Citrus Sinensis ID: 041300

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710------
Protein Sequence
SNEEADALLKWKASLQSHNQSLLPSWTNASTNVSSKISPCAWYGISCNDAGRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGVKGMQPCKVFSSHKQNSGGKWFAVVFPVLGALFVSMALIAIFILRKQKSDSGDRQSSNQNPQGLFSILNFEGKLVYDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAILS
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHcccccccccccccccccccccccccccEEEEEEccccccEEEEEEcccccEEEEccccccccccccEEEcccccccccccccccccccccEEEccccccEEcccccccccccccEEEEccccccccccccccccccccEEEcccccccccccHHcccccccccEEccccEEEEccccccccccccccccccccccccccccccccEEccccEEEEcccccccccccccEEccccccccccccccccccccccEEccccEEEEcccccccccccccEEEcccccccccccccccccccccEEEccccEEEEEccccccccccccEEEccccEEcccccHHHHccccccEEEcccccccccccHHccccccccEEEcccccccccccHHHHccccccccccccccccccccHHHHccccccccccccccccccccHHHHccccccEEcccccccccccHHHHcccccccccccccccccccccHHHcccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHcccccccEEEEcccccEEEEEcccccEEEEEEEEcccccccccccHHHHHHHHHHccccccccccEEEEEEEccccEEEEcccccccHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHcccccccccccccccccccccccccccEEEEEcccccEEEEEcccccccccccHHHHHccccccEEEcccccccccccHHHHccccccEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccccEEEcccccHHHccccccEEEEEccccccccccHHHcccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEEccccccccccHHHcccccccEEEEccccccccccHHHcccccccEEEEcEccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHHccccccEEEcccccccccccHHHHccccccEEEEcccccccccccccccccccHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEcccccccHHHHHHHHccccHHcEEEccccEEEEEEEcccccEEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHEEcccccccEEEEEccccccHHHHHc
Coil and Loop (DISEMBL)
SNEEADALLKWKASLQSHnqsllpswtnastnvsskispcawygiscndagrvtnislrntglsgtlrdfsfssfpqlvhldlslngffgtipsqignltKLSYISldsnqlsgkipaeVGLLTHLKVLSFQfneldgsippevcqlssieELFLYsnhlngslppflgnLSNIVRLYINNNSLSGSILTNIGNLKFLFELDlsflplsvgnltnlkslglmdnhlsgsippsfgnsMLTWLTLsgnhftgylphnicrgGLLEAFIVSenhfqgtipeslrNCTSLIRVRLngnnltgnisealglypnltfidlsrnnfygeissnwgkcpklgtlnvsmnnitggipreignmSQLQALDLSLNHIVgeipkelgklnSLTKLILRgnqltgrlpteIGSLIeleyldfsankfnnsvpESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSeldashnlfggeipfQICSLKSLEKLNLshnnlsglipncfegmhglsiidisdnqlqgpvpnstafrnapvealegnkelcggvkgmqpckvfsshkqnsggkwFAVVFPVLGALFVSMALIAIFILRKqksdsgdrqssnqnpqgLFSILNFEGKLVYDEIVREtndfdaeycigngghgsvyraelpsgevVAVKKfhssipcdqiaDQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAILS
Flexible Loop (DISEMBL)
SNEEADALLKWKASLQSHNQSLLPSWTNASTNVSSKISPCAWYGISCNDAGRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILrgnqltgrLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGVKGMQPCKVFSSHKQNSGGKWFAVVFPVLGALFVSMALIAIFILRKQksdsgdrqssnqnpqGLFSILNFEGKLVYDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAILS
Low Complexity Region (SEG)
SNEEADALLKWKASLQSHNQSLLPSWTNASTNVSSKISPCAWYGISCNDAGRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPEslgnllklhylglsnnQFvlelpkeleklvqlSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGVKGMQPCKVFSSHKQNSGGKWFAVVFPVLGALFVSMALIAIFILRKQKSDSGDRQSSNQNPQGLFSILNFEGKLVYDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAILS
Disordered region (IsUnstruct)
*************************WTNASTNVSSKISPCAWYGISCNDAGRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQL****************ALEGNKELCGGVKGMQPCKVFSSHKQNSGGKWFAVVFPVLGALFVSMALIAIFILR*****************GLFSILNFEGKLVYDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAA***
Disordered Region (DISOPRED)
SNEEADALLKWKASLQS*NQSLLPSWTNASTNVSSKISPCAWYGISCNDAGRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGV*********************AVVFPVLGALFVSMALIAIFIL**********************ILNFEGKLVYDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAILS
Disordered Region (DISEMBL)
SNEEADALLKWKASLQSHNQSLLPSWTNASTNVSSKISPCAWYGISCNDAGRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGVKGMQPCKVFSSHKQNSGGKWFAVVFPVLGALFVSMALIAIFILRK*************NPQGLFSILNFEGKLVYDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAILS
Disordered Region (DISPRO)
*****DALLKWKASLQSHN*SLLPSW**********ISPCAWYGISCNDAGRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGVKGMQPCKVFSS**QNSGGKWFAVVFPVLGALFVSMALIAIFILRKQKSDSGD*******PQGLFSILNFEGKLVYDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSI***QIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAILS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
SNEEADALLKWKASLQSHNQSLLPSWTNASTNVSSKISPCAWYGISCNDAGRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGVKGMQPCKVFSSHKQNSGGKWFAVVFPVLGALFVSMALIAIFILRKQKSDSGDRQSSNQNPQGLFSILNFEGKLVYDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAILS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	716	2.2.26 [Sep-21-2011]
Q8VZG8	1045	Probable LRR receptor-lik	yes	no	0.924	0.633	0.453	1e-167
Q9LP24	1120	Probable leucine-rich rep	no	no	0.882	0.564	0.452	1e-157
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.912	0.593	0.343	7e-93
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.937	0.535	0.336	6e-90
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.916	0.525	0.345	2e-89
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.928	0.603	0.337	5e-89
O49318	1124	Probable leucine-rich rep	no	no	0.912	0.580	0.337	4e-87
Q9SGP2	996	Receptor-like protein kin	no	no	0.967	0.695	0.320	8e-86
Q9LHP4	1141	Receptor-like protein kin	no	no	0.853	0.535	0.336	7e-85
Q9M2Z1	1002	Leucine-rich repeat recep	no	no	0.959	0.685	0.327	1e-82

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  590 bits (1520), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 307/677 (45%), Positives = 453/677 (66%), Gaps = 15/677 (2%)

Query: 52  RVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQ 111
           +VT I++ +  L+G +   SF +  +LV+L L +N   G+IPS+IGNL  L  + LD N 
Sbjct: 191 KVTEIAIYDNLLTGPIPS-SFGNLTKLVNLYLFINSLSGSIPSEIGNLPNLRELCLDRNN 249

Query: 112 LSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNL 171
           L+GKIP+  G L ++ +L+   N+L G IPPE+  +++++ L L++N L G +P  LGN+
Sbjct: 250 LTGKIPSSFGNLKNVTLLNMFENQLSGEIPPEIGNMTALDTLSLHTNKLTGPIPSTLGNI 309

Query: 172 SNIVRLYINNNSLSGSILTNIGNLKFLFELDLSF------LPLSVGNLTNLKSLGLMDNH 225
             +  L++  N L+GSI   +G ++ + +L++S       +P S G LT L+ L L DN 
Sbjct: 310 KTLAVLHLYLNQLNGSIPPELGEMESMIDLEISENKLTGPVPDSFGKLTALEWLFLRDNQ 369

Query: 226 LSGSIPPSFGNSM-LTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNC 284
           LSG IPP   NS  LT L L  N+FTG+LP  ICRGG LE   + +NHF+G +P+SLR+C
Sbjct: 370 LSGPIPPGIANSTELTVLQLDTNNFTGFLPDTICRGGKLENLTLDDNHFEGPVPKSLRDC 429

Query: 285 TSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNN 344
            SLIRVR  GN+ +G+ISEA G+YP L FIDLS NNF+G++S+NW +  KL    +S N+
Sbjct: 430 KSLIRVRFKGNSFSGDISEAFGVYPTLNFIDLSNNNFHGQLSANWEQSQKLVAFILSNNS 489

Query: 345 ITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSL 404
           ITG IP EI NM+QL  LDLS N I GE+P+ +  +N ++KL L GN+L+G++P+ I  L
Sbjct: 490 ITGAIPPEIWNMTQLSQLDLSSNRITGELPESISNINRISKLQLNGNRLSGKIPSGIRLL 549

Query: 405 IELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNL 464
             LEYLD S+N+F++ +P +L NL +L+Y+ LS N     +P+ L KL QL  LD S+N 
Sbjct: 550 TNLEYLDLSSNRFSSEIPPTLNNLPRLYYMNLSRNDLDQTIPEGLTKLSQLQMLDLSYNQ 609

Query: 465 FGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNSTAFR 524
             GEI  Q  SL++LE+L+LSHNNLSG IP  F+ M  L+ +D+S N LQGP+P++ AFR
Sbjct: 610 LDGEISSQFRSLQNLERLDLSHNNLSGQIPPSFKDMLALTHVDVSHNNLQGPIPDNAAFR 669

Query: 525 NAPVEALEGNKELCGGV---KGMQPCKVFSSHKQNSGGKWFA-VVFPVLGALFVSMALIA 580
           NAP +A EGNK+LCG V   +G++PC + SS K +        ++ P++GA+ +      
Sbjct: 670 NAPPDAFEGNKDLCGSVNTTQGLKPCSITSSKKSHKDRNLIIYILVPIIGAIIILSVCAG 729

Query: 581 IFILRKQKSDSGDRQSSNQNPQGLFSILNFEGKLVYDEIVRETNDFDAEYCIGNGGHGSV 640
           IFI  ++++   +  + +++     SI +F+GK+ Y EI++ T +FD +Y IG GGHG V
Sbjct: 730 IFICFRKRTKQIEEHTDSESGGETLSIFSFDGKVRYQEIIKATGEFDPKYLIGTGGHGKV 789

Query: 641 YRAELPSGEVVAVKKFHSSIPC--DQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQH 698
           Y+A+LP+  ++AVKK + +        + ++EFL E++ALTEIRHRN+VK +GFCSH ++
Sbjct: 790 YKAKLPNA-IMAVKKLNETTDSSISNPSTKQEFLNEIRALTEIRHRNVVKLFGFCSHRRN 848

Query: 699 SFLVYEFLERGSLAAIL 715
           +FLVYE++ERGSL  +L
Sbjct: 849 TFLVYEYMERGSLRKVL 865

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  555 bits (1431), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 307/678 (45%), Positives = 437/678 (64%), Gaps = 46/678 (6%)

Query: 78  LVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELD 137
           + +L LS N   G+IPS +GNL  L+ +SL  N L+G IP ++G +  +  L    N+L 
Sbjct: 272 MTNLALSQNKLTGSIPSSLGNLKNLTLLSLFQNYLTGGIPPKLGNIESMIDLELSNNKLT 331

Query: 138 GSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKF 197
           GSIP  +  L ++  L+LY N+L G +PP LGN+ +++ L +NNN L+GSI ++ GNLK 
Sbjct: 332 GSIPSSLGNLKNLTILYLYENYLTGVIPPELGNMESMIDLQLNNNKLTGSIPSSFGNLKN 391

Query: 198 ------------------------LFELDLS------FLPLSVGNLTNLKSLGLMDNHLS 227
                                   +  LDLS       +P S GN T L+SL L  NHLS
Sbjct: 392 LTYLYLYLNYLTGVIPQELGNMESMINLDLSQNKLTGSVPDSFGNFTKLESLYLRVNHLS 451

Query: 228 GSIPPSFGNS-MLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTS 286
           G+IPP   NS  LT L L  N+FTG+ P  +C+G  L+   +  NH +G IP+SLR+C S
Sbjct: 452 GAIPPGVANSSHLTTLILDTNNFTGFFPETVCKGRKLQNISLDYNHLEGPIPKSLRDCKS 511

Query: 287 LIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNIT 346
           LIR R  GN  TG+I EA G+YP+L FID S N F+GEISSNW K PKLG L +S NNIT
Sbjct: 512 LIRARFLGNKFTGDIFEAFGIYPDLNFIDFSHNKFHGEISSNWEKSPKLGALIMSNNNIT 571

Query: 347 GGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIE 406
           G IP EI NM+QL  LDLS N++ GE+P+ +G L +L++L L GNQL+GR+P  +  L  
Sbjct: 572 GAIPTEIWNMTQLVELDLSTNNLFGELPEAIGNLTNLSRLRLNGNQLSGRVPAGLSFLTN 631

Query: 407 LEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFG 466
           LE LD S+N F++ +P++  + LKLH + LS N+F   +P+ L KL QL++LD SHN   
Sbjct: 632 LESLDLSSNNFSSEIPQTFDSFLKLHDMNLSRNKFDGSIPR-LSKLTQLTQLDLSHNQLD 690

Query: 467 GEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNSTAFRNA 526
           GEIP Q+ SL+SL+KL+LSHNNLSGLIP  FEGM  L+ +DIS+N+L+GP+P++  FR A
Sbjct: 691 GEIPSQLSSLQSLDKLDLSHNNLSGLIPTTFEGMIALTNVDISNNKLEGPLPDTPTFRKA 750

Query: 527 PVEALEGNKELCGGV--KGMQPCKVFSSHKQNSGGKWFAVVFPVLGALFVSMALIA---I 581
             +ALE N  LC  +  + ++PC+     K+N G     ++ P+LG L + +++ A    
Sbjct: 751 TADALEENIGLCSNIPKQRLKPCRELKKPKKN-GNLVVWILVPILGVLVI-LSICANTFT 808

Query: 582 FILRKQKSDSGDRQSSNQNPQGLFSILNFEGKLVYDEIVRETNDFDAEYCIGNGGHGSVY 641
           + +RK+K  +G R +  +  + + SI + +GK  Y +I+  TN+FD  + IG GG+  VY
Sbjct: 809 YCIRKRKLQNG-RNTDPETGENM-SIFSVDGKFKYQDIIESTNEFDPTHLIGTGGYSKVY 866

Query: 642 RAELPSGEVVAVKKFHSSIPCDQIAD---QKEFLTEVQALTEIRHRNIVKFYGFCSHAQH 698
           RA L    ++AVK+ H +I  ++I+    ++EFL EV+ALTEIRHRN+VK +GFCSH +H
Sbjct: 867 RANL-QDTIIAVKRLHDTID-EEISKPVVKQEFLNEVKALTEIRHRNVVKLFGFCSHRRH 924

Query: 699 SFLVYEFLERGSLAAILS 716
           +FL+YE++E+GSL  +L+
Sbjct: 925 TFLIYEYMEKGSLNKLLA 942

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  342 bits (876), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 232/675 (34%), Positives = 338/675 (50%), Gaps = 22/675 (3%)

Query: 57  SLRNTGLSGTLRDFSF----SSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQL 112
           SL+  GL+  L + S          L  L L  N   G IP  +GN+++L  ++L  N  
Sbjct: 212 SLKVLGLAENLLEGSLPKQLEKLQNLTDLILWQNRLSGEIPPSVGNISRLEVLALHENYF 271

Query: 113 SGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLS 172
           +G IP E+G LT +K L    N+L G IP E+  L    E+    N L G +P   G++ 
Sbjct: 272 TGSIPREIGKLTKMKRLYLYTNQLTGEIPREIGNLIDAAEIDFSENQLTGFIPKEFGHIL 331

Query: 173 NIVRLYINNNSLSGSILTNIGNLKFLFELDLSF------LPLSVGNLTNLKSLGLMDNHL 226
           N+  L++  N L G I   +G L  L +LDLS       +P  +  L  L  L L DN L
Sbjct: 332 NLKLLHLFENILLGPIPRELGELTLLEKLDLSINRLNGTIPQELQFLPYLVDLQLFDNQL 391

Query: 227 SGSIPPSFG-NSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCT 285
            G IPP  G  S  + L +S N  +G +P + CR   L    +  N   G IP  L+ C 
Sbjct: 392 EGKIPPLIGFYSNFSVLDMSANSLSGPIPAHFCRFQTLILLSLGSNKLSGNIPRDLKTCK 451

Query: 286 SLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNI 345
           SL ++ L  N LTG++   L    NLT ++L +N   G IS++ GK   L  L ++ NN 
Sbjct: 452 SLTKLMLGDNQLTGSLPIELFNLQNLTALELHQNWLSGNISADLGKLKNLERLRLANNNF 511

Query: 346 TGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLI 405
           TG IP EIGN++++   ++S N + G IPKELG   ++ +L L GN+ +G +  E+G L+
Sbjct: 512 TGEIPPEIGNLTKIVGFNISSNQLTGHIPKELGSCVTIQRLDLSGNKFSGYIAQELGQLV 571

Query: 406 ELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLS-ELDASHNL 464
            LE L  S N+    +P S G+L +L  L L  N     +P EL KL  L   L+ SHN 
Sbjct: 572 YLEILRLSDNRLTGEIPHSFGDLTRLMELQLGGNLLSENIPVELGKLTSLQISLNISHNN 631

Query: 465 FGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNSTAFR 524
             G IP  + +L+ LE L L+ N LSG IP     +  L I +IS+N L G VP++  F+
Sbjct: 632 LSGTIPDSLGNLQMLEILYLNDNKLSGEIPASIGNLMSLLICNISNNNLVGTVPDTAVFQ 691

Query: 525 NAPVEALEGNKELCGGVKG-MQPCKVFSSHKQN------SGGKWFAVVFPVLGALFVSMA 577
                   GN  LC   +   QP    S  K N         K   +   V+G++F+ + 
Sbjct: 692 RMDSSNFAGNHGLCNSQRSHCQPLVPHSDSKLNWLINGSQRQKILTITCIVIGSVFL-IT 750

Query: 578 LIAIFILRKQKSDSGDRQSSNQNPQGLFSILNFEGKLVYDEIVRETNDFDAEYCIGNGGH 637
            + +    K++  +         P  + S    +    Y  +V  T +F  +  +G G  
Sbjct: 751 FLGLCWTIKRREPAFVALEDQTKPDVMDSYYFPKKGFTYQGLVDATRNFSEDVVLGRGAC 810

Query: 638 GSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ 697
           G+VY+AE+  GEV+AVKK +S    +  +    F  E+  L +IRHRNIVK YGFC H  
Sbjct: 811 GTVYKAEMSGGEVIAVKKLNSR--GEGASSDNSFRAEISTLGKIRHRNIVKLYGFCYHQN 868

Query: 698 HSFLVYEFLERGSLA 712
            + L+YE++ +GSL 
Sbjct: 869 SNLLLYEYMSKGSLG 883

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  332 bits (851), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 240/714 (33%), Positives = 363/714 (50%), Gaps = 43/714 (6%)

Query: 20   QSLLPSWTNASTNVSSKISPCAWYGISCNDAGRVTNISLRNTGLSGTLRDFSFSSFPQLV 79
            + L  S T  S  + ++IS C    +          + L N  L+G + D S     +L 
Sbjct: 340  KQLFLSETQLSGEIPAEISNCQSLKL----------LDLSNNTLTGQIPD-SLFQLVELT 388

Query: 80   HLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGS 139
            +L L+ N   GT+ S I NLT L   +L  N L GK+P E+G L  L+++    N   G 
Sbjct: 389  NLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLEGKVPKEIGFLGKLEIMYLYENRFSGE 448

Query: 140  IPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLF 199
            +P E+   + ++E+  Y N L+G +P  +G L ++ RL++  N L G+I  ++GN   + 
Sbjct: 449  MPVEIGNCTRLQEIDWYGNRLSGEIPSSIGRLKDLTRLHLRENELVGNIPASLGNCHQMT 508

Query: 200  ELDLS------FLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGN-SMLTWLTLSGNHFTGY 252
             +DL+       +P S G LT L+   + +N L G++P S  N   LT +  S N F G 
Sbjct: 509  VIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQGNLPDSLINLKNLTRINFSSNKFNGS 568

Query: 253  LPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLT 312
            +   +C      +F V+EN F+G IP  L   T+L R+RL  N  TG I    G    L+
Sbjct: 569  ISP-LCGSSSYLSFDVTENGFEGDIPLELGKSTNLDRLRLGKNQFTGRIPRTFGKISELS 627

Query: 313  FIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGE 372
             +D+SRN+  G I    G C KL  ++++ N ++G IP  +G +  L  L LS N  VG 
Sbjct: 628  LLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVGS 687

Query: 373  IPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLH 432
            +P E+  L ++  L L GN L G +P EIG+L  L  L+   N+ +  +P ++G L KL 
Sbjct: 688  LPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQALNALNLEENQLSGPLPSTIGKLSKLF 747

Query: 433  YLGLSNNQFVLELPKELEKLVQL-SELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSG 491
             L LS N    E+P E+ +L  L S LD S+N F G IP  I +L  LE L+LSHN L G
Sbjct: 748  ELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVG 807

Query: 492  LIPNCFEGMHGLSIIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGVKGMQPCKVFS 551
             +P     M  L  +++S N L+G +     F     +A  GN  LCG    +  C    
Sbjct: 808  EVPGQIGDMKSLGYLNLSYNNLEGKL--KKQFSRWQADAFVGNAGLCG--SPLSHCNRAG 863

Query: 552  SHKQNSGGKWFAVVFPVLGAL-FVSMALIAIFILRKQKSDSGDR-----------QSSNQ 599
            S  Q S      V+   + +L  +++ ++ I +  KQ  D   +            SS+Q
Sbjct: 864  SKNQRSLSPKTVVIISAISSLAAIALMVLVIILFFKQNHDLFKKVRGGNSAFSSNSSSSQ 923

Query: 600  NPQGLFSILNFEGKLVYDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSS 659
             P  LFS    +  + +D+I+  T+  + E+ IG+GG G VY+AEL +GE +AVKK    
Sbjct: 924  AP--LFSNGGAKSDIKWDDIMEATHYLNEEFMIGSGGSGKVYKAELKNGETIAVKKI--- 978

Query: 660  IPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQH--SFLVYEFLERGSL 711
            +  D +   K F  EV+ L  IRHR++VK  G+CS      + L+YE++  GS+
Sbjct: 979  LWKDDLMSNKSFNREVKTLGTIRHRHLVKLMGYCSSKADGLNLLIYEYMANGSV 1032

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  330 bits (847), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 246/713 (34%), Positives = 359/713 (50%), Gaps = 57/713 (7%)

Query: 47   CNDAGRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYIS 106
            C++   +  + L  T LSG +     S    L  LDLS N   G+IP  +  L +L+ + 
Sbjct: 332  CSNNTNLEQLVLSGTQLSGEI-PVELSKCQSLKQLDLSNNSLAGSIPEALFELVELTDLY 390

Query: 107  LDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPP 166
            L +N L G +   +  LT+L+ L    N L+G +P E+  L  +E LFLY N  +G +P 
Sbjct: 391  LHNNTLEGTLSPSISNLTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQ 450

Query: 167  FLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSF------LPLSVGNLTNLKSLG 220
             +GN +++  + +  N   G I  +IG LK L  L L        LP S+GN   L  L 
Sbjct: 451  EIGNCTSLKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELVGGLPASLGNCHQLNILD 510

Query: 221  LMDNHLSGSIPPSFG------------NSM-------------LTWLTLSGNHFTGYLPH 255
            L DN LSGSIP SFG            NS+             LT + LS N   G + H
Sbjct: 511  LADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTI-H 569

Query: 256  NICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFID 315
             +C      +F V+ N F+  IP  L N  +L R+RL  N LTG I   LG    L+ +D
Sbjct: 570  PLCGSSSYLSFDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLD 629

Query: 316  LSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPK 375
            +S N   G I      C KL  ++++ N ++G IP  +G +SQL  L LS N  V  +P 
Sbjct: 630  MSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPT 689

Query: 376  ELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLG 435
            EL     L  L L GN L G +P EIG+L  L  L+   N+F+ S+P+++G L KL+ L 
Sbjct: 690  ELFNCTKLLVLSLDGNSLNGSIPQEIGNLGALNVLNLDKNQFSGSLPQAMGKLSKLYELR 749

Query: 436  LSNNQFVLELPKELEKLVQL-SELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIP 494
            LS N    E+P E+ +L  L S LD S+N F G+IP  I +L  LE L+LSHN L+G +P
Sbjct: 750  LSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVP 809

Query: 495  NCFEGMHGLSIIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGVKGMQPC-KVFSSH 553
                 M  L  +++S N L G +     F   P ++  GN  LCG    +  C +V S++
Sbjct: 810  GSVGDMKSLGYLNVSFNNLGGKL--KKQFSRWPADSFLGNTGLCG--SPLSRCNRVRSNN 865

Query: 554  KQNSGGKWFAVVFPVLGAL-FVSMALIAIFILRKQKSD------------SGDRQSSNQN 600
            KQ        V+   + AL  + + ++ I +  KQ+ D            +    SS   
Sbjct: 866  KQQGLSARSVVIISAISALTAIGLMILVIALFFKQRHDFFKKVGHGSTAYTSSSSSSQAT 925

Query: 601  PQGLFSILNFEGKLVYDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSI 660
             + LF     +  + +++I+  T++   E+ IG+GG G VY+AEL +GE VAVKK    +
Sbjct: 926  HKPLFRNGASKSDIRWEDIMEATHNLSEEFMIGSGGSGKVYKAELENGETVAVKKI---L 982

Query: 661  PCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQH--SFLVYEFLERGSL 711
              D +   K F  EV+ L  IRHR++VK  G+CS      + L+YE+++ GS+
Sbjct: 983  WKDDLMSNKSFSREVKTLGRIRHRHLVKLMGYCSSKSEGLNLLIYEYMKNGSI 1035

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  329 bits (843), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 240/712 (33%), Positives = 357/712 (50%), Gaps = 47/712 (6%)

Query: 46  SCNDAGRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYI 105
           S  +  R+T+       +SG+L          LV L L+ N   G +P +IG L KLS +
Sbjct: 188 SIGNLKRLTSFRAGQNMISGSLPS-EIGGCESLVMLGLAQNQLSGELPKEIGMLKKLSQV 246

Query: 106 SLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLP 165
            L  N+ SG IP E+   T L+ L+   N+L G IP E+  L S+E L+LY N LNG++P
Sbjct: 247 ILWENEFSGFIPREISNCTSLETLALYKNQLVGPIPKELGDLQSLEFLYLYRNGLNGTIP 306

Query: 166 PFLGNLSNIVRLYINNNSLSGSILTNIGNLK-----FLFELDLS-FLPLSVGNLTNLKSL 219
             +GNLS  + +  + N+L+G I   +GN++     +LFE  L+  +P+ +  L NL  L
Sbjct: 307 REIGNLSYAIEIDFSENALTGEIPLELGNIEGLELLYLFENQLTGTIPVELSTLKNLSKL 366

Query: 220 GLMDNHLSGSIPPSFGN-SMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIP 278
            L  N L+G IP  F     L  L L  N  +G +P  +     L    +S+NH  G IP
Sbjct: 367 DLSINALTGPIPLGFQYLRGLFMLQLFQNSLSGTIPPKLGWYSDLWVLDMSDNHLSGRIP 426

Query: 279 ESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTL 338
             L   +++I + L  NNL+GNI   +     L  + L+RNN  G   SN  K   +  +
Sbjct: 427 SYLCLHSNMIILNLGTNNLSGNIPTGITTCKTLVQLRLARNNLVGRFPSNLCKQVNVTAI 486

Query: 339 NVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLP 398
            +  N   G IPRE+GN S LQ L L+ N   GE+P+E+G L+ L  L +  N+LTG +P
Sbjct: 487 ELGQNRFRGSIPREVGNCSALQRLQLADNGFTGELPREIGMLSQLGTLNISSNKLTGEVP 546

Query: 399 TEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSEL 458
           +EI +   L+ LD   N F+ ++P  +G+L +L  L LSNN     +P  L  L +L+EL
Sbjct: 547 SEIFNCKMLQRLDMCCNNFSGTLPSEVGSLYQLELLKLSNNNLSGTIPVALGNLSRLTEL 606

Query: 459 DASHNLFGGEIPFQICSLKSLE-KLNLSHNNL------------------------SGLI 493
               NLF G IP ++ SL  L+  LNLS+N L                        SG I
Sbjct: 607 QMGGNLFNGSIPRELGSLTGLQIALNLSYNKLTGEIPPELSNLVMLEFLLLNNNNLSGEI 666

Query: 494 PNCFEGMHGLSIIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCG----GVKGMQPCKV 549
           P+ F  +  L   + S N L GP+P     RN  + +  GN+ LCG         QP   
Sbjct: 667 PSSFANLSSLLGYNFSYNSLTGPIP---LLRNISMSSFIGNEGLCGPPLNQCIQTQPFAP 723

Query: 550 FSSHKQNSG---GKWFAVVFPVLGALFVSMALIAIFILRKQKSDSGDRQSSNQNPQGLFS 606
             S  +  G    K  A+   V+G + + +  + ++++R+            Q P  +  
Sbjct: 724 SQSTGKPGGMRSSKIIAITAAVIGGVSLMLIALIVYLMRRPVRTVASSAQDGQ-PSEMSL 782

Query: 607 ILNFEGK--LVYDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQ 664
            + F  K    + ++V  T++FD  + +G G  G+VY+A LP+G  +AVKK  S+     
Sbjct: 783 DIYFPPKEGFTFQDLVAATDNFDESFVVGRGACGTVYKAVLPAGYTLAVKKLASNHEGGN 842

Query: 665 IAD-QKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
             +    F  E+  L  IRHRNIVK +GFC+H   + L+YE++ +GSL  IL
Sbjct: 843 NNNVDNSFRAEILTLGNIRHRNIVKLHGFCNHQGSNLLLYEYMPKGSLGEIL 894

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  322 bits (826), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 232/687 (33%), Positives = 347/687 (50%), Gaps = 34/687 (4%)

Query: 60  NTGLSGTLRDFSFSSFPQLVHLDLSL-------NGFFGTIPSQIGNLTKLSYISLDSNQL 112
           N  L G  ++F     P+ + + + L       N F G IP  IGNLT L  ++L  N L
Sbjct: 230 NLKLLGLAQNFISGELPKEIGMLVKLQEVILWQNKFSGFIPKDIGNLTSLETLALYGNSL 289

Query: 113 SGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLS 172
            G IP+E+G +  LK L    N+L+G+IP E+ +LS + E+    N L+G +P  L  +S
Sbjct: 290 VGPIPSEIGNMKSLKKLYLYQNQLNGTIPKELGKLSKVMEIDFSENLLSGEIPVELSKIS 349

Query: 173 NIVRLYINNNSLSGSILTNIGNLKFLFELDLSF------LPLSVGNLTNLKSLGLMDNHL 226
            +  LY+  N L+G I   +  L+ L +LDLS       +P    NLT+++ L L  N L
Sbjct: 350 ELRLLYLFQNKLTGIIPNELSKLRNLAKLDLSINSLTGPIPPGFQNLTSMRQLQLFHNSL 409

Query: 227 SGSIPPSFGNSMLTWLT-LSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCT 285
           SG IP   G     W+   S N  +G +P  IC+   L    +  N   G IP  +  C 
Sbjct: 410 SGVIPQGLGLYSPLWVVDFSENQLSGKIPPFICQQSNLILLNLGSNRIFGNIPPGVLRCK 469

Query: 286 SLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNI 345
           SL+++R+ GN LTG     L    NL+ I+L +N F G +    G C KL  L+++ N  
Sbjct: 470 SLLQLRVVGNRLTGQFPTELCKLVNLSAIELDQNRFSGPLPPEIGTCQKLQRLHLAANQF 529

Query: 346 TGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLI 405
           +  +P EI  +S L   ++S N + G IP E+     L +L L  N   G LP E+GSL 
Sbjct: 530 SSNLPNEISKLSNLVTFNVSSNSLTGPIPSEIANCKMLQRLDLSRNSFIGSLPPELGSLH 589

Query: 406 ELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLS-ELDASHNL 464
           +LE L  S N+F+ ++P ++GNL  L  L +  N F   +P +L  L  L   ++ S+N 
Sbjct: 590 QLEILRLSENRFSGNIPFTIGNLTHLTELQMGGNLFSGSIPPQLGLLSSLQIAMNLSYND 649

Query: 465 FGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNSTAFR 524
           F GEIP +I +L  L  L+L++N+LSG IP  FE +  L   + S N L G +P++  F+
Sbjct: 650 FSGEIPPEIGNLHLLMYLSLNNNHLSGEIPTTFENLSSLLGCNFSYNNLTGQLPHTQIFQ 709

Query: 525 NAPVEALEGNKELCGG-VKGMQPCKV----FSSHKQNSGGKWFAVVFPVLGALFVSMALI 579
           N  + +  GNK LCGG ++   P        SS K  S  +   ++        +S+ LI
Sbjct: 710 NMTLTSFLGNKGLCGGHLRSCDPSHSSWPHISSLKAGSARRGRIIIIVSSVIGGISLLLI 769

Query: 580 AIFI--LRKQKSDSG----DRQSSNQNPQGLFSILNFEGKLVYDEIVRETNDFDAEYCIG 633
           AI +  LR     +     D++   Q     F     + +    +I+  T  F   Y +G
Sbjct: 770 AIVVHFLRNPVEPTAPYVHDKEPFFQESDIYFVP---KERFTVKDILEATKGFHDSYIVG 826

Query: 634 NGGHGSVYRAELPSGEVVAVKKFH---SSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
            G  G+VY+A +PSG+ +AVKK          +       F  E+  L +IRHRNIV+ Y
Sbjct: 827 RGACGTVYKAVMPSGKTIAVKKLESNREGNNNNSNNTDNSFRAEILTLGKIRHRNIVRLY 886

Query: 691 GFCSH--AQHSFLVYEFLERGSLAAIL 715
            FC H  +  + L+YE++ RGSL  +L
Sbjct: 887 SFCYHQGSNSNLLLYEYMSRGSLGELL 913

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SGP2|HSL1_ARATH Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana GN=HSL1 PE=2 SV=1

 Score =  318 bits (816), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 250/781 (32%), Positives = 385/781 (49%), Gaps = 88/781 (11%)

Query: 2   NEEADALLKWKASLQSHNQSLLPSWTNASTNVSSKISPCAWYGISC-NDAGRVTNISLRN 60
           N++   L + K SL   + S L SW       S+  SPC W G+SC  D   VT++ L +
Sbjct: 17  NQDGFILQQVKLSLDDPD-SYLSSWN------SNDASPCRWSGVSCAGDFSSVTSVDLSS 69

Query: 61  TGLSGTLRD-----------------------FSFSSFPQLVHLDLSLNGFFGTIPSQIG 97
             L+G                            + ++   L  LDLS N   G +P  + 
Sbjct: 70  ANLAGPFPSVICRLSNLAHLSLYNNSINSTLPLNIAACKSLQTLDLSQNLLTGELPQTLA 129

Query: 98  NLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYS 157
           ++  L ++ L  N  SG IPA  G   +L+VLS  +N LDG+IPP +  +S+++ L L  
Sbjct: 130 DIPTLVHLDLTGNNFSGDIPASFGKFENLEVLSLVYNLLDGTIPPFLGNISTLKMLNLSY 189

Query: 158 NHLNGS-LPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSF------LPLSV 210
           N  + S +PP  GNL+N+  +++    L G I  ++G L  L +LDL+       +P S+
Sbjct: 190 NPFSPSRIPPEFGNLTNLEVMWLTECHLVGQIPDSLGQLSKLVDLDLALNDLVGHIPPSL 249

Query: 211 GNLTNLKSLGLMDNHLSGSIPPSFGN-SMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVS 269
           G LTN+  + L +N L+G IPP  GN   L  L  S N  TG +P  +CR  L E+  + 
Sbjct: 250 GGLTNVVQIELYNNSLTGEIPPELGNLKSLRLLDASMNQLTGKIPDELCRVPL-ESLNLY 308

Query: 270 ENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNW 329
           EN+ +G +P S+    +L  +R+ GN LTG + + LGL   L ++D+S N F G++ ++ 
Sbjct: 309 ENNLEGELPASIALSPNLYEIRIFGNRLTGGLPKDLGLNSPLRWLDVSENEFSGDLPADL 368

Query: 330 ------------------------GKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLS 365
                                     C  L  + ++ N  +G +P     +  +  L+L 
Sbjct: 369 CAKGELEELLIIHNSFSGVIPESLADCRSLTRIRLAYNRFSGSVPTGFWGLPHVNLLELV 428

Query: 366 LNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESL 425
            N   GEI K +G  ++L+ LIL  N+ TG LP EIGSL  L  L  S NKF+ S+P+SL
Sbjct: 429 NNSFSGEISKSIGGASNLSLLILSNNEFTGSLPEEIGSLDNLNQLSASGNKFSGSLPDSL 488

Query: 426 GNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLS 485
            +L +L  L L  NQF  EL   ++   +L+EL+ + N F G+IP +I SL  L  L+LS
Sbjct: 489 MSLGELGTLDLHGNQFSGELTSGIKSWKKLNELNLADNEFTGKIPDEIGSLSVLNYLDLS 548

Query: 486 HNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGVKGMQ 545
            N  SG IP   + +  L+ +++S N+L G +P S A ++    +  GN  LCG +KG+ 
Sbjct: 549 GNMFSGKIPVSLQSLK-LNQLNLSYNRLSGDLPPSLA-KDMYKNSFIGNPGLCGDIKGL- 605

Query: 546 PCKVFSSHKQNSGGKWFAVVFPVLGALFVSMALIAIFILRKQKSDSGDRQSSNQNPQGLF 605
            C   +  K+  G  W      VL A+ V +A +A F  + +          ++     +
Sbjct: 606 -CGSENEAKKR-GYVWLLRSIFVLAAM-VLLAGVAWFYFKYRTFKKARAMERSK-----W 657

Query: 606 SILNFEGKLVYDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHS-----SI 660
           ++++F      +  + E+   D +  IG G  G VY+  L +GE VAVK+  +     + 
Sbjct: 658 TLMSFHKLGFSEHEILES--LDEDNVIGAGASGKVYKVVLTNGETVAVKRLWTGSVKETG 715

Query: 661 PCDQIADQK------EFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAI 714
            CD     K       F  EV+ L +IRH+NIVK +  CS      LVYE++  GSL  +
Sbjct: 716 DCDPEKGYKPGVQDEAFEAEVETLGKIRHKNIVKLWCCCSTRDCKLLVYEYMPNGSLGDL 775

Query: 715 L 715
           L
Sbjct: 776 L 776

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  315 bits (808), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 229/680 (33%), Positives = 343/680 (50%), Gaps = 69/680 (10%)

Query: 90  GTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSS 149
           G IPS+IG+ + L+ + L    +SG +P+ +G L  L+ LS     + G IP ++   S 
Sbjct: 216 GQIPSEIGDCSNLTVLGLAETSVSGNLPSSLGKLKKLETLSIYTTMISGEIPSDLGNCSE 275

Query: 150 IEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSF---- 205
           + +LFLY N L+GS+P  +G L+ + +L++  NSL G I   IGN   L  +DLS     
Sbjct: 276 LVDLFLYENSLSGSIPREIGQLTKLEQLFLWQNSLVGGIPEEIGNCSNLKMIDLSLNLLS 335

Query: 206 --LPLSVGNLTNLKSLGLMDNHLSGSIPPSFGN-SMLTWLTLSGNHFTGYLPHNICRGGL 262
             +P S+G L+ L+   + DN  SGSIP +  N S L  L L  N  +G +P  +     
Sbjct: 336 GSIPSSIGRLSFLEEFMISDNKFSGSIPTTISNCSSLVQLQLDKNQISGLIPSELGTLTK 395

Query: 263 LEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFY 322
           L  F    N  +G+IP  L +CT L  + L+ N+LTG I   L +  NLT + L  N+  
Sbjct: 396 LTLFFAWSNQLEGSIPPGLADCTDLQALDLSRNSLTGTIPSGLFMLRNLTKLLLISNSLS 455

Query: 323 GEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNS 382
           G I    G C  L  L +  N ITG IP  IG++ ++  LD S N + G++P E+G  + 
Sbjct: 456 GFIPQEIGNCSSLVRLRLGFNRITGEIPSGIGSLKKINFLDFSSNRLHGKVPDEIGSCSE 515

Query: 383 LTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFV 442
           L  + L  N L G LP  + SL  L+ LD SAN+F+  +P SLG L+ L+ L LS N F 
Sbjct: 516 LQMIDLSNNSLEGSLPNPVSSLSGLQVLDVSANQFSGKIPASLGRLVSLNKLILSKNLFS 575

Query: 443 LELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLE-KLNLSHNNLSGLIPNCFEGMH 501
             +P  L     L  LD   N   GEIP ++  +++LE  LNLS N L+G IP+    ++
Sbjct: 576 GSIPTSLGMCSGLQLLDLGSNELSGEIPSELGDIENLEIALNLSSNRLTGKIPSKIASLN 635

Query: 502 GLSIIDISDNQLQGPV-----------------------PNSTAFRNAPVEALEGNKELC 538
            LSI+D+S N L+G +                       P++  FR    + LEGNK+LC
Sbjct: 636 KLSILDLSHNMLEGDLAPLANIENLVSLNISYNSFSGYLPDNKLFRQLSPQDLEGNKKLC 695

Query: 539 GGVKGMQPCKVFSSHKQNSG----------GKWFAVVFPVLGALFVSMALIAIFILRKQK 588
              +       F ++++ +G           K    +  ++    V M L A+ ++R ++
Sbjct: 696 SSTQD----SCFLTYRKGNGLGDDGDASRTRKLRLTLALLITLTVVLMILGAVAVIRARR 751

Query: 589 SDSGDRQSSNQNPQGL----FSILNFEGKLVYDEIVR---ETNDFDAEYCIGNGGHGSVY 641
           +   +R S            F  LNF      D+I+R   E N       IG G  G VY
Sbjct: 752 NIDNERDSELGETYKWQFTPFQKLNFS----VDQIIRCLVEPN------VIGKGCSGVVY 801

Query: 642 RAELPSGEVVAVKKFHSSIPCDQIADQK------EFLTEVQALTEIRHRNIVKFYGFCSH 695
           RA++ +GEV+AVKK   ++  +   D+K       F  EV+ L  IRH+NIV+F G C +
Sbjct: 802 RADVDNGEVIAVKKLWPAM-VNGGHDEKTKNVRDSFSAEVKTLGTIRHKNIVRFLGCCWN 860

Query: 696 AQHSFLVYEFLERGSLAAIL 715
                L+Y+++  GSL ++L
Sbjct: 861 RNTRLLMYDYMPNGSLGSLL 880

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9M2Z1|BAME2_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2 OS=Arabidopsis thaliana GN=BAM2 PE=1 SV=1

 Score =  308 bits (788), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 254/776 (32%), Positives = 373/776 (48%), Gaps = 89/776 (11%)

Query: 4   EADALLKWKASLQSHNQS-LLPSWTNASTNVSSKISPCAWYGISCNDAGR-VTNISLRNT 61
           E  ALL  K+S      S LL SW N ST        C+W G++C+ + R VT++ L   
Sbjct: 27  ELHALLSLKSSFTIDEHSPLLTSW-NLSTTF------CSWTGVTCDVSLRHVTSLDLSGL 79

Query: 62  GLSGTLR-DFS----------------------FSSFPQLVHLDLSLNGFFGTIPSQIG- 97
            LSGTL  D +                       S+  +L HL+LS N F G+ P ++  
Sbjct: 80  NLSGTLSSDVAHLPLLQNLSLAANQISGPIPPQISNLYELRHLNLSNNVFNGSFPDELSS 139

Query: 98  ------------------------NLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQF 133
                                   NLT+L ++ L  N  SGKIPA  G    L+ L+   
Sbjct: 140 GLVNLRVLDLYNNNLTGDLPVSLTNLTQLRHLHLGGNYFSGKIPATYGTWPVLEYLAVSG 199

Query: 134 NELDGSIPPEVCQLSSIEELFL-YSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNI 192
           NEL G IPPE+  L+++ EL++ Y N     LPP +GNLS +VR    N  L+G I   I
Sbjct: 200 NELTGKIPPEIGNLTTLRELYIGYYNAFENGLPPEIGNLSELVRFDAANCGLTGEIPPEI 259

Query: 193 GNLKFLFELDLSFLPLS---------VGNLTNLKSLGLMDNHLSGSIPPSFGN-SMLTWL 242
           G L+   +LD  FL ++         +G +++LKS+ L +N  +G IP SF     LT L
Sbjct: 260 GKLQ---KLDTLFLQVNAFTGTITQELGLISSLKSMDLSNNMFTGEIPTSFSQLKNLTLL 316

Query: 243 TLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNIS 302
            L  N   G +P  I     LE   + EN+F G+IP+ L     L+ + L+ N LTG + 
Sbjct: 317 NLFRNKLYGAIPEFIGEMPELEVLQLWENNFTGSIPQKLGENGRLVILDLSSNKLTGTLP 376

Query: 303 EALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQAL 362
             +     L  +    N  +G I  + GKC  L  + +  N + G IP+E+  + +L  +
Sbjct: 377 PNMCSGNRLMTLITLGNFLFGSIPDSLGKCESLTRIRMGENFLNGSIPKELFGLPKLSQV 436

Query: 363 DLSLNHIVGEIPKELGKLN-SLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSV 421
           +L  N++ GE+P   G ++  L ++ L  NQL+G LP  IG+L  ++ L    NKF+ S+
Sbjct: 437 ELQDNYLTGELPISGGGVSGDLGQISLSNNQLSGSLPAAIGNLSGVQKLLLDGNKFSGSI 496

Query: 422 PESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEK 481
           P  +G L +L  L  S+N F   +  E+ +   L+ +D S N   G+IP ++  +K L  
Sbjct: 497 PPEIGRLQQLSKLDFSHNLFSGRIAPEISRCKLLTFVDLSRNELSGDIPNELTGMKILNY 556

Query: 482 LNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGV 541
           LNLS N+L G IP     M  L+ +D S N L G VP++  F      +  GN  LCG  
Sbjct: 557 LNLSRNHLVGSIPVTIASMQSLTSVDFSYNNLSGLVPSTGQFSYFNYTSFVGNSHLCGPY 616

Query: 542 KGMQPCKVFSSHKQNSGGKWFAVVFPVLGALFVSMALIAIFILRKQKSDSGDRQSSNQNP 601
            G  PC   +             +  VLG LF SM    + I++ +      R +S    
Sbjct: 617 LG--PCGKGTHQSHVKPLSATTKLLLVLGLLFCSMVFAIVAIIKARSL----RNASEAKA 670

Query: 602 QGL--FSILNFEGKLVYDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSS 659
             L  F  L+F    V D + +E N       IG GG G VY+  +P G++VAVK+  + 
Sbjct: 671 WRLTAFQRLDFTCDDVLDSL-KEDN------IIGKGGAGIVYKGTMPKGDLVAVKRLATM 723

Query: 660 IPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
                 +    F  E+Q L  IRHR+IV+  GFCS+ + + LVYE++  GSL  +L
Sbjct: 724 --SHGSSHDHGFNAEIQTLGRIRHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVL 777

Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	716
359491512	1078	PREDICTED: probable LRR receptor-like se	0.988	0.656	0.490	0.0
359491509	1032	PREDICTED: probable LRR receptor-like se	0.994	0.689	0.473	0.0
147767326	1032	hypothetical protein VITISV_008862 [Viti	0.994	0.689	0.476	0.0
147772402	996	hypothetical protein VITISV_022117 [Viti	0.991	0.712	0.481	0.0
255545702	1008	receptor protein kinase, putative [Ricin	0.995	0.707	0.465	0.0
225456159	1038	PREDICTED: probable LRR receptor-like se	0.895	0.617	0.529	1e-180
225456161	1037	PREDICTED: probable LRR receptor-like se	0.895	0.618	0.525	1e-179
297846642	1007	hypothetical protein ARALYDRAFT_891227 [	0.984	0.700	0.432	1e-171
255563971	1003	receptor protein kinase, putative [Ricin	0.973	0.694	0.439	1e-166
186511602	1045	Leucine-rich repeat-containing protein [	0.924	0.633	0.453	1e-165

>gi|359491512|ref|XP_002278614.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  694 bits (1792), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/816 (49%), Positives = 506/816 (62%), Gaps = 108/816 (13%)

Query: 1   SNEEADALLKWKASLQSHNQSLLPSWT---------NASTNVSSKISPCAWYGISCNDAG 51
           SNEE  ALLKWK++L +HN S L SWT         N+ST+  +   PC WYGISCN AG
Sbjct: 57  SNEETQALLKWKSTLHNHNHSFLLSWTLYPDPNNSTNSSTHHGTATGPCKWYGISCNHAG 116

Query: 52  RVTNISLRNTGLSGTLRDFSFSSFPQLVH------------------------LDLSLNG 87
            V  I+L  +GL GTL+ FSFSSFP L +                        LDLS N 
Sbjct: 117 SVIRINLTESGLRGTLQAFSFSSFPNLAYVDVCINNLSGPIPPQIGLLSKLKYLDLSTNQ 176

Query: 88  FFGTIPSQIG---NLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEV 144
           F G IP +IG   NL  L  ++L +NQL G IPA +G L++L  L    N+L GSIPPE+
Sbjct: 177 FSGGIPPEIGLLTNLEVLHLLALYTNQLEGSIPASLGNLSNLASLYLYENQLSGSIPPEM 236

Query: 145 CQLSSIEE------------------------LFLYSNHLNGSLPPFLGNLSNI--VRLY 178
             L+++ E                        L+L++N L+G +PP +GNL+++  + LY
Sbjct: 237 GNLANLVEIYSDTNNLTGLIPSTFGNLKRLTTLYLFNNQLSGHIPPEIGNLTSLQGISLY 296

Query: 179 INN----------------------NSLSGSILTNIGNLKFLFELDLS------FLPLSV 210
            NN                      N LSG I   IGNLK L +L+LS       +P S+
Sbjct: 297 ANNLSGPIPASLGDLSGLTLLHLYANQLSGPIPPEIGNLKSLVDLELSENQLNGSIPTSL 356

Query: 211 GNLTNLKSLGLMDNHLSGSIPPSFGN-SMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVS 269
           GNLTNL+ L L DNHLSG  P   G    L  L +  N  +G LP  IC+GG L  F VS
Sbjct: 357 GNLTNLEILFLRDNHLSGYFPKEIGKLHKLVVLEIDTNRLSGSLPEGICQGGSLVRFTVS 416

Query: 270 ENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNW 329
           +N   G IP+S++NC +L R    GN LTGNISE +G  PNL +IDLS N F+GE+S NW
Sbjct: 417 DNLLSGPIPKSMKNCRNLTRALFGGNQLTGNISEVVGDCPNLEYIDLSYNRFHGELSHNW 476

Query: 330 GKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILR 389
           G+CP+L  L ++ N+ITG IP + G  + L  LDLS NH+VGEIPK++G L SL +L L 
Sbjct: 477 GRCPQLQRLEMAGNDITGSIPEDFGISTNLTLLDLSSNHLVGEIPKKMGSLTSLLELKLN 536

Query: 390 GNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKEL 449
            NQL+G +P E+GSL  L +LD SAN+ N S+ E+LG  L LHYL LSNN+    +P ++
Sbjct: 537 DNQLSGSIPPELGSLFSLAHLDLSANRLNGSITENLGACLNLHYLNLSNNKLSNRIPAQM 596

Query: 450 EKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDIS 509
            KL  LS+LD SHNL  GEIP QI  L+SLE LNLSHNNLSG IP  FE M GLS IDIS
Sbjct: 597 GKLSHLSQLDLSHNLLSGEIPPQIEGLESLENLNLSHNNLSGFIPKAFEEMRGLSDIDIS 656

Query: 510 DNQLQGPVPNSTAFRNAPVEALEGNKELCGGVKGMQPCKVFSSHKQNSGGK----WFAVV 565
            NQLQGP+PNS AFR+A +E L+GNK+LCG VKG+QPCK  S   Q    K     F +V
Sbjct: 657 YNQLQGPIPNSKAFRDATIELLKGNKDLCGNVKGLQPCKNDSGAGQQPVKKGHKIVFIIV 716

Query: 566 FPVLGALFVSMALIAIFIL-----RKQKSDSGDRQSSNQNPQGLFSILNFEGKLVYDEIV 620
           FP+LGAL +  A I IF++     R  + + GD Q+       LFSI  F+G+ +Y+EI+
Sbjct: 717 FPLLGALVLLFAFIGIFLIAERTKRTPEIEEGDVQND------LFSISTFDGRAMYEEII 770

Query: 621 RETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTE 680
           + T DFD  YCIG GGHGSVY+AEL SG +VAVKK ++S     +A+Q++F  EV+ALTE
Sbjct: 771 KATKDFDPMYCIGKGGHGSVYKAELSSGNIVAVKKLYAS--DIDMANQRDFFNEVRALTE 828

Query: 681 IRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAILS 716
           I+HRNIVK  GFCSH +HSFLVYE+LERGSLAA+LS
Sbjct: 829 IKHRNIVKLLGFCSHPRHSFLVYEYLERGSLAAMLS 864

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491509|ref|XP_002278522.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  665 bits (1716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/824 (47%), Positives = 499/824 (60%), Gaps = 112/824 (13%)

Query: 1   SNEEADALLKWKASLQSHNQSLLPSWTNASTNVSSK-----ISPCAWYGISCNDAGRVTN 55
           SNEE  ALLKWKA+L + N  L     N  TN S++      +PC W+GISC  AG V  
Sbjct: 31  SNEETQALLKWKATLLNQNLLLWSLHPNNITNSSAQPGTATRTPCKWFGISCK-AGSVIR 89

Query: 56  ISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGK 115
           I+L + GL GTL+DFSFSSFP L + D+++N   G IP QIG L+KL Y+ L +NQ SG+
Sbjct: 90  INLTDLGLIGTLQDFSFSSFPNLAYFDINMNKLSGPIPPQIGFLSKLKYLDLSTNQFSGR 149

Query: 116 IPA------------------------EVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIE 151
           IP+                        E+G L  L  LS   N+L+G+IP  +  LS++ 
Sbjct: 150 IPSEIGLLTNLEVLHLVENQLNGSIPHEIGQLKSLCDLSLYTNKLEGTIPASLGNLSNLT 209

Query: 152 ELFLYSNHLNGSLPPFLGNLSNIVRLYIN------------------------NNSLSGS 187
            L+L  N L+G +PP +GNL+ +V L +N                        NN LSG 
Sbjct: 210 NLYLDENKLSGLIPPEMGNLTKLVELCLNANNLTGPIPSTLGNLKSLTLLRLYNNQLSGP 269

Query: 188 ILTNIGNLKFLFELDLSF------LPLSVGNLTNLKSLGLMDNHLSGSIPPSFGN----- 236
           I T IGNLK L  L LS       +P+S+G+L+ LKSL L DN LSG IP   GN     
Sbjct: 270 IPTEIGNLKHLRNLSLSSNYLSGPIPMSLGDLSGLKSLQLFDNQLSGPIPQEMGNLRSLV 329

Query: 237 --------------------------------------------SMLTWLTLSGNHFTGY 252
                                                         L  L +  N  +G+
Sbjct: 330 DLEISQNQLNGSIPTLLGNLINLEILYLRDNKLSSSIPPEIGKLHKLVELEIDTNQLSGF 389

Query: 253 LPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLT 312
           LP  IC+GG LE F V +N   G IPESL+NC SL R RL GN LTGNISEA G+ PNL 
Sbjct: 390 LPEGICQGGSLENFTVFDNFLIGPIPESLKNCPSLARARLQGNQLTGNISEAFGVCPNLY 449

Query: 313 FIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGE 372
            I+LS N FYGE+S NWG+C KL  L+++ NNITG IP + G  +QL  L+LS NH+VGE
Sbjct: 450 HINLSNNKFYGELSQNWGRCHKLQWLDIAGNNITGSIPADFGISTQLTVLNLSSNHLVGE 509

Query: 373 IPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLH 432
           IPK+LG ++SL KLIL  N+L+G +P E+GSL +L YLD S N+ N S+PE LGN L L+
Sbjct: 510 IPKKLGSVSSLWKLILNDNRLSGNIPPELGSLADLGYLDLSGNRLNGSIPEHLGNCLDLN 569

Query: 433 YLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGL 492
           YL LSNN+    +P ++ KL  LS LD SHNL  GEIP QI  L+SLEKLNLSHNNLSG+
Sbjct: 570 YLNLSNNKLSHGIPVQMGKLSHLSLLDLSHNLLTGEIPSQIQGLQSLEKLNLSHNNLSGI 629

Query: 493 IPNCFEGMHGLSIIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGVKGMQPCKVFSS 552
           IP  FE MHGL  +DIS N LQG +PNS AF+N  +E L+GNK LCG VKG+QPC+  S+
Sbjct: 630 IPKAFEDMHGLWQVDISYNDLQGSIPNSEAFQNVTIEVLQGNKGLCGSVKGLQPCENRSA 689

Query: 553 HKQNSGGKWFAVVFPVLGALFVSMALIAIFILRKQKSDSGDRQSSNQNPQGLFSILNFEG 612
            K  +    F ++F +LGAL +  A I I ++ + + ++   ++ +   + LFSI  F+G
Sbjct: 690 TK-GTHKAVFIIIFSLLGALLILSAFIGISLISQGRRNAKMEKAGDVQTENLFSISTFDG 748

Query: 613 KLVYDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFL 672
           +  Y+ I+  T DFD  YCIG GGHGSVY+AELPSG +VAVKK H     D +A QK+F+
Sbjct: 749 RTTYEAIIEATKDFDPMYCIGEGGHGSVYKAELPSGNIVAVKKLH-RFDID-MAHQKDFV 806

Query: 673 TEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAILS 716
            E++ALTEI+HRNIVK  GFCSH++HSFLVYE+LERGSL  ILS
Sbjct: 807 NEIRALTEIKHRNIVKLLGFCSHSRHSFLVYEYLERGSLGTILS 850

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147767326|emb|CAN68996.1| hypothetical protein VITISV_008862 [Vitis vinifera]

 Score =  660 bits (1703), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/824 (47%), Positives = 496/824 (60%), Gaps = 112/824 (13%)

Query: 1   SNEEADALLKWKASLQSHNQSLLPSWTNASTNVSSK-----ISPCAWYGISCNDAGRVTN 55
           SNEE  ALLKWKA+L + N  L     N  TN S++      +PC W+GISC  AG V  
Sbjct: 31  SNEETQALLKWKATLLNQNLLLWSLHPNNITNSSAQPGTATRTPCKWFGISCK-AGSVIR 89

Query: 56  ISLRNTGLSGTLRDFSFSSFPQLVH------------------------LDLSLNGFFGT 91
           I+L + GL GTL+DFSFSSFP L +                        LDLS N F G 
Sbjct: 90  INLTDLGLIGTLQDFSFSSFPNLAYFDINMNKLSGPIPPQIGFLSKLKYLDLSTNQFSGR 149

Query: 92  IPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIE 151
           IPS+IG LT L  + L  NQL+G IP E+G L  L  LS   N+L+GSIP  +  LS++ 
Sbjct: 150 IPSEIGLLTNLEVLHLVENQLNGSIPHEIGQLKSLCDLSLYTNKLEGSIPASLGNLSNLT 209

Query: 152 ELFLYSNHLNGSLPPFLGNLSNIVRLYIN------------------------NNSLSGS 187
            L+L  N L+G +PP +GNL+ +V L +N                        NN LSG 
Sbjct: 210 NLYLDENKLSGLIPPEMGNLTKLVELCLNANNLTGPIPSTLGNLKSLTLLRLYNNQLSGP 269

Query: 188 ILTNIGNLKFLFELDLSF------LPLSVGNLTNLKSLGLMDNHLSGSIPPSFGN----- 236
           I T IGNLK L  L LS       +P+S+G+L+ LKSL L DN LSG IP   GN     
Sbjct: 270 IPTEIGNLKHLRNLSLSSNYLSGPIPMSLGDLSGLKSLQLFDNQLSGPIPQEMGNLRSLV 329

Query: 237 --------------------------------------------SMLTWLTLSGNHFTGY 252
                                                         L  L +  N  +G+
Sbjct: 330 DLEISQNQLNGSIPTSLGNLINLEILYLRDNKLSSSIPPEIGKLHKLVELEIDTNQLSGF 389

Query: 253 LPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLT 312
           LP  IC+GG LE F V +N   G IPESL+NC SL R RL  N LTGNISEA G+ PNL 
Sbjct: 390 LPEGICQGGSLENFTVFDNFLIGPIPESLKNCPSLARARLQRNQLTGNISEAFGVCPNLY 449

Query: 313 FIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGE 372
            I+LS N FYGE+S NWG+C KL  L+++ NNITG IP + G  +QL  L+LS NH+VGE
Sbjct: 450 HINLSNNKFYGELSQNWGRCHKLQWLDIAGNNITGSIPADFGISTQLTVLNLSSNHLVGE 509

Query: 373 IPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLH 432
           IPK+LG ++SL KLIL  N+L+G +P E+GSL +L YLD S N+ N S+PE LGN L L+
Sbjct: 510 IPKKLGSVSSLWKLILNDNRLSGNIPPELGSLADLGYLDLSGNRLNGSIPEHLGNCLDLN 569

Query: 433 YLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGL 492
           YL LSNN+    +P ++ KL  LS LD SHNL  GEIP QI  L+SLEKLNLSHNNLSG+
Sbjct: 570 YLNLSNNKLSHGIPVQMGKLSHLSLLDLSHNLLTGEIPSQIQGLQSLEKLNLSHNNLSGI 629

Query: 493 IPNCFEGMHGLSIIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGVKGMQPCKVFSS 552
           IP  FE MHGL  +DIS N LQG +PNS AF+N  +E L+GNK LCG VKG+QPC+  S+
Sbjct: 630 IPKAFEDMHGLWQVDISYNDLQGSIPNSEAFQNVTIEVLQGNKGLCGSVKGLQPCENRSA 689

Query: 553 HKQNSGGKWFAVVFPVLGALFVSMALIAIFILRKQKSDSGDRQSSNQNPQGLFSILNFEG 612
            K  +    F ++F +LGAL +  A I I ++ + + ++   ++ +   + LFSI  F+G
Sbjct: 690 TK-GTHKAVFIIIFSLLGALLILSAFIGISLISQGRRNAKMEKAGDVQTENLFSISTFDG 748

Query: 613 KLVYDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFL 672
           +  Y+ I+  T DFD  YCIG GGHGSVY+AELPSG +VAVKK H     D +A QK+F+
Sbjct: 749 RTTYEAIIEATKDFDPMYCIGEGGHGSVYKAELPSGNIVAVKKLH-RFDID-MAHQKDFM 806

Query: 673 TEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAILS 716
            E++ALTEI+HRNIVK  GFCSH++HSFLVYE+LERGSL  ILS
Sbjct: 807 NEIRALTEIKHRNIVKLLGFCSHSRHSFLVYEYLERGSLGTILS 850

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147772402|emb|CAN73988.1| hypothetical protein VITISV_022117 [Vitis vinifera]

 Score =  656 bits (1692), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/791 (48%), Positives = 492/791 (62%), Gaps = 81/791 (10%)

Query: 1   SNEEADALLKWKASLQSHNQSLLPSW-------TNASTNVSSKISPCA------------ 41
           SNEE  ALLKWKASLQ+H+ S L SW       TN+ST++ +  SPC             
Sbjct: 31  SNEETQALLKWKASLQNHDHSSLLSWDLYPNNSTNSSTHLGTATSPCKCMNNLSGPIPPQ 90

Query: 42  --------WYGISCN--------DAGRVTNIS---LRNTGLSGTLRDFSFSSFPQLVHLD 82
                   +  +S N        + G +TN+    L    L+G++          L  L 
Sbjct: 91  IGLLSELKYLDLSINQFSGGIPSEIGLLTNLEVLHLVQNQLNGSI-PHEIGQLASLYELA 149

Query: 83  LSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLT------------------ 124
           L  N   G+IP+ +GNL+ L+Y+ L  NQLS  IP E+G LT                  
Sbjct: 150 LYTNQLEGSIPASLGNLSNLAYLYLYENQLSDSIPPEMGNLTNLVEIYSDTNNLIGPIPS 209

Query: 125 ------HLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLY 178
                  L VL    N L G IPPE+  L S++ L LY N+L+G +P  LG+LS +  L+
Sbjct: 210 TFGNLKRLTVLYLFNNRLSGHIPPEIGNLKSLQGLSLYENNLSGPIPASLGDLSGLTLLH 269

Query: 179 INNNSLSGSILTNIGNLKFLFELDLS------FLPLSVGNLTNLKSLGLMDNHLSGSIPP 232
           +  N LSG I   IGNLK L +L+LS       +P S+GNLTNL++L L DN LSG IP 
Sbjct: 270 LYANQLSGPIPQEIGNLKSLVDLELSENQLNGSIPTSLGNLTNLETLFLRDNQLSGYIPQ 329

Query: 233 SFGN-SMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVR 291
             G    L  L +  N   G LP  IC+GG LE F VS+NH  G IP+SL+NC +L R  
Sbjct: 330 EIGKLHKLVVLEIDTNQLFGSLPEGICQGGSLERFTVSDNHLSGPIPKSLKNCKNLTRAL 389

Query: 292 LNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPR 351
             GN LTGNISE +G  PNL +I++S N+F+GE+S NWG+ P+L  L ++ NNITG IP 
Sbjct: 390 FGGNQLTGNISEVVGDCPNLEYINVSYNSFHGELSHNWGRYPRLQRLEMAWNNITGSIPE 449

Query: 352 EIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLD 411
           + G  + L  LDLS NH+ GEIPK++G + SL KLIL  NQL+G +P E+GSL +L YLD
Sbjct: 450 DFGISTDLTLLDLSSNHLFGEIPKKMGSVTSLWKLILNDNQLSGNIPPELGSLADLGYLD 509

Query: 412 FSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPF 471
            SAN+ N S+PE LG+ L L+YL LSNN+    +P ++ KL  LS+LD SHNL  G+IP 
Sbjct: 510 LSANRLNGSIPEHLGDCLGLNYLNLSNNKLSHGIPVQMGKLGHLSQLDLSHNLLTGDIPP 569

Query: 472 QICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNSTAFRNAPVEAL 531
           QI  L+SLE LNLSHNNLSG IP  FE M GLS +DIS NQLQGP+PNS AFR+A +EAL
Sbjct: 570 QIEGLQSLENLNLSHNNLSGFIPKAFEEMLGLSDVDISYNQLQGPIPNSKAFRDATIEAL 629

Query: 532 EGNKELCGGVKGMQPCKVFSSHKQNSGGK----WFAVVFPVLGALFVSMALIAIFILRKQ 587
           +GNK LCG VK ++PCK  S   Q    K     F ++FP+LGAL +  A I IF++  +
Sbjct: 630 KGNKGLCGNVKRLRPCKYGSGVDQQPVKKSHKVVFIIIFPLLGALVLLFAFIGIFLIAAR 689

Query: 588 KSDSGD-RQSSNQNPQGLFSILNFEGKLVYDEIVRETNDFDAEYCIGNGGHGSVYRAELP 646
           +  + + ++   QN   LFSI  F+G+ +Y+EI++ T DFD  YCIG GGHGSVY+AELP
Sbjct: 690 RERTPEIKEGEVQN--DLFSISTFDGRTMYEEIIKATKDFDPMYCIGKGGHGSVYKAELP 747

Query: 647 SGEVVAVKKFHSSIPCD-QIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEF 705
           S  +VAVKK H   P D ++A+QK+FL E++ALTEI+HRNIVK  GFCSH +H FLVYE+
Sbjct: 748 SSNIVAVKKLH---PSDTEMANQKDFLNEIRALTEIKHRNIVKLLGFCSHPRHKFLVYEY 804

Query: 706 LERGSLAAILS 716
           LERGSLA ILS
Sbjct: 805 LERGSLATILS 815

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545702|ref|XP_002513911.1| receptor protein kinase, putative [Ricinus communis] gi|223546997|gb|EEF48494.1| receptor protein kinase, putative [Ricinus communis]

 Score =  647 bits (1669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/802 (46%), Positives = 495/802 (61%), Gaps = 89/802 (11%)

Query: 1   SNEEADALLKWKASLQSH---NQSLLPSWTNASTNVSSKISPCAWYGISCNDAGRVTNIS 57
           S E+A++LLKW A+L +    N+S  P     STN ++K SPC W G+SCN  G V  I+
Sbjct: 30  SAEQANSLLKWAATLHNQKYSNRSPWPLLPENSTNPNAKTSPCTWLGLSCNRGGSVVRIN 89

Query: 58  LRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIP 117
           L  +GL+GTL + SFS+FP L  LDLS N    TIP +I  L KL ++ L SNQLSG IP
Sbjct: 90  LTTSGLNGTLHELSFSAFPDLEFLDLSCNSLSSTIPLEITQLPKLIFLDLSSNQLSGVIP 149

Query: 118 AEVGL------------------------LTHLKVLSFQFNELDGSIPPEVCQLSSIEEL 153
            ++GL                        LT L  L    N   GSIP E+  L ++ EL
Sbjct: 150 PDIGLLTNLNTLRLSANRLDGSIPSSVGNLTELAWLHLYDNRFSGSIPSEMGNLKNLVEL 209

Query: 154 FLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDL---------- 203
           F+ +N L GS+P   G+L+ +V+L++ NN LSG I   +G+LK L  L L          
Sbjct: 210 FMDTNLLTGSIPSTFGSLTKLVQLFLYNNQLSGHIPQELGDLKSLTSLSLFGNNLSGPIP 269

Query: 204 --------------------SFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGN-SMLTWL 242
                                 +P  +GNL +L +L L +N L+GSIP S GN S L  L
Sbjct: 270 ASLGGLTSLTILHLYQNQLSGTIPKELGNLNSLSNLELSENKLTGSIPASLGNLSRLELL 329

Query: 243 -----TLSG-------------------NHFTGYLPHNICRGGLLEAFIVSENHFQGTIP 278
                 LSG                   N  TGYLP NIC+  +L+ F V++N  +G IP
Sbjct: 330 FLKNNQLSGPIPEQIANLSKLSLLQLQSNQLTGYLPQNICQSKVLQNFSVNDNRLEGPIP 389

Query: 279 ESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTL 338
           +S+R+C SL+R+ L GN   GNISE  G+YP L F+D+  N F+GEISS WG CP LGTL
Sbjct: 390 KSMRDCKSLVRLHLEGNQFIGNISEDFGVYPYLQFVDIRYNKFHGEISSKWGMCPHLGTL 449

Query: 339 NVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLP 398
            +S NNI+G IP EIGN ++LQ LD S N +VG IPKELGKL SL ++ L  NQL+  +P
Sbjct: 450 LISGNNISGIIPPEIGNAARLQGLDFSSNQLVGRIPKELGKLTSLVRVNLEDNQLSDGVP 509

Query: 399 TEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSEL 458
           +E GSL +LE LD SAN+FN S+P ++GNL+KL+YL LSNNQF  E+P +L KLV LS+L
Sbjct: 510 SEFGSLTDLESLDLSANRFNQSIPGNIGNLVKLNYLNLSNNQFSQEIPIQLGKLVHLSKL 569

Query: 459 DASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVP 518
           D S N   GEIP ++  ++SLE LNLS NNLSG IP   + MHGLS IDIS N+L+GPVP
Sbjct: 570 DLSQNFLIGEIPSELSGMQSLEVLNLSRNNLSGFIPGDLKEMHGLSSIDISYNKLEGPVP 629

Query: 519 NSTAFRNAPVEALEGNKELCGGVKGMQPCKVFSSHKQNSGGKWFAVVF-----PVLGALF 573
           ++ AF+N+ +EA +GNK LCG V+G+QPCK  SS +Q S  K+   +F     P+ GA  
Sbjct: 630 DNKAFQNSSIEAFQGNKGLCGHVQGLQPCKP-SSTEQGSSIKFHKRLFLVISLPLFGAFL 688

Query: 574 VSMALIAIFILRKQKSDSGDRQSSNQNPQGLFSILNFEGKLVYDEIVRETNDFDAEYCIG 633
           +   L  +F   K+  ++ + + S+Q  + +  I +F+GK ++DEI+  T+ F+  YCIG
Sbjct: 689 ILSFLGVLFFQSKRSKEALEAEKSSQESEEILLITSFDGKSMHDEIIEATDSFNDIYCIG 748

Query: 634 NGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFC 693
            GG GSVY+A+L SG  VAVKK H S    +   QKEF +E++ALTEI+HRNIVKFYGFC
Sbjct: 749 KGGCGSVYKAKLSSGSTVAVKKLHQSHDAWK-PYQKEFWSEIRALTEIKHRNIVKFYGFC 807

Query: 694 SHAQHSFLVYEFLERGSLAAIL 715
           S++ +SFLVYE +E+GSLA IL
Sbjct: 808 SYSAYSFLVYECIEKGSLATIL 829

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456159|ref|XP_002278561.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  637 bits (1642), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 349/659 (52%), Positives = 441/659 (66%), Gaps = 18/659 (2%)

Query: 71  SFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLS 130
           S  +   L  L L  N   G+IP ++GNLT L  I  ++N L+G IP+  G L  L VL 
Sbjct: 204 SLGNLSNLASLYLYENQLSGSIPPEMGNLTNLVEIYSNNNNLTGPIPSTFGNLKRLTVLY 263

Query: 131 FQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILT 190
              N L G IPPE+  L S++EL LY N+L+G +P  L +LS +  L++  N LSG I  
Sbjct: 264 LFNNSLSGPIPPEIGNLKSLQELSLYENNLSGPIPVSLCDLSGLTLLHLYANQLSGPIPQ 323

Query: 191 NIGNLKFLFELDLS------FLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGN-SMLTWLT 243
            IGNLK L +L+LS       +P S+GNLTNL+ L L DN LSG IP   G    L  L 
Sbjct: 324 EIGNLKSLVDLELSENQLNGSIPTSLGNLTNLEILFLRDNQLSGYIPQEIGKLHKLVVLE 383

Query: 244 LSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISE 303
           +  N   G LP  IC+ G L  F VS+NH  G IP+SL+NC +L R    GN LTGNISE
Sbjct: 384 IDTNQLFGSLPEGICQAGSLVRFAVSDNHLSGPIPKSLKNCRNLTRALFQGNRLTGNISE 443

Query: 304 ALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALD 363
            +G  PNL FIDLS N F+GE+S NWG+CP+L  L ++ NNITG IP + G  + L  LD
Sbjct: 444 VVGDCPNLEFIDLSYNRFHGELSHNWGRCPQLQRLEIAGNNITGSIPEDFGISTNLTLLD 503

Query: 364 LSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPE 423
           LS NH+VGEIPK++G L SL  LIL  NQL+G +P E+GSL  LEYLD SAN+ N S+PE
Sbjct: 504 LSSNHLVGEIPKKMGSLTSLLGLILNDNQLSGSIPPELGSLSHLEYLDLSANRLNGSIPE 563

Query: 424 SLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLN 483
            LG+ L LHYL LSNN+    +P ++ KL  LS+LD SHNL  G IP QI  L+SLE L+
Sbjct: 564 HLGDCLDLHYLNLSNNKLSHGIPVQMGKLSHLSQLDLSHNLLAGGIPPQIQGLQSLEMLD 623

Query: 484 LSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGVKG 543
           LSHNNL G IP  FE M  LS +DIS NQLQGP+P+S AFRNA +E L+GNK+LCG VKG
Sbjct: 624 LSHNNLCGFIPKAFEDMPALSYVDISYNQLQGPIPHSNAFRNATIEVLKGNKDLCGNVKG 683

Query: 544 MQPCKV-FSSHKQ---NSGGKWFAVVFPVLGALFVSMALIAIFILRKQKSDSGDRQSSN- 598
           +QPCK  F   +Q    S    F ++FP+LGAL +  A I IF++ +++  + + +  + 
Sbjct: 684 LQPCKYGFGVDQQPVKKSHKVVFIIIFPLLGALVLLFAFIGIFLIAERRERTPEIEEGDV 743

Query: 599 QNPQGLFSILNFEGKLVYDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHS 658
           QN   LFSI NF+G+ +Y+EI++ T DFD  YCIG GGHGSVY+AELPS  +VAVKK H 
Sbjct: 744 QN--DLFSISNFDGRTMYEEIIKATKDFDPMYCIGKGGHGSVYKAELPSSNIVAVKKLH- 800

Query: 659 SIPCD-QIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAILS 716
             P D ++A+QK+FL E++ALTEI+HRNIVK  GFCSH +H FLVYE+LERGSLA ILS
Sbjct: 801 --PSDTEMANQKDFLNEIRALTEIKHRNIVKLLGFCSHPRHKFLVYEYLERGSLATILS 857

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456161|ref|XP_002278590.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  634 bits (1634), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 346/659 (52%), Positives = 441/659 (66%), Gaps = 18/659 (2%)

Query: 71  SFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLS 130
           S  +   L  L L  N   G+IP ++GNLT L  +  D+N L+G IP+  G L HL VL 
Sbjct: 204 SLGNLSNLASLYLYENQLSGSIPPEMGNLTNLVQLYSDTNNLTGPIPSTFGNLKHLTVLY 263

Query: 131 FQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILT 190
              N L G IPPE+  L S++ L LY N+L+G +P  L +LS +  L++  N LSG I  
Sbjct: 264 LFNNSLSGPIPPEIGNLKSLQGLSLYGNNLSGPIPVSLCDLSGLTLLHLYANQLSGPIPQ 323

Query: 191 NIGNLKFLFELDLS------FLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGN-SMLTWLT 243
            IGNLK L +L+LS       +P S+GNLTNL+ L L DN LSG  P   G    L  L 
Sbjct: 324 EIGNLKSLVDLELSENQLNGSIPTSLGNLTNLEILFLRDNRLSGYFPQEIGKLHKLVVLE 383

Query: 244 LSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISE 303
           +  N   G LP  IC+GG LE F VS+NH  G IP+SL+NC +L R    GN LTGN+SE
Sbjct: 384 IDTNQLFGSLPEGICQGGSLERFTVSDNHLSGPIPKSLKNCRNLTRALFQGNRLTGNVSE 443

Query: 304 ALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALD 363
            +G  PNL FIDLS N F+GE+S NWG+CP+L  L ++ NNITG IP + G  + L  LD
Sbjct: 444 VVGDCPNLEFIDLSYNRFHGELSHNWGRCPQLQRLEIAGNNITGSIPEDFGISTNLILLD 503

Query: 364 LSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPE 423
           LS NH+VGEIPK++G L SL  LIL  NQL+G +P E+GSL  LEYLD SAN+ N S+PE
Sbjct: 504 LSSNHLVGEIPKKMGSLTSLLGLILNDNQLSGSIPPELGSLSHLEYLDLSANRLNGSIPE 563

Query: 424 SLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLN 483
            LG+ L LHYL LSNN+    +P ++ KL  LS+LD SHNL  G IP QI  L+SLE L+
Sbjct: 564 HLGDCLDLHYLNLSNNKLSHGIPVQMGKLSHLSQLDLSHNLLTGGIPAQIQGLESLEMLD 623

Query: 484 LSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGVKG 543
           LSHNNL G IP  FE M  LS +DIS NQLQGP+P+S AFRNA +E L+GNK+LCG VKG
Sbjct: 624 LSHNNLCGFIPKAFEDMPALSYVDISYNQLQGPIPHSNAFRNATIEVLKGNKDLCGNVKG 683

Query: 544 MQPCKV-FSSHKQ---NSGGKWFAVVFPVLGALFVSMALIAIFILRKQKSDSGDRQSSN- 598
           +QPCK  F   +Q    S    F ++FP+LGAL +  A I IF++ +++  + + +  + 
Sbjct: 684 LQPCKYGFGVDQQPVKKSHKVVFIIIFPLLGALVLLSAFIGIFLIAERRERTPEIEEGDV 743

Query: 599 QNPQGLFSILNFEGKLVYDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHS 658
           QN   L SI  F+G+ +Y+EI++ T DFD  YCIG GGHGSVY+AELPSG +VAVKK H 
Sbjct: 744 QN--NLLSISTFDGRAMYEEIIKATKDFDPMYCIGKGGHGSVYKAELPSGNIVAVKKLH- 800

Query: 659 SIPCD-QIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAILS 716
             P D  +A+QK+FL +V+A+TEI+HRNIV+  GFCS+ +HSFLVYE+LERGSLA ILS
Sbjct: 801 --PSDMDMANQKDFLNKVRAMTEIKHRNIVRLLGFCSYPRHSFLVYEYLERGSLATILS 857

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297846642|ref|XP_002891202.1| hypothetical protein ARALYDRAFT_891227 [Arabidopsis lyrata subsp. lyrata] gi|297337044|gb|EFH67461.1| hypothetical protein ARALYDRAFT_891227 [Arabidopsis lyrata subsp. lyrata]

 Score =  607 bits (1565), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 348/805 (43%), Positives = 494/805 (61%), Gaps = 100/805 (12%)

Query: 4   EADALLKWKASLQSHNQS-LLPSWTNASTNVSSKISPCAWYGISCNDAGRVTNISLRNTG 62
           EA+ALLKWK++  +  +S  L SW N   N ++  S  +WYG+SCN  G +  ++L    
Sbjct: 33  EANALLKWKSTFTNQKRSSKLSSWVN-DANTNTSFSCTSWYGVSCNSRGSIKKLNLTGNA 91

Query: 63  LSGTLRDFSFSSFP------------------------QLVHLDLSLNGFFGTIPSQIGN 98
           + GT +DF FSS P                        +L++ DLS N     IP ++GN
Sbjct: 92  IEGTFQDFPFSSLPNLAYIDFSMNRFSGTIPPQFGNLFKLIYFDLSTNHLTREIPPELGN 151

Query: 99  LTKLSYISLDSNQLSGKIPAEVGLLTHLKVL------------------------SFQFN 134
           L  L  +SL +N+L+G IP+ +G L +L VL                            N
Sbjct: 152 LQNLKGLSLSNNKLAGSIPSSIGKLKNLTVLYLYKNYLTGVIPPDLGNMEYMIDLELSHN 211

Query: 135 ELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGN 194
           +L GSIP  +  L ++  L+L+ N+L G +PP LGN+ +++ L ++ N L+GSI +++GN
Sbjct: 212 KLTGSIPSSLGNLKNLTVLYLHHNYLTGVIPPELGNMESMISLALSENKLTGSIPSSLGN 271

Query: 195 LKFL------------------------FELDLS------FLPLSVGNLTNLKSLGLMDN 224
           LK L                         +L+LS       +P S GN T LKSL L  N
Sbjct: 272 LKNLTVLYLHQNYITGVIPPELGNMESMIDLELSQNNLTGSIPSSFGNFTKLKSLYLSYN 331

Query: 225 HLSGSIPPSFGNSM-LTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRN 283
           HLSG+IPP   NS  LT L L+ N+F+G+LP NIC+GG L+   + +NH +G IP+SLR+
Sbjct: 332 HLSGAIPPGVANSSELTELQLAINNFSGFLPKNICKGGKLQFIALYDNHLKGPIPKSLRD 391

Query: 284 CTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMN 343
           C SLIR +  GN   GNISEA G+YP+L FIDLS N F GEISSNW K PKLG L +S N
Sbjct: 392 CKSLIRAKFVGNKFVGNISEAFGVYPDLNFIDLSHNKFNGEISSNWQKSPKLGALIMSNN 451

Query: 344 NITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGS 403
           NITG IP EI NM QL  LDLS N++ GE+P+ +G L +L++L L GNQL+GR+P  I  
Sbjct: 452 NITGAIPPEIWNMKQLGELDLSANNLSGELPEAIGNLTNLSRLRLNGNQLSGRVPAGISF 511

Query: 404 LIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHN 463
           L  LE LD S+N+F++ +P++  + LKLH + LS N F   +P  L KL QL+ LD SHN
Sbjct: 512 LTNLESLDLSSNRFSSQIPQTFDSFLKLHEMNLSRNNFDGRIPG-LTKLTQLTHLDLSHN 570

Query: 464 LFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNSTAF 523
              GEIP Q+ SL+SL+KLNLSHNNLSG IP  FE M  L+ IDIS+N+L+GP+P++ AF
Sbjct: 571 QLDGEIPSQLSSLQSLDKLNLSHNNLSGFIPTTFESMKALTFIDISNNKLEGPLPDNPAF 630

Query: 524 RNAPVEALEGNKELCGGV--KGMQPCKV----FSSHKQNSGGKWFAVVFPVLGALFVSMA 577
           +NA  +ALEGN+ LC  +  + ++ C +    F   K+N G     ++ P+LGAL + ++
Sbjct: 631 QNATSDALEGNRGLCSNIPKQRLKSCPITSGGFQKPKKN-GNLLVWILVPILGALVI-LS 688

Query: 578 LIA---IFILRKQKSDSGDRQSSNQNPQGLFSILNFEGKLVYDEIVRETNDFDAEYCIGN 634
           + A    + +RK+K  +G R + ++  + + SI + +GK  Y +I+  TN+FD  Y IG+
Sbjct: 689 ICAGAFTYYIRKRKPHNG-RNTDSETGENM-SIFSVDGKFKYQDIIESTNEFDQRYLIGS 746

Query: 635 GGHGSVYRAELPSGEVVAVKKFHSSIPCDQIAD---QKEFLTEVQALTEIRHRNIVKFYG 691
           GG+  VY+A LP   +VAVK+ H +I  ++I+    ++EFL EV+ALTEIRHRN+VK +G
Sbjct: 747 GGYSKVYKANLPDA-IVAVKRLHDTID-EEISKPVVKQEFLNEVRALTEIRHRNVVKLFG 804

Query: 692 FCSHAQHSFLVYEFLERGSLAAILS 716
           FCSH +H+FL+YE++E+GSL  +L+
Sbjct: 805 FCSHRRHTFLIYEYMEKGSLNKLLA 829

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563971|ref|XP_002522985.1| receptor protein kinase, putative [Ricinus communis] gi|223537797|gb|EEF39415.1| receptor protein kinase, putative [Ricinus communis]

 Score =  590 bits (1522), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 340/773 (43%), Positives = 465/773 (60%), Gaps = 76/773 (9%)

Query: 8   LLKWKASLQSHNQSLLPSWTNASTNVSSKISPC-AWYGISCNDAGRVTNISLRNTGLSGT 66
           LL WKA+L + +QS L SW + S        PC +W+GI CN+AG VTNISLR++GL+GT
Sbjct: 38  LLGWKATLDNQSQSFLSSWASGS--------PCNSWFGIHCNEAGSVTNISLRDSGLTGT 89

Query: 67  LRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLL--- 123
           L+  SFSSFP L+ L+ S N F+G+IP  + NL+KL+ + L  N++SG IP E+G+L   
Sbjct: 90  LQSLSFSSFPNLIRLNFSNNSFYGSIPPTVANLSKLNILDLSVNKISGSIPQEIGMLRSL 149

Query: 124 ---------------------THLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNG 162
                                T L +L     EL GSIP E+  + S  ++ L +N+L G
Sbjct: 150 TYIDLSNNFLNGSLPPSIGNLTQLPILYIHMCELSGSIPDEIGLMRSAIDIDLSTNYLTG 209

Query: 163 SLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSF------LPLSVGNLTNL 216
           ++P  +GNL+ +  L++N N LSGSI   IG LK L +L  S+      +P SVGNLT L
Sbjct: 210 TVPTSIGNLTKLEYLHLNQNQLSGSIPQEIGMLKSLIQLAFSYNNLSGPIPSSVGNLTAL 269

Query: 217 KSLGLMDNHLSGSIPPSFGNSMLTWLT--------LSG-------------------NHF 249
             L L +N  +GSIPP  G  ML  LT        LSG                   N F
Sbjct: 270 TGLYLSNNSFTGSIPPEIG--MLRKLTQLFLEYNELSGTLPSEMNNFTSLEVVIIYSNRF 327

Query: 250 TGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYP 309
           TG LP +IC GG L A  V+ N+F G IP SLRNC+SL+R RL  N LTGNISE  G+YP
Sbjct: 328 TGPLPQDICIGGRLSALSVNRNNFSGPIPRSLRNCSSLVRARLERNQLTGNISEDFGIYP 387

Query: 310 NLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHI 369
            L ++DLS N  +GE++  W     L TL +S NNI+G IP E+GN +QLQ+L  S NH+
Sbjct: 388 QLKYLDLSGNKLHGELTWKWEDFGNLSTLIMSENNISGIIPAELGNATQLQSLHFSSNHL 447

Query: 370 VGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLL 429
           +GEIPKELGKL  L +L L  N+L+G +P EIG L +L  LD + N  + ++P+ LG+  
Sbjct: 448 IGEIPKELGKLR-LLELSLDDNKLSGSIPEEIGMLSDLGSLDLAGNNLSGAIPKQLGDCS 506

Query: 430 KLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNL 489
           KL +L LSNN+F   +P E+  +  L  LD S+NL  GEIP Q+  L+ +E LNLS+N L
Sbjct: 507 KLMFLNLSNNKFSESIPLEVGNIDSLESLDLSYNLLTGEIPEQLGKLQRMETLNLSNNLL 566

Query: 490 SGLIPNCFEGMHGLSIIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGVKGMQPC-- 547
           SG IP  F+ + GL+ ++IS N L+GP+P   AF+ AP EAL  NK LCG    ++ C  
Sbjct: 567 SGSIPKSFDYLSGLTTVNISYNDLEGPIPPIKAFQEAPFEALRDNKNLCGNNSKLKACVS 626

Query: 548 -KVFSSHKQNSGGKWFAVVFPVLGALFVSMALIAIFILRKQKSDSGDRQSSNQNP---QG 603
             +    ++    ++  ++ PVL  LF+ + LI  F + +Q+  +    SS +     + 
Sbjct: 627 PAIIKPVRKKGETEYTLILIPVLCGLFLLVVLIGGFFIHRQRMRNTKANSSLEEEAHLED 686

Query: 604 LFSILNFEGKLVYDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCD 663
           ++++ + +  L Y+ IV  T +FD++YCIG GG+G VY+  LP+G VVAVKK H S    
Sbjct: 687 VYAVWSRDRDLHYENIVEATEEFDSKYCIGVGGYGIVYKVVLPTGRVVAVKKLHQS-QNG 745

Query: 664 QIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAILS 716
           +I D K F  E+  L  IRHRNIVK +GFCSH +HSFLVY+F+ERGSL   LS
Sbjct: 746 EITDMKAFRNEICVLMNIRHRNIVKLFGFCSHPRHSFLVYDFIERGSLRNTLS 798

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186511602|ref|NP_849538.2| Leucine-rich repeat-containing protein [Arabidopsis thaliana] gi|281185491|sp|Q8VZG8.3|Y4885_ARATH RecName: Full=Probable LRR receptor-like serine/threonine-protein kinase At4g08850; Flags: Precursor gi|18086327|gb|AAL57627.1| AT4g08850/T32A17_160 [Arabidopsis thaliana] gi|224589610|gb|ACN59338.1| leucine-rich repeat receptor-like protein kinase [Arabidopsis thaliana] gi|332657282|gb|AEE82682.1| Leucine-rich repeat-containing protein [Arabidopsis thaliana]

 Score =  590 bits (1520), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 307/677 (45%), Positives = 453/677 (66%), Gaps = 15/677 (2%)

Query: 52  RVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQ 111
           +VT I++ +  L+G +   SF +  +LV+L L +N   G+IPS+IGNL  L  + LD N 
Sbjct: 191 KVTEIAIYDNLLTGPIPS-SFGNLTKLVNLYLFINSLSGSIPSEIGNLPNLRELCLDRNN 249

Query: 112 LSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNL 171
           L+GKIP+  G L ++ +L+   N+L G IPPE+  +++++ L L++N L G +P  LGN+
Sbjct: 250 LTGKIPSSFGNLKNVTLLNMFENQLSGEIPPEIGNMTALDTLSLHTNKLTGPIPSTLGNI 309

Query: 172 SNIVRLYINNNSLSGSILTNIGNLKFLFELDLSF------LPLSVGNLTNLKSLGLMDNH 225
             +  L++  N L+GSI   +G ++ + +L++S       +P S G LT L+ L L DN 
Sbjct: 310 KTLAVLHLYLNQLNGSIPPELGEMESMIDLEISENKLTGPVPDSFGKLTALEWLFLRDNQ 369

Query: 226 LSGSIPPSFGNSM-LTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNC 284
           LSG IPP   NS  LT L L  N+FTG+LP  ICRGG LE   + +NHF+G +P+SLR+C
Sbjct: 370 LSGPIPPGIANSTELTVLQLDTNNFTGFLPDTICRGGKLENLTLDDNHFEGPVPKSLRDC 429

Query: 285 TSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNN 344
            SLIRVR  GN+ +G+ISEA G+YP L FIDLS NNF+G++S+NW +  KL    +S N+
Sbjct: 430 KSLIRVRFKGNSFSGDISEAFGVYPTLNFIDLSNNNFHGQLSANWEQSQKLVAFILSNNS 489

Query: 345 ITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSL 404
           ITG IP EI NM+QL  LDLS N I GE+P+ +  +N ++KL L GN+L+G++P+ I  L
Sbjct: 490 ITGAIPPEIWNMTQLSQLDLSSNRITGELPESISNINRISKLQLNGNRLSGKIPSGIRLL 549

Query: 405 IELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNL 464
             LEYLD S+N+F++ +P +L NL +L+Y+ LS N     +P+ L KL QL  LD S+N 
Sbjct: 550 TNLEYLDLSSNRFSSEIPPTLNNLPRLYYMNLSRNDLDQTIPEGLTKLSQLQMLDLSYNQ 609

Query: 465 FGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNSTAFR 524
             GEI  Q  SL++LE+L+LSHNNLSG IP  F+ M  L+ +D+S N LQGP+P++ AFR
Sbjct: 610 LDGEISSQFRSLQNLERLDLSHNNLSGQIPPSFKDMLALTHVDVSHNNLQGPIPDNAAFR 669

Query: 525 NAPVEALEGNKELCGGV---KGMQPCKVFSSHKQNSGGKWFA-VVFPVLGALFVSMALIA 580
           NAP +A EGNK+LCG V   +G++PC + SS K +        ++ P++GA+ +      
Sbjct: 670 NAPPDAFEGNKDLCGSVNTTQGLKPCSITSSKKSHKDRNLIIYILVPIIGAIIILSVCAG 729

Query: 581 IFILRKQKSDSGDRQSSNQNPQGLFSILNFEGKLVYDEIVRETNDFDAEYCIGNGGHGSV 640
           IFI  ++++   +  + +++     SI +F+GK+ Y EI++ T +FD +Y IG GGHG V
Sbjct: 730 IFICFRKRTKQIEEHTDSESGGETLSIFSFDGKVRYQEIIKATGEFDPKYLIGTGGHGKV 789

Query: 641 YRAELPSGEVVAVKKFHSSIPC--DQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQH 698
           Y+A+LP+  ++AVKK + +        + ++EFL E++ALTEIRHRN+VK +GFCSH ++
Sbjct: 790 YKAKLPNA-IMAVKKLNETTDSSISNPSTKQEFLNEIRALTEIRHRNVVKLFGFCSHRRN 848

Query: 699 SFLVYEFLERGSLAAIL 715
           +FLVYE++ERGSL  +L
Sbjct: 849 TFLVYEYMERGSLRKVL 865

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	716
TAIR|locus:2138268	1045	AT4G08850 [Arabidopsis thalian	0.924	0.633	0.432	1.6e-148
TAIR|locus:2011339	1120	AT1G35710 [Arabidopsis thalian	0.916	0.585	0.434	8.6e-143
TAIR|locus:2160791	1102	AT5G63930 [Arabidopsis thalian	0.914	0.594	0.334	6.7e-88
TAIR|locus:2085949	1141	AT3G24240 [Arabidopsis thalian	0.689	0.432	0.342	1.1e-64
TAIR|locus:2154344	1135	AT5G48940 [Arabidopsis thalian	0.610	0.385	0.336	1.1e-85
TAIR|locus:2020417	1101	AT1G17230 [Arabidopsis thalian	0.910	0.592	0.329	1.1e-85
TAIR|locus:2046525	1124	AT2G33170 [Arabidopsis thalian	0.914	0.582	0.331	1.1e-85
TAIR|locus:2156349	1252	GSO2 "GASSHO 2" [Arabidopsis t	0.900	0.515	0.325	6.6e-85
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.966	0.554	0.319	1.1e-83
TAIR|locus:2032697	1123	PEPR1 "PEP1 receptor 1" [Arabi	0.914	0.583	0.308	1.7e-82

TAIR|locus:2138268 AT4G08850 [Arabidopsis thaliana (taxid:3702)]

 Score = 1450 (515.5 bits), Expect = 1.6e-148, P = 1.6e-148
 Identities = 293/677 (43%), Positives = 433/677 (63%)

Query:    52 RVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQ 111
             +VT I++ +  L+G +   SF +  +LV+L L +N   G+IPS+IGNL  L  + LD N 
Sbjct:   191 KVTEIAIYDNLLTGPIPS-SFGNLTKLVNLYLFINSLSGSIPSEIGNLPNLRELCLDRNN 249

Query:   112 LSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNL 171
             L+GKIP+  G L ++ +L+   N+L G IPPE+  +++++ L L++N L G +P  LGN+
Sbjct:   250 LTGKIPSSFGNLKNVTLLNMFENQLSGEIPPEIGNMTALDTLSLHTNKLTGPIPSTLGNI 309

Query:   172 SNIVRLYINNNSLSGSILTNIGNLKFLFELDLSF------LPLSVGNLTNLKSLGLMDNH 225
               +  L++  N L+GSI   +G ++ + +L++S       +P S G LT L+ L L DN 
Sbjct:   310 KTLAVLHLYLNQLNGSIPPELGEMESMIDLEISENKLTGPVPDSFGKLTALEWLFLRDNQ 369

Query:   226 LSGSIPPSFGNSM-LTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNC 284
             LSG IPP   NS  LT L L  N+FTG+LP  ICRGG LE   + +NHF+G +P+SLR+C
Sbjct:   370 LSGPIPPGIANSTELTVLQLDTNNFTGFLPDTICRGGKLENLTLDDNHFEGPVPKSLRDC 429

Query:   285 TSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNN 344
              SLIRVR  GN+ +G+ISEA G+YP L FIDLS NNF+G++S+NW +  KL    +S N+
Sbjct:   430 KSLIRVRFKGNSFSGDISEAFGVYPTLNFIDLSNNNFHGQLSANWEQSQKLVAFILSNNS 489

Query:   345 ITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSL 404
             ITG IP EI NM+QL  LDLS N I GE+P+ +  +N ++KL L GN+L+G++P+ I  L
Sbjct:   490 ITGAIPPEIWNMTQLSQLDLSSNRITGELPESISNINRISKLQLNGNRLSGKIPSGIRLL 549

Query:   405 IELEYLDFSANKFNNSVPEXXXXXXXXXXXXXXXXQFXXXXXXXXXXXXXXSELDASHNL 464
               LEYLD S+N+F++ +P                                   LD S+N 
Sbjct:   550 TNLEYLDLSSNRFSSEIPPTLNNLPRLYYMNLSRNDLDQTIPEGLTKLSQLQMLDLSYNQ 609

Query:   465 FGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNSTAFR 524
               GEI  Q  SL++LE+L+LSHNNLSG IP  F+ M  L+ +D+S N LQGP+P++ AFR
Sbjct:   610 LDGEISSQFRSLQNLERLDLSHNNLSGQIPPSFKDMLALTHVDVSHNNLQGPIPDNAAFR 669

Query:   525 NAPVEALEGNKELCGGV---KGMQPCKVFSSHKQNSGGKWFA-VVFPVLGALFVSMALIA 580
             NAP +A EGNK+LCG V   +G++PC + SS K +        ++ P++GA+ +      
Sbjct:   670 NAPPDAFEGNKDLCGSVNTTQGLKPCSITSSKKSHKDRNLIIYILVPIIGAIIILSVCAG 729

Query:   581 IFILRKQKSDSGDRQSSNQNPQGLFSILNFEGKLVYDEIVRETNDFDAEYCIGNGGHGSV 640
             IFI  ++++   +  + +++     SI +F+GK+ Y EI++ T +FD +Y IG GGHG V
Sbjct:   730 IFICFRKRTKQIEEHTDSESGGETLSIFSFDGKVRYQEIIKATGEFDPKYLIGTGGHGKV 789

Query:   641 YRAELPSGEVVAVKKFHSSIPCD--QIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQH 698
             Y+A+LP+  ++AVKK + +        + ++EFL E++ALTEIRHRN+VK +GFCSH ++
Sbjct:   790 YKAKLPNA-IMAVKKLNETTDSSISNPSTKQEFLNEIRALTEIRHRNVVKLFGFCSHRRN 848

Query:   699 SFLVYEFLERGSLAAIL 715
             +FLVYE++ERGSL  +L
Sbjct:   849 TFLVYEYMERGSLRKVL 865

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0006995 "cellular response to nitrogen starvation" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2011339 AT1G35710 [Arabidopsis thaliana (taxid:3702)]

