss_pred cccchhhhhhccc-CCchHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHH
Q 041273 2 LTSVLWGMVADRC-GRKPVIIIGCITVVIFNTLFGLSV-SFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLS 78 (362)
Q Consensus 2 i~~~~~G~l~Dr~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~ 78 (362)
+++++.|+++||+ |||+++..+.++.+++.+++++++ +++.+++.|++.|++.+...+. .+++.|++|+++|+++.+
T Consensus 69 ~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 148 (524)
T 2xut_A 69 FFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQK 148 (524)
T ss_dssp HTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHH
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHH
Confidence 5688999999999 999999999999999999999999 9999999999999999988887 999999999999987666
Q ss_pred H---HHHhhhhhhhhhhhhhhhhcCccccCCccccccccc
Q 041273 79 T---LSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMF 115 (362)
Q Consensus 79 ~---~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~ 115 (362)
. .+...++|..+||.+++.+.+ ..|||+.|
T Consensus 149 ~~~~~~~~~~~g~~~g~~~~~~l~~-------~~g~~~~f 181 (524)
T 2xut_A 149 AFDMFYFTINFGSFFASLSMPLLLK-------NFGAAVAF 181 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHTSTHHHH-------TSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-------cccHHHHH
Confidence 6 999999999999999999987 67787766
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.7e-11 Score=109.99 Aligned_cols=128 Identities=11% Similarity=0.047 Sum_probs=99.2
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHH-
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLST- 79 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~- 79 (362)
++.++.|+++||+|||+++..+.++.+++..+.++.++.+.+++..++.+++.+...+. ..++.|.+|++.|+.+.+.
T Consensus 274 ~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~ 353 (417)
T 2cfq_A 274 SIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVC 353 (417)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 35688999999999999999998888888888888888888888888888876655555 8899999999999999998
Q ss_pred HHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHH-hhccccc
Q 041273 80 LSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIAS-CWIPETL 145 (362)
Q Consensus 80 ~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~ 145 (362)
++....+|..++|.++|++.+ ..|++..| .+.+++.++..+.. ...||++
T Consensus 354 ~~~~~~lg~~~gp~l~G~l~~-------~~g~~~~f---------~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 354 FCFFKQLAMIFMSVLAGNMYE-------SIGFQGAY---------LVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HTTTHHHHHHHHTHHHHTHHH-------HSHHHHHH---------HHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHHhHHHHHhhhhHHHHHH-------hcCcHHHH---------HHHHHHHHHHHHHHHhhhcCCC
Confidence 488888999999999999887 44544443 55555555544433 3445433
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.09 E-value=1.1e-10 Score=105.67 Aligned_cols=124 Identities=15% Similarity=0.096 Sum_probs=98.5
Q ss_pred cccchhhhhhccc--CCchHHHHHHHHHH-HHHHHHhhh--hhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchh
Q 041273 2 LTSVLWGMVADRC--GRKPVIIIGCITVV-IFNTLFGLS--VSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTL 75 (362)
Q Consensus 2 i~~~~~G~l~Dr~--Grr~~l~~~~~~~~-~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~ 75 (362)
++.++.|+++||+ |||+.+..+..+.. ++.++..+. .+.+.+.+..++.|++.+...+. ..++.|.+|+++|++
T Consensus 303 ~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~ 382 (451)
T 1pw4_A 303 PGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGT 382 (451)
T ss_dssp HHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHH
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhh
Confidence 4678899999999 99999888877766 677766666 36777888888899987777666 899999999999999
Q ss_pred hHHHHHHhhhh-hhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHhhc
Q 041273 76 GLSTLSTAWGT-GLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWI 141 (362)
Q Consensus 76 ~~~~~~~~~~~-g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (362)
++++.+....+ |..++|.+.+.+.+ ..||+..| ++.+++.++..+.....