 Score = 1396 (496.5 bits), Expect = 8.6e-143, P = 8.6e-143
 Identities = 295/679 (43%), Positives = 425/679 (62%)

Query:    53 VTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQL 112
             +TN++L    L+G++   S  +   L  L L  N   G IP ++GN+  +  + L +N+L
Sbjct:   272 MTNLALSQNKLTGSIPS-SLGNLKNLTLLSLFQNYLTGGIPPKLGNIESMIDLELSNNKL 330

Query:   113 SGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLS 172
             +G IP+ +G L +L +L    N L G IPPE+  + S+ +L L +N L GS+P   GNL 
Sbjct:   331 TGSIPSSLGNLKNLTILYLYENYLTGVIPPELGNMESMIDLQLNNNKLTGSIPSSFGNLK 390

Query:   173 NIVRLYINNNSLSGSILTNIGNLKFLFELDLS------FLPLSVGNLTNLKSLGLMDNHL 226
             N+  LY+  N L+G I   +GN++ +  LDLS       +P S GN T L+SL L  NHL
Sbjct:   391 NLTYLYLYLNYLTGVIPQELGNMESMINLDLSQNKLTGSVPDSFGNFTKLESLYLRVNHL 450

Query:   227 SGSIPPSFGNSM-LTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCT 285
             SG+IPP   NS  LT L L  N+FTG+ P  +C+G  L+   +  NH +G IP+SLR+C 
Sbjct:   451 SGAIPPGVANSSHLTTLILDTNNFTGFFPETVCKGRKLQNISLDYNHLEGPIPKSLRDCK 510

Query:   286 SLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNI 345
             SLIR R  GN  TG+I EA G+YP+L FID S N F+GEISSNW K PKLG L +S NNI
Sbjct:   511 SLIRARFLGNKFTGDIFEAFGIYPDLNFIDFSHNKFHGEISSNWEKSPKLGALIMSNNNI 570

Query:   346 TGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLI 405
             TG IP EI NM+QL  LDLS N++ GE+P+ +G L +L++L L GNQL+GR+P  +  L 
Sbjct:   571 TGAIPTEIWNMTQLVELDLSTNNLFGELPEAIGNLTNLSRLRLNGNQLSGRVPAGLSFLT 630

Query:   406 ELEYLDFSANKFNNSVPEXXXXXXXXXXXXXXXXQFXXXXXXXXXXXXXXSELDASHNLF 465
              LE LD S+N F++ +P+                +F              ++LD SHN  
Sbjct:   631 NLESLDLSSNNFSSEIPQTFDSFLKLHDMNLSRNKFDGSIPRLSKLTQL-TQLDLSHNQL 689

Query:   466 GGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNSTAFRN 525
              GEIP Q+ SL+SL+KL+LSHNNLSGLIP  FEGM  L+ +DIS+N+L+GP+P++  FR 
Sbjct:   690 DGEIPSQLSSLQSLDKLDLSHNNLSGLIPTTFEGMIALTNVDISNNKLEGPLPDTPTFRK 749

Query:   526 APVEALEGNKELCGGV--KGMQPCKVFSSHKQNSGGKWFAVVFPVLGALFVSMALIA--- 580
             A  +ALE N  LC  +  + ++PC+     K+N G     ++ P+LG L + +++ A   
Sbjct:   750 ATADALEENIGLCSNIPKQRLKPCRELKKPKKN-GNLVVWILVPILGVLVI-LSICANTF 807

Query:   581 IFILRKQKSDSGDRQSSNQNPQGLFSILNFEGKLVYDEIVRETNDFDAEYCIGNGGHGSV 640
              + +RK+K  +G R +  +  + + SI + +GK  Y +I+  TN+FD  + IG GG+  V
Sbjct:   808 TYCIRKRKLQNG-RNTDPETGENM-SIFSVDGKFKYQDIIESTNEFDPTHLIGTGGYSKV 865

Query:   641 YRAELPSGEVVAVKKFHSSIPCDQIAD---QKEFLTEVQALTEIRHRNIVKFYGFCSHAQ 697
             YRA L    ++AVK+ H +I  ++I+    ++EFL EV+ALTEIRHRN+VK +GFCSH +
Sbjct:   866 YRANLQD-TIIAVKRLHDTID-EEISKPVVKQEFLNEVKALTEIRHRNVVKLFGFCSHRR 923

Query:   698 HSFLVYEFLERGSLAAILS 716
             H+FL+YE++E+GSL  +L+
Sbjct:   924 HTFLIYEYMEKGSLNKLLA 942

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

TAIR|locus:2160791 AT5G63930 [Arabidopsis thaliana (taxid:3702)]

 Score = 878 (314.1 bits), Expect = 6.7e-88, P = 6.7e-88
 Identities = 227/678 (33%), Positives = 331/678 (48%)

Query:    56 ISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGK 115
             + L    LSG L         +L  + L  N F G IP +I N T L  ++L  NQL G 
Sbjct:   222 LGLAQNQLSGELPK-EIGMLKKLSQVILWENEFSGFIPREISNCTSLETLALYKNQLVGP 280

Query:   116 IPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIV 175
             IP E+G L  L+ L    N L+G+IP E+  LS   E+    N L G +P  LGN+  + 
Sbjct:   281 IPKELGDLQSLEFLYLYRNGLNGTIPREIGNLSYAIEIDFSENALTGEIPLELGNIEGLE 340

Query:   176 RLYINNNSLSGSILTNIGNLKFLFELDLSF------LPLSVGNLTNLKSLGLMDNHLSGS 229
              LY+  N L+G+I   +  LK L +LDLS       +PL    L  L  L L  N LSG+
Sbjct:   341 LLYLFENQLTGTIPVELSTLKNLSKLDLSINALTGPIPLGFQYLRGLFMLQLFQNSLSGT 400

Query:   230 IPPSFGNSMLTW-LTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLI 288
             IPP  G     W L +S NH +G +P  +C    +    +  N+  G IP  +  C +L+
Sbjct:   401 IPPKLGWYSDLWVLDMSDNHLSGRIPSYLCLHSNMIILNLGTNNLSGNIPTGITTCKTLV 460

Query:   289 RVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGG 348
             ++RL  NNL G     L    N+T I+L +N F G I    G C  L  L ++ N  TG 
Sbjct:   461 QLRLARNNLVGRFPSNLCKQVNVTAIELGQNRFRGSIPREVGNCSALQRLQLADNGFTGE 520

Query:   349 IPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELE 408
             +PREIG +SQL  L++S N + GE+P E+     L +L +  N  +G LP+E+GSL +LE
Sbjct:   521 LPREIGMLSQLGTLNISSNKLTGEVPSEIFNCKMLQRLDMCCNNFSGTLPSEVGSLYQLE 580

Query:   409 YLDFSANKFNNSVPEXXXXXXXXXXXXXXXXQFXXXXXXXXXXXXXXS-ELDASHNLFGG 467
              L  S N  + ++P                  F                 L+ S+N   G
Sbjct:   581 LLKLSNNNLSGTIPVALGNLSRLTELQMGGNLFNGSIPRELGSLTGLQIALNLSYNKLTG 640

Query:   468 EIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNSTAFRNAP 527
             EIP ++ +L  LE L L++NNLSG IP+ F  +  L   + S N L GP+P     RN  
Sbjct:   641 EIPPELSNLVMLEFLLLNNNNLSGEIPSSFANLSSLLGYNFSYNSLTGPIP---LLRNIS 697

Query:   528 VEALEGNKELCGGVKGM----QPCKVFSSHKQNSG---GKWFAVVFPVLGALFVSMALIA 580
             + +  GN+ LCG         QP     S  +  G    K  A+   V+G + + +  + 
Sbjct:   698 MSSFIGNEGLCGPPLNQCIQTQPFAPSQSTGKPGGMRSSKIIAITAAVIGGVSLMLIALI 757

Query:   581 IFILRKQKSDSGDRQSSNQNPQGLFSILNFEGK--LVYDEIVRETNDFDAEYCIGNGGHG 638
             ++++R+            Q P  +   + F  K    + ++V  T++FD  + +G G  G
Sbjct:   758 VYLMRRPVRTVASSAQDGQ-PSEMSLDIYFPPKEGFTFQDLVAATDNFDESFVVGRGACG 816

Query:   639 SVYRAELPSGEVVAVKKFHSSIPCDQIAD-QKEFLTEVQALTEIRHRNIVKFYGFCSHAQ 697
             +VY+A LP+G  +AVKK  S+       +    F  E+  L  IRHRNIVK +GFC+H  
Sbjct:   817 TVYKAVLPAGYTLAVKKLASNHEGGNNNNVDNSFRAEILTLGNIRHRNIVKLHGFCNHQG 876

Query:   698 HSFLVYEFLERGSLAAIL 715
              + L+YE++ +GSL  IL
Sbjct:   877 SNLLLYEYMPKGSLGEIL 894

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2085949 AT3G24240 [Arabidopsis thaliana (taxid:3702)]

 Score = 667 (239.9 bits), Expect = 1.1e-64, P = 1.1e-64
 Identities = 174/508 (34%), Positives = 254/508 (50%)

Query:    56 ISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGK 115
             + L + GL G +  +S S    L  L L+ N   G IP  I   +KL  + L  N L+G 
Sbjct:   134 LDLSSNGLVGDI-PWSLSKLRNLETLILNSNQLTGKIPPDISKCSKLKSLILFDNLLTGS 192

Query:   116 IPAEVGLLTHLKVLSFQFN-ELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNI 174
             IP E+G L+ L+V+    N E+ G IP E+   S++  L L    ++G+LP  LG L  +
Sbjct:   193 IPTELGKLSGLEVIRIGGNKEISGQIPSEIGDCSNLTVLGLAETSVSGNLPSSLGKLKKL 252

Query:   175 VRLYINNNSLSGSILTNIGNLK-----FLFELDLS-FLPLSVGNLTNLKSLGLMDNHLSG 228
               L I    +SG I +++GN       FL+E  LS  +P  +G LT L+ L L  N L G
Sbjct:   253 ETLSIYTTMISGEIPSDLGNCSELVDLFLYENSLSGSIPREIGQLTKLEQLFLWQNSLVG 312

Query:   229 SIPPSFGN-SMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSL 287
              IP   GN S L  + LS N  +G +P +I R   LE F++S+N F G+IP ++ NC+SL
Sbjct:   313 GIPEEIGNCSNLKMIDLSLNLLSGSIPSSIGRLSFLEEFMISDNKFSGSIPTTISNCSSL 372

Query:   288 IRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITG 347
             ++++L+ N ++G I   LG    LT      N   G I      C  L  L++S N++TG
Sbjct:   373 VQLQLDKNQISGLIPSELGTLTKLTLFFAWSNQLEGSIPPGLADCTDLQALDLSRNSLTG 432

Query:   348 GIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIEL 407
              IP  +  +  L  L L  N + G IP+E+G  +SL +L L  N++TG +P+ IGSL ++
Sbjct:   433 TIPSGLFMLRNLTKLLLISNSLSGFIPQEIGNCSSLVRLRLGFNRITGEIPSGIGSLKKI 492

Query:   408 EYLDFSANKFNNSVPEXXXXXXXXXXXXXXXXQFXXXXXXXXXXXXXXSELDASHNLFGG 467
              +LDFS+N+ +  VP+                                  LD S N F G
Sbjct:   493 NFLDFSSNRLHGKVPDEIGSCSELQMIDLSNNSLEGSLPNPVSSLSGLQVLDVSANQFSG 552

Query:   468 EIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNSTAFRNAP 527
             +IP  +  L SL KL LS N  SG IP       GL ++D+  N+L G +P+        
Sbjct:   553 KIPASLGRLVSLNKLILSKNLFSGSIPTSLGMCSGLQLLDLGSNELSGEIPSELG----D 608

Query:   528 VEALEGNKELCGG-VKGMQPCKVFSSHK 554
             +E LE    L    + G  P K+ S +K
Sbjct:   609 IENLEIALNLSSNRLTGKIPSKIASLNK 636

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2154344 AT5G48940 [Arabidopsis thaliana (taxid:3702)]

 Score = 626 (225.4 bits), Expect = 1.1e-85, Sum P(2) = 1.1e-85
 Identities = 151/449 (33%), Positives = 233/449 (51%)

Query:    56 ISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGK 115
             + L  T +SG+L   S     +L  L +      G IP ++GN ++L  + L  N LSG 
Sbjct:   232 LGLAATKISGSL-PVSLGQLSKLQSLSVYSTMLSGEIPKELGNCSELINLFLYDNDLSGT 290

Query:   116 IPAEVGLLTHL-KVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNI 174
             +P E+G L +L K+L +Q N L G IP E+  + S+  + L  N+ +G++P   GNLSN+
Sbjct:   291 LPKELGKLQNLEKMLLWQ-NNLHGPIPEEIGFMKSLNAIDLSMNYFSGTIPKSFGNLSNL 349

Query:   175 VRLYINNNSLSGSILTNIGNLKFL--FELDLS----FLPLSVGNLTNLKSLGLMDNHLSG 228
               L +++N+++GSI + + N   L  F++D +     +P  +G L  L       N L G
Sbjct:   350 QELMLSSNNITGSIPSILSNCTKLVQFQIDANQISGLIPPEIGLLKELNIFLGWQNKLEG 409

Query:   229 SIPPSF-GNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSL 287
             +IP    G   L  L LS N+ TG LP  + +   L   ++  N   G IP  + NCTSL
Sbjct:   410 NIPDELAGCQNLQALDLSQNYLTGSLPAGLFQLRNLTKLLLISNAISGVIPLEIGNCTSL 469

Query:   288 IRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITG 347
             +R+RL  N +TG I + +G   NL+F+DLS NN  G +      C +L  LN+S N + G
Sbjct:   470 VRLRLVNNRITGEIPKGIGFLQNLSFLDLSENNLSGPVPLEISNCRQLQMLNLSNNTLQG 529

Query:   348 GIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIEL 407
              +P  + ++++LQ LD+S N + G+IP  LG L SL +LIL  N   G +P+ +G    L
Sbjct:   530 YLPLSLSSLTKLQVLDVSSNDLTGKIPDSLGHLISLNRLILSKNSFNGEIPSSLGHCTNL 589

Query:   408 EYLDFSANKFNNSVPEXXXXXXXXXXXXXXX-XQFXXXXXXXXXXXXXXSELDASHNLFG 466
             + LD S+N  + ++PE                                 S LD SHN+  
Sbjct:   590 QLLDLSSNNISGTIPEELFDIQDLDIALNLSWNSLDGFIPERISALNRLSVLDISHNMLS 649

Query:   467 GEIPFQICSLKSLEKLNLSHNNLSGLIPN 495
             G++   +  L++L  LN+SHN  SG +P+
Sbjct:   650 GDLS-ALSGLENLVSLNISHNRFSGYLPD 677

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2020417 AT1G17230 [Arabidopsis thaliana (taxid:3702)]

 Score = 857 (306.7 bits), Expect = 1.1e-85, P = 1.1e-85
 Identities = 222/674 (32%), Positives = 328/674 (48%)

Query:    57 SLRNTGLSGTLRDFSF-SSFPQLVHL-DLSL--NGFFGTIPSQIGNLTKLSYISLDSNQL 112
             SL+  GL+  L + S      +L +L DL L  N   G IP  +GN+++L  ++L  N  
Sbjct:   212 SLKVLGLAENLLEGSLPKQLEKLQNLTDLILWQNRLSGEIPPSVGNISRLEVLALHENYF 271

Query:   113 SGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLS 172
             +G IP E+G LT +K L    N+L G IP E+  L    E+    N L G +P   G++ 
Sbjct:   272 TGSIPREIGKLTKMKRLYLYTNQLTGEIPREIGNLIDAAEIDFSENQLTGFIPKEFGHIL 331

Query:   173 NIVRLYINNNSLSGSILTNIGNLKFLFELDLSF------LPLSVGNLTNLKSLGLMDNHL 226
             N+  L++  N L G I   +G L  L +LDLS       +P  +  L  L  L L DN L
Sbjct:   332 NLKLLHLFENILLGPIPRELGELTLLEKLDLSINRLNGTIPQELQFLPYLVDLQLFDNQL 391

Query:   227 SGSIPPSFG-NSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCT 285
              G IPP  G  S  + L +S N  +G +P + CR   L    +  N   G IP  L+ C 
Sbjct:   392 EGKIPPLIGFYSNFSVLDMSANSLSGPIPAHFCRFQTLILLSLGSNKLSGNIPRDLKTCK 451

Query:   286 SLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNI 345
             SL ++ L  N LTG++   L    NLT ++L +N   G IS++ GK   L  L ++ NN 
Sbjct:   452 SLTKLMLGDNQLTGSLPIELFNLQNLTALELHQNWLSGNISADLGKLKNLERLRLANNNF 511

Query:   346 TGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLI 405
             TG IP EIGN++++   ++S N + G IPKELG   ++ +L L GN+ +G +  E+G L+
Sbjct:   512 TGEIPPEIGNLTKIVGFNISSNQLTGHIPKELGSCVTIQRLDLSGNKFSGYIAQELGQLV 571

Query:   406 ELEYLDFSANKFNNSVPEXXXXXXXXXXXXXXXXQFXXXXXXXXXXXXXXS-ELDASHNL 464
              LE L  S N+    +P                                    L+ SHN 
Sbjct:   572 YLEILRLSDNRLTGEIPHSFGDLTRLMELQLGGNLLSENIPVELGKLTSLQISLNISHNN 631

Query:   465 FGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNSTAFR 524
               G IP  + +L+ LE L L+ N LSG IP     +  L I +IS+N L G VP++  F+
Sbjct:   632 LSGTIPDSLGNLQMLEILYLNDNKLSGEIPASIGNLMSLLICNISNNNLVGTVPDTAVFQ 691

Query:   525 NAPVEALEGNKELCGGVKG-MQPCKVFSSHKQN---SGG---KWFAVVFPVLGALFVSMA 577
                     GN  LC   +   QP    S  K N   +G    K   +   V+G++F+ + 
Sbjct:   692 RMDSSNFAGNHGLCNSQRSHCQPLVPHSDSKLNWLINGSQRQKILTITCIVIGSVFL-IT 750

Query:   578 LIAIFILRKQKSDSGDRQSSNQNPQGLFSILNFEGKLVYDEIVRETNDFDAEYCIGNGGH 637
              + +    K++  +         P  + S    +    Y  +V  T +F  +  +G G  
Sbjct:   751 FLGLCWTIKRREPAFVALEDQTKPDVMDSYYFPKKGFTYQGLVDATRNFSEDVVLGRGAC 810

Query:   638 GSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ 697
             G+VY+AE+  GEV+AVKK +S    +  +    F  E+  L +IRHRNIVK YGFC H  
Sbjct:   811 GTVYKAEMSGGEVIAVKKLNSR--GEGASSDNSFRAEISTLGKIRHRNIVKLYGFCYHQN 868

Query:   698 HSFLVYEFLERGSL 711
              + L+YE++ +GSL
Sbjct:   869 SNLLLYEYMSKGSL 882

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2046525 AT2G33170 [Arabidopsis thaliana (taxid:3702)]

 Score = 857 (306.7 bits), Expect = 1.1e-85, P = 1.1e-85
 Identities = 227/685 (33%), Positives = 335/685 (48%)

Query:    60 NTGLSGTLRDFSFSSFPQ----LVHLD---LSLNGFFGTIPSQIGNLTKLSYISLDSNQL 112
             N  L G  ++F     P+    LV L    L  N F G IP  IGNLT L  ++L  N L
Sbjct:   230 NLKLLGLAQNFISGELPKEIGMLVKLQEVILWQNKFSGFIPKDIGNLTSLETLALYGNSL 289

Query:   113 SGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLS 172
              G IP+E+G +  LK L    N+L+G+IP E+ +LS + E+    N L+G +P  L  +S
Sbjct:   290 VGPIPSEIGNMKSLKKLYLYQNQLNGTIPKELGKLSKVMEIDFSENLLSGEIPVELSKIS 349

Query:   173 NIVRLYINNNSLSGSILTNIGNLKFLFELDLSF------LPLSVGNLTNLKSLGLMDNHL 226
              +  LY+  N L+G I   +  L+ L +LDLS       +P    NLT+++ L L  N L
Sbjct:   350 ELRLLYLFQNKLTGIIPNELSKLRNLAKLDLSINSLTGPIPPGFQNLTSMRQLQLFHNSL 409

Query:   227 SGSIPPSFGNSMLTWLT-LSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCT 285
             SG IP   G     W+   S N  +G +P  IC+   L    +  N   G IP  +  C 
Sbjct:   410 SGVIPQGLGLYSPLWVVDFSENQLSGKIPPFICQQSNLILLNLGSNRIFGNIPPGVLRCK 469

Query:   286 SLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNI 345
             SL+++R+ GN LTG     L    NL+ I+L +N F G +    G C KL  L+++ N  
Sbjct:   470 SLLQLRVVGNRLTGQFPTELCKLVNLSAIELDQNRFSGPLPPEIGTCQKLQRLHLAANQF 529

Query:   346 TGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLI 405
             +  +P EI  +S L   ++S N + G IP E+     L +L L  N   G LP E+GSL 
Sbjct:   530 SSNLPNEISKLSNLVTFNVSSNSLTGPIPSEIANCKMLQRLDLSRNSFIGSLPPELGSLH 589

Query:   406 ELEYLDFSANKFNNSVPEXXXXXXXXXXXXXXXXQFXXXXXXXXXXXXXXS-ELDASHNL 464
             +LE L  S N+F+ ++P                  F                 ++ S+N 
Sbjct:   590 QLEILRLSENRFSGNIPFTIGNLTHLTELQMGGNLFSGSIPPQLGLLSSLQIAMNLSYND 649

Query:   465 FGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNSTAFR 524
             F GEIP +I +L  L  L+L++N+LSG IP  FE +  L   + S N L G +P++  F+
Sbjct:   650 FSGEIPPEIGNLHLLMYLSLNNNHLSGEIPTTFENLSSLLGCNFSYNNLTGQLPHTQIFQ 709

Query:   525 NAPVEALEGNKELCGG-VKGMQPCKV----FSSHKQNSG--GKWFAVVFPVLGALFVSMA 577
             N  + +  GNK LCGG ++   P        SS K  S   G+   +V  V+G + + + 
Sbjct:   710 NMTLTSFLGNKGLCGGHLRSCDPSHSSWPHISSLKAGSARRGRIIIIVSSVIGGISLLLI 769

Query:   578 LIAIFILRKQKSDSGDRQSSNQNPQGLFSILNFEGK--LVYDEIVRETNDFDAEYCIGNG 635
              I +  LR     +      ++ P    S + F  K      +I+  T  F   Y +G G
Sbjct:   770 AIVVHFLRNPVEPTAP-YVHDKEPFFQESDIYFVPKERFTVKDILEATKGFHDSYIVGRG 828

Query:   636 GHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQK---EFLTEVQALTEIRHRNIVKFYGF 692
               G+VY+A +PSG+ +AVKK  S+   +          F  E+  L +IRHRNIV+ Y F
Sbjct:   829 ACGTVYKAVMPSGKTIAVKKLESNREGNNNNSNNTDNSFRAEILTLGKIRHRNIVRLYSF 888

Query:   693 CSH--AQHSFLVYEFLERGSLAAIL 715
             C H  +  + L+YE++ RGSL  +L
Sbjct:   889 CYHQGSNSNLLLYEYMSRGSLGELL 913

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006486 "protein glycosylation" evidence=RCA

TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 854 (305.7 bits), Expect = 6.6e-85, P = 6.6e-85
 Identities = 221/678 (32%), Positives = 334/678 (49%)

Query:    56 ISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGK 115
             + L N  L+G + D  F    +L +L L+ N   GT+ S I NLT L   +L  N L GK
Sbjct:   366 LDLSNNTLTGQIPDSLFQ-LVELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLEGK 424

Query:   116 IPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIV 175
             +P E+G L  L+++    N   G +P E+   + ++E+  Y N L+G +P  +G L ++ 
Sbjct:   425 VPKEIGFLGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGRLKDLT 484

Query:   176 RLYINNNSLSGSILTNIGNLKFLFELDLS------FLPLSVGNLTNLKSLGLMDNHLSGS 229
             RL++  N L G+I  ++GN   +  +DL+       +P S G LT L+   + +N L G+
Sbjct:   485 RLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQGN 544

Query:   230 IPPSFGN-SMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLI 288
             +P S  N   LT +  S N F G +   +C      +F V+EN F+G IP  L   T+L 
Sbjct:   545 LPDSLINLKNLTRINFSSNKFNGSISP-LCGSSSYLSFDVTENGFEGDIPLELGKSTNLD 603

Query:   289 RVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGG 348
             R+RL  N  TG I    G    L+ +D+SRN+  G I    G C KL  ++++ N ++G 
Sbjct:   604 RLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGV 663

Query:   349 IPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELE 408
             IP  +G +  L  L LS N  VG +P E+  L ++  L L GN L G +P EIG+L  L 
Sbjct:   664 IPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQALN 723

Query:   409 YLDFSANKFNNSVPEXXXXXXXXXXXXXXXXQFXXXX-XXXXXXXXXXSELDASHNLFGG 467
              L+   N+ +  +P                                  S LD S+N F G
Sbjct:   724 ALNLEENQLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTG 783

Query:   468 EIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNSTAFRNAP 527
              IP  I +L  LE L+LSHN L G +P     M  L  +++S N L+G +     F    
Sbjct:   784 RIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKLKKQ--FSRWQ 841

Query:   528 VEALEGNKELCGGVKGMQPCKVFSSHKQNSGGKWFAVVFPVLGALF-VSMALIAIFILRK 586
              +A  GN  LCG    +  C    S  Q S      V+   + +L  +++ ++ I +  K
Sbjct:   842 ADAFVGNAGLCGSP--LSHCNRAGSKNQRSLSPKTVVIISAISSLAAIALMVLVIILFFK 899

Query:   587 QKSD------SGD-----RQSSNQNPQGLFSILNFEGKLVYDEIVRETNDFDAEYCIGNG 635
             Q  D       G+       SS+Q P  LFS    +  + +D+I+  T+  + E+ IG+G
Sbjct:   900 QNHDLFKKVRGGNSAFSSNSSSSQAP--LFSNGGAKSDIKWDDIMEATHYLNEEFMIGSG 957

Query:   636 GHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSH 695
             G G VY+AEL +GE +AVKK    +  D +   K F  EV+ L  IRHR++VK  G+CS 
Sbjct:   958 GSGKVYKAELKNGETIAVKKI---LWKDDLMSNKSFNREVKTLGTIRHRHLVKLMGYCSS 1014

Query:   696 AQH--SFLVYEFLERGSL 711
                  + L+YE++  GS+
Sbjct:  1015 KADGLNLLIYEYMANGSV 1032

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009553 "embryo sac development" evidence=IMP

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 843 (301.8 bits), Expect = 1.1e-83, P = 1.1e-83
 Identities = 235/735 (31%), Positives = 356/735 (48%)

Query:     1 SNEEADALLKWKASLQSHNQSLLPSWTNASTNVSSKISPCAWYGISCNDAGRVTNISLRN 60
             +N  + +L K   S  ++ + L+ S T  S  +  ++S C            +  + L N
Sbjct:   320 NNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQ----------SLKQLDLSN 369

Query:    61 TGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEV 120
               L+G++ +  F    +L  L L  N   GT+   I NLT L ++ L  N L GK+P E+
Sbjct:   370 NSLAGSIPEALFE-LVELTDLYLHNNTLEGTLSPSISNLTNLQWLVLYHNNLEGKLPKEI 428

Query:   121 GLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYIN 180
               L  L+VL    N   G IP E+   +S++ + ++ NH  G +PP +G L  +  L++ 
Sbjct:   429 SALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGRLKELNLLHLR 488

Query:   181 NNSLSGSILTNIGNLKFLFELDLS------FLPLSVGNLTNLKSLGLMDNHLSGSIPPSF 234
              N L G +  ++GN   L  LDL+       +P S G L  L+ L L +N L G++P S 
Sbjct:   489 QNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPDSL 548

Query:   235 GNSM-LTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLN 293
              +   LT + LS N   G + H +C      +F V+ N F+  IP  L N  +L R+RL 
Sbjct:   549 ISLRNLTRINLSHNRLNGTI-HPLCGSSSYLSFDVTNNGFEDEIPLELGNSQNLDRLRLG 607

Query:   294 GNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREI 353
              N LTG I   LG    L+ +D+S N   G I      C KL  ++++ N ++G IP  +
Sbjct:   608 KNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWL 667

Query:   354 GNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFS 413
             G +SQL  L LS N  V  +P EL     L  L L GN L G +P EIG+L  L  L+  
Sbjct:   668 GKLSQLGELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGNLGALNVLNLD 727

Query:   414 ANKFNNSVPEXXXXXXXXXXXXXXXXQFXXXX-XXXXXXXXXXSELDASHNLFGGEIPFQ 472
              N+F+ S+P+                                 S LD S+N F G+IP  
Sbjct:   728 KNQFSGSLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPST 787

Query:   473 ICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNSTAFRNAPVEALE 532
             I +L  LE L+LSHN L+G +P     M  L  +++S N L G +     F   P ++  
Sbjct:   788 IGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKLKKQ--FSRWPADSFL 845

Query:   533 GNKELCGGVKGMQPC-KVFSSHKQNSGGKWFAVVFPVLGALF-VSMALIAIFILRKQKSD 590
             GN  LCG    +  C +V S++KQ        V+   + AL  + + ++ I +  KQ+ D
Sbjct:   846 GNTGLCGSP--LSRCNRVRSNNKQQGLSARSVVIISAISALTAIGLMILVIALFFKQRHD 903

Query:   591 --------SGDRQSSNQNPQGLFSIL--NFEGK--LVYDEIVRETNDFDAEYCIGNGGHG 638
                     S    SS+ + Q     L  N   K  + +++I+  T++   E+ IG+GG G
Sbjct:   904 FFKKVGHGSTAYTSSSSSSQATHKPLFRNGASKSDIRWEDIMEATHNLSEEFMIGSGGSG 963

Query:   639 SVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQH 698
              VY+AEL +GE VAVKK    +  D +   K F  EV+ L  IRHR++VK  G+CS    
Sbjct:   964 KVYKAELENGETVAVKKI---LWKDDLMSNKSFSREVKTLGRIRHRHLVKLMGYCSSKSE 1020

Query:   699 --SFLVYEFLERGSL 711
               + L+YE+++ GS+
Sbjct:  1021 GLNLLIYEYMKNGSI 1035

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2032697 PEPR1 "PEP1 receptor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 827 (296.2 bits), Expect = 1.7e-82, P = 1.7e-82
 Identities = 213/691 (30%), Positives = 343/691 (49%)

Query:    46 SCNDAGRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYI 105
             S N  G +T + + N  L G +R F   +   L+ LDLS N F G +P  +GN + L  +
Sbjct:   238 SLNLLGNLTTLFVGNNSLQGPVR-FGSPNCKNLLTLDLSYNEFEGGVPPALGNCSSLDAL 296

Query:   106 SLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLP 165
              + S  LSG IP+ +G+L +L +L+   N L GSIP E+   SS+  L L  N L G +P
Sbjct:   297 VIVSGNLSGTIPSSLGMLKNLTILNLSENRLSGSIPAELGNCSSLNLLKLNDNQLVGGIP 356

Query:   166 PFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFEL-----DLSF-LPLSVGNLTNLKSL 219
               LG L  +  L +  N  SG I   I   + L +L     +L+  LP+ +  +  LK  
Sbjct:   357 SALGKLRKLESLELFENRFSGEIPIEIWKSQSLTQLLVYQNNLTGELPVEMTEMKKLKIA 416

Query:   220 GLMDNHLSGSIPPSFG-NSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIP 278
              L +N   G+IPP  G NS L  +   GN  TG +P N+C G  L    +  N   GTIP
Sbjct:   417 TLFNNSFYGAIPPGLGVNSSLEEVDFIGNKLTGEIPPNLCHGRKLRILNLGSNLLHGTIP 476

Query:   279 ESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTL 338
              S+ +C ++ R  L  NNL+G + E      +L+F+D + NNF G I  + G C  L ++
Sbjct:   477 ASIGHCKTIRRFILRENNLSGLLPE-FSQDHSLSFLDFNSNNFEGPIPGSLGSCKNLSSI 535

Query:   339 NVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLP 398
             N+S N  TG IP ++GN+  L  ++LS N + G +P +L    SL +  +  N L G +P
Sbjct:   536 NLSRNRFTGQIPPQLGNLQNLGYMNLSRNLLEGSLPAQLSNCVSLERFDVGFNSLNGSVP 595

Query:   399 TEIGSLIELEYLDFSANKFNNSVPEXXXXXXXXXXXXXXXXQFXXXX-XXXXXXXXXXSE 457
             +   +   L  L  S N+F+  +P+                 F                +
Sbjct:   596 SNFSNWKGLTTLVLSENRFSGGIPQFLPELKKLSTLQIARNAFGGEIPSSIGLIEDLIYD 655

Query:   458 LDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPV 517
             LD S N   GEIP ++  L  L +LN+S+NNL+G + +  +G+  L  +D+S+NQ  GP+
Sbjct:   656 LDLSGNGLTGEIPAKLGDLIKLTRLNISNNNLTGSL-SVLKGLTSLLHVDVSNNQFTGPI 714

Query:   518 PNSTAFR--NAPVEALEGNKELC---------GGVKGMQPCKVFSSHKQNSGGKWFAVVF 566
             P++   +  + P  +  GN  LC              ++ CK  S  +++    W  V+ 
Sbjct:   715 PDNLEGQLLSEP-SSFSGNPNLCIPHSFSASNNSRSALKYCKDQSKSRKSGLSTWQIVLI 773

Query:   567 PVLGALFVSMALIA-IFILRKQKSDSGDRQSSNQNPQGLFSILNFEG-KLVYDEIVRETN 624
              VL +L V + ++A +FI  +++    ++ +        +     EG  L+ ++++  T+
Sbjct:   774 AVLSSLLVLVVVLALVFICLRRRKGRPEKDA--------YVFTQEEGPSLLLNKVLAATD 825

Query:   625 DFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHR 684
             + + +Y IG G HG VYRA L SG+V AVK+    +    I   +  + E+  + ++RHR
Sbjct:   826 NLNEKYTIGRGAHGIVYRASLGSGKVYAVKRL---VFASHIRANQSMMREIDTIGKVRHR 882

Query:   685 NIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
             N++K  GF        ++Y ++ +GSL  +L
Sbjct:   883 NLIKLEGFWLRKDDGLMLYRYMPKGSLYDVL 913

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0001653 "peptide receptor activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0045087 "innate immune response" evidence=TAS

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0004383 "guanylate cyclase activity" evidence=IDA

GO:0006955 "immune response" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: scaffold_104021.1 annotation not avaliable (1007 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	716
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-93
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-17
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	1e-16
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	3e-16
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	8e-16
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	7e-15
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-14
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	6e-14
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	1e-13
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	4e-13
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	8e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-12
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	1e-11
cd05049	280	cd05049, PTKc_Trk, Catalytic domain of the Protein	2e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-11
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	8e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-10
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-09
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-09
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	5e-09
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	5e-09
cd05032	277	cd05032, PTKc_InsR_like, Catalytic domain of Insul	6e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-09
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	1e-08
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	1e-08
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	3e-08
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	4e-08
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	4e-08
cd06610	267	cd06610, STKc_OSR1_SPAK, Catalytic domain of the P	6e-08
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	7e-08
cd05040	257	cd05040, PTKc_Ack_like, Catalytic domain of the Pr	1e-07
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	2e-07
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	2e-07
cd06917	277	cd06917, STKc_NAK1_like, Catalytic domain of Funga	2e-07
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	3e-07
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	3e-07
cd06613	262	cd06613, STKc_MAP4K3_like, Catalytic domain of Mit	3e-07
cd05094	291	cd05094, PTKc_TrkC, Catalytic domain of the Protei	7e-07
cd07830	283	cd07830, STKc_MAK_like, Catalytic domain of Male g	9e-07
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	1e-06
cd05092	280	cd05092, PTKc_TrkA, Catalytic domain of the Protei	1e-06
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	1e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-06
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	2e-06
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	2e-06
cd05083	254	cd05083, PTKc_Chk, Catalytic domain of the Protein	2e-06
cd05033	266	cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec	3e-06
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	3e-06
cd06628	267	cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain o	4e-06
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	4e-06
cd06631	265	cd06631, STKc_YSK4, Catalytic domain of the Protei	5e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-06
cd05085	250	cd05085, PTKc_Fer, Catalytic domain of the Protein	7e-06
cd05081	284	cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2)	9e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	1e-05
cd05042	269	cd05042, PTKc_Aatyk, Catalytic domain of the Prote	2e-05
cd05093	288	cd05093, PTKc_TrkB, Catalytic domain of the Protei	2e-05
cd05048	283	cd05048, PTKc_Ror, Catalytic Domain of the Protein	2e-05
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	2e-05
cd05084	252	cd05084, PTKc_Fes, Catalytic domain of the Protein	2e-05
cd05060	257	cd05060, PTKc_Syk_like, Catalytic domain of Spleen	3e-05
cd05052	263	cd05052, PTKc_Abl, Catalytic domain of the Protein	3e-05
cd07842	316	cd07842, STKc_CDK8_like, Catalytic domain of Cycli	3e-05
cd05087	269	cd05087, PTKc_Aatyk1_Aatyk3, Catalytic domain of t	4e-05
cd05112	256	cd05112, PTKc_Itk, Catalytic domain of the Protein	4e-05
cd07845	309	cd07845, STKc_CDK10, Catalytic domain of the Serin	5e-05
cd06609	274	cd06609, STKc_MST3_like, Catalytic domain of Mamma	6e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	7e-05
cd08224	267	cd08224, STKc_Nek6_Nek7, Catalytic domain of the P	7e-05
cd05579	265	cd05579, STKc_MAST_like, Catalytic domain of Micro	7e-05
cd05079	284	cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) doma	8e-05
cd07846	286	cd07846, STKc_CDKL2_3, Catalytic domain of the Ser	9e-05
cd05044	269	cd05044, PTKc_c-ros, Catalytic domain of the Prote	1e-04
cd05114	256	cd05114, PTKc_Tec_Rlk, Catalytic domain of the Pro	1e-04
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	1e-04
cd07860	284	cd07860, STKc_CDK2_3, Catalytic domain of the Seri	1e-04
cd07835	283	cd07835, STKc_CDK1_like, Catalytic domain of Cycli	1e-04
cd05050	288	cd05050, PTKc_Musk, Catalytic domain of the Protei	2e-04
cd05036	277	cd05036, PTKc_ALK_LTK, Catalytic domain of the Pro	2e-04
cd06611	280	cd06611, STKc_SLK_like, Catalytic domain of Ste20-	2e-04
cd06630	268	cd06630, STKc_MEKK1, Catalytic domain of the Prote	2e-04
cd05068	261	cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re	3e-04
cd05051	296	cd05051, PTKc_DDR, Catalytic domain of the Protein	4e-04
cd06608	275	cd06608, STKc_myosinIII_like, Catalytic domain of	4e-04
PLN00009	294	PLN00009, PLN00009, cyclin-dependent kinase A; Pro	4e-04
cd05045	290	cd05045, PTKc_RET, Catalytic domain of the Protein	5e-04
cd06621	287	cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of	5e-04
cd05580	290	cd05580, STKc_PKA, Catalytic domain of the Protein	6e-04
cd05065	269	cd05065, PTKc_EphR_B, Catalytic domain of the Prot	6e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-04
cd05086	268	cd05086, PTKc_Aatyk2, Catalytic domain of the Prot	7e-04
cd05063	268	cd05063, PTKc_EphR_A2, Catalytic domain of the Pro	8e-04
cd05057	279	cd05057, PTKc_EGFR_like, Catalytic domain of Epide	8e-04
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	8e-04
cd05071	262	cd05071, PTKc_Src, Catalytic domain of the Protein	8e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	9e-04
cd05080	283	cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma	0.001
cd05600	333	cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fun	0.001
cd05046	275	cd05046, PTK_CCK4, Pseudokinase domain of the Prot	0.001
cd06620	284	cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of	0.001
cd05113	256	cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro	0.001
cd06607	307	cd06607, STKc_TAO, Catalytic domain of the Protein	0.001
cd07843	293	cd07843, STKc_CDC2L1, Catalytic domain of the Seri	0.001
cd06616	288	cd06616, PKc_MKK4, Catalytic domain of the dual-sp	0.001
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	0.001
cd06624	268	cd06624, STKc_ASK, Catalytic domain of the Protein	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.002
cd06619	279	cd06619, PKc_MKK5, Catalytic domain of the dual-sp	0.002
cd05056	270	cd05056, PTKc_FAK, Catalytic domain of the Protein	0.002
cd05082	256	cd05082, PTKc_Csk, Catalytic domain of the Protein	0.002
cd06648	285	cd06648, STKc_PAK_II, Catalytic domain of the Prot	0.003
cd05088	303	cd05088, PTKc_Tie2, Catalytic domain of the Protei	0.003
cd07839	284	cd07839, STKc_CDK5, Catalytic domain of the Serine	0.003
cd05053	293	cd05053, PTKc_FGFR, Catalytic domain of the Protei	0.003
cd07861	285	cd07861, STKc_CDK1_euk, Catalytic domain of the Se	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  310 bits (796), Expect = 3e-93
 Identities = 247/800 (30%), Positives = 369/800 (46%), Gaps = 139/800 (17%)

Query: 3   EEADALLKWKASLQSHNQSLLPSWTNASTNVSSKISPCAWYGISCNDAGRVT-------N 55
           EE + LL +K+S+    + L        +N +S    C W GI+CN++ RV        N
Sbjct: 29  EELELLLSFKSSINDPLKYL--------SNWNSSADVCLWQGITCNNSSRVVSIDLSGKN 80

Query: 56  IS-----------------LRNTGLSGTLRDFSFS----------------------SFP 76
           IS                 L N  LSG + D  F+                      S P
Sbjct: 81  ISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIP 140

Query: 77  QLVHLDLSLN----------GFF--------------GTIPSQIGNLTKLSYISLDSNQL 112
            L  LDLS N          G F              G IP+ + NLT L +++L SNQL
Sbjct: 141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQL 200

Query: 113 SGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLS 172
            G+IP E+G +  LK +   +N L G IP E+  L+S+  L L  N+L G +P  LGNL 
Sbjct: 201 VGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLK 260

Query: 173 NIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLS------VGNLTNLKSLGLMDNHL 226
           N+  L++  N LSG I  +I +L+ L  LDLS   LS      V  L NL+ L L  N+ 
Sbjct: 261 NLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNF 320

Query: 227 SGSIPPSFGN-SMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCT 285
           +G IP +  +   L  L L  N F+G +P N+ +   L    +S N+  G IPE L +  
Sbjct: 321 TGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSG 380

Query: 286 SLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNI 345
           +L ++ L  N+L G I ++LG   +L  + L  N+F GE+ S + K P +  L++S NN+
Sbjct: 381 NLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNL 440

Query: 346 TGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLI 405
            G I     +M  LQ L L+ N   G +P   G                           
Sbjct: 441 QGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKR------------------------ 476

Query: 406 ELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLF 465
            LE LD S N+F+ +VP  LG+L +L  L LS N+   E+P EL    +L  LD SHN  
Sbjct: 477 -LENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQL 535

Query: 466 GGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNSTAFRN 525
            G+IP     +  L +L+LS N LSG IP     +  L  ++IS N L G +P++ AF  
Sbjct: 536 SGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLA 595

Query: 526 APVEALEGNKELCGGVK--GMQPCKVFSSHKQNSGGKWFAVVFPVLGALFVSMALIAIFI 583
               A+ GN +LCGG    G+ PCK            W+  +   LGA F+ +AL+A F 
Sbjct: 596 INASAVAGNIDLCGGDTTSGLPPCKRVRKTPS-----WWFYITCTLGA-FLVLALVA-FG 648

Query: 584 LRKQKSDSGDRQSSNQNPQGLFSILNFEGK----LVYDEIVRETNDFDAEYCIGNGGHGS 639
               +  +       +N  G + +  F+ K    +  ++I+    +   E  I  G  G+
Sbjct: 649 FVFIRGRNNLELKRVENEDGTWELQFFDSKVSKSITINDILSSLKE---ENVISRGKKGA 705

Query: 640 VYRAELPSGEV-VAVKKFH--SSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA 696
            Y+ +     +   VK+ +  +SIP  +IAD          + +++H NIVK  G C   
Sbjct: 706 SYKGKSIKNGMQFVVKEINDVNSIPSSEIAD----------MGKLQHPNIVKLIGLCRSE 755

Query: 697 QHSFLVYEFLERGSLAAILS 716
           + ++L++E++E  +L+ +L 
Sbjct: 756 KGAYLIHEYIEGKNLSEVLR 775

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 85.3 bits (211), Expect = 4e-17
 Identities = 40/95 (42%), Positives = 57/95 (60%), Gaps = 3/95 (3%)

Query: 313 FID-LSRNN--FYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHI 369
           FID L  +N    G I ++  K   L ++N+S N+I G IP  +G+++ L+ LDLS N  
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 370 VGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSL 404
            G IP+ LG+L SL  L L GN L+GR+P  +G  
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGR 513

Length = 623

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 79.9 bits (198), Expect = 1e-16
 Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 8/85 (9%)

Query: 632 IGNGGHGSVYRAEL-----PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNI 686
           +G G  G VY+  L          VAVK         QI   +EFL E + + ++ H NI
Sbjct: 7   LGEGAFGEVYKGTLKGKGDGKEVEVAVKTLKEDASEQQI---EEFLREARIMRKLDHPNI 63

Query: 687 VKFYGFCSHAQHSFLVYEFLERGSL 711
           VK  G C+  +   +V E++  G L
Sbjct: 64  VKLLGVCTEEEPLMIVMEYMPGGDL 88

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 79.1 bits (196), Expect = 3e-16
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 8/85 (9%)

Query: 632 IGNGGHGSVYRAEL-----PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNI 686
           +G G  G VY+ +L          VAVK              +EFL E + + ++ H N+
Sbjct: 7   LGEGAFGEVYKGKLKGKGGKKKVEVAVKTLKED---ASEQQIEEFLREARIMRKLDHPNV 63

Query: 687 VKFYGFCSHAQHSFLVYEFLERGSL 711
           VK  G C+  +  ++V E++E G L
Sbjct: 64  VKLLGVCTEEEPLYIVMEYMEGGDL 88

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 76.5 bits (189), Expect = 8e-16
 Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 4/85 (4%)

Query: 632 IGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
           +G GG G+VY A    +G+ VA+K        D  +  +E L E++ L ++ H NIVK Y
Sbjct: 1   LGEGGFGTVYLARDKKTGKKVAIKIIKKE---DSSSLLEELLREIEILKKLNHPNIVKLY 57

Query: 691 GFCSHAQHSFLVYEFLERGSLAAIL 715
           G      H +LV E+ E GSL  +L
Sbjct: 58  GVFEDENHLYLVMEYCEGGSLKDLL 82

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 74.9 bits (185), Expect = 7e-15
 Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 4/85 (4%)

Query: 632 IGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
           +G G  G VY A +  +G++VA+K            D++  L E++ L +++H NIV+ Y
Sbjct: 7   LGEGSFGKVYLARDKKTGKLVAIKVIKKK---KIKKDRERILREIKILKKLKHPNIVRLY 63

Query: 691 GFCSHAQHSFLVYEFLERGSLAAIL 715
                    +LV E+ E G L  +L
Sbjct: 64  DVFEDEDKLYLVMEYCEGGDLFDLL 88

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 75.4 bits (185), Expect = 2e-14
 Identities = 83/258 (32%), Positives = 115/258 (44%), Gaps = 34/258 (13%)

Query: 276 TIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGK-CPK 334
              E+L N   L  + LN N L  NISE L L  NLT +DL  NN   +I    G     
Sbjct: 84  DGSENLLNLLPLPSLDLNLNRLRSNISELLEL-TNLTSLDLDNNNIT-DIPPLIGLLKSN 141

Query: 335 LGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLT 394
           L  L++S N I   +P  + N+  L+ LDLS N +  ++PK L  L++L  L L GN+++
Sbjct: 142 LKELDLSDNKIES-LPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS 199

Query: 395 GRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQ 454
             LP EI  L  LE LD S N     +  SL NL  L  L LSNN+              
Sbjct: 200 -DLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKLE------------ 245

Query: 455 LSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQ 514
                        ++P  I +L +LE L+LS+N +S    +    +  L  +D+S N L 
Sbjct: 246 -------------DLPESIGNLSNLETLDLSNNQIS--SISSLGSLTNLRELDLSGNSLS 290

Query: 515 GPVPNSTAFRNAPVEALE 532
             +P            L 
Sbjct: 291 NALPLIALLLLLLELLLN 308

Length = 394

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 72.2 bits (178), Expect = 6e-14
 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 8/85 (9%)

Query: 632 IGNGGHGSVYRAEL-----PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNI 686
           +G G  G VY+  L      +   VAVK        ++   ++EFL E   + ++ H NI
Sbjct: 7   LGEGAFGEVYKGTLKGDGEGTETKVAVKTLKEGASEEE---REEFLEEASIMKKLSHPNI 63

Query: 687 VKFYGFCSHAQHSFLVYEFLERGSL 711
           V+  G C+  +  ++V E++  G L
Sbjct: 64  VRLLGVCTQGEPLYIVTEYMPGGDL 88

Length = 258

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 71.4 bits (176), Expect = 1e-13
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 7/84 (8%)

Query: 632 IGNGGHGSVYRAEL---PSGEV-VAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIV 687
           +G G  G VY+ +L         VAVK            ++K+FL E + + ++ H N+V
Sbjct: 3   LGEGAFGEVYKGKLKGKDGKTTEVAVKTLKED---ASEEERKDFLKEARVMKKLGHPNVV 59

Query: 688 KFYGFCSHAQHSFLVYEFLERGSL 711
           +  G C+  +  +LV E++E G L
Sbjct: 60  RLLGVCTEEEPLYLVLEYMEGGDL 83

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 69.5 bits (171), Expect = 4e-13
 Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 5/93 (5%)

Query: 625 DFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRH 683
            F+    IG GG G VY+A    +G+ VA+K     I  +    +++ + E+Q L + +H
Sbjct: 1   LFEILEKIGKGGFGEVYKARHKRTGKEVAIKV----IKLESKEKKEKIINEIQILKKCKH 56

Query: 684 RNIVKFYGFCSHAQHSFLVYEFLERGSLAAILS 716
            NIVK+YG        ++V EF   GSL  +L 
Sbjct: 57  PNIVKYYGSYLKKDELWIVMEFCSGGSLKDLLK 89

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 68.8 bits (169), Expect = 8e-13
 Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 5/88 (5%)

Query: 631 CIGNGGHGSVYRA-ELPSGEVVAVKKFH-SSIPCDQIADQKEFLTEVQALTEIRHRNIVK 688
            +G+G  G+VY+A    +G++VAVK     S    +    +    E++ L  + H NIV+
Sbjct: 6   KLGSGSFGTVYKAKHKGTGKIVAVKILKKRSEKSKK---DQTARREIRILRRLSHPNIVR 62

Query: 689 FYGFCSHAQHSFLVYEFLERGSLAAILS 716
                    H +LV E+ E G L   LS
Sbjct: 63  LIDAFEDKDHLYLVMEYCEGGDLFDYLS 90

Length = 260

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 69.5 bits (170), Expect = 3e-12
 Identities = 36/89 (40%), Positives = 49/89 (55%)

Query: 81  LDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSI 140
           L L   G  G IP+ I  L  L  I+L  N + G IP  +G +T L+VL   +N  +GSI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 141 PPEVCQLSSIEELFLYSNHLNGSLPPFLG 169
           P  + QL+S+  L L  N L+G +P  LG
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 69.5 bits (170), Expect = 3e-12
 Identities = 46/155 (29%), Positives = 66/155 (42%), Gaps = 29/155 (18%)

Query: 3   EEADALLKWKASLQSHNQSLLPS---WTNASTNVSSKISPCA-----WYGISC---NDAG 51
           EE  AL   K+SL       LP    W            PC      W G  C   +  G
Sbjct: 372 EEVSALQTLKSSLG------LPLRFGWNG---------DPCVPQQHPWSGADCQFDSTKG 416

Query: 52  R--VTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDS 109
           +  +  + L N GL G + +   S    L  ++LS N   G IP  +G++T L  + L  
Sbjct: 417 KWFIDGLGLDNQGLRGFIPN-DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSY 475

Query: 110 NQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEV 144
           N  +G IP  +G LT L++L+   N L G +P  +
Sbjct: 476 NSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 65.3 bits (160), Expect = 1e-11
 Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 5/87 (5%)

Query: 631 CIGNGGHGSVYRAE-LPSGEVVAVKKFH-SSIPCDQIADQKEFLTEVQALTEIRHRNIVK 688
            IG G  G VY+   L +G+ VA+K+     I  + +   K  + E+  L  ++H NIVK
Sbjct: 7   LIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEAL---KSIMQEIDLLKNLKHPNIVK 63

Query: 689 FYGFCSHAQHSFLVYEFLERGSLAAIL 715
           + G    +   +++ E+ E GSL  I+
Sbjct: 64  YIGSIETSDSLYIILEYAENGSLRQII 90

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

 Score = 65.2 bits (159), Expect = 2e-11
 Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 9/90 (10%)

Query: 632 IGNGGHGSVYRAELPSG------EVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRN 685
           +G G  G V+  E          E+VAVK    +   D    +K+F  E + LT  +H N
Sbjct: 13  LGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDA---RKDFEREAELLTNFQHEN 69

Query: 686 IVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
           IVKFYG C+      +V+E++E G L   L
Sbjct: 70  IVKFYGVCTEGDPPIMVFEYMEHGDLNKFL 99

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 65.6 bits (160), Expect = 5e-11
 Identities = 46/156 (29%), Positives = 71/156 (45%), Gaps = 8/156 (5%)

Query: 434 LGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLI 493
           LGL N      +P ++ KL  L  ++ S N   G IP  + S+ SLE L+LS+N+ +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 494 PNCFEGMHGLSIIDISDNQLQGPVPNSTAFR--NAPVEALEGNKELCGGVKGMQPCKVFS 551
           P     +  L I++++ N L G VP +   R  +        N  LC G+ G++ C    
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLC-GIPGLRAC---G 538

Query: 552 SHKQNSGGKWFAVVFPVLGALFVSMALIAIFILRKQ 587
            H   S G    + F V  A    +     +  R+Q
Sbjct: 539 PHL--SVGAKIGIAFGVSVAFLFLVICAMCWWKRRQ 572

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 65.6 bits (160), Expect = 5e-11
 Identities = 34/89 (38%), Positives = 54/89 (60%)

Query: 105 ISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSL 164
           + LD+  L G IP ++  L HL+ ++   N + G+IPP +  ++S+E L L  N  NGS+
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 165 PPFLGNLSNIVRLYINNNSLSGSILTNIG 193
           P  LG L+++  L +N NSLSG +   +G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 65.2 bits (159), Expect = 6e-11
 Identities = 36/89 (40%), Positives = 47/89 (52%)

Query: 361 ALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNS 420
            L L    + G IP ++ KL  L  + L GN + G +P  +GS+  LE LD S N FN S
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 421 VPESLGNLLKLHYLGLSNNQFVLELPKEL 449
           +PESLG L  L  L L+ N     +P  L
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 62.6 bits (153), Expect = 8e-11
 Identities = 26/88 (29%), Positives = 50/88 (56%), Gaps = 5/88 (5%)

Query: 631 CIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKF 689
            +G G  GSVY A    +GE++AVK     +  D   + +    E++ L+ ++H NIV++
Sbjct: 7   LLGRGSFGSVYLALDKDTGELMAVKSVE--LSGDSEEELEALEREIRILSSLQHPNIVRY 64

Query: 690 YGFC-SHAQHSFLVY-EFLERGSLAAIL 715
           YG      +++  ++ E++  GSL+++L
Sbjct: 65  YGSERDEEKNTLNIFLEYVSGGSLSSLL 92

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 63.7 bits (155), Expect = 2e-10
 Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 3/95 (3%)

Query: 340 VSMNN--ITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRL 397
           + ++N  + G IP +I  +  LQ+++LS N I G IP  LG + SL  L L  N   G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 398 PTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLH 432
           P  +G L  L  L+ + N  +  VP +LG  L LH
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRL-LH 516

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 62.3 bits (151), Expect = 3e-10
 Identities = 83/285 (29%), Positives = 121/285 (42%), Gaps = 17/285 (5%)

Query: 147 LSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKF-LFELDLSF 205
           L  +  L L  N L  ++   L  L+N+  L ++NN+++  I   IG LK  L ELDLS 
Sbjct: 92  LLPLPSLDLNLNRLRSNISE-LLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSD 149

Query: 206 -----LPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRG 260
                LP  + NL NLK+L L  N LS         S L  L LSGN  +  LP  I   
Sbjct: 150 NKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISD-LPPEIELL 208

Query: 261 GLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNN 320
             LE   +S N     +  SL N  +L  + L+ N L  ++ E++G   NL  +DLS N 
Sbjct: 209 SALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQ 266

Query: 321 FYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKL 380
                 S+ G    L  L++S N+++  +P        L  L   L +++  +     KL
Sbjct: 267 --ISSISSLGSLTNLRELDLSGNSLSNALPLIA----LLLLLLELLLNLLLTLKALELKL 320

Query: 381 NSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESL 425
           NS+       +      P  +  L  L  L    N  + S     
Sbjct: 321 NSILLNNNILSNGETSSPEALSILESLNNLWTLDNALDESNLNRY 365

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 60.6 bits (147), Expect = 2e-09
 Identities = 36/102 (35%), Positives = 52/102 (50%), Gaps = 23/102 (22%)

Query: 205 FLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLE 264
           F+P  +  L +L+S+ L  N + G+IPPS G       +++                 LE
Sbjct: 433 FIPNDISKLRHLQSINLSGNSIRGNIPPSLG-------SITS----------------LE 469

Query: 265 AFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALG 306
              +S N F G+IPESL   TSL  + LNGN+L+G +  ALG
Sbjct: 470 VLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 59.6 bits (144), Expect = 3e-09
 Identities = 61/191 (31%), Positives = 89/191 (46%), Gaps = 24/191 (12%)

Query: 67  LRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHL 126
           +          L  LDLS N    ++PS + NL  L  + L  N LS  +P  +  L++L
Sbjct: 131 IPPLIGLLKSNLKELDLSDNKI-ESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNL 188

Query: 127 KVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSG 186
             L    N++   +PPE+  LS++EEL L +N +   L   L NL N+  L ++NN    
Sbjct: 189 NNLDLSGNKI-SDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNK--- 243

Query: 187 SILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSG 246
                           L  LP S+GNL+NL++L L +N +S SI      + L  L LSG
Sbjct: 244 ----------------LEDLPESIGNLSNLETLDLSNNQIS-SISSLGSLTNLRELDLSG 286

Query: 247 NHFTGYLPHNI 257
           N  +  LP   
Sbjct: 287 NSLSNALPLIA 297

Length = 394

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 57.1 bits (138), Expect = 5e-09
 Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 3/84 (3%)

Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG 691
           IG G  G VY+  L     VAVK   S++P D    +++FL E + L +  H NIVK  G
Sbjct: 3   IGKGNFGDVYKGVLKGNTEVAVKTCRSTLPPD---LKRKFLQEAEILKQYDHPNIVKLIG 59

Query: 692 FCSHAQHSFLVYEFLERGSLAAIL 715
            C   Q  ++V E +  GSL   L
Sbjct: 60  VCVQKQPIYIVMELVPGGSLLTFL 83

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 57.6 bits (140), Expect = 5e-09
 Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 10/88 (11%)

Query: 632 IGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKE--FLTEVQALTEIRHRNIVK 688
           IG G  G VY+A +  +G+ VA+KK         +  Q +   + E+  + + +H NIV 
Sbjct: 27  IGEGASGEVYKATDRATGKEVAIKKMR-------LRKQNKELIINEILIMKDCKHPNIVD 79

Query: 689 FYGFCSHAQHSFLVYEFLERGSLAAILS 716
           +Y         ++V E+++ GSL  I++
Sbjct: 80  YYDSYLVGDELWVVMEYMDGGSLTDIIT 107

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

 Score = 57.4 bits (139), Expect = 6e-09
 Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 11/104 (10%)

Query: 618 EIVRETNDFDAEYCIGNGGHGSVYR---AELPSGEV---VAVKKFHSSIPCDQIADQKEF 671
           E+ RE      E  +G G  G VY      +  GE    VA+K  +       + ++ EF
Sbjct: 2   ELPREKITLIRE--LGQGSFGMVYEGLAKGVVKGEPETRVAIKTVN---ENASMRERIEF 56

Query: 672 LTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
           L E   + E    ++V+  G  S  Q + +V E + +G L + L
Sbjct: 57  LNEASVMKEFNCHHVVRLLGVVSTGQPTLVVMELMAKGDLKSYL 100

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR and IGF-1R, which share 84% sequence identity in their kinase domains, display physiologically distinct yet overlapping functions in cell growth, differentiation, and metabolism. InsR activation leads primarily to metabolic effects while IGF-1R activation stimulates mitogenic pathways. In cells expressing both receptors, InsR/IGF-1R hybrids are found together with classical receptors. Both receptors can interact with common adaptor molecules such as IRS-1 and IRS-2. Length = 277

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 58.3 bits (141), Expect = 9e-09
 Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 18/104 (17%)

Query: 136 LDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNL 195
           L G IP ++ +L  ++ + L  N + G++PP LG+++++  L ++ NS +GSI       
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI------- 482

Query: 196 KFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSML 239
                      P S+G LT+L+ L L  N LSG +P + G  +L
Sbjct: 483 -----------PESLGQLTSLRILNLNGNSLSGRVPAALGGRLL 515

Length = 623

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 56.3 bits (136), Expect = 1e-08
 Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 6/88 (6%)

Query: 624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRH 683
            +      IG G  G V   +   G+ VAVK     +  D  A Q  FL E   +T +RH
Sbjct: 6   KELKLGATIGKGEFGDVMLGDY-RGQKVAVKC----LKDDSTAAQA-FLAEASVMTTLRH 59

Query: 684 RNIVKFYGFCSHAQHSFLVYEFLERGSL 711
            N+V+  G        ++V E++ +GSL
Sbjct: 60  PNLVQLLGVVLQGNPLYIVTEYMAKGSL 87

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 50.8 bits (122), Expect = 1e-08
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 6/48 (12%)

Query: 1  SNEEADALLKWKASLQSHNQSLLPSWTNASTNVSSKISPCAWYGISCN 48
           N++ DALL +K+SL       L SW  +S++      PC+W G++C+
Sbjct: 1  LNDDRDALLAFKSSLNGDPSGALSSWNPSSSD------PCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 55.4 bits (134), Expect = 3e-08
 Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 3/77 (3%)

Query: 632 IGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
           IG G +G VY+A +  +GE+VA+KK    +  +     K  L E++ L E+ H NI+K  
Sbjct: 7   IGEGTYGVVYKARDKLTGEIVAIKKI--KLRFESEGIPKTALREIKLLKELNHPNIIKLL 64

Query: 691 GFCSHAQHSFLVYEFLE 707
               H    +LV+EF++
Sbjct: 65  DVFRHKGDLYLVFEFMD 81

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score = 55.0 bits (133), Expect = 4e-08
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 4/85 (4%)

Query: 632 IGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
           IG G HG V++A +  +GE VA+KK         I +Q   L E++AL   +H  +VK  
Sbjct: 8   IGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQ--ALREIKALQACQHPYVVKLL 65

Query: 691 GFCSHAQHSFLVYEFLERGSLAAIL 715
               H     LV E++    L+ +L
Sbjct: 66  DVFPHGSGFVLVMEYMPS-DLSEVL 89

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 54.7 bits (132), Expect = 4e-08
 Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 11/89 (12%)

Query: 632 IGNGGHGSVYRA-ELPSGEVVAVK--KFHSSIPC--DQIADQKEFLTEVQALTEIRHRNI 686
           IG G  G VY A  L +GE++AVK  +   + P    +IAD      E++ L  ++H N+
Sbjct: 8   IGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIAD------EMKVLELLKHPNL 61

Query: 687 VKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
           VK+YG   H +  ++  E+   G+L  +L
Sbjct: 62  VKYYGVEVHREKVYIFMEYCSGGTLEELL 90

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

 Score = 54.3 bits (131), Expect = 6e-08
 Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 6/87 (6%)

Query: 632 IGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQI-ADQKEFLTEVQALTEIRHRNIVKF 689
           IG G    VY A  LP+ E VA+K+    I  ++      E   EVQA+++  H N+VK+
Sbjct: 9   IGVGATAVVYAAICLPNNEKVAIKR----IDLEKCQTSVDELRKEVQAMSQCNHPNVVKY 64

Query: 690 YGFCSHAQHSFLVYEFLERGSLAAILS 716
           Y         +LV  +L  GSL  I+ 
Sbjct: 65  YTSFVVGDELWLVMPYLSGGSLLDIMK 91

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 54.1 bits (131), Expect = 7e-08
 Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 6/94 (6%)

Query: 624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR 682
           +D +    +G G  G VY+    P+G++ A+KK H          +K+ L E++ L    
Sbjct: 1   SDLERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVD---GDEEFRKQLLRELKTLRSCE 57

Query: 683 HRNIVKFYG-FCSHAQHSFLVYEFLERGSLAAIL 715
              +VK YG F    + S +V E+++ GSLA +L
Sbjct: 58  SPYVVKCYGAFYKEGEIS-IVLEYMDGGSLADLL 90

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 10/86 (11%)

Query: 632 IGNGGHGSVYRAEL--PSGEV--VAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIV 687
           +G+G  G V R E     G+V  VAVK   S    D + D   FL E   +  + H N++
Sbjct: 3   LGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDD---FLKEAAIMHSLDHENLI 59

Query: 688 KFYGFCSHAQHSF-LVYEFLERGSLA 712
           + YG      H   +V E    GSL 
Sbjct: 60  RLYGVV--LTHPLMMVTELAPLGSLL 83

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with androgen-independent prostate cancer progression. Tnk1 regulates TNFalpha signaling and may play an important role in cell death. Length = 257

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 7/93 (7%)

Query: 624 NDFDAEYCIGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR 682
             FD    +G G +GSVY+A    +G+VVA+K     +P +   D +E + E+  L +  
Sbjct: 3   EVFDILEKLGEGSYGSVYKAIHKETGQVVAIKV----VPVE--EDLQEIIKEISILKQCD 56

Query: 683 HRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
              IVK+YG        ++V E+   GS++ I+
Sbjct: 57  SPYIVKYYGSYFKNTDLWIVMEYCGAGSVSDIM 89

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 4/95 (4%)

Query: 621 RETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTE 680
           R   +F  E  +G+G  G V+     +   VA+K     +  D +  Q++F  EVQAL  
Sbjct: 3   RPREEFTLERKLGSGYFGEVWEGLWKNRVRVAIK----ILKSDDLLKQQDFQKEVQALKR 58

Query: 681 IRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
           +RH++++  +  CS  +  +++ E +E+GSL A L
Sbjct: 59  LRHKHLISLFAVCSVGEPVYIITELMEKGSLLAFL 93

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 30/89 (33%), Positives = 50/89 (56%), Gaps = 9/89 (10%)

Query: 632 IGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIAD-QKEFLTEVQALTEIRH---RNI 686
           IG G +G+VYR   +P+G VVA+K  +   P D ++D Q+    EV  L+++R     NI
Sbjct: 9   IGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQR----EVALLSQLRQSQPPNI 64

Query: 687 VKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
            K+YG        +++ E+ E GS+  ++
Sbjct: 65  TKYYGSYLKGPRLWIIMEYAEGGSVRTLM 93

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of centrin, and phosphorylates substrates in a Cdc31p-dependent manner. Length = 277

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 52.7 bits (127), Expect = 3e-07
 Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 3/78 (3%)

Query: 632 IGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
           +G G +G V +     +GE+VA+KKF  S   D+   +K  L EV+ L ++RH NIV   
Sbjct: 9   VGEGAYGVVLKCRNKATGEIVAIKKFKES-EDDEDV-KKTALREVKVLRQLRHENIVNLK 66

Query: 691 GFCSHAQHSFLVYEFLER 708
                    +LV+E++ER
Sbjct: 67  EAFRRKGRLYLVFEYVER 84

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 52.1 bits (126), Expect = 3e-07
 Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 3/79 (3%)

Query: 631 CIGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKF 689
            +G G +G VY+A +  +GE+VA+KK       + I      L E+  L E++H NIVK 
Sbjct: 6   KLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGI--PSTALREISLLKELKHPNIVKL 63

Query: 690 YGFCSHAQHSFLVYEFLER 708
                  +  +LV+E+ + 
Sbjct: 64  LDVIHTERKLYLVFEYCDM 82

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 5/86 (5%)

Query: 632 IGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
           IG+G +G VY+A ++ +GE+VA+K     I  +   D +    E+  L E RH NIV ++
Sbjct: 11  IGSGTYGDVYKARDIATGELVAIK----VIKLEPGDDFEIIQQEISMLKECRHPNIVAYF 66

Query: 691 GFCSHAQHSFLVYEFLERGSLAAILS 716
           G        ++V E+   GSL  I  
Sbjct: 67  GSYLRRDKLWIVMEYCGGGSLQDIYQ 92

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K1, also called haematopoietic progenitor kinase 1 (HPK1), is a hematopoietic-specific STK involved in many cellular signaling cascades including MAPK, antigen receptor, apoptosis, growth factor, and cytokine signaling. It participates in the regulation of T cell receptor signaling and T cell-mediated immune responses. MAP4K2 was referred to as germinal center (GC) kinase because of its preferred location in GC B cells. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. It is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). Length = 262

>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

 Score = 51.2 bits (122), Expect = 7e-07
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 632 IGNGGHGSVYRAEL----PSGE--VVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRN 685
           +G G  G V+ AE     P+ +  +VAVK          +A +K+F  E + LT ++H +
Sbjct: 13  LGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDP----TLAARKDFQREAELLTNLQHEH 68

Query: 686 IVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
           IVKFYG C       +V+E+++ G L   L
Sbjct: 69  IVKFYGVCGDGDPLIMVFEYMKHGDLNKFL 98

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some non-neural tissues including the developing heart. NT3/TrkC signaling plays an important role in the innervation of the cardiac conducting system and the development of smooth muscle cells. Mice deficient with NT3 and TrkC have multiple heart defects. NT3/TrkC signaling is also critical for the development and maintenance of enteric neurons that are important for the control of gut peristalsis. Length = 291

>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

 Score = 51.0 bits (123), Expect = 9e-07
 Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 13/83 (15%)

Query: 631 CIGNGGHGSVYRA-ELPSGEVVAVK----KFHSSIPCDQIADQKEFLTEVQALTEI-RHR 684
            +G+G  GSVY A    +GE+VA+K    KF+S   C         L EV++L ++  H 
Sbjct: 6   QLGDGTFGSVYLARNKETGELVAIKKMKKKFYSWEECMN-------LREVKSLRKLNEHP 58

Query: 685 NIVKFYGFCSHAQHSFLVYEFLE 707
           NIVK           + V+E++E
Sbjct: 59  NIVKLKEVFRENDELYFVFEYME 81

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 50.9 bits (120), Expect = 1e-06
 Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 4/86 (4%)

Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRH-RNIVKFY 690
           +G G  G VY A     ++VA+K     +   +  + + FL E+Q L  + H  NIVK Y
Sbjct: 8   LGEGSFGEVYLARDR--KLVALKVLAKKLE-SKSKEVERFLREIQILASLNHPPNIVKLY 64

Query: 691 GFCSHAQHSFLVYEFLERGSLAAILS 716
            F       +LV E+++ GSL  +L 
Sbjct: 65  DFFQDEGSLYLVMEYVDGGSLEDLLK 90

Length = 384

>gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

 Score = 50.4 bits (120), Expect = 1e-06
 Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 632 IGNGGHGSVYRAE----LPSGE--VVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRN 685
           +G G  G V+ AE    LP  +  +VAVK    +      + +++F  E + LT ++H++
Sbjct: 13  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASE----SARQDFQREAELLTVLQHQH 68

Query: 686 IVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
           IV+FYG C+  +   +V+E++  G L   L
Sbjct: 69  IVRFYGVCTEGRPLLMVFEYMRHGDLNRFL 98

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory and sympathetic neurons of the peripheral nervous system, and in basal forebrain cholinergic neurons of the central nervous system. It is critical for neuronal growth, differentiation and survival. Alternative TrkA splicing has been implicated as a pivotal regulator of neuroblastoma (NB) behavior. Normal TrkA expression is associated with better NB prognosis, while the hypoxia-regulated TrkAIII splice variant promotes NB pathogenesis and progression. Aberrant TrkA expression has also been demonstrated in non-neural tumors including prostate, breast, lung, and pancreatic cancers. Length = 280

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 4/86 (4%)

Query: 632 IGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
           +G G  G V +    P+G+++AVK     I     A QK+ L E+  L +     IV FY
Sbjct: 9   LGAGNSGVVSKVLHRPTGKIMAVKTIRLEI---NEAIQKQILRELDILHKCNSPYIVGFY 65

Query: 691 GFCSHAQHSFLVYEFLERGSLAAILS 716
           G   +     +  E+++ GSL  IL 
Sbjct: 66  GAFYNNGDISICMEYMDGGSLDKILK 91

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.0 bits (122), Expect = 2e-06
 Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 1/110 (0%)

Query: 242 LTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNI 301
           L L      G++P++I +   L++  +S N  +G IP SL + TSL  + L+ N+  G+I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 302 SEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGT-LNVSMNNITGGIP 350
            E+LG   +L  ++L+ N+  G + +  G         N + N    GIP
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532

Length = 623

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 10/87 (11%)

Query: 632 IGNGGHGSVYRAELP-----SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNI 686
           +G G  G V           +GE VAVK  + S      +D   F  E++ L  + H NI
Sbjct: 12  LGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSD---FEREIEILRTLDHENI 68

Query: 687 VKFYGFC--SHAQHSFLVYEFLERGSL 711
           VK+ G C     +   L+ E+L  GSL
Sbjct: 69  VKYKGVCEKPGGRSLRLIMEYLPSGSL 95

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 7/96 (7%)

Query: 625 DFDAEYCIGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLT-EVQALTEIR 682
           D++    IG G  G+V +      G+++  K+       ++   +K+ L  EV  L E++
Sbjct: 1   DYEVLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEK---EKQQLVSEVNILRELK 57

Query: 683 HRNIVKFYG-FCSHAQHS-FLVYEFLERGSLAAILS 716
           H NIV++Y      +  + ++V E+ E G LA ++ 
Sbjct: 58  HPNIVRYYDRIIDRSNQTLYIVMEYCEGGDLAQLIQ 93

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

 Score = 49.2 bits (117), Expect = 2e-06
 Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 8/84 (9%)

Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG 691
           IG G  G+V + E  +G+ VAVK    +I CD  A  + FL E   +T++ H+N+V+  G
Sbjct: 14  IGEGEFGAVLQGEY-TGQKVAVK----NIKCDVTA--QAFLEETAVMTKLHHKNLVRLLG 66

Query: 692 FCSHAQHSFLVYEFLERGSLAAIL 715
              H    ++V E + +G+L   L
Sbjct: 67  VILH-NGLYIVMELMSKGNLVNFL 89

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254

>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 7/88 (7%)

Query: 632 IGNGGHGSVYRA--ELPSGEV--VAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIV 687
           IG G  G V R   +LP  +   VA+K   +     Q  D   FLTE   + +  H NI+
Sbjct: 12  IGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLD---FLTEASIMGQFDHPNII 68

Query: 688 KFYGFCSHAQHSFLVYEFLERGSLAAIL 715
           +  G  + ++   ++ E++E GSL   L
Sbjct: 69  RLEGVVTKSRPVMIITEYMENGSLDKFL 96

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 48.6 bits (117), Expect = 3e-06
 Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 3/92 (3%)

Query: 625 DFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRH 683
            ++    IG G  G VY       G++  +K+    +      ++++ L EV+ L ++ H
Sbjct: 1   KYEIIKQIGKGSFGKVYLVRRKSDGKLYVLKE--IDLSNMSEKEREDALNEVKILKKLNH 58

Query: 684 RNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
            NI+K+Y          +V E+ + G L+  +
Sbjct: 59  PNIIKYYESFEEKGKLCIVMEYADGGDLSQKI 90

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

 Score = 48.7 bits (116), Expect = 4e-06
 Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 6/91 (6%)

Query: 632 IGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLT-----EVQALTEIRHRN 685
           IG+G  GSVY      SGE++AVK+           D+K  +      E+  L E++H N
Sbjct: 8   IGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHEN 67

Query: 686 IVKFYGFCSHAQHSFLVYEFLERGSLAAILS 716
           IV++ G    A H  +  E++  GS+AA+L+
Sbjct: 68  IVQYLGSSLDADHLNIFLEYVPGGSVAALLN 98

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Byr2 is regulated by Ras1. It responds to pheromone signaling and controls mating through the MAPK pathway. Budding yeast Ste11 functions in MAPK cascades that regulate mating, high osmolarity glycerol, and filamentous growth responses. Length = 267

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 48.6 bits (116), Expect = 4e-06
 Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 4/87 (4%)

Query: 632 IGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQ--KEFLTEVQALTEIRHRNIVK 688
           +G+G  GSVY    L  G+  AVK+  S     Q   +  K+   E+  L++++H NIV+
Sbjct: 8   LGSGSFGSVYEGLNLDDGDFFAVKEV-SLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQ 66

Query: 689 FYGFCSHAQHSFLVYEFLERGSLAAIL 715
           + G      + ++  E +  GSLA +L
Sbjct: 67  YLGTEREEDNLYIFLELVPGGSLAKLL 93

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

 Score = 48.4 bits (115), Expect = 5e-06
 Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 4/88 (4%)

Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLT---EVQALTEIRHRNIVK 688
           +G G +G+VY      G+++AVK+       + +A +KE+     EV  L  ++H NIV+
Sbjct: 8   LGKGAYGTVYCGLTNQGQLIAVKQVELD-TSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQ 66

Query: 689 FYGFCSHAQHSFLVYEFLERGSLAAILS 716
           + G C       +  EF+  GS+++IL+
Sbjct: 67  YLGTCLDDNTISIFMEFVPGGSISSILN 94

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Length = 265

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 43.7 bits (104), Expect = 7e-06
 Identities = 21/60 (35%), Positives = 30/60 (50%)

Query: 454 QLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQL 513
            L  LD S+N            L +L+ L+LS NNL+ + P  F G+  L  +D+S N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer

 Score = 47.7 bits (113), Expect = 7e-06
 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)

Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG 691
           +G G  G V++  L     VAVK     +P +    + +FL+E + L +  H NIVK  G
Sbjct: 3   LGKGNFGEVFKGTLKDKTPVAVKTCKEDLPQEL---KIKFLSEARILKQYDHPNIVKLIG 59

Query: 692 FCSHAQHSFLVYEFLERGSLAAIL 715
            C+  Q  ++V E +  G   + L
Sbjct: 60  VCTQRQPIYIVMELVPGGDFLSFL 83

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250

>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 47.8 bits (114), Expect = 9e-06
 Identities = 34/90 (37%), Positives = 46/90 (51%), Gaps = 17/90 (18%)

Query: 632 IGNGGHGSVYRAEL--------PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRH 683
           +G G  GSV   EL         +GEVVAVKK   S         ++F  E++ L  ++H
Sbjct: 12  LGKGNFGSV---ELCRYDPLQDNTGEVVAVKKLQHSTA----EHLRDFEREIEILKSLQH 64

Query: 684 RNIVKFYGFC-SHAQHSF-LVYEFLERGSL 711
            NIVK+ G C S  + +  LV E+L  GSL
Sbjct: 65  DNIVKYKGVCYSAGRRNLRLVMEYLPYGSL 94

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 284

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 46/181 (25%), Positives = 65/181 (35%), Gaps = 44/181 (24%)

Query: 357 SQLQALDLSLNHIVGE----IPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDF 412
             LQ L L  N +  E    +   L    SL +L L  N+ TGR+P  + SL        
Sbjct: 23  LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNE-TGRIPRGLQSL-------- 73

Query: 413 SANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQ---LSELDASHNLFGGEI 469
                     + L     L  L LS+N    +    LE L++   L EL  ++N  G   
Sbjct: 74  ---------LQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRG 124

Query: 470 -PFQICSLKS----LEKLNLSHNNLSG---------LIPNCFEGMHGLSIIDISDNQLQG 515
                  LK     LEKL L  N L G         L  N       L  +++++N +  
Sbjct: 125 LRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANR-----DLKELNLANNGIGD 179

Query: 516 P 516
            
Sbjct: 180 A 180

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|133174 cd05042, PTKc_Aatyk, Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 31/87 (35%), Positives = 39/87 (44%), Gaps = 6/87 (6%)

Query: 632 IGNGGHGSVYRAELPSGEVVA---VKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVK 688
           IGNG  G V   E   G   A   VK+  +S   D+   Q  FL EVQ   E+ H N+++
Sbjct: 3   IGNGWFGKVLLGEAHRGMSKARVVVKELRASATPDE---QLLFLQEVQPYRELNHPNVLQ 59

Query: 689 FYGFCSHAQHSFLVYEFLERGSLAAIL 715
             G C  +    LV EF   G L   L
Sbjct: 60  CLGQCIESIPYLLVLEFCPLGDLKNYL 86

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kinases based on overall sequence similarity and the phylogenetic tree. However, analysis of catalytic residues suggests that Aatyk proteins may be multispecific kinases, functioning also as serine/threonine kinases. They are involved in neural differentiation, nerve growth factor (NGF) signaling, apoptosis, and spermatogenesis. Length = 269

>gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

 Score = 47.0 bits (111), Expect = 2e-05
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 632 IGNGGHGSVYRAEL----PSGE--VVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRN 685
           +G G  G V+ AE     P  +  +VAVK    +   D    +K+F  E + LT ++H +
Sbjct: 13  LGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDA--SDNA--RKDFHREAELLTNLQHEH 68

Query: 686 IVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
           IVKFYG C       +V+E+++ G L   L
Sbjct: 69  IVKFYGVCVEGDPLIMVFEYMKHGDLNKFL 98

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly expressed in the nervous system and in some non-neural tissues. It plays important roles in cell proliferation, differentiation, and survival. BDNF/Trk signaling plays a key role in regulating activity-dependent synaptic plasticity. TrkB also contributes to protection against gp120-induced neuronal cell death. TrkB overexpression is associated with poor prognosis in neuroblastoma (NB) and other human cancers. It acts as a suppressor of anoikis (detachment-induced apoptosis) and contributes to tumor metastasis. Length = 288

>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 9/86 (10%)

Query: 632 IGNGGHGSVYRAEL--PSGE----VVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRN 685
           +G G  G VY+ EL  P+       VA+K    +        Q+EF  E + +++++H N
Sbjct: 13  LGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKV---QQEFRQEAELMSDLQHPN 69

Query: 686 IVKFYGFCSHAQHSFLVYEFLERGSL 711
           IV   G C+  Q + +++E+L  G L
Sbjct: 70  IVCLLGVCTKEQPTCMLFEYLAHGDL 95

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 5/80 (6%)

Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG 691
           +G+G  G V+  +      VA+K        +    + +F+ E + + ++ H N+V+ YG
Sbjct: 12  LGSGQFGVVHLGKWRGKIDVAIKMIR-----EGAMSEDDFIEEAKVMMKLSHPNLVQLYG 66

Query: 692 FCSHAQHSFLVYEFLERGSL 711
            C+  +  F+V E++  G L
Sbjct: 67  VCTKQRPIFIVTEYMANGCL 86

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|173645 cd05084, PTKc_Fes, Catalytic domain of the Protein Tyrosine Kinase, Fes

 Score = 46.5 bits (110), Expect = 2e-05
 Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 4/85 (4%)

Query: 632 IGNGGHGSVYRAELPSGEV-VAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
           IG G  G V+   L +    VAVK    ++P D  A   +FL E + L +  H NIV+  
Sbjct: 3   IGRGNFGEVFSGRLRADNTPVAVKSCRETLPPDLKA---KFLQEARILKQYSHPNIVRLI 59

Query: 691 GFCSHAQHSFLVYEFLERGSLAAIL 715
           G C+  Q  ++V E ++ G     L
Sbjct: 60  GVCTQKQPIYIVMELVQGGDFLTFL 84

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells. It plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. A recent study implicates Fes kinase as a tumor suppressor in colorectal cancer. Length = 252

>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 12/86 (13%)

Query: 632 IGNGGHGSV----YRAELPSGEV--VAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRN 685
           +G+G  GSV    Y   + SG+   VAVK           A +KEFL E   + ++ H  
Sbjct: 3   LGHGNFGSVVKGVYL--MKSGKEVEVAVKTLKQE---HIAAGKKEFLREASVMAQLDHPC 57

Query: 686 IVKFYGFCSHAQHSFLVYEFLERGSL 711
           IV+  G C   +   LV E    G L
Sbjct: 58  IVRLIGVCK-GEPLMLVMELAPLGPL 82

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. Syk is important in B-cell receptor (BCR) signaling, while Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Syk also plays a central role in Fc receptor-mediated phagocytosis in the adaptive immune system. Shark is exclusively expressed in ectodermally derived epithelia, and is localized preferentially to the apical surface of the epithelial cells, it may play a role in a signaling pathway for epithelial cell polarity. Length = 257

>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 46.0 bits (109), Expect = 3e-05
 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 6/91 (6%)

Query: 622 ETNDFDAEYCIGNGGHGSVYRAELPS-GEVVAVKKFHSSIPCDQIADQKEFLTEVQALTE 680
           E  D   ++ +G G +G VY          VAVK        +   + +EFL E   + E
Sbjct: 4   ERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKEAAVMKE 58

Query: 681 IRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
           I+H N+V+  G C+     +++ EF+  G+L
Sbjct: 59  IKHPNLVQLLGVCTREPPFYIITEFMTYGNL 89

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263

>gnl|CDD|173740 cd07842, STKc_CDK8_like, Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

 Score = 46.1 bits (110), Expect = 3e-05
 Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 22/95 (23%)

Query: 626 FDAEYCIGNGGHGSVYRA---ELPSGEVVAVKKFHSSIPCDQIADQKEFLT--------E 674
           ++ E CIG G +G VY+A       G+  A+KKF            KE  T        E
Sbjct: 2   YEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGD---------KEQYTGISQSACRE 52

Query: 675 VQALTEIRHRNIVKFYG-FCSHAQHS-FLVYEFLE 707
           +  L E++H N+V     F  HA  S +L++++ E
Sbjct: 53  IALLRELKHENVVSLVEVFLEHADKSVYLLFDYAE 87

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II (RNAP II)-dependent transcription. CDC2L6 also associates with Mediator in complexes lacking CDK8. In VP16-dependent transcriptional activation, CDK8 and CDC2L6 exerts opposing effects by positive and negative regulation, respectively, in similar conditions. Length = 316

>gnl|CDD|173646 cd05087, PTKc_Aatyk1_Aatyk3, Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

 Score = 45.7 bits (108), Expect = 4e-05
 Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 6/87 (6%)

Query: 632 IGNGGHGSVYRAELPSG---EVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVK 688
           IGNG  G V   E+ SG     V VK+   S     + +Q +FL E Q    ++H N+++
Sbjct: 3   IGNGWFGKVILGEVNSGYTPAQVVVKELRVSA---SVQEQMKFLEEAQPYRSLQHSNLLQ 59

Query: 689 FYGFCSHAQHSFLVYEFLERGSLAAIL 715
             G C+      LV EF   G L   L
Sbjct: 60  CLGQCTEVTPYLLVMEFCPLGDLKGYL 86

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells. Aatyk1 has been implicated in neural differentiation, and is a regulator of the Na-K-2Cl cotransporter, a membrane protein involved in cell proliferation and survival, epithelial transport, and blood pressure control. The function of Aatyk3 is still unknown. Length = 269

>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

 Score = 45.3 bits (107), Expect = 4e-05
 Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 5/84 (5%)

Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG 691
           IG+G  G V+         VA+K        +    +++F+ E Q + ++ H  +V+ YG
Sbjct: 12  IGSGQFGLVWLGYWLEKRKVAIKTIR-----EGAMSEEDFIEEAQVMMKLSHPKLVQLYG 66

Query: 692 FCSHAQHSFLVYEFLERGSLAAIL 715
            C+      LV+EF+E G L+  L
Sbjct: 67  VCTERSPICLVFEFMEHGCLSDYL 90

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256

>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

 Score = 45.4 bits (108), Expect = 5e-05
 Identities = 36/101 (35%), Positives = 50/101 (49%), Gaps = 10/101 (9%)

Query: 620 VRETNDFDAEYCIGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEF--LTEVQ 676
            R   +F+    IG G +G VYRA +  SGE+VA+KK    +  D   D      L E+ 
Sbjct: 3   CRSVTEFEKLNRIGEGTYGIVYRARDTTSGEIVALKK----VRMDNERDGIPISSLREIT 58

Query: 677 ALTEIRHRNIVKFYGFC--SHAQHSFLVYEFLERGSLAAIL 715
            L  +RH NIV+        H    FLV E+ E+  LA++L
Sbjct: 59  LLLNLRHPNIVELKEVVVGKHLDSIFLVMEYCEQ-DLASLL 98

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing increases the transcription of c-RAF and the activation of the p42/p44 MAPK pathway, which leads to antiestrogen resistance. Patients who express low levels of CDK10 relapse early on tamoxifen. Length = 309

>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

 Score = 45.3 bits (108), Expect = 6e-05
 Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 26/104 (25%)

Query: 624 NDFDAEYCIGNGGHGSVYRA-ELPSGEVVAVKKF---HSSIPCDQIAD-QKEFLTEVQAL 678
             F    CIG G  G VY+A +  + +VVA+K      +    D+I D Q+    E+Q L
Sbjct: 1   ELFTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAE---DEIEDIQQ----EIQFL 53

Query: 679 TEIRHRNIVKFYGFCSHAQHSFL-------VYEFLERGSLAAIL 715
           ++ R   I K+YG       SFL       + E+   GS   +L
Sbjct: 54  SQCRSPYITKYYG-------SFLKGSKLWIIMEYCGGGSCLDLL 90

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 45.0 bits (107), Expect = 7e-05
 Identities = 60/231 (25%), Positives = 91/231 (39%), Gaps = 48/231 (20%)

Query: 287 LIRVRLNGNNLTGN----ISEALGLYPNLTFIDLSRNNFYGEISSNWG-------KCPKL 335
           L  +RL GN L       ++ AL   P+L  + LS  N  G I            K   L
Sbjct: 25  LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLS-LNETGRIPRGLQSLLQGLTKGCGL 83

Query: 336 GTLNVSMNNITGGIPREIGNMSQ---LQALDLSLNHIVGEIPKELGK-----LNSLTKLI 387
             L++S N +       + ++ +   LQ L L+ N +     + L K       +L KL+
Sbjct: 84  QELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLV 143

Query: 388 LRGNQLTGRLPTEIGSLI----ELEYLDFSANKFNNSVPESLGNLLK----LHYLGLSNN 439
           L  N+L G     +   +    +L+ L+ + N   ++   +L   LK    L  L L+NN
Sbjct: 144 LGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNN 203

Query: 440 QFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLS 490
                     E    L+E               + SLKSLE LNL  NNL+
Sbjct: 204 GL------TDEGASALAET--------------LASLKSLEVLNLGDNNLT 234

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

 Score = 44.7 bits (106), Expect = 7e-05
 Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 2/90 (2%)

Query: 623 TNDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI 681
             +F  E  IG G    VY+A  L  G VVA+KK       D  A Q   L E+  L ++
Sbjct: 1   LGNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQD-CLKEIDLLKQL 59

Query: 682 RHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
            H N++K+           +V E  + G L
Sbjct: 60  DHPNVIKYLASFIENNELNIVLELADAGDL 89

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may also be regulators of the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

 Score = 44.9 bits (107), Expect = 7e-05
 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 8/89 (8%)

Query: 632 IGNGGHGSVYRAELPS-GEVVAVKKFHSSIPCDQI---ADQKEFLTEVQALTEIRHRNIV 687
           I  G +G V+ A+  S G++ A+K     I    +       + LTE   L++ +   +V
Sbjct: 1   ISKGAYGRVFLAKKKSTGDIYAIKV----IKKADMIRKNQVDQVLTERDILSQAQSPYVV 56

Query: 688 KFYGFCSHAQHSFLVYEFLERGSLAAILS 716
           K Y      ++ +LV E+L  G LA++L 
Sbjct: 57  KLYYSFQGKKNLYLVMEYLPGGDLASLLE 85

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265

>gnl|CDD|173644 cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

 Score = 44.9 bits (106), Expect = 8e-05
 Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 5/71 (7%)

Query: 647 SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSF--LVYE 704
           +GE VAVK        + IAD K+   E++ L  + H NIVK+ G C+    +   L+ E
Sbjct: 32  TGEQVAVKSLKPESGGNHIADLKK---EIEILRNLYHENIVKYKGICTEDGGNGIKLIME 88

Query: 705 FLERGSLAAIL 715
           FL  GSL   L
Sbjct: 89  FLPSGSLKEYL 99

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak1 is widely expressed in many tissues. Many cytokines are dependent on Jak1 for signaling, including those that use the shared receptor subunits common gamma chain (IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6, IL-11, oncostatin M, G-CSF, and IFNs, among others). The many varied interactions of Jak1 and its ubiquitous expression suggest many biological roles. Jak1 is important in neurological development, as well as in lymphoid development and function. It also plays a role in the pathophysiology of cardiac hypertrophy and heart failure. A mutation in the ATP-binding site of Jak1 was identified in a human uterine leiomyosarcoma cell line, resulting in defective cytokine induction and antigen presentation, thus allowing the tumor to evade the immune system. Length = 284

>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

 Score = 44.7 bits (106), Expect = 9e-05
 Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 3/78 (3%)

Query: 632 IGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
           +G G +G V + +   +G++VA+KKF  S   D    +K  + E++ L ++RH N+V   
Sbjct: 9   VGEGSYGMVMKCKHKETGQIVAIKKFLESE--DDKMVKKIAMREIRMLKQLRHENLVNLI 66

Query: 691 GFCSHAQHSFLVYEFLER 708
                 +  +LV+EF++ 
Sbjct: 67  EVFRRKKRLYLVFEFVDH 84

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKIAMRE (NKIATRE in rat), by translocation is associated with mild mental retardation. It has been reported that CDKL3 is lost in leukemic cells having a chromosome arm 5q deletion, and may contribute to the transformed phenotype. Length = 286

>gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine Kinase, C-ros

 Score = 44.5 bits (105), Expect = 1e-04
 Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 10/91 (10%)

Query: 632 IGNGGHGSVYRAELP------SGEV-VAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHR 684
           +G+G  G VY           SG + VAVK            ++KEFL E   ++   H 
Sbjct: 3   LGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKG---ATDQEKKEFLKEAHLMSNFNHP 59

Query: 685 NIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
           NIVK  G C   +  +++ E +E G L + L
Sbjct: 60  NIVKLLGVCLLNEPQYIIMELMEGGDLLSYL 90

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male mice bearing inactive mutations of c-ros lack the initial segment of the epididymis and are infertile. The Drosophila protein, Sevenless, is required for the specification of the R7 photoreceptor cell during eye development. Length = 269

>gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 20/80 (25%), Positives = 42/80 (52%), Gaps = 5/80 (6%)

Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG 691
           +G+G  G V+  +  +   VA+K  +     ++     +F+ E + + ++ H  +V+ YG
Sbjct: 12  LGSGQFGVVHLGKWRAQIKVAIKAINEGAMSEE-----DFIEEAKVMMKLSHPKLVQLYG 66

Query: 692 FCSHAQHSFLVYEFLERGSL 711
            C+  +  ++V EF+E G L
Sbjct: 67  VCTQQKPLYIVTEFMENGCL 86

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. Instead of PH, Rlk contains an N-terminal cysteine-rich region. In addition to PH, Tec also contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Tec is more widely-expressed than other Tec subfamily kinases. It is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Rlk is expressed in T-cells and mast cell lines. Tec and Rlk are both key components of T-cell receptor (TCR) signaling. They are important in TCR-stimulated proliferation, IL-2 production and phopholipase C-gamma1 activation. Length = 256

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 44.1 bits (105), Expect = 1e-04
 Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 15/84 (17%)

Query: 632 IGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKE-----FLTEVQALTEIRHRN 685
           IG G +G VY+A    +GE+VA+KK           ++KE      + E++ L ++RH N
Sbjct: 7   IGEGTYGQVYKARNKKTGELVALKKIRME-------NEKEGFPITAIREIKLLQKLRHPN 59

Query: 686 IVKFYGFC-SHAQHS-FLVYEFLE 707
           IV+      S  + S ++V+E+++
Sbjct: 60  IVRLKEIVTSKGKGSIYMVFEYMD 83

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 29/81 (35%), Positives = 38/81 (46%), Gaps = 13/81 (16%)

Query: 632 IGNGGHGSVYRAE-LPSGEVVAVKKFH-----SSIPCDQIADQKEFLTEVQALTEIRHRN 685
           IG G +G VY+A    +GEVVA+KK         +P   I        E+  L E+ H N
Sbjct: 8   IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAI-------REISLLKELNHPN 60

Query: 686 IVKFYGFCSHAQHSFLVYEFL 706
           IVK           +LV+EFL
Sbjct: 61  IVKLLDVIHTENKLYLVFEFL 81

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. CDK2, together with CDK4, also regulates embryonic cell proliferation. Despite these important roles, mice deleted for the cdk2 gene are viable and normal except for being sterile. This may be due to compensation provided by CDK1 (also called Cdc2), which can also bind cyclin E and drive the G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 284

>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 15/83 (18%)

Query: 632 IGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKE-----FLTEVQALTEIRHRN 685
           IG G +G VY+A +  +GE+VA+KK    I  +    + E      + E+  L E+ H N
Sbjct: 7   IGEGTYGVVYKARDKLTGEIVALKK----IRLET---EDEGVPSTAIREISLLKELNHPN 59

Query: 686 IVKFYGFCSHAQHS-FLVYEFLE 707
           IV+      H+++  +LV+EFL+
Sbjct: 60  IVRLLDVV-HSENKLYLVFEFLD 81

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression while the CDK1/cyclin B complex is critical for G2 to M phase transition. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. Studies in knockout mice revealed that CDK1 can compensate for the loss of the cdk2 gene as it can also bind cyclin E and drive G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 283

>gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 9/98 (9%)

Query: 624 NDFDAEYCIGNGGHGSVYRAELP---SGE---VVAVKKFHSSIPCDQIADQKEFLTEVQA 677
           N+ +    IG G  G V++A  P     E   +VAVK        D    Q +F  E   
Sbjct: 5   NNIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADM---QADFQREAAL 61

Query: 678 LTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
           + E  H NIVK  G C+  +   L++E++  G L   L
Sbjct: 62  MAEFDHPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFL 99

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates Musk autophosphorylation and activation, leading to the clustering of acetylcholine receptors (AChRs). To date, there is no evidence to suggest that agrin binds directly to Musk. Mutations in AChR, Musk and other partners are responsible for diseases of the NMJ, such as the autoimmune syndrome myasthenia gravis. Length = 288

>gnl|CDD|133168 cd05036, PTKc_ALK_LTK, Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 9/90 (10%)

Query: 632 IGNGGHGSVYRAEL------PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRN 685
           +G+G  G VY               VAVK    S  C +  D+ +FL E   +++  H+N
Sbjct: 14  LGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPES--CSE-QDESDFLMEALIMSKFNHQN 70

Query: 686 IVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
           IV+  G        F++ E +  G L + L
Sbjct: 71  IVRLIGVSFERLPRFILLELMAGGDLKSFL 100

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well as visceral muscle differentiation in Drosophila. ALK is aberrantly expressed as fusion proteins, due to chromosomal translocations, in about 60% of anaplastic large cell lymphomas (ALCLs). ALK fusion proteins are also found in rare cases of diffuse large B cell lymphomas (DLBCLs). LTK is mainly expressed in B lymphocytes and neuronal tissues. It is important in cell proliferation and survival. Transgenic mice expressing TLK display retarded growth and high mortality rate. In addition, a polymorphism in mouse and human LTK is implicated in the pathogenesis of systemic lupus erythematosus. Length = 277

>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 3/84 (3%)

Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG 691
           +G+G  G VY+A+     + A  K    I  +   + ++F+ E+  L+E +H NIV  Y 
Sbjct: 13  LGDGAFGKVYKAQHKETGLFAAAK---IIQIESEEELEDFMVEIDILSECKHPNIVGLYE 69

Query: 692 FCSHAQHSFLVYEFLERGSLAAIL 715
              +    +++ EF + G+L +I+
Sbjct: 70  AYFYENKLWILIEFCDGGALDSIM 93

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. SmSLK is capable of activating the MAPK Jun N-terminal kinase (JNK) pathway in human embryonic kidney (HEK) cells as well as in Xenopus oocytes. It may participate in regulating MAPK cascades during host-parasite interactions. Length = 280