T Consensus 383 ~~~~~~~~~~~~g~~~~~~~~g~l~~-------~~g~~~~~---------~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 383 AAGFTGLFGYLGGSVAASAIVGYTVD-------FFGWDGGF---------MVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------SSCSHHHH---------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCcHHHH---------HHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999999988 55665544 55555555544444433
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.7e-09 Score=99.02 Aligned_cols=99 Identities=9% Similarity=0.056 Sum_probs=81.8
Q ss_pred cccchhhhhhcccCCchHHH-----HHHHHHHHHHHHHhhhh---------hHHHHHHHHHHHhhhcCcchhH-HHHHHh
Q 041273 2 LTSVLWGMVADRCGRKPVII-----IGCITVVIFNTLFGLSV---------SFWMAIATRFLLGALNGLLGPI-KAYACE 66 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~-----~~~~~~~~~~~~~~~~~---------~~~~l~~~r~l~G~~~~~~~~~-~~~i~~ 66 (362)
++.++.|++.||+|||+... .+.++.+++..+..+.. +.+.+.+.-++.|++.+...+. ..++.|
T Consensus 334 ~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~ 413 (491)
T 4aps_A 334 LYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTK 413 (491)
T ss_dssp HHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 35678899999999987655 77777777776666643 6777888888999998887776 999999
Q ss_pred hhccccchhhHHHHHHhhhhhhhhhhhhhhhhcC
Q 041273 67 ILRDQHKTLGLSTLSTAWGTGLIIGPAVGGFLAQ 100 (362)
Q Consensus 67 ~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 100 (362)
.+|+++|++++++.+....+|..++|.+.+.+.+
T Consensus 414 ~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~ 447 (491)
T 4aps_A 414 LAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA 447 (491)
T ss_dssp HTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999988875
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=9.2e-09 Score=94.12 Aligned_cols=135 Identities=18% Similarity=0.170 Sum_probs=88.1
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhh-----hHHHHHHH-HHHHhhhcCcchhH-HHHHHhhhccccch
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSV-----SFWMAIAT-RFLLGALNGLLGPI-KAYACEILRDQHKT 74 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~-r~l~G~~~~~~~~~-~~~i~~~~~~~~r~ 74 (362)
++.++.+++.||+|||+.++.+.....++.+..+... +...+... -+..+.+.+ ..|. ..+.+|.+|.+.|+
T Consensus 327 ~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~E~fPt~~R~ 405 (491)
T 4gc0_A 327 TFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMS-WGPVCWVLLSEIFPNAIRG 405 (491)
T ss_dssp HHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT-TTHHHHHHHHHSSCTTTHH
T ss_pred HHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhH-HHHHHHHHHHHhCCHhHHH
Confidence 3567889999999999999998888887776654331 22222222 222233333 3455 89999999999999
Q ss_pred hhHHHHHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHH-HHHHHhhcccccCC
Q 041273 75 LGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFA-VTIASCWIPETLHK 147 (362)
Q Consensus 75 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~ 147 (362)
+++++......++..+++.+...+.+... .....++. .+.++.+.++++ .++.++++||++.+
T Consensus 406 ~~~g~~~~~~~~~~~i~~~~~p~l~~~~~-~~~~~~~~---------~~~~i~~~~~~~~~i~~~~~~PETkg~ 469 (491)
T 4gc0_A 406 KALAIAVAAQWLANYFVSWTFPMMDKNSW-LVAHFHNG---------FSYWIYGCMGVLAALFMWKFVPETKGK 469 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHCHHHH-HHHHHTTC---------HHHHHHHHHHHHHHHHHHHHCCCCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhh---------HHHHHHHHHHHHHHHHHHheecCCCCC
Confidence 99999999999999999888776654100 00011221 122445555554 45566789998654
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=4.4e-09 Score=94.69 Aligned_cols=104 Identities=15% Similarity=0.056 Sum_probs=87.3
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTL 80 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~ 80 (362)
++.++.|+++||+|||+.+..+.++.+++.++..+.++.+.+... ++.|++.+...|. .++..|.+|++ |+.+.++.
T Consensus 310 ~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 387 (438)
T 3o7q_A 310 IGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFI 387 (438)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHH
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHH
Confidence 467889999999999999999999999999888888887665554 7888888887777 88989999866 88888877
Q ss_pred HHhhhhhhhhhhhhhhhhcCccccCCcccc-ccccc
Q 041273 81 STAWGTGLIIGPAVGGFLAQPAEKYPKAFS-KESMF 115 (362)
Q Consensus 81 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~g-w~~~~ 115 (362)
. ...+|..++|.+.+.+.+ ..| ++..|
T Consensus 388 ~-~~~~g~~~~~~~~g~l~~-------~~g~~~~~~ 415 (438)
T 3o7q_A 388 V-MTIIGGGIVTPVMGFVSD-------AAGNIPTAE 415 (438)
T ss_dssp H-HTTHHHHHHHHHHHHHHH-------HHTSSGGGG
T ss_pred H-HHHHHHHHHHHHHHHHHH-------HhcchHHHH
Confidence 7 667999999999999998 566 65555
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.81 E-value=7.7e-08 Score=84.73 Aligned_cols=148 Identities=11% Similarity=0.009 Sum_probs=101.4
Q ss_pred HHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH
Q 041273 199 VYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLT 278 (362)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~ 278 (362)
..++.......+...+|.+..+ +|.|+.+.+.+.+...++..+++ +..+++.||+|||+.+..+.....++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~------~g~s~~~~g~~~~~~~~~~~~~~-~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 8 LVAVGQMAQTIYIPAIADMARD------LNVREGAVQSVMGAYLLTYGVSQ-LFYGPISDRVGRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT------SSSTTHHHHHHHHHHHHHHHHHH-TTHHHHHTTSCCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHH------cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCchhHHHHHHHHHHHHH
Confidence 3334444444444455544333 79999999999999999999998 9999999999999999999988888877
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhccccccCCCC---------------------CC--Chh
Q 041273 279 SYTYIAMLSGFSLALLINCASVMKNVLSVSIMTGLFLLQNRAVSQKRQGAGF---------------------LP--GNQ 335 (362)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~---------------------~~--g~~ 335 (362)
...+.++.. ...+...+.+.+.....+....++.|..|+++.+... .. |.+
T Consensus 81 ~~~~~~~~~------~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 154 (375)
T 2gfp_A 81 VAVTTSSLT------VLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWR 154 (375)
T ss_dssp HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHhccHH------HHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHH
Confidence 766654321 2333344444555667788889999998855443211 00 467
Q ss_pred HHHHHHHHHHHHHHHhhcccccccc
Q 041273 336 MIFFILNLVEALGVILTFKPFLIQR 360 (362)
Q Consensus 336 ~~f~~~~~~~~i~~~~~~~~~l~~~ 360 (362)
.+|.+.+++.++..+..+. ++||+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~-~~~~~ 178 (375)
T 2gfp_A 155 ACYLFLLVLCAGVTFSMAR-WMPET 178 (375)
T ss_dssp HHHHHHHHHHHHHHCCCCC-SSCCC
T ss_pred HHHHHHHHHHHHHHHHHHH-HCccc
Confidence 7888888887777664443 45554
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.65 E-value=3.9e-07 Score=84.02 Aligned_cols=151 Identities=9% Similarity=0.012 Sum_probs=106.3
Q ss_pred chhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccC------CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhh-chh
Q 041273 191 WPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLS------YSTENAGQVLAISGFSLLVFQLTLYPYVERMI-GPI 263 (362)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~-g~~ 263 (362)
+.++...+..++...........++.|+.+. +| +++.+.|.+.+...++..+++ +..|++.||+ |||
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-----~~~~~~~~~s~~~~g~~~~~~~~~~~~~~-~~~G~l~dr~~g~r 85 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTA-----LLLSIPEELRGAVAKDVFHSFVIGVYFFP-LLGGWIADRFFGKY 85 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHS-----CSSCCSSSTTTTTHHHHHHHHHHHHHHTH-HHHHHHHTTSSCSH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hccccccccCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcch
Confidence 4555666666666666666667777777654 56 999999999999999999998 8999999999 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-hhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhccccccC---CC---C------
Q 041273 264 IITRIAGVLSIPLLTSYTYIA-MLSGFSLALLINCASVMKNVLSVSIMTGLFLLQNRAVSQKRQG---AG---F------ 330 (362)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~---~------ 330 (362)
+.+..+..+..++.++..+.. +. + ...+...+.+.+.....+...+++.|.+|+++.+ +. .