>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 3/88 (3%)

Query: 632 IGNGGHGSVYRA-ELPSGEVVAVK--KFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVK 688
           +G G   S Y+A ++ +G ++AVK   +  +   +Q    +    E++ +  + H +I++
Sbjct: 8   LGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIR 67

Query: 689 FYGFCSHAQHSFLVYEFLERGSLAAILS 716
             G      H  L  E++  GS++ +LS
Sbjct: 68  MLGATCEDSHFNLFVEWMAGGSVSHLLS 95

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regulating cell survival and apoptosis. MEKK1 also plays a role in cell migration, tissue maintenance and homeostasis, and wound healing. Length = 268

>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 5/80 (6%)

Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG 691
           +G G  G V+     +   VAVK            D K+FL E Q + ++RH  +++ Y 
Sbjct: 14  LGAGQFGEVWEGLWNNTTPVAVKTLKPGT-----MDPKDFLAEAQIMKKLRHPKLIQLYA 68

Query: 692 FCSHAQHSFLVYEFLERGSL 711
            C+  +  ++V E ++ GSL
Sbjct: 69  VCTLEEPIYIVTELMKYGSL 88

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261

>gnl|CDD|173632 cd05051, PTKc_DDR, Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

 Score = 42.7 bits (101), Expect = 4e-04
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 5/67 (7%)

Query: 651 VAVKKFHSSIPCD-QIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERG 709
           VAVK     +  D     +++FL EV+ L+ +   NI +  G C+      ++ E++E G
Sbjct: 49  VAVKV----LRPDASDNAREDFLKEVKILSRLSDPNIARLLGVCTVDPPLCMIMEYMENG 104

Query: 710 SLAAILS 716
            L   L 
Sbjct: 105 DLNQFLQ 111

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 296

>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

 Score = 42.6 bits (101), Expect = 4e-04
 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 9/72 (12%)

Query: 623 TNDFDAEYCIGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIAD-QKEFLTEVQALTE 680
           T  F+    IG G +G VY+A    +G++VA+K          I D ++E   E   L +
Sbjct: 5   TGIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDI------IEDEEEEIKEEYNILRK 58

Query: 681 I-RHRNIVKFYG 691
              H NI  FYG
Sbjct: 59  YSNHPNIATFYG 70

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin III may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. It may also function as a cargo carrier during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. The Drosophila class III myosin, called NinaC (Neither inactivation nor afterpotential protein C), is critical in normal adaptation and termination of photoresponse. Vertebrates contain two isoforms of class III myosin, IIIA and IIIB. This subfamily also includes mammalian NIK-like embryo-specific kinase (NESK), Traf2- and Nck-interacting kinase (TNIK), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Length = 275

>gnl|CDD|177649 PLN00009, PLN00009, cyclin-dependent kinase A; Provisional

 Score = 42.5 bits (100), Expect = 4e-04
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 13/82 (15%)

Query: 632 IGNGGHGSVYRA-ELPSGEVVAVKKFH-----SSIPCDQIADQKEFLTEVQALTEIRHRN 685
           IG G +G VY+A +  + E +A+KK         +P   I        E+  L E++H N
Sbjct: 10  IGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAI-------REISLLKEMQHGN 62

Query: 686 IVKFYGFCSHAQHSFLVYEFLE 707
           IV+        +  +LV+E+L+
Sbjct: 63  IVRLQDVVHSEKRLYLVFEYLD 84

Length = 294

>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

 Score = 42.6 bits (100), Expect = 5e-04
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 9/90 (10%)

Query: 632 IGNGGHGSVYRAE------LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRN 685
           +G G  G V +A             VAVK    +    ++ D    L+E   L ++ H +
Sbjct: 8   LGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRD---LLSEFNLLKQVNHPH 64

Query: 686 IVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
           ++K YG CS      L+ E+ + GSL + L
Sbjct: 65  VIKLYGACSQDGPLLLIVEYAKYGSLRSFL 94

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leading to autophosphorylation, activation, and intracellular signaling. RET is essential for the development of the sympathetic, parasympathetic and enteric nervous systems, and the kidney. RET disruption by germline mutations causes diseases in humans including congenital aganglionosis of the gastrointestinal tract (Hirschsprung's disease) and three related inherited cancers: multiple endocrine neoplasia type 2A (MEN2A), MEN2B, and familial medullary thyroid carcinoma (FMTC). Length = 290

>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

 Score = 42.4 bits (100), Expect = 5e-04
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 4/86 (4%)

Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG 691
           +G G  GSV +  L +  ++   K  ++ P   +  QK+ L E++     +   IVK+YG
Sbjct: 9   LGEGAGGSVTKCRLKNTGMIFALKTITTDPNPDL--QKQILRELEINKSCKSPYIVKYYG 66

Query: 692 FCSHAQHSFL--VYEFLERGSLAAIL 715
                  S +    E+ E GSL +I 
Sbjct: 67  AFLDESSSSIGIAMEYCEGGSLDSIY 92

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Pek1/Skh1 from Schizosaccharomyces pombe and MKK2 from Saccharomyces cerevisiae, and related proteins. Both fission yeast Pek1 and baker's yeast MKK2 are components of the cell integrity MAPK pathway. In fission yeast, Pek1 phosphorylates and activates the MAPK Pmk1/Spm1 and is regulated by the MAPKKK Mkh1. In baker's yeast, the pathway involves the MAPK Slt2, the MAPKKs MKK1 and MKK2, and the MAPKKK Bck1. The cell integrity MAPK cascade is activated by multiple stress conditions, and is essential in cell wall construction, morphogenesis, cytokinesis, and ion homeostasis. Length = 287

>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

 Score = 42.1 bits (100), Expect = 6e-04
 Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 8/92 (8%)

Query: 624 NDFDAEYCIGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKE---FLTEVQALT 679
           +DF+    +G G  G V       SG+  A+K         +I   K+    L E + L 
Sbjct: 1   DDFEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSK----AKIVKLKQVEHVLNEKRILQ 56

Query: 680 EIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
            IRH  +V  YG      + +LV E++  G L
Sbjct: 57  SIRHPFLVNLYGSFQDDSNLYLVMEYVPGGEL 88

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. Length = 290

>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

 Score = 42.2 bits (99), Expect = 6e-04
 Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)

Query: 629 EYCIGNGGHGSVYRAEL-PSGE---VVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHR 684
           E  IG G  G V R  L   G+    VA+K   S     Q   +++FL+E   + +  H 
Sbjct: 9   EEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQ---RRDFLSEASIMGQFDHP 65

Query: 685 NIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
           NI+   G  + ++   ++ EF+E G+L + L
Sbjct: 66  NIIHLEGVVTKSRPVMIITEFMENGALDSFL 96

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion. EphBRs play important roles in synapse formation and plasticity, spine morphogenesis, axon guidance, and angiogenesis. In the intestinal epithelium, EphBRs are Wnt signaling target genes that control cell compartmentalization. They function as suppressors of color cancer progression. Length = 269

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.9 bits (89), Expect = 7e-04
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 310 NLTFIDLSRNNFYGEISSNW-GKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNH 368
           NL  +DLS N     I        P L  L++S NN+T   P     +  L++LDLS N+
Sbjct: 1   NLKSLDLSNNRL-TVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 369 I 369
           +
Sbjct: 60  L 60

Length = 60

>gnl|CDD|133217 cd05086, PTKc_Aatyk2, Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

 Score = 41.8 bits (98), Expect = 7e-04
 Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 6/88 (6%)

Query: 632 IGNGGHGSVYRAEL---PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVK 688
           IGNG  G V  +E+        V VK+  ++       +Q EFL +      ++H NI++
Sbjct: 3   IGNGWFGKVLLSEIYTDTGVARVVVKELKANA---SSKEQNEFLQQGDPYRILQHPNILQ 59

Query: 689 FYGFCSHAQHSFLVYEFLERGSLAAILS 716
             G C  A    LV+E+ E G L + LS
Sbjct: 60  CLGQCVEAIPYLLVFEYCELGDLKSYLS 87

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage spermatogenesis. Although it is classified as a tyr kinase based on sequence similarity and the phylogenetic tree, Aatyk2 has been characterized as a serine/threonine kinase. Length = 268

>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

 Score = 41.5 bits (97), Expect = 8e-04
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 7/88 (7%)

Query: 632 IGNGGHGSVYRAELP----SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIV 687
           IG G  G V+R  L         VA+K         Q   +++FL+E   + +  H NI+
Sbjct: 13  IGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQ---RQDFLSEASIMGQFSHHNII 69

Query: 688 KFYGFCSHAQHSFLVYEFLERGSLAAIL 715
           +  G  +  + + ++ E++E G+L   L
Sbjct: 70  RLEGVVTKFKPAMIITEYMENGALDKYL 97

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. The EphA2 receptor is overexpressed in tumor cells and tumor blood vessels in a variety of cancers including breast, prostate, lung, and colon. As a result, it is an attractive target for drug design since its inhibition could affect several aspects of tumor progression. Length = 268

>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

 Score = 41.6 bits (98), Expect = 8e-04
 Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 9/85 (10%)

Query: 632 IGNGGHGSVYRAE-LPSGE----VVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNI 686
           +G+G  G+VY+   +P GE     VA+K              KE L E   +  + H ++
Sbjct: 15  LGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSP---KANKEILDEAYVMASVDHPHV 71

Query: 687 VKFYGFCSHAQHSFLVYEFLERGSL 711
           V+  G C  +Q   L+ + +  G L
Sbjct: 72  VRLLGICLSSQVQ-LITQLMPLGCL 95

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score = 41.8 bits (99), Expect = 8e-04
 Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 10/82 (12%)

Query: 632 IGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKE-----FLTEVQALTEIRHRN 685
           +G G +  VY+A    +G +VA+KK    I   +  + K+      L E++ L E++H N
Sbjct: 8   LGEGTYAVVYKARDKETGRIVAIKK----IKLGERKEAKDGINFTALREIKLLQELKHPN 63

Query: 686 IVKFYGFCSHAQHSFLVYEFLE 707
           I+       H  +  LV+EF+E
Sbjct: 64  IIGLLDVFGHKSNINLVFEFME 85

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase, Src

 Score = 41.6 bits (97), Expect = 8e-04
 Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 8/98 (8%)

Query: 618 EIVRETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQA 677
           EI RE+     E  +G G  G V+         VA+K              + FL E Q 
Sbjct: 2   EIPRES--LRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-----MSPEAFLQEAQV 54

Query: 678 LTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
           + ++RH  +V+ Y   S  +  ++V E++ +GSL   L
Sbjct: 55  MKKLRHEKLVQLYAVVSE-EPIYIVTEYMSKGSLLDFL 91

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Length = 262

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.5 bits (88), Expect = 9e-04
 Identities = 13/37 (35%), Positives = 24/37 (64%)

Query: 478 SLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQ 514
           +L+ L+LS+N L+ +    F+G+  L ++D+S N L 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT 37

Length = 60

>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 41.4 bits (97), Expect = 0.001
 Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 8/84 (9%)

Query: 633 GNGGHGSVYR---AELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKF 689
           G+ G  S+Y    A   +GE+VAVK       C Q  +   +  E+  L  + H NIVK+
Sbjct: 15  GHFGKVSLYCYDPANDGTGEMVAVKTLKRE--CGQ-QNTSGWKKEINILKTLYHENIVKY 71

Query: 690 YGFCSHA--QHSFLVYEFLERGSL 711
            G CS    +   L+ E++  GSL
Sbjct: 72  KGCCSEQGGKGLQLIMEYVPLGSL 95

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283

>gnl|CDD|173691 cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 4/95 (4%)

Query: 624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR 682
            DF     +G GG+G V+ A+   +GE+VA+K+   S+   ++ + +  LTE   LT  +
Sbjct: 1   KDFQILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSL-LFKLNEVRHVLTERDILTTTK 59

Query: 683 HRNIVK-FYGFCSHAQHSFLVYEFLERGSLAAILS 716
              +VK  Y F    ++ +L  E++  G    +L+
Sbjct: 60  SEWLVKLLYAF-QDDEYLYLAMEYVPGGDFRTLLN 93

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. Dbf2p is important in regulating the mitotic exit network (MEN) and in cytokinesis. Length = 333

>gnl|CDD|133178 cd05046, PTK_CCK4, Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 9/90 (10%)

Query: 632 IGNGGHGSVYRAELPSGE------VVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRN 685
           +G G  G V+ A+    E      +V VK    +        Q EF  E+    ++ H+N
Sbjct: 13  LGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKT---KDENLQSEFRRELDMFRKLSHKN 69

Query: 686 IVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
           +V+  G C  A+  +++ E+ + G L   L
Sbjct: 70  VVRLLGLCREAEPHYMILEYTDLGDLKQFL 99

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is still unknown. Other pseudokinases such as HER3 rely on the activity of partner RTKs. Length = 275

>gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 4/85 (4%)

Query: 632 IGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
           +G G  GSV + + +P+G V+A K  H  I     + +K+ L E+Q + E R   IV FY
Sbjct: 13  LGAGNGGSVSKVKHIPTGTVMAKKVVH--IGAKS-SVRKQILRELQIMHECRSPYIVSFY 69

Query: 691 GFCSHAQHSFLVYEFLERGSLAAIL 715
           G   +  +  +  EF++ GSL  I 
Sbjct: 70  GAFLNENNICMCMEFMDCGSLDRIY 94

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Byr1 from Schizosaccharomyces pombe, FUZ7 from Ustilago maydis, and related proteins. Byr1 phosphorylates its downstream target, the MAPK Spk1, and is regulated by the MAPKKK Byr2. The Spk1 cascade is pheromone-responsive and is essential for sporulation and sexual differentiation in fission yeast. FUZ7 phosphorylates and activates its target, the MAPK Crk1, which is required in mating and virulence in U. maydis. Length = 284

>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 12/44 (27%), Positives = 26/44 (59%)

Query: 668 QKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
           + EF+ E + + ++ H  +V+ YG C+  +  ++V E++  G L
Sbjct: 43  EDEFIEEAKVMMKLSHEKLVQLYGVCTKQRPIYIVTEYMSNGCL 86

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256

>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 31/88 (35%), Positives = 54/88 (61%), Gaps = 9/88 (10%)

Query: 632 IGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQK--EFLTEVQALTEIRHRNIVK 688
           IG+G  G+VY A ++ + EVVA+KK   S    + +++K  + + EV+ L ++RH N ++
Sbjct: 23  IGHGSFGAVYFARDVRTNEVVAIKKMSYS---GKQSNEKWQDIIKEVRFLQQLRHPNTIE 79

Query: 689 FYGFCSHAQHS-FLVYEFLERGSLAAIL 715
           + G C   +H+ +LV E+   GS + IL
Sbjct: 80  YKG-CYLREHTAWLVMEYC-LGSASDIL 105

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily members, named TAO1, TAO2, and TAO3. Length = 307

>gnl|CDD|173741 cd07843, STKc_CDC2L1, Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

 Score = 41.1 bits (97), Expect = 0.001
 Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 19/86 (22%)

Query: 632 IGNGGHGSVYRA-ELPSGEVVAVK--KFHSSIPCDQIADQKE-F----LTEVQALTEIRH 683
           I  G +G VYRA +  +GE+VA+K  K            +KE F    L E+  L +++H
Sbjct: 13  IEEGTYGVVYRARDKKTGEIVALKKLKMEK---------EKEGFPITSLREINILLKLQH 63

Query: 684 RNIV--KFYGFCSHAQHSFLVYEFLE 707
            NIV  K     S+    ++V E++E
Sbjct: 64  PNIVTVKEVVVGSNLDKIYMVMEYVE 89

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the major isoform, associates with cyclin L and is expressed throughout the cell cycle. It is involved in RNA processing and the regulation of transcription. CDK11(p58) associates with cyclin D3 and is expressed during the G2/M phase of the cell cycle. It plays roles in spindle morphogenesis, centrosome maturation, sister chromatid cohesion, and the completion of mitosis. CDK11(p46) is formed from the larger isoforms by caspases during TNFalpha- and Fas-induced apoptosis. It functions as a downstream effector kinase in apoptotic signaling pathways and interacts with eukaryotic initiation factor 3f (eIF3f), p21-activated kinase (PAK1), and Ran-binding protein (RanBPM). Length = 293

>gnl|CDD|132947 cd06616, PKc_MKK4, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 9/64 (14%)

Query: 632 IGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRN---IV 687
           IG G  G+V +    PSG ++AVK+  S++  D+  +QK  L ++  +  +R  +   IV
Sbjct: 12  IGRGAFGTVNKMLHKPSGTIMAVKRIRSTV--DE-KEQKRLLMDLDVV--MRSSDCPYIV 66

Query: 688 KFYG 691
           KFYG
Sbjct: 67  KFYG 70

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates the downstream targets, c-Jun N-terminal kinase (JNK) and p38 MAPK, on specific threonine and tyrosine residues. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. Their activation is associated with the induction of cell death. Mice deficient in MKK4 die during embryogenesis and display anemia, severe liver hemorrhage, and abnormal hepatogenesis. MKK4 may also play roles in the immune system and in cardiac hypertrophy. It plays a major role in cancer as a tumor and metastasis suppressor. Under certain conditions, MKK4 is pro-oncogenic. Length = 288

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 7/98 (7%)

Query: 618 EIVRETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQA 677
           EI RE+     E  +G G  G V+         VAVK              + FL E Q 
Sbjct: 2   EIPRES--LKLERKLGAGQFGEVWMGTWNGTTKVAVKTLKPGT-----MSPEAFLQEAQI 54

Query: 678 LTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
           + ++RH  +V+ Y  CS  +  ++V E++ +GSL   L
Sbjct: 55  MKKLRHDKLVQLYAVCSEEEPIYIVTEYMSKGSLLDFL 92

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 5/99 (5%)

Query: 618 EIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV-VAVKKFHSSIPCDQIADQKEFLTEVQ 676
           E   E ++      +G G +G VY A   S +V +A+K+    IP       +    E+ 
Sbjct: 2   EYEYEYDENGERVVLGKGTYGIVYAARDLSTQVRIAIKE----IPERDSRYVQPLHEEIA 57

Query: 677 ALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
             + ++HRNIV++ G  S      +  E +  GSL+A+L
Sbjct: 58  LHSYLKHRNIVQYLGSDSENGFFKIFMEQVPGGSLSALL 96

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It plays important roles in cytokine and stress responses, as well as in reactive oxygen species (ROS)-mediated cellular responses. ASK1 is implicated in various diseases mediated by oxidative stress including inschemic heart disease, hypertension, vessel injury, brain ischemia, Fanconi anemia, asthma, and pulmonary edema, among others. ASK2 (also called MAPKKK6) functions only in a heteromeric complex with ASK1, and can activate ASK1 by direct phosphorylation. The function of MAPKKK15 is still unknown. Length = 268

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.002
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 382 SLTKLILRGNQLTGRLPTEI-GSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQ 440
           +L  L L  N+LT  +P      L  L+ LD S N   +  PE+   L  L  L LS N 
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 441 F 441
            
Sbjct: 60  L 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 67/320 (20%), Positives = 109/320 (34%), Gaps = 64/320 (20%)

Query: 122 LLTHLKVLSFQFNELDGS----IPPEVCQLSSIEELFLYSNHLN------GSLPPFLGNL 171
            L  L+VL  + N L       +   +    S++EL L  N          SL   L   
Sbjct: 21  KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80

Query: 172 SNIVRLYINNNSLSGS---ILTNIGNLKFLFELDLS-------FLPLSVGNLT----NLK 217
             +  L +++N+L      +L ++     L EL L+        L L    L      L+
Sbjct: 81  CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALE 140

Query: 218 SLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQG-- 275
            L L  N L G+       S               L  N      L+   ++ N      
Sbjct: 141 KLVLGRNRLEGA-------SCEALAKA--------LRAN----RDLKELNLANNGIGDAG 181

Query: 276 --TIPESLRNCTSLIRVRLNGNNLT----GNISEALGLYPNLTFIDLSRNNFYGEI---- 325
              + E L+   +L  + LN N LT      ++E L    +L  ++L  NN         
Sbjct: 182 IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL 241

Query: 326 -SSNWGKCPKLGTLNVSMNNIT--GGIP--REIGNMSQLQALDLSLNHIVGEIPKELGKL 380
            S+       L TL++S N+IT  G       +     L  LDL  N    +  +E  +L
Sbjct: 242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGN----KFGEEGAQL 297

Query: 381 NSLTKLILRGNQLTGRLPTE 400
            + + L       +  +  +
Sbjct: 298 LAESLLEPGNELESLWVKDD 317

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|132950 cd06619, PKc_MKK5, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 6/82 (7%)

Query: 632 IGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIAD-QKEFLTEVQALTEIRHRNIVKF 689
           +G+G  G+VY+A  L +  ++AVK     IP D   + QK+ ++E++ L +     I+ F
Sbjct: 9   LGHGNGGTVYKAYHLLTRRILAVK----VIPLDITVELQKQIMSELEILYKCDSPYIIGF 64

Query: 690 YGFCSHAQHSFLVYEFLERGSL 711
           YG         +  EF++ GSL
Sbjct: 65  YGAFFVENRISICTEFMDGGSL 86

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that phosphorylates its downstream target, extracellular signal-regulated kinase 5 (ERK5), on specific threonine and tyrosine residues. MKK5 is activated by MEKK2 and MEKK3 in response to mitogenic and stress stimuli. The ERK5 cascade promotes cell proliferation, differentiation, neuronal survival, and neuroprotection. This cascade plays an essential role in heart development. Mice deficient in either ERK5 or MKK5 die around embryonic day 10 due to cardiovascular defects including underdevelopment of the myocardium. In addition, MKK5 is associated with metastasis and unfavorable prognosis in prostate cancer. Length = 279

>gnl|CDD|133187 cd05056, PTKc_FAK, Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 32/102 (31%), Positives = 45/102 (44%), Gaps = 10/102 (9%)

Query: 618 EIVRETNDFDAEYCIGNGGHGSVYRA--ELPSGEV--VAVKKFHSSIPCDQIADQKEFLT 673
           EI RE  D     CIG G  G VY+     P  E   VAVK   +   C   + +++FL 
Sbjct: 2   EIQRE--DITLGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKN---CTSPSVREKFLQ 56

Query: 674 EVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
           E   + +  H +IVK  G  +     ++V E    G L + L
Sbjct: 57  EAYIMRQFDHPHIVKLIGVITE-NPVWIVMELAPLGELRSYL 97

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions and at growth factor receptors. Through diverse molecular interactions, FAK functions as a biosensor or integrator to control cell motility. It is a key regulator of cell survival, proliferation, migration and invasion, and thus plays an important role in the development and progression of cancer. Src binds to autophosphorylated FAK forming the FAK-Src dual kinase complex, which is activated in a wide variety of tumor cells and generates signals promoting growth and metastasis. FAK is being developed as a target for cancer therapy. Length = 270

>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 8/92 (8%)

Query: 625 DFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHR 684
           +      IG G  G V   +   G  VAVK     I  D  A  + FL E   +T++RH 
Sbjct: 7   ELKLLQTIGKGEFGDVMLGDY-RGNKVAVK----CIKNDATA--QAFLAEASVMTQLRHS 59

Query: 685 NIVKFYGFCSHAQHS-FLVYEFLERGSLAAIL 715
           N+V+  G     +   ++V E++ +GSL   L
Sbjct: 60  NLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYL 91

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256

>gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 13/90 (14%)

Query: 632 IGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQK-EFL-TEVQALTEIRHRNIVK 688
           IG G  G V  A +  +G  VAVKK       D    Q+ E L  EV  + + +H NIV+
Sbjct: 27  IGEGSTGIVCIATDKSTGRQVAVKKM------DLRKQQRRELLFNEVVIMRDYQHPNIVE 80

Query: 689 FYGFCSH--AQHSFLVYEFLERGSLAAILS 716
            Y   S+      ++V EFLE G+L  I++
Sbjct: 81  MYS--SYLVGDELWVVMEFLEGGALTDIVT 108

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs found in group I PAKs, such as an AID (autoinhibitory domain) and SH3 binding sites. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. While group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX, no such binding has been demonstrated for group II PAKs. Some known substrates of group II PAKs are also substrates of group I PAKs such as Raf, BAD, LIMK and GEFH1. Unique group II substrates include MARK/Par-1 and PDZ-RhoGEF. Group II PAKs play important roles in filopodia formation, neuron extension, cytoskeletal organization, and cell survival. Length = 285

>gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine Kinase, Tie2

 Score = 40.0 bits (93), Expect = 0.003
 Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 7/96 (7%)

Query: 624 NDFDAEYCIGNGGHGSVYRAELPSGEV---VAVKKFHSSIPCDQIADQKEFLTEVQALTE 680
           ND   +  IG G  G V +A +    +    A+K+       D   D ++F  E++ L +
Sbjct: 7   NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKD---DHRDFAGELEVLCK 63

Query: 681 I-RHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
           +  H NI+   G C H  + +L  E+   G+L   L
Sbjct: 64  LGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFL 99

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. Tie2 signaling plays key regulatory roles in vascular integrity and quiescence, and in inflammation. Length = 303

>gnl|CDD|143344 cd07839, STKc_CDK5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 15/84 (17%)

Query: 632 IGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKE-----FLTEVQALTEIRHRN 685
           IG G +G+V++A    + E+VA+K+        ++ D  E      L E+  L E++H+N
Sbjct: 8   IGEGTYGTVFKAKNRETHEIVALKRV-------RLDDDDEGVPSSALREICLLKELKHKN 60

Query: 686 IVKFYGFCSHAQHSF-LVYEFLER 708
           IV+ Y    H+     LV+E+ ++
Sbjct: 61  IVRLYDVL-HSDKKLTLVFEYCDQ 83

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also important in synaptic plasticity and learning. CDK5 also participates in protecting against cell death and promoting angiogenesis. Impaired CDK5 activity is implicated in Alzheimer's disease, amyotrophic lateral sclerosis, Parkinson's disease, Huntington's disease and acute neuronal injury. Length = 284

>gnl|CDD|173634 cd05053, PTKc_FGFR, Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 10/87 (11%)

Query: 632 IGNGGHGSVYRAEL-----PSGEV-VAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHR 684
           +G G  G V +AE      P+    VAVK        ++  D  + ++E++ +  I +H+
Sbjct: 20  LGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDD-ATEK--DLSDLVSEMEMMKMIGKHK 76

Query: 685 NIVKFYGFCSHAQHSFLVYEFLERGSL 711
           NI+   G C+     ++V E+   G+L
Sbjct: 77  NIINLLGVCTQEGPLYVVVEYAAHGNL 103

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, and intracellular signaling. There are at least 23 FGFs and four types of FGFRs. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. FGF/FGFR signaling is important in the regulation of embryonic development, homeostasis, and regenerative processes. Depending on the cell type and stage, FGFR signaling produces diverse cellular responses including proliferation, growth arrest, differentiation, and apoptosis. Aberrant signaling leads to many human diseases such as skeletal, olfactory, and metabolic disorders, as well as cancer. Length = 293

>gnl|CDD|173752 cd07861, STKc_CDK1_euk, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 13/81 (16%)

Query: 632 IGNGGHGSVYRAE-LPSGEVVAVKKFH-----SSIPCDQIADQKEFLTEVQALTEIRHRN 685
           IG G +G VY+     +G++VA+KK         +P   I        E+  L E++H N
Sbjct: 8   IGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAI-------REISLLKELQHPN 60

Query: 686 IVKFYGFCSHAQHSFLVYEFL 706
           IV            +L++EFL
Sbjct: 61  IVCLQDVLMQESRLYLIFEFL 81

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression. CDK1/cyclin A2 has also been implicated as an important regulator of S phase events. The CDK1/cyclin B complex is critical for G2 to M phase transition. It induces mitosis by activating nuclear enzymes that regulate chromatin condensation, nuclear membrane degradation, mitosis-specific microtubule and cytoskeletal reorganization. CDK1 also associates with cyclin E and plays a role in the entry into S phase. CDK1 transcription is stable throughout the cell cycle but is modulated in some pathological conditions. It may play a role in regulating apoptosis under these conditions. In breast cancer cells, HER2 can mediate apoptosis by inactivating CDK1. Activation of CDK1 may contribute to HIV-1 induced apoptosis and neuronal apoptosis in neurodegenerative diseases. Length = 285

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	716
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.98
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.94
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.93
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.92
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.85
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.85
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.81
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.77
KOG1187	361	consensus Serine/threonine protein kinase [Signal	99.76
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.76
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.74
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.72
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.67
KOG0595	429	consensus Serine/threonine-protein kinase involved	99.62
PLN03150	623	hypothetical protein; Provisional	99.59
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	99.57
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	99.55
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	99.49
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	99.49
KOG0192	362	consensus Tyrosine kinase specific for activated (	99.46
KOG2052	513	consensus Activin A type IB receptor, serine/threo	99.45
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	99.43
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	99.43
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.42
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	99.41
KOG0575	592	consensus Polo-like serine/threonine protein kinas	99.37
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.37
PLN03150	623	hypothetical protein; Provisional	99.37
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	99.35
KOG3653	534	consensus Transforming growth factor beta/activin	99.34
KOG0611	668	consensus Predicted serine/threonine protein kinas	99.33
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	99.29
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	99.28
KOG0598	357	consensus Ribosomal protein S6 kinase and related	99.25
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.25
KOG0581	364	consensus Mitogen-activated protein kinase kinase	99.24
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	99.24
KOG0605	550	consensus NDR and related serine/threonine kinases	99.24
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.23
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	99.22
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	99.22
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	99.2
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	99.19
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	99.17
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	99.17
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	99.16
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	99.15
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	99.15
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	99.14
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	99.14
KOG0583	370	consensus Serine/threonine protein kinase [Signal	99.14
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.13
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	99.13
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	99.13
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	99.13
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	99.12
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	99.12
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	99.12
PTZ00263	329	protein kinase A catalytic subunit; Provisional	99.12
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	99.12
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	99.11
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	99.11
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	99.1
PHA02988	283	hypothetical protein; Provisional	99.1
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	99.1
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	99.09
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	99.09
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	99.08
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.08
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.08
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	99.08
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	99.08
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	99.07
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.07
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	99.07
KOG0586	596	consensus Serine/threonine protein kinase [General	99.07
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.07
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	99.06
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	99.06
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	99.06
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.06
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	99.06
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	99.05
KOG0582	516	consensus Ste20-like serine/threonine protein kina	99.05
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	99.05
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	99.05
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	99.05
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	99.05
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	99.05
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	99.05
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	99.04
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	99.04
KOG0610	459	consensus Putative serine/threonine protein kinase	99.04
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	99.04
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.04
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	99.04
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	99.03
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	99.03
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	99.03
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	99.03
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	99.02
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	99.02
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	99.02
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	99.02
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	99.02
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	99.01
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	99.01
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	99.01
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	99.01
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	99.01
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	99.01
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	99.01
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	99.01
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	99.01
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	99.01
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	99.0
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	99.0
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	99.0
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	99.0
PLN00034	353	mitogen-activated protein kinase kinase; Provision	98.99
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.99
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	98.99
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	98.99
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	98.99
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	98.99
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	98.98
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	98.98
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	98.98
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	98.97
KOG0578	550	consensus p21-activated serine/threonine protein k	98.97
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	98.97
KOG0201	467	consensus Serine/threonine protein kinase [Signal	98.97
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	98.97
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	98.96
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	98.96
KOG0198	313	consensus MEKK and related serine/threonine protei	98.96
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	98.96
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	98.96
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	98.96
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	98.96
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	98.96
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	98.96
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.95
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	98.95
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	98.95
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	98.95
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	98.95
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	98.95
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	98.94
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	98.94
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	98.94
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	98.94
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	98.94
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	98.94
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	98.94
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	98.93
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	98.93
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	98.93
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	98.93
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	98.93
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	98.93
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	98.93
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.93
PTZ00267	478	NIMA-related protein kinase; Provisional	98.93
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	98.93
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	98.93
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	98.92
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	98.92
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	98.92
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	98.92
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	98.92
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	98.92
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	98.92
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	98.92
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	98.92
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	98.92
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	98.92
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	98.91
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	98.91
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	98.91
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	98.91
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	98.91
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	98.91
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	98.91
KOG4721	904	consensus Serine/threonine protein kinase, contain	98.91
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	98.91
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.9
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	98.9
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	98.9
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	98.9
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	98.9
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	98.9
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	98.9
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	98.9
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	98.9
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.9
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	98.9
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	98.9
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	98.9
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	98.89
KOG0577	948	consensus Serine/threonine protein kinase [Signal	98.89
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	98.89
KOG0661	538	consensus MAPK related serine/threonine protein ki	98.89
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	98.89
KOG4717	864	consensus Serine/threonine protein kinase [Signal	98.89
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	98.89
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	98.88
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	98.88
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	98.88
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	98.88
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	98.88
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	98.88
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	98.88
KOG0694	694	consensus Serine/threonine protein kinase [Signal	98.87
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	98.87
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	98.87
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	98.86
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	98.86
PTZ00266	1021	NIMA-related protein kinase; Provisional	98.86
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	98.86
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	98.86
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	98.86
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	98.86
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	98.86
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	98.86
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	98.86
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	98.86
KOG0589	426	consensus Serine/threonine protein kinase [General	98.86
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	98.86
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	98.85
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	98.85
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	98.85
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	98.85
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	98.85
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	98.85
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	98.85
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	98.85
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	98.85
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	98.85
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	98.85
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	98.85
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	98.84
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	98.84
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	98.84
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	98.84
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	98.84
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	98.84
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.83
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	98.83
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	98.83
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	98.83
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	98.83
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	98.83
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	98.83
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	98.83
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	98.83
PRK09188	365	serine/threonine protein kinase; Provisional	98.82
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	98.82
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	98.82
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	98.82
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	98.82
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	98.82
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	98.82
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	98.82
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	98.81
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	98.81
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	98.81
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	98.81
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	98.81
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	98.81
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	98.81
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	98.81
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	98.8
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	98.8
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	98.8
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	98.8
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	98.8
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	98.8
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	98.8
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	98.8
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	98.8
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	98.79
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	98.79
PTZ00283	496	serine/threonine protein kinase; Provisional	98.79
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	98.79
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	98.79
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	98.79
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	98.79
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	98.79
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	98.79
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	98.79
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	98.79
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	98.78
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	98.78
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	98.78
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	98.78
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	98.77
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	98.77
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	98.77
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	98.76
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	98.76
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	98.76
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.76
KOG1989	738	consensus ARK protein kinase family [Signal transd	98.76
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	98.75
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	98.75
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	98.75
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	98.75
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	98.74
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	98.74
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	98.74
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	98.74
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	98.73
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	98.73
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.73
PLN00009	294	cyclin-dependent kinase A; Provisional	98.73
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	98.73
PHA03212	391	serine/threonine kinase US3; Provisional	98.73
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	98.72
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	98.72
PLN03224	507	probable serine/threonine protein kinase; Provisio	98.72
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	98.72
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	98.72
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	98.72
KOG0607	463	consensus MAP kinase-interacting kinase and relate	98.72
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	98.71
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	98.71
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	98.71
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	98.71
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	98.7
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	98.7
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	98.7
PTZ00036	440	glycogen synthase kinase; Provisional	98.7
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	98.7
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	98.7
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	98.69
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	98.68
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	98.68
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	98.68
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	98.68
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	98.67
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	98.67
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	98.67
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	98.66
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	98.66
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	98.66
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	98.65
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	98.65
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	98.65
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	98.65
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	98.65
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	98.65
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	98.65
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	98.65
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	98.64
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	98.62
PRK10345	210	hypothetical protein; Provisional	98.62
PHA03211	461	serine/threonine kinase US3; Provisional	98.61
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	98.61
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	98.6
PTZ00024	335	cyclin-dependent protein kinase; Provisional	98.6
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	98.6
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	98.59
PHA03209	357	serine/threonine kinase US3; Provisional	98.59
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	98.59
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	98.59
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	98.58
KOG0576	829	consensus Mitogen-activated protein kinase kinase	98.57
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	98.57
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	98.57
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	98.56
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	98.56
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	98.56
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	98.56
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	98.54
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	98.54
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	98.54
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	98.54
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	98.54
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	98.54
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	98.54
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	98.52
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	98.51
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	98.51
PHA03207	392	serine/threonine kinase US3; Provisional	98.5
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	98.5
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	98.5
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	98.49
KOG0690	516	consensus Serine/threonine protein kinase [Signal	98.49
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	98.48
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	98.48
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	98.48
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	98.47
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	98.47
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	98.46
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	98.44
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	98.43
PRK14879	211	serine/threonine protein kinase; Provisional	98.43
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.42
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	98.42
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	98.42
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	98.41
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	98.39
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	98.38
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.36
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	98.36
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	98.34
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	98.33
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	98.32
PTZ00284	467	protein kinase; Provisional	98.3
PHA03210	501	serine/threonine kinase US3; Provisional	98.28
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	98.28
PRK09605	535	bifunctional UGMP family protein/serine/threonine	98.27
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	98.26
KOG1152	772	consensus Signal transduction serine/threonine kin	98.26
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	98.25
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	98.24
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	98.23
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	98.22
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.22
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	98.22
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	98.21
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	98.21
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	98.21
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	98.18
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.17
KOG0696	683	consensus Serine/threonine protein kinase [Signal	98.16
KOG0584	632	consensus Serine/threonine protein kinase [General	98.16
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.09
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.07
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.04
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	98.03
KOG0695	593	consensus Serine/threonine protein kinase [Signal	98.02
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.99
KOG0596	677	consensus Dual specificity; serine/threonine and t	97.99
KOG1027	903	consensus Serine/threonine protein kinase and endo	97.94
smart00090	237	RIO RIO-like kinase.	97.86
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.84
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	97.82
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	97.8
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.78
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	97.77
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.73
PRK12274	218	serine/threonine protein kinase; Provisional	97.73
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.72
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	97.71
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.69
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	97.68
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	97.67
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	97.66
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.64
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	97.61
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.59
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	97.59
KOG1167	418	consensus Serine/threonine protein kinase of the C	97.57
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.49
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	97.48
PRK15386	426	type III secretion protein GogB; Provisional	97.41
PRK15386	426	type III secretion protein GogB; Provisional	97.4
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	97.37
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	97.37
PHA02882	294	putative serine/threonine kinase; Provisional	97.3
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	97.28
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	97.15
COG0515	384	SPS1 Serine/threonine protein kinase [General func	97.15
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.13
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	97.11
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	97.0
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.93
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	96.91
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.89
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	96.84
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.68
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	96.6
KOG1290	590	consensus Serine/threonine protein kinase [Signal	96.32
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.25
COG2112	201	Predicted Ser/Thr protein kinase [Signal transduct	96.15
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.13
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	96.12
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	96.1
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	95.98
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	95.65
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	94.9
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.81
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	94.77
KOG0473	326	consensus Leucine-rich repeat protein [Function un	94.67
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.66
PF03109	119	ABC1: ABC1 family; InterPro: IPR004147 This entry	94.0
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.87
KOG4308	478	consensus LRR-containing protein [Function unknown	93.41

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.2e-81  Score=751.38  Aligned_cols=686  Identities=34%  Similarity=0.576  Sum_probs=465.2

Q ss_pred             hHHHHHHHHHHhhcccCCCCCCCCCcCCCCCCCCCCCCcceeeeeeCCCCCEEEEEcCCCCCccccCCCCCCCCCCCcEE
Q 041300            2 NEEADALLKWKASLQSHNQSLLPSWTNASTNVSSKISPCAWYGISCNDAGRVTNISLRNTGLSGTLRDFSFSSFPQLVHL   81 (716)
Q Consensus         2 ~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~c~w~gv~c~~~~~v~~l~l~~~~l~~~~~~~~f~~l~~L~~L   81 (716)
                      ++|++||++||+++ .+|.+.+.+|....       +||.|.||+|+..++|+.|+++++++.|.+ +..|..+++|+.|
T Consensus        28 ~~~~~~l~~~~~~~-~~~~~~~~~w~~~~-------~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~-~~~~~~l~~L~~L   98 (968)
T PLN00113         28 AEELELLLSFKSSI-NDPLKYLSNWNSSA-------DVCLWQGITCNNSSRVVSIDLSGKNISGKI-SSAIFRLPYIQTI   98 (968)
T ss_pred             HHHHHHHHHHHHhC-CCCcccCCCCCCCC-------CCCcCcceecCCCCcEEEEEecCCCccccC-ChHHhCCCCCCEE
Confidence            67899999999999 57777788996554       899999999988889999999999999877 5678889999999


Q ss_pred             ECCCCCccccCccccc-CCCCCCEEECcCCcCcc----------------------cCCccccCCCCCCEEEcccccCcc
Q 041300           82 DLSLNGFFGTIPSQIG-NLTKLSYISLDSNQLSG----------------------KIPAEVGLLTHLKVLSFQFNELDG  138 (716)
Q Consensus        82 ~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~N~l~~----------------------~~p~~~~~l~~L~~L~L~~N~l~~  138 (716)
                      +|++|++.+.+|..+. .+++|++|+|++|.+++                      .+|..++.+++|++|+|++|.+.+
T Consensus        99 ~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~  178 (968)
T PLN00113         99 NLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVG  178 (968)
T ss_pred             ECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccc
Confidence            9999998877776544 67777777777666654                      444445555555555555555555


Q ss_pred             CCCccccCCCCCceeecccccccCCCCccccCCcCCcEEEeecccccccccccccCCCCCceeeCCC------CCcccCC
Q 041300          139 SIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSF------LPLSVGN  212 (716)
Q Consensus       139 ~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~------~~~~~~~  212 (716)
                      .+|..++++++|++|+|++|.+++..|..|+++++|++|+|++|.+++..|..+.++++|+.|+++.      .|..+.+
T Consensus       179 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~  258 (968)
T PLN00113        179 KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGN  258 (968)
T ss_pred             cCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhC
Confidence            5555555555555555555555555555555555566666666555555555556666666665542      3445556


Q ss_pred             CCccCEEEeeCCcCcccCCCccccc-cccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEE
Q 041300          213 LTNLKSLGLMDNHLSGSIPPSFGNS-MLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVR  291 (716)
Q Consensus       213 l~~L~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~  291 (716)
                      +++|++|++++|.+.+.+|..+... +|+.|++++|.+.+..|..+..++.|+.|++++|.+.+..|..+..+++|+.|+
T Consensus       259 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  338 (968)
T PLN00113        259 LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQ  338 (968)
T ss_pred             CCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEE
Confidence            6666666666666665555554432 566666666666666666666666666666666666666666666666666666


Q ss_pred             ccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCcccc
Q 041300          292 LNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVG  371 (716)
Q Consensus       292 l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  371 (716)
                      +++|.+++..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++.+.+|..+..+++|+.|++++|++++
T Consensus       339 L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~  418 (968)
T PLN00113        339 LWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSG  418 (968)
T ss_pred             CcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeee
Confidence            66666666666666666666666666666655555544444444444444444444444444444555555555555544


Q ss_pred             ccCcccCC------------------------CCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcC
Q 041300          372 EIPKELGK------------------------LNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGN  427 (716)
Q Consensus       372 ~~~~~~~~------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  427 (716)
                      ..|..+..                        +++|+.|++++|++.+.+|..+ ..++|+.|++++|.+.+..|..+.+
T Consensus       419 ~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~  497 (968)
T PLN00113        419 ELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGS  497 (968)
T ss_pred             ECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhh
Confidence            44444444                        4444444444444444444433 3456777777788888888888888


Q ss_pred             cCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEE
Q 041300          428 LLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIID  507 (716)
Q Consensus       428 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~  507 (716)
                      +++|+.|++++|++.+.+|..+..+++|++|++++|.+++.+|..+..+++|+.|++++|++++.+|..+..+++|+.++
T Consensus       498 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~  577 (968)
T PLN00113        498 LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVN  577 (968)
T ss_pred             hhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCcccccCCCccccCCCCcccccCCCCCCCCCC--CCCCCccccCCCCCCCCcceeEEechhhHHHHHHHHHHHHH-h
Q 041300          508 ISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGVK--GMQPCKVFSSHKQNSGGKWFAVVFPVLGALFVSMALIAIFI-L  584 (716)
Q Consensus       508 ls~N~l~~~~p~~~~~~~~~~~~~~~n~~~c~~~~--~~~~~~~~~~~~~~s~~~~~~vv~~v~~~~~~~~~~~~~~~-~  584 (716)
                      +++|++.|.+|..+.+..+....+.||+..|++..  +..+|...    .. ...+..++++++++++++++++++++ +
T Consensus       578 ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~~~~c~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  652 (968)
T PLN00113        578 ISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPPCKRV----RK-TPSWWFYITCTLGAFLVLALVAFGFVFI  652 (968)
T ss_pred             ccCCcceeeCCCcchhcccChhhhcCCccccCCccccCCCCCccc----cc-cceeeeehhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988888888888999999998643  23456321    11 11222233333333333222222222 2


Q ss_pred             hhccCCcCCCCCCCCCCCCCceeccc----CccchHHHHHHhhcCCcccccccCCCceEEEEEEc-CCCCEEEEEEcccc
Q 041300          585 RKQKSDSGDRQSSNQNPQGLFSILNF----EGKLVYDEIVRETNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSS  659 (716)
Q Consensus       585 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~  659 (716)
                      +++++....+... .  ...+.....    ...+.++++.   ..+...++||+|+||.||+|.. .++..||||++...
T Consensus       653 ~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~  726 (968)
T PLN00113        653 RGRNNLELKRVEN-E--DGTWELQFFDSKVSKSITINDIL---SSLKEENVISRGKKGASYKGKSIKNGMQFVVKEINDV  726 (968)
T ss_pred             Hhhhccccccccc-c--cccccccccccccchhhhHHHHH---hhCCcccEEccCCCeeEEEEEECCCCcEEEEEEccCC
Confidence            2222111111100 0  001111000    1123333333   4577788999999999999975 57899999998652


Q ss_pred             CCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEcccCCCCHHhHhC
Q 041300          660 IPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAILS  716 (716)
Q Consensus       660 ~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~GsL~~~l~  716 (716)
                      ..        ....|++.+++++|||||+++|+|.+++..|+|||||++|+|.++++
T Consensus       727 ~~--------~~~~~~~~l~~l~HpnIv~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~  775 (968)
T PLN00113        727 NS--------IPSSEIADMGKLQHPNIVKLIGLCRSEKGAYLIHEYIEGKNLSEVLR  775 (968)
T ss_pred             cc--------ccHHHHHHHhhCCCCCcceEEEEEEcCCCCEEEEeCCCCCcHHHHHh
Confidence            21        12346888999999999999999999999999999999999999873

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2.2e-53  Score=508.04  Aligned_cols=457  Identities=35%  Similarity=0.530  Sum_probs=330.4

Q ss_pred             CEEEEEcCCCCCccccCCCCCCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEc
Q 041300           52 RVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSF  131 (716)
Q Consensus        52 ~v~~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  131 (716)
                      +++.|+|++|++.|.++.   ..+++|++|+|++|.+.+..|..|+++++|++|+|++|.+.+.+|..++++++|++|+|
T Consensus       119 ~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  195 (968)
T PLN00113        119 SLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL  195 (968)
T ss_pred             CCCEEECcCCccccccCc---cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeec
Confidence            577777777777665532   34566666666666666666666666666666666666666666666666666666666


Q ss_pred             ccccCccCCCccccCCCCCceeecccccccCCCCccccCCcCCcEEEeecccccccccccccCCCCCceeeCCC------
Q 041300          132 QFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSF------  205 (716)
Q Consensus       132 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~------  205 (716)
                      ++|.+.+.+|..+..+++|++|+|++|.+++..|..|+++++|++|++++|.+++..|..+++++.|+.|+++.      
T Consensus       196 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  275 (968)
T PLN00113        196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP  275 (968)
T ss_pred             cCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeecc
Confidence            66666666666666666666666666666666666666666666666666666666666666666666666543      


Q ss_pred             CCcccCCCCccCEEEeeCCcCcccCCCccccc-cccEEEccCCcCccccCccccCC------------------------
Q 041300          206 LPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNS-MLTWLTLSGNHFTGYLPHNICRG------------------------  260 (716)
Q Consensus       206 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~~------------------------  260 (716)
                      .|..+.++++|++|++++|.+.+.+|..+... +|+.|++++|.+++..|..+..+                        
T Consensus       276 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~  355 (968)
T PLN00113        276 IPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH  355 (968)
T ss_pred             CchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCC
Confidence            23444555555555555555555555444332 45555555555544444444444                        


Q ss_pred             CCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEc
Q 041300          261 GLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNV  340 (716)
Q Consensus       261 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  340 (716)
                      +.|+.|++++|++.+.+|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++..|..|..+++|+.|++
T Consensus       356 ~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  435 (968)
T PLN00113        356 NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDI  435 (968)
T ss_pred             CCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEEC
Confidence            44555555555554445555555555555555555555555666666777777777777777777777777788888888


Q ss_pred             ccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCcc
Q 041300          341 SMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNS  420 (716)
Q Consensus       341 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  420 (716)
                      ++|.+++.+|..+..+++|+.|++++|++.+..|..+ ..++|+.|++++|++++..|..+.++++|+.|+|++|.+.+.
T Consensus       436 s~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  514 (968)
T PLN00113        436 SNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGE  514 (968)
T ss_pred             cCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceee
Confidence            8888887777777788888888888888887777665 458899999999999999999999999999999999999999


Q ss_pred             CchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCCcCC
Q 041300          421 VPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGM  500 (716)
Q Consensus       421 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~  500 (716)
                      +|..+.++++|++|++++|.+++.+|..+..+++|+.||+++|++.+.+|..+..+++|+.|++++|++.+.+|.. ..+
T Consensus       515 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~  593 (968)
T PLN00113        515 IPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAF  593 (968)
T ss_pred             CChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-chh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999988854 333


Q ss_pred             CCCCEEEccCCcc
Q 041300          501 HGLSIIDISDNQL  513 (716)
Q Consensus       501 ~~L~~l~ls~N~l  513 (716)
                      ..+....+.+|+.
T Consensus       594 ~~~~~~~~~~n~~  606 (968)
T PLN00113        594 LAINASAVAGNID  606 (968)
T ss_pred             cccChhhhcCCcc
Confidence            4455556677773

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=4.1e-42  Score=348.08  Aligned_cols=392  Identities=22%  Similarity=0.213  Sum_probs=317.4

Q ss_pred             CcEEECCCCCccccCcccccCCC--CCCEEECcCCcCcccCCccccCCCCCCEEEcccccCccCCCccccCCCCCceeec
Q 041300           78 LVHLDLSLNGFFGTIPSQIGNLT--KLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFL  155 (716)
Q Consensus        78 L~~L~Ls~n~i~~~~~~~~~~l~--~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  155 (716)
                      -+.||.+++.+..+.-..+.+.-  .-+.||+++|+++.+.+..|.++++|+.+++..|.++ .+|.......+|+.|+|
T Consensus        54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L  132 (873)
T KOG4194|consen   54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDL  132 (873)
T ss_pred             ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEee
Confidence            45678888887654333333322  2345777777777777777777777777777777776 45554445555666666


Q ss_pred             ccccccCCCCccccCCcCCcEEEeecccccccccccccCCCCCceeeCCCCCcccCCCCccCEEEeeCCcCcccCCCccc
Q 041300          156 YSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFG  235 (716)
Q Consensus       156 ~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  235 (716)
                      .+|.|+..-.+.++.++.|++|+|+.|.                                          |+....+.|.
T Consensus       133 ~~N~I~sv~se~L~~l~alrslDLSrN~------------------------------------------is~i~~~sfp  170 (873)
T KOG4194|consen  133 RHNLISSVTSEELSALPALRSLDLSRNL------------------------------------------ISEIPKPSFP  170 (873)
T ss_pred             eccccccccHHHHHhHhhhhhhhhhhch------------------------------------------hhcccCCCCC
Confidence            6666665555555555555555555554                                          4444444444


Q ss_pred             c-ccccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEE
Q 041300          236 N-SMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFI  314 (716)
Q Consensus       236 ~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  314 (716)
                      . .++++|+|++|+|+....+.|..+.+|.+|.+++|+++...+..|.+++.|+.|+|..|+|...-.-+|.++++|+.|
T Consensus       171 ~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nl  250 (873)
T KOG4194|consen  171 AKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNL  250 (873)
T ss_pred             CCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhh
Confidence            4 367888888888888888888888899999999999998888889899999999999999987767789999999999


Q ss_pred             EccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCccc
Q 041300          315 DLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLT  394 (716)
Q Consensus       315 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  394 (716)
                      .|..|.+...-.+.|..+.++++|+|+.|+++..-..++.+++.|+.|+|++|.|..+-++.+...++|+.|+|++|+|+
T Consensus       251 klqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~  330 (873)
T KOG4194|consen  251 KLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT  330 (873)
T ss_pred             hhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccc
Confidence            99999999888889999999999999999999888889999999999999999999888999999999999999999999


Q ss_pred             ccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCC---hhhhCCCCCCEEECCCCcCccccch
Q 041300          395 GRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELP---KELEKLVQLSELDASHNLFGGEIPF  471 (716)
Q Consensus       395 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~ls~N~l~~~~p~  471 (716)
                      ...+..|..+..|++|.|++|.++.....+|..+++|+.|||++|.++..+.   ..|.+++.|+.|++.+|++..+...
T Consensus       331 ~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~kr  410 (873)
T KOG4194|consen  331 RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKR  410 (873)
T ss_pred             cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchh
Confidence            8888889999999999999999998878889999999999999999987654   3578899999999999999988888


Q ss_pred             hccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCcc
Q 041300          472 QICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQL  513 (716)
Q Consensus       472 ~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l  513 (716)
                      +|.+++.|+.|||.+|.|..+.|++|..| .|+.|-+..-.+
T Consensus       411 Afsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssf  451 (873)
T KOG4194|consen  411 AFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSF  451 (873)
T ss_pred             hhccCcccceecCCCCcceeecccccccc-hhhhhhhcccce
Confidence            99999999999999999999999999998 788887754443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=5.3e-41  Score=340.02  Aligned_cols=389  Identities=23%  Similarity=0.217  Sum_probs=308.8

Q ss_pred             EEEEEcCCCCCccccCCCCCCC--CCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEE
Q 041300           53 VTNISLRNTGLSGTLRDFSFSS--FPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLS  130 (716)
Q Consensus        53 v~~l~l~~~~l~~~~~~~~f~~--l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  130 (716)
                      ...+|.+++++.. ++...+..  .+.-+.||+|+|+++.+.+..|.++++|+.+++..|.++ .+|...+...+|+.|+
T Consensus        54 ~~lldcs~~~lea-~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~  131 (873)
T KOG4194|consen   54 TRLLDCSDRELEA-IDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLD  131 (873)
T ss_pred             ceeeecCcccccc-ccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEe
Confidence            4567777777752 22222322  234567999999999999999999999999999999998 7887777778899999


Q ss_pred             cccccCccCCCccccCCCCCceeecccccccCCCCccccCCcCCcEEEeecccccccccccccCCCCCceeeCCCCCccc
Q 041300          131 FQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSV  210 (716)
Q Consensus       131 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~  210 (716)
                      |.+|.|+.+-.+++..++.|+.|||+.|.|+.+.-..|..-.++++|+|++|.|+......|.                 
T Consensus       132 L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~-----------------  194 (873)
T KOG4194|consen  132 LRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFD-----------------  194 (873)
T ss_pred             eeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccccccccccc-----------------
Confidence            999999988888999999999999999999988778899889999999999999865544444                 


Q ss_pred             CCCCccCEEEeeCCcCcccCCCccc-cccccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcE
Q 041300          211 GNLTNLKSLGLMDNHLSGSIPPSFG-NSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIR  289 (716)
Q Consensus       211 ~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~  289 (716)
                       .+.+|..|.|+.|+++...+..|. .++|+.|+|..|+|.-..--.|.++++|+.|.+..|.+.......|..|.++++
T Consensus       195 -~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~  273 (873)
T KOG4194|consen  195 -SLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEH  273 (873)
T ss_pred             -ccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccce
Confidence             444788888888888877667776 347888888888887655566777888888888888888777777778888888


Q ss_pred             EEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCcc
Q 041300          290 VRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHI  369 (716)
Q Consensus       290 L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  369 (716)
                      |+|+.|+++......+.+++.|+.|+||+|.|..+.++.|..+++|+.|+|++|+|+...+..|..+.+|++|+|++|++
T Consensus       274 l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi  353 (873)
T KOG4194|consen  274 LNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSI  353 (873)
T ss_pred             eecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccch
Confidence            88888888877777777788888888888888887778888888888888888888877777888888888888888888


Q ss_pred             ccccCcccCCCCCCcEEEccCCcccccCCc---ccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCC
Q 041300          370 VGEIPKELGKLNSLTKLILRGNQLTGRLPT---EIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELP  446 (716)
Q Consensus       370 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  446 (716)
                      ...-...|..+++|+.|||++|.++..+.+   .|.++++|+.|+|.+|++..+...+|.++..|+.|||.+|.|..+-|
T Consensus       354 ~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~  433 (873)
T KOG4194|consen  354 DHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQP  433 (873)
T ss_pred             HHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecc
Confidence            766666777788888888888887765544   35677778888888888876666777788888888888888777777


Q ss_pred             hhhhCCCCCCEEECCC
Q 041300          447 KELEKLVQLSELDASH  462 (716)
Q Consensus       447 ~~~~~l~~L~~L~ls~  462 (716)
                      .+|..+ .|++|.+..
T Consensus       434 nAFe~m-~Lk~Lv~nS  448 (873)
T KOG4194|consen  434 NAFEPM-ELKELVMNS  448 (873)
T ss_pred             cccccc-hhhhhhhcc
Confidence            777777 677665543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=3.7e-41  Score=327.13  Aligned_cols=445  Identities=28%  Similarity=0.419  Sum_probs=322.3

Q ss_pred             EEEEEcCCCCCccccCCCCCCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcc
Q 041300           53 VTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQ  132 (716)
Q Consensus        53 v~~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  132 (716)
                      +..+.+++|++. .+ .....++..|.+|++++|++. ..|.+++.+..++.|+.++|+++ .+|..++.+.+|..|+.+
T Consensus        47 l~~lils~N~l~-~l-~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s  122 (565)
T KOG0472|consen   47 LQKLILSHNDLE-VL-REDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCS  122 (565)
T ss_pred             hhhhhhccCchh-hc-cHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcc
Confidence            567888899886 33 456788999999999999998 56778999999999999999998 889999999999999999


Q ss_pred             cccCccCCCccccCCCCCceeecccccccCCCCccccCCcCCcEEEeecccccccccccccCCCCCceeeC-----CCCC
Q 041300          133 FNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDL-----SFLP  207 (716)
Q Consensus       133 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l-----~~~~  207 (716)
                      +|.+. .+|++++.+..|+.|+..+|+++ ..|+.+.++.+|..|++.+|.+....+..+. ++.|+++|.     ..+|
T Consensus       123 ~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~tlP  199 (565)
T KOG0472|consen  123 SNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLETLP  199 (565)
T ss_pred             cccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhhcCC
Confidence            99998 67888999999999999999998 5678888999999999999999865555444 888888885     4588


Q ss_pred             cccCCCCccCEEEeeCCcCcccCCCcccc-ccccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCC
Q 041300          208 LSVGNLTNLKSLGLMDNHLSGSIPPSFGN-SMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTS  286 (716)
Q Consensus       208 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~  286 (716)
                      ..++.+.+|..|++..|++. .+| .|+. ..|.+|+++.|+|.-........+..+..|++.+|++. ..|+.+..+.+
T Consensus       200 ~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrs  276 (565)
T KOG0472|consen  200 PELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRS  276 (565)
T ss_pred             hhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhh
Confidence            89999999999999999998 455 4544 47899999999987544444458888999999999988 67888888889


Q ss_pred             CcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCC--------------------------------------C
Q 041300          287 LIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISS--------------------------------------N  328 (716)
Q Consensus       287 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~--------------------------------------~  328 (716)
                      |..||+++|.|++. |..++++ +|+.|.+.+|.+..+-.+                                      .
T Consensus       277 L~rLDlSNN~is~L-p~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~  354 (565)
T KOG0472|consen  277 LERLDLSNNDISSL-PYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSES  354 (565)
T ss_pred             hhhhcccCCccccC-Ccccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCc
Confidence            99999999998864 5567888 888899888887421000                                      0


Q ss_pred             C---CCCCCCCEEEcccCcCcccCcccccCC--CCCCEEEccCCccccccCcccCCCCCCcE-EEccCCcccccCCcccC
Q 041300          329 W---GKCPKLGTLNVSMNNITGGIPREIGNM--SQLQALDLSLNHIVGEIPKELGKLNSLTK-LILRGNQLTGRLPTEIG  402 (716)
Q Consensus       329 ~---~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~-L~L~~N~l~~~~~~~~~  402 (716)
                      |   ....+.+.|+++.-+++......|..-  .-....+++.|++. ++|..+..+..+.+ +.+++|.+. .+|..++
T Consensus       355 ~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~  432 (565)
T KOG0472|consen  355 FPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELS  432 (565)
T ss_pred             ccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHH
Confidence            0   012234556666655553322222211  12555666666665 55555555444333 334444443 5666666


Q ss_pred             CCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEE
Q 041300          403 SLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKL  482 (716)
Q Consensus       403 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L  482 (716)
                      .+++|..|+|++|.+. .+|..++.+..|+.|++|.|++. .+|.....+..++.+-.++|++....|..+.+|.+|..|
T Consensus       433 ~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tL  510 (565)
T KOG0472|consen  433 QLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTL  510 (565)
T ss_pred             hhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhccee
Confidence            6666666666666665 45666666666666666666665 466666555566666666666665555556666667777


Q ss_pred             ECcCCcCcccCCcCCcCCCCCCEEEccCCccc
Q 041300          483 NLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQ  514 (716)
Q Consensus       483 ~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~  514 (716)
                      ||.+|.+. .+|..+.+|++|++|++.+|+|.
T Consensus       511 DL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  511 DLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             ccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            77766665 34555666667777777777665

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=6e-40  Score=318.75  Aligned_cols=450  Identities=31%  Similarity=0.404  Sum_probs=361.3

Q ss_pred             CCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcccccCccCCCccccCCCCCc
Q 041300           72 FSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIE  151 (716)
Q Consensus        72 f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  151 (716)
                      +-.-..|..|++++|.+....+ .+.++..|.+|++++|++. ..|++++.+..++.|+.++|++. .+|+++..+.+|.
T Consensus        41 wW~qv~l~~lils~N~l~~l~~-dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~  117 (565)
T KOG0472|consen   41 WWEQVDLQKLILSHNDLEVLRE-DLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLV  117 (565)
T ss_pred             hhhhcchhhhhhccCchhhccH-hhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhh
Confidence            3344568899999999985544 5889999999999999998 78889999999999999999998 7899999999999


Q ss_pred             eeecccccccCCCCccccCCcCCcEEEeecccccccccccccCCCCCceeeCCC-----CCcccCCCCccCEEEeeCCcC
Q 041300          152 ELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSF-----LPLSVGNLTNLKSLGLMDNHL  226 (716)
Q Consensus       152 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~-----~~~~~~~l~~L~~L~l~~n~l  226 (716)
                      .|++++|.+. ..|+.++.+-.|..|+..+|+++ ..|.++..+.++..+++..     .|....+|+.|++|+...|.+
T Consensus       118 ~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L  195 (565)
T KOG0472|consen  118 KLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLL  195 (565)
T ss_pred             hhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhh
Confidence            9999999998 67788889999999999999998 5677777777777776643     455555688888888888887


Q ss_pred             cccCCCcccc-ccccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhh
Q 041300          227 SGSIPPSFGN-SMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEAL  305 (716)
Q Consensus       227 ~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~  305 (716)
                      .. +|+.++. .+|..|+|..|.|.. .| .|.+...|.+|.++.|.+.-...+...++.++..||+.+|+++. .|+.+
T Consensus       196 ~t-lP~~lg~l~~L~~LyL~~Nki~~-lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke-~Pde~  271 (565)
T KOG0472|consen  196 ET-LPPELGGLESLELLYLRRNKIRF-LP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKE-VPDEI  271 (565)
T ss_pred             hc-CChhhcchhhhHHHHhhhccccc-CC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccccc-CchHH
Confidence            74 4444444 478888888888874 34 77788888888888888884444455588888888888888884 45666


Q ss_pred             CCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCccc-------------------------------------
Q 041300          306 GLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGG-------------------------------------  348 (716)
Q Consensus       306 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-------------------------------------  348 (716)
                      ..+.+|..||+|+|.+++ .|.+++++ +|+.|.+.+|.+...                                     
T Consensus       272 clLrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t  349 (565)
T KOG0472|consen  272 CLLRSLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMT  349 (565)
T ss_pred             HHhhhhhhhcccCCcccc-CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCC
Confidence            677888888888888875 45677888 888888888875410                                     


Q ss_pred             -Ccc---cccCCCCCCEEEccCCccccccCcccCCCCC---CcEEEccCCcccccCCcccCCCCCCCE-EEccCCcCCcc
Q 041300          349 -IPR---EIGNMSQLQALDLSLNHIVGEIPKELGKLNS---LTKLILRGNQLTGRLPTEIGSLIELEY-LDFSANKFNNS  420 (716)
Q Consensus       349 -~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~---L~~L~L~~N~l~~~~~~~~~~l~~L~~-L~Ls~N~l~~~  420 (716)
                       .+.   ....+.+.+.|+++.-+++ .+|.....-..   .+..+++.|++. .+|..+..+..+.. +++++|.+ +.
T Consensus       350 ~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sf  426 (565)
T KOG0472|consen  350 LPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SF  426 (565)
T ss_pred             CCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-cc
Confidence             000   1122446677888877777 55655433333   778888999887 67777766666554 45566655 47


Q ss_pred             CchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCCcCC
Q 041300          421 VPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGM  500 (716)
Q Consensus       421 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~  500 (716)
                      +|..++.+++|..|+|++|.+. .+|.+++.+..|+.||+++|++. .+|..+..+..++.+-.++|++..+.|+.+.+|
T Consensus       427 v~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm  504 (565)
T KOG0472|consen  427 VPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNM  504 (565)
T ss_pred             chHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhh
Confidence            8889999999999999999987 78999999999999999999998 789988888889999999999998888889999


Q ss_pred             CCCCEEEccCCcccccCCCccccCCCCcccccCCCCC
Q 041300          501 HGLSIIDISDNQLQGPVPNSTAFRNAPVEALEGNKEL  537 (716)
Q Consensus       501 ~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~~  537 (716)
                      .+|++||+.+|.++..+|..+...+.....+.||+..
T Consensus       505 ~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  505 RNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence            9999999999999999998888888888888898755

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=100.00  E-value=2.7e-35  Score=300.39  Aligned_cols=364  Identities=31%  Similarity=0.389  Sum_probs=239.6

Q ss_pred             CEEEEEcCCCCCccccCCCCCCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEc
Q 041300           52 RVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSF  131 (716)
Q Consensus        52 ~v~~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  131 (716)
                      -|+.+|+++|+++|.--+.+...+++++.|.|...++. .+|+.++.+.+|++|.+++|++. .+-..++.|+.|+.+++
T Consensus         8 FVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~   85 (1255)
T KOG0444|consen    8 FVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIV   85 (1255)
T ss_pred             eeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhh
Confidence            36667777777775443555566667777777666664 45666777777777777777765 44455666677777777


Q ss_pred             ccccCc-cCCCccccCCCCCceeecccccccCCCCccccCCcCCcEEEeecccccccccccccCCCCCceeeCCCCCccc
Q 041300          132 QFNELD-GSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSV  210 (716)
Q Consensus       132 ~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~  210 (716)
                      ..|++. ..+|.++.++..|+.|||++|+++ ..|..+..-+++-.|+|++|+|.. +|..                 -+
T Consensus        86 R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Iet-IPn~-----------------lf  146 (1255)
T KOG0444|consen   86 RDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIET-IPNS-----------------LF  146 (1255)
T ss_pred             hccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCcccc-CCch-----------------HH
Confidence            776654 245666666777777777777766 556666666666677777776652 2211                 12


Q ss_pred             CCCCccCEEEeeCCcCcccCCCccccccccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEE
Q 041300          211 GNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRV  290 (716)
Q Consensus       211 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L  290 (716)
                      .+++.|-.|||++|++....|..-...+|++|+|++|.+...--.                        .+..|++|+.|
T Consensus       147 inLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLr------------------------QLPsmtsL~vL  202 (1255)
T KOG0444|consen  147 INLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLR------------------------QLPSMTSLSVL  202 (1255)
T ss_pred             HhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHh------------------------cCccchhhhhh
Confidence            344466666666676664333333333566666666665432222                        22344555555


Q ss_pred             EccCCcCC-CccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCcc
Q 041300          291 RLNGNNLT-GNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHI  369 (716)
Q Consensus       291 ~l~~n~l~-~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  369 (716)
                      .+++.+-+ ..+|.++..+.+|..+|+|.|.+. ..|..+..+++|+.|+||+|+|+.. .-..+.-.+|++|+++.|++
T Consensus       203 hms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL-~~~~~~W~~lEtLNlSrNQL  280 (1255)
T KOG0444|consen  203 HMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITEL-NMTEGEWENLETLNLSRNQL  280 (1255)
T ss_pred             hcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeee-eccHHHHhhhhhhccccchh
Confidence            55554322 235556666677777777777765 4566666777777777777777633 23344456777888888888


Q ss_pred             ccccCcccCCCCCCcEEEccCCccc-ccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChh
Q 041300          370 VGEIPKELGKLNSLTKLILRGNQLT-GRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKE  448 (716)
Q Consensus       370 ~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  448 (716)
                      + .+|..+..++.|+.|++.+|+++ .-+|..++.+.+|+++..++|.+. .+|+.++.+..|+.|.|+.|++. .+|++
T Consensus       281 t-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPea  357 (1255)
T KOG0444|consen  281 T-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEA  357 (1255)
T ss_pred             c-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhh
Confidence            7 67788888888888888888765 236777888888888888888876 77888888888888888888876 67888


Q ss_pred             hhCCCCCCEEECCCCcC
Q 041300          449 LEKLVQLSELDASHNLF  465 (716)
Q Consensus       449 ~~~l~~L~~L~ls~N~l  465 (716)
                      +.-++.|+.||+..|.-
T Consensus       358 IHlL~~l~vLDlreNpn  374 (1255)
T KOG0444|consen  358 IHLLPDLKVLDLRENPN  374 (1255)
T ss_pred             hhhcCCcceeeccCCcC
Confidence            88888888888887753

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.98  E-value=3.9e-35  Score=299.26  Aligned_cols=371  Identities=26%  Similarity=0.382  Sum_probs=258.1

Q ss_pred             CCCCCEEECcCCcCc-ccCCccccCCCCCCEEEcccccCccCCCccccCCCCCceeecccccccCCCCccccCCcCCcEE
Q 041300           99 LTKLSYISLDSNQLS-GKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRL  177 (716)
Q Consensus        99 l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  177 (716)
                      ++-.+-.|+++|.++ +..|.....+++++.|.|....+. .+|+.++.+.+|++|.+++|++.. +-..++.++.|+.+
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~-vhGELs~Lp~LRsv   83 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLIS-VHGELSDLPRLRSV   83 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHh-hhhhhccchhhHHH
Confidence            344556677777776 456666666677777776666665 566666666666666666666652 33445555666666


Q ss_pred             EeecccccccccccccCCCCCceeeCCCCCcccCCCCccCEEEeeCCcCcccCCCccccccccEEEccCCcCccccCccc
Q 041300          178 YINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNI  257 (716)
Q Consensus       178 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~  257 (716)
                      .+.+|++..                 +.+|..+..+..|+.|||+.|++.                       . .|..+
T Consensus        84 ~~R~N~LKn-----------------sGiP~diF~l~dLt~lDLShNqL~-----------------------E-vP~~L  122 (1255)
T KOG0444|consen   84 IVRDNNLKN-----------------SGIPTDIFRLKDLTILDLSHNQLR-----------------------E-VPTNL  122 (1255)
T ss_pred             hhhcccccc-----------------CCCCchhcccccceeeecchhhhh-----------------------h-cchhh
Confidence            665555431                 223333444444555555555544                       2 34444


Q ss_pred             cCCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCE
Q 041300          258 CRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGT  337 (716)
Q Consensus       258 ~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  337 (716)
                      ....++-.|++++|+|..+.-.-|.+++.|-.|+|++|++...+|. ...+..|++|+|++|.+.-.--..+-.+++|+.
T Consensus       123 E~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ-~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~v  201 (1255)
T KOG0444|consen  123 EYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQ-IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSV  201 (1255)
T ss_pred             hhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHH-HHHHhhhhhhhcCCChhhHHHHhcCccchhhhh
Confidence            4445555555555555533334455666677777777777644433 455667777777777665322222334556677


Q ss_pred             EEcccCcCc-ccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCc
Q 041300          338 LNVSMNNIT-GGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANK  416 (716)
Q Consensus       338 L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~  416 (716)
                      |.+++.+-+ .-+|.++..+.+|..+|++.|.+. .+|+.+..+++|+.|+|++|+|+ .+....+...+|+.|+||.|+
T Consensus       202 Lhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQ  279 (1255)
T KOG0444|consen  202 LHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQ  279 (1255)
T ss_pred             hhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccch
Confidence            777765543 246778888889999999999987 78888889999999999999988 455566677789999999999


Q ss_pred             CCccCchhhcCcCCCCEEECcCCcCcc-cCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCc
Q 041300          417 FNNSVPESLGNLLKLHYLGLSNNQFVL-ELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPN  495 (716)
Q Consensus       417 l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~  495 (716)
                      ++ .+|.++..+++|+.|++.+|+++. .+|..++++.+|+++..++|++. .+|+.++.+..|+.|.|+.|++- ..|+
T Consensus       280 Lt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPe  356 (1255)
T KOG0444|consen  280 LT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPE  356 (1255)
T ss_pred             hc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echh
Confidence            98 789999999999999999998863 47888999999999999999987 88999999999999999999987 4588


Q ss_pred             CCcCCCCCCEEEccCCcccccCC
Q 041300          496 CFEGMHGLSIIDISDNQLQGPVP  518 (716)
Q Consensus       496 ~~~~~~~L~~l~ls~N~l~~~~p  518 (716)
                      .+.-++.|..||+..|+=--.+|
T Consensus       357 aIHlL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  357 AIHLLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             hhhhcCCcceeeccCCcCccCCC
Confidence            88888999999999987443333

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=1.7e-34  Score=308.36  Aligned_cols=415  Identities=28%  Similarity=0.362  Sum_probs=212.8

Q ss_pred             EEEEEcCCCCCccccCCCCCCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcc
Q 041300           53 VTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQ  132 (716)
Q Consensus        53 v~~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  132 (716)
                      +..||+++|.+.. . +..+..+++|+.|+++.|.|. ..|.+..++.+|++|+|.+|.+. ..|..+..+.+|++||++
T Consensus        47 L~~l~lsnn~~~~-f-p~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS  122 (1081)
T KOG0618|consen   47 LKSLDLSNNQISS-F-PIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLS  122 (1081)
T ss_pred             eEEeecccccccc-C-CchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccc
Confidence            5566666666542 1 234455667777777777665 45566667777777777777766 667777777777777777


Q ss_pred             cccCccCCCccccCCCCCceeecccccccCCCCccccCCcCCcEEEeecccccccccccccCCCCCceeeCCCCCc---c
Q 041300          133 FNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPL---S  209 (716)
Q Consensus       133 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~~~~---~  209 (716)
                      +|++. .+|..+..++.++.+..++|.-...    ++... ++.+++..|.+.+.++..+..++.  .+||..+..   .
T Consensus       123 ~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~d  194 (1081)
T KOG0618|consen  123 FNHFG-PIPLVIEVLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLD  194 (1081)
T ss_pred             hhccC-CCchhHHhhhHHHHHhhhcchhhhh----hcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhhhhh
Confidence            77765 5566666666666666666621111    12221 566666666666666666666655  456554332   2


Q ss_pred             cCCCCccCEEEeeCCcCcccCCCccccccccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcE
Q 041300          210 VGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIR  289 (716)
Q Consensus       210 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~  289 (716)
                      +.++.+|+.|....|.+...   ....++++.|+.++|.++...+.  ....+|+.++++.|++++. |+++..+.+|+.
T Consensus       195 ls~~~~l~~l~c~rn~ls~l---~~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~~l-p~wi~~~~nle~  268 (1081)
T KOG0618|consen  195 LSNLANLEVLHCERNQLSEL---EISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLSNL-PEWIGACANLEA  268 (1081)
T ss_pred             hhhccchhhhhhhhcccceE---EecCcchheeeeccCcceeeccc--cccccceeeecchhhhhcc-hHHHHhcccceE
Confidence            34455555555555555421   11223455566666655522211  1233455666666666533 355556666666


Q ss_pred             EEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCC-CCEEEccCCc
Q 041300          290 VRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQ-LQALDLSLNH  368 (716)
Q Consensus       290 L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~n~  368 (716)
                      ++..+|+++ ..|..+....+|+.|++.+|.+.. +|.....+..|++|+|..|+|....+..+.-+.. |..|+.+.|.
T Consensus       269 l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~y-ip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~  346 (1081)
T KOG0618|consen  269 LNANHNRLV-ALPLRISRITSLVSLSAAYNELEY-IPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNK  346 (1081)
T ss_pred             ecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhh-CCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcc
Confidence            666666653 233334444555555555555542 2334444555556666555555333322222222 3444444444


Q ss_pred             cccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChh
Q 041300          369 IVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKE  448 (716)
Q Consensus       369 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  448 (716)
                      +.......=..++.|+.|++.+|.+++..-+.+.+...|+.|+|++|++.......+.++..|+.|+||+|+++ .+|..
T Consensus       347 l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~t  425 (1081)
T KOG0618|consen  347 LSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDT  425 (1081)
T ss_pred             ccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHH
Confidence            43111111112334444444444444433334444444455555555444333333444444444555555444 34444


Q ss_pred             hhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCc
Q 041300          449 LEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLS  490 (716)
Q Consensus       449 ~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~  490 (716)
                      +..+..|++|...+|++. ..| .+..++.|+.+|+|.|+|+
T Consensus       426 va~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~  465 (1081)
T KOG0618|consen  426 VANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLS  465 (1081)
T ss_pred             HHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhh
Confidence            444444444444444444 333 4444444555555544444

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=4.6e-34  Score=305.13  Aligned_cols=455  Identities=25%  Similarity=0.331  Sum_probs=287.5

Q ss_pred             EEEEEcCCCCCccccCCCCC--CCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEE
Q 041300           53 VTNISLRNTGLSGTLRDFSF--SSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLS  130 (716)
Q Consensus        53 v~~l~l~~~~l~~~~~~~~f--~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  130 (716)
                      ++.|+++.|-+-. .+ ..|  +.++ |+.||||+|.+. ..|..+..+.+|+.|+++.|.|. ..|.+..++.+|++|+
T Consensus        23 ~~~ln~~~N~~l~-~p-l~~~~~~v~-L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~ln   97 (1081)
T KOG0618|consen   23 LQILNLRRNSLLS-RP-LEFVEKRVK-LKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLN   97 (1081)
T ss_pred             HHhhhcccccccc-Cc-hHHhhheee-eEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhhe
Confidence            5666666665431 11 111  1233 777788777765 56667777777788888887777 5667777777788888


Q ss_pred             cccccCccCCCccccCCCCCceeecccccccCCCCccccCCcCCcEEEeecccccccccccccCCCCCceeeCCC-----
Q 041300          131 FQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSF-----  205 (716)
Q Consensus       131 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~-----  205 (716)
                      |..|.+. ..|..+..+++|+.|+++.|.+. .+|..+..+..+..+..++|......    +... ++.+++..     
T Consensus        98 L~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~l----g~~~-ik~~~l~~n~l~~  170 (1081)
T KOG0618|consen   98 LKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRL----GQTS-IKKLDLRLNVLGG  170 (1081)
T ss_pred             eccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhh----cccc-chhhhhhhhhccc
Confidence            8777776 66777777777788888877775 66777777777777777777211111    1111 22222211     


Q ss_pred             -CCcccCCCCccCEEEeeCCcCcccCCCccccccccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccC
Q 041300          206 -LPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNC  284 (716)
Q Consensus       206 -~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l  284 (716)
                       ++..+..++.  .|+|++|.+.  .-+.-....|+.+....|++....    ...+.++.|+.++|.+....+..  .-
T Consensus       171 ~~~~~i~~l~~--~ldLr~N~~~--~~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~~p--~p  240 (1081)
T KOG0618|consen  171 SFLIDIYNLTH--QLDLRYNEME--VLDLSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTLDVHP--VP  240 (1081)
T ss_pred             chhcchhhhhe--eeecccchhh--hhhhhhccchhhhhhhhcccceEE----ecCcchheeeeccCcceeecccc--cc
Confidence             2222333333  3555555544  111111123455555555444221    12345566666666655332221  12


Q ss_pred             CCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEc
Q 041300          285 TSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDL  364 (716)
Q Consensus       285 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  364 (716)
                      .+|+++++++|++++.+ +.+..+.+|+.++..+|++. .+|..+....+|+.|.+.+|.+. -+|.....+++|++|+|
T Consensus       241 ~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL  317 (1081)
T KOG0618|consen  241 LNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDL  317 (1081)
T ss_pred             ccceeeecchhhhhcch-HHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeee
Confidence            45666666666666544 66666666666666666663 34455555566666666666665 34444555666666666


Q ss_pred             cCCccccccCcc-cCCCC-CCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCc
Q 041300          365 SLNHIVGEIPKE-LGKLN-SLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFV  442 (716)
Q Consensus       365 ~~n~l~~~~~~~-~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  442 (716)
                      ..|.|. ..|+. +.-+. +|..|+.+.|++.......=..++.|+.|++.+|.+++..-..+.+..+|+.|+|++|++.
T Consensus       318 ~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~  396 (1081)
T KOG0618|consen  318 QSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN  396 (1081)
T ss_pred             hhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc
Confidence            666665 33332 22222 2555666666665322111224567899999999999988888999999999999999998


Q ss_pred             ccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCccccc-CCCcc
Q 041300          443 LELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGP-VPNST  521 (716)
Q Consensus       443 ~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~-~p~~~  521 (716)
                      ......+.++..|++|+||+|+++ .+|..+..++.|++|...+|+|.. .| .+..++.|+.+|+|.|+|+-. +|...
T Consensus       397 ~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~-fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~  473 (1081)
T KOG0618|consen  397 SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLS-FP-ELAQLPQLKVLDLSCNNLSEVTLPEAL  473 (1081)
T ss_pred             cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceee-ch-hhhhcCcceEEecccchhhhhhhhhhC
Confidence            666667889999999999999999 788999999999999999999985 45 788999999999999999753 33332


Q ss_pred             ccCCCCcccccCCCC
Q 041300          522 AFRNAPVEALEGNKE  536 (716)
Q Consensus       522 ~~~~~~~~~~~~n~~  536 (716)
                      ..++..-..+.||.+
T Consensus       474 p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  474 PSPNLKYLDLSGNTR  488 (1081)
T ss_pred             CCcccceeeccCCcc
Confidence            334455556667764

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.94  E-value=2e-29  Score=245.48  Aligned_cols=429  Identities=21%  Similarity=0.222  Sum_probs=267.8

Q ss_pred             CCCCCcceee-----eeeCCCC----------CEEEEEcCCCCCccccCCCCCCCCCCCcEEECCCCCccccCcccccCC
Q 041300           35 SKISPCAWYG-----ISCNDAG----------RVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNL   99 (716)
Q Consensus        35 ~~~~~c~w~g-----v~c~~~~----------~v~~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l   99 (716)
                      .+-.||+..+     |.|...|          ..+.|+|..|+|+ .|++.+|+.+++|+.||||+|+|+.+.|++|.++
T Consensus        36 ~CP~pC~Cs~~~g~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL  114 (498)
T KOG4237|consen   36 ACPAPCTCSDVEGGIVDCRGKGLTEVPANLPPETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGL  114 (498)
T ss_pred             cCCCCcccCCCCCceEEccCCCcccCcccCCCcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhh
Confidence            3446787665     6776533          5678888888887 6778888888888888888888888888888888


Q ss_pred             CCCCEEECcC-CcCcccCCccccCCCCCCEEEcccccCccCCCccccCCCCCceeecccccccCCCCccccCCcCCcEEE
Q 041300          100 TKLSYISLDS-NQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLY  178 (716)
Q Consensus       100 ~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  178 (716)
                      ++|..|-+.+ |+|+......|++|..|+.|.+.-|++.-...+.|..+++|..|.+..|.+..+...+|..+..++++.
T Consensus       115 ~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlh  194 (498)
T KOG4237|consen  115 ASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLH  194 (498)
T ss_pred             HhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHh
Confidence            8887776665 888866667788888888888888888877778888888888888888888866666888888888888


Q ss_pred             eecccccccccccccCCCCCceeeCCCCCcccCCCCccCEEEeeCCcCcccCCCccccc--cccEEEccCCcCccccC-c
Q 041300          179 INNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNS--MLTWLTLSGNHFTGYLP-H  255 (716)
Q Consensus       179 L~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~--~L~~L~L~~n~l~~~~~-~  255 (716)
                      +..|.+-     ...+++.+.. ++...|..++.........+.++++....+..|...  .+..--.+.+...+..| .
T Consensus       195 lA~np~i-----cdCnL~wla~-~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~  268 (498)
T KOG4237|consen  195 LAQNPFI-----CDCNLPWLAD-DLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAK  268 (498)
T ss_pred             hhcCccc-----cccccchhhh-HHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHH
Confidence            8877632     2222222211 123345555555555555555555554444333322  11111112222222333 3


Q ss_pred             cccCCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCC
Q 041300          256 NICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKL  335 (716)
Q Consensus       256 ~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  335 (716)
                      .|..++.|+.+++++|+++++-+.+|.....++.|.|..|++.......|.++..|++|+|.+|+|+...|..|..+..|
T Consensus       269 cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l  348 (498)
T KOG4237|consen  269 CFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSL  348 (498)
T ss_pred             HHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccccccee
Confidence            46667777788888888777777777777778888888887777777777777778888888888877777777777777


Q ss_pred             CEEEcccCcCcccCcccccCCCCCCEE--EccCCccccccCcccCCCCCCcEEEccCCccccc---CCcc---------c
Q 041300          336 GTLNVSMNNITGGIPREIGNMSQLQAL--DLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGR---LPTE---------I  401 (716)
Q Consensus       336 ~~L~L~~n~l~~~~~~~~~~l~~L~~L--~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~---------~  401 (716)
                      .+|+|-.|.+---        -.|.+|  .|..+...|..|  -+....++.+.++...+...   .|+.         -
T Consensus       349 ~~l~l~~Np~~Cn--------C~l~wl~~Wlr~~~~~~~~~--Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP  418 (498)
T KOG4237|consen  349 STLNLLSNPFNCN--------CRLAWLGEWLRKKSVVGNPR--CQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCP  418 (498)
T ss_pred             eeeehccCcccCc--------cchHHHHHHHhhCCCCCCCC--CCCCchhccccchhccccccccCCccccCCCCCCCCC
Confidence            7777776654310        000000  011111111111  11112233444443333210   1111         1


Q ss_pred             CCCCCCCE-EEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCC
Q 041300          402 GSLIELEY-LDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLE  480 (716)
Q Consensus       402 ~~l~~L~~-L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~  480 (716)
                      ..++-+.+ ...|+..+. .+|..+.  ..-..|++.+|.++ .+|.+  .+..| .+|+++|++.......|.++..|.
T Consensus       419 ~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~  491 (498)
T KOG4237|consen  419 PPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLS  491 (498)
T ss_pred             CCcchhhhhHhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhh
Confidence            12222322 233333333 4443221  24566788888887 45655  45566 788888888777777788888888


Q ss_pred             EEECcCC
Q 041300          481 KLNLSHN  487 (716)
Q Consensus       481 ~L~ls~N  487 (716)
                      +|-+++|
T Consensus       492 tlilsyn  498 (498)
T KOG4237|consen  492 TLILSYN  498 (498)
T ss_pred             eeEEecC
Confidence            8888776

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.93  E-value=6.5e-28  Score=234.99  Aligned_cols=415  Identities=23%  Similarity=0.234  Sum_probs=270.6

Q ss_pred             EEEEcCCCCCccccCCCCCCCC-CCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcc
Q 041300           54 TNISLRNTGLSGTLRDFSFSSF-PQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQ  132 (716)
Q Consensus        54 ~~l~l~~~~l~~~~~~~~f~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  132 (716)
                      ..++-++.++. .++    .++ +.-..++|..|.|+.+.|.+|..+++|+.||||+|.|+.+-|++|.++++|..|-+.
T Consensus        49 ~~VdCr~~GL~-eVP----~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvly  123 (498)
T KOG4237|consen   49 GIVDCRGKGLT-EVP----ANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLY  123 (498)
T ss_pred             ceEEccCCCcc-cCc----ccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhh
Confidence            55777777776 332    123 356789999999999999999999999999999999999999999999999887776


Q ss_pred             c-ccCccCCCccccCCCCCceeecccccccCCCCccccCCcCCcEEEeecccccccccccccCCCCCceeeCCCCC-ccc
Q 041300          133 F-NELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLP-LSV  210 (716)
Q Consensus       133 ~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~~~-~~~  210 (716)
                      + |+|+......|.+|..|+.|.+.-|++.-+..+.|..+++|..|.+.+|.+....-..+..+..++.+-+...| ...
T Consensus       124 g~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icd  203 (498)
T KOG4237|consen  124 GNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICD  203 (498)
T ss_pred             cCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccc
Confidence            6 99997777889999999999999999998889999999999999999999886666677777766665555555 333


Q ss_pred             CCCCccCEEEeeCCcCcccCCCcccc-ccccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcE
Q 041300          211 GNLTNLKSLGLMDNHLSGSIPPSFGN-SMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIR  289 (716)
Q Consensus       211 ~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~  289 (716)
                      .+++.+...... +.+      .++. ....-..+.++++....+..|..                       .+.++..
T Consensus       204 CnL~wla~~~a~-~~i------etsgarc~~p~rl~~~Ri~q~~a~kf~c-----------------------~~esl~s  253 (498)
T KOG4237|consen  204 CNLPWLADDLAM-NPI------ETSGARCVSPYRLYYKRINQEDARKFLC-----------------------SLESLPS  253 (498)
T ss_pred             cccchhhhHHhh-chh------hcccceecchHHHHHHHhcccchhhhhh-----------------------hHHhHHH
Confidence            333333322111 111      1100 01111222233332222211110                       0011111


Q ss_pred             -EEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCc
Q 041300          290 -VRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNH  368 (716)
Q Consensus       290 -L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  368 (716)
                       +....+....-+...|..+++|++|+|++|+++.+.+.+|.+...++.|.|..|++...-...|.++..|++|+|.+|+
T Consensus       254 ~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~  333 (498)
T KOG4237|consen  254 RLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQ  333 (498)
T ss_pred             hhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCe
Confidence             1111111222233456777777777777777777777777777777777777777766666667777777777777777


Q ss_pred             cccccCcccCCCCCCcEEEccCCcccc-----------------cCCcccCCCCCCCEEEccCCcCCc---cCchhhc--
Q 041300          369 IVGEIPKELGKLNSLTKLILRGNQLTG-----------------RLPTEIGSLIELEYLDFSANKFNN---SVPESLG--  426 (716)
Q Consensus       369 l~~~~~~~~~~l~~L~~L~L~~N~l~~-----------------~~~~~~~~l~~L~~L~Ls~N~l~~---~~~~~~~--  426 (716)
                      |+...|.+|..+.+|..|+|-.|.+.-                 -.|. -++-..++.++++.+.+.+   ..|+..+  
T Consensus       334 it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~-Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~  412 (498)
T KOG4237|consen  334 ITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPR-CQSPGFVRQIPISDVAFGDFRCGGPEELGCL  412 (498)
T ss_pred             eEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCC-CCCCchhccccchhccccccccCCccccCCC
Confidence            777777777777777777777665530                 0111 1122345666666655432   1222221  


Q ss_pred             -------CcCCCCE-EECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCCc
Q 041300          427 -------NLLKLHY-LGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFE  498 (716)
Q Consensus       427 -------~l~~L~~-L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~  498 (716)
                             .++-+.+ ...|+..+. .+|..+.  ....+|++.+|.++ .+|..  .+.+| .+|+++|+++.+....|.
T Consensus       413 ~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~  485 (498)
T KOG4237|consen  413 TSSPCPPPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFS  485 (498)
T ss_pred             CCCCCCCCcchhhhhHhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhccccc
Confidence                   1222332 233333333 4444332  24567899999998 56665  56778 899999999988888999


Q ss_pred             CCCCCCEEEccCC
Q 041300          499 GMHGLSIIDISDN  511 (716)
Q Consensus       499 ~~~~L~~l~ls~N  511 (716)
                      ++++|.+|-|++|
T Consensus       486 n~tql~tlilsyn  498 (498)
T KOG4237|consen  486 NMTQLSTLILSYN  498 (498)
T ss_pred             chhhhheeEEecC
Confidence            9999999999887

>PLN03210 Resistant to P

Probab=99.92  E-value=1.6e-23  Score=251.01  Aligned_cols=364  Identities=19%  Similarity=0.219  Sum_probs=207.4

Q ss_pred             CCEEEEEcCCCCCcc-ccCCCCCCCCCCCcEEECCCCC------ccccCcccccCCC-CCCEEECcCCcCcccCCccccC
Q 041300           51 GRVTNISLRNTGLSG-TLRDFSFSSFPQLVHLDLSLNG------FFGTIPSQIGNLT-KLSYISLDSNQLSGKIPAEVGL  122 (716)
Q Consensus        51 ~~v~~l~l~~~~l~~-~~~~~~f~~l~~L~~L~Ls~n~------i~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~  122 (716)
                      .+|..+.+.-..+.. .+...+|..+++|+.|.+..+.      +...+|..|..++ +|+.|++.+|.+. .+|..| .
T Consensus       532 ~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~  609 (1153)
T PLN03210        532 KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-R  609 (1153)
T ss_pred             ceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-C
Confidence            356666554444321 3445678999999999986653      3345677777764 5999999999887 677777 4


Q ss_pred             CCCCCEEEcccccCccCCCccccCCCCCceeecccccccCCCCccccCCcCCcEEEeecccccccccccccCCCCCceee
Q 041300          123 LTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELD  202 (716)
Q Consensus       123 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  202 (716)
                      +.+|+.|+|++|.+. .++..+..+++|+.|+|+++.....+|. ++.+++|++|+|++|.....+|..+.+        
T Consensus       610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~--------  679 (1153)
T PLN03210        610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQY--------  679 (1153)
T ss_pred             ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhc--------
Confidence            689999999999987 5677788899999999998765556664 788899999999887654444544444        


Q ss_pred             CCCCCcccCCCCccCEEEeeCCcCcccCCCccccccccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccc
Q 041300          203 LSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLR  282 (716)
Q Consensus       203 l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~  282 (716)
                                +++|+.|++++|..-+.+|..+...+|+.|++++|......|..   ..+|+.|++++|.+. .+|..+ 
T Consensus       680 ----------L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-  744 (1153)
T PLN03210        680 ----------LNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-  744 (1153)
T ss_pred             ----------cCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-
Confidence                      44666666666544444555444446666666666543333321   234555555555554 233332 


Q ss_pred             cCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEE
Q 041300          283 NCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQAL  362 (716)
Q Consensus       283 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  362 (716)
                      .+++|+.|.+.++...... .                .+....+..+...++|+.|++++|.....+|..++++++|+.|
T Consensus       745 ~l~~L~~L~l~~~~~~~l~-~----------------~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L  807 (1153)
T PLN03210        745 RLENLDELILCEMKSEKLW-E----------------RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHL  807 (1153)
T ss_pred             cccccccccccccchhhcc-c----------------cccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEE
Confidence            3455555555443211000 0                0000011111223445555555554444455555555555555


Q ss_pred             EccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCc
Q 041300          363 DLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFV  442 (716)
Q Consensus       363 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  442 (716)
                      ++++|...+.+|..+ .+++|+.|++++|.....+|..   .++|+.|+|++|.++ .+|..+..+++|+.|++++|.-.
T Consensus       808 ~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L  882 (1153)
T PLN03210        808 EIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNL  882 (1153)
T ss_pred             ECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCc
Confidence            555543333444433 4555555555554333233321   235555556655554 34555555556666666553322


Q ss_pred             ccCChhhhCCCCCCEEECCCC
Q 041300          443 LELPKELEKLVQLSELDASHN  463 (716)
Q Consensus       443 ~~~~~~~~~l~~L~~L~ls~N  463 (716)
                      ..+|..+..++.|+.+++++|
T Consensus       883 ~~l~~~~~~L~~L~~L~l~~C  903 (1153)
T PLN03210        883 QRVSLNISKLKHLETVDFSDC  903 (1153)
T ss_pred             CccCcccccccCCCeeecCCC
Confidence            234445555555666665555

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.90  E-value=1.8e-22  Score=241.89  Aligned_cols=338  Identities=24%  Similarity=0.245  Sum_probs=207.6

Q ss_pred             cccCCCCCCEEEccccc------CccCCCccccCCC-CCceeecccccccCCCCccccCCcCCcEEEeeccccccccccc
Q 041300          119 EVGLLTHLKVLSFQFNE------LDGSIPPEVCQLS-SIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTN  191 (716)
Q Consensus       119 ~~~~l~~L~~L~L~~N~------l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~  191 (716)
                      +|.++++|+.|.+..+.      +...+|..|..++ +|+.|++.++.++ .+|..| ...+|+.|++.+|.+.. ++..
T Consensus       553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~~-L~~~  629 (1153)
T PLN03210        553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLEK-LWDG  629 (1153)
T ss_pred             HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCccccc-cccc
Confidence            44555555555554332      1223444444443 3555555555554 334444 34555555555555441 2222


Q ss_pred             ccCCCCCceeeCCCCCcccCCCCccCEEEeeCCcCcccCCCccccccccEEEccCCcCccccCccccCCCCccEEEecCC
Q 041300          192 IGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSEN  271 (716)
Q Consensus       192 l~~l~~L~~L~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n  271 (716)
                      +                  ..+++|+.|+++++.....+|......+|+.|++++|.....+|..+..++.|+.|++++|
T Consensus       630 ~------------------~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c  691 (1153)
T PLN03210        630 V------------------HSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRC  691 (1153)
T ss_pred             c------------------ccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCC
Confidence            2                  2233444444444433233333222235555555555544455556666666777777665


Q ss_pred             cccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcC------
Q 041300          272 HFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNI------  345 (716)
Q Consensus       272 ~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l------  345 (716)
                      ..-..+|..+ ++++|+.|++++|......|..   .++|+.|++++|.+.. +|..+ .+++|+.|++.++..      
T Consensus       692 ~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~-lP~~~-~l~~L~~L~l~~~~~~~l~~~  765 (1153)
T PLN03210        692 ENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEE-FPSNL-RLENLDELILCEMKSEKLWER  765 (1153)
T ss_pred             CCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcccc-ccccc-cccccccccccccchhhcccc
Confidence            4444555544 6777888888877654444432   3577888888887764 34333 467777777766432      


Q ss_pred             -cccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchh
Q 041300          346 -TGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPES  424 (716)
Q Consensus       346 -~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  424 (716)
                       ....+..+...++|+.|++++|...+.+|..+.++++|+.|++++|...+.+|..+ ++++|+.|++++|.....+|..
T Consensus       766 ~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~  844 (1153)
T PLN03210        766 VQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI  844 (1153)
T ss_pred             ccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc
Confidence             11122223345688899999888777888888889999999998875444677665 6888899999887655455543


Q ss_pred             hcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCc
Q 041300          425 LGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNN  488 (716)
Q Consensus       425 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~  488 (716)
                         ..+|+.|+|++|.+. .+|..+..+++|+.|++++|.--..+|..+..+++|+.+++++|.
T Consensus       845 ---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        845 ---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             ---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence               357888899988887 578888888889999988854333577777888888888888774

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.85  E-value=7.8e-21  Score=211.27  Aligned_cols=262  Identities=24%  Similarity=0.263  Sum_probs=176.4

Q ss_pred             ccCEEEeeCCcCcccCCCccccccccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEccC
Q 041300          215 NLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNG  294 (716)
Q Consensus       215 ~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~  294 (716)
                      .-..|++++|.++ .+|+.+. ..++.|++++|+++.. |.   ..+.|+.|++++|+++.. |..   .++|+.|++++
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~-~~L~~L~L~~N~Lt~L-P~---lp~~Lk~LdLs~N~LtsL-P~l---p~sL~~L~Ls~  271 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP-AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLTSL-PVL---PPGLLELSIFS  271 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh-cCCCEEEccCCcCCCC-CC---CCCCCcEEEecCCccCcc-cCc---ccccceeeccC
Confidence            4567778888777 4555554 2678888888887753 32   246788888888888743 432   35777888888