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 159 (524)
T 2xut_A 86 NTILWLSLIYCVGHAFLAIFEHSV-----Q-GFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINF 159 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCH-----H-HHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccH-----H-HHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHH
Confidence 999988888877776665443 21 1 2223334444455666788899999999855432 11 0
Q ss_pred --------------CCChhHHHHHHHHHHHHHHHhhc
Q 041273 331 --------------LPGNQMIFFILNLVEALGVILTF 353 (362)
Q Consensus 331 --------------~~g~~~~f~~~~~~~~i~~~~~~ 353 (362)
..|.+.+|++.+++.+++.+..+
T Consensus 160 g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 160 GSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 01567888888887777665543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 362 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 3e-04 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 40.4 bits (93), Expect = 3e-04
Identities = 32/322 (9%), Positives = 70/322 (21%), Gaps = 16/322 (4%)
Query: 1 ALTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI 60
+ + G V+DR + + G I G +IA F+L L G +
Sbjct: 73 GFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGM 132
Query: 61 KAYAC-EILRDQHKTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFP 119
C + + + W +G + L
Sbjct: 133 GWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLL---------------FLLGMA 177
Query: 120 YFLPCLCMSLFAFAVTIASCWIPETLHKHNEDGVSLDVSCDALESACGSNAEFKQDEGSE 179
+F I + + L + E + E +
Sbjct: 178 WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTA 237
Query: 180 EATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLA 239
+ + ++ N I L + + + S A
Sbjct: 238 KQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYA 297
Query: 240 ISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCAS 299
+LL ++ + + ++ + ++I
Sbjct: 298 GIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLI 357
Query: 300 VMKNVLSVSIMTGLFLLQNRAV 321
+L L +
Sbjct: 358 YGPVMLIGLHALELAPKKAAGT 379
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 362 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.96 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.86 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.25 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 98.79 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=7.9e-29 Score=222.88 Aligned_cols=330 Identities=12% Similarity=0.003 Sum_probs=221.3
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhh
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSV----SFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLG 76 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~----~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~ 76 (362)
++++++|+++||+|||+++..+.++.+++.+++++++ +++.+++.|++.|++.+...+. .++++|++|+++|+++
T Consensus 74 ~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~ 153 (447)
T d1pw4a_ 74 FSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGI 153 (447)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHH
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhccccc
Confidence 5789999999999999999999999999999888764 7788999999999999888777 9999999999999999
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHH-HHHHHhhcccccCCCCcCCccc
Q 041273 77 LSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFA-VTIASCWIPETLHKHNEDGVSL 155 (362)
Q Consensus 77 ~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~ 155 (362)
+++.+.+.++|..++|.+++.+.+. ..+||+.+ ++.+.+.++ .++.....+|++++......++
T Consensus 154 ~~~~~~~~~~g~~i~~~~~~~~~~~------~~~w~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (447)
T d1pw4a_ 154 VSVWNCAHNVGGGIPPLLFLLGMAW------FNDWHAAL---------YMPAFCAILVALFAFAMMRDTPQSCGLPPIEE 218 (447)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHHHH------TCCSTTCT---------HHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTT
T ss_pred ccccccccchhhhhhhhhhhhHhhh------hhcccccc---------hhhhhhHHHHHHHHHHhcccchhhcccchhhh
Confidence 9999999999999999999887651 34677766 455555444 4444555666554433222211
Q ss_pred cccchhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhH
Q 041273 156 DVSCDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAG 235 (362)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g 235 (362)
.+... .+..++..+++.+......++.++++.++......++..........+.+.|+.+. .+++..+.+
T Consensus 219 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 288 (447)
T d1pw4a_ 219 YKNDY-----PDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEV-----KHFALDKSS 288 (447)
T ss_dssp TCCC------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTB-----SCCCHHHHH
T ss_pred hhhhc-----ccchhhccccccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccc-----cccccchhh
Confidence 10000 00000111111222334456678888888888888887777777877888888765 788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHH
Q 041273 236 QVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMTGLFL 315 (362)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (362)
.......+..+++. ++.+++.||.++++...........................+. ..+.....++......+....
T Consensus 289 ~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~ 366 (447)
T d1pw4a_ 289 WAYFLYEYAGIPGT-LLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTV-DMICMIVIGFLIYGPVMLIGL 366 (447)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHH-HHHHHHHHHHHHTHHHHHHHH
T ss_pred hhhhcchhhhhhhh-hhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998 8999999999887655444443333322222222111112222 222222323344445566778
Q ss_pred HHhhhccccccCCCC------------------------CCChhHHHHHHHHHHHHHHHhhcccccc
Q 041273 316 LQNRAVSQKRQGAGF------------------------LPGNQMIFFILNLVEALGVILTFKPFLI 358 (362)
Q Consensus 316 ~~~~~~p~~~~~~~~------------------------~~g~~~~f~~~~~~~~i~~~~~~~~~l~ 358 (362)
+..|..|+++.+... ..|+...|++.+++.+++.++.+....+
T Consensus 367 ~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (447)
T d1pw4a_ 367 HALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIG 433 (447)
T ss_dssp HHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888854332110 0156778888888877777666553333
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=1.3e-20 Score=166.20 Aligned_cols=310 Identities=10% Similarity=0.061 Sum_probs=186.7
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHH----HHHHHHhhhcCcch-hHHHHHHhhhc--cccch
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAI----ATRFLLGALNGLLG-PIKAYACEILR--DQHKT 74 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~----~~r~l~G~~~~~~~-~~~~~i~~~~~--~~~r~ 74 (362)
++++++|+++||+||||+++.+.....++..+..+..+..... ..+.+.+.+.+... +......+..+ ++++.
T Consensus 58 i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (417)
T d1pv7a_ 58 LFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSN 137 (417)
T ss_dssp HTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhH
Confidence 5789999999999999999999999999988888877655543 44445444444333 33333333333 34556
Q ss_pred hhHHHHHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHhhcccccCCCCcCCcc
Q 041273 75 LGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLHKHNEDGVS 154 (362)
Q Consensus 75 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 154 (362)
+..+........+..++|.+++.+.+ .+|+..+ ........+...+..+..+|++++.++++++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (417)
T d1pv7a_ 138 FEFGRARMFGCVGWALGASIVGIMFT--------INNQFVF--------WLGSGCALILAVLLFFAKTDAPSSATVANAV 201 (417)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHH--------HCHHHHH--------HHHHHHHHHHHHHHHSSCCCSCSSSCSSHHH
T ss_pred HHHHHHhhhhcccccccccccccccc--------ccccccc--------cchhhHHHHHHHHHHHHhcccccchhhhhhh
Confidence 67788888899999999999999875 2332222 1233333333455556666665544333222
Q ss_pred ccccchhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhh
Q 041273 155 LDVSCDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENA 234 (362)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~ 234 (362)
.+ ++++.......+..+++..+....................+.+.... ....+.+....
T Consensus 202 ~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 261 (417)
T d1pv7a_ 202 GA------------------NHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSF--FATGEQGTRVF 261 (417)
T ss_dssp HS------------------CCCCCCHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--SSCHHHHHHHH
T ss_pred hh------------------hcccccccccccccccccccchhhhhHHHHHHHHhhhcccccccccc--ccccccchhhh
Confidence 11 00111122333344444444444443333333333333333333222 12234556667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHH
Q 041273 235 GQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMTGLF 314 (362)
Q Consensus 235 g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (362)
+.......++..++. ...+++.||.++++.+..+..+..+..+.+.+.++ .+. ..+...+.+.+.....+...