Q ss_pred             CcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccC
Q 041300          295 NNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIP  374 (716)
Q Consensus       295 n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  374 (716)
                      |.++... .   .+++|+.|++++|+++.. |.   ..++|+.|++++|++++. |..   ..+|+.|++++|++++ +|
T Consensus       272 N~L~~Lp-~---lp~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls~N~L~~-LP  338 (788)
T PRK15387        272 NPLTHLP-A---LPSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLASL-PAL---PSELCKLWAYNNQLTS-LP  338 (788)
T ss_pred             Cchhhhh-h---chhhcCEEECcCCccccc-cc---cccccceeECCCCccccC-CCC---cccccccccccCcccc-cc
Confidence            8777432 2   235677888888887754 32   246788888888888753 332   2457777888888873 44


Q ss_pred             cccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCC
Q 041300          375 KELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQ  454 (716)
Q Consensus       375 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  454 (716)
                      ..   ..+|+.|+|++|+|++ +|..   ..+|+.|++++|.+.. +|..   ..+|+.|++++|++++ +|..   ..+
T Consensus       339 ~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~  403 (788)
T PRK15387        339 TL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL---PSE  403 (788)
T ss_pred             cc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc---ccC
Confidence            32   2467888888888874 4442   2467777888888874 4543   3467888888888874 4432   246


Q ss_pred             CCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCcccccCCC
Q 041300          455 LSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPN  519 (716)
Q Consensus       455 L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~~p~  519 (716)
                      |+.|++++|+++. +|..   ..+|+.|++++|+|+ .+|..+..+++|+.|++++|+|++.+|.
T Consensus       404 L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        404 LKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             CCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence            7888888888874 4543   246777888888887 4577777888888888888888776543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.85  E-value=8.9e-21  Score=210.82  Aligned_cols=264  Identities=24%  Similarity=0.295  Sum_probs=145.2

Q ss_pred             CCEEECcCCcCcccCCccccCCCCCCEEEcccccCccCCCccccCCCCCceeecccccccCCCCccccCCcCCcEEEeec
Q 041300          102 LSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINN  181 (716)
Q Consensus       102 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~  181 (716)
                      -..|+|+.|.|+ .+|..+.  ++|+.|++++|+++. +|.   .+++|++|+|++|+|+.+ |..   .++|+.|++++
T Consensus       203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~LtsL-P~l---p~sL~~L~Ls~  271 (788)
T PRK15387        203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSL-PVL---PPGLLELSIFS  271 (788)
T ss_pred             CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCcc-cCc---ccccceeeccC
Confidence            455666666666 4555443  356666666666653 332   135566666666666533 321   24555666666


Q ss_pred             ccccccccccccCCCCCceeeCCCCCcccCCCCccCEEEeeCCcCcccCCCccccccccEEEccCCcCccccCccccCCC
Q 041300          182 NSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGG  261 (716)
Q Consensus       182 n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~  261 (716)
                      |.++. ++..                     ..+|+.|++++|+++. +|..  ...|+.|++++|.+++.         
T Consensus       272 N~L~~-Lp~l---------------------p~~L~~L~Ls~N~Lt~-LP~~--p~~L~~LdLS~N~L~~L---------  317 (788)
T PRK15387        272 NPLTH-LPAL---------------------PSGLCKLWIFGNQLTS-LPVL--PPGLQELSVSDNQLASL---------  317 (788)
T ss_pred             Cchhh-hhhc---------------------hhhcCEEECcCCcccc-cccc--ccccceeECCCCccccC---------
Confidence            65542 1100                     0244455555555542 2221  12344444444444432         


Q ss_pred             CccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcc
Q 041300          262 LLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVS  341 (716)
Q Consensus       262 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  341 (716)
                                      |..   ..+|+.|++++|++++. |.   ..++|+.|+|++|+|++. |..   .++|+.|+++
T Consensus       318 ----------------p~l---p~~L~~L~Ls~N~L~~L-P~---lp~~Lq~LdLS~N~Ls~L-P~l---p~~L~~L~Ls  370 (788)
T PRK15387        318 ----------------PAL---PSELCKLWAYNNQLTSL-PT---LPSGLQELSVSDNQLASL-PTL---PSELYKLWAY  370 (788)
T ss_pred             ----------------CCC---cccccccccccCccccc-cc---cccccceEecCCCccCCC-CCC---Ccccceehhh
Confidence                            211   12345555566655542 21   113566666666666643 221   2456667777


Q ss_pred             cCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccC
Q 041300          342 MNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSV  421 (716)
Q Consensus       342 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  421 (716)
                      +|+++. +|..   ..+|+.|++++|.+++ +|..   .++|+.|++++|++++ +|..   ..+|+.|++++|.|+ .+
T Consensus       371 ~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~L  437 (788)
T PRK15387        371 NNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RL  437 (788)
T ss_pred             cccccc-Cccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-cc
Confidence            777663 4432   2457777777777763 4432   2467777777777773 4543   235677788888876 56


Q ss_pred             chhhcCcCCCCEEECcCCcCcccCChhhh
Q 041300          422 PESLGNLLKLHYLGLSNNQFVLELPKELE  450 (716)
Q Consensus       422 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  450 (716)
                      |..+.++++|+.|+|++|++++..+..+.
T Consensus       438 P~sl~~L~~L~~LdLs~N~Ls~~~~~~L~  466 (788)
T PRK15387        438 PESLIHLSSETTVNLEGNPLSERTLQALR  466 (788)
T ss_pred             ChHHhhccCCCeEECCCCCCCchHHHHHH
Confidence            77777778888888888888776666553

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.81  E-value=1.9e-19  Score=201.71  Aligned_cols=246  Identities=26%  Similarity=0.428  Sum_probs=140.5

Q ss_pred             CCCEEECcCCcCcccCCccccCCCCCCEEEcccccCccCCCccccCCCCCceeecccccccCCCCccccCCcCCcEEEee
Q 041300          101 KLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYIN  180 (716)
Q Consensus       101 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~  180 (716)
                      +...|+++++.++ .+|..+.  +.|+.|+|++|.++ .+|..+.  .+|++|++++|.++. +|..+.  .+|+.|+|+
T Consensus       179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls  249 (754)
T PRK15370        179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTS-IPATLP--DTIQEMELS  249 (754)
T ss_pred             CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCcccc-CChhhh--ccccEEECc
Confidence            3455555555555 3443332  34555666666555 2333332  355666666665553 333332  245666666


Q ss_pred             cccccccccccccCCCCCceeeCCCCCcccCCCCccCEEEeeCCcCcccCCCccccccccEEEccCCcCccccCccccCC
Q 041300          181 NNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRG  260 (716)
Q Consensus       181 ~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~  260 (716)
                      +|.++ .+|..+.                    .+|+.|++++|++.. +|..+. ..|+.|++++|.++.. |..+  .
T Consensus       250 ~N~L~-~LP~~l~--------------------s~L~~L~Ls~N~L~~-LP~~l~-~sL~~L~Ls~N~Lt~L-P~~l--p  303 (754)
T PRK15370        250 INRIT-ELPERLP--------------------SALQSLDLFHNKISC-LPENLP-EELRYLSVYDNSIRTL-PAHL--P  303 (754)
T ss_pred             CCccC-cCChhHh--------------------CCCCEEECcCCccCc-cccccC-CCCcEEECCCCccccC-cccc--h
Confidence            66554 2222110                    145555555555552 333332 2466666666666542 2222  1


Q ss_pred             CCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEc
Q 041300          261 GLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNV  340 (716)
Q Consensus       261 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  340 (716)
                      ..|+.|++++|.++. +|..+  .++|+.|++++|.++.. |..+  .++|+.|++++|+++. +|..+  .++|+.|++
T Consensus       304 ~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~L-P~~l--~~sL~~L~Ls~N~L~~-LP~~l--p~~L~~LdL  374 (754)
T PRK15370        304 SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTSL-PASL--PPELQVLDVSKNQITV-LPETL--PPTITTLDV  374 (754)
T ss_pred             hhHHHHHhcCCcccc-CCccc--cccceeccccCCccccC-Chhh--cCcccEEECCCCCCCc-CChhh--cCCcCEEEC
Confidence            346666677776664 33332  25677888888887763 3333  2678888888888874 44433  357888888


Q ss_pred             ccCcCcccCcccccCCCCCCEEEccCCccccccCcc----cCCCCCCcEEEccCCccc
Q 041300          341 SMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKE----LGKLNSLTKLILRGNQLT  394 (716)
Q Consensus       341 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~  394 (716)
                      ++|+++. +|..+.  ..|+.|++++|++. .+|..    +..++.+..|++.+|.++
T Consensus       375 s~N~Lt~-LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        375 SRNALTN-LPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             CCCcCCC-CCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            8888874 444443  36888888888887 45543    334577888999998886

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.77  E-value=1.4e-18  Score=194.81  Aligned_cols=246  Identities=27%  Similarity=0.375  Sum_probs=163.9

Q ss_pred             ccCEEEeeCCcCcccCCCccccccccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEccC
Q 041300          215 NLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNG  294 (716)
Q Consensus       215 ~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~  294 (716)
                      +...|+++++.++. +|..+. ..++.|++++|.++.. |..+.  .+|+.|++++|+++. +|..+.  .+|+.|++++
T Consensus       179 ~~~~L~L~~~~Lts-LP~~Ip-~~L~~L~Ls~N~LtsL-P~~l~--~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls~  250 (754)
T PRK15370        179 NKTELRLKILGLTT-IPACIP-EQITTLILDNNELKSL-PENLQ--GNIKTLYANSNQLTS-IPATLP--DTIQEMELSI  250 (754)
T ss_pred             CceEEEeCCCCcCc-CCcccc-cCCcEEEecCCCCCcC-Chhhc--cCCCEEECCCCcccc-CChhhh--ccccEEECcC
Confidence            67889999988884 555443 3688999999998854 44332  478888888888874 454443  4688888888


Q ss_pred             CcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccC
Q 041300          295 NNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIP  374 (716)
Q Consensus       295 n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  374 (716)
                      |++... |..+.  .+|+.|++++|+++. +|..+.  ++|+.|++++|++++ +|..+.  ++|+.|++++|.++. +|
T Consensus       251 N~L~~L-P~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP  320 (754)
T PRK15370        251 NRITEL-PERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-LP  320 (754)
T ss_pred             CccCcC-ChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-CC
Confidence            888743 44332  468888888888874 444332  478888888888774 343332  467778888888773 44


Q ss_pred             cccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCC
Q 041300          375 KELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQ  454 (716)
Q Consensus       375 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  454 (716)
                      ..+  .++|+.|++++|.+++ +|..+.  ++|+.|++++|+|+ .+|..+.  ++|+.|++++|+++ .+|..+.  ..
T Consensus       321 ~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~s  389 (754)
T PRK15370        321 ETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AA  389 (754)
T ss_pred             ccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HH
Confidence            433  2567778888887774 555443  57788888888776 3555442  57777888888777 3555443  25


Q ss_pred             CCEEECCCCcCccccchh----ccCCCCCCEEECcCCcCc
Q 041300          455 LSELDASHNLFGGEIPFQ----ICSLKSLEKLNLSHNNLS  490 (716)
Q Consensus       455 L~~L~ls~N~l~~~~p~~----~~~l~~L~~L~ls~N~l~  490 (716)
                      |+.|++++|++. .+|..    ...++.+..|++.+|.++
T Consensus       390 L~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        390 LQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             HHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            777777777776 33433    334466777777777776

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.76  E-value=1.5e-18  Score=180.37  Aligned_cols=102  Identities=42%  Similarity=0.768  Sum_probs=91.9

Q ss_pred             CccchHHHHHHhhcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccc
Q 041300          611 EGKLVYDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY  690 (716)
Q Consensus       611 ~~~~~~~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~  690 (716)
                      ...++++++..+|++|+..++||+|+||.||+|.+++|+.||||++.......    .++|.+|++++++++|||+|+++
T Consensus        62 ~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~----~~eF~~Ei~~ls~l~H~Nlv~Ll  137 (361)
T KOG1187|consen   62 LRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQG----EREFLNEVEILSRLRHPNLVKLL  137 (361)
T ss_pred             cceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCCCcc----hhHHHHHHHHHhcCCCcCcccEE
Confidence            45689999999999999999999999999999999999999999887632110    46799999999999999999999


Q ss_pred             eEEEeCC-eeeEEEcccCCCCHHhHhC
Q 041300          691 GFCSHAQ-HSFLVYEFLERGSLAAILS  716 (716)
Q Consensus       691 g~~~~~~-~~~lv~Ey~~~GsL~~~l~  716 (716)
                      |||.+.+ +.+||||||+||+|.++|+
T Consensus       138 GyC~e~~~~~~LVYEym~nGsL~d~L~  164 (361)
T KOG1187|consen  138 GYCLEGGEHRLLVYEYMPNGSLEDHLH  164 (361)
T ss_pred             EEEecCCceEEEEEEccCCCCHHHHhC
Confidence            9999988 5999999999999999986

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.76  E-value=7.2e-20  Score=191.12  Aligned_cols=233  Identities=22%  Similarity=0.244  Sum_probs=116.8

Q ss_pred             cccCCCCcEEEccCCcCCC------ccchhhCCCCCCCEEEccCCccccccCCCCCCCC---CCCEEEcccCcCcc----
Q 041300          281 LRNCTSLIRVRLNGNNLTG------NISEALGLYPNLTFIDLSRNNFYGEISSNWGKCP---KLGTLNVSMNNITG----  347 (716)
Q Consensus       281 l~~l~~L~~L~l~~n~l~~------~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~---~L~~L~L~~n~l~~----  347 (716)
                      +...++++.++++++.+.+      ..+..+..+++|+.|++++|.+.+..+..+..+.   +|+.|++++|++++    
T Consensus        47 l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~  126 (319)
T cd00116          47 LRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLR  126 (319)
T ss_pred             HhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHH
Confidence            3344445555555554441      1223344455666666666655533333332222   36666666665552    


Q ss_pred             cCcccccCC-CCCCEEEccCCccccc----cCcccCCCCCCcEEEccCCccccc----CCcccCCCCCCCEEEccCCcCC
Q 041300          348 GIPREIGNM-SQLQALDLSLNHIVGE----IPKELGKLNSLTKLILRGNQLTGR----LPTEIGSLIELEYLDFSANKFN  418 (716)
Q Consensus       348 ~~~~~~~~l-~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~  418 (716)
                      .+...+..+ ++|+.|++++|.+++.    ++..+..+++|+.|++++|.+++.    ++..+..+++|+.|++++|.++
T Consensus       127 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  206 (319)
T cd00116         127 LLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT  206 (319)
T ss_pred             HHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccC
Confidence            122233444 5666666666666532    222344455666666666666521    2222334456666666666665


Q ss_pred             ccC----chhhcCcCCCCEEECcCCcCcccCChhhh-----CCCCCCEEECCCCcCcc----ccchhccCCCCCCEEECc
Q 041300          419 NSV----PESLGNLLKLHYLGLSNNQFVLELPKELE-----KLVQLSELDASHNLFGG----EIPFQICSLKSLEKLNLS  485 (716)
Q Consensus       419 ~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-----~l~~L~~L~ls~N~l~~----~~p~~~~~l~~L~~L~ls  485 (716)
                      +..    +..+..+++|+.|++++|.++......+.     ..+.|++|++++|.++.    .+...+..+++|+.++++
T Consensus       207 ~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~  286 (319)
T cd00116         207 DEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLR  286 (319)
T ss_pred             hHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECC
Confidence            332    22344556666666666666532222221     12566666666666652    122334445666677777


Q ss_pred             CCcCccc----CCcCCcCC-CCCCEEEccCCcc
Q 041300          486 HNNLSGL----IPNCFEGM-HGLSIIDISDNQL  513 (716)
Q Consensus       486 ~N~l~~~----~~~~~~~~-~~L~~l~ls~N~l  513 (716)
                      +|.++..    ....+... +.|+.+|+.+|++
T Consensus       287 ~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         287 GNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             CCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            7766633    22233333 4566666666653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.74  E-value=4.3e-19  Score=185.26  Aligned_cols=252  Identities=24%  Similarity=0.290  Sum_probs=171.9

Q ss_pred             cccEEEccCCcCccc----cCccccCCCCccEEEecCCcccc------cCCcccccCCCCcEEEccCCcCCCccchhhCC
Q 041300          238 MLTWLTLSGNHFTGY----LPHNICRGGLLEAFIVSENHFQG------TIPESLRNCTSLIRVRLNGNNLTGNISEALGL  307 (716)
Q Consensus       238 ~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~------~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~  307 (716)
                      .|+.++++++.++..    ++..+...+.++.++++.+.+.+      .++..+..+++|+.|++++|.+....+..+..
T Consensus        24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  103 (319)
T cd00116          24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES  103 (319)
T ss_pred             hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence            355555555555332    22233344556666666665542      23345667788888888888887655555544


Q ss_pred             CCC---CCEEEccCCcccc----ccCCCCCCC-CCCCEEEcccCcCccc----CcccccCCCCCCEEEccCCccccc---
Q 041300          308 YPN---LTFIDLSRNNFYG----EISSNWGKC-PKLGTLNVSMNNITGG----IPREIGNMSQLQALDLSLNHIVGE---  372 (716)
Q Consensus       308 ~~~---L~~L~Ls~n~l~~----~~~~~~~~l-~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~---  372 (716)
                      +..   |++|++++|++.+    .+...+..+ ++|+.|++++|.+++.    ++..+..+++|++|++++|.+++.   
T Consensus       104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  183 (319)
T cd00116         104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIR  183 (319)
T ss_pred             HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHH
Confidence            444   8999999888873    222334455 7889999999988742    344566778899999999988742   


Q ss_pred             -cCcccCCCCCCcEEEccCCccccc----CCcccCCCCCCCEEEccCCcCCccCchhhc-----CcCCCCEEECcCCcCc
Q 041300          373 -IPKELGKLNSLTKLILRGNQLTGR----LPTEIGSLIELEYLDFSANKFNNSVPESLG-----NLLKLHYLGLSNNQFV  442 (716)
Q Consensus       373 -~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-----~l~~L~~L~Ls~N~l~  442 (716)
                       ++..+..+++|+.|++++|.+++.    ++..+..+++|++|++++|.+++.....+.     ..+.|+.|++++|.++
T Consensus       184 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~  263 (319)
T cd00116         184 ALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT  263 (319)
T ss_pred             HHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence             233455667899999999988643    234456788899999999998864333332     2378999999999986


Q ss_pred             c----cCChhhhCCCCCCEEECCCCcCccc----cchhccCC-CCCCEEECcCCcC
Q 041300          443 L----ELPKELEKLVQLSELDASHNLFGGE----IPFQICSL-KSLEKLNLSHNNL  489 (716)
Q Consensus       443 ~----~~~~~~~~l~~L~~L~ls~N~l~~~----~p~~~~~l-~~L~~L~ls~N~l  489 (716)
                      .    .+...+..+++|+.+++++|.++..    ....+... +.|+.+++.+|.+
T Consensus       264 ~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         264 DDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             cHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            2    2344566678999999999999855    33344444 6899999988864

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.72  E-value=1e-19  Score=157.88  Aligned_cols=160  Identities=33%  Similarity=0.464  Sum_probs=139.5

Q ss_pred             CCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCE
Q 041300          330 GKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEY  409 (716)
Q Consensus       330 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  409 (716)
                      ..+.+++.|.|++|+++ .+|..++.+.+|++|++.+|+|. ..|..++.+++|+.|+++-|++. .+|..|+.++.|+.
T Consensus        30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev  106 (264)
T KOG0617|consen   30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV  106 (264)
T ss_pred             cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence            34567778888999988 66778889999999999999998 78889999999999999999997 88999999999999


Q ss_pred             EEccCCcCCc-cCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCc
Q 041300          410 LDFSANKFNN-SVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNN  488 (716)
Q Consensus       410 L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~  488 (716)
                      |||++|++.. ..|..|..++.|+.|+|++|.+. .+|..++++++|+.|.+..|.+- ..|..++.+..|+.|.+.+|+
T Consensus       107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnr  184 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNR  184 (264)
T ss_pred             hhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccce
Confidence            9999999864 56888888999999999999987 78888999999999999999887 678888889999999999999


Q ss_pred             CcccCC
Q 041300          489 LSGLIP  494 (716)
Q Consensus       489 l~~~~~  494 (716)
                      ++-+.|
T Consensus       185 l~vlpp  190 (264)
T KOG0617|consen  185 LTVLPP  190 (264)
T ss_pred             eeecCh
Confidence            885544

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.67  E-value=1.1e-18  Score=151.43  Aligned_cols=161  Identities=29%  Similarity=0.489  Sum_probs=104.4

Q ss_pred             CCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEc
Q 041300          309 PNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLIL  388 (716)
Q Consensus       309 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  388 (716)
                      .+++.|.||+|+++ .+|..+..+.+|+.|++++|+|. ..|..++.++.|+.|++.-|++. ..|..|+.+|.|+.|||
T Consensus        33 s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldl  109 (264)
T KOG0617|consen   33 SNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDL  109 (264)
T ss_pred             hhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhc
Confidence            44455555555555 23344555556666666666665 44555666666666666666665 55666666666666666


Q ss_pred             cCCcccc-cCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCcc
Q 041300          389 RGNQLTG-RLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGG  467 (716)
Q Consensus       389 ~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~  467 (716)
                      .+|++.. .+|..|..++.|+.|+|+.|.+. .+|..++++++|+.|.+..|.+. .+|.+++.++.|++|.+++|+++ 
T Consensus       110 tynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-  186 (264)
T KOG0617|consen  110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-  186 (264)
T ss_pred             cccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-
Confidence            6666542 35666666777777777777775 66677777777777777777776 57888888888888888888887 


Q ss_pred             ccchhccC
Q 041300          468 EIPFQICS  475 (716)
Q Consensus       468 ~~p~~~~~  475 (716)
                      .+|..++.
T Consensus       187 vlppel~~  194 (264)
T KOG0617|consen  187 VLPPELAN  194 (264)
T ss_pred             ecChhhhh
Confidence            55555443

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.62  E-value=8.3e-16  Score=152.22  Aligned_cols=92  Identities=26%  Similarity=0.455  Sum_probs=79.0

Q ss_pred             hcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL  701 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l  701 (716)
                      ..+|...+.||+|+||+||+|+.. ++..||||.+.+... .. ...+-..+|+.++++++|||||++++++..++..||
T Consensus         9 ~~~y~~~~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~l-~~-k~~e~L~~Ei~iLkel~H~nIV~l~d~~~~~~~i~l   86 (429)
T KOG0595|consen    9 VGDYELSREIGSGSFAVVYKGRHKKSGTEVAIKCIAKKKL-NK-KLVELLLSEIKILKELKHPNIVRLLDCIEDDDFIYL   86 (429)
T ss_pred             cccceehhhccCcceEEEEEeEeccCCceEEeeeehhhcc-CH-HHHHHHHHHHHHHHhcCCcceeeEEEEEecCCeEEE
Confidence            356888888999999999999754 578999999987432 11 134557899999999999999999999999999999


Q ss_pred             EEcccCCCCHHhHhC
Q 041300          702 VYEFLERGSLAAILS  716 (716)
Q Consensus       702 v~Ey~~~GsL~~~l~  716 (716)
                      |||||.+|+|.+||+
T Consensus        87 VMEyC~gGDLs~yi~  101 (429)
T KOG0595|consen   87 VMEYCNGGDLSDYIR  101 (429)
T ss_pred             EEEeCCCCCHHHHHH
Confidence            999999999999985

>PLN03150 hypothetical protein; Provisional

Probab=99.59  E-value=5.9e-15  Score=165.41  Aligned_cols=144  Identities=31%  Similarity=0.543  Sum_probs=81.7

Q ss_pred             hHHHHHHHHHHhhcccCCCCCCCCCcCCCCCCCCCCCCc-----ceeeeeeCCC---C--CEEEEEcCCCCCccccCCCC
Q 041300            2 NEEADALLKWKASLQSHNQSLLPSWTNASTNVSSKISPC-----AWYGISCNDA---G--RVTNISLRNTGLSGTLRDFS   71 (716)
Q Consensus         2 ~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~c-----~w~gv~c~~~---~--~v~~l~l~~~~l~~~~~~~~   71 (716)
                      ++|.+||+++|++++ .+.  ..+|..         +||     .|.||.|+..   +  .|+.|+|+++++.|.+ +..
T Consensus       371 ~~~~~aL~~~k~~~~-~~~--~~~W~g---------~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~i-p~~  437 (623)
T PLN03150        371 LEEVSALQTLKSSLG-LPL--RFGWNG---------DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFI-PND  437 (623)
T ss_pred             chHHHHHHHHHHhcC-Ccc--cCCCCC---------CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccC-CHH
Confidence            568899999999984 332  137842         455     6999999521   1  3555666665555554 234


Q ss_pred             CCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcccccCccCCCccccCC-CCC
Q 041300           72 FSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQL-SSI  150 (716)
Q Consensus        72 f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L  150 (716)
                      +..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.+++.+|+.++.+++|++|+|++|.+++.+|..+..+ .++
T Consensus       438 i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~  517 (623)
T PLN03150        438 ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHR  517 (623)
T ss_pred             HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccC
Confidence            5555555555555555555555555555555555555555555555555555555555555555555555544432 233


Q ss_pred             ceeecccc
Q 041300          151 EELFLYSN  158 (716)
Q Consensus       151 ~~L~L~~N  158 (716)
                      ..+++.+|
T Consensus       518 ~~l~~~~N  525 (623)
T PLN03150        518 ASFNFTDN  525 (623)
T ss_pred             ceEEecCC
Confidence            44444444

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.57  E-value=2.7e-15  Score=162.25  Aligned_cols=91  Identities=29%  Similarity=0.549  Sum_probs=78.4

Q ss_pred             hcCCcccccccCCCceEEEEEEcC------CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELP------SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA  696 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~------~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~  696 (716)
                      ..+....+.||+|+||+||+|+..      +...||||.++...   ..+.+++|+||++++..++|||||+++|+|..+
T Consensus       485 r~~i~~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a---~~~~~~dF~REaeLla~l~H~nIVrLlGVC~~~  561 (774)
T KOG1026|consen  485 RSDIVFKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKA---ENQARQDFRREAELLAELQHPNIVRLLGVCREG  561 (774)
T ss_pred             hhheeehhhhcCchhhhhhhhhccCCCCCccceehhHhhhcccc---cHHHHHHHHHHHHHHHhccCCCeEEEEEEEccC
Confidence            345566778999999999999753      34689999998732   223578999999999999999999999999999


Q ss_pred             CeeeEEEcccCCCCHHhHhC
Q 041300          697 QHSFLVYEFLERGSLAAILS  716 (716)
Q Consensus       697 ~~~~lv~Ey~~~GsL~~~l~  716 (716)
                      +..+||+|||..|||.+||+
T Consensus       562 ~P~~MvFEYm~~GDL~eFLr  581 (774)
T KOG1026|consen  562 DPLCMVFEYMDHGDLHEFLR  581 (774)
T ss_pred             CeeEEEEEecccccHHHHHH
Confidence            99999999999999999985

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=99.55  E-value=2.3e-15  Score=159.59  Aligned_cols=90  Identities=26%  Similarity=0.492  Sum_probs=78.5

Q ss_pred             cCCcccccccCCCceEEEEEEcC----CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCee
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP----SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHS  699 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~----~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~  699 (716)
                      .....+++||.|.||.||+|+++    ....||||.++......   .+.+|..|..||++++||||++|.|+.+.....
T Consensus       629 s~i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~Gytek---qrrdFL~EAsIMGQFdHPNIIrLEGVVTks~Pv  705 (996)
T KOG0196|consen  629 SCVKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEK---QRRDFLSEASIMGQFDHPNIIRLEGVVTKSKPV  705 (996)
T ss_pred             hheEEEEEEecccccceecccccCCCCcceeEEEeeeccCccHH---HHhhhhhhhhhcccCCCCcEEEEEEEEecCcee
Confidence            34567889999999999999764    24589999998753322   457899999999999999999999999999999


Q ss_pred             eEEEcccCCCCHHhHhC
Q 041300          700 FLVYEFLERGSLAAILS  716 (716)
Q Consensus       700 ~lv~Ey~~~GsL~~~l~  716 (716)
                      +||.|||+||+|+.|||
T Consensus       706 MIiTEyMENGsLDsFLR  722 (996)
T KOG0196|consen  706 MIITEYMENGSLDSFLR  722 (996)
T ss_pred             EEEhhhhhCCcHHHHHh
Confidence            99999999999999986

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=99.49  E-value=4.2e-14  Score=140.09  Aligned_cols=93  Identities=26%  Similarity=0.419  Sum_probs=77.9

Q ss_pred             hcCCcccccccCCCceEEEEE-EcCCCCEEEEEEccccCCccch---hhHHHHHHHHHHHhcCCCCCccccceEEEeCCe
Q 041300          623 TNDFDAEYCIGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQI---ADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQH  698 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~-~~~~~~~vavK~l~~~~~~~~~---~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~  698 (716)
                      .+.|...+.+|+|+||.|-.| +..+|..||||.+.++......   ......++|+++|++++|||||++++++..++.
T Consensus       171 ~d~yii~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV~~~d~f~~~ds  250 (475)
T KOG0615|consen  171 NDYYIISKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIVRIKDFFEVPDS  250 (475)
T ss_pred             cceeEeeeeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEEEEeeeeecCCc
Confidence            345778889999999999999 4567999999999875533211   012235799999999999999999999999999


Q ss_pred             eeEEEcccCCCCHHhHh
Q 041300          699 SFLVYEFLERGSLAAIL  715 (716)
Q Consensus       699 ~~lv~Ey~~~GsL~~~l  715 (716)
                      .|||||||+||+|.+++
T Consensus       251 ~YmVlE~v~GGeLfd~v  267 (475)
T KOG0615|consen  251 SYMVLEYVEGGELFDKV  267 (475)
T ss_pred             eEEEEEEecCccHHHHH
Confidence            99999999999999976

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=99.49  E-value=1.5e-14  Score=148.89  Aligned_cols=90  Identities=28%  Similarity=0.543  Sum_probs=79.1

Q ss_pred             hhcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300          622 ETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL  701 (716)
Q Consensus       622 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l  701 (716)
                      ....+...+.||+|.||.||.|.|+....||||.++....     ..++|.+|+++|++++|++||+++|+|..++.+||
T Consensus       204 ~r~~l~l~~~LG~G~FG~V~~g~~~~~~~vavk~ik~~~m-----~~~~f~~Ea~iMk~L~H~~lV~l~gV~~~~~piyI  278 (468)
T KOG0197|consen  204 PREELKLIRELGSGQFGEVWLGKWNGSTKVAVKTIKEGSM-----SPEAFLREAQIMKKLRHEKLVKLYGVCTKQEPIYI  278 (468)
T ss_pred             cHHHHHHHHHhcCCccceEEEEEEcCCCcccceEEecccc-----ChhHHHHHHHHHHhCcccCeEEEEEEEecCCceEE
Confidence            3344566778999999999999998777999999986421     34679999999999999999999999999889999


Q ss_pred             EEcccCCCCHHhHhC
Q 041300          702 VYEFLERGSLAAILS  716 (716)
Q Consensus       702 v~Ey~~~GsL~~~l~  716 (716)
                      |||||+.|+|.+||+
T Consensus       279 VtE~m~~GsLl~yLr  293 (468)
T KOG0197|consen  279 VTEYMPKGSLLDYLR  293 (468)
T ss_pred             EEEecccCcHHHHhh
Confidence            999999999999985

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=99.46  E-value=1.1e-13  Score=142.93  Aligned_cols=89  Identities=35%  Similarity=0.604  Sum_probs=74.7

Q ss_pred             CcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC-eeeEEEc
Q 041300          626 FDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ-HSFLVYE  704 (716)
Q Consensus       626 ~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~-~~~lv~E  704 (716)
                      +...+.+|+|+||+||+|.|.....||||++........  ..++|.+|+.+|.+++|||||+++|+|.++. ...+|||
T Consensus        43 l~~~~~iG~G~~g~V~~~~~~g~~~vavK~~~~~~~~~~--~~~~f~~E~~il~~l~HpNIV~f~G~~~~~~~~~~iVtE  120 (362)
T KOG0192|consen   43 LPIEEVLGSGSFGTVYKGKWRGTDVVAVKIISDPDFDDE--SRKAFRREASLLSRLRHPNIVQFYGACTSPPGSLCIVTE  120 (362)
T ss_pred             hhhhhhcccCCceeEEEEEeCCceeEEEEEecchhcChH--HHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCceEEEEE
Confidence            344556999999999999996555599999986432222  2568999999999999999999999998887 7899999


Q ss_pred             ccCCCCHHhHhC
Q 041300          705 FLERGSLAAILS  716 (716)
Q Consensus       705 y~~~GsL~~~l~  716 (716)
                      ||++|+|.++++
T Consensus       121 y~~~GsL~~~l~  132 (362)
T KOG0192|consen  121 YMPGGSLSVLLH  132 (362)
T ss_pred             eCCCCcHHHHHh
Confidence            999999999884

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.45  E-value=9.9e-14  Score=138.73  Aligned_cols=86  Identities=33%  Similarity=0.531  Sum_probs=72.9

Q ss_pred             hcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC--CCCCccccceEEEeCC---
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI--RHRNIVKFYGFCSHAQ---  697 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l--~H~niv~l~g~~~~~~---  697 (716)
                      .++....+.||+|+||.||+|+| .|+.||||++..+       +.+.|.+|.|+.+..  ||+||..+++.-..++   
T Consensus       210 arqI~L~e~IGkGRyGEVwrG~w-rGe~VAVKiF~sr-------dE~SWfrEtEIYqTvmLRHENILgFIaaD~~~~gs~  281 (513)
T KOG2052|consen  210 ARQIVLQEIIGKGRFGEVWRGRW-RGEDVAVKIFSSR-------DERSWFRETEIYQTVMLRHENILGFIAADNKDNGSW  281 (513)
T ss_pred             hheeEEEEEecCccccceeeccc-cCCceEEEEeccc-------chhhhhhHHHHHHHHHhccchhhhhhhccccCCCce
Confidence            45677888999999999999999 5788999999753       346688898888765  9999999999876543   


Q ss_pred             -eeeEEEcccCCCCHHhHhC
Q 041300          698 -HSFLVYEFLERGSLAAILS  716 (716)
Q Consensus       698 -~~~lv~Ey~~~GsL~~~l~  716 (716)
                       +.|||.||.|+|||+|||.
T Consensus       282 TQLwLvTdYHe~GSL~DyL~  301 (513)
T KOG2052|consen  282 TQLWLVTDYHEHGSLYDYLN  301 (513)
T ss_pred             EEEEEeeecccCCcHHHHHh
Confidence             6799999999999999983

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.43  E-value=6.1e-14  Score=144.84  Aligned_cols=96  Identities=30%  Similarity=0.520  Sum_probs=85.7

Q ss_pred             HHHHHHhhcCCcccccccCCCceEEEEEEcCC-CCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEE
Q 041300          616 YDEIVRETNDFDAEYCIGNGGHGSVYRAELPS-GEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCS  694 (716)
Q Consensus       616 ~~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~-~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~  694 (716)
                      +++++.+..+..+..++|-|.||.||.|.|+. ...||||.++...     ....+|.+|..+|+.++|||+|+++|+|.
T Consensus       259 ~DkWEmeRtdItMkhKLGGGQYGeVYeGvWKkyslTvAVKtLKEDt-----MeveEFLkEAAvMKeikHpNLVqLLGVCT  333 (1157)
T KOG4278|consen  259 ADKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-----MEVEEFLKEAAVMKEIKHPNLVQLLGVCT  333 (1157)
T ss_pred             cchhhccchheeeeeccCCCcccceeeeeeeccceeeehhhhhhcc-----hhHHHHHHHHHHHHhhcCccHHHHhhhhc
Confidence            47777777788899999999999999998865 5689999997632     24678999999999999999999999999


Q ss_pred             eCCeeeEEEcccCCCCHHhHhC
Q 041300          695 HAQHSFLVYEFLERGSLAAILS  716 (716)
Q Consensus       695 ~~~~~~lv~Ey~~~GsL~~~l~  716 (716)
                      .+...|||.|||.+|+|.|||+
T Consensus       334 ~EpPFYIiTEfM~yGNLLdYLR  355 (1157)
T KOG4278|consen  334 HEPPFYIITEFMCYGNLLDYLR  355 (1157)
T ss_pred             cCCCeEEEEecccCccHHHHHH
Confidence            9999999999999999999985

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=99.43  E-value=1.1e-13  Score=142.53  Aligned_cols=90  Identities=28%  Similarity=0.492  Sum_probs=79.9

Q ss_pred             hcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      .....+.++||+|.||+|..++...+..||||.++...   ....+.+|.+||++|.+++|||||+++|+|..++...+|
T Consensus       537 Rs~L~~~ekiGeGqFGEVhLCeveg~lkVAVK~Lr~~a---~~~~r~~F~kEIkiLsqLkhPNIveLvGVC~~DePicmI  613 (807)
T KOG1094|consen  537 RSRLRFKEKIGEGQFGEVHLCEVEGPLKVAVKILRPDA---TKNARNDFLKEIKILSRLKHPNIVELLGVCVQDDPLCMI  613 (807)
T ss_pred             hhheehhhhhcCcccceeEEEEecCceEEEEeecCccc---chhHHHHHHHHHHHHhccCCCCeeEEEeeeecCCchHHH
Confidence            34466778999999999999998788999999998742   222468999999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      +|||++|+|.+||
T Consensus       614 ~EYmEnGDLnqFl  626 (807)
T KOG1094|consen  614 TEYMENGDLNQFL  626 (807)
T ss_pred             HHHHhcCcHHHHH
Confidence            9999999999987

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.42  E-value=6.7e-15  Score=151.08  Aligned_cols=196  Identities=35%  Similarity=0.470  Sum_probs=156.4

Q ss_pred             CCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEE
Q 041300          307 LYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKL  386 (716)
Q Consensus       307 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  386 (716)
                      .+..-...||+.|++. .+|..++.+..|+.+.|+.|.+. .+|..+.++..|+.|||+.|+++ ..|..+..++ |+.|
T Consensus        73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl  148 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL  148 (722)
T ss_pred             cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence            3455567889999887 55777777888888999998887 67888889999999999999998 7788888777 8999


Q ss_pred             EccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCc
Q 041300          387 ILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFG  466 (716)
Q Consensus       387 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~  466 (716)
                      .+++|+++ .+|..++.+..|..||.+.|.+. .+|..++++.+|+.|++..|++. .+|.++..| .|..||+|.|++.
T Consensus       149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis  224 (722)
T KOG0532|consen  149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS  224 (722)
T ss_pred             EEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee
Confidence            99999997 78888888888999999999987 67788888899999999999887 577777754 5888999999988


Q ss_pred             cccchhccCCCCCCEEECcCCcCcccCCcCCcCC---CCCCEEEccCCc
Q 041300          467 GEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGM---HGLSIIDISDNQ  512 (716)
Q Consensus       467 ~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~---~~L~~l~ls~N~  512 (716)
                       .+|..|..|+.|++|-|.+|.|.. +|..+...   .=.++|+..-++
T Consensus       225 -~iPv~fr~m~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  225 -YLPVDFRKMRHLQVLQLENNPLQS-PPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             -ecchhhhhhhhheeeeeccCCCCC-ChHHHHhccceeeeeeecchhcc
Confidence             788888999999999999998874 34332222   224566666654

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.41  E-value=2.1e-13  Score=142.96  Aligned_cols=92  Identities=33%  Similarity=0.531  Sum_probs=75.3

Q ss_pred             cCCcccccccCCCceEEEEEEcCC--C--CE-EEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCe
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELPS--G--EV-VAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQH  698 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~~--~--~~-vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~  698 (716)
                      .+....++||+|+||.||+|++..  +  .. ||||....... .......+|.+|.++|+.++|||||+++|++....+
T Consensus       157 ~~v~l~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~-~~~~~~~e~m~EArvMr~l~H~NVVr~yGVa~~~~P  235 (474)
T KOG0194|consen  157 SDIELGKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSE-LTKEQIKEFMKEARVMRQLNHPNVVRFYGVAVLEEP  235 (474)
T ss_pred             cCccccceeecccccEEEEEEEEecCCceeeeeEEEeeccccc-ccHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCc
Confidence            344455899999999999997643  2  23 89999875221 112256799999999999999999999999999999


Q ss_pred             eeEEEcccCCCCHHhHhC
Q 041300          699 SFLVYEFLERGSLAAILS  716 (716)
Q Consensus       699 ~~lv~Ey~~~GsL~~~l~  716 (716)
                      .|+|||+|.||+|.++|+
T Consensus       236 l~ivmEl~~gGsL~~~L~  253 (474)
T KOG0194|consen  236 LMLVMELCNGGSLDDYLK  253 (474)
T ss_pred             cEEEEEecCCCcHHHHHH
Confidence            999999999999999984

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.37  E-value=9.7e-13  Score=137.28  Aligned_cols=91  Identities=31%  Similarity=0.561  Sum_probs=81.0

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ..|...++||+|||+.||+++- ..|..||+|++.+....... .++...+||++.++++|||||++++++++.+.+|||
T Consensus        18 ~~Y~~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~k~~-~reKv~~EIeIHr~L~HpnIV~f~~~FEDs~nVYiv   96 (592)
T KOG0575|consen   18 KRYKRGRFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLKKPK-QREKVLNEIEIHRSLKHPNIVQFYHFFEDSNNVYIV   96 (592)
T ss_pred             ceeeeeeeeccCcceEEEEEEEcCCCcEEEEEEeehHHhcCcc-hHHHHHHHHHHHHhcCCCcEEeeeeEeecCCceEEE
Confidence            4588899999999999999975 78999999999875544443 457789999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      .|+|++|+|.+++
T Consensus        97 LELC~~~sL~el~  109 (592)
T KOG0575|consen   97 LELCHRGSLMELL  109 (592)
T ss_pred             EEecCCccHHHHH
Confidence            9999999999876

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.37  E-value=1.7e-14  Score=148.15  Aligned_cols=194  Identities=26%  Similarity=0.399  Sum_probs=131.4

Q ss_pred             CCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEE
Q 041300          284 CTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALD  363 (716)
Q Consensus       284 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  363 (716)
                      +..-...+++.|++.. +|..+..+..|+.+.|..|.+. .+|...+.+..|..|||+.|+++ ..|..+..++ |+.|-
T Consensus        74 ltdt~~aDlsrNR~~e-lp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli  149 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFSE-LPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI  149 (722)
T ss_pred             ccchhhhhcccccccc-CchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence            3344556777777763 4555555666777777777776 44566677777777777777777 4555555554 77777


Q ss_pred             ccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcc
Q 041300          364 LSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVL  443 (716)
Q Consensus       364 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  443 (716)
                      +++|+++ .+|..++.+++|..|+.+.|.+. .+|..++++.+|+.|.+..|.+. .+|..+.. -.|..||+|.|++. 
T Consensus       150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~-LpLi~lDfScNkis-  224 (722)
T KOG0532|consen  150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS-LPLIRLDFSCNKIS-  224 (722)
T ss_pred             EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC-CceeeeecccCcee-
Confidence            7777776 66777777777777777777776 56667777777777777777776 45555653 35777777777776 


Q ss_pred             cCChhhhCCCCCCEEECCCCcCccccchhccC---CCCCCEEECcCC
Q 041300          444 ELPKELEKLVQLSELDASHNLFGGEIPFQICS---LKSLEKLNLSHN  487 (716)
Q Consensus       444 ~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~---l~~L~~L~ls~N  487 (716)
                      .+|-.|.+|..|++|-|.+|.+. ..|..++-   ..=.++|+...+
T Consensus       225 ~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  225 YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence            57777777777777777777776 45555432   222355555555

>PLN03150 hypothetical protein; Provisional

Probab=99.37  E-value=2.1e-12  Score=144.91  Aligned_cols=117  Identities=31%  Similarity=0.520  Sum_probs=73.0

Q ss_pred             CCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccC
Q 041300          431 LHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISD  510 (716)
Q Consensus       431 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~  510 (716)
                      ++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|..+..+++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            55666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             CcccccCCCccc--cCCCCcccccCCCCCCCCCCCCCCCc
Q 041300          511 NQLQGPVPNSTA--FRNAPVEALEGNKELCGGVKGMQPCK  548 (716)
Q Consensus       511 N~l~~~~p~~~~--~~~~~~~~~~~n~~~c~~~~~~~~~~  548 (716)
                      |+++|.+|..-.  ........+.+|+.+|+.+. ..+|.
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~-l~~C~  538 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG-LRACG  538 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCccccCCCC-CCCCc
Confidence            666666664311  11223345677788887542 35563

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.35  E-value=3.3e-13  Score=124.42  Aligned_cols=92  Identities=28%  Similarity=0.483  Sum_probs=79.4

Q ss_pred             hcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL  701 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l  701 (716)
                      .++|..++.+|+|.||.||.|+.+ ++-.||+|++.+...... ...+++++||++-+.++||||.+++||+.+....||
T Consensus        21 l~dfeigr~LgkgkFG~vYlarekks~~IvalKVlfKsqi~~~-~v~~qlrREiEIqs~L~hpnilrlY~~fhd~~riyL   99 (281)
T KOG0580|consen   21 LDDFEIGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQILKT-QVEHQLRREIEIQSHLRHPNILRLYGYFHDSKRIYL   99 (281)
T ss_pred             hhhccccccccCCccccEeEeeeccCCcEEEEeeeeHHHHHHh-cchhhhhheeEeecccCCccHHhhhhheeccceeEE
Confidence            357999999999999999999765 467899999976542222 245689999999999999999999999999999999


Q ss_pred             EEcccCCCCHHhHh
Q 041300          702 VYEFLERGSLAAIL  715 (716)
Q Consensus       702 v~Ey~~~GsL~~~l  715 (716)
                      ++||.++|++...|
T Consensus       100 ilEya~~gel~k~L  113 (281)
T KOG0580|consen  100 ILEYAPRGELYKDL  113 (281)
T ss_pred             EEEecCCchHHHHH
Confidence            99999999998876

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=99.34  E-value=2e-12  Score=130.57  Aligned_cols=85  Identities=32%  Similarity=0.537  Sum_probs=71.7

Q ss_pred             cCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHh--cCCCCCccccceEEEeCC----
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALT--EIRHRNIVKFYGFCSHAQ----  697 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~--~l~H~niv~l~g~~~~~~----  697 (716)
                      .......+||+|+||.||+|.+. ++.||||++...       ..+.|++|-++.+  .++|+||++++++-...+    
T Consensus       210 ~pl~l~eli~~Grfg~V~KaqL~-~~~VAVKifp~~-------~kqs~~~Ek~Iy~lp~m~h~nIl~Fi~~ekr~t~~~~  281 (534)
T KOG3653|consen  210 DPLQLLELIGRGRFGCVWKAQLD-NRLVAVKIFPEQ-------EKQSFQNEKNIYSLPGMKHENILQFIGAEKRGTADRM  281 (534)
T ss_pred             CchhhHHHhhcCccceeehhhcc-CceeEEEecCHH-------HHHHHHhHHHHHhccCccchhHHHhhchhccCCcccc
Confidence            34556678999999999999984 589999998752       4577988887765  558999999999987766    


Q ss_pred             eeeEEEcccCCCCHHhHhC
Q 041300          698 HSFLVYEFLERGSLAAILS  716 (716)
Q Consensus       698 ~~~lv~Ey~~~GsL~~~l~  716 (716)
                      +++||+||.++|+|.+||.
T Consensus       282 eywLVt~fh~kGsL~dyL~  300 (534)
T KOG3653|consen  282 EYWLVTEFHPKGSLCDYLK  300 (534)
T ss_pred             ceeEEeeeccCCcHHHHHH
Confidence            8899999999999999983

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=99.33  E-value=7.8e-13  Score=130.31  Aligned_cols=90  Identities=22%  Similarity=0.373  Sum_probs=78.8

Q ss_pred             CCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          625 DFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      .|...+.+|+|.||+|-++. ...|+.||||.+++.+..++. +.-..++||++|+.++||||+.++.++...+.+.|||
T Consensus        54 RyE~~etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkdeq-DlvhIRREIeIMSsLNHPhII~IyEVFENkdKIvivM  132 (668)
T KOG0611|consen   54 RYEITETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKDEQ-DLVHIRREIEIMSSLNHPHIIQIYEVFENKDKIVIVM  132 (668)
T ss_pred             HHHHHHHhcCCcccceeehhhccCCcEeehhhhhhhhcccHH-HHHHHHHHHHHHhhcCCCceeehhhhhcCCceEEEEE
Confidence            35566789999999999995 357999999999886655443 5556899999999999999999999999999999999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      ||..+|+|.||+
T Consensus       133 EYaS~GeLYDYi  144 (668)
T KOG0611|consen  133 EYASGGELYDYI  144 (668)
T ss_pred             EecCCccHHHHH
Confidence            999999999997

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.29  E-value=3.2e-13  Score=127.22  Aligned_cols=89  Identities=28%  Similarity=0.506  Sum_probs=74.9

Q ss_pred             CCcccccccCCCceEEEEE-EcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccce-EEEeCCe-eeE
Q 041300          625 DFDAEYCIGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG-FCSHAQH-SFL  701 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~-~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g-~~~~~~~-~~l  701 (716)
                      +|...++||+|+||+||++ .+.+|..||.|.++-. ..+.+ .++....||.++++++|||||++++ .+.++.+ .+|
T Consensus        20 ~y~Il~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~-~md~k-~rq~~v~Ei~lLkQL~HpNIVqYy~~~f~~~~evlni   97 (375)
T KOG0591|consen   20 DYQILKKIGRGSFGEVYKVQCLLDGKLVALKKIQFG-MMDAK-ARQDCVKEISLLKQLNHPNIVQYYAHSFIEDNEVLNI   97 (375)
T ss_pred             HHHHHHHHcCCcchheEEeeeccCcchhhhhhcchh-hccHH-HHHHHHHHHHHHHhcCCchHHHHHHHhhhccchhhHH
Confidence            4777889999999999999 4678999999999843 23332 5678999999999999999999999 5555555 799


Q ss_pred             EEcccCCCCHHhHh
Q 041300          702 VYEFLERGSLAAIL  715 (716)
Q Consensus       702 v~Ey~~~GsL~~~l  715 (716)
                      |||||..|+|.+.+
T Consensus        98 vmE~c~~GDLsqmI  111 (375)
T KOG0591|consen   98 VMELCDAGDLSQMI  111 (375)
T ss_pred             HHHhhcccCHHHHH
Confidence            99999999999876

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.28  E-value=4.9e-12  Score=142.45  Aligned_cols=90  Identities=27%  Similarity=0.520  Sum_probs=76.7

Q ss_pred             cCCcccccccCCCceEEEEEEcCC--CC----EEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELPS--GE----VVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ  697 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~~--~~----~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~  697 (716)
                      ......+.||+|+||.||+|.+.+  +.    .||||.+++..   ..+...+|.+|..+|++++|||||+++|+|-+..
T Consensus       692 ~~v~l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~---~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~l~~~  768 (1025)
T KOG1095|consen  692 KNVTLLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLS---SEQEVSDFLKEALLMSKFDHPNIVSLIGVCLDSG  768 (1025)
T ss_pred             hheEeeeeeccccccceEEEEEecCCCCccceEEEEEeccccC---CHHHHHHHHHHHHHHhcCCCcceeeEEEeecCCC
Confidence            345567889999999999997653  32    48999998643   2235678999999999999999999999999999


Q ss_pred             eeeEEEcccCCCCHHhHhC
Q 041300          698 HSFLVYEFLERGSLAAILS  716 (716)
Q Consensus       698 ~~~lv~Ey~~~GsL~~~l~  716 (716)
                      ..+|++|||++|+|..||+
T Consensus       769 ~~~i~leyM~gGDL~sflr  787 (1025)
T KOG1095|consen  769 PPLILLEYMEGGDLLSFLR  787 (1025)
T ss_pred             CcEEEehhcccCcHHHHHH
Confidence            9999999999999999985

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=99.25  E-value=6.7e-12  Score=123.65  Aligned_cols=92  Identities=25%  Similarity=0.417  Sum_probs=80.2

Q ss_pred             hcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL  701 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l  701 (716)
                      .++|...++||+|+||+||.++. ++++.+|+|++++....... ..+...+|..++.+++||.||+++..+++++..|+
T Consensus        24 ~~dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~~-e~~~~~~Er~IL~~v~hPFiv~l~ysFQt~~kLyl  102 (357)
T KOG0598|consen   24 PDDFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVEKK-EVRHTKAERNILSKIKHPFIVKLIYSFQTEEKLYL  102 (357)
T ss_pred             hhheeeeeeeeccCCceEEEEEEcccCceeehhhhhhhHhhhhh-hHHHHHHHHHHHHhCCCCcEeeeEEecccCCeEEE
Confidence            45799999999999999999954 56889999999876543332 45668899999999999999999999999999999


Q ss_pred             EEcccCCCCHHhHh
Q 041300          702 VYEFLERGSLAAIL  715 (716)
Q Consensus       702 v~Ey~~~GsL~~~l  715 (716)
                      |+||+.||+|+.+|
T Consensus       103 Vld~~~GGeLf~hL  116 (357)
T KOG0598|consen  103 VLDYLNGGELFYHL  116 (357)
T ss_pred             EEeccCCccHHHHH
Confidence            99999999999876

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.25  E-value=8.1e-12  Score=134.20  Aligned_cols=178  Identities=38%  Similarity=0.548  Sum_probs=93.2

Q ss_pred             CCCCEEEcccCcCcccCcccccCCC-CCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEE
Q 041300          333 PKLGTLNVSMNNITGGIPREIGNMS-QLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLD  411 (716)
Q Consensus       333 ~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  411 (716)
                      +.++.|++.+|.++ .++.....+. +|+.|++++|.+. .+|..+..+++|+.|++++|+++ .+|.....+++|+.|+
T Consensus       116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~  192 (394)
T COG4886         116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD  192 (394)
T ss_pred             cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence            34445555555544 2223333332 5555555555554 33344455555555555555555 3333333455555556


Q ss_pred             ccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcc
Q 041300          412 FSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSG  491 (716)
Q Consensus       412 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~  491 (716)
                      +++|++. .+|.....+..|++|.+++|++. ..+..+..+..+..+.+++|++. ..+..+..+++++.|++++|.++.
T Consensus       193 ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~  269 (394)
T COG4886         193 LSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS  269 (394)
T ss_pred             ccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceeccccccccc
Confidence            6665555 33333333444566666666432 24444555555666666666554 224555566666666666666664


Q ss_pred             cCCcCCcCCCCCCEEEccCCcccccCC
Q 041300          492 LIPNCFEGMHGLSIIDISDNQLQGPVP  518 (716)
Q Consensus       492 ~~~~~~~~~~~L~~l~ls~N~l~~~~p  518 (716)
                      ..+  +..+.+++.+|+++|.+....|
T Consensus       270 i~~--~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         270 ISS--LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             ccc--ccccCccCEEeccCccccccch
Confidence            433  5566666666666666655444

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=99.24  E-value=1.8e-11  Score=120.66  Aligned_cols=87  Identities=30%  Similarity=0.471  Sum_probs=73.9

Q ss_pred             CcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC-eeeEEE
Q 041300          626 FDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ-HSFLVY  703 (716)
Q Consensus       626 ~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~-~~~lv~  703 (716)
                      +....+||+|..|+||++.. ++++.+|.|.+...   .+....++..+|++++.+++||+||.+||+|.... +..|+|
T Consensus        81 le~~~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~---~~~~~~~Qi~rEl~il~~~~spyIV~~ygaF~~~~~~isI~m  157 (364)
T KOG0581|consen   81 LERLGVLGSGNGGTVYKVRHKPTGKIYALKVILLN---IDPALQKQILRELEILRSCQSPYIVGFYGAFYSNGEEISICM  157 (364)
T ss_pred             hhhhhhcccCCCcEEEEEEEcCCCeEEEEEeeccc---CCHHHHHHHHHHHHHHhhCCCCCeeeEeEEEEeCCceEEeeh
Confidence            44556899999999999964 46889999999542   12224678999999999999999999999999988 599999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      |||.+|+|++++
T Consensus       158 EYMDgGSLd~~~  169 (364)
T KOG0581|consen  158 EYMDGGSLDDIL  169 (364)
T ss_pred             hhcCCCCHHHHH
Confidence            999999999876

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.24  E-value=1.1e-11  Score=126.34  Aligned_cols=88  Identities=28%  Similarity=0.505  Sum_probs=71.5

Q ss_pred             CCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC--CeeeE
Q 041300          625 DFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA--QHSFL  701 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~--~~~~l  701 (716)
                      .|...+.||+|.||.||+|+ ..+|..||+|++........  ...-..|||.+|++++|||||++.+...+.  ...||
T Consensus       118 ~feki~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~~~--~~~t~~REI~ILr~l~HpNIikL~eivt~~~~~siYl  195 (560)
T KOG0600|consen  118 SFEKIEKIGEGTYGQVYKARDLETGKIVALKKVRFDNEKEG--FPITAIREIKILRRLDHPNIIKLEEIVTSKLSGSIYL  195 (560)
T ss_pred             HHHHHHHhcCcchhheeEeeecccCcEEEEEEeecccCCCc--chHHHHHHHHHHHhcCCCcccceeeEEEecCCceEEE
Confidence            46667789999999999994 66899999999976432211  334467999999999999999999999876  68999


Q ss_pred             EEcccCCCCHHhHh
Q 041300          702 VYEFLERGSLAAIL  715 (716)
Q Consensus       702 v~Ey~~~GsL~~~l  715 (716)
                      |+|||++ +|.-++
T Consensus       196 VFeYMdh-DL~GLl  208 (560)
T KOG0600|consen  196 VFEYMDH-DLSGLL  208 (560)
T ss_pred             EEecccc-hhhhhh
Confidence            9999998 666543

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=99.24  E-value=1.2e-11  Score=127.19  Aligned_cols=93  Identities=26%  Similarity=0.385  Sum_probs=80.4

Q ss_pred             hhcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeee
Q 041300          622 ETNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSF  700 (716)
Q Consensus       622 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~  700 (716)
                      ..++|....+||+|+||.||.++- ++|..+|+|+++++.+.... ..+-.+.|-.+|...++|+||+++..+.+.+..|
T Consensus       139 ~~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M~~~~-Qv~hV~aERdiL~~~ds~~vVKLyYsFQD~~~LY  217 (550)
T KOG0605|consen  139 SLDDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSEMLKKN-QVEHVRAERDILAEVDSPWVVKLYYSFQDKEYLY  217 (550)
T ss_pred             CcccchhheeeccccceeEEEEEEccCCcEEeeecccHHHHHhhh-hHHHHHHHHHHhhhcCCCcEEEEEEEecCCCeeE
Confidence            457899999999999999999964 46999999999986543322 3456889999999999999999999999999999


Q ss_pred             EEEcccCCCCHHhHh
Q 041300          701 LVYEFLERGSLAAIL  715 (716)
Q Consensus       701 lv~Ey~~~GsL~~~l  715 (716)
                      |||||++||++..+|
T Consensus       218 LiMEylPGGD~mTLL  232 (550)
T KOG0605|consen  218 LIMEYLPGGDMMTLL  232 (550)
T ss_pred             EEEEecCCccHHHHH
Confidence            999999999998765

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.23  E-value=1.4e-11  Score=132.36  Aligned_cols=200  Identities=39%  Similarity=0.514  Sum_probs=138.8

Q ss_pred             EEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCC-CCCEEEcccCcCcccCcccccCCCCCCEEEccCC
Q 041300          289 RVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCP-KLGTLNVSMNNITGGIPREIGNMSQLQALDLSLN  367 (716)
Q Consensus       289 ~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  367 (716)
                      .+.+..|.+...... +..++.++.|++.+|.++.. +....... +|+.|++++|++. .+|..+..+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~~~~~-~~~~~~l~~L~l~~n~i~~i-~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSNISE-LLELTNLTSLDLDNNNITDI-PPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccCchh-hhcccceeEEecCCcccccC-ccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            456666655333222 23346677777777777644 33344443 7888888888877 34456677888888888888


Q ss_pred             ccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCCh
Q 041300          368 HIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPK  447 (716)
Q Consensus       368 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  447 (716)
                      +++ .+|.....++.|+.|++++|+++ .+|........|++|++++|.+. ..+..+..+.++..+.+++|++. ..+.
T Consensus       174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~  249 (394)
T COG4886         174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPE  249 (394)
T ss_pred             hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccc
Confidence            887 45555556778888888888887 55655555556888888888543 45566777788888888888876 3366


Q ss_pred             hhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCC
Q 041300          448 ELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCF  497 (716)
Q Consensus       448 ~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~  497 (716)
                      .+..++.++.|++++|.++...+  +..+.+++.|++++|.+....|...
T Consensus       250 ~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~  297 (394)
T COG4886         250 SIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIA  297 (394)
T ss_pred             hhccccccceecccccccccccc--ccccCccCEEeccCccccccchhhh
Confidence            67777888888888888874443  7788888888888888887665543

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=99.22  E-value=5e-12  Score=135.28  Aligned_cols=87  Identities=24%  Similarity=0.448  Sum_probs=72.9

Q ss_pred             CcccccccCCCceEEEEEEc-CCC----CEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeee
Q 041300          626 FDAEYCIGNGGHGSVYRAEL-PSG----EVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSF  700 (716)
Q Consensus       626 ~~~~~~ig~g~~g~v~~~~~-~~~----~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~  700 (716)
                      +...++||+|+||+||+|.| +.|    .+||+|++......   ....++..|+-.|.+++|||++|++|+|.... ..
T Consensus       698 lkk~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~~---~~s~e~LdeAl~masldHpnl~RLLgvc~~s~-~q  773 (1177)
T KOG1025|consen  698 LKKDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTSP---KASIELLDEALRMASLDHPNLLRLLGVCMLST-LQ  773 (1177)
T ss_pred             hhhhceeccccceeEEeeeEecCCceecceeEEEEeeccCCc---hhhHHHHHHHHHHhcCCCchHHHHhhhcccch-HH
Confidence            55678999999999999954 444    47999999763322   24578999999999999999999999997655 89


Q ss_pred             EEEcccCCCCHHhHhC
Q 041300          701 LVYEFLERGSLAAILS  716 (716)
Q Consensus       701 lv~Ey~~~GsL~~~l~  716 (716)
                      ||++||+.|+|.||++
T Consensus       774 lvtq~mP~G~LlDyvr  789 (1177)
T KOG1025|consen  774 LVTQLMPLGCLLDYVR  789 (1177)
T ss_pred             HHHHhcccchHHHHHH
Confidence            9999999999999974

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=99.22  E-value=9.6e-12  Score=127.95  Aligned_cols=88  Identities=28%  Similarity=0.427  Sum_probs=75.9

Q ss_pred             CCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          625 DFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      +|...+.||+|+||.||||+.+ +.+.||+|.+.+....+.  +.+..++||+++++++|||||.++++|+.....|+|.
T Consensus         3 ~yhv~e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~gr~~k--~l~~l~~ev~i~r~lkHpniv~m~esfEt~~~~~vVt   80 (808)
T KOG0597|consen    3 QYHVYEMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSGRNEK--ELKNLRQEVRILRSLKHPNIVEMLESFETSAHLWVVT   80 (808)
T ss_pred             chhHHHHhcCCccceeeecccccceeEEEEEEehhcCCchH--HHHHHHHHHHHHHhcCCcchhhHHHhhcccceEEEEe
Confidence            5666778999999999999654 578999999987543322  4567899999999999999999999999999999999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      |||.| +|+.+|
T Consensus        81 e~a~g-~L~~il   91 (808)
T KOG0597|consen   81 EYAVG-DLFTIL   91 (808)
T ss_pred             hhhhh-hHHHHH
Confidence            99988 999876

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=99.20  E-value=2.8e-11  Score=129.34  Aligned_cols=92  Identities=22%  Similarity=0.393  Sum_probs=76.3

Q ss_pred             hhcCCcccccccCCCceEEEEEEcC------CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCC-CCCccccceEEE
Q 041300          622 ETNDFDAEYCIGNGGHGSVYRAELP------SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR-HRNIVKFYGFCS  694 (716)
Q Consensus       622 ~~~~~~~~~~ig~g~~g~v~~~~~~------~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~-H~niv~l~g~~~  694 (716)
                      ....|...++||+|+||.||+|...      .+..||||++.....   ....+.|.+|++++++++ |||||+++|+|.
T Consensus        35 ~~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~---~~~~~~~~~Ei~~l~~l~~HpnIv~l~~~~~  111 (400)
T cd05105          35 PRDGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTAR---SSEKQALMSELKIMTHLGPHLNIVNLLGACT  111 (400)
T ss_pred             cccceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCC---hHHHHHHHHHHHHHHhcCCCCCeeeEEEEEc
Confidence            3457888899999999999999642      134699999975321   113467999999999996 999999999999


Q ss_pred             eCCeeeEEEcccCCCCHHhHhC
Q 041300          695 HAQHSFLVYEFLERGSLAAILS  716 (716)
Q Consensus       695 ~~~~~~lv~Ey~~~GsL~~~l~  716 (716)
                      ..+..|+|||||++|+|.++|+
T Consensus       112 ~~~~~~lv~Ey~~~g~L~~~l~  133 (400)
T cd05105         112 KSGPIYIITEYCFYGDLVNYLH  133 (400)
T ss_pred             cCCceEEEEEecCCCcHHHHHH
Confidence            9999999999999999999873

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=99.19  E-value=2.4e-11  Score=129.46  Aligned_cols=91  Identities=25%  Similarity=0.434  Sum_probs=76.3

Q ss_pred             hcCCcccccccCCCceEEEEEEc------CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEe
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAEL------PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSH  695 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~------~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~  695 (716)
                      ..+|...+.||+|+||.||+|.+      .++..||||+++....  . ...+.+.+|+.++..+ +|||||+++|+|..
T Consensus        34 ~~~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~--~-~~~~~~~~Ei~il~~l~~HpnIv~l~~~~~~  110 (375)
T cd05104          34 RNRLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAH--L-TEREALMSELKVLSYLGNHINIVNLLGACTV  110 (375)
T ss_pred             hHHeehhheecCCccceEEEEEEeccccCccceeEEEEeccCCcC--c-HHHHHHHHHHHHHHHhcCCcceeeeeeeecc
Confidence            45688899999999999999953      2356899999975321  1 1345789999999999 89999999999999


Q ss_pred             CCeeeEEEcccCCCCHHhHhC
Q 041300          696 AQHSFLVYEFLERGSLAAILS  716 (716)
Q Consensus       696 ~~~~~lv~Ey~~~GsL~~~l~  716 (716)
                      ++..++|||||++|+|.++++
T Consensus       111 ~~~~~lv~E~~~~g~L~~~l~  131 (375)
T cd05104         111 GGPTLVITEYCCYGDLLNFLR  131 (375)
T ss_pred             CCcceeeehhccCCcHHHHHH
Confidence            999999999999999998873

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=99.17  E-value=4e-11  Score=112.51  Aligned_cols=88  Identities=28%  Similarity=0.497  Sum_probs=73.3

Q ss_pred             CCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          625 DFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      .|...+++|+|.||.||+|+ ..+|+.||||+++.....+.  -...-.|||+.+++++|+||+.+++++-..+...||+
T Consensus         3 rY~~~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~kdG--i~~talREIK~Lqel~h~nIi~LiD~F~~~~~l~lVf   80 (318)
T KOG0659|consen    3 RYEKLEKLGEGTYGVVYKARDTETGKRVAIKKIKLGNAKDG--INRTALREIKLLQELKHPNIIELIDVFPHKSNLSLVF   80 (318)
T ss_pred             hhhhhhhhcCcceEEEEEEEecCCCcEEEEEEeeccccccC--ccHHHHHHHHHHHHccCcchhhhhhhccCCCceEEEE
Confidence            46677889999999999995 55799999999987543322  1245689999999999999999999999999999999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      |||+. +|+..+
T Consensus        81 Efm~t-dLe~vI   91 (318)
T KOG0659|consen   81 EFMPT-DLEVVI   91 (318)
T ss_pred             Eeccc-cHHHHh
Confidence            99997 676554

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=99.17  E-value=3.1e-11  Score=125.72  Aligned_cols=95  Identities=31%  Similarity=0.446  Sum_probs=79.1

Q ss_pred             HHHHHhhcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC
Q 041300          617 DEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA  696 (716)
Q Consensus       617 ~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~  696 (716)
                      ++++...+.+.....||+|+||+||+|+|. | .||||.+.......+  ..+.|.+||..+++.||.||+=+.|||..+
T Consensus       385 ~~WeIp~~ev~l~~rIGsGsFGtV~Rg~wh-G-dVAVK~Lnv~~pt~~--qlqaFKnEVa~lkkTRH~NIlLFMG~~~~p  460 (678)
T KOG0193|consen  385 EEWEIPPEEVLLGERIGSGSFGTVYRGRWH-G-DVAVKLLNVDDPTPE--QLQAFKNEVAVLKKTRHENILLFMGACMNP  460 (678)
T ss_pred             cccccCHHHhhccceeccccccceeecccc-c-ceEEEEEecCCCCHH--HHHHHHHHHHHHhhcchhhheeeehhhcCC
Confidence            344444445667788999999999999984 3 499999987544332  567899999999999999999999999887


Q ss_pred             CeeeEEEcccCCCCHHhHhC
Q 041300          697 QHSFLVYEFLERGSLAAILS  716 (716)
Q Consensus       697 ~~~~lv~Ey~~~GsL~~~l~  716 (716)
                      +. +||..+|+|-+|+.+||
T Consensus       461 ~~-AIiTqwCeGsSLY~hlH  479 (678)
T KOG0193|consen  461 PL-AIITQWCEGSSLYTHLH  479 (678)
T ss_pred             ce-eeeehhccCchhhhhcc
Confidence            77 99999999999999987

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=99.16  E-value=6.6e-11  Score=126.56  Aligned_cols=90  Identities=19%  Similarity=0.275  Sum_probs=76.0

Q ss_pred             CCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          625 DFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      .|...+.||+|+||+||+|.. .+++.||||++........ .....+.+|++++.+++|||||++++++.+++..|+||
T Consensus         2 ~f~~~~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~-~~~~~~~~E~~il~~l~h~~iv~l~~~~~~~~~~~lv~   80 (381)
T cd05626           2 MFVKIKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVLNR-NQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVM   80 (381)
T ss_pred             CceEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhh-HHHHHHHHHHHHHHhcCCCCeeeeEEEEecCCEEEEEE
Confidence            477788999999999999964 4688999999975322211 13456899999999999999999999999999999999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      |||++|+|.+++
T Consensus        81 E~~~gg~L~~~l   92 (381)
T cd05626          81 DYIPGGDMMSLL   92 (381)
T ss_pred             ecCCCCcHHHHH
Confidence            999999999876

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=99.15  E-value=7.9e-11  Score=119.35  Aligned_cols=89  Identities=25%  Similarity=0.470  Sum_probs=75.5

Q ss_pred             cCCcccccccCCCceEEEEEEcC----CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCee
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP----SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHS  699 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~----~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~  699 (716)
                      .+|...+.||+|+||.||+|.+.    .+..||+|.++....  . .....|.+|+..+.+++|||||+++|++..++..
T Consensus         5 ~~~~~~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~--~-~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~   81 (266)
T cd05064           5 KSIKIERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCS--D-KQRRGFLAEALTLGQFDHSNIVRLEGVITRGNTM   81 (266)
T ss_pred             HHeEEeeeecccCCCeEEEEEEecCCCceeeEEEEecCCCCC--H-HHHHHHHHHHHHHhcCCCCCcCeEEEEEecCCCc
Confidence            46788889999999999999653    356899999875321  1 1345799999999999999999999999999999


Q ss_pred             eEEEcccCCCCHHhHh
Q 041300          700 FLVYEFLERGSLAAIL  715 (716)
Q Consensus       700 ~lv~Ey~~~GsL~~~l  715 (716)
                      ++||||+++|+|.+++
T Consensus        82 ~lv~e~~~~~~L~~~l   97 (266)
T cd05064          82 MIVTEYMSNGALDSFL   97 (266)
T ss_pred             EEEEEeCCCCcHHHHH
Confidence            9999999999999886

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.15  E-value=6.7e-11  Score=125.83  Aligned_cols=90  Identities=26%  Similarity=0.406  Sum_probs=76.3

Q ss_pred             CCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          625 DFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      +|...++||+|+||+||+++.. +++.||||++........ .....+.+|++++..++|||||++++++.+++..|+||
T Consensus         2 ~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~-~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~   80 (364)
T cd05599           2 DFESIKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEK-EQVAHVRAERDILAEADNPWVVKLYYSFQDENYLYLIM   80 (364)
T ss_pred             CceEEEEEEecCCEEEEEEEECCCCCEEEEEEEEHHHhhhh-hHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCeEEEEE
Confidence            6788899999999999999654 688999999975321111 13456889999999999999999999999999999999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      |||++|+|.+++
T Consensus        81 E~~~~g~L~~~l   92 (364)
T cd05599          81 EYLPGGDMMTLL   92 (364)
T ss_pred             CCCCCcHHHHHH
Confidence            999999999876

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=99.14  E-value=1.2e-10  Score=120.58  Aligned_cols=89  Identities=26%  Similarity=0.477  Sum_probs=74.7

Q ss_pred             cCCcccccccCCCceEEEEEEcCC-----------------CCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCc
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELPS-----------------GEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNI  686 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~~-----------------~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~ni  686 (716)
                      ..|...++||+|+||.||++..++                 +..||||.+....   ......+|.+|++++.+++||||
T Consensus         5 ~~~~~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~E~~~l~~l~h~ni   81 (304)
T cd05096           5 GHLLFKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDA---NKNARNDFLKEVKILSRLKDPNI   81 (304)
T ss_pred             hhCeeeeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCC---CHHHHHHHHHHHHHHhhcCCCCe
Confidence            357788899999999999996432                 3369999987532   12245679999999999999999


Q ss_pred             cccceEEEeCCeeeEEEcccCCCCHHhHh
Q 041300          687 VKFYGFCSHAQHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       687 v~l~g~~~~~~~~~lv~Ey~~~GsL~~~l  715 (716)
                      |++++++.+.+..++||||+++|+|.+++
T Consensus        82 v~~~~~~~~~~~~~lv~e~~~~~~L~~~l  110 (304)
T cd05096          82 IRLLGVCVDEDPLCMITEYMENGDLNQFL  110 (304)
T ss_pred             eEEEEEEecCCceEEEEecCCCCcHHHHH
Confidence            99999999999999999999999999876

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.14  E-value=8.3e-11  Score=125.67  Aligned_cols=90  Identities=28%  Similarity=0.386  Sum_probs=75.8

Q ss_pred             CCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          625 DFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      +|...+.||+|+||+||++.. .+++.||||++.+...... ...+.+.+|++++.+++|||||++++++.+++..|+||
T Consensus         2 ~y~~~~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~-~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~   80 (377)
T cd05629           2 DFHTVKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKK-DQLAHVKAERDVLAESDSPWVVSLYYSFQDAQYLYLIM   80 (377)
T ss_pred             CceEeEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHHHHh-HHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCeeEEEE
Confidence            577888999999999999964 4688999999865321111 13456889999999999999999999999999999999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      ||+++|+|.+++
T Consensus        81 E~~~gg~L~~~l   92 (377)
T cd05629          81 EFLPGGDLMTML   92 (377)
T ss_pred             eCCCCCcHHHHH
Confidence            999999999876

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.14  E-value=1e-10  Score=122.30  Aligned_cols=94  Identities=21%  Similarity=0.364  Sum_probs=77.8

Q ss_pred             hhcCCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccch-hhHHHHHHHHHHHhcCC-CCCccccceEEEeCCe
Q 041300          622 ETNDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQI-ADQKEFLTEVQALTEIR-HRNIVKFYGFCSHAQH  698 (716)
Q Consensus       622 ~~~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~-~~~~~~~~ei~~l~~l~-H~niv~l~g~~~~~~~  698 (716)
                      ..+.|...+.||+|+||+||.|. ..+++.||||.+......... ...+...+|+.++++++ ||||++++.++.....
T Consensus        15 ~~g~y~~~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev~~t~~~   94 (370)
T KOG0583|consen   15 SIGKYELGRTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEVFATPTK   94 (370)
T ss_pred             ccCceeeeeeecCCCCeeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEEEecCCe
Confidence            34678899999999999999995 456899999977664222111 12345668999999999 9999999999999999


Q ss_pred             eeEEEcccCCCCHHhHh
Q 041300          699 SFLVYEFLERGSLAAIL  715 (716)
Q Consensus       699 ~~lv~Ey~~~GsL~~~l  715 (716)
                      .|+|||||.+|+|++++
T Consensus        95 ~~ivmEy~~gGdL~~~i  111 (370)
T KOG0583|consen   95 IYIVMEYCSGGDLFDYI  111 (370)
T ss_pred             EEEEEEecCCccHHHHH
Confidence            99999999999999987

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.13  E-value=1.2e-11  Score=117.49  Aligned_cols=129  Identities=28%  Similarity=0.311  Sum_probs=58.9

Q ss_pred             CcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCC
Q 041300          383 LTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASH  462 (716)
Q Consensus       383 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~  462 (716)
                      |+.+||++|.|+ .+..++.-++.++.|++|+|.|..+  ..+..+++|+.||||+|.++. +...-.++.++++|.|+.
T Consensus       286 LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La~  361 (490)
T KOG1259|consen  286 LTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLAQ  361 (490)
T ss_pred             hhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHh-hhhhHhhhcCEeeeehhh
Confidence            444444444443 2333333344444444444444321  113444444444444444431 222223344445555555


Q ss_pred             CcCccccchhccCCCCCCEEECcCCcCcccC-CcCCcCCCCCCEEEccCCcccccC
Q 041300          463 NLFGGEIPFQICSLKSLEKLNLSHNNLSGLI-PNCFEGMHGLSIIDISDNQLQGPV  517 (716)
Q Consensus       463 N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~-~~~~~~~~~L~~l~ls~N~l~~~~  517 (716)
                      |.+..  -..+.++-+|..||+++|+|.... -..+..++-|.++.|.+|++.+.+
T Consensus       362 N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  362 NKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             hhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence            54431  122344455555566666554332 134555666666667777766543

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.13  E-value=1.2e-10  Score=121.62  Aligned_cols=92  Identities=25%  Similarity=0.369  Sum_probs=79.4

Q ss_pred             hcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCC-CCCccccceEEEeCCeee
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR-HRNIVKFYGFCSHAQHSF  700 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~-H~niv~l~g~~~~~~~~~  700 (716)
                      ...|...+.||+|.||.||++.-+ +|+.+|+|++.+....... +...+.+|+.+|+++. |||+|.+++++.+....+
T Consensus        34 ~~~Y~l~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~-~~~~v~~Ev~il~~l~~hpniv~l~~~~e~~~~~~  112 (382)
T KOG0032|consen   34 KEKYELGRELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGKE-DREDVRREVAILQQLSGHPNIVQLKDAFEDPDSVY  112 (382)
T ss_pred             cccEEehhhhCCCCceEEEEEEecCCCceeEEEEeehhhccccc-cHHHHHHHHHHHHhccCCCCEEEEEEEEEcCCeEE
Confidence            346777889999999999999655 4999999999875443222 4467999999999998 999999999999999999


Q ss_pred             EEEcccCCCCHHhHh
Q 041300          701 LVYEFLERGSLAAIL  715 (716)
Q Consensus       701 lv~Ey~~~GsL~~~l  715 (716)
                      +|||+|+||+|++.+
T Consensus       113 lvmEL~~GGeLfd~i  127 (382)
T KOG0032|consen  113 LVMELCEGGELFDRI  127 (382)
T ss_pred             EEEEecCCchHHHHH
Confidence            999999999999976

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=99.13  E-value=7.4e-11  Score=121.25  Aligned_cols=90  Identities=19%  Similarity=0.278  Sum_probs=75.8

Q ss_pred             CCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          625 DFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      +|...++||+|+||.||+|... +++.||||++........ ...+.+.+|++++++++||||+++++++.+.+..++||
T Consensus         2 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~-~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~   80 (291)
T cd05612           2 DLERIKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRL-KQEQHVHNEKRVLKEVSHPFIIRLFWTEHDQRFLYMLM   80 (291)
T ss_pred             CceeeeeeecCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhh-HHHHHHHHHHHHHHhCCCCcHhhhHhhhccCCeEEEEE
Confidence            5778889999999999999754 688999999865321111 13456889999999999999999999999999999999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      ||+++|+|.+++
T Consensus        81 e~~~~~~L~~~~   92 (291)
T cd05612          81 EYVPGGELFSYL   92 (291)
T ss_pred             eCCCCCCHHHHH
Confidence            999999999876

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=99.13  E-value=7.2e-11  Score=126.19  Aligned_cols=91  Identities=24%  Similarity=0.461  Sum_probs=75.7

Q ss_pred             hcCCcccccccCCCceEEEEEEcC------CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCC-CCCccccceEEEe
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELP------SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR-HRNIVKFYGFCSH  695 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~------~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~-H~niv~l~g~~~~  695 (716)
                      .++|...+.||+|+||.||+|.+.      .+..||||++.....  . ...+.+.+|++++.++. |||||+++|+|..
T Consensus        36 ~~~~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~--~-~~~~~~~~E~~~l~~l~~H~niv~~~~~~~~  112 (401)
T cd05107          36 RDNLVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTAR--S-SEKQALMSELKIMSHLGPHLNIVNLLGACTK  112 (401)
T ss_pred             HHHeehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCC--h-hHHHHHHHHHHHHHhcCCCCCeEEEEEEEcc
Confidence            345777889999999999999753      245799999975321  1 12357899999999997 9999999999999


Q ss_pred             CCeeeEEEcccCCCCHHhHhC
Q 041300          696 AQHSFLVYEFLERGSLAAILS  716 (716)
Q Consensus       696 ~~~~~lv~Ey~~~GsL~~~l~  716 (716)
                      .+..++|||||++|+|.++++
T Consensus       113 ~~~~~iv~E~~~~g~L~~~l~  133 (401)
T cd05107         113 GGPIYIITEYCRYGDLVDYLH  133 (401)
T ss_pred             CCCcEEEEeccCCCcHHHHHH
Confidence            899999999999999999874

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=99.12  E-value=1.2e-10  Score=122.13  Aligned_cols=90  Identities=28%  Similarity=0.479  Sum_probs=76.6

Q ss_pred             CCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          625 DFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      +|...+.||+|+||.||+|+.. +++.||||++....... ......+.+|++++..++|||||++++++..++..|+||
T Consensus         2 ~y~~~~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~-~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~   80 (333)
T cd05600           2 DFQILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFK-LNEVRHVLTERDILTTTKSEWLVKLLYAFQDDEYLYLAM   80 (333)
T ss_pred             CcEEEEEEeecCCeEEEEEEECCCCCEEEEEEEEHHHHhh-hhHHHHHHHHHHHHHhCCCCCCccEEEEEEcCCEEEEEE
Confidence            5788899999999999999765 58899999997532111 113456889999999999999999999999999999999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      |||++|+|.+++
T Consensus        81 e~~~g~~L~~~l   92 (333)
T cd05600          81 EYVPGGDFRTLL   92 (333)
T ss_pred             eCCCCCCHHHHH
Confidence            999999999886

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=99.12  E-value=1e-10  Score=122.67  Aligned_cols=91  Identities=29%  Similarity=0.396  Sum_probs=75.7

Q ss_pred             cCCcccccccCCCceEEEEEEcCC--CCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELPS--GEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL  701 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~~--~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l  701 (716)
                      ++|...+.||+|+||.||+|....  +..||||++........ ...+.+.+|++++..++|||||++++++.+++..|+
T Consensus        30 ~~y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~~-~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~l  108 (340)
T PTZ00426         30 EDFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQ-KQVDHVFSERKILNYINHPFCVNLYGSFKDESYLYL  108 (340)
T ss_pred             hhcEEEEEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhhhh-hhHHHHHHHHHHHHhCCCCCCcceEEEEEeCCEEEE
Confidence            468888999999999999997543  36899999865321111 134568899999999999999999999999999999


Q ss_pred             EEcccCCCCHHhHh
Q 041300          702 VYEFLERGSLAAIL  715 (716)
Q Consensus       702 v~Ey~~~GsL~~~l  715 (716)
                      |||||++|+|.+++
T Consensus       109 v~Ey~~~g~L~~~i  122 (340)
T PTZ00426        109 VLEFVIGGEFFTFL  122 (340)
T ss_pred             EEeCCCCCcHHHHH
Confidence            99999999999886

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=99.12  E-value=1.4e-10  Score=116.74  Aligned_cols=87  Identities=24%  Similarity=0.508  Sum_probs=76.1

Q ss_pred             cCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      .+|...+.||+|+||.||++.+.++..+|+|.+.....     ...+|.+|++++++++||||+++++++...+..++||
T Consensus         4 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~a~K~~~~~~~-----~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv~   78 (256)
T cd05114           4 SELTFMKELGSGQFGVVHLGKWRAQIKVAIKAINEGAM-----SEEDFIEEAKVMMKLSHPKLVQLYGVCTQQKPLYIVT   78 (256)
T ss_pred             HHcEEeeEecCCcCceEEEEEeccCceEEEEecccCCc-----cHHHHHHHHHHHHHCCCCCceeEEEEEccCCCEEEEE
Confidence            34777888999999999999988878899998864321     3457899999999999999999999999999999999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      ||+++|+|.+++
T Consensus        79 e~~~~~~L~~~~   90 (256)
T cd05114          79 EFMENGCLLNYL   90 (256)
T ss_pred             EcCCCCcHHHHH
Confidence            999999999876

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=99.12  E-value=1.1e-10  Score=122.13  Aligned_cols=91  Identities=24%  Similarity=0.337  Sum_probs=76.9

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      .+|...+.||+|+||.||+|+.. +++.||||++........ ...+.+.+|++++++++|||||++++++.+++..|+|
T Consensus        18 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~-~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv   96 (329)
T PTZ00263         18 SDFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKM-KQVQHVAQEKSILMELSHPFIVNMMCSFQDENRVYFL   96 (329)
T ss_pred             hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhh-hhHHHHHHHHHHHHhCCCCCCCcEEEEEEcCCEEEEE
Confidence            46888899999999999999764 588999999875321111 1345689999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      |||+++|+|.+++
T Consensus        97 ~e~~~~~~L~~~l  109 (329)
T PTZ00263         97 LEFVVGGELFTHL  109 (329)
T ss_pred             EcCCCCChHHHHH
Confidence            9999999999876

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=99.12  E-value=6e-11  Score=124.84  Aligned_cols=91  Identities=26%  Similarity=0.492  Sum_probs=73.7

Q ss_pred             hcCCcccccccCCCceEEEEEEc------CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEe
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAEL------PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSH  695 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~------~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~  695 (716)
                      .++|...++||+|+||.||+|..      .+++.||||++.....   ....+.+.+|+.++.++ +|||||+++|+|..
T Consensus         6 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~   82 (338)
T cd05102           6 RDRLRLGKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGAT---ASEHKALMSELKILIHIGNHLNVVNLLGACTK   82 (338)
T ss_pred             hhHceeeeEeccCCcceEEEEEEeccCCcccchhhheeccccccc---hHHHHHHHHHHHHHHHhccCcceeeEEeEecC
Confidence            35688889999999999999963      2356899999875321   11345799999999999 89999999999876


Q ss_pred             CC-eeeEEEcccCCCCHHhHhC
Q 041300          696 AQ-HSFLVYEFLERGSLAAILS  716 (716)
Q Consensus       696 ~~-~~~lv~Ey~~~GsL~~~l~  716 (716)
                      .+ ..++||||+++|+|.++++
T Consensus        83 ~~~~~~lv~ey~~~g~L~~~l~  104 (338)
T cd05102          83 PNGPLMVIVEFCKYGNLSNFLR  104 (338)
T ss_pred             CCCceEEEEecCCCCcHHHHHH
Confidence            54 5789999999999998873

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=99.11  E-value=4.7e-11  Score=113.97  Aligned_cols=86  Identities=27%  Similarity=0.462  Sum_probs=70.1

Q ss_pred             CCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          625 DFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      .|....++|+|+||.||+++-+ +|+.||||++..+.  ++..-.+--.|||+++++++|||+|.++++|......+||+
T Consensus         3 kYE~LgkvGEGSYGvV~KCrnk~TgqIVAIKkF~Ese--dd~~VkKIAlREIrmLKqLkH~NLVnLiEVFrrkrklhLVF   80 (396)
T KOG0593|consen    3 KYEKLGKVGEGSYGVVMKCRNKDTGQIVAIKKFVESE--DDPVVKKIALREIRMLKQLKHENLVNLIEVFRRKRKLHLVF   80 (396)
T ss_pred             HHhhhhccccCcceEEEEeccCCcccEEEEEeeccCC--ccHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcceeEEEe
Confidence            4556668999999999999754 59999999997642  22212345689999999999999999999999999999999


Q ss_pred             cccCCCCHH
Q 041300          704 EFLERGSLA  712 (716)
Q Consensus       704 Ey~~~GsL~  712 (716)
                      |||+.-=|+
T Consensus        81 E~~dhTvL~   89 (396)
T KOG0593|consen   81 EYCDHTVLH   89 (396)
T ss_pred             eecchHHHH
Confidence            999874443

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=99.11  E-value=1.5e-10  Score=124.05  Aligned_cols=90  Identities=18%  Similarity=0.263  Sum_probs=75.8

Q ss_pred             CCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          625 DFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      .|...++||+|+||.||+|.. .+++.||||++.+...... ...+.+.+|++++++++|||||++++++.+++..|+||
T Consensus         2 ~f~~~~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~~~~~~-~~~~~~~~E~~il~~~~h~~iv~~~~~~~~~~~~~lv~   80 (382)
T cd05625           2 MFVKIKTLGIGAFGEVCLARKVDTKALYAMKTLRKKDVLLR-NQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVM   80 (382)
T ss_pred             CcEEEEEEEeCCCEEEEEEEECCCCCEEEEEEEeHHHhhhH-HHHHHHHHHHHHHHhCCCCcCCeEEEEEEeCCEEEEEE
Confidence            477788999999999999964 4688999999875321111 13456889999999999999999999999999999999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      |||++|+|.+++
T Consensus        81 E~~~gg~L~~~l   92 (382)
T cd05625          81 DYIPGGDMMSLL   92 (382)
T ss_pred             eCCCCCcHHHHH
Confidence            999999999876

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=99.10  E-value=1.6e-10  Score=123.43  Aligned_cols=90  Identities=19%  Similarity=0.279  Sum_probs=75.8

Q ss_pred             CCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          625 DFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      +|...+.||+|+||.||+++. .+++.||||++.+...... ...+.+.+|++++++++|+|||++++++.+++..++||
T Consensus         2 ~y~~~~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~~~~~~-~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~   80 (376)
T cd05598           2 MFVKIKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVLMR-NQAAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVM   80 (376)
T ss_pred             CceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEcHHHHHhh-hhHHHHHHHHHHHHhCCCCCcceEEEEEEcCCEEEEEE
Confidence            578889999999999999964 4588999999865321111 12456889999999999999999999999999999999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      |||++|+|.+++
T Consensus        81 E~~~~g~L~~~i   92 (376)
T cd05598          81 DYIPGGDMMSLL   92 (376)
T ss_pred             eCCCCCcHHHHH
Confidence            999999999876

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>PHA02988 hypothetical protein; Provisional

Probab=99.10  E-value=2.6e-10  Score=116.53  Aligned_cols=86  Identities=23%  Similarity=0.370  Sum_probs=71.3

Q ss_pred             cccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEe----CCeeeEEEc
Q 041300          629 EYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSH----AQHSFLVYE  704 (716)
Q Consensus       629 ~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~----~~~~~lv~E  704 (716)
                      ...||+|++|.||+|.+ +|+.||||++........ ...+.|.+|++++.+++|||||+++|++.+    ....++|||
T Consensus        25 ~~~i~~g~~~~v~~~~~-~~~~vavK~~~~~~~~~~-~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~~~~~~~~~~lv~E  102 (283)
T PHA02988         25 SVLIKENDQNSIYKGIF-NNKEVIIRTFKKFHKGHK-VLIDITENEIKNLRRIDSNNILKIYGFIIDIVDDLPRLSLILE  102 (283)
T ss_pred             CeEEeeCCceEEEEEEE-CCEEEEEEeccccccccH-HHHHHHHHHHHHHHhcCCCCEEEEeeeEEecccCCCceEEEEE
Confidence            36799999999999988 688999999976432221 124678899999999999999999999977    346789999


Q ss_pred             ccCCCCHHhHhC
Q 041300          705 FLERGSLAAILS  716 (716)
Q Consensus       705 y~~~GsL~~~l~  716 (716)
                      ||++|+|.++++
T Consensus       103 y~~~g~L~~~l~  114 (283)
T PHA02988        103 YCTRGYLREVLD  114 (283)
T ss_pred             eCCCCcHHHHHh
Confidence            999999999873

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=99.10  E-value=1.7e-10  Score=122.51  Aligned_cols=90  Identities=24%  Similarity=0.366  Sum_probs=75.9

Q ss_pred             CCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          625 DFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      +|...++||+|+||+||++.. .+++.||||++.+...... .....+.+|++++.+++|++||++++++.+....|+||
T Consensus         2 ~y~~~~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~-~~~~~~~~E~~il~~~~~~~iv~~~~~~~~~~~~~lv~   80 (363)
T cd05628           2 DFESLKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLEK-EQVGHIRAERDILVEADSLWVVKMFYSFQDKLNLYLIM   80 (363)
T ss_pred             CceEeEEEEeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHh-hHHHHHHHHHHHHHhCCCCCcceEEEEEecCCeEEEEE
Confidence            678889999999999999964 4688999999975321111 13356889999999999999999999999999999999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      |||++|+|.+++
T Consensus        81 E~~~gg~L~~~l   92 (363)
T cd05628          81 EFLPGGDMMTLL   92 (363)
T ss_pred             cCCCCCcHHHHH
Confidence            999999999876

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=99.09  E-value=5.2e-11  Score=126.43  Aligned_cols=88  Identities=30%  Similarity=0.547  Sum_probs=72.4

Q ss_pred             CcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC------e
Q 041300          626 FDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ------H  698 (716)
Q Consensus       626 ~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~------~  698 (716)
                      +...+.+|+|+||.||+|+ -..|+.||||.+.......   .++.+.+|+++|++++|+|||++++.-.+..      .
T Consensus        15 W~~~e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~~~r---~~e~~~~EieilkKLnh~NIVk~f~iee~~~~~~~~~~   91 (732)
T KOG4250|consen   15 WEMDERLGKGAFGNVYRGRNKETGRLVAVKTFNKESSLR---PRERWCREIEILKKLNHPNIVKLFDIEETKFLGLVTRL   91 (732)
T ss_pred             eeehhhhcCCccceeeeecccccccchhHHhhhhhcccc---hHHHHHHHHHHHHHcCchhhhhhcccCCccccCccccc
Confidence            3445679999999999997 5579999999997643222   4567899999999999999999998876543      4


Q ss_pred             eeEEEcccCCCCHHhHhC
Q 041300          699 SFLVYEFLERGSLAAILS  716 (716)
Q Consensus       699 ~~lv~Ey~~~GsL~~~l~  716 (716)
                      ..+|||||.+|||+..|+
T Consensus        92 ~vlvmEyC~gGsL~~~L~  109 (732)
T KOG4250|consen   92 PVLVMEYCSGGSLRKVLN  109 (732)
T ss_pred             ceEEEeecCCCcHHHHhc
Confidence            689999999999998763

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=99.09  E-value=8.1e-11  Score=113.92  Aligned_cols=91  Identities=26%  Similarity=0.396  Sum_probs=71.2

Q ss_pred             hhcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC--Ce
Q 041300          622 ETNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA--QH  698 (716)
Q Consensus       622 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~--~~  698 (716)
                      ..+.|...+.|++|+||.||+|+- ++++.||.|+++...-. .. -.---.|||.++.+++|||||.+..+....  +.
T Consensus        74 sv~efe~lnrI~EGtyGiVYRakdk~t~eIVALKr~kmekek-~G-FPItsLREIniLl~~~H~NIV~vkEVVvG~~~d~  151 (419)
T KOG0663|consen   74 SVEEFEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEK-EG-FPITSLREINILLKARHPNIVEVKEVVVGSNMDK  151 (419)
T ss_pred             cHHHHHHHhhcccCcceeEEEeccCCcceeEEeeeccccccc-CC-CcchhHHHHHHHHhcCCCCeeeeEEEEeccccce
Confidence            345688889999999999999963 46789999999764311 11 122357999999999999999999988553  57


Q ss_pred             eeEEEcccCCCCHHhHh
Q 041300          699 SFLVYEFLERGSLAAIL  715 (716)
Q Consensus       699 ~~lv~Ey~~~GsL~~~l  715 (716)
                      +|||||||+. +|...+
T Consensus       152 iy~VMe~~Eh-DLksl~  167 (419)
T KOG0663|consen  152 IYIVMEYVEH-DLKSLM  167 (419)
T ss_pred             eeeeHHHHHh-hHHHHH
Confidence            9999999998 776654

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=99.08  E-value=1.2e-10  Score=117.57  Aligned_cols=86  Identities=44%  Similarity=0.688  Sum_probs=69.6

Q ss_pred             ccccccCCCceEEEEEEcC-----CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          628 AEYCIGNGGHGSVYRAELP-----SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       628 ~~~~ig~g~~g~v~~~~~~-----~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ..+.||.|+||.||+|.+.     .+..||||.++...   .....++|.+|++.+.+++||||++++|+|...+..++|
T Consensus         3 ~~~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~---~~~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~~~~~~lv   79 (259)
T PF07714_consen    3 LIKQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPSS---SEEEEEEFLNEIQILRKLRHPNIVKLYGFCIENEPLFLV   79 (259)
T ss_dssp             EEEEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTTS---SHHHHHHHHHHHHHHHTHSBTTBE-EEEEEESSSSEEEE
T ss_pred             EeeEEccCCCcEEEEEEEEcccCCCCEEEEEEEecccc---ccccceeeeeccccccccccccccccccccccccccccc
Confidence            3467999999999999775     25689999996521   112357899999999999999999999999988889999


Q ss_pred             EcccCCCCHHhHhC
Q 041300          703 YEFLERGSLAAILS  716 (716)
Q Consensus       703 ~Ey~~~GsL~~~l~  716 (716)
                      ||||++|+|.++|+
T Consensus        80 ~e~~~~g~L~~~L~   93 (259)
T PF07714_consen   80 MEYCPGGSLDDYLK   93 (259)
T ss_dssp             EE--TTEBHHHHHH
T ss_pred             cccccccccccccc
Confidence            99999999999873

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.08  E-value=1.3e-11  Score=123.51  Aligned_cols=214  Identities=27%  Similarity=0.250  Sum_probs=111.4

Q ss_pred             cCCCCcEEEccCCcCCCccc-hhhCCCCCCCEEEccCCcccccc--CCCCCCCCCCCEEEcccCcCcccCccc-ccCCCC
Q 041300          283 NCTSLIRVRLNGNNLTGNIS-EALGLYPNLTFIDLSRNNFYGEI--SSNWGKCPKLGTLNVSMNNITGGIPRE-IGNMSQ  358 (716)
Q Consensus       283 ~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~  358 (716)
                      ++.+|+.+.|++..+..... .....+++++.||||.|-+....  ......+|+|+.|+|+.|++....... -..+++
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            45566666666665542221 23455677777777777665421  122345677777777777765322211 124567


Q ss_pred             CCEEEccCCcccccc-CcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCc-hhhcCcCCCCEEEC
Q 041300          359 LQALDLSLNHIVGEI-PKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVP-ESLGNLLKLHYLGL  436 (716)
Q Consensus       359 L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L  436 (716)
                      |+.|.++.|.++... ...+..+|+|+.|+|.+|.....-......+..|+.|||++|++....- ...+.++.|..|++
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl  278 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL  278 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence            777777777776321 1223456777777777774322322333445566777777776653211 23445566666666


Q ss_pred             cCCcCcccC-ChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccC-CcCCcCCCCCCEEEccCCccc
Q 041300          437 SNNQFVLEL-PKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLI-PNCFEGMHGLSIIDISDNQLQ  514 (716)
Q Consensus       437 s~N~l~~~~-~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~-~~~~~~~~~L~~l~ls~N~l~  514 (716)
                      +.+.+.... |+.       ..++            -....++|++|+++.|++.... -..+..+++|+.+.+..|++.
T Consensus       279 s~tgi~si~~~d~-------~s~~------------kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  279 SSTGIASIAEPDV-------ESLD------------KTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             cccCcchhcCCCc-------cchh------------hhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            666554221 111       0000            0123455666666666654221 122334455666666666665