T Consensus 262 ~~~~~~~~~~~~~~~-~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~l~g~~~~~~~~~~~ 334 (417)
T d1pv7a_ 262 GYVTTMGELLNASIM-FFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATS-----ALE-VVILKTLHMFEVPFLLVGCF 334 (417)
T ss_dssp HHHHHHHHHHHHHHH-TTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCC-----HHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccch-hhhhhhhcccccccchhhhHHHHHHhhhccccccc-----cch-hhHHHHHHHHHHHHHHHHHH
Confidence 777788888888887 89999999999999999888887776666544332 111 22233333334455668888
Q ss_pred HHHhhhccccccCCC---C--CC-------------------ChhHHHHHHHHHHHHHHHhhcc
Q 041273 315 LLQNRAVSQKRQGAG---F--LP-------------------GNQMIFFILNLVEALGVILTFK 354 (362)
Q Consensus 315 ~~~~~~~p~~~~~~~---~--~~-------------------g~~~~f~~~~~~~~i~~~~~~~ 354 (362)
.+.+|..|++..+.. . .. |++.+|++.+++.+++.++.++
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 398 (417)
T d1pv7a_ 335 KYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp HHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
Confidence 899999985543211 0 11 5788888888888887776654
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.25 E-value=2.4e-12 Score=112.36 Aligned_cols=127 Identities=10% Similarity=0.039 Sum_probs=106.3
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTL 80 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~ 80 (362)
++..+.+++.||+|||+.+..+.++.+++.+...+.++.+.+++..++.|++.+...+. .+++.|.+|+|+|+++.+..
T Consensus 274 ~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (417)
T d1pv7a_ 274 SIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVC 353 (417)
T ss_dssp HHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHH
T ss_pred cchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999998887777 99999999999999999975
Q ss_pred -HHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHH-HHHHhhcccc
Q 041273 81 -STAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAV-TIASCWIPET 144 (362)
Q Consensus 81 -~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~ 144 (362)
+....+|..++|.+.|++.+ ..|++..| ++.+++.++. ++..+.++++
T Consensus 354 ~~~~~~~g~~i~~~~~G~l~~-------~~g~~~~~---------~~~~~~~~~~~~~~~~~l~~~ 403 (417)
T d1pv7a_ 354 FCFFKQLAMIFMSVLAGNMYE-------SIGFQGAY---------LVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp HTTTHHHHHHHHHHHHHHHHH-------HHCHHHHH---------HHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHCHHHHH---------HHHHHHHHHHHHHHHHhhcCC
Confidence 56678999999999999998 67776655 5555555543 4444555544
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=98.79 E-value=1.8e-08 Score=88.52 Aligned_cols=96 Identities=9% Similarity=-0.027 Sum_probs=72.8
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 041273 227 LSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLS 306 (362)
Q Consensus 227 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (362)
.|+|..+.|++.+...++..+++ ++.|++.||+|||+.+..+.++..++.++.++....... .....+...+.+.+.
T Consensus 54 ~g~s~~~~g~~~s~~~~~~~~~~-~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~ 130 (447)
T d1pw4a_ 54 QGFSRGDLGFALSGISIAYGFSK-FIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSS--IAVMFVLLFLCGWFQ 130 (447)
T ss_dssp STTCSSCHHHHHHHHHHHHHHHH-HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSS--SSHHHHHHHHHHHHH
T ss_pred hCcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhh--HHHHHHHHHHHHHhh
Confidence 69999999999999999999998 999999999999999999999888887776655432211 112333334444455
Q ss_pred HHhhhHHHHHHhhhccccc
Q 041273 307 VSIMTGLFLLQNRAVSQKR 325 (362)
Q Consensus 307 ~~~~~~~~~~~~~~~p~~~ 325 (362)
....+....++.|.+|+++
T Consensus 131 ~~~~~~~~~~i~~~~~~~~ 149 (447)
T d1pw4a_ 131 GMGWPPCGRTMVHWWSQKE 149 (447)
T ss_dssp HHTHHHHHHHHHTTCTTTH
T ss_pred hhhhhHHHHHHHHHHHhhc
Confidence 5667888899999888543
|