Q ss_pred             c
Q 041300          515 G  515 (716)
Q Consensus       515 ~  515 (716)
                      -
T Consensus       340 ~  340 (505)
T KOG3207|consen  340 K  340 (505)
T ss_pred             c
Confidence            3

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.08  E-value=2.6e-11  Score=115.32  Aligned_cols=206  Identities=24%  Similarity=0.224  Sum_probs=134.6

Q ss_pred             CCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCc---CcccCcccc
Q 041300          277 IPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNN---ITGGIPREI  353 (716)
Q Consensus       277 ~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~  353 (716)
                      .|-.+.-+.+|+.+.++.+.-..+ .+....-|.|+++...+..+....  .+-....+  .|...-.   .+|.....+
T Consensus       206 l~f~l~~f~~l~~~~~s~~~~~~i-~~~~~~kptl~t~~v~~s~~~~~~--~l~pe~~~--~D~~~~E~~t~~G~~~~~~  280 (490)
T KOG1259|consen  206 LSFNLNAFRNLKTLKFSALSTENI-VDIELLKPTLQTICVHNTTIQDVP--SLLPETIL--ADPSGSEPSTSNGSALVSA  280 (490)
T ss_pred             cccchHHhhhhheeeeeccchhhe-eceeecCchhheeeeecccccccc--cccchhhh--cCccCCCCCccCCceEEec
Confidence            333444556777777776643322 222233467777777665544221  11111111  1211111   122222233


Q ss_pred             cCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCE
Q 041300          354 GNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHY  433 (716)
Q Consensus       354 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  433 (716)
                      .....|+++||++|.|+ .+.++..-+|.++.|++++|.+...  +.+..+++|+.||||+|.++. +..+-..+-+.++
T Consensus       281 dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKt  356 (490)
T KOG1259|consen  281 DTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKT  356 (490)
T ss_pred             chHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHh-hhhhHhhhcCEee
Confidence            34467889999999998 5667777788999999999999743  347888999999999999873 4445556778899


Q ss_pred             EECcCCcCcccCChhhhCCCCCCEEECCCCcCccc-cchhccCCCCCCEEECcCCcCcccC
Q 041300          434 LGLSNNQFVLELPKELEKLVQLSELDASHNLFGGE-IPFQICSLKSLEKLNLSHNNLSGLI  493 (716)
Q Consensus       434 L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~-~p~~~~~l~~L~~L~ls~N~l~~~~  493 (716)
                      |.|+.|.+.  .-..++++-+|..||+++|+|... -...++++|.|+.+.|.+|.+++.+
T Consensus       357 L~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  357 LKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             eehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence            999999885  334577788899999999998643 2346788999999999999998653

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=99.08  E-value=2.5e-11  Score=115.28  Aligned_cols=85  Identities=31%  Similarity=0.525  Sum_probs=74.9

Q ss_pred             CcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEc
Q 041300          626 FDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYE  704 (716)
Q Consensus       626 ~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~E  704 (716)
                      |+...++|+|+||.||++. ...|..||+|+....      .+.++..+||.+|++++.|.+|++||.|-.....|+|||
T Consensus        35 FDi~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV~------sDLQEIIKEISIMQQC~S~yVVKYYGSYFK~sDLWIVME  108 (502)
T KOG0574|consen   35 FDIVGKLGEGSYGSVHKAIHRESGHVLAIKKVPVD------TDLQEIIKEISIMQQCKSKYVVKYYGSYFKHSDLWIVME  108 (502)
T ss_pred             HHHHHHhcCCcchHHHHHHHhccCcEEEEEecCcc------chHHHHHHHHHHHHHcCCchhhhhhhhhccCCceEeehh
Confidence            6667789999999999994 457999999998642      156889999999999999999999999999999999999


Q ss_pred             ccCCCCHHhHhC
Q 041300          705 FLERGSLAAILS  716 (716)
Q Consensus       705 y~~~GsL~~~l~  716 (716)
                      ||--|+..|.+|
T Consensus       109 YCGAGSiSDI~R  120 (502)
T KOG0574|consen  109 YCGAGSISDIMR  120 (502)
T ss_pred             hcCCCcHHHHHH
Confidence            999999998764

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=99.08  E-value=4.3e-10  Score=117.89  Aligned_cols=89  Identities=30%  Similarity=0.464  Sum_probs=76.7

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ++|...+.||+|+||.||++... ++..+|+|.+....   .......+.+|++++++++|||||+++++|.+++..++|
T Consensus         5 ~~y~~~~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv   81 (333)
T cd06650           5 DDFEKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEI---KPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISIC   81 (333)
T ss_pred             hhhheeccccCCCCEEEEEEEECCCCcEEEEEEeeccc---CHHHHHHHHHHHHHHHHCCCCcccceeEEEEECCEEEEE
Confidence            56888899999999999999754 57889999886532   111346799999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      |||+++|+|.+++
T Consensus        82 ~e~~~~~~L~~~l   94 (333)
T cd06650          82 MEHMDGGSLDQVL   94 (333)
T ss_pred             EecCCCCcHHHHH
Confidence            9999999999886

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=99.07  E-value=1.6e-10  Score=123.08  Aligned_cols=93  Identities=25%  Similarity=0.444  Sum_probs=76.7

Q ss_pred             HhhcCCcccccccCCCceEEEEEEc------CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEE
Q 041300          621 RETNDFDAEYCIGNGGHGSVYRAEL------PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFC  693 (716)
Q Consensus       621 ~~~~~~~~~~~ig~g~~g~v~~~~~------~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~  693 (716)
                      ...++|...+.||+|+||.||+|..      .++..||||++.....   ......+.+|+++++.+ +|+|||+++|+|
T Consensus        35 ~~~~~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~il~~l~~h~nIv~~~~~~  111 (374)
T cd05106          35 FPRDNLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAH---TDEREALMSELKILSHLGQHKNIVNLLGAC  111 (374)
T ss_pred             ccHHHceehheecCCCcccEEEEEEecCCcccccceeEEEeccCCCC---HHHHHHHHHHHHHHHhhccCCceeeEeeEe
Confidence            3445788899999999999999863      2345799999975321   11345688999999999 899999999999


Q ss_pred             EeCCeeeEEEcccCCCCHHhHhC
Q 041300          694 SHAQHSFLVYEFLERGSLAAILS  716 (716)
Q Consensus       694 ~~~~~~~lv~Ey~~~GsL~~~l~  716 (716)
                      ...+..++|||||++|+|.++++
T Consensus       112 ~~~~~~~lv~ey~~~g~L~~~l~  134 (374)
T cd05106         112 THGGPVLVITEYCCYGDLLNFLR  134 (374)
T ss_pred             cCCCCeEEeHhhccCCcHHHHHH
Confidence            99999999999999999999873

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.07  E-value=1.9e-11  Score=119.27  Aligned_cols=184  Identities=27%  Similarity=0.320  Sum_probs=111.2

Q ss_pred             CCCCCCCEEEcccCcCcccCccc----ccCCCCCCEEEccCCccccccC-------------cccCCCCCCcEEEccCCc
Q 041300          330 GKCPKLGTLNVSMNNITGGIPRE----IGNMSQLQALDLSLNHIVGEIP-------------KELGKLNSLTKLILRGNQ  392 (716)
Q Consensus       330 ~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~-------------~~~~~l~~L~~L~L~~N~  392 (716)
                      ..+++|++||||.|-+....+..    +.++..|+.|.|.+|.+.-...             .....-+.|+++...+|+
T Consensus        89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr  168 (382)
T KOG1909|consen   89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR  168 (382)
T ss_pred             hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence            34456666666666554333332    2345566666666666542111             112334567777777777


Q ss_pred             ccccC----CcccCCCCCCCEEEccCCcCCcc----CchhhcCcCCCCEEECcCCcCccc----CChhhhCCCCCCEEEC
Q 041300          393 LTGRL----PTEIGSLIELEYLDFSANKFNNS----VPESLGNLLKLHYLGLSNNQFVLE----LPKELEKLVQLSELDA  460 (716)
Q Consensus       393 l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~l  460 (716)
                      +....    ...|...+.|+.+.++.|.|...    ....|..+++|+.|||.+|.++..    +...+..+++|++|++
T Consensus       169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l  248 (382)
T KOG1909|consen  169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL  248 (382)
T ss_pred             cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence            65321    12345567777777777776422    224566778888888888877632    3345566777888888


Q ss_pred             CCCcCccccchhc-----cCCCCCCEEECcCCcCccc----CCcCCcCCCCCCEEEccCCcc
Q 041300          461 SHNLFGGEIPFQI-----CSLKSLEKLNLSHNNLSGL----IPNCFEGMHGLSIIDISDNQL  513 (716)
Q Consensus       461 s~N~l~~~~p~~~-----~~l~~L~~L~ls~N~l~~~----~~~~~~~~~~L~~l~ls~N~l  513 (716)
                      ++|.+...-..+|     ...|+|+.|.+.+|.|+..    +..++...+.|..|+|++|++
T Consensus       249 ~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  249 GDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             cccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            8887765433322     2367888888888887632    233455577788888888887

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=99.07  E-value=2.7e-10  Score=116.72  Aligned_cols=89  Identities=22%  Similarity=0.316  Sum_probs=74.0

Q ss_pred             CcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEc
Q 041300          626 FDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYE  704 (716)
Q Consensus       626 ~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~E  704 (716)
                      |...++||+|+||+||++.. .+++.||||++......... ....+.+|++++++++|||||++++++.+++..++|||
T Consensus         2 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~-~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   80 (285)
T cd05605           2 FRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRK-GEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLT   80 (285)
T ss_pred             ceEEEEEecCCCeEEEEEEEcCCCceEEEEEEehhhhhhhh-hHHHHHHHHHHHHhcCCCCEeeeeeeecCCCeEEEEEe
Confidence            66678899999999999964 46889999999753222111 23457889999999999999999999999999999999


Q ss_pred             ccCCCCHHhHh
Q 041300          705 FLERGSLAAIL  715 (716)
Q Consensus       705 y~~~GsL~~~l  715 (716)
                      ||++|+|.+++
T Consensus        81 ~~~~~~L~~~~   91 (285)
T cd05605          81 LMNGGDLKFHI   91 (285)
T ss_pred             ccCCCcHHHHH
Confidence            99999998775

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.07  E-value=3e-10  Score=118.98  Aligned_cols=91  Identities=24%  Similarity=0.352  Sum_probs=79.6

Q ss_pred             hcCCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL  701 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l  701 (716)
                      ...|.....||+|.||+|..|. ...+..||+|.+.++.....  ..+.+.+|+++|..++|||||+++.+...+...|+
T Consensus        55 vg~y~i~~tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln~~--~~~k~~rev~imk~l~HPnIvkl~~v~~t~~~lyl  132 (596)
T KOG0586|consen   55 VGLYVIIKTIGKGNFAKVKLARHILTGTEVAIKIIDKTQLNPS--KRQKLGREVDIMKSLNHPNIVKLFSVIETEATLYL  132 (596)
T ss_pred             ccceeeeeeeccceeEEEEeeEecCCCceEEEEEehhcccChH--HHHHHHHHHHHHHhcCCcceeeeeeeeeecceeEE
Confidence            4578889999999999999995 44689999999987543222  34568999999999999999999999999999999


Q ss_pred             EEcccCCCCHHhHh
Q 041300          702 VYEFLERGSLAAIL  715 (716)
Q Consensus       702 v~Ey~~~GsL~~~l  715 (716)
                      ||||+.+|++++||
T Consensus       133 V~eya~~ge~~~yl  146 (596)
T KOG0586|consen  133 VMEYASGGELFDYL  146 (596)
T ss_pred             EEEeccCchhHHHH
Confidence            99999999999997

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.07  E-value=1.5e-10  Score=106.27  Aligned_cols=15  Identities=33%  Similarity=0.417  Sum_probs=4.3

Q ss_pred             CCCCCEEECcCCcCc
Q 041300          476 LKSLEKLNLSHNNLS  490 (716)
Q Consensus       476 l~~L~~L~ls~N~l~  490 (716)
                      +++|+.|++.+|.++
T Consensus       112 l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen  112 LPKLRVLSLEGNPVC  126 (175)
T ss_dssp             -TT--EEE-TT-GGG
T ss_pred             CCCcceeeccCCccc
Confidence            344444444444443

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=99.06  E-value=5.3e-10  Score=117.18  Aligned_cols=89  Identities=30%  Similarity=0.442  Sum_probs=76.6

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ++|...+.||+|+||.||++... ++..||+|.+....   .......+.+|++++++++|||||++++++..++..++|
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv   81 (331)
T cd06649           5 DDFERISELGAGNGGVVTKVQHKPSGLIMARKLIHLEI---KPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISIC   81 (331)
T ss_pred             ccceEEEeecCCCCEEEEEEEECCCCcEEEEEEeeccc---CHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEE
Confidence            46888899999999999999754 57889999987531   111346799999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      |||+++|+|.+++
T Consensus        82 ~e~~~~~~L~~~l   94 (331)
T cd06649          82 MEHMDGGSLDQVL   94 (331)
T ss_pred             eecCCCCcHHHHH
Confidence            9999999999876

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=99.06  E-value=2e-10  Score=122.09  Aligned_cols=92  Identities=23%  Similarity=0.316  Sum_probs=76.7

Q ss_pred             hcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL  701 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l  701 (716)
                      ..+|...+.||+|+||.||+++.. ++..||||++.+...... .....+.+|+++++.++||||+++++++.+++..|+
T Consensus        42 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~-~~~~~~~~e~~il~~~~h~~iv~~~~~~~~~~~~~l  120 (370)
T cd05596          42 AEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKR-SDSAFFWEERDIMAHANSEWIVQLHYAFQDDKYLYM  120 (370)
T ss_pred             HHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhh-hhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEEE
Confidence            457888999999999999999654 588999999865221111 133457899999999999999999999999999999


Q ss_pred             EEcccCCCCHHhHh
Q 041300          702 VYEFLERGSLAAIL  715 (716)
Q Consensus       702 v~Ey~~~GsL~~~l  715 (716)
                      |||||++|+|.+++
T Consensus       121 v~Ey~~gg~L~~~l  134 (370)
T cd05596         121 VMEYMPGGDLVNLM  134 (370)
T ss_pred             EEcCCCCCcHHHHH
Confidence            99999999999876

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=99.06  E-value=2.6e-10  Score=121.08  Aligned_cols=93  Identities=20%  Similarity=0.321  Sum_probs=77.5

Q ss_pred             hhcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeee
Q 041300          622 ETNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSF  700 (716)
Q Consensus       622 ~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~  700 (716)
                      ...+|...++||+|+||.||+++.. +++.||+|++.+...... ...+.+.+|+++++.++|||||++++++.+++..|
T Consensus        41 ~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~~-~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~~~~  119 (370)
T cd05621          41 KAEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKR-SDSAFFWEERDIMAFANSPWVVQLFCAFQDDKYLY  119 (370)
T ss_pred             CHHHCeEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhh-hhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEE
Confidence            3467888999999999999999754 578999999865221111 13456889999999999999999999999999999


Q ss_pred             EEEcccCCCCHHhHh
Q 041300          701 LVYEFLERGSLAAIL  715 (716)
Q Consensus       701 lv~Ey~~~GsL~~~l  715 (716)
                      +|||||++|+|.+++
T Consensus       120 lv~Ey~~gg~L~~~l  134 (370)
T cd05621         120 MVMEYMPGGDLVNLM  134 (370)
T ss_pred             EEEcCCCCCcHHHHH
Confidence            999999999999876

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.06  E-value=9.2e-11  Score=107.70  Aligned_cols=110  Identities=23%  Similarity=0.317  Sum_probs=37.3

Q ss_pred             CCCCCCCcEEECCCCCccccCccccc-CCCCCCEEECcCCcCcccCCccccCCCCCCEEEcccccCccCCCccc-cCCCC
Q 041300           72 FSSFPQLVHLDLSLNGFFGTIPSQIG-NLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEV-CQLSS  149 (716)
Q Consensus        72 f~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~  149 (716)
                      +.+..++++|+|.+|.|..+.  .++ .+.+|+.|+|++|.|+.. + .+..++.|++|++++|.|+.. .+.+ ..+++
T Consensus        15 ~~n~~~~~~L~L~~n~I~~Ie--~L~~~l~~L~~L~Ls~N~I~~l-~-~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~   89 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTIE--NLGATLDKLEVLDLSNNQITKL-E-GLPGLPRLKTLDLSNNRISSI-SEGLDKNLPN   89 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT
T ss_pred             ccccccccccccccccccccc--chhhhhcCCCEEECCCCCCccc-c-CccChhhhhhcccCCCCCCcc-ccchHHhCCc
Confidence            445556778888888876432  344 467788888888888743 2 466778888888888888743 3334 35778


Q ss_pred             CceeecccccccCCCC-ccccCCcCCcEEEeecccccc
Q 041300          150 IEELFLYSNHLNGSLP-PFLGNLSNIVRLYINNNSLSG  186 (716)
Q Consensus       150 L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~n~l~~  186 (716)
                      |++|+|++|.|..... ..++.+++|+.|+|.+|+++.
T Consensus        90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~  127 (175)
T PF14580_consen   90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE  127 (175)
T ss_dssp             --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred             CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence            8888888888764332 456678888888888888763

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=99.06  E-value=3.7e-10  Score=115.71  Aligned_cols=89  Identities=21%  Similarity=0.314  Sum_probs=74.2

Q ss_pred             CcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEc
Q 041300          626 FDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYE  704 (716)
Q Consensus       626 ~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~E  704 (716)
                      |...+.||+|+||.||++.. .+++.||||.+........ .....+.+|++++.+++|++++++.+++.+.+..++|||
T Consensus         2 f~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~-~~~~~~~~E~~il~~l~~~~iv~~~~~~~~~~~~~lv~e   80 (285)
T cd05631           2 FRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKR-KGEAMALNEKRILEKVNSRFVVSLAYAYETKDALCLVLT   80 (285)
T ss_pred             ceEEEEEecCCCEEEEEEEEecCCceEEEEEeeHhhhhhh-hhHHHHHHHHHHHHhcCCCcEEEEEEEEccCCeEEEEEE
Confidence            66678899999999999965 4689999999875322211 133468899999999999999999999999999999999


Q ss_pred             ccCCCCHHhHh
Q 041300          705 FLERGSLAAIL  715 (716)
Q Consensus       705 y~~~GsL~~~l  715 (716)
                      ||++|+|.+++
T Consensus        81 ~~~~g~L~~~~   91 (285)
T cd05631          81 IMNGGDLKFHI   91 (285)
T ss_pred             ecCCCcHHHHH
Confidence            99999998765

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=99.05  E-value=3.9e-10  Score=117.74  Aligned_cols=85  Identities=21%  Similarity=0.262  Sum_probs=71.0

Q ss_pred             ccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEcccCC
Q 041300          630 YCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLER  708 (716)
Q Consensus       630 ~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~  708 (716)
                      ++||+|+||.||++.. .+|+.||||++........ .....+.+|++++++++||||+++++++..++..++||||+++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~-~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~~~   79 (323)
T cd05571           1 KLLGKGTFGKVILVREKATGKYYAMKILKKEVIIAK-DEVAHTLTESRVLQNTRHPFLTALKYSFQTHDRLCFVMEYANG   79 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhh-HHHHHHHHHHHHHHhCCCCCCCCEEEEEEcCCEEEEEEeCCCC
Confidence            3689999999999964 4688999999875321111 1345688999999999999999999999999999999999999


Q ss_pred             CCHHhHh
Q 041300          709 GSLAAIL  715 (716)
Q Consensus       709 GsL~~~l  715 (716)
                      |+|.+++
T Consensus        80 ~~L~~~l   86 (323)
T cd05571          80 GELFFHL   86 (323)
T ss_pred             CcHHHHH
Confidence            9998875

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.05  E-value=3.8e-10  Score=113.52  Aligned_cols=90  Identities=31%  Similarity=0.458  Sum_probs=78.7

Q ss_pred             hcCCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL  701 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l  701 (716)
                      ..+|...++||.|.-+.||+|+ .+.++.||||++.-.+..   ....+.++|+..|+-++|||||+++..+..+.+.|+
T Consensus        25 ~~~YeL~e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~---~~ld~l~kE~~~msl~~HPNIv~~~~sFvv~~~LWv  101 (516)
T KOG0582|consen   25 AKDYELQEVIGVGASAVVYLARCIPTNEVVAIKIINLEKCN---NDLDALRKEVQTMSLIDHPNIVTYHCSFVVDSELWV  101 (516)
T ss_pred             ccceeEEEEEeccceeEeeeeeecccCCEEEEEEeehhhhh---hhHHHHHHHHHHhhhcCCCCcceEEEEEEecceeEE
Confidence            3578889999999999999995 567899999999763322   134678999999999999999999999999999999


Q ss_pred             EEcccCCCCHHhHh
Q 041300          702 VYEFLERGSLAAIL  715 (716)
Q Consensus       702 v~Ey~~~GsL~~~l  715 (716)
                      ||.||.+|++.+.+
T Consensus       102 VmpfMa~GS~ldIi  115 (516)
T KOG0582|consen  102 VMPFMAGGSLLDII  115 (516)
T ss_pred             eehhhcCCcHHHHH
Confidence            99999999999876

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=99.05  E-value=5e-10  Score=127.34  Aligned_cols=91  Identities=30%  Similarity=0.512  Sum_probs=77.5

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ++|...++||+|+||.||+|... +++.||||++........ ...+.|.+|++++++++|||+|++++++.+++..++|
T Consensus         2 grYeIi~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~~e-~~~~rflrEi~ILs~L~HPNIVkl~~v~~d~~~lyLV   80 (932)
T PRK13184          2 QRYDIIRLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSENP-LLKKRFLREAKIAADLIHPGIVPVYSICSDGDPVYYT   80 (932)
T ss_pred             CCeEEEEEEecCCCEEEEEEEECCCCcEEEEEEECcccccCH-HHHHHHHHHHHHHHhCCCcCcCeEEEEEeeCCEEEEE
Confidence            46788899999999999999654 588999999975332222 2356799999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      |||+++|+|.+++
T Consensus        81 MEY~eGGSL~~lL   93 (932)
T PRK13184         81 MPYIEGYTLKSLL   93 (932)
T ss_pred             EEcCCCCCHHHHH
Confidence            9999999999876

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=99.05  E-value=3.9e-10  Score=117.66  Aligned_cols=85  Identities=20%  Similarity=0.252  Sum_probs=70.8

Q ss_pred             ccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEcccCC
Q 041300          630 YCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLER  708 (716)
Q Consensus       630 ~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~  708 (716)
                      ++||+|+||.||++.. .+|..||+|++........ .....+.+|++++++++||||+++++++...+..++|||||++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~-~~~~~~~~E~~~l~~l~hp~i~~~~~~~~~~~~~~lv~E~~~~   79 (323)
T cd05595           1 KLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAK-DEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANG   79 (323)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhh-HHHHHHHHHHHHHHhCCCCCCcceeeEEecCCEEEEEEeCCCC
Confidence            3689999999999964 4689999999975322111 1345678899999999999999999999999999999999999


Q ss_pred             CCHHhHh
Q 041300          709 GSLAAIL  715 (716)
Q Consensus       709 GsL~~~l  715 (716)
                      |+|.+++
T Consensus        80 ~~L~~~l   86 (323)
T cd05595          80 GELFFHL   86 (323)
T ss_pred             CcHHHHH
Confidence            9998765

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=99.05  E-value=5.2e-10  Score=113.34  Aligned_cols=89  Identities=28%  Similarity=0.471  Sum_probs=75.8

Q ss_pred             cCCcccccccCCCceEEEEEEcCC----CCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCee
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELPS----GEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHS  699 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~~----~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~  699 (716)
                      ++|...+.||+|+||.||+|.+..    ...||||.+....   ......+|.+|+.++.+++||||+++++++...+..
T Consensus         4 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~---~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   80 (266)
T cd05033           4 SYVTIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGS---SDKQRLDFLTEASIMGQFDHPNIIRLEGVVTKSRPV   80 (266)
T ss_pred             HHceeeeEecCCccceEEEEEEccCCCCcceEEEEEcCCCC---ChHHHHHHHHHHHHHHhCCCCCcceEeEEEecCCce
Confidence            468889999999999999997642    3579999987532   122456799999999999999999999999999999


Q ss_pred             eEEEcccCCCCHHhHh
Q 041300          700 FLVYEFLERGSLAAIL  715 (716)
Q Consensus       700 ~lv~Ey~~~GsL~~~l  715 (716)
                      ++||||+++|+|.+++
T Consensus        81 ~iv~e~~~~~~L~~~~   96 (266)
T cd05033          81 MIITEYMENGSLDKFL   96 (266)
T ss_pred             EEEEEcCCCCCHHHHH
Confidence            9999999999999886

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=99.05  E-value=4.1e-10  Score=117.95  Aligned_cols=90  Identities=24%  Similarity=0.342  Sum_probs=75.6

Q ss_pred             CCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          625 DFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      +|...+.||+|+||.||+++.. +++.||||++.+...... ...+.|.+|+.++..++|+||+++++++.+++..|+||
T Consensus         2 ~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~-~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (331)
T cd05597           2 DFEILKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKR-AETACFREERDVLVNGDRRWITNLHYAFQDENNLYLVM   80 (331)
T ss_pred             CceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhh-hhHHHHHHHHHHHHhCCCCCCCceEEEEecCCeEEEEE
Confidence            5778899999999999999754 588999999864221111 13456889999999999999999999999999999999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      ||+++|+|.+++
T Consensus        81 e~~~g~~L~~~l   92 (331)
T cd05597          81 DYYVGGDLLTLL   92 (331)
T ss_pred             ecCCCCcHHHHH
Confidence            999999999876

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=99.05  E-value=4.5e-10  Score=116.65  Aligned_cols=83  Identities=22%  Similarity=0.319  Sum_probs=69.9

Q ss_pred             ccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEcccCCCC
Q 041300          632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGS  710 (716)
Q Consensus       632 ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~Gs  710 (716)
                      ||+|+||.||++... +++.||+|++........ .....+.+|++++.+++|||||++++++..++..|+||||+++|+
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~   79 (312)
T cd05585           1 IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIVSR-SEVTHTLAERTVLAQVNCPFIVPLKFSFQSPEKLYLVLAFINGGE   79 (312)
T ss_pred             CCcCCCeEEEEEEECCCCCEEEEEEEEHHHhhhh-hHHHHHHHHHHHHHhCCCCcEeceeeEEecCCeEEEEEcCCCCCc
Confidence            699999999999654 578999999875321111 134568899999999999999999999999999999999999999


Q ss_pred             HHhHh
Q 041300          711 LAAIL  715 (716)
Q Consensus       711 L~~~l  715 (716)
                      |.+++
T Consensus        80 L~~~l   84 (312)
T cd05585          80 LFHHL   84 (312)
T ss_pred             HHHHH
Confidence            99876

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=99.05  E-value=2.3e-10  Score=109.16  Aligned_cols=92  Identities=24%  Similarity=0.371  Sum_probs=78.1

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      .+|...+.+|.|+||+|..++.+ +|..+|+|++.+...-..+ ..+...+|..+++.+.||.+|++++.+.+.+..|||
T Consensus        44 ~dfe~~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~~vVklK-QveH~~nEk~vL~~v~~PFlv~l~~t~~d~~~lymv  122 (355)
T KOG0616|consen   44 QDFERLKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQKVVKLK-QVEHTHNEKRVLKAVSHPFLVKLYGTFKDNSNLYMV  122 (355)
T ss_pred             hhhhheeeeccCccceEEEEEEccCCceeehhhcCHHHHHHHH-HHHHHhhHHHHHhhccCceeEEEEEeeccCCeEEEE
Confidence            35777889999999999999654 5889999999875433322 234567899999999999999999999999999999


Q ss_pred             EcccCCCCHHhHhC
Q 041300          703 YEFLERGSLAAILS  716 (716)
Q Consensus       703 ~Ey~~~GsL~~~l~  716 (716)
                      |||++||.|+.+||
T Consensus       123 meyv~GGElFS~Lr  136 (355)
T KOG0616|consen  123 MEYVPGGELFSYLR  136 (355)
T ss_pred             EeccCCccHHHHHH
Confidence            99999999999985

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=99.04  E-value=5.3e-10  Score=113.43  Aligned_cols=92  Identities=25%  Similarity=0.314  Sum_probs=78.3

Q ss_pred             HHhhcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCe
Q 041300          620 VRETNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQH  698 (716)
Q Consensus       620 ~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~  698 (716)
                      +.++.++.....||+|+||.||+|.. +++..||+|.+....    ....+.+.+|++++++++|+||+++++++..++.
T Consensus         4 ~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~----~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~   79 (268)
T cd06624           4 EYEYDENGERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERD----SRYVQPLHEEIALHSYLKHRNIVQYLGSDSENGF   79 (268)
T ss_pred             ccccccCCceEEEecCCceEEEEeEecCCCcEEEEEEecCCC----HHHHHHHHHHHHHHHhcCCCCeeeeeeeeccCCE
Confidence            45566777778999999999999974 457889999886521    1234679999999999999999999999999999


Q ss_pred             eeEEEcccCCCCHHhHh
Q 041300          699 SFLVYEFLERGSLAAIL  715 (716)
Q Consensus       699 ~~lv~Ey~~~GsL~~~l  715 (716)
                      .++|+||+++|+|.+++
T Consensus        80 ~~lv~e~~~~~~L~~~l   96 (268)
T cd06624          80 FKIFMEQVPGGSLSALL   96 (268)
T ss_pred             EEEEEecCCCCCHHHHH
Confidence            99999999999999876

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=99.04  E-value=3.8e-10  Score=117.83  Aligned_cols=86  Identities=23%  Similarity=0.381  Sum_probs=70.7

Q ss_pred             ccccCCCceEEEEEEc----CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEcc
Q 041300          630 YCIGNGGHGSVYRAEL----PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEF  705 (716)
Q Consensus       630 ~~ig~g~~g~v~~~~~----~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  705 (716)
                      +.||+|+||.||+++.    ..++.||||++..............+.+|++++++++||||+++++++..++..|+||||
T Consensus         2 ~~lg~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~e~   81 (323)
T cd05584           2 KVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVDLIYAFQTGGKLYLILEY   81 (323)
T ss_pred             ceeeecCCeEEEEEEEcccCCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCchhceeeEEecCCeEEEEEeC
Confidence            4699999999999964    357899999987532111111334678999999999999999999999999999999999


Q ss_pred             cCCCCHHhHh
Q 041300          706 LERGSLAAIL  715 (716)
Q Consensus       706 ~~~GsL~~~l  715 (716)
                      +++|+|.+++
T Consensus        82 ~~~~~L~~~~   91 (323)
T cd05584          82 LSGGELFMHL   91 (323)
T ss_pred             CCCchHHHHH
Confidence            9999998876

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=99.04  E-value=2.6e-10  Score=113.68  Aligned_cols=90  Identities=24%  Similarity=0.307  Sum_probs=74.8

Q ss_pred             CCcccccccCCCceEEEEEEcCC-CCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          625 DFDAEYCIGNGGHGSVYRAELPS-GEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~~~-~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      .|...+.+|.|.-|+||.++..+ +...|+|++.+....... .....+.|-+||+.++||.++.||+.++.+...++||
T Consensus        78 ~f~llk~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~l~~rk-Kl~Ra~tE~eIL~~lDHPFlPTLYa~fet~~~~cl~m  156 (459)
T KOG0610|consen   78 HFRLLKRLGCGDIGTVYLVELRGTNCLFAMKVMDKESLASRK-KLKRAQTEREILSLLDHPFLPTLYASFETDKYSCLVM  156 (459)
T ss_pred             HHHHHHHcCCCCceeEEEEEecCCCceEEEEEecHHHHhhhh-HHHHHHHHHHHHHhcCCCccchhhheeeccceeEEEE
Confidence            45667789999999999998765 578999999875432221 2345677888999999999999999999999999999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      |||+||+|+...
T Consensus       157 eyCpGGdL~~Lr  168 (459)
T KOG0610|consen  157 EYCPGGDLHSLR  168 (459)
T ss_pred             ecCCCccHHHHH
Confidence            999999998765

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=99.04  E-value=4e-10  Score=118.08  Aligned_cols=90  Identities=21%  Similarity=0.274  Sum_probs=75.6

Q ss_pred             CCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          625 DFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      +|...+.||+|+||.||+++.. +++.||+|++.+...... .....+..|+.++..++|++|+++++++.+++..|+||
T Consensus         2 ~y~i~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~-~~~~~~~~e~~~l~~~~~~~i~~l~~~~~~~~~~~lv~   80 (331)
T cd05624           2 DFEIIKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKR-AETACFREERNVLVNGDCQWITTLHYAFQDENYLYLVM   80 (331)
T ss_pred             CceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHHHhh-HHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEE
Confidence            5788899999999999999754 578899999865321111 13455888999999999999999999999999999999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      ||+++|+|.+++
T Consensus        81 Ey~~gg~L~~~l   92 (331)
T cd05624          81 DYYVGGDLLTLL   92 (331)
T ss_pred             eCCCCCcHHHHH
Confidence            999999999886

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.04  E-value=2.8e-11  Score=121.17  Aligned_cols=185  Identities=22%  Similarity=0.224  Sum_probs=97.2

Q ss_pred             CCCCCCEEEccCCccccccC-CCCCCCCCCCEEEcccCcCcccCc--ccccCCCCCCEEEccCCccccccCcccCCCCCC
Q 041300          307 LYPNLTFIDLSRNNFYGEIS-SNWGKCPKLGTLNVSMNNITGGIP--REIGNMSQLQALDLSLNHIVGEIPKELGKLNSL  383 (716)
Q Consensus       307 ~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  383 (716)
                      .+.+|+++.|.+..+..... .....|++++.|||+.|-+....+  .....+++|+.|+++.|++........      
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~------  192 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT------  192 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc------
Confidence            45667777777766653221 234456667777777666553221  122345666666666665542111110      


Q ss_pred             cEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCc-hhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCC
Q 041300          384 TKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVP-ESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASH  462 (716)
Q Consensus       384 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~  462 (716)
                                       -..++.|+.|.|+.|.++...- .....+++|+.|+|..|.....-.....-+..|++|||++
T Consensus       193 -----------------~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~  255 (505)
T KOG3207|consen  193 -----------------TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSN  255 (505)
T ss_pred             -----------------hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccC
Confidence                             0123344455555554442111 1223445555555555532222222233345566666666


Q ss_pred             CcCccccc-hhccCCCCCCEEECcCCcCccc-CCcC-----CcCCCCCCEEEccCCccc
Q 041300          463 NLFGGEIP-FQICSLKSLEKLNLSHNNLSGL-IPNC-----FEGMHGLSIIDISDNQLQ  514 (716)
Q Consensus       463 N~l~~~~p-~~~~~l~~L~~L~ls~N~l~~~-~~~~-----~~~~~~L~~l~ls~N~l~  514 (716)
                      |++..... ...+.++.|+.|+++.+.+..+ .|++     ...+++|+.|+++.|++.
T Consensus       256 N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~  314 (505)
T KOG3207|consen  256 NNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR  314 (505)
T ss_pred             CcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence            66543221 2345667777777777777643 2333     345788999999999985

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=99.04  E-value=4.6e-10  Score=119.11  Aligned_cols=90  Identities=23%  Similarity=0.380  Sum_probs=75.8

Q ss_pred             CCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          625 DFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      +|...+.||+|+||+||++... +++.||||++........ .....+.+|++++.+++||++|++++++.+++..|+||
T Consensus         2 ~f~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~-~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~~~lv~   80 (360)
T cd05627           2 DFESLKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLEK-EQVAHIRAERDILVEADGAWVVKMFYSFQDKRNLYLIM   80 (360)
T ss_pred             CceEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHHhhh-hhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEE
Confidence            5778889999999999999654 588999999875321111 13456889999999999999999999999999999999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      |||++|+|.+++
T Consensus        81 E~~~gg~L~~~l   92 (360)
T cd05627          81 EFLPGGDMMTLL   92 (360)
T ss_pred             eCCCCccHHHHH
Confidence            999999999876

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=99.03  E-value=8.9e-10  Score=114.23  Aligned_cols=88  Identities=30%  Similarity=0.409  Sum_probs=75.3

Q ss_pred             CCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          625 DFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      +|...+.||+|+||.||++... ++..+|+|.+....   ......++.+|++++.+++||||+++++++..++..++||
T Consensus         2 ~~~~~~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~   78 (308)
T cd06615           2 DFEKLGELGAGNGGVVTKVLHRPSGLIMARKLIHLEI---KPAIRNQIIRELKVLHECNSPYIVGFYGAFYSDGEISICM   78 (308)
T ss_pred             CceEEeeccCCCCeEEEEEEEcCCCeEEEEEEecccc---CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCEEEEEe
Confidence            5788899999999999999654 57888999886421   1113456889999999999999999999999999999999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      ||+++|+|.+++
T Consensus        79 ey~~~~~L~~~l   90 (308)
T cd06615          79 EHMDGGSLDQVL   90 (308)
T ss_pred             eccCCCcHHHHH
Confidence            999999999886

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=99.03  E-value=6.7e-10  Score=116.17  Aligned_cols=85  Identities=22%  Similarity=0.280  Sum_probs=71.3

Q ss_pred             ccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEcccCC
Q 041300          630 YCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLER  708 (716)
Q Consensus       630 ~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~  708 (716)
                      ++||+|+||.||++.. .+++.||||++.+...... .....+.+|++++++++||||+++++++...+..++||||+++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~-~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~Ey~~~   79 (328)
T cd05593           1 KLLGKGTFGKVILVREKASGKYYAMKILKKEVIIAK-DEVAHTLTESRVLKNTRHPFLTSLKYSFQTKDRLCFVMEYVNG   79 (328)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhh-hHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCEEEEEEeCCCC
Confidence            3689999999999964 4689999999975322111 1345788999999999999999999999999999999999999


Q ss_pred             CCHHhHh
Q 041300          709 GSLAAIL  715 (716)
Q Consensus       709 GsL~~~l  715 (716)
                      |+|.+++
T Consensus        80 g~L~~~l   86 (328)
T cd05593          80 GELFFHL   86 (328)
T ss_pred             CCHHHHH
Confidence            9998775

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=99.03  E-value=4.4e-10  Score=119.50  Aligned_cols=97  Identities=18%  Similarity=0.298  Sum_probs=79.7

Q ss_pred             HHHHhhcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC
Q 041300          618 EIVRETNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA  696 (716)
Q Consensus       618 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~  696 (716)
                      ++.....+|...+.||+|+||.||++... +++.||+|++.+...... ...+.+.+|+++++.++||||+++++++.++
T Consensus        37 ~~~~~~~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~~~-~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~  115 (371)
T cd05622          37 DLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKR-SDSAFFWEERDIMAFANSPWVVQLFYAFQDD  115 (371)
T ss_pred             hcCcchhhcEEEEEEeecCCeEEEEEEECCCCcEEEEEEEEHHHhhhh-HHHHHHHHHHHHHHhCCCCCCCeEEEEEEcC
Confidence            34445578999999999999999999754 578999999864221111 1335588999999999999999999999999


Q ss_pred             CeeeEEEcccCCCCHHhHh
Q 041300          697 QHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       697 ~~~~lv~Ey~~~GsL~~~l  715 (716)
                      +..++|||||++|+|.+++
T Consensus       116 ~~~~lv~Ey~~gg~L~~~~  134 (371)
T cd05622         116 RYLYMVMEYMPGGDLVNLM  134 (371)
T ss_pred             CEEEEEEcCCCCCcHHHHH
Confidence            9999999999999999876

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=99.03  E-value=5.3e-10  Score=117.20  Aligned_cols=90  Identities=24%  Similarity=0.328  Sum_probs=76.1

Q ss_pred             CCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          625 DFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      +|...+.||+|+||+||++.. .+++.||||++........ ...+.+..|++++..++|+||+++++++.+.+..++||
T Consensus         2 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~-~~~~~~~~e~~i~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (330)
T cd05601           2 DFDVKSLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQ-ETVSFFEEERDILSISNSPWIPQLQYAFQDKDNLYLVM   80 (330)
T ss_pred             CceEEEEEEeccCEEEEEEEECCCCCEEEEEEEEHHHhhhh-hHHHHHHHHHHHHHhCCCCCCcceeeEEecCCeEEEEE
Confidence            578889999999999999964 4688999999975322111 13456889999999999999999999999999999999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      ||+++|+|.+++
T Consensus        81 e~~~~~~L~~~l   92 (330)
T cd05601          81 EYQPGGDLLSLL   92 (330)
T ss_pred             CCCCCCCHHHHH
Confidence            999999999876

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=99.02  E-value=3.5e-10  Score=114.19  Aligned_cols=91  Identities=31%  Similarity=0.555  Sum_probs=78.9

Q ss_pred             hhcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300          622 ETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL  701 (716)
Q Consensus       622 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l  701 (716)
                      +..+|...++||+|+||.||+|...++..||+|.+....   . ....++.+|+.++++++|+|++++++++...+..++
T Consensus         4 ~~~~y~~~~~ig~g~~~~vy~~~~~~~~~~~~k~~~~~~---~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~l   79 (261)
T cd05148           4 PREEFTLERKLGSGYFGEVWEGLWKNRVRVAIKILKSDD---L-LKQQDFQKEVQALKRLRHKHLISLFAVCSVGEPVYI   79 (261)
T ss_pred             cHHHHHHhhhhccCCCccEEEeEecCCCcEEEEeccccc---h-hhHHHHHHHHHHHhcCCCcchhheeeeEecCCCeEE
Confidence            345688889999999999999988778999999987532   1 134679999999999999999999999999999999


Q ss_pred             EEcccCCCCHHhHhC
Q 041300          702 VYEFLERGSLAAILS  716 (716)
Q Consensus       702 v~Ey~~~GsL~~~l~  716 (716)
                      ||||+++|+|.++++
T Consensus        80 v~e~~~~~~L~~~~~   94 (261)
T cd05148          80 ITELMEKGSLLAFLR   94 (261)
T ss_pred             EEeecccCCHHHHHh
Confidence            999999999998863

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=99.02  E-value=5.9e-10  Score=112.57  Aligned_cols=87  Identities=22%  Similarity=0.465  Sum_probs=76.6

Q ss_pred             cCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      ++|...+.||+|+||.||+|...++..||+|.+....     ...+.|.+|+.++++++|+|++++++++...+..++||
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~v~iK~~~~~~-----~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   80 (261)
T cd05072           6 ESIKLVKKLGAGQFGEVWMGYYNNSTKVAVKTLKPGT-----MSVQAFLEEANLMKTLQHDKLVRLYAVVTKEEPIYIIT   80 (261)
T ss_pred             HHeEEeeecCCcCCceEEEEEecCCceEEEEEccCCc-----hhHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCcEEEE
Confidence            4578888999999999999988788889999986521     13467999999999999999999999999999999999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      ||+++|+|.+++
T Consensus        81 e~~~~~~L~~~l   92 (261)
T cd05072          81 EYMAKGSLLDFL   92 (261)
T ss_pred             ecCCCCcHHHHH
Confidence            999999999886

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.02  E-value=1.9e-10  Score=121.22  Aligned_cols=87  Identities=28%  Similarity=0.445  Sum_probs=72.8

Q ss_pred             CcccccccCCCceEEEEEEcC--CCC--EEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300          626 FDAEYCIGNGGHGSVYRAELP--SGE--VVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL  701 (716)
Q Consensus       626 ~~~~~~ig~g~~g~v~~~~~~--~~~--~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l  701 (716)
                      ....+.||+|.||.|++|.|.  .|.  .||||++.......   ...+|.+|+.+|.+++|||++||||+..+ ...+|
T Consensus       112 i~l~e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~---~mddflrEas~M~~L~H~hliRLyGvVl~-qp~mM  187 (1039)
T KOG0199|consen  112 IKLYELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNA---IMDDFLREASHMLKLQHPHLIRLYGVVLD-QPAMM  187 (1039)
T ss_pred             HHHHHHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccch---hHHHHHHHHHHHHhccCcceeEEeeeecc-chhhH
Confidence            344567999999999999875  343  68999998643221   45789999999999999999999999987 66789


Q ss_pred             EEcccCCCCHHhHhC
Q 041300          702 VYEFLERGSLAAILS  716 (716)
Q Consensus       702 v~Ey~~~GsL~~~l~  716 (716)
                      |+|.++.|+|.+.||
T Consensus       188 V~ELaplGSLldrLr  202 (1039)
T KOG0199|consen  188 VFELAPLGSLLDRLR  202 (1039)
T ss_pred             HhhhcccchHHHHHh
Confidence            999999999999875

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=99.02  E-value=7.6e-10  Score=112.35  Aligned_cols=82  Identities=34%  Similarity=0.527  Sum_probs=69.0

Q ss_pred             cccCCCceEEEEEEcCC---CCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEcccC
Q 041300          631 CIGNGGHGSVYRAELPS---GEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLE  707 (716)
Q Consensus       631 ~ig~g~~g~v~~~~~~~---~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~  707 (716)
                      .||+|+||.||+|...+   +..+|+|.++....   ......|.+|+.++++++|||+++++|++.+....++|||||+
T Consensus         2 ~lg~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~   78 (269)
T cd05087           2 EIGNGWFGKVILGEVNSGYTPAQVVVKELRVSAS---VQEQMKFLEEAQPYRSLQHSNLLQCLGQCTEVTPYLLVMEFCP   78 (269)
T ss_pred             cccccCCceEEEEEEcCCCCceEEEEEecCCCCC---hHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCCcEEEEECCC
Confidence            58999999999997543   35789998865321   1134578999999999999999999999998889999999999


Q ss_pred             CCCHHhHh
Q 041300          708 RGSLAAIL  715 (716)
Q Consensus       708 ~GsL~~~l  715 (716)
                      +|+|.+++
T Consensus        79 ~g~L~~~l   86 (269)
T cd05087          79 LGDLKGYL   86 (269)
T ss_pred             CCcHHHHH
Confidence            99999886

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=99.02  E-value=6.5e-10  Score=112.27  Aligned_cols=88  Identities=27%  Similarity=0.513  Sum_probs=77.3

Q ss_pred             hcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      .++|...+.||+|+||.||+|...++..||||.++....     ..++|.+|++++++++|||++++++++...+..++|
T Consensus         5 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~v~iK~~~~~~~-----~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   79 (261)
T cd05068           5 RTSIQLLRKLGAGQFGEVWEGLWNNTTPVAVKTLKPGTM-----DPKDFLAEAQIMKKLRHPKLIQLYAVCTLEEPIYIV   79 (261)
T ss_pred             hhheeeEEEecccCCccEEEEEecCCeEEEEEeeCCCcc-----cHHHHHHHHHHHHHCCCCCccceeEEEecCCCeeee
Confidence            346888899999999999999877778899999875321     346799999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      |||+++|+|.+++
T Consensus        80 ~e~~~~~~L~~~~   92 (261)
T cd05068          80 TELMKYGSLLEYL   92 (261)
T ss_pred             eecccCCcHHHHH
Confidence            9999999999886

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=99.01  E-value=1.1e-09  Score=110.97  Aligned_cols=91  Identities=27%  Similarity=0.439  Sum_probs=77.8

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ++|...+.||+|+||.||+|... +++.||+|.++........ ..+.+.+|++++++++|+|++++++++...+..++|
T Consensus         2 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~-~~~~~~~ei~~l~~~~~~~i~~~~~~~~~~~~~~lv   80 (267)
T cd08224           2 GNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAK-ARQDCLKEIDLLKQLDHPNVIKYLASFIENNELNIV   80 (267)
T ss_pred             CceeeeeeeccCCceEEEEEEEcCCCCEEEEEEeecccccchh-hHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEE
Confidence            46888899999999999999765 7899999998753322221 356799999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      |||+++|+|.+++
T Consensus        81 ~e~~~~~~L~~~l   93 (267)
T cd08224          81 LELADAGDLSRMI   93 (267)
T ss_pred             EecCCCCCHHHHH
Confidence            9999999998775

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=99.01  E-value=1e-09  Score=111.08  Aligned_cols=91  Identities=26%  Similarity=0.484  Sum_probs=75.9

Q ss_pred             CCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCcc--chhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          625 DFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCD--QIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~--~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      +|...+.||+|+||+||+|...+++.+|||.+.......  .......+.+|++++++++|+|++++++++.+.+..++|
T Consensus         1 ~~~~~~~ig~g~~~~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv   80 (265)
T cd06631           1 EWTKGEVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQYLGTCLDDNTISIF   80 (265)
T ss_pred             CccccceEeccCCeEEEEEEEcCCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCEeeEeeEeecCCeEEEE
Confidence            356778899999999999987788999999986432111  111234688999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      |||+++|+|.+++
T Consensus        81 ~e~~~~~~L~~~l   93 (265)
T cd06631          81 MEFVPGGSISSIL   93 (265)
T ss_pred             EecCCCCcHHHHH
Confidence            9999999999886

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=99.01  E-value=6.3e-10  Score=112.04  Aligned_cols=86  Identities=24%  Similarity=0.482  Sum_probs=74.9

Q ss_pred             CCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEc
Q 041300          625 DFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYE  704 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~E  704 (716)
                      +|...+.||+|+||.||.|.+.++..||||.+.....     ...+|.+|+.++.+++||||+++++++...+..++|||
T Consensus         5 ~~~~~~~lg~G~~~~vy~~~~~~~~~~aik~~~~~~~-----~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   79 (256)
T cd05113           5 DLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM-----SEDEFIEEAKVMMKLSHEKLVQLYGVCTKQRPIYIVTE   79 (256)
T ss_pred             HeEEeeEecCcccceEEEEEecCCCcEEEEEcCCCcc-----cHHHHHHHHHHHhcCCCCCeeeEEEEEccCCCcEEEEE
Confidence            4677788999999999999887777799999875321     23579999999999999999999999998888999999


Q ss_pred             ccCCCCHHhHh
Q 041300          705 FLERGSLAAIL  715 (716)
Q Consensus       705 y~~~GsL~~~l  715 (716)
                      |+++|+|.+++
T Consensus        80 ~~~~~~l~~~i   90 (256)
T cd05113          80 YMSNGCLLNYL   90 (256)
T ss_pred             cCCCCcHHHHH
Confidence            99999999876

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=99.01  E-value=1.3e-09  Score=110.52  Aligned_cols=91  Identities=25%  Similarity=0.414  Sum_probs=76.7

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ++|...++||+|+||.||+|... +++.||||.+........ .....|.+|++++++++|||++++++++.+.+..++|
T Consensus         2 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v   80 (267)
T cd08228           2 ANFQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDA-KARQDCVKEIDLLKQLNHPNVIKYLDSFIEDNELNIV   80 (267)
T ss_pred             cceeeeeeeccCCCeeEEEEEEeCCCCEEEEEEeeccccCCH-HHHHHHHHHHHHHHhCCCcceeeeeeeEEECCeEEEE
Confidence            46888899999999999999754 688999998865322222 2345789999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      +||+++|+|.+++
T Consensus        81 ~e~~~~~~L~~~~   93 (267)
T cd08228          81 LELADAGDLSQMI   93 (267)
T ss_pred             EEecCCCcHHHHH
Confidence            9999999998765

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=99.01  E-value=5.1e-10  Score=118.41  Aligned_cols=90  Identities=28%  Similarity=0.414  Sum_probs=76.5

Q ss_pred             CCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          625 DFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      +|...+.||+|+||+||+|... +++.||||++........ .....+.+|++++..++||||+++++++.+++..++||
T Consensus         2 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~-~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (350)
T cd05573           2 DFEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKR-NQIAHVRAERDILADADSPWIVKLYYSFQDEEHLYLVM   80 (350)
T ss_pred             CceEEEEEEeCCcEEEEEEEECCCCCEEEEEEEEHHHHhhc-cHHHHHHHHHHHHHhcCCCCccchhhheecCCeEEEEE
Confidence            5778889999999999999754 688999999875322111 13457899999999999999999999999999999999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      ||+++|+|.+++
T Consensus        81 e~~~~~~L~~~l   92 (350)
T cd05573          81 EYMPGGDLMNLL   92 (350)
T ss_pred             cCCCCCCHHHHH
Confidence            999999999876

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=99.01  E-value=5.9e-10  Score=114.42  Aligned_cols=91  Identities=25%  Similarity=0.450  Sum_probs=75.5

Q ss_pred             hhcCCcccccccCCCceEEEEEEcC------CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEe
Q 041300          622 ETNDFDAEYCIGNGGHGSVYRAELP------SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSH  695 (716)
Q Consensus       622 ~~~~~~~~~~ig~g~~g~v~~~~~~------~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~  695 (716)
                      ...+|...++||+|+||.||+|...      .+..||||.+....   .......|.+|++++++++|||++++++++.+
T Consensus         4 ~~~~~~i~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~   80 (288)
T cd05061           4 SREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESA---SLRERIEFLNEASVMKGFTCHHVVRLLGVVSK   80 (288)
T ss_pred             cHHHceeeeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcC---CHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcC
Confidence            3456888899999999999999643      24579999886432   11134568899999999999999999999999


Q ss_pred             CCeeeEEEcccCCCCHHhHh
Q 041300          696 AQHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       696 ~~~~~lv~Ey~~~GsL~~~l  715 (716)
                      ++..++||||+++|+|.+++
T Consensus        81 ~~~~~lv~e~~~~g~L~~~l  100 (288)
T cd05061          81 GQPTLVVMELMAHGDLKSYL  100 (288)
T ss_pred             CCCcEEEEeCCCCCCHHHHH
Confidence            99999999999999999987

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=99.01  E-value=1.1e-09  Score=109.69  Aligned_cols=82  Identities=33%  Similarity=0.615  Sum_probs=71.6

Q ss_pred             cccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEcccCCCC
Q 041300          631 CIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGS  710 (716)
Q Consensus       631 ~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~Gs  710 (716)
                      +||+|+||.||+|..+++..||+|.+.....  . .....|.+|++++++++|||+++++++|...+..++||||+++|+
T Consensus         2 ~ig~g~~g~vy~~~~~~~~~~a~K~~~~~~~--~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   78 (250)
T cd05085           2 LLGKGNFGEVFKGTLKDKTPVAVKTCKEDLP--Q-ELKIKFLSEARILKQYDHPNIVKLIGVCTQRQPIYIVMELVPGGD   78 (250)
T ss_pred             ccCCCCCceEEEEEecCCcEEEEEecCCcCC--H-HHHHHHHHHHHHHHhCCCCCcCeEEEEEecCCccEEEEECCCCCc
Confidence            6899999999999887888999999875321  1 134568999999999999999999999999999999999999999


Q ss_pred             HHhHh
Q 041300          711 LAAIL  715 (716)
Q Consensus       711 L~~~l  715 (716)
                      |.+++
T Consensus        79 L~~~~   83 (250)
T cd05085          79 FLSFL   83 (250)
T ss_pred             HHHHH
Confidence            99876

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=99.01  E-value=5.9e-10  Score=116.85  Aligned_cols=90  Identities=23%  Similarity=0.311  Sum_probs=75.2

Q ss_pred             CCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          625 DFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      +|...++||+|+||.||++... .++.||+|++.+...... .....|..|+.++..++|++|+++++++.+++..|+||
T Consensus         2 ~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~-~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (332)
T cd05623           2 DFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKR-AETACFREERDVLVNGDNQWITTLHYAFQDENNLYLVM   80 (332)
T ss_pred             CceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEeHHHHHHh-hHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCEEEEEE
Confidence            5778899999999999999765 477899999864221111 12345889999999999999999999999999999999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      ||+++|+|.+++
T Consensus        81 ey~~~g~L~~~l   92 (332)
T cd05623          81 DYYVGGDLLTLL   92 (332)
T ss_pred             eccCCCcHHHHH
Confidence            999999999887

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=99.01  E-value=8.5e-10  Score=115.47  Aligned_cols=85  Identities=24%  Similarity=0.310  Sum_probs=70.6

Q ss_pred             ccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeCCeeeEEEcccC
Q 041300          630 YCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHSFLVYEFLE  707 (716)
Q Consensus       630 ~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~~~~~lv~Ey~~  707 (716)
                      ++||+|+||.||++... ++..||||++++...... .....+.+|+.++.++ +|||||++++++.+.+..|+|||||+
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~i~~~~~~~~-~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~~~~~~lv~e~~~   79 (329)
T cd05588           1 RVIGRGSYAKVLLVELKKTRRIYAMKVIKKELVNDD-EDIDWVQTEKHVFETASNHPFLVGLHSCFQTESRLFFVIEFVS   79 (329)
T ss_pred             CeEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhh-hHHHHHHHHHHHHHhccCCCCCCceEEEEEcCCEEEEEEeCCC
Confidence            36899999999999654 588999999976332222 1345688999999988 79999999999999999999999999


Q ss_pred             CCCHHhHh
Q 041300          708 RGSLAAIL  715 (716)
Q Consensus       708 ~GsL~~~l  715 (716)
                      +|+|.+++
T Consensus        80 ~g~L~~~~   87 (329)
T cd05588          80 GGDLMFHM   87 (329)
T ss_pred             CCCHHHHH
Confidence            99998775

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=99.01  E-value=4.8e-10  Score=118.09  Aligned_cols=90  Identities=24%  Similarity=0.469  Sum_probs=73.2

Q ss_pred             cCCcccccccCCCceEEEEEEc------CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeC
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL------PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHA  696 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~------~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~  696 (716)
                      +.|...+.||+|+||.||+|..      .+++.||||+++....   ......+.+|++++.++ +|||||+++++|...
T Consensus         7 ~~~~~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~   83 (343)
T cd05103           7 DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGAT---HSEHRALMSELKILIHIGHHLNVVNLLGACTKP   83 (343)
T ss_pred             hHhcccccccCCccceEEEEeeccCCccccceeEEEEEeccCCC---hHHHHHHHHHHHHHHhccCCccHhhhcceeecC
Confidence            4688899999999999999963      3467899999975321   11345688999999999 789999999988654


Q ss_pred             -CeeeEEEcccCCCCHHhHhC
Q 041300          697 -QHSFLVYEFLERGSLAAILS  716 (716)
Q Consensus       697 -~~~~lv~Ey~~~GsL~~~l~  716 (716)
                       ...++|||||++|+|.++++
T Consensus        84 ~~~~~lv~ey~~~g~L~~~i~  104 (343)
T cd05103          84 GGPLMVIVEFCKFGNLSNYLR  104 (343)
T ss_pred             CCceEEEEeccCCCcHHHHHH
Confidence             45789999999999998873

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.00  E-value=6.8e-10  Score=113.01  Aligned_cols=81  Identities=22%  Similarity=0.401  Sum_probs=67.2

Q ss_pred             cccCCCceEEEEEEcCC-------------------------CCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCC
Q 041300          631 CIGNGGHGSVYRAELPS-------------------------GEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRN  685 (716)
Q Consensus       631 ~ig~g~~g~v~~~~~~~-------------------------~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~n  685 (716)
                      .||+|+||.||+|.+..                         ...||+|++....    .....+|..|+++++.++|||
T Consensus         2 ~lG~G~~~~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~----~~~~~~~~~~~~~~~~l~h~n   77 (274)
T cd05076           2 HLGQGTRTNIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPSH----RDIALAFFETASLMSQVSHIH   77 (274)
T ss_pred             CcCcccccceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChHH----HHHHHHHHHHHHHHhcCCCCC
Confidence            58999999999996421                         1358899886521    113457889999999999999


Q ss_pred             ccccceEEEeCCeeeEEEcccCCCCHHhHh
Q 041300          686 IVKFYGFCSHAQHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       686 iv~l~g~~~~~~~~~lv~Ey~~~GsL~~~l  715 (716)
                      ||+++|+|.+++..++||||+++|+|.+++
T Consensus        78 iv~~~~~~~~~~~~~lv~ey~~~g~L~~~l  107 (274)
T cd05076          78 LAFVHGVCVRGSENIMVEEFVEHGPLDVCL  107 (274)
T ss_pred             eeeEEEEEEeCCceEEEEecCCCCcHHHHH
Confidence            999999999999999999999999998876

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=99.00  E-value=6.3e-10  Score=113.49  Aligned_cols=91  Identities=24%  Similarity=0.475  Sum_probs=76.0

Q ss_pred             hhcCCcccccccCCCceEEEEEEcC------CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEe
Q 041300          622 ETNDFDAEYCIGNGGHGSVYRAELP------SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSH  695 (716)
Q Consensus       622 ~~~~~~~~~~ig~g~~g~v~~~~~~------~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~  695 (716)
                      ..++|...+.||+|+||.||+|...      .+..||||++....   ......+|.+|+.++++++||||+++++++..
T Consensus         4 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~---~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~   80 (277)
T cd05062           4 AREKITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAA---SMRERIEFLNEASVMKEFNCHHVVRLLGVVSQ   80 (277)
T ss_pred             cHHHceeeeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccC---CHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcC
Confidence            3467888999999999999998642      24679999986422   11234679999999999999999999999998


Q ss_pred             CCeeeEEEcccCCCCHHhHh
Q 041300          696 AQHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       696 ~~~~~lv~Ey~~~GsL~~~l  715 (716)
                      ++..++||||+++|+|.+++
T Consensus        81 ~~~~~lv~e~~~~~~L~~~~  100 (277)
T cd05062          81 GQPTLVIMELMTRGDLKSYL  100 (277)
T ss_pred             CCCeEEEEecCCCCCHHHHH
Confidence            89999999999999999876

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=99.00  E-value=8.3e-10  Score=115.02  Aligned_cols=84  Identities=25%  Similarity=0.375  Sum_probs=70.0

Q ss_pred             ccccCCCceEEEEEEc----CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEcc
Q 041300          630 YCIGNGGHGSVYRAEL----PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEF  705 (716)
Q Consensus       630 ~~ig~g~~g~v~~~~~----~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  705 (716)
                      +.||+|+||.||+++.    .+|+.||||++......  ......+.+|++++++++|||||++++++.+++..|+||||
T Consensus         2 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~   79 (318)
T cd05582           2 KVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLK--VRDRVRTKMERDILAEVNHPFIVKLHYAFQTEGKLYLILDF   79 (318)
T ss_pred             ceeeeCCCEEEEEEEEeccCCCCCEEEEEEEEHHHhh--hhhHHHHHHHHHHHHhCCCCCcccEEEEEEcCCEEEEEEcC
Confidence            4699999999999853    35789999999753211  11334578899999999999999999999999999999999


Q ss_pred             cCCCCHHhHh
Q 041300          706 LERGSLAAIL  715 (716)
Q Consensus       706 ~~~GsL~~~l  715 (716)
                      +++|+|.+++
T Consensus        80 ~~~~~L~~~l   89 (318)
T cd05582          80 LRGGDLFTRL   89 (318)
T ss_pred             CCCCcHHHHH
Confidence            9999998876

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=99.00  E-value=1.1e-09  Score=112.01  Aligned_cols=88  Identities=25%  Similarity=0.452  Sum_probs=74.4

Q ss_pred             CCcccccccCCCceEEEEEEc-----CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCee
Q 041300          625 DFDAEYCIGNGGHGSVYRAEL-----PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHS  699 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~-----~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~  699 (716)
                      +|...+.||+|+||+||+|..     ..+..||+|.+....   ......+|.+|++++++++||||+++++++..++..
T Consensus         6 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~   82 (283)
T cd05090           6 AVRFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDIN---NPQQWGEFQQEASLMAELHHPNIVCLLGVVTQEQPV   82 (283)
T ss_pred             hceeeeeccccCCcceEEEEEecCCCCCcceEEEEeccCCC---CHHHHHHHHHHHHHHhhCCCCCeeeEEEEEecCCce
Confidence            567778999999999999963     245789999987522   122346799999999999999999999999999999


Q ss_pred             eEEEcccCCCCHHhHh
Q 041300          700 FLVYEFLERGSLAAIL  715 (716)
Q Consensus       700 ~lv~Ey~~~GsL~~~l  715 (716)
                      ++||||+++|+|.+++
T Consensus        83 ~lv~e~~~~~~L~~~l   98 (283)
T cd05090          83 CMLFEYLNQGDLHEFL   98 (283)
T ss_pred             EEEEEcCCCCcHHHHH
Confidence            9999999999999886

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=98.99  E-value=8.6e-10  Score=116.70  Aligned_cols=87  Identities=25%  Similarity=0.475  Sum_probs=72.9

Q ss_pred             CCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          625 DFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      +|...+.||+|+||.||+|.. .+++.||||++....   .......+.+|++++++++|+|||++++++...+..++||
T Consensus        75 ~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  151 (353)
T PLN00034         75 ELERVNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNH---EDTVRRQICREIEILRDVNHPNVVKCHDMFDHNGEIQVLL  151 (353)
T ss_pred             HHhhhhhccCCCCeEEEEEEECCCCCEEEEEEEecCC---cHHHHHHHHHHHHHHHhCCCCCcceeeeEeccCCeEEEEE
Confidence            355567899999999999975 468999999986532   1123467999999999999999999999999999999999


Q ss_pred             cccCCCCHHhH
Q 041300          704 EFLERGSLAAI  714 (716)
Q Consensus       704 Ey~~~GsL~~~  714 (716)
                      |||++|+|.+.
T Consensus       152 e~~~~~~L~~~  162 (353)
T PLN00034        152 EFMDGGSLEGT  162 (353)
T ss_pred             ecCCCCccccc
Confidence            99999998653

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.99  E-value=3.9e-11  Score=117.05  Aligned_cols=243  Identities=20%  Similarity=0.243  Sum_probs=120.0

Q ss_pred             ccCCCCCceeecccccccCCCC----ccccCCcCCcEEEeeccc---ccccccccccCCCCCceeeCCCCCcccCCCCcc
Q 041300          144 VCQLSSIEELFLYSNHLNGSLP----PFLGNLSNIVRLYINNNS---LSGSILTNIGNLKFLFELDLSFLPLSVGNLTNL  216 (716)
Q Consensus       144 ~~~l~~L~~L~L~~N~l~~~~p----~~~~~l~~L~~L~L~~n~---l~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~L  216 (716)
                      ...+..++.|+|++|.+.....    ..+.+.++|+.-++++-.   +...+|..+..           +...+...++|
T Consensus        26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~-----------l~~aL~~~~~L   94 (382)
T KOG1909|consen   26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKM-----------LSKALLGCPKL   94 (382)
T ss_pred             hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHH-----------HHHHHhcCCce
Confidence            3455667777777777653322    233444555555544321   11111211111           11234456688


Q ss_pred             CEEEeeCCcCcccCCCcccc-----ccccEEEccCCcCccccCcc-------------ccCCCCccEEEecCCcccccC-
Q 041300          217 KSLGLMDNHLSGSIPPSFGN-----SMLTWLTLSGNHFTGYLPHN-------------ICRGGLLEAFIVSENHFQGTI-  277 (716)
Q Consensus       217 ~~L~l~~n~l~~~~~~~~~~-----~~L~~L~L~~n~l~~~~~~~-------------~~~~~~L~~L~l~~n~l~~~~-  277 (716)
                      ++|+|++|.+....+..|..     ..|++|.|.+|.+.-..-..             ....+.|+++...+|++.... 
T Consensus        95 ~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga  174 (382)
T KOG1909|consen   95 QKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGA  174 (382)
T ss_pred             eEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccH
Confidence            99999999887655555432     36888888888765221111             222345555555555554321 


Q ss_pred             ---CcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCccc----Cc
Q 041300          278 ---PESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGG----IP  350 (716)
Q Consensus       278 ---p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~  350 (716)
                         ...|...+.|+.+.+..|.|...-..                    .....|..+++|+.|||..|-++..    +.
T Consensus       175 ~~~A~~~~~~~~leevr~~qN~I~~eG~~--------------------al~eal~~~~~LevLdl~DNtft~egs~~La  234 (382)
T KOG1909|consen  175 TALAEAFQSHPTLEEVRLSQNGIRPEGVT--------------------ALAEALEHCPHLEVLDLRDNTFTLEGSVALA  234 (382)
T ss_pred             HHHHHHHHhccccceEEEecccccCchhH--------------------HHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence               12233334444455444444321110                    1112334455555555555554421    22


Q ss_pred             ccccCCCCCCEEEccCCccccccCccc-----CCCCCCcEEEccCCcccc----cCCcccCCCCCCCEEEccCCcC
Q 041300          351 REIGNMSQLQALDLSLNHIVGEIPKEL-----GKLNSLTKLILRGNQLTG----RLPTEIGSLIELEYLDFSANKF  417 (716)
Q Consensus       351 ~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l  417 (716)
                      ..+..+++|+.|++++|.+......+|     ...|+|+.|.|.+|.++.    .+..++...+.|..|+|++|.+
T Consensus       235 kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  235 KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            234445556666666665553322221     124566666666666652    1122334466677777777777

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=98.99  E-value=9.8e-10  Score=110.95  Aligned_cols=88  Identities=28%  Similarity=0.551  Sum_probs=77.3

Q ss_pred             hcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      .++|...++||+|+||.||+|...++..||||.+.....     ..+++.+|++++++++|+|++++++++......++|
T Consensus         5 ~~~~~i~~~ig~g~~~~v~~~~~~~~~~~~vK~~~~~~~-----~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v   79 (261)
T cd05034           5 RESLKLERKLGAGQFGEVWMGTWNGTTKVAVKTLKPGTM-----SPEAFLQEAQIMKKLRHDKLVQLYAVCSEEEPIYIV   79 (261)
T ss_pred             hhheeeeeeeccCcceEEEEEEEcCCceEEEEEecCCcc-----CHHHHHHHHHHHhhCCCCCEeeeeeeeecCCceEEE
Confidence            356888899999999999999877778899999875321     346799999999999999999999999988899999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      |||+++|+|.+++
T Consensus        80 ~e~~~~~~L~~~i   92 (261)
T cd05034          80 TEYMSKGSLLDFL   92 (261)
T ss_pred             EeccCCCCHHHHH
Confidence            9999999999876

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=98.99  E-value=8.5e-10  Score=112.69  Aligned_cols=89  Identities=34%  Similarity=0.631  Sum_probs=75.4

Q ss_pred             cCCcccccccCCCceEEEEEEcC------CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP------SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ  697 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~------~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~  697 (716)
                      .+|...+.||+|+||.||+|...      ++..||||.+.....   ....+.|.+|++++.+++|+|++++++++...+
T Consensus         5 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~   81 (280)
T cd05049           5 DTIVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETAS---NDARKDFEREAELLTNFQHENIVKFYGVCTEGD   81 (280)
T ss_pred             HHhhHHhhccccCCceEeeeeeccccCcCCcceEEEEeecccCC---HHHHHHHHHHHHHHHhcCCCCchheeeEEecCC
Confidence            35777889999999999999653      247899999875321   113468999999999999999999999999999


Q ss_pred             eeeEEEcccCCCCHHhHh
Q 041300          698 HSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       698 ~~~lv~Ey~~~GsL~~~l  715 (716)
                      ..++||||+++|+|.+++
T Consensus        82 ~~~lv~e~~~~~~L~~~i   99 (280)
T cd05049          82 PPIMVFEYMEHGDLNKFL   99 (280)
T ss_pred             CeEEEEecCCCCCHHHHH
Confidence            999999999999999886

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=98.99  E-value=1.1e-09  Score=111.08  Aligned_cols=89  Identities=28%  Similarity=0.507  Sum_probs=74.4

Q ss_pred             cCCcccccccCCCceEEEEEEcC----CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCee
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP----SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHS  699 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~----~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~  699 (716)
                      .+|...+.||+|+||.||+|...    .+..||+|.+.....  . ...+.|.+|+.++.+++||||+++++++..++..
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~--~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   80 (267)
T cd05066           4 SCIKIEKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYT--E-KQRRDFLSEASIMGQFDHPNIIHLEGVVTKSKPV   80 (267)
T ss_pred             HHeEeeeeecccCCCceEEEEEecCCCCceEEEEEECCCCCC--H-HHHHHHHHHHHHHHhCCCCCcceEEEEEecCCcc
Confidence            45778889999999999999653    233789999865321  1 1346799999999999999999999999999999


Q ss_pred             eEEEcccCCCCHHhHh
Q 041300          700 FLVYEFLERGSLAAIL  715 (716)
Q Consensus       700 ~lv~Ey~~~GsL~~~l  715 (716)
                      ++||||+++|+|.+++
T Consensus        81 ~lv~e~~~~~~L~~~~   96 (267)
T cd05066          81 MIVTEYMENGSLDAFL   96 (267)
T ss_pred             EEEEEcCCCCCHHHHH
Confidence            9999999999999886

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=98.99  E-value=1.1e-09  Score=114.36  Aligned_cols=85  Identities=21%  Similarity=0.257  Sum_probs=70.7

Q ss_pred             ccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEcccCC
Q 041300          630 YCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLER  708 (716)
Q Consensus       630 ~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~  708 (716)
                      +.||+|+||.||++.. .++..||+|++........ .....+.+|++++..++||||+++++++...+..++||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~a~K~~~~~~~~~~-~~~~~~~~e~~~l~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~   79 (325)
T cd05594           1 KLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAK-DEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANG   79 (325)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhh-hHHHHHHHHHHHHHhCCCCCCCceEEEEEcCCEEEEEEeCCCC
Confidence            3689999999999964 4688999999975322111 1345678899999999999999999999999999999999999


Q ss_pred             CCHHhHh
Q 041300          709 GSLAAIL  715 (716)
Q Consensus       709 GsL~~~l  715 (716)
                      |+|.+++
T Consensus        80 ~~L~~~l   86 (325)
T cd05594          80 GELFFHL   86 (325)
T ss_pred             CcHHHHH
Confidence            9998775

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=98.98  E-value=1.2e-09  Score=111.69  Aligned_cols=83  Identities=22%  Similarity=0.332  Sum_probs=68.7

Q ss_pred             ccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEcccCCCC
Q 041300          632 IGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGS  710 (716)
Q Consensus       632 ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~Gs  710 (716)
                      ||+|+||+||++.. .+++.||||++........ ...+.+..|++++++++|+|++++.+++..++..++|||||++|+
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~-~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~g~   79 (280)
T cd05608           1 LGKGGFGEVSACQMRATGKLYACKKLNKKRLKKR-KGYEGAMVEKRILAKVHSRFIVSLAYAFQTKTDLCLVMTIMNGGD   79 (280)
T ss_pred             CCCCCceeEEEEEEccCCcEEEEEeeeHHHHhhh-HHHHHHHHHHHHHHhCCCCcEeeeeEEEcCCCeEEEEEeCCCCCC
Confidence            69999999999964 4688999999865322111 123567889999999999999999999999999999999999999


Q ss_pred             HHhHh
Q 041300          711 LAAIL  715 (716)
Q Consensus       711 L~~~l  715 (716)
                      |.+++
T Consensus        80 L~~~~   84 (280)
T cd05608          80 LRYHI   84 (280)
T ss_pred             HHHHH
Confidence            98765

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=98.98  E-value=1.2e-09  Score=110.06  Aligned_cols=86  Identities=24%  Similarity=0.487  Sum_probs=75.0

Q ss_pred             CCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEc
Q 041300          625 DFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYE  704 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~E  704 (716)
                      +|...+.||+|+||.||+|...++..+|+|.+.....     ...+|.+|++++++++|||++++++++...+..++|||
T Consensus         5 ~~~~~~~lg~G~~~~v~~~~~~~~~~~~iK~~~~~~~-----~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e   79 (256)
T cd05059           5 ELTFLKELGSGQFGVVHLGKWRGKIDVAIKMIREGAM-----SEDDFIEEAKVMMKLSHPNLVQLYGVCTKQRPIFIVTE   79 (256)
T ss_pred             HcchhhhhccCCCceEEEeEecCCccEEEEEeccCCC-----CHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCceEEEEe
Confidence            4777889999999999999877777899999864221     23568899999999999999999999999899999999


Q ss_pred             ccCCCCHHhHh
Q 041300          705 FLERGSLAAIL  715 (716)
Q Consensus       705 y~~~GsL~~~l  715 (716)
                      |+++|+|.+++
T Consensus        80 ~~~~~~L~~~l   90 (256)
T cd05059          80 YMANGCLLNYL   90 (256)
T ss_pred             cCCCCCHHHHH
Confidence            99999999886

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=98.98  E-value=1.1e-09  Score=112.32  Aligned_cols=90  Identities=31%  Similarity=0.535  Sum_probs=76.2

Q ss_pred             hcCCcccccccCCCceEEEEEEcC------CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELP------SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA  696 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~------~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~  696 (716)
                      ..+|.....||+|+||.||++..+      ++..||+|++....   .....++|.+|++++++++|||++++++++..+
T Consensus         4 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~---~~~~~~~~~~ei~~l~~l~h~~iv~~~~~~~~~   80 (288)
T cd05050           4 RNNIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEA---SADMQADFQREAALMAEFDHPNIVKLLGVCAVG   80 (288)
T ss_pred             hHhceecccccccccccEEEEEEcccCCCCcceeEEEEecCCCc---CHHHHHHHHHHHHHHHhcCCCchheEEEEEcCC
Confidence            356888889999999999999753      35789999987532   112346799999999999999999999999998


Q ss_pred             CeeeEEEcccCCCCHHhHh
Q 041300          697 QHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       697 ~~~~lv~Ey~~~GsL~~~l  715 (716)
                      +..++||||+++|+|.+++
T Consensus        81 ~~~~lv~e~~~~~~L~~~l   99 (288)
T cd05050          81 KPMCLLFEYMAYGDLNEFL   99 (288)
T ss_pred             CccEEEEecCCCCCHHHHH
Confidence            8999999999999999886

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=98.97  E-value=9.8e-10  Score=111.46  Aligned_cols=82  Identities=33%  Similarity=0.516  Sum_probs=67.0

Q ss_pred             cccCCCceEEEEEEcCCC---CEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEcccC
Q 041300          631 CIGNGGHGSVYRAELPSG---EVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLE  707 (716)
Q Consensus       631 ~ig~g~~g~v~~~~~~~~---~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~  707 (716)
                      .||+|+||.||+|...++   ..+++|.+....   .....+.|.+|+++++.++|||+|+++++|.+....++||||++
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~~~k~~~~~~---~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~lv~e~~~   78 (268)
T cd05086           2 EIGNGWFGKVLLSEIYTDTGVARVVVKELKANA---SSKEQNEFLQQGDPYRILQHPNILQCLGQCVEAIPYLLVFEYCE   78 (268)
T ss_pred             cCCCCcCceEEEEEEEcCCCcceEEEEEecCCC---ChHHHHHHHHHHHHHhccCCcchhheEEEecCCCccEEEEecCC
Confidence            589999999999965433   345677665421   11245689999999999999999999999999999999999999


Q ss_pred             CCCHHhHh
Q 041300          708 RGSLAAIL  715 (716)
Q Consensus       708 ~GsL~~~l  715 (716)
                      +|+|.+++
T Consensus        79 ~~~L~~~l   86 (268)
T cd05086          79 LGDLKSYL   86 (268)
T ss_pred             CCcHHHHH
Confidence            99999886

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.97  E-value=4.1e-10  Score=116.97  Aligned_cols=88  Identities=26%  Similarity=0.487  Sum_probs=75.2

Q ss_pred             cCCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ..|.....||+|+-|.||.+. ..++..||||++.....    ..++-..+|+.+|+..+|+|||+++..|...++.|+|
T Consensus       273 ~~y~~~~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~Q----~~keLilnEi~Vm~~~~H~NiVnfl~Sylv~deLWVV  348 (550)
T KOG0578|consen  273 SKYTDFKKIGQGATGGVYVARKISTKQEVAIKRMDLRKQ----PKKELLLNEILVMRDLHHPNIVNFLDSYLVGDELWVV  348 (550)
T ss_pred             hhhcchhhhccccccceeeeeeccCCceEEEEEEEeccC----CchhhhHHHHHHHHhccchHHHHHHHHhcccceeEEE
Confidence            457777889999999999994 56788999999976321    1334578999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      ||||++|+|.|.+
T Consensus       349 MEym~ggsLTDvV  361 (550)
T KOG0578|consen  349 MEYMEGGSLTDVV  361 (550)
T ss_pred             EeecCCCchhhhh
Confidence            9999999998865

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=98.97  E-value=1.3e-09  Score=111.69  Aligned_cols=89  Identities=33%  Similarity=0.514  Sum_probs=75.1

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      .+|...+.||+|+||+||++.. +++..||+|++.....  . ...+.|.+|+++++.++||||+++++++...+..++|
T Consensus         5 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~--~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv   81 (284)
T cd06620           5 EDLETISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAK--S-SVRKQILRELQIMHECRSPYIVSFYGAFLNENNICMC   81 (284)
T ss_pred             HHHHHHHHcCCCCCeEEEEEEEcCCCcEEEEEEEEecCc--c-hHHHHHHHHHHHHHHcCCCCcceEeeeEecCCEEEEE
Confidence            3566778899999999999965 4588999998864321  1 1346799999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      |||+++|+|.+++
T Consensus        82 ~e~~~~~~L~~~~   94 (284)
T cd06620          82 MEFMDCGSLDRIY   94 (284)
T ss_pred             EecCCCCCHHHHH
Confidence            9999999998775

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.97  E-value=3e-10  Score=114.17  Aligned_cols=89  Identities=25%  Similarity=0.418  Sum_probs=76.1

Q ss_pred             CCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          625 DFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      .|.....||+|+||.||+|. -..++.||+|++......+   ...+.++|+.++..++|+||.++||.+..+...|++|
T Consensus        14 ~~~~~~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~~~d---eIediqqei~~Ls~~~~~~it~yygsyl~g~~LwiiM   90 (467)
T KOG0201|consen   14 LYTKLELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEEAED---EIEDIQQEISVLSQCDSPNITEYYGSYLKGTKLWIIM   90 (467)
T ss_pred             ccccchhccccccceeeeeeeccccceEEEEEechhhcch---hhHHHHHHHHHHHhcCcchHHhhhhheeecccHHHHH
Confidence            46666889999999999995 3457899999998643322   3467889999999999999999999999999999999


Q ss_pred             cccCCCCHHhHhC
Q 041300          704 EFLERGSLAAILS  716 (716)
Q Consensus       704 Ey~~~GsL~~~l~  716 (716)
                      |||.+|++.+.|+
T Consensus        91 ey~~gGsv~~lL~  103 (467)
T KOG0201|consen   91 EYCGGGSVLDLLK  103 (467)
T ss_pred             HHhcCcchhhhhc
Confidence            9999999998763

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=98.97  E-value=1.6e-09  Score=108.67  Aligned_cols=82  Identities=30%  Similarity=0.567  Sum_probs=70.6

Q ss_pred             cccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEcccCCC
Q 041300          631 CIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERG  709 (716)
Q Consensus       631 ~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~G  709 (716)
                      .||+|+||.||+|... +++.||+|.+....   .......|.+|++++++++||||++++++|...+..++||||+++|
T Consensus         2 ~lg~g~~g~vy~~~~~~~~~~~a~k~~~~~~---~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~   78 (252)
T cd05084           2 RIGRGNFGEVFSGRLRADNTPVAVKSCRETL---PPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGG   78 (252)
T ss_pred             ccCcccCccEEEEEEecCCceEEEEecCccC---CHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCCeEEEEeeccCC
Confidence            6899999999999754 68899999876432   1123467999999999999999999999999999999999999999


Q ss_pred             CHHhHh
Q 041300          710 SLAAIL  715 (716)
Q Consensus       710 sL~~~l  715 (716)
                      +|.+++
T Consensus        79 ~L~~~~   84 (252)
T cd05084          79 DFLTFL   84 (252)
T ss_pred             cHHHHH
Confidence            999886

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=98.96  E-value=1.3e-09  Score=110.59  Aligned_cols=82  Identities=35%  Similarity=0.473  Sum_probs=68.2

Q ss_pred             cccCCCceEEEEEEcCC---CCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEcccC
Q 041300          631 CIGNGGHGSVYRAELPS---GEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLE  707 (716)
Q Consensus       631 ~ig~g~~g~v~~~~~~~---~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~  707 (716)
                      .||+|+||+||+|...+   ...+|+|.+....   .......|.+|++.++.++||||+++++++...+..++||||++
T Consensus         2 ~lg~G~fg~v~~~~~~~~~~~~~~~~k~~~~~~---~~~~~~~~~~e~~~~~~l~h~nii~~~~~~~~~~~~~lv~e~~~   78 (269)
T cd05042           2 EIGNGWFGKVLLGEAHRGMSKARVVVKELRASA---TPDEQLLFLQEVQPYRELNHPNVLQCLGQCIESIPYLLVLEFCP   78 (269)
T ss_pred             cCCccCCceEEEEEEecCCCCeEEEEeecCccC---ChHHHHHHHHHHHHHHhCCCCCcceEEEEECCCCceEEEEEeCC
Confidence            58999999999996543   3468888876432   11234678999999999999999999999999999999999999


Q ss_pred             CCCHHhHh
Q 041300          708 RGSLAAIL  715 (716)
Q Consensus       708 ~GsL~~~l  715 (716)
                      +|+|.+++
T Consensus        79 ~g~L~~~l   86 (269)
T cd05042          79 LGDLKNYL   86 (269)
T ss_pred             CCcHHHHH
Confidence            99999886

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=98.96  E-value=1.6e-09  Score=111.23  Aligned_cols=90  Identities=28%  Similarity=0.417  Sum_probs=76.0

Q ss_pred             CCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          625 DFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      +|...+.||+|+||.||++... +++.||+|++......... ....+.+|++++++++||||+++++++..++..++||
T Consensus         2 ~y~~~~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   80 (290)
T cd05580           2 DFEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLK-QVEHVLNEKRILQSIRHPFLVNLYGSFQDDSNLYLVM   80 (290)
T ss_pred             ceEEEEEeecCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhh-HHHHHHHHHHHHHhCCCCCccceeeEEEcCCeEEEEE
Confidence            5778889999999999999754 5889999998653221111 3456889999999999999999999999999999999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      ||+++|+|.+++
T Consensus        81 e~~~~~~L~~~~   92 (290)
T cd05580          81 EYVPGGELFSHL   92 (290)
T ss_pred             ecCCCCCHHHHH
Confidence            999999999886

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=98.96  E-value=1.2e-09  Score=109.66  Aligned_cols=88  Identities=28%  Similarity=0.504  Sum_probs=72.7

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC--eee
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ--HSF  700 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~--~~~  700 (716)
                      .++...+.||+|+||.||.+... +|...|||......  ..  ..+...+|+.+|.+++|||||+++|.....+  ..+
T Consensus        17 ~~~~~~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~--~~--~~~~l~~Ei~iL~~l~~p~IV~~~G~~~~~~~~~~~   92 (313)
T KOG0198|consen   17 SNWSKGKLLGRGSFGSVYLATNKKTGELMAVKSVELED--SP--TSESLEREIRILSRLNHPNIVQYYGSSSSRENDEYN   92 (313)
T ss_pred             chhhhhccccCccceEEEEEEecCCCcceeeeeeeccc--ch--hHHHHHHHHHHHHhCCCCCEEeeCCccccccCeeeE
Confidence            34667788999999999999754 48999999987531  11  1466899999999999999999999865554  589


Q ss_pred             EEEcccCCCCHHhHh
Q 041300          701 LVYEFLERGSLAAIL  715 (716)
Q Consensus       701 lv~Ey~~~GsL~~~l  715 (716)
                      +.|||+++|+|.+++
T Consensus        93 i~mEy~~~GsL~~~~  107 (313)
T KOG0198|consen   93 IFMEYAPGGSLSDLI  107 (313)
T ss_pred             eeeeccCCCcHHHHH
Confidence            999999999999986

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=98.96  E-value=1.8e-09  Score=108.60  Aligned_cols=89  Identities=25%  Similarity=0.399  Sum_probs=76.2

Q ss_pred             CCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          625 DFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      +|...+.||+|+||.||+|... ++..||+|.+......  .....++.+|++++++++|||++++++++.+.+..++||
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   78 (256)
T cd08529           1 DFEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMN--RREREEAIDEARVLAKLDSSYIIRYYESFLDKGKLNIVM   78 (256)
T ss_pred             CceEeEEecCCCCeEEEEEEEcCCCcEEEEEEeehhhCC--HHHHHHHHHHHHHHHhcCCCCeehheeeeccCCEEEEEE
Confidence            4677789999999999999754 6889999998653221  124567999999999999999999999999999999999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      ||+++|+|.+++
T Consensus        79 e~~~~~~L~~~l   90 (256)
T cd08529          79 EYAENGDLHKLL   90 (256)
T ss_pred             EeCCCCcHHHHH
Confidence            999999999886

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=98.96  E-value=2.1e-09  Score=110.02  Aligned_cols=89  Identities=22%  Similarity=0.322  Sum_probs=73.9

Q ss_pred             CcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEc
Q 041300          626 FDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYE  704 (716)
Q Consensus       626 ~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~E  704 (716)
                      |...++||+|+||.||++... +++.||||.+........ .....+.+|+.++++++|++++++++++.+.+..++|||
T Consensus         2 f~~~~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~~~~-~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e   80 (285)
T cd05630           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKR-KGESMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLT   80 (285)
T ss_pred             ceeeEEeecCCCeEEEEEEEcCCCceEEEEEEehhhccch-HHHHHHHHHHHHHHhCCCCCeeeeeEEEecCCEEEEEEE
Confidence            556778999999999999654 688999999875322211 123457889999999999999999999999999999999


Q ss_pred             ccCCCCHHhHh
Q 041300          705 FLERGSLAAIL  715 (716)
Q Consensus       705 y~~~GsL~~~l  715 (716)
                      |+++|+|.+++
T Consensus        81 ~~~g~~L~~~l   91 (285)
T cd05630          81 LMNGGDLKFHI   91 (285)
T ss_pred             ecCCCcHHHHH
Confidence            99999998876

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=98.96  E-value=2.2e-09  Score=108.79  Aligned_cols=88  Identities=28%  Similarity=0.447  Sum_probs=75.5

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      .+|...+.||+|+||.||+|.. .+++.||+|++.....    .....+.+|+.++++++|||++++++++..++..++|
T Consensus         9 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~----~~~~~~~~e~~~l~~~~h~~ii~~~~~~~~~~~~~iv   84 (267)
T cd06646           9 HDYELIQRVGSGTYGDVYKARNLHTGELAAVKIIKLEPG----DDFSLIQQEIFMVKECKHCNIVAYFGSYLSREKLWIC   84 (267)
T ss_pred             hhcchhheeecCCCeEEEEEEECCCCeEEEEEEEecCcc----chHHHHHHHHHHHHhcCCCCeeeeeEEEEeCCEEEEE
Confidence            4688889999999999999975 5688999999864311    1335688999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      |||+++|+|.+++
T Consensus        85 ~e~~~~~~L~~~~   97 (267)
T cd06646          85 MEYCGGGSLQDIY   97 (267)
T ss_pred             EeCCCCCcHHHHH
Confidence            9999999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=98.96  E-value=1.9e-09  Score=112.79  Aligned_cols=85  Identities=21%  Similarity=0.297  Sum_probs=69.7

Q ss_pred             ccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeCCeeeEEEcccC
Q 041300          630 YCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHSFLVYEFLE  707 (716)
Q Consensus       630 ~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~~~~~lv~Ey~~  707 (716)
                      ++||+|+||+||++... +++.||+|++.+...... .....+.+|+.++.++ +|||||++++++...+..++|||||+
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~-~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~   79 (329)
T cd05618           1 RVIGRGSYAKVLLVRLKKTERIYAMKVVKKELVNDD-EDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVN   79 (329)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEhhHhcch-hHHHHHHHHHHHHHhcCCCCcCCceeeEEEeCCEEEEEEeCCC
Confidence            36899999999999754 578999999976422222 1345678899888776 89999999999999999999999999


Q ss_pred             CCCHHhHh
Q 041300          708 RGSLAAIL  715 (716)
Q Consensus       708 ~GsL~~~l  715 (716)
                      +|+|.+++
T Consensus        80 ~~~L~~~~   87 (329)
T cd05618          80 GGDLMFHM   87 (329)
T ss_pred             CCCHHHHH
Confidence            99998765

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=98.96  E-value=1.1e-09  Score=110.91  Aligned_cols=91  Identities=24%  Similarity=0.358  Sum_probs=72.5

Q ss_pred             hhcCCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccch------h----hHHHHHHHHHHHhcCCCCCccccc
Q 041300          622 ETNDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQI------A----DQKEFLTEVQALTEIRHRNIVKFY  690 (716)
Q Consensus       622 ~~~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~------~----~~~~~~~ei~~l~~l~H~niv~l~  690 (716)
                      ..++|.....||+|.||+|..|. .-+++.||||++.+.....+.      .    ..+...+||.+|++++|||||+|+
T Consensus        95 ~lNqy~l~~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~nVV~Li  174 (576)
T KOG0585|consen   95 QLNQYELIKEIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHPNVVKLI  174 (576)
T ss_pred             ehhheehhhhhcCCccceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCcCeeEEE
Confidence            34678899999999999999995 346889999999753321111      0    124688999999999999999999


Q ss_pred             eEEEeC--CeeeEEEcccCCCCHH
Q 041300          691 GFCSHA--QHSFLVYEFLERGSLA  712 (716)
Q Consensus       691 g~~~~~--~~~~lv~Ey~~~GsL~  712 (716)
                      .+..++  +..|||+|||..|.+.
T Consensus       175 EvLDDP~s~~~YlVley~s~G~v~  198 (576)
T KOG0585|consen  175 EVLDDPESDKLYLVLEYCSKGEVK  198 (576)
T ss_pred             EeecCcccCceEEEEEeccCCccc
Confidence            998764  4689999999999864

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=98.96  E-value=9.2e-10  Score=114.73  Aligned_cols=87  Identities=30%  Similarity=0.518  Sum_probs=70.7

Q ss_pred             CcccccccCCCceEEEEEEcCC---C--CEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeee
Q 041300          626 FDAEYCIGNGGHGSVYRAELPS---G--EVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSF  700 (716)
Q Consensus       626 ~~~~~~ig~g~~g~v~~~~~~~---~--~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~  700 (716)
                      ....++||.|.||.||+|.+.+   |  .-||||.-+.....   +..+.|.+|..+|+.++|||||+++|+|.+ ...|
T Consensus       391 Itl~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~---d~tekflqEa~iMrnfdHphIikLIGv~~e-~P~W  466 (974)
T KOG4257|consen  391 ITLKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTP---DDTEKFLQEASIMRNFDHPHIIKLIGVCVE-QPMW  466 (974)
T ss_pred             ccHHHhhcCCcccceeeeEecccccCcceeeeeehhccCCCh---hhHHHHHHHHHHHHhCCCcchhheeeeeec-ccee
Confidence            4556789999999999996532   3  35788987653222   245789999999999999999999999965 5579


Q ss_pred             EEEcccCCCCHHhHhC
Q 041300          701 LVYEFLERGSLAAILS  716 (716)
Q Consensus       701 lv~Ey~~~GsL~~~l~  716 (716)
                      ||||.++-|.|..||.
T Consensus       467 ivmEL~~~GELr~yLq  482 (974)
T KOG4257|consen  467 IVMELAPLGELREYLQ  482 (974)
T ss_pred             EEEecccchhHHHHHH
Confidence            9999999999999873

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.95  E-value=5.9e-10  Score=127.86  Aligned_cols=128  Identities=23%  Similarity=0.287  Sum_probs=82.0

Q ss_pred             CEEEEEcCCCCCccccCCCCCCCCCCCcEEECCCCC--ccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEE
Q 041300           52 RVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNG--FFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVL  129 (716)
Q Consensus        52 ~v~~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  129 (716)
                      .++++.+.++.+.-..   .=...++|+.|-+..|.  +..+.+..|..++.|++|||++|.=-+.+|..++.|-+|++|
T Consensus       524 ~~rr~s~~~~~~~~~~---~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL  600 (889)
T KOG4658|consen  524 SVRRMSLMNNKIEHIA---GSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL  600 (889)
T ss_pred             heeEEEEeccchhhcc---CCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence            4566666666554211   11223357777777665  443444456667777777777766555677777777777777


Q ss_pred             EcccccCccCCCccccCCCCCceeecccccccCCCCccccCCcCCcEEEeeccc
Q 041300          130 SFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNS  183 (716)
Q Consensus       130 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~  183 (716)
                      +|++..+. .+|..+.+++.|.+|++..+.-...+|.....|.+|++|.+....
T Consensus       601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            77777776 567777777777777777766555556666667777777776543

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=98.95  E-value=1.8e-09  Score=108.92  Aligned_cols=86  Identities=22%  Similarity=0.459  Sum_probs=74.2

Q ss_pred             cCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      ++|...++||+|+||.||+|...++..||+|.+.....     ...+|.+|++++++++|+|++++++++ ..+..++||
T Consensus         6 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~a~K~~~~~~~-----~~~~~~~E~~~l~~l~h~~i~~~~~~~-~~~~~~~v~   79 (260)
T cd05067           6 ETLKLVKKLGAGQFGEVWMGYYNGHTKVAIKSLKQGSM-----SPEAFLAEANLMKQLQHPRLVRLYAVV-TQEPIYIIT   79 (260)
T ss_pred             HHceeeeeeccCccceEEeeecCCCceEEEEEecCCCC-----cHHHHHHHHHHHHhcCCcCeeeEEEEE-ccCCcEEEE
Confidence            45778889999999999999988889999999875321     345799999999999999999999987 456789999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      ||+++|+|.+++
T Consensus        80 e~~~~~~L~~~~   91 (260)
T cd05067          80 EYMENGSLVDFL   91 (260)
T ss_pred             EcCCCCCHHHHH
Confidence            999999999875

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=98.95  E-value=1.9e-09  Score=110.47  Aligned_cols=89  Identities=20%  Similarity=0.312  Sum_probs=73.5

Q ss_pred             CcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEc
Q 041300          626 FDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYE  704 (716)
Q Consensus       626 ~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~E  704 (716)
                      |...++||+|+||+||+|.. .+++.||+|.+........ .....+.+|++++++++|++++++.+++..++..++|||
T Consensus         2 ~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~-~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e   80 (285)
T cd05632           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKR-KGESMALNEKQILEKVNSQFVVNLAYAYETKDALCLVLT   80 (285)
T ss_pred             ceEEEEEecCCCeEEEEEEECCCCcEEEEEEeehhhhhhh-hHHHHHHHHHHHHHHcCCcCceeEEEEEecCCEEEEEEE
Confidence            55667899999999999965 4688999999875322111 123457889999999999999999999999999999999


Q ss_pred             ccCCCCHHhHh
Q 041300          705 FLERGSLAAIL  715 (716)
Q Consensus       705 y~~~GsL~~~l  715 (716)
                      |+++|+|.+++
T Consensus        81 ~~~~~~L~~~~   91 (285)
T cd05632          81 IMNGGDLKFHI   91 (285)
T ss_pred             eccCccHHHHH
Confidence            99999998765

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=98.95  E-value=1.6e-09  Score=109.74  Aligned_cols=91  Identities=27%  Similarity=0.448  Sum_probs=76.8

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ++|...+.||+|+||.||++.. .++..||||.+........ ....+|.+|+.+++.++|||++++++++..++..++|
T Consensus         2 ~~y~~~~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~~~~~-~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v   80 (267)
T cd08229           2 ANFRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDA-KARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIV   80 (267)
T ss_pred             chhhhhhhhcccCCeEEEEEeecCCCceEEEEeeeehhhhhH-HHHHHHHHHHHHHHHccCCchhhhhheeEeCCeEEEE
Confidence            3577788999999999999974 4788999998865332222 2346799999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      |||+++|+|.+++
T Consensus        81 ~e~~~~~~L~~~~   93 (267)
T cd08229          81 LELADAGDLSRMI   93 (267)
T ss_pred             EEecCCCCHHHHH
Confidence            9999999998875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=98.95  E-value=1.7e-09  Score=112.97  Aligned_cols=89  Identities=22%  Similarity=0.378  Sum_probs=69.7

Q ss_pred             CcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHH---HhcCCCCCccccceEEEeCCeeeE
Q 041300          626 FDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQA---LTEIRHRNIVKFYGFCSHAQHSFL  701 (716)
Q Consensus       626 ~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~---l~~l~H~niv~l~g~~~~~~~~~l  701 (716)
                      |...+.||+|+||.||+|... +++.||||++++...... ...+.+.+|+++   +++++||||+++++++..++..|+
T Consensus         1 y~i~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~-~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~~~~~~l   79 (324)
T cd05589           1 FRCLAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIAR-DEVESLMCEKRIFETANSERHPFLVNLFACFQTEDHVCF   79 (324)
T ss_pred             CeEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhh-hHHHHHHHHHHHHHhccccCCCChhceeeEEEcCCEEEE
Confidence            455678999999999999654 688999999975321111 123456666654   467789999999999999999999


Q ss_pred             EEcccCCCCHHhHh
Q 041300          702 VYEFLERGSLAAIL  715 (716)
Q Consensus       702 v~Ey~~~GsL~~~l  715 (716)
                      ||||+++|+|..++
T Consensus        80 v~E~~~~~~L~~~~   93 (324)
T cd05589          80 VMEYAAGGDLMMHI   93 (324)
T ss_pred             EEcCCCCCcHHHHh
Confidence            99999999998765

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=98.95  E-value=5e-10  Score=115.41  Aligned_cols=94  Identities=26%  Similarity=0.370  Sum_probs=79.1

Q ss_pred             hhcCCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeCCee
Q 041300          622 ETNDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHS  699 (716)
Q Consensus       622 ~~~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~~~~  699 (716)
                      ...+|.+++.||.|+|.+||+|+ ...++.+|||++.+...-.+. ..+...+|-+.|..+ .||.||+|+--+.++...
T Consensus        71 ~~~DF~Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~K~~Iike~-KvkYV~~Ek~~l~~L~~hPgivkLy~TFQD~~sL  149 (604)
T KOG0592|consen   71 TPNDFKFGKILGEGSYSTVVLAREKATGKEYAIKVLDKRYIIKEK-KVKYVTREKEALTQLSGHPGIVKLYFTFQDEESL  149 (604)
T ss_pred             ChhhcchhheeccccceeEEEeeecCCCceeeHhhhhHHHHHhhc-ccchhhHHHHHHHHhhCCCCeEEEEEEeecccce
Confidence            34679999999999999999995 456889999999874432222 234577888999999 899999999999999999


Q ss_pred             eEEEcccCCCCHHhHhC
Q 041300          700 FLVYEFLERGSLAAILS  716 (716)
Q Consensus       700 ~lv~Ey~~~GsL~~~l~  716 (716)
                      |+|+||++||+|.++|+
T Consensus       150 YFvLe~A~nGdll~~i~  166 (604)
T KOG0592|consen  150 YFVLEYAPNGDLLDLIK  166 (604)
T ss_pred             EEEEEecCCCcHHHHHH
Confidence            99999999999999874

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=98.94  E-value=2.1e-09  Score=108.23  Aligned_cols=87  Identities=28%  Similarity=0.541  Sum_probs=75.8

Q ss_pred             cCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      .+|...+.||+|+||.||++...++..+|+|.+.....     ...+|.+|++++++++||+++++++++......++||
T Consensus         4 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~k~~~~~~~-----~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~   78 (256)
T cd05112           4 SELTLVQEIGSGQFGLVWLGYWLEKRKVAIKTIREGAM-----SEEDFIEEAQVMMKLSHPKLVQLYGVCTERSPICLVF   78 (256)
T ss_pred             hHeEEEeeecCcccceEEEEEEeCCCeEEEEECCCCCC-----CHHHHHHHHHHHHhCCCCCeeeEEEEEccCCceEEEE
Confidence            35777889999999999999877678899999865321     3457999999999999999999999999989999999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      ||+++|+|.+++
T Consensus        79 e~~~~~~L~~~~   90 (256)
T cd05112          79 EFMEHGCLSDYL   90 (256)
T ss_pred             EcCCCCcHHHHH
Confidence            999999999876

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=98.94  E-value=2.8e-09  Score=108.65  Aligned_cols=87  Identities=23%  Similarity=0.397  Sum_probs=74.2

Q ss_pred             CcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEc
Q 041300          626 FDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYE  704 (716)
Q Consensus       626 ~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~E  704 (716)
                      |...+.||+|+||.||+|.. .++..||||++.....   ....+.|.+|++++.+++|||++++++++..++..++|||
T Consensus         6 ~~~~~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~~---~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   82 (277)
T cd06641           6 FTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEA---EDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIME   82 (277)
T ss_pred             hhhheeEeecCCeEEEEEEECCCCcEEEEEEeccccc---hHHHHHHHHHHHHHHhcCCCCEeEEEEEEEeCCeEEEEEE
Confidence            66677899999999999964 4678999998864321   1134678999999999999999999999999999999999


Q ss_pred             ccCCCCHHhHh
Q 041300          705 FLERGSLAAIL  715 (716)
Q Consensus       705 y~~~GsL~~~l  715 (716)
                      |+++|+|.+++
T Consensus        83 ~~~~~~l~~~i   93 (277)
T cd06641          83 YLGGGSALDLL   93 (277)
T ss_pred             eCCCCcHHHHH
Confidence            99999999876

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=98.94  E-value=1.8e-09  Score=109.58  Aligned_cols=88  Identities=30%  Similarity=0.551  Sum_probs=74.2

Q ss_pred             CCcccccccCCCceEEEEEEcCC-C---CEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeee
Q 041300          625 DFDAEYCIGNGGHGSVYRAELPS-G---EVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSF  700 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~~~-~---~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~  700 (716)
                      +|...+.||+|+||.||+|.... +   ..||||++....  .. ...++|..|++++++++|||++++++++.+++..+
T Consensus         5 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~--~~-~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~   81 (269)
T cd05065           5 CVKIEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGY--TE-KQRRDFLSEASIMGQFDHPNIIHLEGVVTKSRPVM   81 (269)
T ss_pred             HeEEEeEecCCCCCeEEEEEEecCCCCceeEEEEEcCCCC--CH-HHHHHHHHHHHHHHhCCCcCcceEEEEECCCCceE
Confidence            46778899999999999997542 3   369999987532  12 24568999999999999999999999999989999


Q ss_pred             EEEcccCCCCHHhHh
Q 041300          701 LVYEFLERGSLAAIL  715 (716)
Q Consensus       701 lv~Ey~~~GsL~~~l  715 (716)
                      +||||+++|+|.+++
T Consensus        82 lv~e~~~~~~L~~~l   96 (269)
T cd05065          82 IITEFMENGALDSFL   96 (269)
T ss_pred             EEEecCCCCcHHHHH
Confidence            999999999999876

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=98.94  E-value=1.6e-09  Score=111.51  Aligned_cols=89  Identities=24%  Similarity=0.508  Sum_probs=73.8

Q ss_pred             cCCcccccccCCCceEEEEEEcCC---------------CCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccc
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELPS---------------GEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVK  688 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~~---------------~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~  688 (716)
                      .+|...+.||+|+||.||++....               ...||||.+.....   ......|.+|++++++++|+|+++
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~ei~~l~~l~h~~i~~   81 (295)
T cd05097           5 QQLRLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVT---KTARNDFLKEIKIMSRLKNPNIIR   81 (295)
T ss_pred             HhCeehhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCC---HHHHHHHHHHHHHHHhCCCCCcCe
Confidence            467888899999999999986421               23589999875321   123467999999999999999999


Q ss_pred             cceEEEeCCeeeEEEcccCCCCHHhHh
Q 041300          689 FYGFCSHAQHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       689 l~g~~~~~~~~~lv~Ey~~~GsL~~~l  715 (716)
                      +++++...+..++||||+++|+|.+++
T Consensus        82 ~~~~~~~~~~~~lv~e~~~~~~L~~~l  108 (295)
T cd05097          82 LLGVCVSDDPLCMITEYMENGDLNQFL  108 (295)
T ss_pred             EEEEEcCCCccEEEEecCCCCcHHHHH
Confidence            999999999999999999999998876

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=98.94  E-value=2.1e-09  Score=109.53  Aligned_cols=83  Identities=24%  Similarity=0.341  Sum_probs=68.2

Q ss_pred             ccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEcccCCCC
Q 041300          632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGS  710 (716)
Q Consensus       632 ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~Gs  710 (716)
                      ||+|+||.||++... +|+.||+|++......... ....+..|++++++++||||+++++++..+...++||||+++|+
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~-~~~~~~~E~~il~~l~hp~i~~~~~~~~~~~~~~lv~e~~~g~~   79 (277)
T cd05607           1 LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKKKS-GEKMALLEKEILEKVNSPFIVNLAYAFESKTHLCLVMSLMNGGD   79 (277)
T ss_pred             CCCCCceEEEEEEEccCCcEEEEEEEcHHHhhcch-hhHHHHHHHHHHHhcCCCcEEEEEEEEecCCeEEEEEecCCCCC
Confidence            699999999999654 5899999998653221111 23456679999999999999999999999999999999999999


Q ss_pred             HHhHh
Q 041300          711 LAAIL  715 (716)
Q Consensus       711 L~~~l  715 (716)
                      |.+++
T Consensus        80 L~~~~   84 (277)
T cd05607          80 LKYHI   84 (277)
T ss_pred             HHHHH
Confidence            98765

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=98.94  E-value=3.2e-09  Score=107.66  Aligned_cols=91  Identities=21%  Similarity=0.365  Sum_probs=75.7

Q ss_pred             CCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccc--hhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300          625 DFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQ--IADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL  701 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~--~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l  701 (716)
                      +|+..+.||+|+||.||+|.. .++..||+|.+........  ....+.+.+|++.+++++|+|+|++++++.+++..++
T Consensus         1 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~   80 (268)
T cd06630           1 EWLKGQQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCEDSHFNL   80 (268)
T ss_pred             CccccceecCcCceEEEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCceehhhceeccCCeEEE
Confidence            367778999999999999964 5688999999875332111  1124678999999999999999999999999999999


Q ss_pred             EEcccCCCCHHhHh
Q 041300          702 VYEFLERGSLAAIL  715 (716)
Q Consensus       702 v~Ey~~~GsL~~~l  715 (716)
                      ||||+++|+|.+++
T Consensus        81 v~e~~~~~~L~~~l   94 (268)
T cd06630          81 FVEWMAGGSVSHLL   94 (268)
T ss_pred             EEeccCCCcHHHHH
Confidence            99999999999876

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=98.94  E-value=2.1e-09  Score=112.12  Aligned_cols=85  Identities=25%  Similarity=0.360  Sum_probs=69.3

Q ss_pred             ccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeCCeeeEEEcccC
Q 041300          630 YCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHSFLVYEFLE  707 (716)
Q Consensus       630 ~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~~~~~lv~Ey~~  707 (716)
                      ++||+|+||+||+|+.. +++.||||++........ ...+.+..|++++..+ +||||+++++++..++..|+||||++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~-~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~~~~~~lv~E~~~   79 (321)
T cd05591           1 KVLGKGSFGKVMLAELKGTDEVYAIKVLKKDVILQD-DDVDCTMTEKRILALAAKHPFLTALHCCFQTKDRLFFVMEYVN   79 (321)
T ss_pred             CccccCCCeEEEEEEECCCCCEEEEEEEeHHHhhhh-hHHHHHHHHHHHHHhccCCCCccceeeEEEcCCeEEEEEeCCC
Confidence            36899999999999754 578999999875322111 1345678899988866 89999999999999999999999999


Q ss_pred             CCCHHhHh
Q 041300          708 RGSLAAIL  715 (716)
Q Consensus       708 ~GsL~~~l  715 (716)
                      +|+|.+++
T Consensus        80 ~~~L~~~l   87 (321)
T cd05591          80 GGDLMFQI   87 (321)
T ss_pred             CCcHHHHH
Confidence            99998765

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=98.93  E-value=3.1e-09  Score=107.04  Aligned_cols=90  Identities=27%  Similarity=0.435  Sum_probs=75.2

Q ss_pred             CcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCcc-chhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          626 FDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCD-QIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       626 ~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~-~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      |...++||+|+||+||+|... ++..||+|.+....... .....+.+.+|++++++++|+|++++++++..++..++||
T Consensus         2 ~~~~~~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~   81 (258)
T cd06632           2 WRKGELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLGTEREEDNLYIFL   81 (258)
T ss_pred             ccccceeeecCCceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCchheeeeEecCCeEEEEE
Confidence            566788999999999999765 68899999986532111 1113467999999999999999999999999999999999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      ||+++++|.+++
T Consensus        82 e~~~~~~L~~~~   93 (258)
T cd06632          82 ELVPGGSLAKLL   93 (258)
T ss_pred             EecCCCcHHHHH
Confidence            999999999876

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=98.93  E-value=2.3e-09  Score=109.94  Aligned_cols=88  Identities=26%  Similarity=0.465  Sum_probs=73.7

Q ss_pred             CCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          625 DFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      +|...+.||+|+||.||+++.. +++.||||++.......  ...+.+.+|++++++++||||+++++++...+..++||
T Consensus         2 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~--~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~   79 (287)
T cd07848           2 KFEVLGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENE--EVKETTLRELKMLRTLKQENIVELKEAFRRRGKLYLVF   79 (287)
T ss_pred             CceEEEEecccCCEEEEEEEECCCCcEEEEEEEecccccc--cchhhHHHHHHHHHhCCCccccchhhhEecCCEEEEEE
Confidence            5778889999999999999764 57889999987542211  13456889999999999999999999999999999999


Q ss_pred             cccCCCCHHhH
Q 041300          704 EFLERGSLAAI  714 (716)
Q Consensus       704 Ey~~~GsL~~~  714 (716)
                      ||+++|.+..+
T Consensus        80 e~~~~~~l~~~   90 (287)
T cd07848          80 EYVEKNMLELL   90 (287)
T ss_pred             ecCCCCHHHHH
Confidence            99999877644

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=98.93  E-value=2e-09  Score=112.95  Aligned_cols=91  Identities=16%  Similarity=0.285  Sum_probs=74.0

Q ss_pred             CCcccccccCCCceEEEEEEc----CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeCCee
Q 041300          625 DFDAEYCIGNGGHGSVYRAEL----PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHS  699 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~----~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~~~~  699 (716)
                      +|...+.||+|+||.||+++.    .++..||+|++.+..........+.+.+|++++.++ +|++|+++++++...+..
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~   80 (332)
T cd05614           1 NFELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQTEAKL   80 (332)
T ss_pred             CceEEEEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEEecCCEE
Confidence            367788999999999999853    357899999986532211111345688999999999 599999999999999999


Q ss_pred             eEEEcccCCCCHHhHh
Q 041300          700 FLVYEFLERGSLAAIL  715 (716)
Q Consensus       700 ~lv~Ey~~~GsL~~~l  715 (716)
                      ++||||+++|+|.+++
T Consensus        81 ~lv~e~~~~g~L~~~l   96 (332)
T cd05614          81 HLILDYVSGGEMFTHL   96 (332)
T ss_pred             EEEEeCCCCCcHHHHH
Confidence            9999999999998876

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=98.93  E-value=2.2e-09  Score=111.70  Aligned_cols=85  Identities=25%  Similarity=0.409  Sum_probs=67.4

Q ss_pred             ccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhc-CCCCCccccceEEEeCCeeeEEEcccC
Q 041300          630 YCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTE-IRHRNIVKFYGFCSHAQHSFLVYEFLE  707 (716)
Q Consensus       630 ~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~-l~H~niv~l~g~~~~~~~~~lv~Ey~~  707 (716)
                      ++||+|+||.||+|... +++.||||+++....... ...+.+..|.+++.. .+||||+++++++..++..|+||||++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~-~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~~~~~~lv~e~~~   79 (316)
T cd05592           1 KVLGKGSFGKVMLAELKGTNEFFAIKALKKDVVLED-DDVECTMVERRVLALAWEHPFLTHLFCTFQTKEHLFFVMEYLN   79 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhh-hhHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCC
Confidence            36899999999999754 578999999975322111 133456677777765 489999999999999999999999999


Q ss_pred             CCCHHhHh
Q 041300          708 RGSLAAIL  715 (716)
Q Consensus       708 ~GsL~~~l  715 (716)
                      +|+|.+++
T Consensus        80 gg~L~~~~   87 (316)
T cd05592          80 GGDLMFHI   87 (316)
T ss_pred             CCcHHHHH
Confidence            99998875

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=98.93  E-value=1.6e-09  Score=109.23  Aligned_cols=90  Identities=22%  Similarity=0.357  Sum_probs=76.5

Q ss_pred             CCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          625 DFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      +|...++||.|+||.||++... ++..||+|.+........ ...+.+.+|++++++++||||+++++++..++..++|+
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   79 (258)
T cd05578           1 HFELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEK-GSVRNVLNERRILQELNHPFLVNLWYSFQDEENMYLVV   79 (258)
T ss_pred             CceEEEEeccCCCceEEEEEEccCCcEEEEEEEehhhhcch-hHHHHHHHHHHHHHhCCCCChHHHHHhhcCCCeEEEEE
Confidence            4677889999999999999765 588999999975332221 14567999999999999999999999999999999999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      ||+++|+|.+++
T Consensus        80 e~~~~~~L~~~l   91 (258)
T cd05578          80 DLLLGGDLRYHL   91 (258)
T ss_pred             eCCCCCCHHHHH
Confidence            999999999876

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=98.93  E-value=1.9e-09  Score=112.36  Aligned_cols=85  Identities=27%  Similarity=0.412  Sum_probs=69.3

Q ss_pred             ccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeCCeeeEEEcccC
Q 041300          630 YCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHSFLVYEFLE  707 (716)
Q Consensus       630 ~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~~~~~lv~Ey~~  707 (716)
                      ++||+|+||+||+|+.. +++.||||++.+...... .....+.+|++++... +||||+++++++...+..|+||||++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~-~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~iv~Ey~~   79 (320)
T cd05590           1 RVLGKGSFGKVMLARLKESGRLYAVKVLKKDVILQD-DDVECTMTEKRILSLARNHPFLTQLYCCFQTPDRLFFVMEFVN   79 (320)
T ss_pred             CeeeeCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhc-cHHHHHHHHHHHHHhccCCCchhceeeEEEcCCEEEEEEcCCC
Confidence            36899999999999754 588999999875321111 1345678888888876 69999999999999999999999999


Q ss_pred             CCCHHhHh
Q 041300          708 RGSLAAIL  715 (716)
Q Consensus       708 ~GsL~~~l  715 (716)
                      +|+|.+++
T Consensus        80 ~g~L~~~i   87 (320)
T cd05590          80 GGDLMFHI   87 (320)
T ss_pred             CchHHHHH
Confidence            99998876

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=98.93  E-value=3e-09  Score=108.86  Aligned_cols=88  Identities=38%  Similarity=0.566  Sum_probs=72.7

Q ss_pred             cCCcccccccCCCceEEEEEEcC-----CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC--
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-----SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA--  696 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-----~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~--  696 (716)
                      ..|...+.||+|+||.||++.++     ++..||||++....    ....+.|.+|++++++++|||+|++++++...  
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~----~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~   79 (284)
T cd05081           4 RHLKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHST----AEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGR   79 (284)
T ss_pred             ccceeeeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCC----HHHHHHHHHHHHHHHhCCCCCeeEEEEEEccCCC
Confidence            35777889999999999999743     47789999986531    12346799999999999999999999988553  


Q ss_pred             CeeeEEEcccCCCCHHhHh
Q 041300          697 QHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       697 ~~~~lv~Ey~~~GsL~~~l  715 (716)
                      ...++||||+++|+|.+++
T Consensus        80 ~~~~lv~e~~~~~~L~~~l   98 (284)
T cd05081          80 RNLRLVMEYLPYGSLRDYL   98 (284)
T ss_pred             CceEEEEEecCCCCHHHHH
Confidence            4578999999999999886

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.93  E-value=1.1e-10  Score=125.66  Aligned_cols=173  Identities=34%  Similarity=0.356  Sum_probs=78.0

Q ss_pred             CCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCC-cccCCCCCCC
Q 041300          330 GKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLP-TEIGSLIELE  408 (716)
Q Consensus       330 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~  408 (716)
                      ..+++|++|++++|.|+...  .+..++.|+.|++++|.|+.  ...+..++.|+.+++++|++...-+ . ...+.+++
T Consensus       115 ~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~  189 (414)
T KOG0531|consen  115 SSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISD--ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLE  189 (414)
T ss_pred             hhhhcchheecccccccccc--chhhccchhhheeccCcchh--ccCCccchhhhcccCCcchhhhhhhhh-hhhccchH
Confidence            33444444444444444321  23334445555555555542  1223334555555555555543322 1 24445555


Q ss_pred             EEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCC--CCEEECCCCcCccccchhccCCCCCCEEECcC
Q 041300          409 YLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQ--LSELDASHNLFGGEIPFQICSLKSLEKLNLSH  486 (716)
Q Consensus       409 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~--L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~  486 (716)
                      .+++.+|.+...  ..+..+..+..+++..|.++..-+  +..+..  |+.+++++|.+. ..+..+..+..+..|++++
T Consensus       190 ~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~  264 (414)
T KOG0531|consen  190 ELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSS  264 (414)
T ss_pred             HHhccCCchhcc--cchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhh
Confidence            555555555422  222223333344555555542211  111112  555666666555 2223444555666666666


Q ss_pred             CcCcccCCcCCcCCCCCCEEEccCCccc
Q 041300          487 NNLSGLIPNCFEGMHGLSIIDISDNQLQ  514 (716)
Q Consensus       487 N~l~~~~~~~~~~~~~L~~l~ls~N~l~  514 (716)
                      |++...  ..+.....+..+...+|++.
T Consensus       265 n~~~~~--~~~~~~~~~~~~~~~~~~~~  290 (414)
T KOG0531|consen  265 NRISNL--EGLERLPKLSELWLNDNKLA  290 (414)
T ss_pred             cccccc--ccccccchHHHhccCcchhc
Confidence            666543  22334444555555555554

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=98.93  E-value=2.5e-09  Score=117.68  Aligned_cols=87  Identities=18%  Similarity=0.217  Sum_probs=72.8

Q ss_pred             CCcccccccCCCceEEEEEEc-CC-CCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          625 DFDAEYCIGNGGHGSVYRAEL-PS-GEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~-~~-~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      .|...+.||+|+||.||++.. .+ +..||+|.+...   .. .....+.+|+++++.++|||||++++++..++..|+|
T Consensus        68 ~y~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~---~~-~~~~~~~~E~~~l~~l~Hpniv~~~~~~~~~~~~~lv  143 (478)
T PTZ00267         68 MYVLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLN---DE-RQAAYARSELHCLAACDHFGIVKHFDDFKSDDKLLLI  143 (478)
T ss_pred             eEEEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccC---CH-HHHHHHHHHHHHHHhCCCCCEeEEEEEEEECCEEEEE
Confidence            378888999999999999953 33 577888876432   11 1345688999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      |||+++|+|.++|
T Consensus       144 ~E~~~gg~L~~~l  156 (478)
T PTZ00267        144 MEYGSGGDLNKQI  156 (478)
T ss_pred             EECCCCCCHHHHH
Confidence            9999999998765

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=98.93  E-value=2.9e-09  Score=111.48  Aligned_cols=85  Identities=22%  Similarity=0.296  Sum_probs=70.9

Q ss_pred             cccccCC--CceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEcc
Q 041300          629 EYCIGNG--GHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEF  705 (716)
Q Consensus       629 ~~~ig~g--~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  705 (716)
                      ..+||+|  +||+||++.. .+|+.||||++.......  ...+.+.+|+++++.++|||||++++++..++..++||||
T Consensus         3 ~~~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~~~--~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~   80 (327)
T cd08227           3 LTVIGRGFEDLMTVNLARYKPTGEYVTVRRINLEACTN--EMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSF   80 (327)
T ss_pred             hhhccccccceEEEEEEeecccCcEEEEEEechhhccH--HHHHHHHHHHHHHHhcCCCCeeeEEEEEEECCEEEEEEec
Confidence            4679999  7889999965 468999999987532211  1335677899999999999999999999999999999999


Q ss_pred             cCCCCHHhHh
Q 041300          706 LERGSLAAIL  715 (716)
Q Consensus       706 ~~~GsL~~~l  715 (716)
                      |++|+|.+++
T Consensus        81 ~~~~~l~~~~   90 (327)
T cd08227          81 MAYGSAKDLI   90 (327)
T ss_pred             cCCCcHHHHH
Confidence            9999999876

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=98.93  E-value=2.2e-09  Score=110.03  Aligned_cols=88  Identities=24%  Similarity=0.454  Sum_probs=75.2

Q ss_pred             CCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          625 DFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      +|...+.||+|+||.||++... .+..||+|.+....  .. .....+.+|++++.+++||||+++++++...+..++||
T Consensus         2 ~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~--~~-~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   78 (286)
T cd06622           2 EIEVLDELGKGNYGSVYKVLHRPTGVTMAMKEIRLEL--DE-SKFNQIIMELDILHKAVSPYIVDFYGAFFIEGAVYMCM   78 (286)
T ss_pred             hhhhhhhhcccCCeEEEEEEEcCCCcEEEEEEeeccc--CH-HHHHHHHHHHHHHHhcCCCcHHhhhhheecCCeEEEEE
Confidence            4677788999999999999765 68899999886421  11 13467999999999999999999999999999999999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      ||+++|+|.+++
T Consensus        79 e~~~~~~l~~~~   90 (286)
T cd06622          79 EYMDAGSLDKLY   90 (286)
T ss_pred             eecCCCCHHHHH
Confidence            999999998875

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=98.92  E-value=3.2e-09  Score=109.09  Aligned_cols=88  Identities=27%  Similarity=0.498  Sum_probs=72.7

Q ss_pred             CCcccccccCCCceEEEEEEcC------CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCe
Q 041300          625 DFDAEYCIGNGGHGSVYRAELP------SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQH  698 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~~------~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~  698 (716)
                      +|...+.||+|+||.||+|...      ....||+|.+....   .....+.+.+|++++++++|||||+++++|...+.
T Consensus         1 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~   77 (290)
T cd05045           1 NLVLGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENA---SSSELRDLLSEFNLLKQVNHPHVIKLYGACSQDGP   77 (290)
T ss_pred             CccccccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCC---CHHHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCC
Confidence            3667788999999999999642      23568899886532   11134679999999999999999999999999999


Q ss_pred             eeEEEcccCCCCHHhHh
Q 041300          699 SFLVYEFLERGSLAAIL  715 (716)
Q Consensus       699 ~~lv~Ey~~~GsL~~~l  715 (716)
                      .++|+||+++|+|.+++
T Consensus        78 ~~lv~e~~~~~~L~~~l   94 (290)
T cd05045          78 LLLIVEYAKYGSLRSFL   94 (290)
T ss_pred             cEEEEEecCCCCHHHHH
Confidence            99999999999999886

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=98.92  E-value=2.4e-09  Score=111.30  Aligned_cols=85  Identities=24%  Similarity=0.397  Sum_probs=68.3

Q ss_pred             ccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeCCeeeEEEcccC
Q 041300          630 YCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHSFLVYEFLE  707 (716)
Q Consensus       630 ~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~~~~~lv~Ey~~  707 (716)
                      +.||+|+||+||+|... +++.||||+++....... .....+..|+.++... +||||+++++++.+.+..++||||++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~-~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~ey~~   79 (316)
T cd05619           1 KMLGKGSFGKVFLAELKGTNQFFAIKALKKDVVLMD-DDVECTMVEKRVLSLAWEHPFLTHLYCTFQTKENLFFVMEYLN   79 (316)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhc-chHHHHHHHHHHHHhccCCCcCcceEEEEEeCCEEEEEEeCCC
Confidence            36899999999999754 578999999975321111 1234567788888764 99999999999999999999999999


Q ss_pred             CCCHHhHh
Q 041300          708 RGSLAAIL  715 (716)
Q Consensus       708 ~GsL~~~l  715 (716)
                      +|+|.+++
T Consensus        80 ~g~L~~~l   87 (316)
T cd05619          80 GGDLMFHI   87 (316)
T ss_pred             CCcHHHHH
Confidence            99998876

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=98.92  E-value=2.8e-09  Score=111.36  Aligned_cols=85  Identities=25%  Similarity=0.364  Sum_probs=67.4

Q ss_pred             ccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHH-HHhcCCCCCccccceEEEeCCeeeEEEcccC
Q 041300          630 YCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQ-ALTEIRHRNIVKFYGFCSHAQHSFLVYEFLE  707 (716)
Q Consensus       630 ~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~-~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~  707 (716)
                      ++||+|+||+||+|... +|+.||||++......... ...++.+|.. +++.++|||||++++++...+..++||||++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~-~~~~~~~e~~~~~~~l~hp~iv~~~~~~~~~~~~~lv~e~~~   79 (323)
T cd05575           1 KVIGKGSFGKVLLAKHKADGKFYAVKVLQKKAILKKK-EQKHIMAERNVLLKNVKHPFLVGLHYSFQTADKLYFVLDYVN   79 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhh-HHHHHHHHHHHHHhhCCCCCCCCeeEEEEeCCEEEEEEcCCC
Confidence            36899999999999754 6899999998753211111 2345566655 4678999999999999999999999999999


Q ss_pred             CCCHHhHh
Q 041300          708 RGSLAAIL  715 (716)
Q Consensus       708 ~GsL~~~l  715 (716)
                      +|+|.+++
T Consensus        80 ~g~L~~~l   87 (323)
T cd05575          80 GGELFFHL   87 (323)
T ss_pred             CCCHHHHH
Confidence            99998775

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=98.92  E-value=3.2e-09  Score=108.93  Aligned_cols=88  Identities=22%  Similarity=0.338  Sum_probs=73.2

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ++|...++||+|+||.||+|... ++..||+|+++......   ....+.+|++++++++||||+++++++..++..++|
T Consensus         5 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~---~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv   81 (288)
T cd07871           5 ETYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEG---APCTAIREVSLLKNLKHANIVTLHDIIHTERCLTLV   81 (288)
T ss_pred             ccceEeeEEecCCCEEEEEEEECCCCCEEEEEEecccccCC---cchhHHHHHHHHHhCCCCCEeeEEEEEcCCCeEEEE
Confidence            45888889999999999999654 68899999986532111   234678999999999999999999999998899999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      |||+++ +|.+++
T Consensus        82 ~e~~~~-~l~~~l   93 (288)
T cd07871          82 FEYLDS-DLKQYL   93 (288)
T ss_pred             EeCCCc-CHHHHH
Confidence            999985 888765

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=98.92  E-value=2.6e-09  Score=107.50  Aligned_cols=86  Identities=29%  Similarity=0.539  Sum_probs=75.7

Q ss_pred             cCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      .+|...+.||+|+||.||+|.. .++.||||.+.....     ..+++.+|+.++++++|+|++++++++.+.+..++||
T Consensus         6 ~~~~~~~~ig~g~~g~v~~~~~-~~~~v~iK~~~~~~~-----~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~   79 (256)
T cd05039           6 KELKLGATIGKGEFGDVMLGDY-RGQKVAVKCLKDDST-----AAQAFLAEASVMTTLRHPNLVQLLGVVLQGNPLYIVT   79 (256)
T ss_pred             hhccceeeeecCCCceEEEEEe-cCcEEEEEEeccchh-----HHHHHHHHHHHHHhcCCcceeeeEEEEcCCCCeEEEE
Confidence            4678889999999999999986 478899999875321     3467999999999999999999999999888999999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      ||+++|+|.+++
T Consensus        80 e~~~~~~L~~~~   91 (256)
T cd05039          80 EYMAKGSLVDYL   91 (256)
T ss_pred             EecCCCcHHHHH
Confidence            999999999876

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=98.92  E-value=2.5e-09  Score=108.01  Aligned_cols=86  Identities=27%  Similarity=0.522  Sum_probs=73.0

Q ss_pred             cCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      ..|...++||+|+||.||+|...+...||+|++.....     ..++|.+|++++++++|||++++++++. .+..++||
T Consensus         6 ~~~~~~~~lg~g~~~~v~~~~~~~~~~valK~~~~~~~-----~~~~~~~E~~~l~~l~~~~i~~~~~~~~-~~~~~lv~   79 (262)
T cd05071           6 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-----SPEAFLQEAQVMKKLRHEKLVQLYAVVS-EEPIYIVT   79 (262)
T ss_pred             HHeeEeeecCCCCCCcEEEEEecCCceEEEEecccCcc-----CHHHHHHHHHHHHhCCCCCcceEEEEEC-CCCcEEEE
Confidence            45788889999999999999876667899999875321     2357999999999999999999999874 45689999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      ||+++|+|.+++
T Consensus        80 e~~~~~~L~~~~   91 (262)
T cd05071          80 EYMSKGSLLDFL   91 (262)
T ss_pred             EcCCCCcHHHHH
Confidence            999999999886

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=98.92  E-value=2.8e-09  Score=111.20  Aligned_cols=85  Identities=24%  Similarity=0.352  Sum_probs=67.5

Q ss_pred             ccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHH-HHhcCCCCCccccceEEEeCCeeeEEEcccC
Q 041300          630 YCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQ-ALTEIRHRNIVKFYGFCSHAQHSFLVYEFLE  707 (716)
Q Consensus       630 ~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~-~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~  707 (716)
                      ++||+|+||.||+|+.. +++.||+|++.+....... ....+.+|+. +++.++|||||++++++.+.+..|+|||||+
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~-~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~   79 (321)
T cd05603           1 KVIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKK-EQNHIMAERNVLLKNLKHPFLVGLHYSFQTAEKLYFVLDYVN   79 (321)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhh-HHHHHHHHHHHHHHhCCCCCccceeeEEEcCCEEEEEEcCCC
Confidence            36899999999999754 6889999998753211111 2345666654 5788999999999999999999999999999


Q ss_pred             CCCHHhHh
Q 041300          708 RGSLAAIL  715 (716)
Q Consensus       708 ~GsL~~~l  715 (716)
                      +|+|.+++
T Consensus        80 ~~~L~~~l   87 (321)
T cd05603          80 GGELFFHL   87 (321)
T ss_pred             CCCHHHHH
Confidence            99998765

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=98.92  E-value=3.4e-09  Score=109.58  Aligned_cols=88  Identities=20%  Similarity=0.353  Sum_probs=73.2

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ++|...+.||+|+||.||+|+.. +++.||||++.......   ....+.+|++++++++|||||++++++.+++..++|
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~---~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv   81 (303)
T cd07869           5 DSYEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEG---TPFTAIREASLLKGLKHANIVLLHDIIHTKETLTLV   81 (303)
T ss_pred             ccceEeeeEEecCCEEEEEEEECCCCCEEEEEEeccccccc---cchhHHHHHHHHhhCCCCCcCeEEEEEecCCeEEEE
Confidence            56888899999999999999754 68899999987532111   234578899999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      ||||+ |+|.+++
T Consensus        82 ~e~~~-~~l~~~~   93 (303)
T cd07869          82 FEYVH-TDLCQYM   93 (303)
T ss_pred             EECCC-cCHHHHH
Confidence            99996 5776654

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=98.92  E-value=2.5e-09  Score=108.19  Aligned_cols=87  Identities=30%  Similarity=0.550  Sum_probs=75.4

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      .+|...+.||+|+||.||+|... .++.||+|++....     ....+|.+|++++.+++|||++++++++..++..++|
T Consensus         6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~~-----~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   80 (263)
T cd05052           6 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-----MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII   80 (263)
T ss_pred             HHeEEeeecCCcccceEEEEEEecCCceEEEEEecCCc-----hHHHHHHHHHHHHHhCCCCChhheEEEEcCCCCcEEE
Confidence            35778889999999999999754 47889999986421     1346799999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      |||+++|+|.+++
T Consensus        81 ~e~~~~~~L~~~~   93 (263)
T cd05052          81 TEFMTYGNLLDYL   93 (263)
T ss_pred             EEeCCCCcHHHHH
Confidence            9999999999876

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=98.92  E-value=2.7e-09  Score=110.28  Aligned_cols=89  Identities=24%  Similarity=0.433  Sum_probs=74.6

Q ss_pred             cCCcccccccCCCceEEEEEEc------CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeC
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL------PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHA  696 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~------~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~  696 (716)
                      .+|...+.||+|+||.||++..      ..+..||||++.....   ....+.+.+|+++++++ +||||+++++++...
T Consensus        35 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~  111 (302)
T cd05055          35 NNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAH---SSEREALMSELKIMSHLGNHENIVNLLGACTIG  111 (302)
T ss_pred             HHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCC---hHHHHHHHHHHHHHHhccCCCCcceEEEEEecC
Confidence            4688889999999999999953      1345799999875321   11346799999999999 799999999999999


Q ss_pred             CeeeEEEcccCCCCHHhHh
Q 041300          697 QHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       697 ~~~~lv~Ey~~~GsL~~~l  715 (716)
                      +..++||||+++|+|.+++
T Consensus       112 ~~~~lv~e~~~~~~L~~~i  130 (302)
T cd05055         112 GPILVITEYCCYGDLLNFL  130 (302)
T ss_pred             CceEEEEEcCCCCcHHHHH
Confidence            9999999999999999886

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=98.92  E-value=2.6e-09  Score=111.30  Aligned_cols=85  Identities=25%  Similarity=0.378  Sum_probs=69.5

Q ss_pred             ccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeCCeeeEEEcccC
Q 041300          630 YCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHSFLVYEFLE  707 (716)
Q Consensus       630 ~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~~~~~lv~Ey~~  707 (716)
                      ++||+|+||+||++... ++..||||++.+...... .....+.+|++++..+ +||||+++++++...+..++||||++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~-~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~   79 (318)
T cd05570           1 KVLGKGSFGKVLLAELKGTDELYAVKVLKKDVILQD-DDVECTMTEKRVLALAGKHPFLTQLHSCFQTKDRLFFVMEYVN   79 (318)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhh-hHHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCC
Confidence            36899999999999754 578999999975321111 1345678899998887 79999999999999999999999999


Q ss_pred             CCCHHhHh
Q 041300          708 RGSLAAIL  715 (716)
Q Consensus       708 ~GsL~~~l  715 (716)
                      +|+|.+++
T Consensus        80 ~~~L~~~~   87 (318)
T cd05570          80 GGDLMFHI   87 (318)
T ss_pred             CCCHHHHH
Confidence            99998765

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=98.91  E-value=2.9e-09  Score=111.27  Aligned_cols=90  Identities=20%  Similarity=0.314  Sum_probs=72.5

Q ss_pred             CCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCC-CccccceEEEeCCeeeEE
Q 041300          625 DFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHR-NIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~-niv~l~g~~~~~~~~~lv  702 (716)
                      +|...+.||+|+||.||+|... +++.||||++.+...... ...+.+..|++++..++|+ +|+++++++...+..|+|
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~-~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv   79 (324)
T cd05587           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQD-DDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFV   79 (324)
T ss_pred             CceEEEEEeeccCeEEEEEEECCCCCEEEEEEEEHHHhhhh-hHHHHHHHHHHHHHhcCCCCceeeeEEEEEcCCEEEEE
Confidence            4677889999999999999754 578999999875322111 1345688899999999765 588888899888999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      |||+++|+|.+++
T Consensus        80 ~E~~~~g~L~~~~   92 (324)
T cd05587          80 MEYVNGGDLMYHI   92 (324)
T ss_pred             EcCCCCCcHHHHH
Confidence            9999999998875

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=98.91  E-value=2.7e-09  Score=108.83  Aligned_cols=90  Identities=27%  Similarity=0.460  Sum_probs=75.2

Q ss_pred             hcCCcccccccCCCceEEEEEEcC------CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELP------SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA  696 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~------~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~  696 (716)
                      .++|...+.||+|+||.||+|...      .+..||+|.+....   .......|.+|+.++++++|+||+++++++.+.
T Consensus         5 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~---~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~   81 (277)
T cd05036           5 RDSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESC---SEQDESDFLMEALIMSKFNHQNIVRLIGVSFER   81 (277)
T ss_pred             HHHcEeeeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCC---CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccC
Confidence            456888899999999999999764      34678999886422   111345699999999999999999999999998


Q ss_pred             CeeeEEEcccCCCCHHhHh
Q 041300          697 QHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       697 ~~~~lv~Ey~~~GsL~~~l  715 (716)
                      +..++||||+++|+|.+++
T Consensus        82 ~~~~lv~e~~~g~~L~~~i  100 (277)
T cd05036          82 LPRFILLELMAGGDLKSFL  100 (277)
T ss_pred             CCcEEEEecCCCCCHHHHH
Confidence            8999999999999999876

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=98.91  E-value=2.7e-09  Score=109.95  Aligned_cols=89  Identities=22%  Similarity=0.457  Sum_probs=74.1

Q ss_pred             cCCcccccccCCCceEEEEEEcC-----------------CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCc
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-----------------SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNI  686 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-----------------~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~ni  686 (716)
                      ++|...+.||+|+||.||++...                 ++..||+|++....   ......+|.+|++++++++|+||
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~---~~~~~~~~~~E~~~l~~l~~~~i   81 (296)
T cd05095           5 KRLTFKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDA---NKNARNDFLKEIKIMSRLKDPNI   81 (296)
T ss_pred             hhceeeeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccC---CHHHHHHHHHHHHHHHhCCCCCc
Confidence            45888889999999999998532                 23468999987532   11245679999999999999999


Q ss_pred             cccceEEEeCCeeeEEEcccCCCCHHhHh
Q 041300          687 VKFYGFCSHAQHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       687 v~l~g~~~~~~~~~lv~Ey~~~GsL~~~l  715 (716)
                      +++++++...+..++||||+++|+|.+++
T Consensus        82 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~l  110 (296)
T cd05095          82 IRLLAVCITSDPLCMITEYMENGDLNQFL  110 (296)
T ss_pred             ceEEEEEecCCccEEEEEeCCCCcHHHHH
Confidence            99999999999999999999999999886

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=98.91  E-value=9.5e-10  Score=96.91  Aligned_cols=87  Identities=28%  Similarity=0.430  Sum_probs=69.9

Q ss_pred             CCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          625 DFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      +|+..++||+|.||+|++|+ +..++.||.|+.+.....+.  -...-.+||-++++++|.|||++++....+...-+|+
T Consensus         3 ~ydkmekigegtygtvfkarn~~t~eivalkrvrlddddeg--vpssalreicllkelkhknivrl~dvlhsdkkltlvf   80 (292)
T KOG0662|consen    3 KYDKMEKIGEGTYGTVFKARNRETHEIVALKRVRLDDDDEG--VPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVF   80 (292)
T ss_pred             chHHHHhhcCCcceeeEecccCCccceEEEEEEeccCCCCC--CcHHHHHHHHHHHHhhhcceeehhhhhccCceeEEeH
Confidence            46667789999999999996 45688999999875432221  2345789999999999999999999999999999999


Q ss_pred             cccCCCCHHhH
Q 041300          704 EFLERGSLAAI  714 (716)
Q Consensus       704 Ey~~~GsL~~~  714 (716)
                      |||.. +|.+|
T Consensus        81 e~cdq-dlkky   90 (292)
T KOG0662|consen   81 EFCDQ-DLKKY   90 (292)
T ss_pred             HHhhH-HHHHH
Confidence            99975 45443

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=98.91  E-value=4.2e-09  Score=105.95  Aligned_cols=88  Identities=17%  Similarity=0.329  Sum_probs=74.7

Q ss_pred             CcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEc
Q 041300          626 FDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYE  704 (716)
Q Consensus       626 ~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~E  704 (716)
                      |+..++||+|+||.||.++. .++..||+|.+...... . ...+++.+|++++++++|+|++++++++.+.+..++|||
T Consensus         2 y~~~~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~-~-~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~~~e   79 (256)
T cd08221           2 YIPIRVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRLS-E-KERRDALNEIVILSLLQHPNIIAYYNHFMDDNTLLIEME   79 (256)
T ss_pred             ceEeeEecccCCceEEEEEEcCCCcEEEEEEEeecccc-h-hHHHHHHHHHHHHHhCCCCCeeEEEeEEecCCeEEEEEE
Confidence            67788999999999998863 46888999998653221 1 245678999999999999999999999999999999999


Q ss_pred             ccCCCCHHhHh
Q 041300          705 FLERGSLAAIL  715 (716)
Q Consensus       705 y~~~GsL~~~l  715 (716)
                      ||++|+|.+++
T Consensus        80 ~~~~~~L~~~~   90 (256)
T cd08221          80 YANGGTLYDKI   90 (256)
T ss_pred             ecCCCcHHHHH
Confidence            99999999876

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=98.91  E-value=5.7e-09  Score=106.53  Aligned_cols=87  Identities=28%  Similarity=0.435  Sum_probs=73.5

Q ss_pred             CCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          625 DFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      +|...++||+|+||.||+|.. .++..||+|++....   .....++|.+|++++.+++|||++++++++..++..++||
T Consensus         2 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~   78 (279)
T cd06619           2 DIQYQEILGHGNGGTVYKAYHLLTRRILAVKVIPLDI---TVELQKQIMSELEILYKCDSPYIIGFYGAFFVENRISICT   78 (279)
T ss_pred             cchheeeeccCCCeEEEEEEEcCCCcEEEEEEEecCC---ChHHHHHHHHHHHHHHhCCCCCeeeEEEEEEECCEEEEEE
Confidence            466778899999999999964 468899999986532   1113467999999999999999999999999999999999


Q ss_pred             cccCCCCHHhH
Q 041300          704 EFLERGSLAAI  714 (716)
Q Consensus       704 Ey~~~GsL~~~  714 (716)
                      ||+++|+|..+
T Consensus        79 e~~~~~~l~~~   89 (279)
T cd06619          79 EFMDGGSLDVY   89 (279)
T ss_pred             ecCCCCChHHh
Confidence            99999998754

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=98.91  E-value=3.6e-09  Score=109.58  Aligned_cols=90  Identities=24%  Similarity=0.344  Sum_probs=75.6

Q ss_pred             CCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          625 DFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      +|...+.||+|+||.||++... .++.||+|.+........ ...+.+.+|+++++.++||||+++++++..++..++||
T Consensus         2 ~y~~~~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~-~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (305)
T cd05609           2 DFETIKLISNGAYGAVYLVRHKETRQRFAMKKINKQNLILR-NQIQQVFVERDILTFAENPFVVSMFCSFETKRHLCMVM   80 (305)
T ss_pred             CceEeeEeecCCCeeEEEEEECCCCcEEEEEEeehhhhhhH-HHHHHHHHHHHHHHhCCCCCeeeeEEEEecCCEEEEEE
Confidence            5778889999999999999654 578999999875321111 13457889999999999999999999999999999999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      ||+++|+|.+++
T Consensus        81 e~~~g~~L~~~l   92 (305)
T cd05609          81 EYVEGGDCATLL   92 (305)
T ss_pred             ecCCCCcHHHHH
Confidence            999999999886

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=98.91  E-value=7.3e-10  Score=114.27  Aligned_cols=85  Identities=31%  Similarity=0.589  Sum_probs=70.7

Q ss_pred             cchHHHHHHhhcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceE
Q 041300          613 KLVYDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGF  692 (716)
Q Consensus       613 ~~~~~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~  692 (716)
                      +++|++|.       ..+.+|+|+-|.||.|++ .++.||||+.+..           -..+|+-|++++||||+.+.|+
T Consensus       120 eiPFe~Is-------ELeWlGSGaQGAVF~Grl-~netVAVKKV~el-----------kETdIKHLRkLkH~NII~FkGV  180 (904)
T KOG4721|consen  120 EIPFEEIS-------ELEWLGSGAQGAVFLGRL-HNETVAVKKVREL-----------KETDIKHLRKLKHPNIITFKGV  180 (904)
T ss_pred             cCCHHHhh-------hhhhhccCcccceeeeec-cCceehhHHHhhh-----------hhhhHHHHHhccCcceeeEeee
Confidence            45566553       345799999999999998 4678999987542           1357888999999999999999


Q ss_pred             EEeCCeeeEEEcccCCCCHHhHhC
Q 041300          693 CSHAQHSFLVYEFLERGSLAAILS  716 (716)
Q Consensus       693 ~~~~~~~~lv~Ey~~~GsL~~~l~  716 (716)
                      |.....+.||||||+.|-|...|+
T Consensus       181 CtqsPcyCIiMEfCa~GqL~~VLk  204 (904)
T KOG4721|consen  181 CTQSPCYCIIMEFCAQGQLYEVLK  204 (904)
T ss_pred             ecCCceeEEeeeccccccHHHHHh
Confidence            999999999999999999998764

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=98.91  E-value=2.8e-09  Score=110.95  Aligned_cols=88  Identities=23%  Similarity=0.470  Sum_probs=71.9

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCC----EEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCe
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGE----VVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQH  698 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~----~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~  698 (716)
                      .+|...+.||+|+||.||+|.+. ++.    .||||++....   .....++|.+|+.+++.++||||++++|+|... .
T Consensus         7 ~~f~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~g~~~~~-~   82 (316)
T cd05108           7 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT---SPKANKEILDEAYVMASVDNPHVCRLLGICLTS-T   82 (316)
T ss_pred             hhceeeeeeecCCCceEEEEEEecCCCccceeEEEEeccccC---CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEcCC-C
Confidence            35888899999999999999753 333    48999986422   112456799999999999999999999999764 5


Q ss_pred             eeEEEcccCCCCHHhHh
Q 041300          699 SFLVYEFLERGSLAAIL  715 (716)
Q Consensus       699 ~~lv~Ey~~~GsL~~~l  715 (716)
                      .++|+||+++|+|.+++
T Consensus        83 ~~~v~e~~~~g~l~~~l   99 (316)
T cd05108          83 VQLITQLMPFGCLLDYV   99 (316)
T ss_pred             ceeeeecCCCCCHHHHH
Confidence            78999999999999876

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.90  E-value=1.2e-10  Score=125.21  Aligned_cols=198  Identities=28%  Similarity=0.339  Sum_probs=151.0

Q ss_pred             CCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcE
Q 041300          306 GLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTK  385 (716)
Q Consensus       306 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  385 (716)
                      ..+..++.+++..|.+.. +...+..+.+|..|++..|+|.... ..+..+++|++|++++|.|+...  .+..++.|+.
T Consensus        69 ~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~  144 (414)
T KOG0531|consen   69 ESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKE  144 (414)
T ss_pred             HHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcc-cchhhhhcchheecccccccccc--chhhccchhh
Confidence            345667777788887765 2344677889999999999998543 33778999999999999998653  3566777999


Q ss_pred             EEccCCcccccCCcccCCCCCCCEEEccCCcCCccCc-hhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCc
Q 041300          386 LILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVP-ESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNL  464 (716)
Q Consensus       386 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~  464 (716)
                      |++++|.|+..  ..+..++.|+.+++++|.+....+ . ...+.+++.+++.+|.+..  ...+..+..+..+++..|.
T Consensus       145 L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~  219 (414)
T KOG0531|consen  145 LNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNK  219 (414)
T ss_pred             heeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhccccc
Confidence            99999999843  457779999999999999986554 2 5778899999999999873  3334445566666899998


Q ss_pred             CccccchhccCCC--CCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCcccc
Q 041300          465 FGGEIPFQICSLK--SLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQG  515 (716)
Q Consensus       465 l~~~~p~~~~~l~--~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~  515 (716)
                      ++..-+..  .+.  .|+.+++++|++... +..+..+..+..+|+.+|++..
T Consensus       220 i~~~~~l~--~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~~  269 (414)
T KOG0531|consen  220 ISKLEGLN--ELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRISN  269 (414)
T ss_pred             ceeccCcc--cchhHHHHHHhcccCccccc-cccccccccccccchhhccccc
Confidence            87443322  223  389999999999843 3566778889999999999865

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=98.90  E-value=4.8e-09  Score=106.95  Aligned_cols=88  Identities=23%  Similarity=0.384  Sum_probs=74.9

Q ss_pred             CCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          625 DFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      .|+..+.||+|+||.||+|... ++..||+|++.....   ......+.+|++++++++|||++++++++.+++..++||
T Consensus         5 ~y~~~~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   81 (277)
T cd06640           5 LFTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEA---EDEIEDIQQEITVLSQCDSPYVTKYYGSYLKGTKLWIIM   81 (277)
T ss_pred             hhhhhhhcccCCCeEEEEEEEccCCEEEEEEEEecccc---HHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEE
Confidence            3566778999999999999754 578999999875321   123467999999999999999999999999999999999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      ||+++|+|.+++
T Consensus        82 e~~~~~~L~~~i   93 (277)
T cd06640          82 EYLGGGSALDLL   93 (277)
T ss_pred             ecCCCCcHHHHH
Confidence            999999999876

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=98.90  E-value=3.4e-09  Score=108.44  Aligned_cols=89  Identities=29%  Similarity=0.566  Sum_probs=74.4

Q ss_pred             cCCcccccccCCCceEEEEEEcCC------CCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELPS------GEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ  697 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~~------~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~  697 (716)
                      .+|...+.||+|+||.||+|....      ...||+|.+....   ......+|.+|++++.+++||||+++++++...+
T Consensus         5 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~---~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~   81 (283)
T cd05048           5 SAVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENA---EPKVQQEFRQEAELMSDLQHPNIVCLLGVCTKEQ   81 (283)
T ss_pred             HHcchhhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCC---CHHHHHHHHHHHHHHHhcCCcccceEEEEEcCCC
Confidence            357788899999999999996532      2579999987532   1123467999999999999999999999999888


Q ss_pred             eeeEEEcccCCCCHHhHh
Q 041300          698 HSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       698 ~~~lv~Ey~~~GsL~~~l  715 (716)
                      ..+++|||+++|+|.+++
T Consensus        82 ~~~~~~e~~~~~~L~~~l   99 (283)
T cd05048          82 PTCMLFEYLAHGDLHEFL   99 (283)
T ss_pred             ceEEEEecCCCCcHHHHH
Confidence            999999999999999886

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=98.90  E-value=5.2e-10  Score=110.29  Aligned_cols=83  Identities=31%  Similarity=0.465  Sum_probs=65.8

Q ss_pred             CCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC---e--
Q 041300          625 DFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ---H--  698 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~---~--  698 (716)
                      .|...+++|.|+||.||+|.+. .+..||||+......        .--+|.++|+.++|||||++.-++....   .  
T Consensus        25 ~~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r--------~knrEl~im~~l~HpNIV~L~~~f~~~~~~d~~~   96 (364)
T KOG0658|consen   25 SYEAVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKR--------YKNRELQIMRKLDHPNIVRLLYFFSSSTESDEVY   96 (364)
T ss_pred             EEEeeEEEeecccceEEEEEEcCCCceeEEEEecCCCC--------cCcHHHHHHHhcCCcCeeeEEEEEEecCCCchhH
Confidence            4667889999999999999765 468999998865322        2347899999999999999999886532   2  


Q ss_pred             eeEEEcccCCCCHHhHhC
Q 041300          699 SFLVYEFLERGSLAAILS  716 (716)
Q Consensus       699 ~~lv~Ey~~~GsL~~~l~  716 (716)
                      .-+|||||+. +|.+.++
T Consensus        97 lnlVleymP~-tL~~~~r  113 (364)
T KOG0658|consen   97 LNLVLEYMPE-TLYRVIR  113 (364)
T ss_pred             HHHHHHhchH-HHHHHHH
Confidence            3489999998 7877653

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=98.90  E-value=2.5e-09  Score=109.02  Aligned_cols=87  Identities=25%  Similarity=0.423  Sum_probs=73.4

Q ss_pred             CcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEc
Q 041300          626 FDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYE  704 (716)
Q Consensus       626 ~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~E  704 (716)
                      |...+.||+|+||.||+|.. .++..||+|.+.....   ....+.+.+|++++++++|||++++++++..++..++|||
T Consensus         6 y~~~~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   82 (277)
T cd06642           6 FTKLERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEA---EDEIEDIQQEITVLSQCDSPYITRYYGSYLKGTKLWIIME   82 (277)
T ss_pred             HHHHHHhcCCCCeeEEEEEEcCCCeEEEEEEeccccc---hHHHHHHHHHHHHHHcCCCCccHhhhcccccCCceEEEEE
Confidence            55567799999999999964 4578899999864321   1134679999999999999999999999999999999999


Q ss_pred             ccCCCCHHhHh
Q 041300          705 FLERGSLAAIL  715 (716)
Q Consensus       705 y~~~GsL~~~l  715 (716)
                      |+++|+|.+++
T Consensus        83 ~~~~~~L~~~~   93 (277)
T cd06642          83 YLGGGSALDLL   93 (277)
T ss_pred             ccCCCcHHHHh
Confidence            99999998875

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=98.90  E-value=1.6e-09  Score=114.20  Aligned_cols=91  Identities=23%  Similarity=0.403  Sum_probs=77.9

Q ss_pred             cCCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      +.|..++-+|+|+-|.|..|+ ..+|+.+|||.+.+.....+. ......+||.+|+-+.|||+++++++.++..+.|+|
T Consensus        12 GpwkLgkTLG~Gstg~vrlakh~~TGqlaaiKii~k~~~~s~s-~~~~IerEIviMkLi~HpnVl~LydVwe~~~~lylv   90 (786)
T KOG0588|consen   12 GPWKLGKTLGKGSTGCVRLAKHAETGQLAAIKIIPKRSELSSS-QPAGIEREIVIMKLIEHPNVLRLYDVWENKQHLYLV   90 (786)
T ss_pred             cceeccccccCCCCceehhhhcccccceeEEEeeccccccccc-cccchhhhhHHHHHhcCCCeeeeeeeeccCceEEEE
Confidence            457778889999999999994 568999999999875322221 234588999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      .||+++|.|++++
T Consensus        91 lEyv~gGELFdyl  103 (786)
T KOG0588|consen   91 LEYVPGGELFDYL  103 (786)
T ss_pred             EEecCCchhHHHH
Confidence            9999999999987

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=98.90  E-value=3.7e-09  Score=107.20  Aligned_cols=89  Identities=26%  Similarity=0.560  Sum_probs=74.6

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CC---CEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCee
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SG---EVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHS  699 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~---~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~  699 (716)
                      .+|+..+.||+|+||.||+|... ++   ..||||.+.....  . ...++|.+|++++.+++|||++++.+++...+..
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~--~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   81 (268)
T cd05063           5 SHITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYT--E-KQRQDFLSEASIMGQFSHHNIIRLEGVVTKFKPA   81 (268)
T ss_pred             HHceEeeEecCCCCccEEEEEEecCCCCceEEEEEeccccCC--H-HHHHHHHHHHHHHhcCCCCCeeEEEEEEccCCCc
Confidence            46778889999999999999764 23   3789999865321  1 1356799999999999999999999999999999


Q ss_pred             eEEEcccCCCCHHhHh
Q 041300          700 FLVYEFLERGSLAAIL  715 (716)
Q Consensus       700 ~lv~Ey~~~GsL~~~l  715 (716)
                      ++||||+++|+|.+++
T Consensus        82 ~lv~e~~~~~~L~~~~   97 (268)
T cd05063          82 MIITEYMENGALDKYL   97 (268)
T ss_pred             EEEEEcCCCCCHHHHH
Confidence            9999999999999876

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=98.90  E-value=3.8e-09  Score=110.38  Aligned_cols=85  Identities=26%  Similarity=0.388  Sum_probs=67.6

Q ss_pred             ccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHH-HHhcCCCCCccccceEEEeCCeeeEEEcccC
Q 041300          630 YCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQ-ALTEIRHRNIVKFYGFCSHAQHSFLVYEFLE  707 (716)
Q Consensus       630 ~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~-~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~  707 (716)
                      ++||+|+||+||++.. .+|+.||||++.+....... ...++.+|.. +++.++||||+++++++...+..|+||||++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~-~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~~~~~~lv~e~~~   79 (325)
T cd05604           1 KVIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRK-EQKHIMAERNVLLKNVKHPFLVGLHYSFQTTEKLYFVLDFVN   79 (325)
T ss_pred             CceeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhh-HHHHHHHHHHHHHHhCCCCCCccEEEEEecCCEEEEEEcCCC
Confidence            3689999999999964 46899999998753221111 3345666665 4678999999999999999999999999999


Q ss_pred             CCCHHhHh
Q 041300          708 RGSLAAIL  715 (716)
Q Consensus       708 ~GsL~~~l  715 (716)
                      +|+|.+++
T Consensus        80 ~~~L~~~l   87 (325)
T cd05604          80 GGELFFHL   87 (325)
T ss_pred             CCCHHHHH
Confidence            99998775

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=98.90  E-value=3.4e-09  Score=106.98  Aligned_cols=86  Identities=26%  Similarity=0.474  Sum_probs=74.3

Q ss_pred             cCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      +.|...+.||+|+||.||++...++..+|+|.+....     .....|.+|++++++++|+|++++++++.. ...++||
T Consensus         6 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~iK~~~~~~-----~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-~~~~~v~   79 (260)
T cd05073           6 ESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS-----MSVEAFLAEANVMKTLQHDKLVKLHAVVTK-EPIYIIT   79 (260)
T ss_pred             cceeEEeEecCccceEEEEEEecCCccEEEEecCCCh-----hHHHHHHHHHHHHHhcCCCCcceEEEEEcC-CCeEEEE
Confidence            4678889999999999999987777789999886421     134679999999999999999999999877 7789999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      ||+++|+|.+++
T Consensus        80 e~~~~~~L~~~~   91 (260)
T cd05073          80 EFMAKGSLLDFL   91 (260)
T ss_pred             EeCCCCcHHHHH
Confidence            999999999886

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.90  E-value=9.2e-10  Score=83.01  Aligned_cols=61  Identities=33%  Similarity=0.458  Sum_probs=37.8

Q ss_pred             CCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcccccC
Q 041300           76 PQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNEL  136 (716)
Q Consensus        76 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l  136 (716)
                      |+|++|++++|++..+.+..|.++++|++|++++|.++...|.+|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3556666666666655556666666666666666666655555666666666666666643

...

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=98.90  E-value=3.3e-09  Score=108.04  Aligned_cols=90  Identities=24%  Similarity=0.522  Sum_probs=74.7

Q ss_pred             cCCcccccccCCCceEEEEEEcC------CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP------SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ  697 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~------~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~  697 (716)
                      .+|.....||+|+||.||+|+..      +...||+|.+....   .....++|.+|++++++++|+|++++++++.+.+
T Consensus         5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~   81 (275)
T cd05046           5 SNLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTK---DENLQSEFRRELDMFRKLSHKNVVRLLGLCREAE   81 (275)
T ss_pred             HhceeeeeecccceeEEEEEEeccCCcCCCcceEEEEccCCcc---chHHHHHHHHHHHHHHhcCCcceeeeEEEECCCC
Confidence            45778888999999999999753      24578999886532   1113467999999999999999999999999888


Q ss_pred             eeeEEEcccCCCCHHhHhC
Q 041300          698 HSFLVYEFLERGSLAAILS  716 (716)
Q Consensus       698 ~~~lv~Ey~~~GsL~~~l~  716 (716)
                      ..++||||+++|+|.++++
T Consensus        82 ~~~lv~e~~~~~~L~~~i~  100 (275)
T cd05046          82 PHYMILEYTDLGDLKQFLR  100 (275)
T ss_pred             cceEEEEecCCCcHHHHHH
Confidence            9999999999999998863

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=98.90  E-value=4.2e-09  Score=120.23  Aligned_cols=91  Identities=24%  Similarity=0.312  Sum_probs=77.7

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      .+|...+.||+|+||.||+|... +++.||||++........ .....+.+|+.++..++|||||++++++...+..|+|
T Consensus         4 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~~~-~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lV   82 (669)
T cd05610           4 EEFVIVKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINK-NMVHQVQAERDALALSKSPFIVHLYYSLQSANNVYLV   82 (669)
T ss_pred             CCEEEEEEEecCCCeEEEEEEECCCCcEEEEEEEehhhccCH-HHHHHHHHHHHHHHhcCCCCcCeEEEEEEECCEEEEE
Confidence            46888899999999999999754 688999999975432222 1346789999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      ||||++|+|.+++
T Consensus        83 mEy~~g~~L~~li   95 (669)
T cd05610          83 MEYLIGGDVKSLL   95 (669)
T ss_pred             EeCCCCCCHHHHH
Confidence            9999999999886

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=98.90  E-value=4.2e-09  Score=107.02  Aligned_cols=91  Identities=29%  Similarity=0.435  Sum_probs=73.4

Q ss_pred             CcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCcc------chhhHHHHHHHHHHHhcCCCCCccccceEEEeCCe
Q 041300          626 FDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCD------QIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQH  698 (716)
Q Consensus       626 ~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~------~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~  698 (716)
                      |...+.||+|+||+||+|.. .+++.||||.++......      .....+.+.+|++++++++|||++++++++..++.
T Consensus         3 ~~~~~~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   82 (272)
T cd06629           3 WVKGELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYLGFETTEEY   82 (272)
T ss_pred             eeecceecccCceEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEEEEeccCCc
Confidence            56678899999999999964 468899999885321110      01113468899999999999999999999999999


Q ss_pred             eeEEEcccCCCCHHhHhC
Q 041300          699 SFLVYEFLERGSLAAILS  716 (716)
Q Consensus       699 ~~lv~Ey~~~GsL~~~l~  716 (716)
                      .++||||+++|+|.++++
T Consensus        83 ~~lv~e~~~~~~L~~~l~  100 (272)
T cd06629          83 LSIFLEYVPGGSIGSCLR  100 (272)
T ss_pred             eEEEEecCCCCcHHHHHh
Confidence            999999999999998763

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=98.89  E-value=2.2e-09  Score=109.99  Aligned_cols=97  Identities=26%  Similarity=0.472  Sum_probs=78.5

Q ss_pred             chHHHHHHhhcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccce
Q 041300          614 LVYDEIVRETNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYG  691 (716)
Q Consensus       614 ~~~~~~~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g  691 (716)
                      +.++.+..+..+|...+.||+|+||.||++.. .+++.+|+|++....   .  ...++.+|+.++.++ +|||++++++
T Consensus         8 ~~~~~~~~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~---~--~~~~~~~e~~~l~~l~~h~~i~~~~~   82 (286)
T cd06638           8 IIFDSFPDPSDTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPIH---D--IDEEIEAEYNILKALSDHPNVVKFYG   82 (286)
T ss_pred             EEeecCCCcccceeeeeeeccCCCcEEEEEEECCCCceeEEEeecccc---c--hHHHHHHHHHHHHHHhcCCCeeeeee
Confidence            34556667788999999999999999999965 457899999876421   1  235688899999999 6999999999


Q ss_pred             EEEe-----CCeeeEEEcccCCCCHHhHh
Q 041300          692 FCSH-----AQHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       692 ~~~~-----~~~~~lv~Ey~~~GsL~~~l  715 (716)
                      ++..     ++..++||||+++|+|.+++
T Consensus        83 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~l  111 (286)
T cd06638          83 MYYKKDVKNGDQLWLVLELCNGGSVTDLV  111 (286)
T ss_pred             eeeecccCCCCeEEEEEeecCCCCHHHHH
Confidence            9843     45689999999999998865

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.89  E-value=8.5e-10  Score=114.27  Aligned_cols=88  Identities=32%  Similarity=0.469  Sum_probs=70.5

Q ss_pred             CcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEc
Q 041300          626 FDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYE  704 (716)
Q Consensus       626 ~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~E  704 (716)
                      |...+.||.|+||.||-++ ..+...||||++.-+.... ....++..+||.++.+++|||+|.+.|+|-.+...|||||
T Consensus        28 f~dLrEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs-~EKWqDIlKEVrFL~~l~HPntieYkgCyLre~TaWLVME  106 (948)
T KOG0577|consen   28 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQS-NEKWQDILKEVRFLRQLRHPNTIEYKGCYLREHTAWLVME  106 (948)
T ss_pred             HHHHHHhcCCccceeEEeeccCccceeeeeecccccccc-HHHHHHHHHHHHHHHhccCCCcccccceeeccchHHHHHH
Confidence            5556779999999999995 3467889999997643222 2234578999999999999999999999999999999999


Q ss_pred             ccCCCCHHhHh
Q 041300          705 FLERGSLAAIL  715 (716)
Q Consensus       705 y~~~GsL~~~l  715 (716)
                      ||-| +-.|.|
T Consensus       107 YClG-SAsDll  116 (948)
T KOG0577|consen  107 YCLG-SASDLL  116 (948)
T ss_pred             HHhc-cHHHHH
Confidence            9976 444443

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=98.89  E-value=3.6e-09  Score=108.05  Aligned_cols=88  Identities=26%  Similarity=0.502  Sum_probs=75.8

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ++|...+.||+|+||.||+|... ++..||+|++...   .. ...+.|.+|++++++++|||++++++++..++..|+|
T Consensus         5 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~---~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   80 (280)
T cd06611           5 DIWEIIGELGDGAFGKVYKAQHKETGLFAAAKIIQIE---SE-EELEDFMVEIDILSECKHPNIVGLYEAYFYENKLWIL   80 (280)
T ss_pred             hHHHHHHHhcCCCCceEEEEEEcCCCcEEEEEEEeeC---CH-HHHHHHHHHHHHHHhCCCCceeEEEEEEecCCeEEEE
Confidence            45777888999999999999764 5789999998642   11 2346799999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      |||+++|+|.+++
T Consensus        81 ~e~~~~~~L~~~~   93 (280)
T cd06611          81 IEFCDGGALDSIM   93 (280)
T ss_pred             eeccCCCcHHHHH
Confidence            9999999998875

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.89  E-value=4.1e-10  Score=114.20  Aligned_cols=87  Identities=29%  Similarity=0.487  Sum_probs=70.8

Q ss_pred             CCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCC-CCCccccceEEEeCC-eeeE
Q 041300          625 DFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR-HRNIVKFYGFCSHAQ-HSFL  701 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~-H~niv~l~g~~~~~~-~~~l  701 (716)
                      .|...+.+|.|.||.||+|+ ...+..||||++++.. ..+.  .-.=.|||..++++. |||||++.+++.+.+ ..|+
T Consensus        11 RY~~i~klGDGTfGsV~la~~~~~~~~VAIK~MK~Kf-~s~e--e~~nLREvksL~kln~hpniikL~Evi~d~~~~L~f   87 (538)
T KOG0661|consen   11 RYTVIRKLGDGTFGSVYLAKSKETGELVAIKKMKKKF-YSWE--ECMNLREVKSLRKLNPHPNIIKLKEVIRDNDRILYF   87 (538)
T ss_pred             HHHHHHHhcCCcceeEEEeeecCCCceeeHHHHHhhh-ccHH--HHHHHHHHHHHHhcCCCCcchhhHHHhhccCceEee
Confidence            46677889999999999995 4568899999997632 2221  122469999999998 999999999999888 8999


Q ss_pred             EEcccCCCCHHhHh
Q 041300          702 VYEFLERGSLAAIL  715 (716)
Q Consensus       702 v~Ey~~~GsL~~~l  715 (716)
                      |||||+. +|.+.+
T Consensus        88 VfE~Md~-NLYqLm  100 (538)
T KOG0661|consen   88 VFEFMDC-NLYQLM  100 (538)
T ss_pred             eHHhhhh-hHHHHH
Confidence            9999987 787765

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=98.89  E-value=4.4e-09  Score=107.89  Aligned_cols=88  Identities=32%  Similarity=0.627  Sum_probs=74.1

Q ss_pred             cCCcccccccCCCceEEEEEEc------CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL------PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ  697 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~------~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~  697 (716)
                      .+|...+.||+|+||+||++..      .++..+|+|.+...   .. ...+.|.+|++++.+++|||++++++++...+
T Consensus         5 ~~~~~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~---~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   80 (288)
T cd05093           5 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDA---SD-NARKDFHREAELLTNLQHEHIVKFYGVCVEGD   80 (288)
T ss_pred             HHeeeccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCc---CH-HHHHHHHHHHHHHHhCCCCCcceEEEEEecCC
Confidence            3577888999999999999963      23456899988652   11 24567999999999999999999999999999


Q ss_pred             eeeEEEcccCCCCHHhHh
Q 041300          698 HSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       698 ~~~lv~Ey~~~GsL~~~l  715 (716)
                      ..++||||+++|+|.+++
T Consensus        81 ~~~lv~e~~~~~~L~~~i   98 (288)
T cd05093          81 PLIMVFEYMKHGDLNKFL   98 (288)
T ss_pred             ccEEEEEcCCCCCHHHHH
Confidence            999999999999999876

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.89  E-value=1.4e-09  Score=110.88  Aligned_cols=90  Identities=26%  Similarity=0.386  Sum_probs=78.1

Q ss_pred             cCCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      .-|+.++.||+|.|+.|-.++ .=.|..||||++.+++...  .......+|+..|+-++|||||++|.+...+...|||
T Consensus        18 GLYDLekTlG~GHFAVVKLArHVFTGekVAVKviDKTKlD~--~st~hlfqEVRCMKLVQHpNiVRLYEViDTQTKlyLi   95 (864)
T KOG4717|consen   18 GLYDLEKTLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLDT--LSTGHLFQEVRCMKLVQHPNIVRLYEVIDTQTKLYLI   95 (864)
T ss_pred             eeehhhhhhcCCceehhhhhhhhcccceeEEEEecccccch--hhhhHHHHHHHHHHHhcCcCeeeeeehhcccceEEEE
Confidence            347888899999999998884 2379999999999865432  2456788999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      +|.=.+|+|+|||
T Consensus        96 LELGD~GDl~DyI  108 (864)
T KOG4717|consen   96 LELGDGGDLFDYI  108 (864)
T ss_pred             EEecCCchHHHHH
Confidence            9999999999997

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=98.89  E-value=3.6e-09  Score=110.46  Aligned_cols=90  Identities=20%  Similarity=0.316  Sum_probs=71.8

Q ss_pred             CCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCC-CCCccccceEEEeCCeeeEE
Q 041300          625 DFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR-HRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~-H~niv~l~g~~~~~~~~~lv  702 (716)
                      +|...++||+|+||+||++.. .+++.||||++.+...... ...+.+..|++++..+. |++++++++++.+.+..|+|
T Consensus         1 ~f~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~-~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv   79 (323)
T cd05615           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQD-DDVECTMVEKRVLALQDKPPFLTQLHSCFQTVDRLYFV   79 (323)
T ss_pred             CceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhh-hHHHHHHHHHHHHHhccCCCchhheeeEEecCCEEEEE
Confidence            367788999999999999965 4688999999875321111 13456788999988885 57788899999888999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      |||+++|+|.+++
T Consensus        80 ~Ey~~~g~L~~~i   92 (323)
T cd05615          80 MEYVNGGDLMYHI   92 (323)
T ss_pred             EcCCCCCcHHHHH
Confidence            9999999998875

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=98.88  E-value=4.3e-09  Score=109.11  Aligned_cols=89  Identities=26%  Similarity=0.472  Sum_probs=74.2

Q ss_pred             cCCcccccccCCCceEEEEEEcC--------CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP--------SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCS  694 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~--------~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~  694 (716)
                      ++|...+.||+|+||.||++...        +...+|+|.+.....  . ....++.+|++++.++ +||||++++++|.
T Consensus        18 ~~~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~--~-~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~   94 (307)
T cd05098          18 DRLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDAT--E-KDLSDLISEMEMMKMIGKHKNIINLLGACT   94 (307)
T ss_pred             HHeEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCC--h-HHHHHHHHHHHHHHHhcCCCCEeeEEEEEe
Confidence            46888899999999999999642        234699999875321  1 1345788999999999 7999999999999


Q ss_pred             eCCeeeEEEcccCCCCHHhHh
Q 041300          695 HAQHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       695 ~~~~~~lv~Ey~~~GsL~~~l  715 (716)
                      ..+..|+||||+++|+|.+++
T Consensus        95 ~~~~~~lv~e~~~~~~L~~~i  115 (307)
T cd05098          95 QDGPLYVIVEYASKGNLREYL  115 (307)
T ss_pred             cCCceEEEEecCCCCcHHHHH
Confidence            999999999999999999887

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=98.88  E-value=4.4e-09  Score=106.14  Aligned_cols=86  Identities=28%  Similarity=0.516  Sum_probs=73.2

Q ss_pred             cCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      ++|...+.||+|+||.||+|...++..||+|.+.....     ..+.|.+|++++++++|++++++++++. .+..++||
T Consensus         6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~k~~~~~~~-----~~~~~~~E~~~l~~l~~~~i~~~~~~~~-~~~~~lv~   79 (260)
T cd05070           6 ESLQLIKKLGNGQFGEVWMGTWNGNTKVAVKTLKPGTM-----SPESFLEEAQIMKKLRHDKLVQLYAVVS-EEPIYIVT   79 (260)
T ss_pred             HHhhhhheeccccCceEEEEEecCCceeEEEEecCCCC-----CHHHHHHHHHHHHhcCCCceEEEEeEEC-CCCcEEEE
Confidence            35777889999999999999887788899999875321     2356999999999999999999999874 55689999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      ||+++|+|.+++
T Consensus        80 e~~~~~~L~~~~   91 (260)
T cd05070          80 EYMSKGSLLDFL   91 (260)
T ss_pred             EecCCCcHHHHH
Confidence            999999999876

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=98.88  E-value=7.2e-09  Score=104.71  Aligned_cols=92  Identities=23%  Similarity=0.398  Sum_probs=76.4

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccc-hhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQ-IADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL  701 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~-~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l  701 (716)
                      ++|...+.||+|+||.||++.. .++..||+|.+........ ....+.+.+|++++++++||||+++++++..++..++
T Consensus         2 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   81 (263)
T cd06625           2 TNWRRGKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCLRDDETLSI   81 (263)
T ss_pred             CcccccceecCCCceEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEccCCeEEE
Confidence            4688889999999999999964 4688999999865322111 1123568999999999999999999999999999999


Q ss_pred             EEcccCCCCHHhHh
Q 041300          702 VYEFLERGSLAAIL  715 (716)
Q Consensus       702 v~Ey~~~GsL~~~l  715 (716)
                      ||||+++|+|.+++
T Consensus        82 v~e~~~~~~l~~~~   95 (263)
T cd06625          82 FMEYMPGGSVKDQL   95 (263)
T ss_pred             EEEECCCCcHHHHH
Confidence            99999999998875

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=98.88  E-value=4.7e-09  Score=106.40  Aligned_cols=88  Identities=30%  Similarity=0.477  Sum_probs=74.8

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      .+|...+.||+|+||.||+|.. .+++.||+|.++...   . .....+.+|+.++..++|||++++++++..++..|+|
T Consensus         9 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~---~-~~~~~~~~e~~~~~~l~h~~ii~~~~~~~~~~~~~lv   84 (267)
T cd06645           9 EDFELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEP---G-EDFAVVQQEIIMMKDCKHSNIVAYFGSYLRRDKLWIC   84 (267)
T ss_pred             HHHHHHHHhCCCCCeEEEEEEEcCCCcEEEEEEEecCc---h-hHHHHHHHHHHHHHhCCCCCeeeEEEEEEeCCEEEEE
Confidence            3577778899999999999964 468899999986531   1 1335688999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      |||+++|+|.+++
T Consensus        85 ~e~~~~~~L~~~~   97 (267)
T cd06645          85 MEFCGGGSLQDIY   97 (267)
T ss_pred             EeccCCCcHHHHH
Confidence            9999999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=98.88  E-value=4.9e-09  Score=109.49  Aligned_cols=90  Identities=20%  Similarity=0.329  Sum_probs=72.3

Q ss_pred             CCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeCCeeeEE
Q 041300          625 DFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~~~~~lv  702 (716)
                      +|...++||+|+||+||+|... ++..||||++.+...... .....+..|+.++... +|++++++++++...+..|+|
T Consensus         1 df~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~-~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv   79 (323)
T cd05616           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQD-DDVECTMVEKRVLALSGKPPFLTQLHSCFQTMDRLYFV   79 (323)
T ss_pred             CceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhh-hHHHHHHHHHHHHHhccCCCeEeeEEEEEecCCEEEEE
Confidence            4677889999999999999654 578999999875322111 1334577788888777 589999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      |||+++|+|.+++
T Consensus        80 ~E~~~~g~L~~~~   92 (323)
T cd05616          80 MEYVNGGDLMYQI   92 (323)
T ss_pred             EcCCCCCCHHHHH
Confidence            9999999998775

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=98.88  E-value=4.3e-09  Score=108.82  Aligned_cols=89  Identities=29%  Similarity=0.565  Sum_probs=73.5

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCC--EEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeCCee
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGE--VVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHS  699 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~--~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~~~~  699 (716)
                      .+|...++||+|+||.||+|... ++.  .+|+|++....   .......|.+|++++.++ +||||+++++++...+..
T Consensus         7 ~~~~~~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~---~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~~~~~~~   83 (303)
T cd05088           7 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYA---SKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYL   83 (303)
T ss_pred             hhceeeeeecCCCCceEEEEEEccCCceeeEEEEEecccC---CHHHHHHHHHHHHHHHHhcCCCCcceEEEEECCCCCc
Confidence            46788889999999999999754 344  45788776421   112446789999999999 899999999999999999


Q ss_pred             eEEEcccCCCCHHhHh
Q 041300          700 FLVYEFLERGSLAAIL  715 (716)
Q Consensus       700 ~lv~Ey~~~GsL~~~l  715 (716)
                      |+||||+++|+|.+++
T Consensus        84 ~lv~e~~~~~~L~~~l   99 (303)
T cd05088          84 YLAIEYAPHGNLLDFL   99 (303)
T ss_pred             eEEEEeCCCCcHHHHH
Confidence            9999999999999886

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=98.88  E-value=5.1e-09  Score=109.49  Aligned_cols=85  Identities=21%  Similarity=0.295  Sum_probs=70.0

Q ss_pred             ccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeCCeeeEEEcccC
Q 041300          630 YCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHSFLVYEFLE  707 (716)
Q Consensus       630 ~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~~~~~lv~Ey~~  707 (716)
                      ++||+|+||+||++... +++.||||++.+...... ...+.+.+|+.++.++ +||+|+++++++...+..|+|||||+
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~   79 (327)
T cd05617           1 RVIGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDD-EDIDWVQTEKHVFEQASSNPFLVGLHSCFQTTSRLFLVIEYVN   79 (327)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhh-hHHHHHHHHHHHHHhhcCCCCEeeEEEEEEeCCEEEEEEeCCC
Confidence            36899999999999754 578999999976322221 1345688999999888 69999999999999999999999999


Q ss_pred             CCCHHhHh
Q 041300          708 RGSLAAIL  715 (716)
Q Consensus       708 ~GsL~~~l  715 (716)
                      +|+|.+++
T Consensus        80 ~~~L~~~~   87 (327)
T cd05617          80 GGDLMFHM   87 (327)
T ss_pred             CCcHHHHH
Confidence            99998765

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.87  E-value=2.1e-09  Score=114.13  Aligned_cols=91  Identities=24%  Similarity=0.388  Sum_probs=75.5

Q ss_pred             hcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeCCeee
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHSF  700 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~~~~~  700 (716)
                      ..+|....++|+|+||+|+.+..+ +++.+|||++++...-... +.+..+.|..++.-. +||.+++++..+.+.+..|
T Consensus       367 l~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~~d-~Ve~~~~EkrI~~la~~HPFL~~L~~~fQT~~~l~  445 (694)
T KOG0694|consen  367 LDDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQRD-EVESLMCEKRIFELANRHPFLVNLFSCFQTKEHLF  445 (694)
T ss_pred             ccceEEEEEeccCcCceEEEEEEcCCCcEEEEEEeeccceeccc-cHHHHHHHHHHHHHhccCCeEeecccccccCCeEE
Confidence            457899999999999999999765 5789999999986544332 456677787777666 6999999999999999999


Q ss_pred             EEEcccCCCCHHhH
Q 041300          701 LVYEFLERGSLAAI  714 (716)
Q Consensus       701 lv~Ey~~~GsL~~~  714 (716)
                      .||||+.||++..+
T Consensus       446 fvmey~~Ggdm~~~  459 (694)
T KOG0694|consen  446 FVMEYVAGGDLMHH  459 (694)
T ss_pred             EEEEecCCCcEEEE
Confidence            99999999996543

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=98.87  E-value=5.7e-09  Score=105.01  Aligned_cols=89  Identities=21%  Similarity=0.355  Sum_probs=75.1

Q ss_pred             CCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          625 DFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      +|...+.||+|+||.||++.. .+++.||+|++...... . ...+++.+|++++++++|||++++++++...+..++||
T Consensus         1 ~y~~~~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~~-~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~   78 (256)
T cd08218           1 KYVKVKKIGEGSFGKAILVKSKEDGKQYVIKEINISKMS-P-KEREESRKEVAVLSNMKHPNIVQYQESFEENGNLYIVM   78 (256)
T ss_pred             CceEEEEeccCCceEEEEEEEcCCCCEEEEEEEEhHhCC-h-HHHHHHHHHHHHHHhCCCCCeeeeEeeecCCCeEEEEE
Confidence            367788999999999999964 46889999998643221 1 13467899999999999999999999999999999999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      ||+++|+|.+++
T Consensus        79 e~~~~~~l~~~~   90 (256)
T cd08218          79 DYCEGGDLYKKI   90 (256)
T ss_pred             ecCCCCcHHHHH
Confidence            999999998875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=98.87  E-value=6.6e-09  Score=107.11  Aligned_cols=88  Identities=25%  Similarity=0.434  Sum_probs=76.0

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ..|...+.||+|+||.||+|.. .++..||+|.+.....    ...+.+.+|+.+++.++|+|++++++++..++..++|
T Consensus        19 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~----~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv   94 (297)
T cd06656          19 KKYTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQ----PKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVV   94 (297)
T ss_pred             hhceeeeeeccCCCeEEEEEEECCCCCEEEEEEEecCcc----chHHHHHHHHHHHHhCCCCCEeeEEEEEecCCEEEEe
Confidence            4688889999999999999964 5789999999865321    1345688999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      |||+++|+|.+++
T Consensus        95 ~e~~~~~~L~~~~  107 (297)
T cd06656          95 MEYLAGGSLTDVV  107 (297)
T ss_pred             ecccCCCCHHHHH
Confidence            9999999999875

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=98.86  E-value=8e-09  Score=103.87  Aligned_cols=89  Identities=20%  Similarity=0.345  Sum_probs=75.5

Q ss_pred             CCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          625 DFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      +|...+.||+|+||.||++.. .++..+|||.+.......  ...+.+.+|++++++++|||++++++.+..++..++||
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~--~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   78 (256)
T cd08220           1 KYEKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTK--DERLAAQNECQVLKLLSHPNIIEYYENFLEDKALMIVM   78 (256)
T ss_pred             CceEEEEecccCceEEEEEEEcCCCcEEEEEEEecccccc--HHHHHHHHHHHHHhhCCCCchhheeeeEecCCEEEEEE
Confidence            367788999999999999964 467899999987543221  13467999999999999999999999999889999999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      ||+++|+|.+++
T Consensus        79 e~~~~~~L~~~~   90 (256)
T cd08220          79 EYAPGGTLAEYI   90 (256)
T ss_pred             ecCCCCCHHHHH
Confidence            999999999886

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=98.86  E-value=5.7e-09  Score=107.63  Aligned_cols=89  Identities=28%  Similarity=0.507  Sum_probs=73.2

Q ss_pred             cCCcccccccCCCceEEEEEEcCC-CC--EEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeCCee
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELPS-GE--VVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHS  699 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~~-~~--~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~~~~  699 (716)
                      ++|...++||+|+||.||+|...+ +.  .+|+|.++...   .....+.|.+|++++.++ +||||+++++++...+..
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~---~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~   78 (297)
T cd05089           2 EDIKFEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFA---SENDHRDFAGELEVLCKLGHHPNIINLLGACENRGYL   78 (297)
T ss_pred             ccceeeeeecCCCcceEEEEEecCCCCcceeEEEEccccC---CHHHHHHHHHHHHHHHhhcCCCchhheEEEEccCCcc
Confidence            367888899999999999997643 33  47888876421   112346799999999999 799999999999998899


Q ss_pred             eEEEcccCCCCHHhHh
Q 041300          700 FLVYEFLERGSLAAIL  715 (716)
Q Consensus       700 ~lv~Ey~~~GsL~~~l  715 (716)
                      ++|+||+++|+|.+++
T Consensus        79 ~lv~e~~~~~~L~~~l   94 (297)
T cd05089          79 YIAIEYAPYGNLLDFL   94 (297)
T ss_pred             eEEEEecCCCcHHHHH
Confidence            9999999999999886

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=98.86  E-value=4.5e-09  Score=120.30  Aligned_cols=93  Identities=23%  Similarity=0.423  Sum_probs=75.9

Q ss_pred             HhhcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC--C
Q 041300          621 RETNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA--Q  697 (716)
Q Consensus       621 ~~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~--~  697 (716)
                      ....+|.....||+|+||+||++... .+..||+|.+.......  .....|.+|+.++.+++|||||++++++...  .
T Consensus        10 ~~l~~YeIl~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~e--~~~~~~~~EI~IL~~L~HPNIVrl~d~f~de~~~   87 (1021)
T PTZ00266         10 SRLNEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKE--REKSQLVIEVNVMRELKHKNIVRYIDRFLNKANQ   87 (1021)
T ss_pred             cccCCEEEEEEEecCCCeEEEEEEECCCCeEEEEEEEeccccCH--HHHHHHHHHHHHHHHcCCCCcCeEEEEEEecCCC
Confidence            34467889999999999999999654 57789999987533221  1346799999999999999999999988553  4


Q ss_pred             eeeEEEcccCCCCHHhHh
Q 041300          698 HSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       698 ~~~lv~Ey~~~GsL~~~l  715 (716)
                      ..|+||||+++|+|.++|
T Consensus        88 ~lyIVMEY~~gGSL~~lL  105 (1021)
T PTZ00266         88 KLYILMEFCDAGDLSRNI  105 (1021)
T ss_pred             EEEEEEeCCCCCcHHHHH
Confidence            689999999999999876

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=98.86  E-value=7.4e-09  Score=105.98  Aligned_cols=88  Identities=31%  Similarity=0.445  Sum_probs=72.6

Q ss_pred             CCcccccccCCCceEEEEEEc-----CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC--C
Q 041300          625 DFDAEYCIGNGGHGSVYRAEL-----PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA--Q  697 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~-----~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~--~  697 (716)
                      -|...+.||+|+||.||.+.+     .++..||+|.+.....   ......|.+|++++++++|||++++++++...  .
T Consensus         5 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   81 (284)
T cd05079           5 FLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESG---GNHIADLKKEIEILRNLYHENIVKYKGICTEDGGN   81 (284)
T ss_pred             hhhhceecCCCCceeEEEEEEccCCCCccceEEEEEcCcccc---HHHHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCC
Confidence            456778899999999999974     2467899999875321   12346799999999999999999999999775  5


Q ss_pred             eeeEEEcccCCCCHHhHh
Q 041300          698 HSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       698 ~~~lv~Ey~~~GsL~~~l  715 (716)
                      ..++||||+++|+|.+++
T Consensus        82 ~~~lv~e~~~g~~L~~~l   99 (284)
T cd05079          82 GIKLIMEFLPSGSLKEYL   99 (284)
T ss_pred             ceEEEEEccCCCCHHHHH
Confidence            679999999999999876

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=98.86  E-value=4.8e-09  Score=108.58  Aligned_cols=89  Identities=25%  Similarity=0.475  Sum_probs=73.9

Q ss_pred             cCCcccccccCCCceEEEEEEcC--------CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP--------SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCS  694 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~--------~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~  694 (716)
                      .+|...+.||+|+||.||++...        ++..||+|.+....   .....+++.+|+++++.+ +||||+++++++.
T Consensus        15 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~---~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~   91 (304)
T cd05101          15 DKLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDA---TEKDLSDLVSEMEMMKMIGKHKNIINLLGACT   91 (304)
T ss_pred             HHeeecceeeccCCceEEEEEEeccCCCCCCcceeEEeeeccccc---chHHHHHHHHHHHHHHhhccCCCchheeEEEe
Confidence            45778889999999999999631        24579999986421   112346789999999999 8999999999999


Q ss_pred             eCCeeeEEEcccCCCCHHhHh
Q 041300          695 HAQHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       695 ~~~~~~lv~Ey~~~GsL~~~l  715 (716)
                      .....|+||||+++|+|.+++
T Consensus        92 ~~~~~~lv~e~~~~~~L~~~l  112 (304)
T cd05101          92 QDGPLYVIVEYASKGNLREYL  112 (304)
T ss_pred             cCCceEEEEecCCCCcHHHHH
Confidence            999999999999999999886

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=98.86  E-value=7.7e-09  Score=104.00  Aligned_cols=88  Identities=20%  Similarity=0.347  Sum_probs=74.3

Q ss_pred             CCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          625 DFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      +|...+.||+|+||.||++... ++..+|+|.+.....  . ...+.+.+|++++++++|+|++++++++.+++..++||
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~--~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   77 (255)
T cd08219           1 QYNVLRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKS--S-SAVEDSRKEAVLLAKMKHPNIVAFKESFEADGHLYIVM   77 (255)
T ss_pred             CceEEEEeeccCCeEEEEEEEcCCCceEEEEEEEcCcc--h-HHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEE
Confidence            3667789999999999999654 578899999864321  1 13467889999999999999999999999999999999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      ||+++|+|.+++
T Consensus        78 e~~~~~~l~~~~   89 (255)
T cd08219          78 EYCDGGDLMQKI   89 (255)
T ss_pred             eeCCCCcHHHHH
Confidence            999999998875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=98.86  E-value=4.2e-09  Score=107.89  Aligned_cols=89  Identities=26%  Similarity=0.473  Sum_probs=75.0

Q ss_pred             CCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          625 DFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      +|...+.||+|+||.||+|... .++.||+|++.......  ...+.+.+|++++++++|||++++++++..++..++||
T Consensus         2 ~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   79 (286)
T cd07846           2 KYENLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDK--MVKKIAMREIRMLKQLRHENLVNLIEVFRRKKRLYLVF   79 (286)
T ss_pred             ceeEeeeeccCCCeEEEEEEECCCCCEEEEEeHhhccCcc--hhhHHHHHHHHHHHhcCCcchhhHHHhcccCCeEEEEE
Confidence            5777889999999999999865 48899999987532221  13456889999999999999999999999999999999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      ||++++.|.++.
T Consensus        80 e~~~~~~l~~~~   91 (286)
T cd07846          80 EFVDHTVLDDLE   91 (286)
T ss_pred             ecCCccHHHHHH
Confidence            999999887764

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=98.86  E-value=5.7e-09  Score=107.18  Aligned_cols=90  Identities=21%  Similarity=0.306  Sum_probs=74.0

Q ss_pred             CcccccccCCCceEEEEEEc----CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeCCeee
Q 041300          626 FDAEYCIGNGGHGSVYRAEL----PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHSF  700 (716)
Q Consensus       626 ~~~~~~ig~g~~g~v~~~~~----~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~~~~~  700 (716)
                      |...+.||+|+||.||.+..    .+|..||+|++............+.+.+|+.++.++ +|+||+++++++..+...+
T Consensus         2 y~~~~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~   81 (290)
T cd05613           2 FELLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTDTKLH   81 (290)
T ss_pred             ceeeeeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhceeeEeecCCeEE
Confidence            66778899999999999964    368899999987532222212345688999999999 5999999999999888999


Q ss_pred             EEEcccCCCCHHhHh
Q 041300          701 LVYEFLERGSLAAIL  715 (716)
Q Consensus       701 lv~Ey~~~GsL~~~l  715 (716)
                      +||||+++|+|.+++
T Consensus        82 lv~e~~~~~~L~~~l   96 (290)
T cd05613          82 LILDYINGGELFTHL   96 (290)
T ss_pred             EEEecCCCCcHHHHH
Confidence            999999999999886

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=98.86  E-value=6.8e-09  Score=105.53  Aligned_cols=88  Identities=28%  Similarity=0.540  Sum_probs=70.6

Q ss_pred             CcccccccCCCceEEEEEEcCC----CCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCe---
Q 041300          626 FDAEYCIGNGGHGSVYRAELPS----GEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQH---  698 (716)
Q Consensus       626 ~~~~~~ig~g~~g~v~~~~~~~----~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~---  698 (716)
                      |...++||+|+||.||+|....    +..||||+++.... . .....++.+|++.+++++|||++++++++...+.   
T Consensus         1 ~~~~~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~-~-~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~   78 (273)
T cd05035           1 LKLGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIH-T-YSEIEEFLSEAACMKDFDHPNVMKLIGVCFEASSLQK   78 (273)
T ss_pred             CccccccCcCCCceEEEEEEecCCCCcceEEEEEeccCcC-C-HHHHHHHHHHHHHHHhCCCCCeeeEEeeeccCCcccc
Confidence            4567789999999999997532    36799999875322 1 1234679999999999999999999999876554   


Q ss_pred             ---eeEEEcccCCCCHHhHh
Q 041300          699 ---SFLVYEFLERGSLAAIL  715 (716)
Q Consensus       699 ---~~lv~Ey~~~GsL~~~l  715 (716)
                         .++||||+++|+|.+++
T Consensus        79 ~~~~~~v~e~~~~~~l~~~l   98 (273)
T cd05035          79 IPKPMVILPFMKHGDLHSFL   98 (273)
T ss_pred             CcccEEEEeccCCCCHHHHH
Confidence               79999999999998775

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=98.86  E-value=6.7e-09  Score=107.00  Aligned_cols=89  Identities=26%  Similarity=0.455  Sum_probs=74.8

Q ss_pred             cCCcccccccCCCceEEEEEEcCC-----------------CCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCc
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELPS-----------------GEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNI  686 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~~-----------------~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~ni  686 (716)
                      .+|...+.||+|+||.||++...+                 +..||+|++.....   ....++|.+|++++++++|||+
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~---~~~~~~~~~e~~~l~~l~~~~i   81 (296)
T cd05051           5 QPLNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDAS---DNAREDFLKEVKILSRLSDPNI   81 (296)
T ss_pred             hhCcccccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccC---HHHHHHHHHHHHHHHhcCCCCE
Confidence            467888999999999999986432                 24689999875321   1245679999999999999999


Q ss_pred             cccceEEEeCCeeeEEEcccCCCCHHhHh
Q 041300          687 VKFYGFCSHAQHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       687 v~l~g~~~~~~~~~lv~Ey~~~GsL~~~l  715 (716)
                      +++++++..++..++||||+++|+|.+++
T Consensus        82 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~l  110 (296)
T cd05051          82 ARLLGVCTVDPPLCMIMEYMENGDLNQFL  110 (296)
T ss_pred             eEEEEEEecCCCcEEEEecCCCCCHHHHH
Confidence            99999999989999999999999999886

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=98.86  E-value=5.8e-09  Score=109.03  Aligned_cols=85  Identities=22%  Similarity=0.330  Sum_probs=66.2

Q ss_pred             ccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHH-HHhcCCCCCccccceEEEeCCeeeEEEcccC
Q 041300          630 YCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQ-ALTEIRHRNIVKFYGFCSHAQHSFLVYEFLE  707 (716)
Q Consensus       630 ~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~-~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~  707 (716)
                      +.||+|+||+||++... ++..||+|++......... ....+.+|.. +++.++|||||++++++...+..|+||||++
T Consensus         1 ~~lg~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~-~~~~~~~e~~~~l~~~~h~~Iv~~~~~~~~~~~~~lv~e~~~   79 (325)
T cd05602           1 KVIGKGSFGKVLLARHKAEEKFYAVKVLQKKAILKKK-EEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYIN   79 (325)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHHhhh-HHHHHHHHHHHHHHhCCCCCCCceeEEEEcCCeEEEEEeCCC
Confidence            36899999999999654 5788999998753211111 2234555544 5678999999999999999999999999999


Q ss_pred             CCCHHhHh
Q 041300          708 RGSLAAIL  715 (716)
Q Consensus       708 ~GsL~~~l  715 (716)
                      +|+|.+++
T Consensus        80 ~~~L~~~~   87 (325)
T cd05602          80 GGELFYHL   87 (325)
T ss_pred             CCcHHHHH
Confidence            99998876

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=98.86  E-value=2.8e-09  Score=110.01  Aligned_cols=90  Identities=20%  Similarity=0.389  Sum_probs=75.0

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCe-eeE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQH-SFL  701 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~-~~l  701 (716)
                      ++|...+++|+|+||.++..+.+ ++..+++|.+......+.  .++.-.+|+.++++++|||||.+.+.+..++. .+|
T Consensus         4 ~~Ye~~~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~~t~~--~r~~A~~E~~lis~~~hP~iv~y~ds~~~~~~~l~I   81 (426)
T KOG0589|consen    4 DNYEVLRQVGRGAFGSALLVRHKSDDKLYVLKKINLEKLTEP--ERRSAIQEMDLLSKLLHPNIVEYKDSFEEDGQLLCI   81 (426)
T ss_pred             chhhhhhhcCccccchhhhhhhccCCceEEEEEEeccccCch--hhHHHHHHHHHHHhccCCCeeeeccchhcCCceEEE
Confidence            45777889999999999988543 567899999976543322  34467899999999999999999999988888 899


Q ss_pred             EEcccCCCCHHhHh
Q 041300          702 VYEFLERGSLAAIL  715 (716)
Q Consensus       702 v~Ey~~~GsL~~~l  715 (716)
                      |||||+||++.+.|
T Consensus        82 vm~Y~eGg~l~~~i   95 (426)
T KOG0589|consen   82 VMEYCEGGDLAQLI   95 (426)
T ss_pred             EEeecCCCCHHHHH
Confidence            99999999999876

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=98.86  E-value=5.7e-09  Score=106.35  Aligned_cols=89  Identities=25%  Similarity=0.461  Sum_probs=74.7

Q ss_pred             cCCcccccccCCCceEEEEEEcC------CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP------SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ  697 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~------~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~  697 (716)
                      .+|...+.||+|+||.||+|...      .+..||+|.+....   ......+|.+|++++..++|||++++++++....
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~---~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~   82 (277)
T cd05032           6 EKITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENA---SMRERIEFLNEASVMKEFNCHHVVRLLGVVSTGQ   82 (277)
T ss_pred             HHeeEEeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCcc---CHHHHHHHHHHHHHHHhCCCCceeEEEEEEcCCC
Confidence            45777889999999999999653      23689999986532   1123467899999999999999999999999999


Q ss_pred             eeeEEEcccCCCCHHhHh
Q 041300          698 HSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       698 ~~~lv~Ey~~~GsL~~~l  715 (716)
                      ..++||||+++|+|.+++
T Consensus        83 ~~~~v~e~~~~~~L~~~l  100 (277)
T cd05032          83 PTLVVMELMAKGDLKSYL  100 (277)
T ss_pred             CcEEEEecCCCCCHHHHH
Confidence            999999999999999876

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=98.85  E-value=4.5e-09  Score=108.11  Aligned_cols=91  Identities=25%  Similarity=0.512  Sum_probs=75.2

Q ss_pred             hhcCCcccccccCCCceEEEEEEcC------CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEE
Q 041300          622 ETNDFDAEYCIGNGGHGSVYRAELP------SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCS  694 (716)
Q Consensus       622 ~~~~~~~~~~ig~g~~g~v~~~~~~------~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~  694 (716)
                      ...+|...+.||+|+||.||++...      ....||+|.+.....  . ....++.+|++++.++ +|+||+++++++.
T Consensus        10 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~--~-~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~   86 (293)
T cd05053          10 PRDRLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDAT--E-KDLSDLVSEMEMMKMIGKHKNIINLLGVCT   86 (293)
T ss_pred             CHhHeEEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCCC--H-HHHHHHHHHHHHHHhhcCCCCeeeEEEEEc
Confidence            3456788889999999999999653      235789999875321  1 1345689999999999 8999999999999


Q ss_pred             eCCeeeEEEcccCCCCHHhHh
Q 041300          695 HAQHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       695 ~~~~~~lv~Ey~~~GsL~~~l  715 (716)
                      .++..++||||+++|+|.+++
T Consensus        87 ~~~~~~li~e~~~~~~L~~~l  107 (293)
T cd05053          87 QEGPLYVVVEYAAHGNLRDFL  107 (293)
T ss_pred             CCCCeEEEEEeCCCCcHHHHH
Confidence            999999999999999999886

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=98.85  E-value=7.5e-09  Score=105.87  Aligned_cols=88  Identities=32%  Similarity=0.493  Sum_probs=73.6

Q ss_pred             CCcccccccCCCceEEEEEEcC-----CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEe--CC
Q 041300          625 DFDAEYCIGNGGHGSVYRAELP-----SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSH--AQ  697 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~~-----~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~--~~  697 (716)
                      .|...+.||+|+||.||++.+.     .+..||||++......   ...++|.+|++++++++|+|++++++++..  +.
T Consensus         5 ~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~---~~~~~~~~ei~~l~~l~~~~i~~~~~~~~~~~~~   81 (284)
T cd05038           5 HLKFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEE---QHRSDFEREIEILRTLDHENIVKYKGVCEKPGGR   81 (284)
T ss_pred             hchhheeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccch---HHHHHHHHHHHHHHhCCCCChheEEeeeecCCCC
Confidence            4666788999999999999754     3678999999753221   135689999999999999999999999977  55


Q ss_pred             eeeEEEcccCCCCHHhHh
Q 041300          698 HSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       698 ~~~lv~Ey~~~GsL~~~l  715 (716)
                      ..++||||+++|+|.+++
T Consensus        82 ~~~lv~e~~~~~~l~~~l   99 (284)
T cd05038          82 SLRLIMEYLPSGSLRDYL   99 (284)
T ss_pred             ceEEEEecCCCCCHHHHH
Confidence            789999999999999886

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=98.85  E-value=6.2e-09  Score=108.28  Aligned_cols=85  Identities=28%  Similarity=0.404  Sum_probs=68.3

Q ss_pred             ccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeCCeeeEEEcccC
Q 041300          630 YCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHSFLVYEFLE  707 (716)
Q Consensus       630 ~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~~~~~lv~Ey~~  707 (716)
                      ++||+|+||.||+|+.. ++..||||++++...... .....+..|+.++... +||+|+++++++.+.+..|+||||++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~-~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~   79 (316)
T cd05620           1 KVLGKGSFGKVLLAELKGKGEYFAVKALKKDVVLID-DDVECTMVEKRVLALAWENPFLTHLYCTFQTKEHLFFVMEFLN   79 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhc-chHHHHHHHHHHHHhccCCCCccCeeEEEEeCCEEEEEECCCC
Confidence            36899999999999754 588999999975321111 1334567788887754 89999999999999999999999999


Q ss_pred             CCCHHhHh
Q 041300          708 RGSLAAIL  715 (716)
Q Consensus       708 ~GsL~~~l  715 (716)
                      +|+|.+++
T Consensus        80 ~g~L~~~i   87 (316)
T cd05620          80 GGDLMFHI   87 (316)
T ss_pred             CCcHHHHH
Confidence            99998775

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=98.85  E-value=7.2e-09  Score=105.66  Aligned_cols=83  Identities=23%  Similarity=0.349  Sum_probs=69.0

Q ss_pred             ccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEcccCCCC
Q 041300          632 IGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGS  710 (716)
Q Consensus       632 ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~Gs  710 (716)
                      ||+|+||+||++.. .+|+.||+|.+........ .....+.+|++++++++|||++++++++...+..++||||+++|+
T Consensus         1 lg~g~~g~vy~~~~~~~~~~~~ik~~~~~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~   79 (277)
T cd05577           1 LGKGGFGEVCACQVKATGKMYACKKLDKKRLKKR-KGEQMALNEKKILEKVSSRFIVSLAYAFETKDDLCLVMTLMNGGD   79 (277)
T ss_pred             CCCCCceeEEEEEEcCCCcEEEEEEEehhhhhhh-hhhHHHHHHHHHHHhCCCCCEeeeeeEEecCCeEEEEEecCCCCc
Confidence            69999999999964 4688999999865321111 133457889999999999999999999999999999999999999


Q ss_pred             HHhHh
Q 041300          711 LAAIL  715 (716)
Q Consensus       711 L~~~l  715 (716)
                      |.+++
T Consensus        80 L~~~l   84 (277)
T cd05577          80 LKYHI   84 (277)
T ss_pred             HHHHH
Confidence            99876

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=98.85  E-value=8.7e-09  Score=107.30  Aligned_cols=90  Identities=23%  Similarity=0.365  Sum_probs=76.6

Q ss_pred             CCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          625 DFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      +|...+.||+|+||.||++... ++..||+|.+........ ...+.+.+|++++..++|+||+++++++...+..++||
T Consensus         2 ~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~   80 (316)
T cd05574           2 HFKKIKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKR-NKVKRVLTEQEILATLDHPFLPTLYASFQTETYLCLVM   80 (316)
T ss_pred             ceEEeeeecCCccEEEEEEEEcCCCcEEEEEEEeccccchH-HHHHHHHHHHHHHHhCCCCCchhheeeeecCCEEEEEE
Confidence            5777889999999999999754 488999999976432211 13467899999999999999999999999999999999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      ||+++|+|.+++
T Consensus        81 e~~~~~~L~~~~   92 (316)
T cd05574          81 DYCPGGELFRLL   92 (316)
T ss_pred             EecCCCCHHHHH
Confidence            999999999876

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=98.85  E-value=9.4e-09  Score=104.05  Aligned_cols=88  Identities=32%  Similarity=0.446  Sum_probs=76.0

Q ss_pred             CCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          625 DFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      +|...+.||.|+||.||+|... ++..||+|++.......   ..+.+.+|++.++.++|+|++++++.+..++..++||
T Consensus         2 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~---~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~   78 (267)
T cd06610           2 DYELIEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQT---SVDELRKEVQAMSQCNHPNVVKYYTSFVVGDELWLVM   78 (267)
T ss_pred             cceeeeeecCCCCeEEEEEEEcCCCcEEEEEEeccCCcch---HHHHHHHHHHHHHhcCCCCEEEEEEEEeeCCEEEEEE
Confidence            5788899999999999999754 67899999987532211   3467999999999999999999999999999999999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      ||+++|+|.+++
T Consensus        79 e~~~~~~l~~~~   90 (267)
T cd06610          79 PYLSGGSLLDIM   90 (267)
T ss_pred             eccCCCcHHHHH
Confidence            999999999876

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=98.85  E-value=8.6e-09  Score=104.88  Aligned_cols=89  Identities=28%  Similarity=0.471  Sum_probs=75.6

Q ss_pred             CCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          625 DFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      +|...+.||.|+||.||+|... ++..||+|.+.....  . .....+.+|++++++++|+|++++++++.++...++|+
T Consensus         2 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~--~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   78 (274)
T cd06609           2 LFTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEA--E-DEIEDIQQEIQFLSQCRSPYITKYYGSFLKGSKLWIIM   78 (274)
T ss_pred             hhhhhhhhcCCCCeEEEEEEECCCCeEEEEEEeecccc--c-hHHHHHHHHHHHHHHcCCCCeeeeeEEEEECCeEEEEE
Confidence            4677788999999999999754 588999999865321  1 13467899999999999999999999999999999999


Q ss_pred             cccCCCCHHhHhC
Q 041300          704 EFLERGSLAAILS  716 (716)
Q Consensus       704 Ey~~~GsL~~~l~  716 (716)
                      ||+++|+|.++++
T Consensus        79 e~~~~~~L~~~~~   91 (274)
T cd06609          79 EYCGGGSCLDLLK   91 (274)
T ss_pred             EeeCCCcHHHHHh
Confidence            9999999998863

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=98.85  E-value=8.1e-09  Score=104.84  Aligned_cols=83  Identities=29%  Similarity=0.566  Sum_probs=68.4

Q ss_pred             ccccCCCceEEEEEEcCC-CC--EEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeCCeeeEEEcc
Q 041300          630 YCIGNGGHGSVYRAELPS-GE--VVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHSFLVYEF  705 (716)
Q Consensus       630 ~~ig~g~~g~v~~~~~~~-~~--~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~~~~~lv~Ey  705 (716)
                      ++||+|+||.||+|...+ +.  .+|+|.+....   .....+.|.+|+++++++ +|||++++++++...+..++||||
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~~k~~~~~~---~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~   77 (270)
T cd05047           1 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYA---SKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEY   77 (270)
T ss_pred             CcCCCCCCceEEEEEEcCCCCeeEEEEEEccccC---CHHHHHHHHHHHHHHHhhccCCCeeeEEEEEecCCCceEEEEe
Confidence            368999999999997643 43  46888876421   112346789999999999 899999999999999999999999


Q ss_pred             cCCCCHHhHh
Q 041300          706 LERGSLAAIL  715 (716)
Q Consensus       706 ~~~GsL~~~l  715 (716)
                      +++|+|.+++
T Consensus        78 ~~~~~L~~~i   87 (270)
T cd05047          78 APHGNLLDFL   87 (270)
T ss_pred             CCCCcHHHHH
Confidence            9999999886

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=98.85  E-value=8e-09  Score=106.24  Aligned_cols=88  Identities=27%  Similarity=0.463  Sum_probs=75.2

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ..|...+.||+|+||.||++.. .++..||+|.+....   . ...+.+.+|+.++++++|||++++++++...+..|+|
T Consensus        19 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~---~-~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv   94 (293)
T cd06647          19 KKYTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQ---Q-PKKELIINEILVMRENKHPNIVNYLDSYLVGDELWVV   94 (293)
T ss_pred             hhceeeeEecCCCCeEEEEEEEcCCCCEEEEEEecccc---c-hHHHHHHHHHHHHhhcCCCCeeehhheeeeCCcEEEE
Confidence            4677788999999999999964 467889999986421   1 1346789999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      +||+++|+|.+++
T Consensus        95 ~e~~~~~~L~~~~  107 (293)
T cd06647          95 MEYLAGGSLTDVV  107 (293)
T ss_pred             EecCCCCcHHHHH
Confidence            9999999999876

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=98.85  E-value=1.1e-08  Score=103.59  Aligned_cols=92  Identities=23%  Similarity=0.385  Sum_probs=73.5

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCc-cchhhHHHHHHHHHHHhcCCCCCccccceEEEeC--Cee
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPC-DQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA--QHS  699 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~-~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~--~~~  699 (716)
                      .+|...++||+|+||.||+|.. .++..||||.+...... ......+.+.+|++++++++||||+++++++.++  ...
T Consensus         2 ~~~~~~~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (265)
T cd06652           2 TNWRLGKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGCLRDPMERTL   81 (265)
T ss_pred             CcceEeeEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCeeeEEeEeccCCCceE
Confidence            3678889999999999999965 45889999988542211 1111345788999999999999999999988664  457


Q ss_pred             eEEEcccCCCCHHhHh
Q 041300          700 FLVYEFLERGSLAAIL  715 (716)
Q Consensus       700 ~lv~Ey~~~GsL~~~l  715 (716)
                      ++||||+++|+|.+++
T Consensus        82 ~~v~e~~~~~~L~~~l   97 (265)
T cd06652          82 SIFMEHMPGGSIKDQL   97 (265)
T ss_pred             EEEEEecCCCcHHHHH
Confidence            8999999999999876

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=98.85  E-value=6.4e-09  Score=104.67  Aligned_cols=89  Identities=24%  Similarity=0.402  Sum_probs=74.8

Q ss_pred             CCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          625 DFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      +|...+.||+|+||.||+|... +|..||+|.+...... . ...+.+.+|++++++++|+|++++++++...+..++|+
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~-~-~~~~~~~~E~~~l~~~~h~~i~~~~~~~~~~~~~~lv~   78 (257)
T cd08225           1 RYEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMP-V-KEKEASKKEVILLAKMKHPNIVTFFASFQENGRLFIVM   78 (257)
T ss_pred             CceEEEEecCCCcceEEEEEEcCCCceEEEEEeeHhhcc-c-hhhHHHHHHHHHHHhCCCCChhhhhheeccCCeEEEEE
Confidence            3667789999999999999764 5788999998653211 1 13456889999999999999999999999999999999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      ||+++++|.+++
T Consensus        79 e~~~~~~L~~~~   90 (257)
T cd08225          79 EYCDGGDLMKRI   90 (257)
T ss_pred             ecCCCCcHHHHH
Confidence            999999999876

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=98.85  E-value=7.6e-09  Score=105.69  Aligned_cols=88  Identities=31%  Similarity=0.649  Sum_probs=74.0

Q ss_pred             cCCcccccccCCCceEEEEEEcC------CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP------SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ  697 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~------~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~  697 (716)
                      .++....+||+|+||.||++...      ++..+|+|.+....   . .....|.+|++++++++|+||+++++++...+
T Consensus         5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~---~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   80 (280)
T cd05092           5 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEAS---E-SARQDFQREAELLTVLQHQHIVRFYGVCTEGR   80 (280)
T ss_pred             HhceeccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCC---H-HHHHHHHHHHHHHhcCCCCCCceEEEEEecCC
Confidence            35677889999999999999632      35578999886531   1 24567999999999999999999999999999


Q ss_pred             eeeEEEcccCCCCHHhHh
Q 041300          698 HSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       698 ~~~lv~Ey~~~GsL~~~l  715 (716)
                      ..++||||+++|+|.+++
T Consensus        81 ~~~lv~e~~~~~~L~~~i   98 (280)
T cd05092          81 PLLMVFEYMRHGDLNRFL   98 (280)
T ss_pred             ceEEEEecCCCCCHHHHH
Confidence            999999999999999876

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=98.84  E-value=7.9e-09  Score=104.39  Aligned_cols=81  Identities=25%  Similarity=0.439  Sum_probs=67.1

Q ss_pred             cccCCCceEEEEEEcCC-------------CCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC
Q 041300          631 CIGNGGHGSVYRAELPS-------------GEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ  697 (716)
Q Consensus       631 ~ig~g~~g~v~~~~~~~-------------~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~  697 (716)
                      .||+|+||.||+|.+..             ...||+|.+....    ......|..|+.+++.++|||||++++++....
T Consensus         2 ~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~----~~~~~~~~~~~~~l~~l~hp~iv~~~~~~~~~~   77 (262)
T cd05077           2 HLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPSH----RDISLAFFETASMMRQVSHKHIVLLYGVCVRDV   77 (262)
T ss_pred             ccccCCcceEeeeecccCCCccccccchhhceeEEEeecChhh----hhHHHHHHHHHHHHHhCCCCCEeeEEEEEecCC
Confidence            58999999999997532             2258899876521    113457889999999999999999999999988


Q ss_pred             eeeEEEcccCCCCHHhHh
Q 041300          698 HSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       698 ~~~lv~Ey~~~GsL~~~l  715 (716)
                      ..++||||+++|+|..++
T Consensus        78 ~~~lv~e~~~~~~l~~~~   95 (262)
T cd05077          78 ENIMVEEFVEFGPLDLFM   95 (262)
T ss_pred             CCEEEEecccCCCHHHHH
Confidence            999999999999998775

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=98.84  E-value=8.2e-09  Score=103.48  Aligned_cols=83  Identities=37%  Similarity=0.612  Sum_probs=72.5

Q ss_pred             ccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEcccCCC
Q 041300          630 YCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERG  709 (716)
Q Consensus       630 ~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~G  709 (716)
                      ++||+|+||.||++...+++.||+|.+......   ....+|.+|++++++++|+||+++++++.+....++||||++++
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~v~~K~~~~~~~~---~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~   77 (251)
T cd05041           1 EKIGKGNFGDVYKGVLKGNTEVAVKTCRSTLPP---DLKRKFLQEAEILKQYDHPNIVKLIGVCVQKQPIYIVMELVPGG   77 (251)
T ss_pred             CccccCCCceEEEEEEeCCCcEEEEeccccCCH---HHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCCeEEEEEcCCCC
Confidence            368999999999998766899999998764322   24567999999999999999999999999999999999999999


Q ss_pred             CHHhHh
Q 041300          710 SLAAIL  715 (716)
Q Consensus       710 sL~~~l  715 (716)
                      +|.+++
T Consensus        78 ~l~~~l   83 (251)
T cd05041          78 SLLTFL   83 (251)
T ss_pred             cHHHHH
Confidence            999876

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=98.84  E-value=5.9e-09  Score=108.43  Aligned_cols=89  Identities=26%  Similarity=0.487  Sum_probs=73.6

Q ss_pred             cCCcccccccCCCceEEEEEEcC--------CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP--------SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCS  694 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~--------~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~  694 (716)
                      .+|...+.||+|+||.||+++..        ....||+|++.....   .....++.+|++++.++ +|||||+++++|.
T Consensus        12 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~---~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~   88 (314)
T cd05099          12 DRLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNAT---DKDLADLISEMELMKLIGKHKNIINLLGVCT   88 (314)
T ss_pred             HHeeeeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCC---hHHHHHHHHHHHHHHhccCCCCeeeEEEEEc
Confidence            46778899999999999999531        245789999875321   12346789999999999 6999999999999


Q ss_pred             eCCeeeEEEcccCCCCHHhHh
Q 041300          695 HAQHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       695 ~~~~~~lv~Ey~~~GsL~~~l  715 (716)
                      ..+..++||||+++|+|.+++
T Consensus        89 ~~~~~~lv~e~~~~g~L~~~i  109 (314)
T cd05099          89 QEGPLYVIVEYAAKGNLREFL  109 (314)
T ss_pred             cCCceEEEEecCCCCcHHHHH
Confidence            888999999999999999886

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=98.84  E-value=7.8e-09  Score=104.32  Aligned_cols=85  Identities=27%  Similarity=0.497  Sum_probs=72.0

Q ss_pred             CCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEc
Q 041300          625 DFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYE  704 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~E  704 (716)
                      .|.....||+|+||.||+|....+..||+|.+.....     ..+.|.+|+.++++++|+|++++++++. .+..++|||
T Consensus         7 ~~~~~~~ig~g~~~~v~~~~~~~~~~~~lK~~~~~~~-----~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e   80 (260)
T cd05069           7 SLRLDVKLGQGCFGEVWMGTWNGTTKVAIKTLKPGTM-----MPEAFLQEAQIMKKLRHDKLVPLYAVVS-EEPIYIVTE   80 (260)
T ss_pred             HeeeeeeecCcCCCeEEEEEEcCCceEEEEEcccCCc-----cHHHHHHHHHHHHhCCCCCeeeEEEEEc-CCCcEEEEE
Confidence            4777788999999999999877777899998865321     3356899999999999999999998874 566899999


Q ss_pred             ccCCCCHHhHh
Q 041300          705 FLERGSLAAIL  715 (716)
Q Consensus       705 y~~~GsL~~~l  715 (716)
                      |+++|+|.+++
T Consensus        81 ~~~~~~L~~~~   91 (260)
T cd05069          81 FMGKGSLLDFL   91 (260)
T ss_pred             cCCCCCHHHHH
Confidence            99999999886

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=98.84  E-value=8.3e-09  Score=103.90  Aligned_cols=80  Identities=25%  Similarity=0.444  Sum_probs=66.1

Q ss_pred             ccCCCceEEEEEEcC---CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEcccCC
Q 041300          632 IGNGGHGSVYRAELP---SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLER  708 (716)
Q Consensus       632 ig~g~~g~v~~~~~~---~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~  708 (716)
                      ||+|+||.||+|.+.   .+..||||++....   .....++|.+|++++++++||||++++++|. .+..++||||+++
T Consensus         3 ig~G~~g~v~~~~~~~~~~~~~vavk~~~~~~---~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~-~~~~~lv~e~~~~   78 (257)
T cd05115           3 LGSGNFGCVKKGVYKMRKKQIDVAIKVLKNEN---EKSVRDEMMREAEIMHQLDNPYIVRMIGVCE-AEALMLVMEMASG   78 (257)
T ss_pred             cCCCCcccEEEEEEecCCCceeEEEEEccccc---ChHHHHHHHHHHHHHHhcCCCCeEEEEEEEc-CCCeEEEEEeCCC
Confidence            899999999999653   35579999987532   1223467999999999999999999999885 4578999999999


Q ss_pred             CCHHhHh
Q 041300          709 GSLAAIL  715 (716)
Q Consensus       709 GsL~~~l  715 (716)
                      |+|.+++
T Consensus        79 ~~L~~~l   85 (257)
T cd05115          79 GPLNKFL   85 (257)
T ss_pred             CCHHHHH
Confidence            9999876

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=98.84  E-value=1.1e-08  Score=105.37  Aligned_cols=88  Identities=24%  Similarity=0.422  Sum_probs=75.6

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ..|...+.||+|+||.||+|.. .++..||+|.+......    ..+.+.+|+.+++.++|+|++++++++..+...++|
T Consensus        20 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~----~~~~~~~e~~~l~~~~h~~v~~~~~~~~~~~~~~lv   95 (296)
T cd06654          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQP----KKELIINEILVMRENKNPNIVNYLDSYLVGDELWVV   95 (296)
T ss_pred             cceeeEEEecCCCCeEEEEEEECCCCcEEEEEEEecCCcc----hHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEe
Confidence            4677788899999999999964 46889999998753211    346688999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      |||+++|+|.+++
T Consensus        96 ~e~~~~~~L~~~~  108 (296)
T cd06654          96 MEYLAGGSLTDVV  108 (296)
T ss_pred             ecccCCCCHHHHH
Confidence            9999999999876

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.83  E-value=1.8e-09  Score=81.45  Aligned_cols=59  Identities=25%  Similarity=0.352  Sum_probs=31.5

Q ss_pred             CCCEEECcCCcCcccCCccccCCCCCCEEEcccccCccCCCccccCCCCCceeeccccc
Q 041300          101 KLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNH  159 (716)
Q Consensus       101 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  159 (716)
                      +|++|++++|+++...+..|..+++|++|++++|.++...+..|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            45555555555554444455555555555555555554444455555555555555554

...

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=98.83  E-value=1.2e-08  Score=104.70  Aligned_cols=88  Identities=27%  Similarity=0.371  Sum_probs=72.7

Q ss_pred             CCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC--CeeeE
Q 041300          625 DFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA--QHSFL  701 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~--~~~~l  701 (716)
                      +|...+.||.|++|.||++... +++.+|+|.+.....   .....++.+|++++++++||||++++++|...  +..++
T Consensus         2 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~---~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~l   78 (287)
T cd06621           2 KIVELSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPN---PDLQKQILRELEINKSCKSPYIVKYYGAFLDESSSSIGI   78 (287)
T ss_pred             ceEEEEEeccCCceEEEEEEECCCCeEEEEEEEecCCc---hHHHHHHHHHHHHHHhCCCCCeeeeeeEEEccCCCeEEE
Confidence            5777889999999999999764 578899999875321   12346799999999999999999999998654  36799


Q ss_pred             EEcccCCCCHHhHh
Q 041300          702 VYEFLERGSLAAIL  715 (716)
Q Consensus       702 v~Ey~~~GsL~~~l  715 (716)
                      ||||+++|+|.+++
T Consensus        79 v~e~~~~~~L~~~l   92 (287)
T cd06621          79 AMEYCEGGSLDSIY   92 (287)
T ss_pred             EEEecCCCCHHHHH
Confidence            99999999998764

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=98.83  E-value=1e-08  Score=103.56  Aligned_cols=83  Identities=25%  Similarity=0.368  Sum_probs=70.8

Q ss_pred             ccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEcccCCCC
Q 041300          632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGS  710 (716)
Q Consensus       632 ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~Gs  710 (716)
                      ||.|+||.||++... ++..||+|++......... ..+.+.+|++++++++|||++++++++.+++..++|+||+++|+
T Consensus         1 lg~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   79 (262)
T cd05572           1 LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVETG-QQEHIFSEKEILEECNHPFIVKLYRTFKDKKYIYMLMEYCLGGE   79 (262)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEEehhcchhhh-HHHHHHHHHHHHHhCCCCCEeeeeeeEEcCCccEEEEecCCCCc
Confidence            699999999999764 4889999998754322221 34679999999999999999999999999999999999999999


Q ss_pred             HHhHh
Q 041300          711 LAAIL  715 (716)
Q Consensus       711 L~~~l  715 (716)
                      |.+++
T Consensus        80 L~~~l   84 (262)
T cd05572          80 LWTIL   84 (262)
T ss_pred             HHHHH
Confidence            99886

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=98.83  E-value=1.1e-08  Score=106.18  Aligned_cols=88  Identities=20%  Similarity=0.356  Sum_probs=72.8

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ..|...+.||+|+||.||+|... ++..||+|+++......   ....+.+|++++++++||||+++++++..++..++|
T Consensus         6 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~---~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv   82 (309)
T cd07872           6 ETYIKLEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEG---APCTAIREVSLLKDLKHANIVTLHDIVHTDKSLTLV   82 (309)
T ss_pred             CceEEEEEecccCCEEEEEEEecCCCCeEEEEEeeccccCC---cchhHHHHHHHHHhCCCCCcceEEEEEeeCCeEEEE
Confidence            45778889999999999999754 57889999987532211   234578899999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      |||+++ +|.+++
T Consensus        83 ~e~~~~-~l~~~~   94 (309)
T cd07872          83 FEYLDK-DLKQYM   94 (309)
T ss_pred             EeCCCC-CHHHHH
Confidence            999985 777664

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=98.83  E-value=7.1e-09  Score=105.87  Aligned_cols=90  Identities=21%  Similarity=0.357  Sum_probs=74.6

Q ss_pred             hcCCcccccccCCCceEEEEEEcCC-----CCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEe-C
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELPS-----GEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSH-A  696 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~~-----~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~-~  696 (716)
                      .++|...++||+|+||.||+|....     +..||+|++....   .....+.+.+|+.++++++|||++++++++.. +
T Consensus         5 ~~~~~~~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~---~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~   81 (280)
T cd05043           5 RDRVTLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHA---SEIQVTLLLQESCLLYGLSHQNILPILHVCIEDG   81 (280)
T ss_pred             hhheEEeeeecccCCceEEEEEEecCCCCceeEEEEEEccCCC---CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCC
Confidence            3568888999999999999997654     6789999986422   11235678999999999999999999999876 4


Q ss_pred             CeeeEEEcccCCCCHHhHh
Q 041300          697 QHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       697 ~~~~lv~Ey~~~GsL~~~l  715 (716)
                      ...++++||+++|+|.+++
T Consensus        82 ~~~~~~~~~~~~~~L~~~l  100 (280)
T cd05043          82 EPPFVLYPYMNWGNLKLFL  100 (280)
T ss_pred             CCCEEEEEcCCCCcHHHHH
Confidence            6789999999999999886

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=98.83  E-value=1e-08  Score=104.96  Aligned_cols=89  Identities=26%  Similarity=0.435  Sum_probs=74.4

Q ss_pred             CCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          625 DFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      +|.....||+|+||.||+|... +++.||+|++........  ..+.+.+|++++.+++|+|++++++++..+...++||
T Consensus         2 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~--~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~   79 (286)
T cd07847           2 KYEKLSKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPV--IKKIALREIRMLKQLKHPNLVNLIEVFRRKRKLHLVF   79 (286)
T ss_pred             ceeeeeeecccCCeEEEEEEECCCCcEEEEEEEeecccCcc--ccHHHHHHHHHHHhCCCCCEeeeeeEEeeCCEEEEEE
Confidence            5777788999999999999765 588999999865322111  2356889999999999999999999999999999999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      ||++++.|..+.
T Consensus        80 e~~~~~~l~~~~   91 (286)
T cd07847          80 EYCDHTVLNELE   91 (286)
T ss_pred             eccCccHHHHHH
Confidence            999999887654

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=98.83  E-value=1.1e-08  Score=104.10  Aligned_cols=87  Identities=26%  Similarity=0.526  Sum_probs=68.7

Q ss_pred             cccccccCCCceEEEEEEcCC-CC--EEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC------C
Q 041300          627 DAEYCIGNGGHGSVYRAELPS-GE--VVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA------Q  697 (716)
Q Consensus       627 ~~~~~ig~g~~g~v~~~~~~~-~~--~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~------~  697 (716)
                      ...++||+|+||.||+|.... +.  .||||.++.... . ....+.|.+|++++++++|+||++++++|...      .
T Consensus         2 ~i~~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~-~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   79 (272)
T cd05075           2 ALGKTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAIC-T-RSEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTVESEGYP   79 (272)
T ss_pred             ccccccCcccCceEEEeEEccCCCeeeEEEEecccCcC-C-HHHHHHHHHHHHHHHhCCCCCcceEEEEEccCCcccCCC
Confidence            456789999999999997654 32  689998875321 1 12456799999999999999999999988542      2


Q ss_pred             eeeEEEcccCCCCHHhHh
Q 041300          698 HSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       698 ~~~lv~Ey~~~GsL~~~l  715 (716)
                      ..++|||||++|+|.+++
T Consensus        80 ~~~~v~e~~~~~~l~~~~   97 (272)
T cd05075          80 SPVVILPFMKHGDLHSFL   97 (272)
T ss_pred             CcEEEEEeCCCCcHHHHH
Confidence            468999999999998875

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=98.83  E-value=1e-08  Score=103.64  Aligned_cols=88  Identities=31%  Similarity=0.446  Sum_probs=75.9

Q ss_pred             CCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          625 DFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      +|...+.||+|+||.||++... +++.||+|++.....  . ...+++.+|++++++++||||+++++++..++..++|+
T Consensus         2 ~~~~~~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~--~-~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   78 (265)
T cd06605           2 DLEYLGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEIN--E-AIQKQILRELDILHKCNSPYIVGFYGAFYNNGDISICM   78 (265)
T ss_pred             cchHHHHhcCCCCeEEEEEEEcCCCcEEEEEEEecccC--h-HHHHHHHHHHHHHHHCCCCchhhhheeeecCCEEEEEE
Confidence            5677788999999999999765 588999999876321  1 24567999999999999999999999999999999999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      ||+++++|.+++
T Consensus        79 e~~~~~~L~~~~   90 (265)
T cd06605          79 EYMDGGSLDKIL   90 (265)
T ss_pred             EecCCCcHHHHH
Confidence            999999999876

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=98.83  E-value=8.6e-09  Score=105.95  Aligned_cols=88  Identities=34%  Similarity=0.639  Sum_probs=73.5

Q ss_pred             cCCcccccccCCCceEEEEEEcC------CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP------SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ  697 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~------~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~  697 (716)
                      .+|...+.||+|+||.||+|...      ++..||+|.+....    ....+.|.+|++++++++|+||+++++++...+
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~----~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   80 (291)
T cd05094           5 RDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPT----LAARKDFQREAELLTNLQHEHIVKFYGVCGDGD   80 (291)
T ss_pred             HHeEEeeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCcc----HHHHHHHHHHHHHHhcCCCCCcceEEEEEccCC
Confidence            35777789999999999999632      34568899886421    123467999999999999999999999999999


Q ss_pred             eeeEEEcccCCCCHHhHh
Q 041300          698 HSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       698 ~~~lv~Ey~~~GsL~~~l  715 (716)
                      ..++||||+++|+|.+++
T Consensus        81 ~~~lv~e~~~~~~L~~~i   98 (291)
T cd05094          81 PLIMVFEYMKHGDLNKFL   98 (291)
T ss_pred             ceEEEEecCCCCcHHHHH
Confidence            999999999999999986

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>PRK09188 serine/threonine protein kinase; Provisional

Probab=98.82  E-value=9.5e-09  Score=106.54  Aligned_cols=90  Identities=19%  Similarity=0.157  Sum_probs=67.8

Q ss_pred             HhhcCCcccccccCCCceEEEEEEcC--CCCEEEEEEccccCCc-cchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC
Q 041300          621 RETNDFDAEYCIGNGGHGSVYRAELP--SGEVVAVKKFHSSIPC-DQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ  697 (716)
Q Consensus       621 ~~~~~~~~~~~ig~g~~g~v~~~~~~--~~~~vavK~l~~~~~~-~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~  697 (716)
                      ....+|...++||+|+||+||+|...  +++.||||++...... ........|.+|++++++++|+|+|+.+..   .+
T Consensus        15 ~~~~~Y~~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~iv~~l~~---~~   91 (365)
T PRK09188         15 ALSARFVETAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGVVPQLLA---TG   91 (365)
T ss_pred             cccCCceEccEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCCCcEEEE---cC
Confidence            34467999999999999999999654  5777899987532110 111134569999999999999999963322   24


Q ss_pred             eeeEEEcccCCCCHHh
Q 041300          698 HSFLVYEFLERGSLAA  713 (716)
Q Consensus       698 ~~~lv~Ey~~~GsL~~  713 (716)
                      ..|+|||||++++|..
T Consensus        92 ~~~LVmE~~~G~~L~~  107 (365)
T PRK09188         92 KDGLVRGWTEGVPLHL  107 (365)
T ss_pred             CcEEEEEccCCCCHHH
Confidence            6799999999999863

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=98.82  E-value=7.7e-09  Score=105.10  Aligned_cols=89  Identities=29%  Similarity=0.539  Sum_probs=73.3

Q ss_pred             hhcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeC---
Q 041300          622 ETNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHA---  696 (716)
Q Consensus       622 ~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~---  696 (716)
                      +++.|...+.||+|+||+||+|... +++.||+|++....  .   ...++.+|+.++.++ +|+|++++++++...   
T Consensus         4 ~~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~--~---~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~   78 (272)
T cd06637           4 PAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTG--D---EEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPP   78 (272)
T ss_pred             hhhhhhHHHheeecCCeEEEEEEEcCCCcEEEEEEEEcCC--c---cHHHHHHHHHHHHHhcCCCCeeeEeeEEeecCCC
Confidence            4556788889999999999999754 57899999986531  1   335688999999998 799999999999753   


Q ss_pred             ---CeeeEEEcccCCCCHHhHh
Q 041300          697 ---QHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       697 ---~~~~lv~Ey~~~GsL~~~l  715 (716)
                         +..|+||||+++|+|.+++
T Consensus        79 ~~~~~~~iv~e~~~~~~L~~~l  100 (272)
T cd06637          79 GMDDQLWLVMEFCGAGSVTDLI  100 (272)
T ss_pred             CCCcEEEEEEEcCCCCcHHHHH
Confidence               3578999999999999876

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=98.82  E-value=1e-08  Score=103.21  Aligned_cols=82  Identities=30%  Similarity=0.475  Sum_probs=67.3

Q ss_pred             cccCCCceEEEEEEc---CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEcccC
Q 041300          631 CIGNGGHGSVYRAEL---PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLE  707 (716)
Q Consensus       631 ~ig~g~~g~v~~~~~---~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~  707 (716)
                      .||+|+||.||+|.+   .++..||+|+++....  .....++|.+|+.++++++||||++++|++. .+..++||||++
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~aiK~~~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-~~~~~lv~e~~~   78 (257)
T cd05116           2 ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNN--DPALKDELLREANVMQQLDNPYIVRMIGICE-AESWMLVMELAE   78 (257)
T ss_pred             cCCCcCCcceEEeEEecCCCceEEEEEEccCCCC--cHHHHHHHHHHHHHHHhCCCCCcceEEEEEc-CCCcEEEEecCC
Confidence            589999999999964   3567899999864321  1124567999999999999999999999885 456789999999


Q ss_pred             CCCHHhHh
Q 041300          708 RGSLAAIL  715 (716)
Q Consensus       708 ~GsL~~~l  715 (716)
                      +|+|.+++
T Consensus        79 ~~~L~~~l   86 (257)
T cd05116          79 LGPLNKFL   86 (257)
T ss_pred             CCcHHHHH
Confidence            99999876

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=98.82  E-value=1.1e-08  Score=102.99  Aligned_cols=86  Identities=33%  Similarity=0.504  Sum_probs=76.1

Q ss_pred             cCCcccccccCCCceEEEEEEcCC-CCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELPS-GEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~~-~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ++|...++||+|+||.||+|...+ +..||+|.+....      ..+++.+|++++++++|+|++++++++..+...++|
T Consensus         3 ~~y~~~~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~~------~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~   76 (256)
T cd06612           3 EVFDILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEE------DLQEIIKEISILKQCDSPYIVKYYGSYFKNTDLWIV   76 (256)
T ss_pred             ccchhhhhhcCCCCeEEEEEEEcCCCcEEEEEEeecHH------HHHHHHHHHHHHHhCCCCcEeeeeeeeecCCcEEEE
Confidence            468888999999999999997654 7899999986521      246899999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      +||+++++|.+++
T Consensus        77 ~e~~~~~~L~~~l   89 (256)
T cd06612          77 MEYCGAGSVSDIM   89 (256)
T ss_pred             EecCCCCcHHHHH
Confidence            9999999999876

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=98.82  E-value=8.8e-09  Score=103.71  Aligned_cols=82  Identities=30%  Similarity=0.456  Sum_probs=69.2

Q ss_pred             ccccCCCceEEEEEEcCC--C--CEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEcc
Q 041300          630 YCIGNGGHGSVYRAELPS--G--EVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEF  705 (716)
Q Consensus       630 ~~ig~g~~g~v~~~~~~~--~--~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  705 (716)
                      ++||+|+||.||+|.+..  +  ..||||++......   ...+.|.+|++++++++|||||++++++.. ...++||||
T Consensus         1 ~~ig~g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~v~e~   76 (257)
T cd05040           1 KKLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLS---DIMDDFLKEAAIMHSLDHENLIRLYGVVLT-HPLMMVTEL   76 (257)
T ss_pred             CcCCccCcccEEeeeEecCCCCceEEEEeecCCcccH---HHHHHHHHHHHHHhhcCCCCccceeEEEcC-CeEEEEEEe
Confidence            368999999999997643  3  36899999764321   245789999999999999999999999988 889999999


Q ss_pred             cCCCCHHhHh
Q 041300          706 LERGSLAAIL  715 (716)
Q Consensus       706 ~~~GsL~~~l  715 (716)
                      +++|+|.+++
T Consensus        77 ~~~~~L~~~l   86 (257)
T cd05040          77 APLGSLLDRL   86 (257)
T ss_pred             cCCCcHHHHH
Confidence            9999999876

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=98.82  E-value=1.5e-08  Score=102.44  Aligned_cols=88  Identities=31%  Similarity=0.510  Sum_probs=75.8

Q ss_pred             CcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEc
Q 041300          626 FDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYE  704 (716)
Q Consensus       626 ~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~E  704 (716)
                      |...+.||+|+||.||+|... ++..||+|.+......  ....+++.+|++++++++|+||+++++++...+..++|+|
T Consensus         2 y~~~~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~~--~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~lv~e   79 (264)
T cd06626           2 WQRGNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDND--PKTIKEIADEMKVLELLKHPNLVKYYGVEVHREKVYIFME   79 (264)
T ss_pred             ceeeeEeecCCCcEEEEEEECCCCcEEEEEEEECcccc--hHHHHHHHHHHHHHHhCCCCChhheeeeEecCCEEEEEEe
Confidence            666788999999999999754 6889999998764322  1245679999999999999999999999999999999999


Q ss_pred             ccCCCCHHhHh
Q 041300          705 FLERGSLAAIL  715 (716)
Q Consensus       705 y~~~GsL~~~l  715 (716)
                      |+++++|.+++
T Consensus        80 ~~~~~~L~~~~   90 (264)
T cd06626          80 YCSGGTLEELL   90 (264)
T ss_pred             cCCCCcHHHHH
Confidence            99999999886

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=98.82  E-value=9e-09  Score=104.50  Aligned_cols=88  Identities=30%  Similarity=0.477  Sum_probs=71.4

Q ss_pred             cCCcccccccCCCceEEEEEEcCC----CCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCee
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELPS----GEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHS  699 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~~----~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~  699 (716)
                      .+|...+.||+|+||.||+|...+    ...||||.......   ....+.|.+|+.++++++|||++++++++.+ +..
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~---~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-~~~   81 (270)
T cd05056           6 EDITLGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTS---PSVREKFLQEAYIMRQFDHPHIVKLIGVITE-NPV   81 (270)
T ss_pred             hhceeeeeeCCccceeEEEEEEecCCCCCcceEEEecCCcCC---HHHHHHHHHHHHHHHhCCCCchhceeEEEcC-CCc
Confidence            347778899999999999997533    24689998865321   2244679999999999999999999999865 567


Q ss_pred             eEEEcccCCCCHHhHh
Q 041300          700 FLVYEFLERGSLAAIL  715 (716)
Q Consensus       700 ~lv~Ey~~~GsL~~~l  715 (716)
                      ++||||+++|+|.+++
T Consensus        82 ~lv~e~~~~~~L~~~l   97 (270)
T cd05056          82 WIVMELAPLGELRSYL   97 (270)
T ss_pred             EEEEEcCCCCcHHHHH
Confidence            8999999999999886

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=98.82  E-value=1.5e-08  Score=103.77  Aligned_cols=88  Identities=28%  Similarity=0.450  Sum_probs=72.7

Q ss_pred             CCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          625 DFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      +|...+.||+|+||.||+|... ++..||||++.......  .....+.+|+.++.+++|||++++++++.+++..++||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   78 (285)
T cd07861           1 DYTKIEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEE--GVPSTAIREISLLKELQHPNIVCLQDVLMQESRLYLIF   78 (285)
T ss_pred             CceEeeEecccCceEEEEEEECCCCcEEEEEEeccccccC--CchHHHHHHHHHHHhcCCCCEeeeEEEEeeCCeEEEEE
Confidence            3667788999999999999754 68899999986532111  12356889999999999999999999999999999999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      ||++ |+|.+++
T Consensus        79 e~~~-~~l~~~~   89 (285)
T cd07861          79 EFLS-MDLKKYL   89 (285)
T ss_pred             ecCC-CCHHHHH
Confidence            9998 6887765

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=98.81  E-value=1.2e-08  Score=103.93  Aligned_cols=88  Identities=32%  Similarity=0.567  Sum_probs=73.9

Q ss_pred             CCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCC---CCCccccceEEEeCCeee
Q 041300          625 DFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR---HRNIVKFYGFCSHAQHSF  700 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~---H~niv~l~g~~~~~~~~~  700 (716)
                      .|...+.||+|+||.||+|.. .++..||||.+......   ....++.+|++++++++   |||++++++++..++..+
T Consensus         2 ~y~~~~~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~---~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~~~~~~   78 (277)
T cd06917           2 LYQRLELIGRGAYGAVYRGKHVPTGRVVALKIINLDTPD---DDVSDIQREVALLSQLRQSQPPNITKYYGSYLKGPRLW   78 (277)
T ss_pred             hhhhhhheeccCCceEEEEEEcCCCcEEEEEEecCCCCc---hhHHHHHHHHHHHHHhccCCCCCeeeEeeeeeeCCEEE
Confidence            366677899999999999975 46889999998653211   13467889999999987   999999999999999999


Q ss_pred             EEEcccCCCCHHhHh
Q 041300          701 LVYEFLERGSLAAIL  715 (716)
Q Consensus       701 lv~Ey~~~GsL~~~l  715 (716)
                      +||||+++|+|.+++
T Consensus        79 lv~e~~~~~~L~~~~   93 (277)
T cd06917          79 IIMEYAEGGSVRTLM   93 (277)
T ss_pred             EEEecCCCCcHHHHH
Confidence            999999999999876

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=98.81  E-value=1.8e-08  Score=102.07  Aligned_cols=90  Identities=32%  Similarity=0.466  Sum_probs=73.4

Q ss_pred             CcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccc-----hhhHHHHHHHHHHHhcCCCCCccccceEEEeCCee
Q 041300          626 FDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQ-----IADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHS  699 (716)
Q Consensus       626 ~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~-----~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~  699 (716)
                      |.....||+|+||.||+|.. .++..||+|.+........     ....+.+.+|++++++++||||+++++++.+.+..
T Consensus         2 ~~~~~~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   81 (267)
T cd06628           2 WIKGALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENIVQYLGSSLDADHL   81 (267)
T ss_pred             ccccceeecCCCeEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEeCCcc
Confidence            45667899999999999964 4578999998865322211     01224688999999999999999999999999999


Q ss_pred             eEEEcccCCCCHHhHh
Q 041300          700 FLVYEFLERGSLAAIL  715 (716)
Q Consensus       700 ~lv~Ey~~~GsL~~~l  715 (716)
                      ++||||+++++|.+++
T Consensus        82 ~lv~e~~~~~~L~~~l   97 (267)
T cd06628          82 NIFLEYVPGGSVAALL   97 (267)
T ss_pred             EEEEEecCCCCHHHHH
Confidence            9999999999998876

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=98.81  E-value=1.3e-08  Score=105.09  Aligned_cols=88  Identities=23%  Similarity=0.356  Sum_probs=73.0

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ++|...+.||+|+||.||+|... ++..||+|.+.......   ....+.+|+.++++++||||+++++++..++..++|
T Consensus         6 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~~---~~~~~~~E~~~l~~l~h~nI~~~~~~~~~~~~~~lv   82 (301)
T cd07873           6 ETYIKLDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEG---APCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLV   82 (301)
T ss_pred             cceEEeeEeccCcCEEEEEEEEcCCCcEEEEEEEecccccC---chhHHHHHHHHHHhcCCCCcceEEEEEecCCeEEEE
Confidence            45788889999999999999654 57899999986532111   234678899999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      |||++ |+|.+++
T Consensus        83 ~e~~~-~~l~~~l   94 (301)
T cd07873          83 FEYLD-KDLKQYL   94 (301)
T ss_pred             Eeccc-cCHHHHH
Confidence            99998 5887765

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=98.81  E-value=1.6e-08  Score=102.25  Aligned_cols=88  Identities=30%  Similarity=0.494  Sum_probs=76.6

Q ss_pred             CCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          625 DFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      +|...+.||+|++|.||++... ++..||||++......   ...+++.+|++.+.+++|+|++++++++..++..++||
T Consensus         2 ~~~~~~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~~---~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~   78 (264)
T cd06623           2 DLERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDE---EFRKQLLRELKTLRSCESPYVVKCYGAFYKEGEISIVL   78 (264)
T ss_pred             cceeeeeeeecCCeEEEEEEEcCCCcEEEEEEeccCcch---HHHHHHHHHHHHHHhcCCCCeeeEEEEEccCCeEEEEE
Confidence            5777889999999999999765 4889999998763221   24577999999999999999999999999999999999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      ||+++|+|.+++
T Consensus        79 e~~~~~~L~~~l   90 (264)
T cd06623          79 EYMDGGSLADLL   90 (264)
T ss_pred             EecCCCcHHHHH
Confidence            999999999886

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=98.81  E-value=1.3e-08  Score=104.29  Aligned_cols=89  Identities=27%  Similarity=0.494  Sum_probs=77.5

Q ss_pred             hhcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeee
Q 041300          622 ETNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSF  700 (716)
Q Consensus       622 ~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~  700 (716)
                      .+..|...+.+|+|+||.||+|..+ ++..||+|++.....     ....+.+|++.+++++|+|++++++++..++..+
T Consensus        17 ~~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~-----~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   91 (286)
T cd06614          17 PRELYKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQ-----NKELIINEILIMKDCKHPNIVDYYDSYLVGDELW   91 (286)
T ss_pred             ccccchHhHhccCCCCeEEEEEEEccCCcEEEEEEEecCch-----hHHHHHHHHHHHHHCCCCCeeEEEEEEEECCEEE
Confidence            3456778889999999999999765 578999999875321     3467899999999999999999999999999999


Q ss_pred             EEEcccCCCCHHhHh
Q 041300          701 LVYEFLERGSLAAIL  715 (716)
Q Consensus       701 lv~Ey~~~GsL~~~l  715 (716)
                      +|+||+++++|.+++
T Consensus        92 lv~e~~~~~~L~~~l  106 (286)
T cd06614          92 VVMEYMDGGSLTDII  106 (286)
T ss_pred             EEEeccCCCcHHHHH
Confidence            999999999999886

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=98.81  E-value=1.1e-08  Score=104.37  Aligned_cols=88  Identities=24%  Similarity=0.487  Sum_probs=72.8

Q ss_pred             cCCcccccccCCCceEEEEEEcCC-CC----EEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCe
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELPS-GE----VVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQH  698 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~~-~~----~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~  698 (716)
                      .+|...+.||+|+||.||+|...+ |.    .||+|.+.....   .....++.+|++.+++++|||+++++++|.. +.
T Consensus         7 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~   82 (279)
T cd05057           7 TELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETS---PKANKEILDEAYVMASVDHPHVVRLLGICLS-SQ   82 (279)
T ss_pred             HHcEEcceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCC---HHHHHHHHHHHHHHHhCCCCCcceEEEEEec-Cc
Confidence            457778899999999999997542 32    689998875322   2244679999999999999999999999977 78


Q ss_pred             eeEEEcccCCCCHHhHh
Q 041300          699 SFLVYEFLERGSLAAIL  715 (716)
Q Consensus       699 ~~lv~Ey~~~GsL~~~l  715 (716)
                      .++||||+++|+|.+++
T Consensus        83 ~~~v~e~~~~g~L~~~l   99 (279)
T cd05057          83 VQLITQLMPLGCLLDYV   99 (279)
T ss_pred             eEEEEecCCCCcHHHHH
Confidence            89999999999999876

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=98.81  E-value=1.2e-08  Score=104.80  Aligned_cols=88  Identities=22%  Similarity=0.388  Sum_probs=73.3

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ++|...+.||+|+||.||+|... +++.||||.+.......   ....+.+|++++++++|+||+++++++.+++..++|
T Consensus         5 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~---~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv   81 (291)
T cd07844           5 ETYKKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEG---APFTAIREASLLKDLKHANIVTLHDIIHTKKTLTLV   81 (291)
T ss_pred             cceeEEEEEeecCCeEEEEEEEcCCCcEEEEEEEecccccC---CchhHHHHHHHHhhCCCcceeeEEEEEecCCeEEEE
Confidence            46788889999999999999754 67899999986532111   224577899999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      |||+++ +|.+++
T Consensus        82 ~e~~~~-~L~~~~   93 (291)
T cd07844          82 FEYLDT-DLKQYM   93 (291)
T ss_pred             EecCCC-CHHHHH
Confidence            999985 898765

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=98.81  E-value=4.9e-09  Score=106.32  Aligned_cols=83  Identities=31%  Similarity=0.573  Sum_probs=69.2

Q ss_pred             ccccCCCceEEEEEEcCC-------CCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          630 YCIGNGGHGSVYRAELPS-------GEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       630 ~~ig~g~~g~v~~~~~~~-------~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      +.||+|+||.||+|+..+       +..||||.+.....   .....+|.+|++++++++||||++++++|...+..++|
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v   77 (269)
T cd05044           1 NFLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGAT---DQEKKEFLKEAHLMSNFNHPNIVKLLGVCLLNEPQYII   77 (269)
T ss_pred             CccccccceeEEeeeecccccCcccceeehhhhhhcccc---hhhHHHHHHHHHHHHhcCCCCeeeEeeeecCCCCeEEE
Confidence            358999999999997532       25789998865321   11346799999999999999999999999998899999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      |||+++|+|.+++
T Consensus        78 ~e~~~~~~L~~~l   90 (269)
T cd05044          78 MELMEGGDLLSYL   90 (269)
T ss_pred             EeccCCCcHHHHH
Confidence            9999999999886

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=98.80  E-value=1.6e-08  Score=103.61  Aligned_cols=88  Identities=30%  Similarity=0.433  Sum_probs=74.6

Q ss_pred             CCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          625 DFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      +|...+.||+|+||.||+|... ++..||||++.......  .....+.+|++++++++|||++++++++..++..++||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~--~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~   78 (286)
T cd07832           1 RYKILGRIGEGAHGIVFKAKDRETGETVALKKVALRRLEG--GIPNQALREIKALQACQHPYVVKLLDVFPHGSGFVLVM   78 (286)
T ss_pred             CceEEeecccCCCcEEEEEEECCCCceEEEEEEEcccccc--hhhHHHHHHHHHHHhCCCCCCcceeeEEecCCeeEEEe
Confidence            3667788999999999999754 68899999987643211  13467999999999999999999999999999999999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      ||+ +|+|.+++
T Consensus        79 e~~-~~~L~~~~   89 (286)
T cd07832          79 EYM-PSDLSEVL   89 (286)
T ss_pred             ccc-CCCHHHHH
Confidence            999 99999875

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=98.80  E-value=1.3e-08  Score=108.61  Aligned_cols=88  Identities=23%  Similarity=0.414  Sum_probs=71.5

Q ss_pred             CCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC-----e
Q 041300          625 DFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ-----H  698 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~-----~  698 (716)
                      +|+..+.||+|+||.||++.. .+++.||||++....  ......+.+.+|+++++.++|+||+++++++..++     .
T Consensus         1 ~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~   78 (372)
T cd07853           1 DVEPDRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVF--QNLVSCKRVFRELKMLCFFKHDNVLSALDILQPPHIDPFEE   78 (372)
T ss_pred             CCcccceeeeCCCEEEEEEEECCCCCEEEEEeccccc--cchHHHHHHHHHHHHHHhCCCCCcCCHhheecCCCccccce
Confidence            467788999999999999974 468999999986431  11224467889999999999999999999998776     7


Q ss_pred             eeEEEcccCCCCHHhHh
Q 041300          699 SFLVYEFLERGSLAAIL  715 (716)
Q Consensus       699 ~~lv~Ey~~~GsL~~~l  715 (716)
                      .|+||||+. ++|.+++
T Consensus        79 ~~lv~e~~~-~~l~~~~   94 (372)
T cd07853          79 IYVVTELMQ-SDLHKII   94 (372)
T ss_pred             EEEEeeccc-cCHHHHH
Confidence            899999997 4776654

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=98.80  E-value=1.1e-08  Score=105.28  Aligned_cols=95  Identities=28%  Similarity=0.484  Sum_probs=77.8

Q ss_pred             HHHHHHhhcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEE
Q 041300          616 YDEIVRETNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFC  693 (716)
Q Consensus       616 ~~~~~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~  693 (716)
                      .+++..++++|...+.||+|+||.||++.. .+++.+|+|++....   .  ...++.+|+.++.++ +|||++++++++
T Consensus        14 ~~~~~~~~~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~---~--~~~~~~~e~~~l~~l~~h~ni~~~~~~~   88 (291)
T cd06639          14 LESLGDPTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPIS---D--VDEEIEAEYNILQSLPNHPNVVKFYGMF   88 (291)
T ss_pred             cccCCCCCCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEecccc---c--HHHHHHHHHHHHHHhcCCCCeEEEEEEE
Confidence            345556678899999999999999999965 468899999986521   1  235678899999999 899999999999


Q ss_pred             EeCC-----eeeEEEcccCCCCHHhHh
Q 041300          694 SHAQ-----HSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       694 ~~~~-----~~~lv~Ey~~~GsL~~~l  715 (716)
                      ...+     ..++||||+++|+|.+++
T Consensus        89 ~~~~~~~~~~~~lv~ey~~~~sL~~~~  115 (291)
T cd06639          89 YKADKLVGGQLWLVLELCNGGSVTELV  115 (291)
T ss_pred             EeccccCCCeeEEEEEECCCCcHHHHH
Confidence            7643     579999999999998875

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=98.80  E-value=1.5e-08  Score=104.62  Aligned_cols=90  Identities=26%  Similarity=0.430  Sum_probs=74.0

Q ss_pred             CcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccc-hhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          626 FDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQ-IADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       626 ~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~-~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      |...+.||+|+||.||+|... +++.||||++........ ......+..|++++++++|+|++++++++.+.+..++||
T Consensus         2 y~~~~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~   81 (298)
T cd07841           2 YEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDVFGHKSNINLVF   81 (298)
T ss_pred             ceeeeeeeeccccEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCChhhhheeecCCEEEEEE
Confidence            667788999999999999754 588999999976432211 112345778999999999999999999999989999999


Q ss_pred             cccCCCCHHhHhC
Q 041300          704 EFLERGSLAAILS  716 (716)
Q Consensus       704 Ey~~~GsL~~~l~  716 (716)
                      ||+ +|+|.++++
T Consensus        82 e~~-~~~L~~~i~   93 (298)
T cd07841          82 EFM-ETDLEKVIK   93 (298)
T ss_pred             ccc-CCCHHHHHh
Confidence            999 999998863

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=98.80  E-value=1.7e-08  Score=103.86  Aligned_cols=88  Identities=24%  Similarity=0.454  Sum_probs=75.0

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      +.|...++||+|+||.||+|+.. ++..||+|++...   . ....+.+.+|+++++.++|||++++++++..++..++|
T Consensus        12 ~~y~i~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~---~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   87 (292)
T cd06644          12 EVWEIIGELGDGAFGKVYKAKNKETGALAAAKVIETK---S-EEELEDYMVEIEILATCNHPYIVKLLGAFYWDGKLWIM   87 (292)
T ss_pred             hhhhhhheecCCCCeEEEEEEECCCCceEEEEEeccC---C-HHHHHHHHHHHHHHHhCCCCcEeeeEEEEEeCCeEEEE
Confidence            45777888999999999999754 4789999998652   1 12456789999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      |||+++|+|.+++
T Consensus        88 ~e~~~~~~l~~~~  100 (292)
T cd06644          88 IEFCPGGAVDAIM  100 (292)
T ss_pred             EecCCCCcHHHHH
Confidence            9999999997654

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=98.80  E-value=8.8e-09  Score=108.14  Aligned_cols=88  Identities=25%  Similarity=0.451  Sum_probs=72.9

Q ss_pred             CCcccccccCCCceEEEEEEcC--------CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEe
Q 041300          625 DFDAEYCIGNGGHGSVYRAELP--------SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSH  695 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~~--------~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~  695 (716)
                      .|...+.||+|+||.||++...        .+..||+|.+....   .....+++.+|++++.++ +||||++++++|..
T Consensus        13 ~~~i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~   89 (334)
T cd05100          13 RLTLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDA---TDKDLSDLVSEMEMMKMIGKHKNIINLLGACTQ   89 (334)
T ss_pred             HeeecceeccccCCcEEEEEEeccCCccCCcceeEEEEEccccc---CHHHHHHHHHHHHHHHhhcCCCCeeeeeEEEcc
Confidence            5778889999999999999632        12368999886421   112356799999999999 89999999999999


Q ss_pred             CCeeeEEEcccCCCCHHhHh
Q 041300          696 AQHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       696 ~~~~~lv~Ey~~~GsL~~~l  715 (716)
                      ++..++||||+++|+|.+++
T Consensus        90 ~~~~~lv~e~~~~g~L~~~l  109 (334)
T cd05100          90 DGPLYVLVEYASKGNLREYL  109 (334)
T ss_pred             CCceEEEEecCCCCcHHHHH
Confidence            99999999999999999886

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=98.80  E-value=9.6e-09  Score=111.84  Aligned_cols=96  Identities=26%  Similarity=0.487  Sum_probs=77.4

Q ss_pred             HHHHHHhhcCCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEE
Q 041300          616 YDEIVRETNDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFC  693 (716)
Q Consensus       616 ~~~~~~~~~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~  693 (716)
                      ++.+...++.|.+.++||.|.||+||+++ .++++.+|||++.....     ...+...|.++++.. .|||++.++|++
T Consensus        11 ~~~lpdp~d~~ei~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~d-----~deEiE~eynil~~~~~hpnv~~fyg~~   85 (953)
T KOG0587|consen   11 LSSLPDPADIFEIIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTED-----EEEEIELEYNMLKKYSHHPNVATFYGAF   85 (953)
T ss_pred             hhhCCCCCCccEEEEEEeeccceeEEEEeeeecCceeeeEeecCCcc-----ccHHHHHHHHHHHhccCCCCcceEEEEE
Confidence            34444556778899999999999999995 55789999999876321     335677788888777 799999999999


Q ss_pred             Ee-----CCeeeEEEcccCCCCHHhHhC
Q 041300          694 SH-----AQHSFLVYEFLERGSLAAILS  716 (716)
Q Consensus       694 ~~-----~~~~~lv~Ey~~~GsL~~~l~  716 (716)
                      .-     +++.|||||||.+|+..|+++
T Consensus        86 ~k~~~~~~DqLWLVMEfC~gGSVTDLVK  113 (953)
T KOG0587|consen   86 IKKDPGNGDQLWLVMEFCGGGSVTDLVK  113 (953)
T ss_pred             EEecCCCCCeEEEEeeccCCccHHHHHh
Confidence            54     578999999999999998763

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=98.80  E-value=8.3e-09  Score=105.29  Aligned_cols=90  Identities=23%  Similarity=0.335  Sum_probs=76.3

Q ss_pred             CCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCC-CCCccccceEEEeCCeeeEE
Q 041300          625 DFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR-HRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~-H~niv~l~g~~~~~~~~~lv  702 (716)
                      +|...+.||+|+||.||+|... ++..||+|++......... ..+.+.+|++++++++ ||||+++++++..++..++|
T Consensus         2 ~y~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~-~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv   80 (280)
T cd05581           2 DFKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEK-KVKYVKIEKEVLTRLNGHPGIIKLYYTFQDEENLYFV   80 (280)
T ss_pred             CceEeeeecCCCceEEEEEEEcCCCCEEEEEEechHhccchH-HHHHHHHHHHHHHhcccCCCchhHHHHhcCCceEEEE
Confidence            5778889999999999999754 6889999998753222222 3467889999999998 99999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      |||+++|+|.+++
T Consensus        81 ~e~~~~~~L~~~l   93 (280)
T cd05581          81 LEYAPNGELLQYI   93 (280)
T ss_pred             EcCCCCCcHHHHH
Confidence            9999999999876

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=98.80  E-value=6.6e-09  Score=109.03  Aligned_cols=89  Identities=27%  Similarity=0.452  Sum_probs=71.8

Q ss_pred             cCCcccccccCCCceEEEEEEcC------CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeC
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP------SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHA  696 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~------~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~  696 (716)
                      +.|...++||+|+||.||+|...      .++.||+|+++....  . ...+.+.+|++++.++ +|+||++++++|...
T Consensus         7 ~~~~i~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~--~-~~~~~~~~E~~~~~~l~~h~niv~~~~~~~~~   83 (337)
T cd05054           7 DRLKLGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGAT--A-SEYKALMTELKILIHIGHHLNVVNLLGACTKP   83 (337)
T ss_pred             HHhhhhcccccCcCceEEeccccccccccccceeeeeeccCCCC--H-HHHHHHHHHHHHHHhhccCcchhheeeeEecC
Confidence            35788899999999999999532      246899999875321  1 1345688899999999 899999999988654


Q ss_pred             -CeeeEEEcccCCCCHHhHh
Q 041300          697 -QHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       697 -~~~~lv~Ey~~~GsL~~~l  715 (716)
                       ...++||||+++|+|.+++
T Consensus        84 ~~~~~~v~ey~~~~~L~~~i  103 (337)
T cd05054          84 GGPLMVIVEYCKFGNLSNYL  103 (337)
T ss_pred             CCCEEEEEecCCCCCHHHHH
Confidence             4678999999999999886

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=98.79  E-value=6.1e-09  Score=104.96  Aligned_cols=88  Identities=31%  Similarity=0.484  Sum_probs=72.3

Q ss_pred             CcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEc
Q 041300          626 FDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYE  704 (716)
Q Consensus       626 ~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~E  704 (716)
                      |...+.||+|+||+||++... ++..||+|++......  ........+|+.++.+++||||+++++++.+....++|||
T Consensus         1 y~~~~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~--~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~v~~   78 (260)
T PF00069_consen    1 YRLVKKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEIE--EEEREENIREIKILRRLRHPNIVQILDVFQDDNYLYIVME   78 (260)
T ss_dssp             EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEESTTHH--HHHHHHHHHHHHHHHHHTBTTBCHEEEEEEESSEEEEEEE
T ss_pred             CEEeEEEEeCCCEEEEEEEECCCCeEEEEEEecccccc--ccccchhhhhhhcccccccccccccccccccccccccccc
Confidence            455678999999999999755 4668999999864221  1122344669999999999999999999999999999999


Q ss_pred             ccCCCCHHhHh
Q 041300          705 FLERGSLAAIL  715 (716)
Q Consensus       705 y~~~GsL~~~l  715 (716)
                      |+++|+|.+++
T Consensus        79 ~~~~~~L~~~l   89 (260)
T PF00069_consen   79 YCPGGSLQDYL   89 (260)
T ss_dssp             EETTEBHHHHH
T ss_pred             ccccccccccc
Confidence            99999999876

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=98.79  E-value=1.5e-08  Score=104.96  Aligned_cols=90  Identities=32%  Similarity=0.465  Sum_probs=73.0

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ..|...+.||+|+||.||+|... +++.||+|++........ ...+++.+|++++++++|||+++++++|.+++..++|
T Consensus        15 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~-~~~~~~~~Ei~~l~~l~h~niv~~~~~~~~~~~~~lv   93 (307)
T cd06607          15 KLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSN-EKWQDIIKEVRFLQQLRHPNTIEYKGCYLREHTAWLV   93 (307)
T ss_pred             hhhhhheeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCcH-HHHHHHHHHHHHHHhCCCCCEEEEEEEEEeCCeEEEE
Confidence            44778889999999999999754 688999999864322221 2346789999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      |||++ |++.+++
T Consensus        94 ~e~~~-g~l~~~~  105 (307)
T cd06607          94 MEYCL-GSASDIL  105 (307)
T ss_pred             HHhhC-CCHHHHH
Confidence            99998 5665543

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=98.79  E-value=9.4e-09  Score=113.22  Aligned_cols=91  Identities=24%  Similarity=0.282  Sum_probs=74.0

Q ss_pred             hcCCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC----
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ----  697 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~----  697 (716)
                      ..+|...++||+|+||+||+++ ..+++.||||++...... . .....+.+|+.++..++|+|+|++++.+...+    
T Consensus        31 ~~rY~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~-~-~~~~~~~~Ei~~l~~~~h~~iv~~~~~~~~~~~~~~  108 (496)
T PTZ00283         31 AKKYWISRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMS-E-ADKNRAQAEVCCLLNCDFFSIVKCHEDFAKKDPRNP  108 (496)
T ss_pred             CCCEEEEEEEecCCCEEEEEEEEcCCCCEEEEEEEecccCC-H-HHHHHHHHHHHHHhcCCCCcEEEeecceecccccCc
Confidence            4689999999999999999996 456899999998753321 1 24467889999999999999999888775432    


Q ss_pred             ----eeeEEEcccCCCCHHhHh
Q 041300          698 ----HSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       698 ----~~~lv~Ey~~~GsL~~~l  715 (716)
                          ..++||||+++|+|.+++
T Consensus       109 ~~~~~i~lV~Ey~~~gsL~~~l  130 (496)
T PTZ00283        109 ENVLMIALVLDYANAGDLRQEI  130 (496)
T ss_pred             ccceEEEEEEeCCCCCcHHHHH
Confidence                368999999999999876

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=98.79  E-value=1.1e-08  Score=104.90  Aligned_cols=90  Identities=20%  Similarity=0.302  Sum_probs=73.5

Q ss_pred             CcccccccCCCceEEEEEEc----CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeCCeee
Q 041300          626 FDAEYCIGNGGHGSVYRAEL----PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHSF  700 (716)
Q Consensus       626 ~~~~~~ig~g~~g~v~~~~~----~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~~~~~  700 (716)
                      |...+.||+|+||.||++..    .++..||||++............+.+.+|++++.++ +|||++++++.+..+...+
T Consensus         2 ~~~~~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~~~~~~   81 (288)
T cd05583           2 FELLRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQTDTKLH   81 (288)
T ss_pred             ceEEEEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcchhhhheeeecCCEEE
Confidence            66778899999999999863    356889999987532222222345688999999999 5999999999999888999


Q ss_pred             EEEcccCCCCHHhHh
Q 041300          701 LVYEFLERGSLAAIL  715 (716)
Q Consensus       701 lv~Ey~~~GsL~~~l  715 (716)
                      +||||+++|+|.+++
T Consensus        82 lv~e~~~~~~L~~~~   96 (288)
T cd05583          82 LILDYVNGGELFTHL   96 (288)
T ss_pred             EEEecCCCCcHHHHH
Confidence            999999999998876

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=98.79  E-value=1.2e-08  Score=104.39  Aligned_cols=88  Identities=22%  Similarity=0.351  Sum_probs=73.3

Q ss_pred             CCcccccccCCCceEEEEEEcC------CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCe
Q 041300          625 DFDAEYCIGNGGHGSVYRAELP------SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQH  698 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~~------~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~  698 (716)
                      +|...+.||+|+||.||+|...      .+..||||++....   .......|.+|+.++..++|||||++++++.+.+.
T Consensus         6 ~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~   82 (283)
T cd05091           6 TVRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKA---EGPLREEFKHEAMMRSRLQHPNIVCLLGVVTKEQP   82 (283)
T ss_pred             HHHHHHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCC---CHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCCc
Confidence            3566778999999999999653      24689999987532   11134678999999999999999999999999999


Q ss_pred             eeEEEcccCCCCHHhHh
Q 041300          699 SFLVYEFLERGSLAAIL  715 (716)
Q Consensus       699 ~~lv~Ey~~~GsL~~~l  715 (716)
                      .++++||+++++|.+++
T Consensus        83 ~~~~~e~~~~~~l~~~l   99 (283)
T cd05091          83 LSMIFSYCSHSDLHEFL   99 (283)
T ss_pred             eEEEEEcCCCCcHHHHH
Confidence            99999999999999876

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=98.79  E-value=1.5e-08  Score=106.65  Aligned_cols=87  Identities=28%  Similarity=0.490  Sum_probs=69.4

Q ss_pred             CcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC-----ee
Q 041300          626 FDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ-----HS  699 (716)
Q Consensus       626 ~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~-----~~  699 (716)
                      |...++||+|+||.||+|.. .++..||||++.....  .......+.+|++++++++|||||++++++...+     ..
T Consensus         2 y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~   79 (338)
T cd07859           2 YKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFE--HVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDI   79 (338)
T ss_pred             eEEEEEEeecCCeEEEEEEECCCCCEEEEEEechhhc--cchhHHHHHHHHHHHHhCCCCCEeeecceEeccCCCCCceE
Confidence            66778999999999999964 4689999999874221  1113456889999999999999999999986532     47


Q ss_pred             eEEEcccCCCCHHhHh
Q 041300          700 FLVYEFLERGSLAAIL  715 (716)
Q Consensus       700 ~lv~Ey~~~GsL~~~l  715 (716)
                      |+|||||. |+|.+++
T Consensus        80 ~lv~e~~~-~~L~~~l   94 (338)
T cd07859          80 YVVFELME-SDLHQVI   94 (338)
T ss_pred             EEEEecCC-CCHHHHH
Confidence            99999996 6888765

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=98.79  E-value=1.5e-08  Score=104.29  Aligned_cols=88  Identities=26%  Similarity=0.489  Sum_probs=75.5

Q ss_pred             cCCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ..|...+.||.|+||.||+|. ..+++.||+|.+.....    ...+.+.+|+++++.++|||++++++++..++..++|
T Consensus        19 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~----~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv   94 (296)
T cd06655          19 KKYTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQ----PKKELIINEILVMKELKNPNIVNFLDSFLVGDELFVV   94 (296)
T ss_pred             ceEEEEEEEecCCCeEEEEEEEcCCCcEEEEEEEecccC----chHHHHHHHHHHHHhcCCCceeeeeeeEecCceEEEE
Confidence            357888899999999999996 45688999999865321    1346788999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      +||+++|+|.+++
T Consensus        95 ~e~~~~~~L~~~~  107 (296)
T cd06655          95 MEYLAGGSLTDVV  107 (296)
T ss_pred             EEecCCCcHHHHH
Confidence            9999999998875

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=98.79  E-value=1.7e-08  Score=103.24  Aligned_cols=87  Identities=30%  Similarity=0.458  Sum_probs=70.3

Q ss_pred             CcccccccCCCceEEEEEEc-----CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC--Ce
Q 041300          626 FDAEYCIGNGGHGSVYRAEL-----PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA--QH  698 (716)
Q Consensus       626 ~~~~~~ig~g~~g~v~~~~~-----~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~--~~  698 (716)
                      |...+.||+|+||+||.+.+     .++..||+|.+.....   ......|.+|++++++++|||++++++++...  ..
T Consensus         6 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~   82 (283)
T cd05080           6 LKKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECG---QQNTSGWKKEINILKTLYHENIVKYKGCCSEQGGKG   82 (283)
T ss_pred             ceeceecccCCCcEEEEeeEccccCCCCceEEEEEeccccC---hHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCce
Confidence            46778899999999987643     3577899999875321   11346789999999999999999999998664  35


Q ss_pred             eeEEEcccCCCCHHhHh
Q 041300          699 SFLVYEFLERGSLAAIL  715 (716)
Q Consensus       699 ~~lv~Ey~~~GsL~~~l  715 (716)
                      .++||||+++|+|.+++
T Consensus        83 ~~lv~e~~~~~~l~~~~   99 (283)
T cd05080          83 LQLIMEYVPLGSLRDYL   99 (283)
T ss_pred             EEEEecCCCCCCHHHHH
Confidence            78999999999999875

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=98.79  E-value=1.5e-08  Score=102.11  Aligned_cols=84  Identities=31%  Similarity=0.639  Sum_probs=71.8

Q ss_pred             ccccCCCceEEEEEEcCC----CCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEcc
Q 041300          630 YCIGNGGHGSVYRAELPS----GEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEF  705 (716)
Q Consensus       630 ~~ig~g~~g~v~~~~~~~----~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  705 (716)
                      +.||+|+||.||+|....    +..||||.+.......   ..+.+.+|++.+.+++|+|++++++++......++||||
T Consensus         1 ~~ig~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~---~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~   77 (262)
T cd00192           1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEE---ERKDFLKEARVMKKLGHPNVVRLLGVCTEEEPLYLVLEY   77 (262)
T ss_pred             CccccCCceEEEEEEEecCCCCCceEEeEeeccccchh---HHHHHHHHHHHHhhcCCCChheeeeeecCCCceEEEEEe
Confidence            368999999999997643    7789999997643211   356799999999999999999999999998899999999


Q ss_pred             cCCCCHHhHhC
Q 041300          706 LERGSLAAILS  716 (716)
Q Consensus       706 ~~~GsL~~~l~  716 (716)
                      +++|+|.++++
T Consensus        78 ~~~~~L~~~l~   88 (262)
T cd00192          78 MEGGDLLDYLR   88 (262)
T ss_pred             ccCCcHHHHHh
Confidence            99999998863

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=98.79  E-value=1.7e-08  Score=101.54  Aligned_cols=86  Identities=31%  Similarity=0.568  Sum_probs=72.6

Q ss_pred             cccccccCCCceEEEEEEcCC-----CCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300          627 DAEYCIGNGGHGSVYRAELPS-----GEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL  701 (716)
Q Consensus       627 ~~~~~ig~g~~g~v~~~~~~~-----~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l  701 (716)
                      ...+.||.|+||.||++...+     +..||+|++.....  . ...+.+.+|++++.+++|+|++++++++.+.+..++
T Consensus         2 ~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~--~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   78 (258)
T smart00219        2 TLGKKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDAD--E-QQIEEFLREARIMRKLDHPNIVKLLGVCTEEEPLMI   78 (258)
T ss_pred             cccceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCC--h-HHHHHHHHHHHHHHhcCCCchheEEEEEcCCCeeEE
Confidence            345789999999999997653     37899999965321  1 134679999999999999999999999999999999


Q ss_pred             EEcccCCCCHHhHh
Q 041300          702 VYEFLERGSLAAIL  715 (716)
Q Consensus       702 v~Ey~~~GsL~~~l  715 (716)
                      ||||+++|+|.+++
T Consensus        79 i~e~~~~~~l~~~~   92 (258)
T smart00219       79 VMEYMEGGDLLDYL   92 (258)
T ss_pred             EEeccCCCCHHHHH
Confidence            99999999999876

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=98.79  E-value=1.8e-08  Score=103.19  Aligned_cols=87  Identities=24%  Similarity=0.494  Sum_probs=72.7

Q ss_pred             CCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          625 DFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      +|+..+.||+|++|.||+|... +|..||||++......   .....+.+|++++++++|+|++++++++...+..++||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~---~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   77 (284)
T cd07836           1 NFKQLEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEE---GTPSTAIREISLMKELKHENIVRLHDVIHTENKLMLVF   77 (284)
T ss_pred             CceEeeeeccCCceEEEEEEECCCCeEEEEEEecccccc---cchHHHHHHHHHHHhhcCCCEeeeeeeEeeCCcEEEEE
Confidence            4677889999999999999764 5889999998753211   12356788999999999999999999999999999999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      ||+++ +|.+++
T Consensus        78 e~~~~-~l~~~~   88 (284)
T cd07836          78 EYMDK-DLKKYM   88 (284)
T ss_pred             ecCCc-cHHHHH
Confidence            99985 787765

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=98.78  E-value=5.6e-09  Score=105.24  Aligned_cols=82  Identities=22%  Similarity=0.438  Sum_probs=67.5

Q ss_pred             cccCCCceEEEEEEcCC--------CCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          631 CIGNGGHGSVYRAELPS--------GEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       631 ~ig~g~~g~v~~~~~~~--------~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      .||+|+||.||+|....        ...||+|.+....    ....++|..|+.+++.++|||+|++++++..++..++|
T Consensus         2 ~lg~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~~----~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv   77 (258)
T cd05078           2 SLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSH----RNYSESFFEAASMMSQLSHKHLVLNYGVCVCGDESIMV   77 (258)
T ss_pred             CCCcccchhheeeeecccccccccccchhhHHhhcchh----HHHHHHHHHHHHHHHhCCCCChhheeeEEEeCCCcEEE
Confidence            68999999999996432        2347888875421    11346788999999999999999999999998999999


Q ss_pred             EcccCCCCHHhHhC
Q 041300          703 YEFLERGSLAAILS  716 (716)
Q Consensus       703 ~Ey~~~GsL~~~l~  716 (716)
                      |||+++|+|.++++
T Consensus        78 ~e~~~~g~L~~~l~   91 (258)
T cd05078          78 QEYVKFGSLDTYLK   91 (258)
T ss_pred             EecCCCCcHHHHHh
Confidence            99999999998873

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=98.78  E-value=1.1e-08  Score=104.82  Aligned_cols=84  Identities=25%  Similarity=0.382  Sum_probs=69.8

Q ss_pred             ccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEccc
Q 041300          628 AEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFL  706 (716)
Q Consensus       628 ~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  706 (716)
                      .++++|+|.||+||-|. .++|+.||||+|.+-+....  ...+.++|+.+++.++||.||.+.-.|++.+..|+|||-+
T Consensus       568 ~devLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp~k--qesqlR~EVaILq~l~HPGiV~le~M~ET~ervFVVMEKl  645 (888)
T KOG4236|consen  568 ADEVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTK--QESQLRNEVAILQNLHHPGIVNLECMFETPERVFVVMEKL  645 (888)
T ss_pred             hHhhccCCcceeeecceecccCceeeeeeeecccCCCc--hHHHHHHHHHHHHhcCCCCeeEEEEeecCCceEEEEehhh
Confidence            46789999999999995 45799999999987543222  3467999999999999999999999999999999999988


Q ss_pred             CCCCHHhH
Q 041300          707 ERGSLAAI  714 (716)
Q Consensus       707 ~~GsL~~~  714 (716)
                      .| +..+.
T Consensus       646 ~G-DMLEM  652 (888)
T KOG4236|consen  646 HG-DMLEM  652 (888)
T ss_pred             cc-hHHHH
Confidence            54 54443

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=98.78  E-value=2.9e-08  Score=100.51  Aligned_cols=91  Identities=22%  Similarity=0.393  Sum_probs=73.2

Q ss_pred             CCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCcc-chhhHHHHHHHHHHHhcCCCCCccccceEEEe--CCeee
Q 041300          625 DFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCD-QIADQKEFLTEVQALTEIRHRNIVKFYGFCSH--AQHSF  700 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~-~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~--~~~~~  700 (716)
                      +|...++||+|+||.||+|.. .++..||+|++....... .......+.+|++++++++||||+++++++..  +...+
T Consensus         3 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   82 (266)
T cd06651           3 NWRRGKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYYGCLRDRAEKTLT   82 (266)
T ss_pred             CccccceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeeeEEEEEEcCCCCEEE
Confidence            578889999999999999964 458899999886432111 11133568899999999999999999998865  35678


Q ss_pred             EEEcccCCCCHHhHh
Q 041300          701 LVYEFLERGSLAAIL  715 (716)
Q Consensus       701 lv~Ey~~~GsL~~~l  715 (716)
                      +|+||+++|+|.+++
T Consensus        83 l~~e~~~~~~L~~~l   97 (266)
T cd06651          83 IFMEYMPGGSVKDQL   97 (266)
T ss_pred             EEEeCCCCCcHHHHH
Confidence            999999999999876

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=98.78  E-value=1.3e-08  Score=102.63  Aligned_cols=80  Identities=25%  Similarity=0.525  Sum_probs=66.0

Q ss_pred             ccccCCCceEEEEEEcCC-C----------CEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCe
Q 041300          630 YCIGNGGHGSVYRAELPS-G----------EVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQH  698 (716)
Q Consensus       630 ~~ig~g~~g~v~~~~~~~-~----------~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~  698 (716)
                      +.||+|+||.||+|...+ +          ..||+|.+....    . ....|.+|+.++++++|||+++++|++.. +.
T Consensus         1 ~~lg~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~----~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~   74 (259)
T cd05037           1 EHLGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDH----R-DSLAFFETASLMSQLSHKHLVKLYGVCVR-DE   74 (259)
T ss_pred             CcccccccceEEEEEEeccCCccccCCccceeeeeeccccch----h-hHHHHHHHHHHHHcCCCcchhheeeEEec-CC
Confidence            368999999999997653 2          247788765421    1 24679999999999999999999999988 77


Q ss_pred             eeEEEcccCCCCHHhHh
Q 041300          699 SFLVYEFLERGSLAAIL  715 (716)
Q Consensus       699 ~~lv~Ey~~~GsL~~~l  715 (716)
                      .++||||+++|+|.+++
T Consensus        75 ~~lv~e~~~~~~L~~~l   91 (259)
T cd05037          75 NIMVEEYVKFGPLDVFL   91 (259)
T ss_pred             cEEEEEcCCCCcHHHHH
Confidence            89999999999999886

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=98.77  E-value=2.4e-08  Score=100.80  Aligned_cols=88  Identities=33%  Similarity=0.502  Sum_probs=76.0

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ++|...+.+|+|+||.||+|... ++..+|+|.+.....    ...+.+.+|++++++++|||++++++++...+..++|
T Consensus         3 ~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~----~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~l~   78 (262)
T cd06613           3 EDYELIQRIGSGTYGDVYKARDIATGELVAIKVIKLEPG----DDFEIIQQEISMLKECRHPNIVAYFGSYLRRDKLWIV   78 (262)
T ss_pred             cceEEEEEecCCCceEEEEeEecCCCCEEEEEEEEcCch----hhHHHHHHHHHHHHhCCCCChhceEEEEEeCCEEEEE
Confidence            46788899999999999999754 578899999875321    1346789999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      |||+++++|.+++
T Consensus        79 ~e~~~~~~l~~~~   91 (262)
T cd06613          79 MEYCGGGSLQDIY   91 (262)
T ss_pred             EeCCCCCcHHHHH
Confidence            9999999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=98.77  E-value=1.2e-08  Score=102.41  Aligned_cols=84  Identities=30%  Similarity=0.605  Sum_probs=71.3

Q ss_pred             cCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      .+|...+.||+|+||.||+|.. .+..||+|.+....      ....|.+|++++.+++|||++++++++.. +..++||
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~-~~~~~~iK~~~~~~------~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-~~~~~v~   77 (254)
T cd05083           6 QKLTLGEIIGEGEFGAVLQGEY-TGQKVAVKNIKCDV------TAQAFLEETAVMTKLHHKNLVRLLGVILH-NGLYIVM   77 (254)
T ss_pred             HHceeeeeeccCCCCceEeccc-CCCceEEEeecCcc------hHHHHHHHHHHHHhCCCCCcCeEEEEEcC-CCcEEEE
Confidence            3577888999999999999975 67789999986421      23578999999999999999999999865 4579999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      ||+++|+|.+++
T Consensus        78 e~~~~~~L~~~l   89 (254)
T cd05083          78 ELMSKGNLVNFL   89 (254)
T ss_pred             ECCCCCCHHHHH
Confidence            999999999876

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=98.77  E-value=2.1e-08  Score=102.46  Aligned_cols=86  Identities=23%  Similarity=0.478  Sum_probs=72.3

Q ss_pred             CcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEc
Q 041300          626 FDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYE  704 (716)
Q Consensus       626 ~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~E  704 (716)
                      |...+.||+|+||.||+|... ++..+|+|.+...   .. ...+.|.+|+++++.++|||++++++++..++..++|||
T Consensus         7 ~~i~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~---~~-~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~~v~e   82 (282)
T cd06643           7 WEIIGELGDGAFGKVYKAQNKETGVLAAAKVIDTK---SE-EELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIE   82 (282)
T ss_pred             HHHHhhcccCCCeEEEEEEECCCCeEEEEEEeCCC---CH-HHHHHHHHHHHHHHHCCCCCeeeEEEEEeeCCEEEEEEE
Confidence            445667999999999999765 4678899998642   11 245678999999999999999999999999999999999


Q ss_pred             ccCCCCHHhHh
Q 041300          705 FLERGSLAAIL  715 (716)
Q Consensus       705 y~~~GsL~~~l  715 (716)
                      |+++|+|.+++
T Consensus        83 ~~~~~~l~~~~   93 (282)
T cd06643          83 FCAGGAVDAVM   93 (282)
T ss_pred             ecCCCcHHHHH
Confidence            99999998765

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=98.76  E-value=2.7e-08  Score=100.95  Aligned_cols=91  Identities=22%  Similarity=0.485  Sum_probs=72.3

Q ss_pred             CCcccccccCCCceEEEEEEcCC--CCEEEEEEccccCCc------cchhhHHHHHHHHHHHhc-CCCCCccccceEEEe
Q 041300          625 DFDAEYCIGNGGHGSVYRAELPS--GEVVAVKKFHSSIPC------DQIADQKEFLTEVQALTE-IRHRNIVKFYGFCSH  695 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~~~--~~~vavK~l~~~~~~------~~~~~~~~~~~ei~~l~~-l~H~niv~l~g~~~~  695 (716)
                      +|...+.||+|+||.||+|....  +..+|||.+......      .......++.+|+.++.+ ++|||++++++++..
T Consensus         1 ~y~~~~~ig~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~   80 (269)
T cd08528           1 EYAVLEHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKTFLE   80 (269)
T ss_pred             CchhhhhhcCCCCceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEEeeEcc
Confidence            36677889999999999997654  678999988642211      111133567889988865 799999999999999


Q ss_pred             CCeeeEEEcccCCCCHHhHh
Q 041300          696 AQHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       696 ~~~~~lv~Ey~~~GsL~~~l  715 (716)
                      ++..++||||+++|+|.+++
T Consensus        81 ~~~~~lv~e~~~~~~l~~~l  100 (269)
T cd08528          81 NDRLYIVMDLIEGAPLGEHF  100 (269)
T ss_pred             CCeEEEEEecCCCCcHHHHH
Confidence            99999999999999998765

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=98.76  E-value=2.2e-08  Score=101.16  Aligned_cols=83  Identities=24%  Similarity=0.496  Sum_probs=66.7

Q ss_pred             ccccCCCceEEEEEEcC----CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEe-CCeeeEEEc
Q 041300          630 YCIGNGGHGSVYRAELP----SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSH-AQHSFLVYE  704 (716)
Q Consensus       630 ~~ig~g~~g~v~~~~~~----~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~-~~~~~lv~E  704 (716)
                      +.||+|+||.||+|...    .+..||+|++....   .....+.|.+|+.+++.++|||+++++++|.. ++..++|||
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~---~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e   77 (262)
T cd05058           1 RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRIT---DLEEVEQFLKEGIIMKDFSHPNVLSLLGICLPSEGSPLVVLP   77 (262)
T ss_pred             CcccccCCceEEEEEEecCCCceEEEEEEecCccC---CHHHHHHHHHHHHHHccCCCCCcceEEEEeecCCCCcEEEEe
Confidence            36899999999999643    23579999985421   11234678999999999999999999998864 456799999


Q ss_pred             ccCCCCHHhHh
Q 041300          705 FLERGSLAAIL  715 (716)
Q Consensus       705 y~~~GsL~~~l  715 (716)
                      |+.+|+|.+++
T Consensus        78 ~~~~~~L~~~~   88 (262)
T cd05058          78 YMKHGDLRNFI   88 (262)
T ss_pred             cCCCCCHHHHH
Confidence            99999999886

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=98.76  E-value=2.8e-08  Score=100.40  Aligned_cols=89  Identities=27%  Similarity=0.544  Sum_probs=72.2

Q ss_pred             CCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEe--CCeeeE
Q 041300          625 DFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSH--AQHSFL  701 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~--~~~~~l  701 (716)
                      +|...+.+|.|+||.||++.. .++..||+|++...... . ...+.+.+|++++++++|+|++++++++..  +...++
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~-~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   78 (265)
T cd08217           1 DYEVLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMT-E-KEKQQLVSEVNILRELKHPNIVRYYDRIIDRSNQTLYI   78 (265)
T ss_pred             CceeeeeeccCCCeEEEEeeecCCCCEEEEEEEecccCC-H-HHHHHHHHHHHHHHhcCCCccceeeeeeecCCCCEEEE
Confidence            366778899999999999964 46789999998753221 1 234678999999999999999999998864  345799


Q ss_pred             EEcccCCCCHHhHh
Q 041300          702 VYEFLERGSLAAIL  715 (716)
Q Consensus       702 v~Ey~~~GsL~~~l  715 (716)
                      ||||+++|+|.+++
T Consensus        79 ~~e~~~~~~L~~~l   92 (265)
T cd08217          79 VMEYCEGGDLAQLI   92 (265)
T ss_pred             EehhccCCCHHHHH
Confidence            99999999998876

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.76  E-value=5.5e-09  Score=119.97  Aligned_cols=129  Identities=23%  Similarity=0.208  Sum_probs=99.9

Q ss_pred             CCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCc--CcccCCccccCCCCCCEEEcccccCccCCCccccCCCCC
Q 041300           73 SSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQ--LSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSI  150 (716)
Q Consensus        73 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  150 (716)
                      ......+...+-+|.+..+ +... ..++|++|-+..|.  +....++.|..++.|++|||++|.=-+.+|..++.+-+|
T Consensus       520 ~~~~~~rr~s~~~~~~~~~-~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L  597 (889)
T KOG4658|consen  520 KSWNSVRRMSLMNNKIEHI-AGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL  597 (889)
T ss_pred             cchhheeEEEEeccchhhc-cCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhh
Confidence            3345677777777777532 2222 33479999999996  554555568899999999999988777899999999999


Q ss_pred             ceeecccccccCCCCccccCCcCCcEEEeecccccccccccccCCCCCceeeCC
Q 041300          151 EELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLS  204 (716)
Q Consensus       151 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~  204 (716)
                      ++|+|++..++ .+|..+.+|+.|.+|++..+.-...++.....+..|++|.+.
T Consensus       598 ryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~  650 (889)
T KOG4658|consen  598 RYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLP  650 (889)
T ss_pred             hcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEee
Confidence            99999999998 789999999999999999887554555555567777766653

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=98.76  E-value=1.3e-08  Score=111.72  Aligned_cols=87  Identities=23%  Similarity=0.397  Sum_probs=70.6

Q ss_pred             CCcccccccCCCceEEEEEEcCCC-CEEEEEEccccCCccchhhHHHHHHHHHHHhcCC-CCCccccceE-EEe---C--
Q 041300          625 DFDAEYCIGNGGHGSVYRAELPSG-EVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR-HRNIVKFYGF-CSH---A--  696 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~~~~-~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~-H~niv~l~g~-~~~---~--  696 (716)
                      ....+++|.+|||+.||.+....+ ..+|+|++-..   ++ .+.+...+||++|+.++ |+|||.+++. ...   .  
T Consensus        38 ~v~V~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~---de-~~L~~v~~EI~~MK~L~gh~nIV~yidss~~~~~~~~~  113 (738)
T KOG1989|consen   38 RVTVEKVLAEGGFAQVYLAQDVKGGKKYALKRMYVN---DE-EALNAVKREIDIMKLLSGHKNIVSYIDSSAINRSSNNG  113 (738)
T ss_pred             EEEEEEEEccCCcEEEEEEEecCCCceeeeeeeecC---CH-HHHHHHHHHHHHHHHhcCCCceeeEeccccccccCCCc
Confidence            456788999999999999976554 89999998642   22 25678999999999997 9999999993 222   1  


Q ss_pred             -CeeeEEEcccCCCCHHhHh
Q 041300          697 -QHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       697 -~~~~lv~Ey~~~GsL~~~l  715 (716)
                       -+++|.||||++|.|-|++
T Consensus       114 ~~EvllLmEyC~gg~Lvd~m  133 (738)
T KOG1989|consen  114 VWEVLLLMEYCKGGSLVDFM  133 (738)
T ss_pred             eeEEEeehhhccCCcHHHHH
Confidence             2578999999999999986

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=98.75  E-value=2.4e-08  Score=100.48  Aligned_cols=82  Identities=32%  Similarity=0.473  Sum_probs=67.4

Q ss_pred             ccccCCCceEEEEEEcCC----CCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEcc
Q 041300          630 YCIGNGGHGSVYRAELPS----GEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEF  705 (716)
Q Consensus       630 ~~ig~g~~g~v~~~~~~~----~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  705 (716)
                      ++||+|+||.||+|.+..    +..||+|.+......   ...+++.+|++++++++|+|+|++++++. .+..++||||
T Consensus         1 ~~ig~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~---~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~v~e~   76 (257)
T cd05060           1 KELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIA---AGKKEFLREASVMAQLDHPCIVRLIGVCK-GEPLMLVMEL   76 (257)
T ss_pred             CccCccCceeEEEeEeeccCCCcceEEEEecccccch---HHHHHHHHHHHHHHhcCCCCeeeEEEEEc-CCceEEEEEe
Confidence            368999999999996532    268999998754321   24467999999999999999999999875 5568999999


Q ss_pred             cCCCCHHhHh
Q 041300          706 LERGSLAAIL  715 (716)
Q Consensus       706 ~~~GsL~~~l  715 (716)
                      +++|+|.+++
T Consensus        77 ~~~~~L~~~l   86 (257)
T cd05060          77 APLGPLLKYL   86 (257)
T ss_pred             CCCCcHHHHH
Confidence            9999999987

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=98.75  E-value=1.9e-08  Score=103.01  Aligned_cols=88  Identities=33%  Similarity=0.520  Sum_probs=72.4

Q ss_pred             CCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          625 DFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      +|...+.||+|+||.||+|... ++..||||++........  ....+.+|++++++++|||++++++++.+++..++||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~--~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   78 (284)
T cd07860           1 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEG--VPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVF   78 (284)
T ss_pred             CceeeeeecCCCceEEEEEEECCCCCEEEEEEccccccccc--cchHHHHHHHHHHhcCCCCCcchhhhcccCCcEEEEe
Confidence            3677889999999999999654 688999999865321111  2356889999999999999999999999999999999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      ||+. ++|.+++
T Consensus        79 e~~~-~~l~~~~   89 (284)
T cd07860          79 EFLH-QDLKKFM   89 (284)
T ss_pred             eccc-cCHHHHH
Confidence            9996 5787765

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=98.75  E-value=2.2e-08  Score=100.68  Aligned_cols=85  Identities=29%  Similarity=0.534  Sum_probs=71.7

Q ss_pred             cCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEe-CCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSH-AQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~-~~~~~lv  702 (716)
                      .+|...++||+|+||.||++.. .+..||+|.++...      ..+.|.+|+.++++++|+|++++++++.. ++..++|
T Consensus         6 ~~~~~~~~lg~g~~~~v~~~~~-~~~~~~~k~~~~~~------~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv   78 (256)
T cd05082           6 KELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDA------TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIV   78 (256)
T ss_pred             HhCeeeeeecccCCCeEEEEEE-cCCcEEEEEeCCCc------hHHHHHHHHHHHHhCCCCCeeeEEEEEEcCCCceEEE
Confidence            3577888999999999999976 47789999886421      24579999999999999999999998654 4568999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      |||+++|+|.+++
T Consensus        79 ~e~~~~~~L~~~~   91 (256)
T cd05082          79 TEYMAKGSLVDYL   91 (256)
T ss_pred             EECCCCCcHHHHH
Confidence            9999999999876

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=98.75  E-value=2.8e-08  Score=102.15  Aligned_cols=89  Identities=20%  Similarity=0.300  Sum_probs=73.1

Q ss_pred             hcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL  701 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l  701 (716)
                      +.+|...+.||+|+||.||+|.. .++..||+|++.......   ....+.+|++++++++|+||+++++++..++..++
T Consensus         4 ~~~y~~~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~---~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~l   80 (291)
T cd07870           4 ATSYLNLEKLGEGSYATVYKGISRINGQLVALKVISMKTEEG---VPFTAIREASLLKGLKHANIVLLHDIIHTKETLTF   80 (291)
T ss_pred             cceeEEEEEEEecCCEEEEEEEEcCCCcEEEEEEecccCcCC---CcHHHHHHHHHHHhcCCCCEeEEEEEEecCCeEEE
Confidence            46788899999999999999964 468899999986532111   23467889999999999999999999999999999


Q ss_pred             EEcccCCCCHHhHh
Q 041300          702 VYEFLERGSLAAIL  715 (716)
Q Consensus       702 v~Ey~~~GsL~~~l  715 (716)
                      ||||+. |++.+++
T Consensus        81 v~e~~~-~~l~~~~   93 (291)
T cd07870          81 VFEYMH-TDLAQYM   93 (291)
T ss_pred             EEeccc-CCHHHHH
Confidence            999996 6776553

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=98.74  E-value=1.8e-08  Score=101.72  Aligned_cols=83  Identities=28%  Similarity=0.432  Sum_probs=70.2

Q ss_pred             ccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEcccCCCC
Q 041300          632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGS  710 (716)
Q Consensus       632 ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~Gs  710 (716)
                      ||+|+||.||++... ++..||+|++....... ....+.+.+|++++++++|||++++++.+..+...|+||||+++|+
T Consensus         1 lg~g~~~~vy~~~~~~~~~~~~~k~~~~~~~~~-~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   79 (265)
T cd05579           1 ISKGAYGRVFLAKKKSTGDIYAIKVIKKADMIR-KNQVDQVLTERDILSQAQSPYVVKLYYSFQGKKNLYLVMEYLPGGD   79 (265)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEecchhhhh-hhHHHHHHHHHHHHHhCCCcchhHHHHheecCcEEEEEEecCCCCc
Confidence            689999999999765 48999999987532211 1234678999999999999999999999999999999999999999


Q ss_pred             HHhHh
Q 041300          711 LAAIL  715 (716)
Q Consensus       711 L~~~l  715 (716)
                      |.+++
T Consensus        80 L~~~l   84 (265)
T cd05579          80 LASLL   84 (265)
T ss_pred             HHHHH
Confidence            98876

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=98.74  E-value=2.3e-08  Score=102.26  Aligned_cols=87  Identities=22%  Similarity=0.426  Sum_probs=69.2

Q ss_pred             CCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHH-HhcCCCCCccccceEEEeCCeeeEE
Q 041300          625 DFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQA-LTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~-l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      +|...+.||+|+||.||++... +|..||+|+++......   ...++..|+.. ++..+|||+|++++++..++..++|
T Consensus         2 ~~~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~---~~~~~~~e~~~~~~~~~~~~iv~~~~~~~~~~~~~lv   78 (283)
T cd06617           2 DLEVIEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQ---EQKRLLMDLDISMRSVDCPYTVTFYGALFREGDVWIC   78 (283)
T ss_pred             CceEEEEecccCCeEEEEEEEcCCCcEEEEEEEecCCCcH---HHHHHHHHHHHHHHHcCCCCeeeeeEEEecCCcEEEE
Confidence            5778889999999999999654 68999999987532111   23456667765 6667999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      ||||+ |+|.+++
T Consensus        79 ~e~~~-~~l~~~l   90 (283)
T cd06617          79 MEVMD-TSLDKFY   90 (283)
T ss_pred             hhhhc-ccHHHHH
Confidence            99997 6777654

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=98.74  E-value=1.5e-08  Score=100.11  Aligned_cols=88  Identities=28%  Similarity=0.489  Sum_probs=70.4

Q ss_pred             CCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCC-ccccceEEEeCC-----
Q 041300          625 DFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRN-IVKFYGFCSHAQ-----  697 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~n-iv~l~g~~~~~~-----  697 (716)
                      .|...++||+|+||+||+|+ ..+|..||+|++...... +. ....-.+|+.++.+++|+| ||++++++.+.+     
T Consensus        12 ~~~~~eklGeGtyg~Vykar~~~~g~~VALKkirl~~~~-EG-~P~taiREisllk~L~~~~~iv~L~dv~~~~~~~~~~   89 (323)
T KOG0594|consen   12 DYEKVEKLGEGTYGVVYKARSKRTGKFVALKKIRLEFEE-EG-VPSTAIREISLLKRLSHANHIVRLHDVIHTSNNHRGI   89 (323)
T ss_pred             HHHHHHHhCCCCceEEEEEEEecCCCEEEEEEEeccccc-cC-CCchhhHHHHHHHHhCCCcceEEEEeeeeeccccccc
Confidence            45666779999999999995 456899999999764221 11 1233579999999999999 999999998877     


Q ss_pred             -eeeEEEcccCCCCHHhHh
Q 041300          698 -HSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       698 -~~~lv~Ey~~~GsL~~~l  715 (716)
                       ..++|+||++. +|.+++
T Consensus        90 ~~l~lvfe~~d~-DL~~ym  107 (323)
T KOG0594|consen   90 GKLYLVFEFLDR-DLKKYM  107 (323)
T ss_pred             ceEEEEEEeecc-cHHHHH
Confidence             78899999987 777765

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=98.74  E-value=2.2e-08  Score=104.90  Aligned_cols=83  Identities=20%  Similarity=0.255  Sum_probs=65.5

Q ss_pred             ccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC---CCCCccccceEEEeCCeeeEEEcccC
Q 041300          632 IGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI---RHRNIVKFYGFCSHAQHSFLVYEFLE  707 (716)
Q Consensus       632 ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l---~H~niv~l~g~~~~~~~~~lv~Ey~~  707 (716)
                      ||+|+||+||+|+. .+++.||||++......... ....+..|..++.+.   +||+|+++++++...+..|+||||++
T Consensus         1 lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~-~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~~~~~~lv~e~~~   79 (330)
T cd05586           1 IGKGTFGQVYQVRKKDTRRIYAMKVLSKKEIVAKK-EVAHTIGERNILVRTLLDESPFIVGLKFSFQTDSDLYLVTDYMS   79 (330)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEEeHHHHhhhh-HHHHHHHHHHHHHHhccCCCCcCcceEEEEecCCeEEEEEcCCC
Confidence            69999999999964 45889999998642211111 233456677777665   69999999999999999999999999


Q ss_pred             CCCHHhHh
Q 041300          708 RGSLAAIL  715 (716)
Q Consensus       708 ~GsL~~~l  715 (716)
                      +|+|.+++
T Consensus        80 ~g~L~~~l   87 (330)
T cd05586          80 GGELFWHL   87 (330)
T ss_pred             CChHHHHH
Confidence            99998775

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=98.73  E-value=3e-08  Score=99.79  Aligned_cols=89  Identities=24%  Similarity=0.317  Sum_probs=71.9

Q ss_pred             CCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEe-CCeeeEE
Q 041300          625 DFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSH-AQHSFLV  702 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~-~~~~~lv  702 (716)
                      +|...+.||+|+||.||++... +++.||+|++.......  ...+.+.+|++++++++|+|++++++.+.. ....++|
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv   78 (257)
T cd08223           1 AYCFVRVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNASR--RERKAAEQEAQLLSQLKHPNIVAYRESWEGEDGLLYIV   78 (257)
T ss_pred             CceEEEEecCCCCeEEEEEEEcCCCcEEEEEEEehhhcCH--HHHHHHHHHHHHHHhCCCCCeeeeeeeecCCCCEEEEE
Confidence            4677889999999999999644 57889999986532211  134568899999999999999999998764 3467999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      |||+++|+|.+++
T Consensus        79 ~e~~~~~~l~~~l   91 (257)
T cd08223          79 MGFCEGGDLYHKL   91 (257)
T ss_pred             ecccCCCcHHHHH
Confidence            9999999999876

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=98.73  E-value=2.3e-08  Score=103.07  Aligned_cols=86  Identities=29%  Similarity=0.446  Sum_probs=72.0

Q ss_pred             CcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEc
Q 041300          626 FDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYE  704 (716)
Q Consensus       626 ~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~E  704 (716)
                      |.....||+|+||.||++.. .++..||+|++....   . ...+.+.+|+.++..++|||++++++++..++..++|||
T Consensus        23 ~~~~~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~---~-~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~iv~e   98 (297)
T cd06659          23 LENYIKIGEGSTGIVCIAREKHSGRQVAVKMMDLRK---Q-QRRELLFNEVVIMRDYQHQNVVEMYKSYLVGEELWVLME   98 (297)
T ss_pred             HHhhhhcCCCCceeEEEEEEcCCCCEEEEEEEEecc---c-chHHHHHHHHHHHHhCCCCchhhhhhheeeCCeEEEEEe
Confidence            33445799999999999964 468899999986422   1 134568899999999999999999999999999999999


Q ss_pred             ccCCCCHHhHh
Q 041300          705 FLERGSLAAIL  715 (716)
Q Consensus       705 y~~~GsL~~~l  715 (716)
                      |+++|+|.+++
T Consensus        99 ~~~~~~L~~~~  109 (297)
T cd06659          99 FLQGGALTDIV  109 (297)
T ss_pred             cCCCCCHHHHH
Confidence            99999998764

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.73  E-value=1.1e-08  Score=70.34  Aligned_cols=42  Identities=38%  Similarity=0.911  Sum_probs=29.7

Q ss_pred             hHHHHHHHHHHhhcccCCCCCCCCCcCCCCCCCCCCCCcceeeeeeC
Q 041300            2 NEEADALLKWKASLQSHNQSLLPSWTNASTNVSSKISPCAWYGISCN   48 (716)
Q Consensus         2 ~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~c~w~gv~c~   48 (716)
                      ++|++||++||+++..++.+.+.+|....     ..+||.|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~-----~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNPSS-----DSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--TT-------S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCCcC-----CCCCeeeccEEeC
Confidence            57999999999999556778899996541     1289999999996

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=98.73  E-value=3.6e-08  Score=101.48  Aligned_cols=89  Identities=26%  Similarity=0.438  Sum_probs=73.1

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ++|...+.||+|++|.||+|... +++.||+|.+........  ....+.+|++++++++|||++++++++..++..|+|
T Consensus         2 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   79 (294)
T PLN00009          2 DQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEG--VPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLV   79 (294)
T ss_pred             CceEEEEEecCCCCEEEEEEEecCCCcEEEEEehhhcccccc--chHHHHHHHHHHHhccCCCEeeEEEEEecCCeEEEE
Confidence            35778889999999999999754 688999999865322111  235688999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      |||++ ++|.+++
T Consensus        80 ~e~~~-~~l~~~~   91 (294)
T PLN00009         80 FEYLD-LDLKKHM   91 (294)
T ss_pred             Eeccc-ccHHHHH
Confidence            99996 4776654

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=98.73  E-value=4.3e-08  Score=102.05  Aligned_cols=88  Identities=32%  Similarity=0.474  Sum_probs=71.9

Q ss_pred             CcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEc
Q 041300          626 FDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYE  704 (716)
Q Consensus       626 ~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~E  704 (716)
                      |...+.||+|+||.||+|.. .++..||+|++........ .....+.+|++++++++|||+|++++++.+++..++|||
T Consensus        27 f~~~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~~~-~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e  105 (317)
T cd06635          27 FTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSN-EKWQDIIKEVKFLQRIKHPNSIEYKGCYLREHTAWLVME  105 (317)
T ss_pred             hhhhheeccCCCeEEEEEEEcCCCcEEEEEEEecCCCCch-HHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCeEEEEEe
Confidence            66778899999999999975 4688999999875322222 134578999999999999999999999999999999999


Q ss_pred             ccCCCCHHhHh
Q 041300          705 FLERGSLAAIL  715 (716)
Q Consensus       705 y~~~GsL~~~l  715 (716)
                      |++ |++.+.+
T Consensus       106 ~~~-g~l~~~~  115 (317)
T cd06635         106 YCL-GSASDLL  115 (317)
T ss_pred             CCC-CCHHHHH
Confidence            997 4776654

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>PHA03212 serine/threonine kinase US3; Provisional

Probab=98.73  E-value=3.3e-08  Score=105.75  Aligned_cols=81  Identities=20%  Similarity=0.224  Sum_probs=69.9

Q ss_pred             cCCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      .+|...+.||+|+||.||++. ..+++.||+|+...          ..+.+|++++++++|||||++++++......++|
T Consensus        92 ~~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~~----------~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~lv  161 (391)
T PHA03212         92 AGFSILETFTPGAEGFAFACIDNKTCEHVVIKAGQR----------GGTATEAHILRAINHPSIIQLKGTFTYNKFTCLI  161 (391)
T ss_pred             CCcEEEEEEcCCCCeEEEEEEECCCCCEEEEechhh----------hhhHHHHHHHHhCCCCCCCCEeEEEEECCeeEEE
Confidence            569999999999999999995 44688999996432          3467899999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      +||+. |+|.+++
T Consensus       162 ~e~~~-~~L~~~l  173 (391)
T PHA03212        162 LPRYK-TDLYCYL  173 (391)
T ss_pred             EecCC-CCHHHHH
Confidence            99986 6887765

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=98.72  E-value=4.7e-08  Score=98.82  Aligned_cols=92  Identities=24%  Similarity=0.408  Sum_probs=73.5

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCc-cchhhHHHHHHHHHHHhcCCCCCccccceEEEeC--Cee
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPC-DQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA--QHS  699 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~-~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~--~~~  699 (716)
                      .+|...+.||+|+||.||+|.. .++..||+|.+...... ........+.+|++++++++|+||+++++++.+.  ...
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (264)
T cd06653           2 VNWRLGKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGCLRDPEEKKL   81 (264)
T ss_pred             CceeeeeeEccCCCeEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcceEEEEEEcCCCCEE
Confidence            3678889999999999999964 45889999987532111 1112345789999999999999999999998764  457


Q ss_pred             eEEEcccCCCCHHhHh
Q 041300          700 FLVYEFLERGSLAAIL  715 (716)
Q Consensus       700 ~lv~Ey~~~GsL~~~l  715 (716)
                      ++|+||+++|+|.+++
T Consensus        82 ~~v~e~~~~~~L~~~~   97 (264)
T cd06653          82 SIFVEYMPGGSIKDQL   97 (264)
T ss_pred             EEEEEeCCCCcHHHHH
Confidence            8999999999998875

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=98.72  E-value=4.3e-08  Score=98.52  Aligned_cols=88  Identities=30%  Similarity=0.477  Sum_probs=75.3

Q ss_pred             CcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC--CeeeEE
Q 041300          626 FDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA--QHSFLV  702 (716)
Q Consensus       626 ~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~--~~~~lv  702 (716)
                      |...+.||+|++|.||+|... ++..|++|++......  ....+.+.+|++++++++|+|++++++.+...  +..++|
T Consensus         2 ~~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv   79 (260)
T cd06606           2 WTRGELLGRGSFGSVYLALDKDTGELMAVKSVELSGDS--EEELEALEREIRILSSLQHPNIVRYYGSERDEEKNTLNIF   79 (260)
T ss_pred             ceeeeEeeecCceEEEEEEECCCCcEEEEEEeeccccc--hHHHHHHHHHHHHHHHcCCCCEeeEEEEEecCCCCeEEEE
Confidence            667788999999999999765 6889999998764321  12456799999999999999999999999888  789999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      +||+++++|.+++
T Consensus        80 ~e~~~~~~L~~~~   92 (260)
T cd06606          80 LEYVSGGSLSSLL   92 (260)
T ss_pred             EEecCCCcHHHHH
Confidence            9999999999876

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=98.72  E-value=2.1e-08  Score=108.70  Aligned_cols=95  Identities=17%  Similarity=0.327  Sum_probs=67.6

Q ss_pred             hhcCCcccccccCCCceEEEEEEc-----------------CCCCEEEEEEccccCCccch----------hhHHHHHHH
Q 041300          622 ETNDFDAEYCIGNGGHGSVYRAEL-----------------PSGEVVAVKKFHSSIPCDQI----------ADQKEFLTE  674 (716)
Q Consensus       622 ~~~~~~~~~~ig~g~~g~v~~~~~-----------------~~~~~vavK~l~~~~~~~~~----------~~~~~~~~e  674 (716)
                      ..++|...++||+|+||.||+|..                 ..++.||||++.........          ...+.+..|
T Consensus       143 ~~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~~~e~~~vE  222 (507)
T PLN03224        143 SSDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKTGTLAKGSAETGMVE  222 (507)
T ss_pred             cccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhhhhhhhcccchhHHH
Confidence            456899999999999999999953                 23567999998642110000          011234457


Q ss_pred             HHHHhcCCCCCc-----cccceEEEe--------CCeeeEEEcccCCCCHHhHhC
Q 041300          675 VQALTEIRHRNI-----VKFYGFCSH--------AQHSFLVYEFLERGSLAAILS  716 (716)
Q Consensus       675 i~~l~~l~H~ni-----v~l~g~~~~--------~~~~~lv~Ey~~~GsL~~~l~  716 (716)
                      +.++.+++|.++     +++++||..        .+..++|||||++|+|.++++
T Consensus       223 ~~~l~~l~~~~l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~  277 (507)
T PLN03224        223 AYMCAKIKRNPIAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALD  277 (507)
T ss_pred             HHHHHHhhcccchhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHh
Confidence            777778876655     678888754        356899999999999999874

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=98.72  E-value=2.5e-08  Score=102.48  Aligned_cols=83  Identities=31%  Similarity=0.444  Sum_probs=70.9

Q ss_pred             cccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEcccC
Q 041300          629 EYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLE  707 (716)
Q Consensus       629 ~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~  707 (716)
                      ...||+|+||.||++.. .++..||||.+....    ....+.+.+|+.+++.++|+|++++++++..++..++||||++
T Consensus        27 ~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~----~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~lv~e~~~  102 (292)
T cd06658          27 FIKIGEGSTGIVCIATEKHTGKQVAVKKMDLRK----QQRRELLFNEVVIMRDYHHENVVDMYNSYLVGDELWVVMEFLE  102 (292)
T ss_pred             hhcccCCCCeEEEEEEECCCCCEEEEEEEecch----HHHHHHHHHHHHHHHhCCCCcHHHHHHheecCCeEEEEEeCCC
Confidence            45699999999999964 468899999986421    1234678999999999999999999999999999999999999


Q ss_pred             CCCHHhHh
Q 041300          708 RGSLAAIL  715 (716)
Q Consensus       708 ~GsL~~~l  715 (716)
                      +|+|.+++
T Consensus       103 ~~~L~~~~  110 (292)
T cd06658         103 GGALTDIV  110 (292)
T ss_pred             CCcHHHHH
Confidence            99998875

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=98.72  E-value=2.9e-08  Score=101.28  Aligned_cols=88  Identities=23%  Similarity=0.345  Sum_probs=69.0

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCC----EEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCe
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGE----VVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQH  698 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~----~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~  698 (716)
                      .+|...+.||+|+||+||+|.+. ++.    .||+|.+....   ......++..|+..+++++|||||+++|++. +..
T Consensus         7 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~~---~~~~~~~~~~~~~~l~~l~h~~iv~~~~~~~-~~~   82 (279)
T cd05111           7 TELRKLKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRS---GRQTFQEITDHMLAMGSLDHAYIVRLLGICP-GAS   82 (279)
T ss_pred             hhceeccccCccCCcceEEEEEcCCCCceeeEEEEeeccccc---chHHHHHHHHHHHHHhcCCCCCcceEEEEEC-CCc
Confidence            35777889999999999999753 344    47778775321   1113457888888999999999999999875 456


Q ss_pred             eeEEEcccCCCCHHhHh
Q 041300          699 SFLVYEFLERGSLAAIL  715 (716)
Q Consensus       699 ~~lv~Ey~~~GsL~~~l  715 (716)
                      .++|+||+++|+|.+++
T Consensus        83 ~~~i~e~~~~gsL~~~l   99 (279)
T cd05111          83 LQLVTQLSPLGSLLDHV   99 (279)
T ss_pred             cEEEEEeCCCCcHHHHH
Confidence            78999999999999887

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=98.72  E-value=2.8e-08  Score=101.90  Aligned_cols=88  Identities=32%  Similarity=0.522  Sum_probs=73.7

Q ss_pred             CCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          625 DFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      +|+..+.||+|+||.||+|... ++..||||+++......  ...+.+.+|++++++++|+|++++++++..++..++||
T Consensus         2 ~y~~~~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~   79 (288)
T cd07833           2 KYEVLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDE--DVKKTALREVKVLRQLRHENIVNLKEAFRRKGRLYLVF   79 (288)
T ss_pred             ceeEEEEecccCCeeEEEEEeCCCCcEEEEehhhhhcccc--cchhHHHHHHHHHHhcCCCCeeehhheEEECCEEEEEE
Confidence            5778889999999999999765 57899999987532211  13467899999999999999999999999999999999


Q ss_pred             cccCCCCHHhH
Q 041300          704 EFLERGSLAAI  714 (716)
Q Consensus       704 Ey~~~GsL~~~  714 (716)
                      ||++++.+..+
T Consensus        80 e~~~~~~l~~~   90 (288)
T cd07833          80 EYVERTLLELL   90 (288)
T ss_pred             ecCCCCHHHHH
Confidence            99999877654

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=98.72  E-value=6e-09  Score=100.39  Aligned_cols=83  Identities=23%  Similarity=0.392  Sum_probs=71.7

Q ss_pred             cccccCCCceEEEEE-EcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeCCeeeEEEccc
Q 041300          629 EYCIGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHSFLVYEFL  706 (716)
Q Consensus       629 ~~~ig~g~~g~v~~~-~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~~~~~lv~Ey~  706 (716)
                      ++++|+|+||.|-.+ .+.+|..+|||++.+..   .. .+....+|++++.++ .|+||+.+++++++++..|||||-|
T Consensus        83 ~e~LGeGAyasVqtcv~i~t~~EYAVKiidKq~---gH-sR~RvfREVe~f~~Cqgh~nilqLiefFEdd~~FYLVfEKm  158 (463)
T KOG0607|consen   83 SELLGEGAYASVQTCVSIQTGKEYAVKIIDKQP---GH-SRSRVFREVETFYQCQGHKNILQLIEFFEDDTRFYLVFEKM  158 (463)
T ss_pred             HHHhcCccceeeeeeeeeccchhhhhhhhhcCC---ch-HHHHHHHHHHHHHHhcCCccHHHHHHHhcccceEEEEEecc
Confidence            357999999999988 46789999999998742   11 456678999999988 5999999999999999999999999


Q ss_pred             CCCCHHhHh
Q 041300          707 ERGSLAAIL  715 (716)
Q Consensus       707 ~~GsL~~~l  715 (716)
                      .||.|..+|
T Consensus       159 ~GGplLshI  167 (463)
T KOG0607|consen  159 RGGPLLSHI  167 (463)
T ss_pred             cCchHHHHH
Confidence            999998776

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=98.71  E-value=3.7e-08  Score=103.13  Aligned_cols=84  Identities=26%  Similarity=0.358  Sum_probs=69.9

Q ss_pred             ccccCC--CceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEccc
Q 041300          630 YCIGNG--GHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFL  706 (716)
Q Consensus       630 ~~ig~g--~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  706 (716)
                      ..||+|  +||+||++.. .+|+.||||++.......  ...+.+.+|+.+++.++|||||++++++..++..++|+||+
T Consensus         4 ~~ig~g~~~~~~v~~a~~~~~~~~vaiK~~~~~~~~~--~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~~~~~v~e~~   81 (328)
T cd08226           4 VEIGRGFCNLTSVYLARHTPTGTLVTVRITDLENCTE--EHLKALQNEVVLSHFFRHPNIMTSWTVFTTGSWLWVISPFM   81 (328)
T ss_pred             HHhCCcccCceeEEEEEEcCCCcEEEEEEeccccCCH--HHHHHHHHHHHHHHhCCCCCcceEeeeEecCCceEEEEecc
Confidence            346666  8999999964 478999999987532221  13467899999999999999999999999999999999999


Q ss_pred             CCCCHHhHh
Q 041300          707 ERGSLAAIL  715 (716)
Q Consensus       707 ~~GsL~~~l  715 (716)
                      .+|++.+++
T Consensus        82 ~~~~l~~~l   90 (328)
T cd08226          82 AYGSANSLL   90 (328)
T ss_pred             cCCCHHHHH
Confidence            999999876

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=98.71  E-value=5.9e-08  Score=97.35  Aligned_cols=88  Identities=28%  Similarity=0.502  Sum_probs=75.2

Q ss_pred             CcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEc
Q 041300          626 FDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYE  704 (716)
Q Consensus       626 ~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~E  704 (716)
                      |...+.||+|++|.||++... ++..||+|.+......  ......+.+|++++++++|||++++++++..++..++|||
T Consensus         2 y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e   79 (254)
T cd06627           2 YQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIK--EEALKSIMQEIDLLKNLKHPNIVKYIGSIETSDSLYIILE   79 (254)
T ss_pred             ceeeeEEcccCCeEEEEEEEcCCCcEEEEEEecccccC--HHHHHHHHHHHHHHHhCCCCCccEEEEEEEeCCEEEEEEe
Confidence            667789999999999999654 5789999999764321  1245679999999999999999999999999999999999


Q ss_pred             ccCCCCHHhHh
Q 041300          705 FLERGSLAAIL  715 (716)
Q Consensus       705 y~~~GsL~~~l  715 (716)
                      |+++++|.+++
T Consensus        80 ~~~~~~L~~~~   90 (254)
T cd06627          80 YAENGSLRQII   90 (254)
T ss_pred             cCCCCcHHHHH
Confidence            99999999875

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=98.71  E-value=3.5e-08  Score=100.68  Aligned_cols=89  Identities=24%  Similarity=0.458  Sum_probs=71.9

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCC----EEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCe
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGE----VVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQH  698 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~----~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~  698 (716)
                      .+|...++||+|+||.||+|.+ +++.    .||||++....   .....+++.+|+.++..++|||+++++++|.. ..
T Consensus         7 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~---~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-~~   82 (279)
T cd05109           7 TELKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENT---SPKANKEILDEAYVMAGVGSPYVCRLLGICLT-ST   82 (279)
T ss_pred             hheeeeeecCCCCCceEEEEEEecCCCccceEEEEEEecCCC---CHHHHHHHHHHHHHHHhcCCCCCceEEEEEcC-CC
Confidence            4677888999999999999974 3444    48999986532   11234678999999999999999999999965 45


Q ss_pred             eeEEEcccCCCCHHhHhC
Q 041300          699 SFLVYEFLERGSLAAILS  716 (716)
Q Consensus       699 ~~lv~Ey~~~GsL~~~l~  716 (716)
                      .++++||+++|+|.++++
T Consensus        83 ~~l~~~~~~~g~l~~~l~  100 (279)
T cd05109          83 VQLVTQLMPYGCLLDYVR  100 (279)
T ss_pred             cEEEEEcCCCCCHHHHHh
Confidence            789999999999998863

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=98.71  E-value=2.7e-08  Score=100.03  Aligned_cols=89  Identities=21%  Similarity=0.402  Sum_probs=74.9

Q ss_pred             CCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          625 DFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      +|...+.||+|+||.||++.. .++..+|+|.+.......  ....++.+|++++++++|+||+++++++......++||
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~   78 (256)
T cd08530           1 DFKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQ--KEREDAVNEIRILASVNHPNIISYKEAFLDGNKLCIVM   78 (256)
T ss_pred             CceEeeeecCCCceeEEEEEECCCCCEEEEEEEehhhccH--HHHHHHHHHHHHHHhCCCCCchhhhhhhccCCEEEEEe
Confidence            366778899999999999954 467899999987533221  23467889999999999999999999999999999999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      ||+++++|.+++
T Consensus        79 e~~~~~~L~~~~   90 (256)
T cd08530          79 EYAPFGDLSKAI   90 (256)
T ss_pred             hhcCCCCHHHHH
Confidence            999999998875

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=98.70  E-value=3.5e-08  Score=100.36  Aligned_cols=89  Identities=30%  Similarity=0.480  Sum_probs=74.7

Q ss_pred             hhcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeCC--
Q 041300          622 ETNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQ--  697 (716)
Q Consensus       622 ~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~~--  697 (716)
                      +++.|...+.||+|+||.||+|... +++.+|+|++.....     ...+|.+|+++++++ +|+|++++++++....  
T Consensus         4 ~~~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~-----~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~   78 (275)
T cd06608           4 PTGIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIED-----EEEEIKEEYNILRKYSNHPNIATFYGAFIKKNPP   78 (275)
T ss_pred             chhheeheeeecCCCCeEEEEEEECCCCcEEEEEEEecCch-----hHHHHHHHHHHHHHhcCCCChheEEEEEEecCCC
Confidence            4577889999999999999999764 578899999875321     335789999999999 7999999999997644  


Q ss_pred             ----eeeEEEcccCCCCHHhHh
Q 041300          698 ----HSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       698 ----~~~lv~Ey~~~GsL~~~l  715 (716)
                          ..++||||+++|+|.+++
T Consensus        79 ~~~~~~~lv~e~~~~~~L~~~~  100 (275)
T cd06608          79 GNDDQLWLVMELCGGGSVTDLV  100 (275)
T ss_pred             CcceEEEEEEEcCCCCcHHHHH
Confidence                479999999999998875

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=98.70  E-value=3.2e-09  Score=118.37  Aligned_cols=98  Identities=21%  Similarity=0.267  Sum_probs=81.4

Q ss_pred             HHHHHhhcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEe
Q 041300          617 DEIVRETNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSH  695 (716)
Q Consensus       617 ~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~  695 (716)
                      .++....++|...++||+|+||.|..++.+ .+..+|.|++.+..+... .....|..|-.+|...+.+.||.++.++.+
T Consensus        68 ~~lrl~~~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK~eMlKr-~~tA~F~EERDimv~~ns~Wiv~LhyAFQD  146 (1317)
T KOG0612|consen   68 KELRLKAEDFEILKVIGRGAFGEVALVRHKSTEKVYAMKILNKWEMLKR-AETACFREERDIMVFGNSEWIVQLHYAFQD  146 (1317)
T ss_pred             HHHhCCHHhhHHHHHhcccccceeEEEEeeccccchhHHHhhHHHHhhc-hhHHHHHHHhHHHHcCCcHHHHHHHHHhcC
Confidence            344445678999999999999999999765 577889999987433222 245678899999999999999999999999


Q ss_pred             CCeeeEEEcccCCCCHHhHh
Q 041300          696 AQHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       696 ~~~~~lv~Ey~~~GsL~~~l  715 (716)
                      +.+.|+|||||+||+|-..+
T Consensus       147 ~~~LYlVMdY~pGGDlltLl  166 (1317)
T KOG0612|consen  147 ERYLYLVMDYMPGGDLLTLL  166 (1317)
T ss_pred             ccceEEEEecccCchHHHHH
Confidence            99999999999999997654

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=98.70  E-value=4.8e-08  Score=100.40  Aligned_cols=83  Identities=34%  Similarity=0.509  Sum_probs=71.0

Q ss_pred             cccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEcccC
Q 041300          629 EYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLE  707 (716)
Q Consensus       629 ~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~  707 (716)
                      ..+||+|+||.||++.. .++..||||++....   . .....+.+|+.++++++|+|++++++++..++..++||||++
T Consensus        25 ~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~---~-~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~  100 (292)
T cd06657          25 FIKIGEGSTGIVCIATVKSSGKLVAVKKMDLRK---Q-QRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLE  100 (292)
T ss_pred             HHHcCCCCCeEEEEEEEcCCCeEEEEEEecccc---h-hHHHHHHHHHHHHHhcCCcchhheeeEEEeCCEEEEEEecCC
Confidence            35799999999999965 468899999875421   1 134569999999999999999999999999999999999999


Q ss_pred             CCCHHhHh
Q 041300          708 RGSLAAIL  715 (716)
Q Consensus       708 ~GsL~~~l  715 (716)
                      +|+|.+++
T Consensus       101 ~~~L~~~~  108 (292)
T cd06657         101 GGALTDIV  108 (292)
T ss_pred             CCcHHHHH
Confidence            99998875

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>PTZ00036 glycogen synthase kinase; Provisional

Probab=98.70  E-value=3.3e-08  Score=107.47  Aligned_cols=84  Identities=24%  Similarity=0.354  Sum_probs=66.1

Q ss_pred             hcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC-----
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA-----  696 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~-----  696 (716)
                      ...|...++||+|+||.||+|.. ..++.||||++...        .....+|+.++++++|||||++++++...     
T Consensus        65 ~~~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~--------~~~~~~Ei~il~~l~h~niv~l~~~~~~~~~~~~  136 (440)
T PTZ00036         65 NKSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQD--------PQYKNRELLIMKNLNHINIIFLKDYYYTECFKKN  136 (440)
T ss_pred             CCeEEEeEEEEeCCCEEEEEEEECCCCCEEEEEEEecC--------cchHHHHHHHHHhcCCCCCcceeeeEeecccccC
Confidence            45789999999999999999965 46889999988542        12345799999999999999999987442     


Q ss_pred             ---CeeeEEEcccCCCCHHhHh
Q 041300          697 ---QHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       697 ---~~~~lv~Ey~~~GsL~~~l  715 (716)
                         ...++||||+++ +|.+++
T Consensus       137 ~~~~~l~lvmE~~~~-~l~~~~  157 (440)
T PTZ00036        137 EKNIFLNVVMEFIPQ-TVHKYM  157 (440)
T ss_pred             CCceEEEEEEecCCc-cHHHHH
Confidence               135799999985 665543

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=98.70  E-value=3.6e-08  Score=103.13  Aligned_cols=93  Identities=26%  Similarity=0.351  Sum_probs=74.3

Q ss_pred             HHhhcCCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEe-CC
Q 041300          620 VRETNDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSH-AQ  697 (716)
Q Consensus       620 ~~~~~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~-~~  697 (716)
                      ...+++|...++||+|+||.||++. ..++..||||++.+.....  ...+.+.+|++++.+++|||+|++++++.. .+
T Consensus         6 ~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~--~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~   83 (328)
T cd07856           6 FEITNRYVDLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTP--VLAKRTYRELKLLKHLRHENIISLSDIFISPLE   83 (328)
T ss_pred             eccccceEEEEeecccCCeEEEEEEECCCCCEEEEEEeccccccc--chhHHHHHHHHHHHhcCCCCeeeEeeeEecCCC
Confidence            3456789999999999999999996 4478899999886532111  134568899999999999999999999865 45


Q ss_pred             eeeEEEcccCCCCHHhHh
Q 041300          698 HSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       698 ~~~lv~Ey~~~GsL~~~l  715 (716)
                      ..++|+||+ +++|.+++
T Consensus        84 ~~~lv~e~~-~~~L~~~~  100 (328)
T cd07856          84 DIYFVTELL-GTDLHRLL  100 (328)
T ss_pred             cEEEEeehh-ccCHHHHH
Confidence            789999998 56887765

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=98.70  E-value=4.5e-08  Score=99.52  Aligned_cols=88  Identities=32%  Similarity=0.529  Sum_probs=69.3

Q ss_pred             CcccccccCCCceEEEEEEcC----CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC----
Q 041300          626 FDAEYCIGNGGHGSVYRAELP----SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ----  697 (716)
Q Consensus       626 ~~~~~~ig~g~~g~v~~~~~~----~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~----  697 (716)
                      |...++||+|+||.||+|.+.    .+..||||++..... .. ...+++.+|++++++++|||++++++++...+    
T Consensus         1 ~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~-~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   78 (273)
T cd05074           1 FTLGRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIF-SS-SDIEEFLREAACMKEFDHPNVIKLIGVSLRSRAKGR   78 (273)
T ss_pred             CcchhcccCCCCCCEEeeEeeccCCCceEEEEEEeccccC-Ch-HHHHHHHHHHHHHhcCCCCCcceEEEEEccCCCCCc
Confidence            455678999999999999643    367899999875322 11 13467899999999999999999999986542    


Q ss_pred             --eeeEEEcccCCCCHHhHh
Q 041300          698 --HSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       698 --~~~lv~Ey~~~GsL~~~l  715 (716)
                        ..++++||+++|+|.+++
T Consensus        79 ~~~~~~~~~~~~~~~l~~~~   98 (273)
T cd05074          79 LPIPMVILPFMKHGDLHTFL   98 (273)
T ss_pred             ccceEEEEecCCCCcHHHHH
Confidence              247899999999998765

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=98.69  E-value=3.4e-08  Score=100.97  Aligned_cols=95  Identities=26%  Similarity=0.499  Sum_probs=76.2

Q ss_pred             HHHHHHhhcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEE
Q 041300          616 YDEIVRETNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFC  693 (716)
Q Consensus       616 ~~~~~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~  693 (716)
                      ..++..+...|...+.+|+|+||.||+|.. .+++.||+|.+....     ....++..|+.++.++ +|+|++++++++
T Consensus         8 ~~~~~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~~-----~~~~~~~~e~~~l~~~~~h~~i~~~~~~~   82 (282)
T cd06636           8 LSALRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTE-----DEEEEIKLEINMLKKYSHHRNIATYYGAF   82 (282)
T ss_pred             hhhhcChhhhhhhheeeccCCCeEEEEEEEcCCCcEEEEEEEecCh-----HHHHHHHHHHHHHHHhcCCCcEEEEeeeh
Confidence            344445567788889999999999999975 457899999886421     1335688999999998 799999999998


Q ss_pred             Ee------CCeeeEEEcccCCCCHHhHh
Q 041300          694 SH------AQHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       694 ~~------~~~~~lv~Ey~~~GsL~~~l  715 (716)
                      ..      .+..++||||+++|+|.+++
T Consensus        83 ~~~~~~~~~~~~~iv~e~~~~~~L~~~~  110 (282)
T cd06636          83 IKKSPPGHDDQLWLVMEFCGAGSVTDLV  110 (282)
T ss_pred             hcccccCCCCEEEEEEEeCCCCcHHHHH
Confidence            53      35679999999999999876

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=98.68  E-value=6.2e-08  Score=99.45  Aligned_cols=88  Identities=25%  Similarity=0.466  Sum_probs=66.3

Q ss_pred             CCcccccccCCCceEEEEEEc-C-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC---CCCCccccceEEEe----
Q 041300          625 DFDAEYCIGNGGHGSVYRAEL-P-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI---RHRNIVKFYGFCSH----  695 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~-~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l---~H~niv~l~g~~~~----  695 (716)
                      +|...+.||+|+||.||+|+. . +++.||||++........  ....+.+|+++++.+   +||||++++++|..    
T Consensus         2 ~Y~~~~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~~--~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~~   79 (290)
T cd07862           2 QYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEG--MPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTD   79 (290)
T ss_pred             CcceeeEeccCCCeEEEEEEEcCCCCeEEEEEEEecccCCCC--chHHHHHHHHHHHhhcccCCCCcceEEEEEecccCC
Confidence            577788999999999999964 2 467899999875332211  234566777776655   69999999999853    


Q ss_pred             -CCeeeEEEcccCCCCHHhHh
Q 041300          696 -AQHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       696 -~~~~~lv~Ey~~~GsL~~~l  715 (716)
                       ....++||||++ |+|.+++
T Consensus        80 ~~~~~~lv~e~~~-~~l~~~~   99 (290)
T cd07862          80 RETKLTLVFEHVD-QDLTTYL   99 (290)
T ss_pred             CCCcEEEEEccCC-CCHHHHH
Confidence             345799999997 5888765

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.68  E-value=1.4e-08  Score=107.35  Aligned_cols=83  Identities=25%  Similarity=0.437  Sum_probs=70.1

Q ss_pred             ccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEcccCC
Q 041300          630 YCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLER  708 (716)
Q Consensus       630 ~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~  708 (716)
                      -++|+|.||+||.|+ .++...+|||-+.....    ...+....||.+.++++|.|||+++|.|.+++..-|.||-++|
T Consensus       581 vVLGKGTYG~VYA~RD~~tqvrIaIKEIpekds----r~~QPLhEEIaLH~~LrHkNIVrYLGs~senGf~kIFMEqVPG  656 (1226)
T KOG4279|consen  581 VVLGKGTYGTVYAARDMDTQVRIAIKEIPEKDS----REVQPLHEEIALHSTLRHKNIVRYLGSVSENGFFKIFMEQVPG  656 (1226)
T ss_pred             EEeecCceeEEEeeccccceeEEEeeecccccc----hhhccHHHHHHHHHHHhhHhHHHHhhccCCCCeEEEEeecCCC
Confidence            379999999999996 34456789999875321    1345678899999999999999999999999999999999999


Q ss_pred             CCHHhHhC
Q 041300          709 GSLAAILS  716 (716)
Q Consensus       709 GsL~~~l~  716 (716)
                      |+|.+.|+
T Consensus       657 GSLSsLLr  664 (1226)
T KOG4279|consen  657 GSLSSLLR  664 (1226)
T ss_pred             CcHHHHHH
Confidence            99998874

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=98.68  E-value=9.5e-10  Score=101.96  Aligned_cols=88  Identities=20%  Similarity=0.361  Sum_probs=74.5

Q ss_pred             cCCcccccccCCCceEEEEE-EcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~-~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      +.|+..++||+|.|..||++ ..++|+.+|+|.+...+. ... +.++..+|+.+-+.++|||||++...+......|||
T Consensus        11 d~y~l~e~igkG~FSvVrRc~~~~tg~~fa~kiin~~k~-~~~-~~e~l~rEarIC~~LqHP~IvrL~~ti~~~~~~ylv   88 (355)
T KOG0033|consen   11 DNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKL-SAR-DFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLV   88 (355)
T ss_pred             hhhhHHHHHccCchHHHHHHHhccchHHHHHHHhhhhhh-ccc-cHHHHHHHHHHHHhcCCCcEeehhhhhcccceeEEE
Confidence            45777789999999999998 556788899998864322 222 557889999999999999999999999999999999


Q ss_pred             EcccCCCCHHh
Q 041300          703 YEFLERGSLAA  713 (716)
Q Consensus       703 ~Ey~~~GsL~~  713 (716)
                      +|+|+||+|..
T Consensus        89 Fe~m~G~dl~~   99 (355)
T KOG0033|consen   89 FDLVTGGELFE   99 (355)
T ss_pred             EecccchHHHH
Confidence            99999999974

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=98.68  E-value=6.9e-08  Score=97.00  Aligned_cols=89  Identities=25%  Similarity=0.449  Sum_probs=75.4

Q ss_pred             CCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          625 DFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      +|...+.||+|+||.||++... ++..||+|++......  ....+++.+|++++++++|+|++++++.+..++..++|+
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~--~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~~~~~lv~   78 (258)
T cd08215           1 KYEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMS--EKEREDALNEVKILKKLNHPNIIKYYESFEEKGKLCIVM   78 (258)
T ss_pred             CceEEeeeccCCCeEEEEEEEcCCCcEEEEEEeecccCC--hHHHHHHHHHHHHHHhcCCCChhheEEEEecCCEEEEEE
Confidence            3667788999999999999754 5889999998753321  124567899999999999999999999999999999999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      ||+++++|.+++
T Consensus        79 e~~~~~~L~~~l   90 (258)
T cd08215          79 EYADGGDLSQKI   90 (258)
T ss_pred             EecCCCcHHHHH
Confidence            999999998876

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=98.67  E-value=6.1e-08  Score=99.14  Aligned_cols=87  Identities=30%  Similarity=0.466  Sum_probs=71.5

Q ss_pred             CcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEc
Q 041300          626 FDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYE  704 (716)
Q Consensus       626 ~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~E  704 (716)
                      |...+.||+|++|.||+|.. .+|..||||++....... . ....+.+|++++++++|||++++++++.+++..++|||
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~-~-~~~~~~~E~~~l~~l~~~~iv~~~~~~~~~~~~~iv~e   78 (283)
T cd07835           1 YQKVEKIGEGTYGVVYKARDKLTGEIVALKKIRLETEDE-G-VPSTAIREISLLKELNHPNIVRLLDVVHSENKLYLVFE   78 (283)
T ss_pred             CchheEecCCCCeEEEEEEEcCCCCEEEEEEeecccccc-c-chhHHHHHHHHHHhcCCCCccCHhheeccCCeEEEEEe
Confidence            45567899999999999965 468999999987532111 1 23568899999999999999999999999999999999


Q ss_pred             ccCCCCHHhHh
Q 041300          705 FLERGSLAAIL  715 (716)
Q Consensus       705 y~~~GsL~~~l  715 (716)
                      |++ ++|.+++
T Consensus        79 ~~~-~~l~~~~   88 (283)
T cd07835          79 FLD-LDLKKYM   88 (283)
T ss_pred             ccC-cCHHHHH
Confidence            995 6888875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=98.67  E-value=2.2e-08  Score=98.74  Aligned_cols=90  Identities=30%  Similarity=0.454  Sum_probs=71.7

Q ss_pred             hcCCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEe-----C
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSH-----A  696 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~-----~  696 (716)
                      ...|...+.||+|+||.|+.+. -.+|+.||||++...  .+.....+.-.||+.++++++|+|||.+.+.+..     .
T Consensus        21 ~~~y~~~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~~--F~~~~~akRtlRElklLr~~~HeNIi~l~di~~p~~~~~f   98 (359)
T KOG0660|consen   21 PRYYVLIEPIGRGAYGVVCSAKDKRTGEKVAIKKILNP--FENQIDAKRTLRELKLLRHLRHENIIGLLDIFRPPSRDKF   98 (359)
T ss_pred             cceecccccccCcceeeEEEEEEcCCCCEeehhhhhhh--hhchHHHHHHHHHHHHHHHhcCCCcceEEeeccccccccc
Confidence            3456556789999999999995 457899999999742  2333356778899999999999999999999866     3


Q ss_pred             CeeeEEEcccCCCCHHhHh
Q 041300          697 QHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       697 ~~~~lv~Ey~~~GsL~~~l  715 (716)
                      +..|+|+|+|+- +|.+.+
T Consensus        99 ~DvYiV~elMet-DL~~ii  116 (359)
T KOG0660|consen   99 NDVYLVFELMET-DLHQII  116 (359)
T ss_pred             ceeEEehhHHhh-HHHHHH
Confidence            578999999965 777655

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=98.67  E-value=4.9e-08  Score=100.97  Aligned_cols=88  Identities=24%  Similarity=0.472  Sum_probs=70.1

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCC----EEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCe
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGE----VVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQH  698 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~----~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~  698 (716)
                      .+|...+.||+|+||.||+|... ++.    .||+|.+.....   .....+|.+|+.++++++||||++++|+|..+ .
T Consensus         7 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~-~   82 (303)
T cd05110           7 TELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTG---PKANVEFMDEALIMASMDHPHLVRLLGVCLSP-T   82 (303)
T ss_pred             hhceeccccccCCCccEEEEEEecCCCcceeeEEEEeccccCC---HHHHHHHHHHHHHHHhCCCCCcccEEEEEcCC-C
Confidence            35777789999999999999653 343    578998865321   11345789999999999999999999999654 4


Q ss_pred             eeEEEcccCCCCHHhHh
Q 041300          699 SFLVYEFLERGSLAAIL  715 (716)
Q Consensus       699 ~~lv~Ey~~~GsL~~~l  715 (716)
                      .++|+||+++|+|.+++
T Consensus        83 ~~~v~e~~~~g~l~~~~   99 (303)
T cd05110          83 IQLVTQLMPHGCLLDYV   99 (303)
T ss_pred             ceeeehhcCCCCHHHHH
Confidence            67999999999999876

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=98.66  E-value=8.5e-08  Score=98.18  Aligned_cols=86  Identities=33%  Similarity=0.454  Sum_probs=72.6

Q ss_pred             CcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEc
Q 041300          626 FDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYE  704 (716)
Q Consensus       626 ~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~E  704 (716)
                      |...+.||+|++|.||++.. .++..||+|++....    ....+.+.+|+.+++.++|||++++++++..++..++|+|
T Consensus        21 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~----~~~~~~~~~e~~~l~~~~h~~vv~~~~~~~~~~~~~~v~e   96 (285)
T cd06648          21 LDNFVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRK----QQRRELLFNEVVIMRDYQHPNIVEMYSSYLVGDELWVVME   96 (285)
T ss_pred             hhcceEeccCCCeEEEEEEECCCCCEEEEEEEeccc----hhHHHHHHHHHHHHHHcCCCChheEEEEEEcCCeEEEEEe
Confidence            44556899999999999964 468899999886421    1134568899999999999999999999999999999999


Q ss_pred             ccCCCCHHhHh
Q 041300          705 FLERGSLAAIL  715 (716)
Q Consensus       705 y~~~GsL~~~l  715 (716)
                      |+++++|.+++
T Consensus        97 ~~~~~~L~~~~  107 (285)
T cd06648          97 FLEGGALTDIV  107 (285)
T ss_pred             ccCCCCHHHHH
Confidence            99999999875

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=98.66  E-value=6.7e-08  Score=102.57  Aligned_cols=89  Identities=25%  Similarity=0.352  Sum_probs=70.5

Q ss_pred             hcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC----
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ----  697 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~----  697 (716)
                      ..+|...+.||+|+||.||++.. .++..||||++......  ......+.+|+.+++.++||||+++++++...+    
T Consensus        20 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~   97 (359)
T cd07876          20 LKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQN--QTHAKRAYRELVLLKCVNHKNIISLLNVFTPQKSLEE   97 (359)
T ss_pred             hhceEEEEEeecCCCEEEEEEEEcCCCceeEEEEecccccc--hhHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCCccc
Confidence            36788899999999999999964 46889999998653211  123467889999999999999999999986543    


Q ss_pred             --eeeEEEcccCCCCHHhH
Q 041300          698 --HSFLVYEFLERGSLAAI  714 (716)
Q Consensus       698 --~~~lv~Ey~~~GsL~~~  714 (716)
                        ..|+||||+++ +|.+.
T Consensus        98 ~~~~~lv~e~~~~-~l~~~  115 (359)
T cd07876          98 FQDVYLVMELMDA-NLCQV  115 (359)
T ss_pred             cceeEEEEeCCCc-CHHHH
Confidence              46999999986 45544

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=98.66  E-value=7.3e-08  Score=97.16  Aligned_cols=85  Identities=24%  Similarity=0.313  Sum_probs=65.4

Q ss_pred             ccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHH-hcCCCCCccccceEEEeCCeeeEEEcccC
Q 041300          630 YCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQAL-TEIRHRNIVKFYGFCSHAQHSFLVYEFLE  707 (716)
Q Consensus       630 ~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l-~~l~H~niv~l~g~~~~~~~~~lv~Ey~~  707 (716)
                      +.||+|+||.||+|... +++.||||.+......... ....+..|..++ ...+|+|++++++++...+..|+|+||++
T Consensus         2 ~~l~~g~~~~v~~a~~~~~~~~vavK~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~   80 (260)
T cd05611           2 KPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKN-QVTNVKAERAIMMIQGESPYVAKLYYSFQSKDYLYLVMEYLN   80 (260)
T ss_pred             ccCCcCCCeeEEEEEecCCCCeEEEEEecchhhhHHH-HHHHHHHHHHHHhhcCCCCCeeeeeeeEEcCCeEEEEEeccC
Confidence            45899999999999653 5889999998653211111 223455565544 45589999999999999999999999999


Q ss_pred             CCCHHhHh
Q 041300          708 RGSLAAIL  715 (716)
Q Consensus       708 ~GsL~~~l  715 (716)
                      +|+|.+++
T Consensus        81 ~~~L~~~l   88 (260)
T cd05611          81 GGDCASLI   88 (260)
T ss_pred             CCCHHHHH
Confidence            99999876

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=98.65  E-value=8.4e-08  Score=97.88  Aligned_cols=84  Identities=20%  Similarity=0.220  Sum_probs=63.8

Q ss_pred             cccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHH---HhcCCCCCccccceEEEeCCeeeEEEccc
Q 041300          631 CIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQA---LTEIRHRNIVKFYGFCSHAQHSFLVYEFL  706 (716)
Q Consensus       631 ~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~---l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  706 (716)
                      +||+|+||.||++.. .+++.||||.+.+....... ....+.+|..+   +...+||+++.+++++..++..++||||+
T Consensus         1 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~   79 (279)
T cd05633           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQ-GETLALNERIMLSLVSTGDCPFIVCMTYAFHTPDKLCFILDLM   79 (279)
T ss_pred             CcccCCCeEEEEEEECCCCcEEEEEEEEccccccch-HHHHHHHHHHHHHHHhhCCCCcEeEEEEEEecCCeEEEEEecC
Confidence            489999999999965 45889999998754322221 22334445433   44458999999999999889999999999


Q ss_pred             CCCCHHhHh
Q 041300          707 ERGSLAAIL  715 (716)
Q Consensus       707 ~~GsL~~~l  715 (716)
                      ++|+|.+++
T Consensus        80 ~~~~L~~~i   88 (279)
T cd05633          80 NGGDLHYHL   88 (279)
T ss_pred             CCCCHHHHH
Confidence            999998876

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=98.65  E-value=1.1e-07  Score=95.27  Aligned_cols=87  Identities=34%  Similarity=0.580  Sum_probs=75.4

Q ss_pred             CCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          625 DFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      +|...+.||+|++|.||++... ++..||+|++.....    ...+.+.+|++.+++++|++++++++++...+..++|+
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~----~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~l~~   76 (253)
T cd05122           1 LFEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESK----EKKEKIINEIQILKKCKHPNIVKYYGSYLKKDELWIVM   76 (253)
T ss_pred             CceeeeeeccCCceEEEEEEECCCCcEEEEEEecccch----hHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEE
Confidence            3667788999999999999765 688999999976322    14467999999999999999999999999999999999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      ||+++++|.+++
T Consensus        77 e~~~~~~L~~~~   88 (253)
T cd05122          77 EFCSGGSLKDLL   88 (253)
T ss_pred             ecCCCCcHHHHH
Confidence            999999999875

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=98.65  E-value=8.1e-08  Score=99.97  Aligned_cols=88  Identities=27%  Similarity=0.483  Sum_probs=70.1

Q ss_pred             CcccccccCCCceEEEEEEcC---CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC--Ceee
Q 041300          626 FDAEYCIGNGGHGSVYRAELP---SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA--QHSF  700 (716)
Q Consensus       626 ~~~~~~ig~g~~g~v~~~~~~---~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~--~~~~  700 (716)
                      |.....||+|+||.||+|...   ++..||+|.+......... ....+.+|++++.+++|||++++++++.+.  +..+
T Consensus         2 y~~~~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   80 (316)
T cd07842           2 YEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTG-ISQSACREIALLRELKHENVVSLVEVFLEHADKSVY   80 (316)
T ss_pred             ceEEEEeccCCcEEEEEEEecCCCCCCeEEEEEeccccccccC-ccHHHHHHHHHHHhcCCCCccceEEEEeCCCCceEE
Confidence            667788999999999999754   4789999999763211111 235678899999999999999999999888  7899


Q ss_pred             EEEcccCCCCHHhHh
Q 041300          701 LVYEFLERGSLAAIL  715 (716)
Q Consensus       701 lv~Ey~~~GsL~~~l  715 (716)
                      +||||+++ ++.+++
T Consensus        81 lv~e~~~~-~l~~~~   94 (316)
T cd07842          81 LLFDYAEH-DLWQII   94 (316)
T ss_pred             EEEeCCCc-CHHHHH
Confidence            99999986 565543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=98.65  E-value=5.9e-08  Score=99.81  Aligned_cols=89  Identities=27%  Similarity=0.440  Sum_probs=72.4

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC--Ceee
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA--QHSF  700 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~--~~~~  700 (716)
                      ++|...+.||+|+||.||+|... +++.||+|.++.....+.  ....+.+|++++.+++|||++++++++...  +..|
T Consensus         5 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~--~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~   82 (293)
T cd07843           5 DEYEKLNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKEG--FPITSLREINILLKLQHPNIVTVKEVVVGSNLDKIY   82 (293)
T ss_pred             hhhhhhhhhcCCCCeEEEEEEECCCCcEEEEEEEeecccccc--chhhHHHHHHHHHhcCCCCEEEEEEEEEecCCCcEE
Confidence            46788889999999999999765 588999999975322111  234577899999999999999999999877  7899


Q ss_pred             EEEcccCCCCHHhHh
Q 041300          701 LVYEFLERGSLAAIL  715 (716)
Q Consensus       701 lv~Ey~~~GsL~~~l  715 (716)
                      +||||+++ +|.+++
T Consensus        83 lv~e~~~~-~L~~~~   96 (293)
T cd07843          83 MVMEYVEH-DLKSLM   96 (293)
T ss_pred             EEehhcCc-CHHHHH
Confidence            99999984 887765

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=98.65  E-value=5.7e-08  Score=97.25  Aligned_cols=83  Identities=27%  Similarity=0.367  Sum_probs=70.6

Q ss_pred             ccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEcccCCCC
Q 041300          632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGS  710 (716)
Q Consensus       632 ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~Gs  710 (716)
                      ||+|+||.||++... +++.+|+|++........ .....+..|++++++++|||++++++.+..++..++||||+++|+
T Consensus         1 lg~G~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~   79 (250)
T cd05123           1 LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKR-KEVEHTLTERNILSRINHPFIVKLHYAFQTEEKLYLVLEYAPGGE   79 (250)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEeehhhhcch-HHHHHHHHHHHHHHHcCCCcHHHHHHHeecCCeeEEEEecCCCCc
Confidence            699999999999764 588999999876432221 134578999999999999999999999999999999999999999


Q ss_pred             HHhHh
Q 041300          711 LAAIL  715 (716)
Q Consensus       711 L~~~l  715 (716)
                      |.+++
T Consensus        80 L~~~l   84 (250)
T cd05123          80 LFSHL   84 (250)
T ss_pred             HHHHH
Confidence            99876

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=98.65  E-value=6.7e-08  Score=99.84  Aligned_cols=91  Identities=31%  Similarity=0.491  Sum_probs=72.0

Q ss_pred             hhcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC---
Q 041300          622 ETNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ---  697 (716)
Q Consensus       622 ~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~---  697 (716)
                      ...+|...+.||+|+||.||+|... +++.||||+++.......  ....+.+|++++++++|||++++++++.+..   
T Consensus         5 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~--~~~~~~~e~~~~~~l~h~~i~~~~~~~~~~~~~~   82 (302)
T cd07864           5 CVDKFDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEG--FPITAIREIKILRQLNHRNIVNLKEIVTDKQDAL   82 (302)
T ss_pred             hhhhhheeeeecccCCEEEEEEEECCCCcEEEEEEEeecccccC--chHHHHHHHHHHHhCCCCCeeeeeheecCcchhh
Confidence            4467888999999999999999764 588999999875321111  2356788999999999999999999997654   


Q ss_pred             -------eeeEEEcccCCCCHHhHh
Q 041300          698 -------HSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       698 -------~~~lv~Ey~~~GsL~~~l  715 (716)
                             ..++|+||+++ ++.+++
T Consensus        83 ~~~~~~~~~~lv~e~~~~-~l~~~l  106 (302)
T cd07864          83 DFKKDKGAFYLVFEYMDH-DLMGLL  106 (302)
T ss_pred             hccccCCcEEEEEcccCc-cHHHHH
Confidence                   68999999986 555543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=98.65  E-value=1.1e-07  Score=98.76  Aligned_cols=88  Identities=32%  Similarity=0.469  Sum_probs=70.8

Q ss_pred             CcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEc
Q 041300          626 FDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYE  704 (716)
Q Consensus       626 ~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~E  704 (716)
                      |...+.||+|+||+||+|.. .++..||+|++........ ...+.+.+|++++++++|||++++++++.+.+..|+|||
T Consensus        23 ~~~~~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e  101 (313)
T cd06633          23 FVGLHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTN-EKWQDIIKEVKFLQQLKHPNTIEYKGCYLKEHTAWLVME  101 (313)
T ss_pred             hhcceeeccCCCeEEEEEEECCCCcEEEEEEEeccccCch-HHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEEe
Confidence            45566799999999999975 3588999999865322222 134568899999999999999999999999999999999


Q ss_pred             ccCCCCHHhHh
Q 041300          705 FLERGSLAAIL  715 (716)
Q Consensus       705 y~~~GsL~~~l  715 (716)
                      |+. |++.+++
T Consensus       102 ~~~-~~l~~~l  111 (313)
T cd06633         102 YCL-GSASDLL  111 (313)
T ss_pred             cCC-CCHHHHH
Confidence            996 5676654

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=98.65  E-value=4e-08  Score=100.53  Aligned_cols=87  Identities=26%  Similarity=0.455  Sum_probs=71.0

Q ss_pred             CcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEc
Q 041300          626 FDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYE  704 (716)
Q Consensus       626 ~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~E  704 (716)
                      |...+.||+|+||.||+|... +|..||+|+++.......  ....+.+|++++++++|||++++++++.+.+..++|+|
T Consensus         2 y~~~~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~~~~--~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   79 (284)
T cd07839           2 YEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEG--VPSSALREICLLKELKHKNIVRLYDVLHSDKKLTLVFE   79 (284)
T ss_pred             ceeEEEecccCCeEEEEEEECCCCcEEEEEEeeccccccc--CccchhHHHHHHHhcCCCCeeeHHHHhccCCceEEEEe
Confidence            666788999999999999754 688999999865321111  23467889999999999999999999999999999999


Q ss_pred             ccCCCCHHhHh
Q 041300          705 FLERGSLAAIL  715 (716)
Q Consensus       705 y~~~GsL~~~l  715 (716)
                      |+++ +|.+++
T Consensus        80 ~~~~-~l~~~~   89 (284)
T cd07839          80 YCDQ-DLKKYF   89 (284)
T ss_pred             cCCC-CHHHHH
Confidence            9984 777654

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=98.64  E-value=3.5e-08  Score=110.95  Aligned_cols=93  Identities=27%  Similarity=0.509  Sum_probs=76.4

Q ss_pred             HhhcCCcccccccCCCceEEEEEEcC----C----CCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccce
Q 041300          621 RETNDFDAEYCIGNGGHGSVYRAELP----S----GEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYG  691 (716)
Q Consensus       621 ~~~~~~~~~~~ig~g~~g~v~~~~~~----~----~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g  691 (716)
                      ....++...+.+|+|.||+||+|...    .    ...||||.++.....   ...+.+..|+++|..+ +|+|+|.++|
T Consensus       293 ~~~~~l~~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~---~~~~~~~~El~~m~~~g~H~niv~llG  369 (609)
T KOG0200|consen  293 IPRENLKLGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASS---SEKKDLMSELNVLKELGKHPNIVNLLG  369 (609)
T ss_pred             echhhccccceeecccccceEeEEEeecccccccceEEEEEEecccccCc---HHHHHHHHHHHHHHHhcCCcchhhhee
Confidence            33444556668999999999999642    1    357999999864322   2567899999999999 6999999999


Q ss_pred             EEEeCCeeeEEEcccCCCCHHhHhC
Q 041300          692 FCSHAQHSFLVYEFLERGSLAAILS  716 (716)
Q Consensus       692 ~~~~~~~~~lv~Ey~~~GsL~~~l~  716 (716)
                      +|...+..++|+||++.|+|.++|+
T Consensus       370 ~~t~~~~~~~v~Ey~~~G~L~~~Lr  394 (609)
T KOG0200|consen  370 ACTQDGPLYVIVEYAEHGDLLEFLR  394 (609)
T ss_pred             eeccCCceEEEEEeccCCcHHHHHH
Confidence            9999899999999999999999985

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=98.62  E-value=1e-07  Score=98.12  Aligned_cols=88  Identities=25%  Similarity=0.405  Sum_probs=70.4

Q ss_pred             CCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCC-CCCccccceEEEeCCe----
Q 041300          625 DFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR-HRNIVKFYGFCSHAQH----  698 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~-H~niv~l~g~~~~~~~----  698 (716)
                      +|...+.||+|+||.||+|... +++.||||++.......  .....+.+|++++++++ |||++++++++...+.    
T Consensus         2 ~y~~~~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~~--~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~   79 (295)
T cd07837           2 AYEKLEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEE--GIPPTALREISLLQMLSESIYIVRLLDVEHVEEKNGKP   79 (295)
T ss_pred             CceEeeEecccCCeEEEEEEECCCCcEEEEEeehhhcccc--CCchHHHHHHHHHHHccCCCCccceeeeEeecCCCCCc
Confidence            5778889999999999999754 68899999886532111  12356889999999995 6999999999977665    


Q ss_pred             -eeEEEcccCCCCHHhHh
Q 041300          699 -SFLVYEFLERGSLAAIL  715 (716)
Q Consensus       699 -~~lv~Ey~~~GsL~~~l  715 (716)
                       .|+||||+++ +|.+++
T Consensus        80 ~~~lv~e~~~~-~l~~~~   96 (295)
T cd07837          80 SLYLVFEYLDS-DLKKFM   96 (295)
T ss_pred             eEEEEeeccCc-CHHHHH
Confidence             7999999995 787765

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>PRK10345 hypothetical protein; Provisional

Probab=98.62  E-value=1.2e-07  Score=90.95  Aligned_cols=84  Identities=15%  Similarity=0.276  Sum_probs=64.6

Q ss_pred             CcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-----CCCCccccceEEEeCC---
Q 041300          626 FDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-----RHRNIVKFYGFCSHAQ---  697 (716)
Q Consensus       626 ~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-----~H~niv~l~g~~~~~~---  697 (716)
                      +.....||+|+||.||. ...++.. +||++.....    ...+++.+|+.++.++     .||||++++|++.+..   
T Consensus         4 L~~~~~LG~G~~~~Vy~-hp~~~~k-~IKv~~~~~~----~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~~g~g   77 (210)
T PRK10345          4 LSEQSPLGTGRHRKCYA-HPEDAQR-CIKIVYHRGD----GGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETDCGTG   77 (210)
T ss_pred             cCCcceecCCCceEEEE-CCCCcCe-EEEEEecccc----chHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeCCCCe
Confidence            45567899999999996 3334444 7998865321    1346799999999999     6799999999998863   


Q ss_pred             eee-EEEcc--cCCCCHHhHh
Q 041300          698 HSF-LVYEF--LERGSLAAIL  715 (716)
Q Consensus       698 ~~~-lv~Ey--~~~GsL~~~l  715 (716)
                      ..+ +|+||  +++|+|.+++
T Consensus        78 ~v~~~I~e~~G~~~~tL~~~l   98 (210)
T PRK10345         78 YVYDVIADFDGKPSITLTEFA   98 (210)
T ss_pred             EEEEEEecCCCCcchhHHHHH
Confidence            434 78999  6789999886

>PHA03211 serine/threonine kinase US3; Provisional

Probab=98.61  E-value=1e-07  Score=103.49  Aligned_cols=81  Identities=19%  Similarity=0.230  Sum_probs=69.2

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      .+|.....||+|+||.||++... .++.||||....          ..+.+|++++++++|+|||++++++..++..++|
T Consensus       169 ~gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~~----------~~~~~E~~iL~~L~HpnIv~l~~~~~~~~~~~lv  238 (461)
T PHA03211        169 LGFAIHRALTPGSEGCVFESSHPDYPQRVVVKAGWY----------ASSVHEARLLRRLSHPAVLALLDVRVVGGLTCLV  238 (461)
T ss_pred             CCeEEEEEEccCCCeEEEEEEECCCCCEEEEecccc----------cCHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEE
Confidence            36888899999999999999754 478899996321          3367899999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      |||+. |+|.+++
T Consensus       239 ~e~~~-~~L~~~l  250 (461)
T PHA03211        239 LPKYR-SDLYTYL  250 (461)
T ss_pred             EEccC-CCHHHHH
Confidence            99995 6888765

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=98.61  E-value=1.2e-07  Score=97.13  Aligned_cols=87  Identities=28%  Similarity=0.521  Sum_probs=71.2

Q ss_pred             CcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC--CeeeEE
Q 041300          626 FDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA--QHSFLV  702 (716)
Q Consensus       626 ~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~--~~~~lv  702 (716)
                      |...+.||+|+||.||+|... ++..||||++..... .. .....+.+|++++++++|+|++++++++...  +..++|
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~~-~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv   78 (287)
T cd07840           1 YEKIAQIGEGTYGQVYKARNKKTGELVALKKIRMENE-KE-GFPITAIREIKLLQKLRHPNIVRLKEIVTSKGKGSIYMV   78 (287)
T ss_pred             CeeeEEeccCCCeEEEEEEECCCCeEEEEEEEecccc-cc-cchHHHHHHHHHHHhccCCCeeeheeeEecCCCCcEEEE
Confidence            455678999999999999765 478999999986431 11 1345688999999999999999999999887  789999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      |||+++ +|.+++
T Consensus        79 ~e~~~~-~l~~~~   90 (287)
T cd07840          79 FEYMDH-DLTGLL   90 (287)
T ss_pred             eccccc-cHHHHH
Confidence            999985 787765

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=98.60  E-value=6.7e-08  Score=98.80  Aligned_cols=86  Identities=30%  Similarity=0.532  Sum_probs=70.2

Q ss_pred             CcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCC-CCCccccceEEEeCCeeeEEE
Q 041300          626 FDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR-HRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       626 ~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~-H~niv~l~g~~~~~~~~~lv~  703 (716)
                      |...+.||+|+||.||+|... +++.||||++......  . ......+|++.+.+++ |+|++++++++..++..++||
T Consensus         1 y~~~~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~--~-~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~   77 (283)
T cd07830           1 YKVIKQLGDGTFGSVYLARNKETGELVAIKKMKKKFYS--W-EECMNLREVKSLRKLNEHPNIVKLKEVFRENDELYFVF   77 (283)
T ss_pred             CeeheeeccCCceEEEEEEECCCCcEEEEEEehhhccc--h-hHHHHHHHHHHHHhccCCCCchhHHHHhhcCCcEEEEE
Confidence            456678999999999999865 4788999998653211  1 2234567999999999 999999999999999999999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      ||+ +|+|.+++
T Consensus        78 e~~-~~~l~~~~   88 (283)
T cd07830          78 EYM-EGNLYQLM   88 (283)
T ss_pred             ecC-CCCHHHHH
Confidence            999 88998765

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=98.60  E-value=1.1e-07  Score=99.85  Aligned_cols=87  Identities=23%  Similarity=0.338  Sum_probs=69.0

Q ss_pred             ccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccch----------hhHHHHHHHHHHHhcCCCCCccccceEEEeC
Q 041300          628 AEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQI----------ADQKEFLTEVQALTEIRHRNIVKFYGFCSHA  696 (716)
Q Consensus       628 ~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~----------~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~  696 (716)
                      ..+.||+|+||+||+|.. .+++.||||++.........          .....+.+|++++++++|+|++++++++..+
T Consensus        13 ~~~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~   92 (335)
T PTZ00024         13 KGAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENIMGLVDVYVEG   92 (335)
T ss_pred             hhhcccCCCceeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcceeeeeEEEecC
Confidence            456799999999999964 46889999998653221100          0012478999999999999999999999999


Q ss_pred             CeeeEEEcccCCCCHHhHh
Q 041300          697 QHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       697 ~~~~lv~Ey~~~GsL~~~l  715 (716)
                      +..++||||++ |+|.+++
T Consensus        93 ~~~~lv~e~~~-~~l~~~l  110 (335)
T PTZ00024         93 DFINLVMDIMA-SDLKKVV  110 (335)
T ss_pred             CcEEEEEeccc-cCHHHHH
Confidence            99999999997 6888765

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=98.60  E-value=5.7e-08  Score=97.97  Aligned_cols=90  Identities=20%  Similarity=0.232  Sum_probs=69.1

Q ss_pred             CcccccccCCCceEEEEEEcCC-CCEEEEEEccccCCcc-chhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          626 FDAEYCIGNGGHGSVYRAELPS-GEVVAVKKFHSSIPCD-QIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       626 ~~~~~~ig~g~~g~v~~~~~~~-~~~vavK~l~~~~~~~-~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      |...+.||+|+||.||++.... +..+++|.++...... ......++.+|+.++++++|||++++++++.+.+..++||
T Consensus         2 y~i~~~ig~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   81 (260)
T cd08222           2 YILQQRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVKFHASFLERDAFCIIT   81 (260)
T ss_pred             ceeeeeecCCCCceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCceEEEE
Confidence            6677889999999999996543 4445666654322111 1113345778999999999999999999999888999999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      ||+++++|.+++
T Consensus        82 e~~~~~~l~~~~   93 (260)
T cd08222          82 EYCEGRDLDCKL   93 (260)
T ss_pred             EeCCCCCHHHHH
Confidence            999999998765

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=98.59  E-value=1.4e-07  Score=99.43  Aligned_cols=91  Identities=21%  Similarity=0.347  Sum_probs=72.0

Q ss_pred             hhcCCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC---
Q 041300          622 ETNDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ---  697 (716)
Q Consensus       622 ~~~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~---  697 (716)
                      ..+.|...+.||+|+||.||++. ..++..||||++....  ........+.+|++++++++||||+++++++...+   
T Consensus        13 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   90 (343)
T cd07880          13 VPDRYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPF--QSELFAKRAYRELRLLKHMKHENVIGLLDVFTPDLSLD   90 (343)
T ss_pred             cccceEEEEEeeecCCeEEEEEEECCCCcEEEEEEecccc--cchHHHHHHHHHHHHHHhcCCCCccceeeeecCCcccc
Confidence            34678888999999999999996 4468999999986422  11113456889999999999999999999987643   


Q ss_pred             ---eeeEEEcccCCCCHHhHh
Q 041300          698 ---HSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       698 ---~~~lv~Ey~~~GsL~~~l  715 (716)
                         ..++||||+ +++|.+++
T Consensus        91 ~~~~~~lv~e~~-~~~l~~~~  110 (343)
T cd07880          91 RFHDFYLVMPFM-GTDLGKLM  110 (343)
T ss_pred             ccceEEEEEecC-CCCHHHHH
Confidence               358999999 67887764

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>PHA03209 serine/threonine kinase US3; Provisional

Probab=98.59  E-value=9.9e-08  Score=101.04  Aligned_cols=83  Identities=17%  Similarity=0.249  Sum_probs=69.6

Q ss_pred             hhcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeee
Q 041300          622 ETNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSF  700 (716)
Q Consensus       622 ~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~  700 (716)
                      ...+|...+.||+|+||.||+|... .+..||+|.....          ....|+.++++++|||||++++++..++..+
T Consensus        64 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~~----------~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~  133 (357)
T PHA03209         64 ASLGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQKG----------TTLIEAMLLQNVNHPSVIRMKDTLVSGAITC  133 (357)
T ss_pred             hhcCcEEEEEecCCCCeEEEEEEECCCCceEEEEeCCcc----------ccHHHHHHHHhCCCCCCcChhheEEeCCeeE
Confidence            3457999999999999999999764 4678999975431          2346899999999999999999999999999


Q ss_pred             EEEcccCCCCHHhHh
Q 041300          701 LVYEFLERGSLAAIL  715 (716)
Q Consensus       701 lv~Ey~~~GsL~~~l  715 (716)
                      +|+||+. |+|.+++
T Consensus       134 lv~e~~~-~~l~~~l  147 (357)
T PHA03209        134 MVLPHYS-SDLYTYL  147 (357)
T ss_pred             EEEEccC-CcHHHHH
Confidence            9999995 5888765

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=98.59  E-value=1.5e-07  Score=97.61  Aligned_cols=88  Identities=32%  Similarity=0.486  Sum_probs=71.0

Q ss_pred             CcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEc
Q 041300          626 FDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYE  704 (716)
Q Consensus       626 ~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~E  704 (716)
                      |...+.||+|+||.||+|.. .++..||+|.+........ ...+++.+|++++++++|+|++++++++..++..++|||
T Consensus        17 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   95 (308)
T cd06634          17 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSN-EKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVME   95 (308)
T ss_pred             HHHHHheeeCCCEEEEEEEEcCCCcEEEEEEEecccccCh-HHHHHHHHHHHHHHhCCCCCcccEEEEEEcCCeeEEEEE
Confidence            55667899999999999975 3578899999864322121 134568899999999999999999999999999999999


Q ss_pred             ccCCCCHHhHh
Q 041300          705 FLERGSLAAIL  715 (716)
Q Consensus       705 y~~~GsL~~~l  715 (716)
                      |+. |++.+++
T Consensus        96 ~~~-~~l~~~~  105 (308)
T cd06634          96 YCL-GSASDLL  105 (308)
T ss_pred             ccC-CCHHHHH
Confidence            997 6777654

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=98.59  E-value=1.3e-07  Score=98.03  Aligned_cols=90  Identities=37%  Similarity=0.496  Sum_probs=71.2

Q ss_pred             hcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC--Cee
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA--QHS  699 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~--~~~  699 (716)
                      ..+|...+.||+|+||.||+|.. .+|+.||+|++........  ....+.+|++++++++|+|++++++++...  +..
T Consensus         6 ~~~y~~~~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~--~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   83 (309)
T cd07845           6 VTEFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDG--IPISSLREITLLLNLRHPNIVELKEVVVGKHLDSI   83 (309)
T ss_pred             ccceeEeeeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCCC--CcchhhHHHHHHHhCCCCCCcceEEEEecCCCCeE
Confidence            45788899999999999999975 4588999999865322111  123567899999999999999999998764  468


Q ss_pred             eEEEcccCCCCHHhHh
Q 041300          700 FLVYEFLERGSLAAIL  715 (716)
Q Consensus       700 ~lv~Ey~~~GsL~~~l  715 (716)
                      ++||||+++ +|.+++
T Consensus        84 ~lv~e~~~~-~l~~~l   98 (309)
T cd07845          84 FLVMEYCEQ-DLASLL   98 (309)
T ss_pred             EEEEecCCC-CHHHHH
Confidence            999999975 777664

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=98.58  E-value=1.4e-07  Score=98.15  Aligned_cols=80  Identities=21%  Similarity=0.371  Sum_probs=63.6

Q ss_pred             cccccCCCceEEEEEEcC---CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEe--CCeeeEEE
Q 041300          629 EYCIGNGGHGSVYRAELP---SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSH--AQHSFLVY  703 (716)
Q Consensus       629 ~~~ig~g~~g~v~~~~~~---~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~--~~~~~lv~  703 (716)
                      .++||+|+||.||+|...   .++.||+|.+....      ....+.+|++++++++|||||++++++..  +...++||
T Consensus         6 ~~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~------~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~   79 (317)
T cd07868           6 GCKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTG------ISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLF   79 (317)
T ss_pred             ccccccCCCeEEEEEEEccCCCCceEEEEEECCCC------CcHHHHHHHHHHHhcCCCCCcceeeeEecCCCcEEEEEE
Confidence            457999999999999754   45789999986531      12457889999999999999999998854  34678999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      ||+.+ +|.+++
T Consensus        80 e~~~~-~l~~~~   90 (317)
T cd07868          80 DYAEH-DLWHII   90 (317)
T ss_pred             eccCC-CHHHHH
Confidence            99875 776654

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=98.57  E-value=7.1e-09  Score=109.36  Aligned_cols=87  Identities=31%  Similarity=0.491  Sum_probs=73.7

Q ss_pred             cCCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ++|....++|+|.||.|||++ ...+..+|||+++....    .+..-.++||-+++..+|||||.++|.+-..+..|+.
T Consensus        15 ddyellqrvgsgTygdvyKaRd~~s~elaavkvVkLep~----dd~~~iqqei~~~~dc~h~nivay~gsylr~dklwic   90 (829)
T KOG0576|consen   15 DDYELLQRVGSGTYGDVYKARDKRSGELAAVKVVKLEPG----DDFSGIQQEIGMLRDCRHPNIVAYFGSYLRRDKLWIC   90 (829)
T ss_pred             cchhheeeecCCcccchhhhcccccCchhhheeeeccCC----ccccccccceeeeecCCCcChHHHHhhhhhhcCcEEE
Confidence            467788899999999999996 44688999999875321    1334577899999999999999999999999999999


Q ss_pred             EcccCCCCHHhH
Q 041300          703 YEFLERGSLAAI  714 (716)
Q Consensus       703 ~Ey~~~GsL~~~  714 (716)
                      ||||.+|+|.|.
T Consensus        91 MEycgggslQdi  102 (829)
T KOG0576|consen   91 MEYCGGGSLQDI  102 (829)
T ss_pred             EEecCCCcccce
Confidence            999999999874

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=98.57  E-value=1.9e-07  Score=95.14  Aligned_cols=84  Identities=20%  Similarity=0.218  Sum_probs=63.8

Q ss_pred             cccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHH---HHHhcCCCCCccccceEEEeCCeeeEEEccc
Q 041300          631 CIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEV---QALTEIRHRNIVKFYGFCSHAQHSFLVYEFL  706 (716)
Q Consensus       631 ~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei---~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  706 (716)
                      +||+|+||.||++.. .+++.||+|.+.+....... ....+..|.   +.++...||+++++++++.+.+..++||||+
T Consensus         1 ~ig~g~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~   79 (278)
T cd05606           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQ-GETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLM   79 (278)
T ss_pred             CcccCCCeEEEEEEEecCCCEEEEEEeeccccccch-hHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCCEEEEEEecC
Confidence            489999999999964 45889999998753322111 122244443   3455568999999999999999999999999


Q ss_pred             CCCCHHhHh
Q 041300          707 ERGSLAAIL  715 (716)
Q Consensus       707 ~~GsL~~~l  715 (716)
                      ++|+|.+++
T Consensus        80 ~g~~L~~~l   88 (278)
T cd05606          80 NGGDLHYHL   88 (278)
T ss_pred             CCCcHHHHH
Confidence            999998875

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=98.57  E-value=1.8e-07  Score=99.55  Aligned_cols=90  Identities=21%  Similarity=0.343  Sum_probs=70.5

Q ss_pred             hcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC-----
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA-----  696 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~-----  696 (716)
                      ..+|...+.||+|+||.||++.. ..++.||||++.....  .....+.+.+|+.+++.++||||+++++++...     
T Consensus        23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~~~  100 (364)
T cd07875          23 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQ--NQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEE  100 (364)
T ss_pred             hcceeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCcccc--CchhHHHHHHHHHHHHhcCCCCccccceeecccccccc
Confidence            45788899999999999999964 4578999999875321  111346788999999999999999999988543     


Q ss_pred             -CeeeEEEcccCCCCHHhHh
Q 041300          697 -QHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       697 -~~~~lv~Ey~~~GsL~~~l  715 (716)
                       ...|+||||+++ +|.+++
T Consensus       101 ~~~~~lv~e~~~~-~l~~~~  119 (364)
T cd07875         101 FQDVYIVMELMDA-NLCQVI  119 (364)
T ss_pred             cCeEEEEEeCCCC-CHHHHH
Confidence             346999999976 565543

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=98.56  E-value=1.3e-07  Score=99.60  Aligned_cols=90  Identities=22%  Similarity=0.369  Sum_probs=70.7

Q ss_pred             hcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC-----
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA-----  696 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~-----  696 (716)
                      .+.|...+.||+|+||.||+|.. .++..||||++.....  .....+.+.+|++++++++||||+++++++...     
T Consensus        14 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~   91 (343)
T cd07878          14 PERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQ--SLIHARRTYRELRLLKHMKHENVIGLLDVFTPATSIEN   91 (343)
T ss_pred             hhhhhhheecccCCCeEEEEEEECCCCCEEEEEEeCchhh--hhHHHHHHHHHHHHHHhcCCCchhhhhhhhcccccccc
Confidence            45688889999999999999964 4678999999865321  111345678999999999999999999988543     


Q ss_pred             -CeeeEEEcccCCCCHHhHh
Q 041300          697 -QHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       697 -~~~~lv~Ey~~~GsL~~~l  715 (716)
                       ...++++||+ +++|.+++
T Consensus        92 ~~~~~~~~~~~-~~~l~~~~  110 (343)
T cd07878          92 FNEVYLVTNLM-GADLNNIV  110 (343)
T ss_pred             cCcEEEEeecC-CCCHHHHH
Confidence             3468999988 77887764

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=98.56  E-value=1.6e-07  Score=97.89  Aligned_cols=79  Identities=22%  Similarity=0.381  Sum_probs=63.1

Q ss_pred             ccccCCCceEEEEEEcC---CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEe--CCeeeEEEc
Q 041300          630 YCIGNGGHGSVYRAELP---SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSH--AQHSFLVYE  704 (716)
Q Consensus       630 ~~ig~g~~g~v~~~~~~---~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~--~~~~~lv~E  704 (716)
                      .+||+|+||+||+|...   ++..||+|.+....      ....+.+|++++++++|||||++++++..  +...++|||
T Consensus         7 ~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~------~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e   80 (317)
T cd07867           7 CKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTG------ISMSACREIALLRELKHPNVIALQKVFLSHSDRKVWLLFD   80 (317)
T ss_pred             eEeccCCCeeEEEEEecCCCccceEEEEEecCCC------CcHHHHHHHHHHHhCCCCCeeeEEEEEeccCCCeEEEEEe
Confidence            57999999999999754   35689999986531      22457899999999999999999999854  456799999


Q ss_pred             ccCCCCHHhHh
Q 041300          705 FLERGSLAAIL  715 (716)
Q Consensus       705 y~~~GsL~~~l  715 (716)
                      |+++ +|.+++
T Consensus        81 ~~~~-~l~~~~   90 (317)
T cd07867          81 YAEH-DLWHII   90 (317)
T ss_pred             eeCC-cHHHHH
Confidence            9885 666553

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=98.56  E-value=1.9e-07  Score=95.30  Aligned_cols=86  Identities=24%  Similarity=0.361  Sum_probs=67.7

Q ss_pred             CcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCC-CCCccccceEEEeC--CeeeE
Q 041300          626 FDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR-HRNIVKFYGFCSHA--QHSFL  701 (716)
Q Consensus       626 ~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~-H~niv~l~g~~~~~--~~~~l  701 (716)
                      |...+.||+|+||.||+|.. .++..||+|++.......   ......+|+..+.++. |+|++++++++.++  +..++
T Consensus         1 y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~---~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~l   77 (282)
T cd07831           1 YKILGKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSL---EQVNNLREIQALRRLSPHPNILRLIEVLFDRKTGRLAL   77 (282)
T ss_pred             CceEeeccccccceEEEEEEcCCCcEEEEEEehhccCCc---hhhhHHHHHHHHhhcCCCCCccceEEEEecCCCCcEEE
Confidence            44567899999999999964 468899999987532111   2234567999999885 99999999999887  78999


Q ss_pred             EEcccCCCCHHhHh
Q 041300          702 VYEFLERGSLAAIL  715 (716)
Q Consensus       702 v~Ey~~~GsL~~~l  715 (716)
                      ||||++ |++.+++
T Consensus        78 v~e~~~-~~l~~~l   90 (282)
T cd07831          78 VFELMD-MNLYELI   90 (282)
T ss_pred             EEecCC-ccHHHHH
Confidence            999997 5777665

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=98.56  E-value=2e-07  Score=96.69  Aligned_cols=89  Identities=28%  Similarity=0.480  Sum_probs=69.6

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC-----
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ-----  697 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~-----  697 (716)
                      ++|...+.||+|+||.||+|... ++..||||++........  ....+.+|++++++++|||+++++++|...+     
T Consensus        12 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~--~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~   89 (310)
T cd07865          12 SKYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEG--FPITALREIKILQLLKHENVVNLIEICRTKATPYNR   89 (310)
T ss_pred             hheEEEEEeecCCCEEEEEEEECCCCcEEEEEEEeccCCcCC--chhHHHHHHHHHHhCCCCCccceEEEEecccccccC
Confidence            46888899999999999999654 688999999864321111  2345678999999999999999999987654     


Q ss_pred             ---eeeEEEcccCCCCHHhHh
Q 041300          698 ---HSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       698 ---~~~lv~Ey~~~GsL~~~l  715 (716)
                         ..++||||+.+ +|.+++
T Consensus        90 ~~~~~~lv~e~~~~-~l~~~l  109 (310)
T cd07865          90 YKGSFYLVFEFCEH-DLAGLL  109 (310)
T ss_pred             CCceEEEEEcCCCc-CHHHHH
Confidence               34999999975 776654

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=98.54  E-value=2.9e-07  Score=90.29  Aligned_cols=87  Identities=36%  Similarity=0.604  Sum_probs=74.1

Q ss_pred             CcccccccCCCceEEEEEEcCC-CCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEc
Q 041300          626 FDAEYCIGNGGHGSVYRAELPS-GEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYE  704 (716)
Q Consensus       626 ~~~~~~ig~g~~g~v~~~~~~~-~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~E  704 (716)
                      |...+.||+|++|.||++...+ +..+|+|.+......   ...+.+.+|++.+.+++|+|++++++++...+..++|+|
T Consensus         1 ~~~~~~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~---~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e   77 (225)
T smart00221        1 YELGKKLGEGAFGKVYLARDKGTGELVAVKVLKKEKTE---KQREEFLREIRILKKLKHPNIVKLYGVFEDPEPLYLVME   77 (225)
T ss_pred             CceeeEeecCCCeEEEEEEEcCCCcEEEEEeeccccch---HHHHHHHHHHHHHHhCCCCChhhheeeeecCCceEEEEe
Confidence            4456789999999999997654 789999999764221   134678999999999999999999999998899999999


Q ss_pred             ccCCCCHHhHh
Q 041300          705 FLERGSLAAIL  715 (716)
Q Consensus       705 y~~~GsL~~~l  715 (716)
                      |+++++|.+++
T Consensus        78 ~~~~~~L~~~~   88 (225)
T smart00221       78 YCEGGDLFDYL   88 (225)
T ss_pred             ccCCCCHHHHH
Confidence            99999999876

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=98.54  E-value=1.6e-07  Score=98.78  Aligned_cols=90  Identities=29%  Similarity=0.479  Sum_probs=71.3

Q ss_pred             hcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeCC--e
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQ--H  698 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~~--~  698 (716)
                      ..+|...+.||+|+||.||+|... ++..||||++.......  .....+.+|+.++.++ +||||+++++++...+  .
T Consensus         6 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~--~~~~~~~~E~~~l~~l~~h~ni~~~~~~~~~~~~~~   83 (337)
T cd07852           6 LRKYEILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNA--TDAQRTFREIMFLQELGDHPNIVKLLNVIKAENDKD   83 (337)
T ss_pred             hhHHHHhHhhcCCCCeeEEEEEEcCCCeEEEEEeeccccCcc--hhhhhhhHHHHHHHHhcCCCCccceeeeeccCCCce
Confidence            356788889999999999999754 57899999986432111  1335678899999999 9999999999986543  5


Q ss_pred             eeEEEcccCCCCHHhHh
Q 041300          699 SFLVYEFLERGSLAAIL  715 (716)
Q Consensus       699 ~~lv~Ey~~~GsL~~~l  715 (716)
                      .++||||++ |+|.+++
T Consensus        84 ~~lv~e~~~-~~L~~~~   99 (337)
T cd07852          84 IYLVFEYME-TDLHAVI   99 (337)
T ss_pred             EEEEecccc-cCHHHHH
Confidence            799999998 5888765

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=98.54  E-value=1.9e-07  Score=98.94  Aligned_cols=90  Identities=21%  Similarity=0.336  Sum_probs=70.5

Q ss_pred             hhcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC---
Q 041300          622 ETNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ---  697 (716)
Q Consensus       622 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~---  697 (716)
                      ...+|...+.||+|+||.||++.. ..++.||||++.....  .....+.+.+|+.+++.++||||+++++++....   
T Consensus        15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~   92 (355)
T cd07874          15 VLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQ--NQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKSLE   92 (355)
T ss_pred             hhhceeEEEEeeecCCEEEEEEEecCCCceEEEEEeCCccc--ChHHHHHHHHHHHHHHHhCCCchhceeeeeecccccc
Confidence            346788899999999999999964 3578999999875321  1123467889999999999999999999986542   


Q ss_pred             ---eeeEEEcccCCCCHHhH
Q 041300          698 ---HSFLVYEFLERGSLAAI  714 (716)
Q Consensus       698 ---~~~lv~Ey~~~GsL~~~  714 (716)
                         ..++||||+++ ++.++
T Consensus        93 ~~~~~~lv~e~~~~-~l~~~  111 (355)
T cd07874          93 EFQDVYLVMELMDA-NLCQV  111 (355)
T ss_pred             ccceeEEEhhhhcc-cHHHH
Confidence               46999999976 56554

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=98.54  E-value=2e-07  Score=95.58  Aligned_cols=87  Identities=31%  Similarity=0.497  Sum_probs=65.3

Q ss_pred             CcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC---CCCCccccceEEEeC-----
Q 041300          626 FDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI---RHRNIVKFYGFCSHA-----  696 (716)
Q Consensus       626 ~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l---~H~niv~l~g~~~~~-----  696 (716)
                      |...+.||+|+||.||+|... +++.||+|.+........  ....+.+|+++++++   +||||+++++++...     
T Consensus         2 y~~~~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~~--~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~~~~   79 (288)
T cd07863           2 YEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDG--LPLSTVREVALLKRLEAFDHPNIVRLMDVCATSRTDRE   79 (288)
T ss_pred             ceEeeEEeecCCeEEEEEEECCCCcEEEEEEeccCcCCCC--CchHHHHHHHHHHHhhhcCCCCeeeeeeeeccccCCCC
Confidence            667788999999999999654 688999999875322111  223466777776655   799999999998652     


Q ss_pred             CeeeEEEcccCCCCHHhHh
Q 041300          697 QHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       697 ~~~~lv~Ey~~~GsL~~~l  715 (716)
                      ...++||||+++ +|.+++
T Consensus        80 ~~~~lv~e~~~~-~l~~~~   97 (288)
T cd07863          80 TKVTLVFEHVDQ-DLRTYL   97 (288)
T ss_pred             ceEEEEEccccc-CHHHHH
Confidence            357999999985 787765

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=98.54  E-value=1.5e-07  Score=98.81  Aligned_cols=89  Identities=26%  Similarity=0.383  Sum_probs=71.3

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEe----CCe
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSH----AQH  698 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~----~~~  698 (716)
                      .+|...++||+|+||.||+|.. .++..||+|++.......  ...+.+.+|+.++.+++|||||++++++..    ...
T Consensus         5 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~~--~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~   82 (334)
T cd07855           5 SRYKPIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVP--TLAKRTLRELKILRHFKHDNIIAIRDILRPPGADFKD   82 (334)
T ss_pred             hceeeeeeeecCCCeEEEEEEEcCCCCEEEEEEeccccccc--cchHHHHHHHHHHHhcCCCCccCHHHhccccCCCCce
Confidence            5688888999999999999964 468899999987532111  134567889999999999999999998753    346


Q ss_pred             eeEEEcccCCCCHHhHh
Q 041300          699 SFLVYEFLERGSLAAIL  715 (716)
Q Consensus       699 ~~lv~Ey~~~GsL~~~l  715 (716)
                      .++||||+. |+|.+++
T Consensus        83 ~~lv~e~~~-~~l~~~~   98 (334)
T cd07855          83 VYVVMDLME-SDLHHII   98 (334)
T ss_pred             EEEEEehhh-hhHHHHh
Confidence            799999996 6888776

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=98.54  E-value=2.6e-07  Score=97.41  Aligned_cols=96  Identities=25%  Similarity=0.378  Sum_probs=74.5

Q ss_pred             HHHHHhhcCCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEe
Q 041300          617 DEIVRETNDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSH  695 (716)
Q Consensus       617 ~~~~~~~~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~  695 (716)
                      .++...+++|...+.||+|+||.||+|. ..++..||||++.....  .....+.+.+|++++.+++||||+++++++..
T Consensus        10 ~~~~~~~~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~~Ei~~l~~l~h~~iv~~~~~~~~   87 (345)
T cd07877          10 KTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQ--SIIHAKRTYRELRLLKHMKHENVIGLLDVFTP   87 (345)
T ss_pred             HHHhhccCceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecCcch--hhHHHHHHHHHHHHHHHcCCCcccceeeeeee
Confidence            4455567889999999999999999996 45688999999875321  11134568899999999999999999998864


Q ss_pred             C------CeeeEEEcccCCCCHHhHh
Q 041300          696 A------QHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       696 ~------~~~~lv~Ey~~~GsL~~~l  715 (716)
                      .      ...++++|++ +|+|.+++
T Consensus        88 ~~~~~~~~~~~lv~~~~-~~~L~~~~  112 (345)
T cd07877          88 ARSLEEFNDVYLVTHLM-GADLNNIV  112 (345)
T ss_pred             cccccccccEEEEehhc-ccCHHHHH
Confidence            3      3467888876 77887764

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=98.54  E-value=1.8e-07  Score=97.28  Aligned_cols=84  Identities=19%  Similarity=0.241  Sum_probs=67.0

Q ss_pred             cccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEcccCC
Q 041300          629 EYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLER  708 (716)
Q Consensus       629 ~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~  708 (716)
                      .+..|.|+++.||++.. ++..||||++..... .. ...+.+.+|++++++++|+||+++++++...+..+++|||+++
T Consensus         7 ~~~~~~~~~v~~~~~~~-~~~~~avK~~~~~~~-~~-~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~e~~~~   83 (314)
T cd08216           7 GKCFEDLMIVHLAKHKP-TNTLVAVKKINLDSC-SK-EDLKLLQQEIITSRQLQHPNILPYVTSFIVDSELYVVSPLMAY   83 (314)
T ss_pred             hHhhcCCceEEEEEecC-CCCEEEEEEEecccc-ch-hHHHHHHHHHHHHHhcCCcchhhhhheeecCCeEEEEEeccCC
Confidence            33445566666666654 688999999875321 11 2446799999999999999999999999999999999999999


Q ss_pred             CCHHhHh
Q 041300          709 GSLAAIL  715 (716)
Q Consensus       709 GsL~~~l  715 (716)
                      |+|.+++
T Consensus        84 ~~l~~~l   90 (314)
T cd08216          84 GSCEDLL   90 (314)
T ss_pred             CCHHHHH
Confidence            9999876

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=98.52  E-value=1.5e-07  Score=96.12  Aligned_cols=87  Identities=30%  Similarity=0.492  Sum_probs=72.1

Q ss_pred             CcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEc
Q 041300          626 FDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYE  704 (716)
Q Consensus       626 ~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~E  704 (716)
                      |...+.||+|+||.||+|... +++.||+|.+..... .. ...+.+.+|++++++++|+|++++++++...+..++|||
T Consensus         1 y~~~~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~~-~~-~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e   78 (282)
T cd07829           1 YEKLEKLGEGTYGVVYKARDKKTGEIVALKKIRLDNE-EE-GIPSTALREISLLKELKHPNIVKLLDVIHTERKLYLVFE   78 (282)
T ss_pred             CeeehcccccCcceEEEeeecCCCcEEEEEEeccccc-cc-cccHHHHHHHHHHHhcCCCCHHHHHhhhhcCCceEEEec
Confidence            345678999999999999765 488999999976431 11 134568899999999999999999999999999999999


Q ss_pred             ccCCCCHHhHh
Q 041300          705 FLERGSLAAIL  715 (716)
Q Consensus       705 y~~~GsL~~~l  715 (716)
                      |++ ++|.+++
T Consensus        79 ~~~-~~l~~~i   88 (282)
T cd07829          79 YCD-MDLKKYL   88 (282)
T ss_pred             CcC-cCHHHHH
Confidence            998 5898876

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=98.51  E-value=2.4e-07  Score=97.35  Aligned_cols=89  Identities=26%  Similarity=0.433  Sum_probs=70.4

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC-----C
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA-----Q  697 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~-----~  697 (716)
                      ..|...+.||+|+||.||+|.. .++..||||++.......  .....+.+|+.++++++|+|++++++++...     .
T Consensus         5 ~~y~~~~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~~--~~~~~~~~E~~~l~~l~h~ni~~~~~~~~~~~~~~~~   82 (337)
T cd07858           5 TKYVPIKPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDNR--IDAKRTLREIKLLRHLDHENVIAIKDIMPPPHREAFN   82 (337)
T ss_pred             cceeEEEEeccCCCeEEEEEEecCCCCeEEEEEeccccccc--chhHHHHHHHHHHHhcCCCCccchHHheecccccccC
Confidence            4688888999999999999964 468899999987532111  1345677899999999999999999988654     2


Q ss_pred             eeeEEEcccCCCCHHhHh
Q 041300          698 HSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       698 ~~~lv~Ey~~~GsL~~~l  715 (716)
                      ..|+||||+. |+|.+++
T Consensus        83 ~~~lv~e~~~-~~L~~~~   99 (337)
T cd07858          83 DVYIVYELMD-TDLHQII   99 (337)
T ss_pred             cEEEEEeCCC-CCHHHHH
Confidence            4799999996 6787765

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=98.51  E-value=2.7e-07  Score=96.91  Aligned_cols=89  Identities=25%  Similarity=0.385  Sum_probs=70.6

Q ss_pred             hcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC----
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ----  697 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~----  697 (716)
                      .++|...+.||+|+||.||+|.. .++..||||++....   .......+.+|+.++++++|+|||++++++....    
T Consensus         4 ~~~y~i~~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~   80 (336)
T cd07849           4 GPRYQNLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFE---HQTFCQRTLREIKILRRFKHENIIGILDIIRPPSFESF   80 (336)
T ss_pred             ccceEEEEEEEecCCeEEEEEEEcCCCCeEEEEEecccc---cchhHHHHHHHHHHHHhCCCCCcCchhheeeccccccc
Confidence            35788899999999999999964 468899999986421   1113456889999999999999999999886543    


Q ss_pred             -eeeEEEcccCCCCHHhHh
Q 041300          698 -HSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       698 -~~~lv~Ey~~~GsL~~~l  715 (716)
                       ..|+|+||+++ +|.+++
T Consensus        81 ~~~~lv~e~~~~-~l~~~~   98 (336)
T cd07849          81 NDVYIVQELMET-DLYKLI   98 (336)
T ss_pred             ceEEEEehhccc-CHHHHH
Confidence             47999999975 776654

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>PHA03207 serine/threonine kinase US3; Provisional

Probab=98.50  E-value=2.8e-07  Score=98.98  Aligned_cols=82  Identities=18%  Similarity=0.222  Sum_probs=68.9

Q ss_pred             cCCcccccccCCCceEEEEEEcC---CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeee
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP---SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSF  700 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~---~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~  700 (716)
                      ..|...+.||+|+||.||++...   .+..||||.+...         +.+.+|++++++++|||||++++++......+
T Consensus        92 ~~y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~---------~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~  162 (392)
T PHA03207         92 MQYNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGG---------KTPGREIDILKTISHRAIINLIHAYRWKSTVC  162 (392)
T ss_pred             CceEEEEeecCCCCeEEEEEEEcCCccceeEEEEecccc---------ccHHHHHHHHHhcCCCCccceeeeEeeCCEEE
Confidence            46888999999999999999643   3568999987642         23568999999999999999999999999999


Q ss_pred             EEEcccCCCCHHhHh
Q 041300          701 LVYEFLERGSLAAIL  715 (716)
Q Consensus       701 lv~Ey~~~GsL~~~l  715 (716)
                      +||||+. |+|.+++
T Consensus       163 lv~e~~~-~~l~~~l  176 (392)
T PHA03207        163 MVMPKYK-CDLFTYV  176 (392)
T ss_pred             EEehhcC-CCHHHHH
Confidence            9999996 5787765

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=98.50  E-value=3.1e-07  Score=94.15  Aligned_cols=85  Identities=29%  Similarity=0.476  Sum_probs=68.5

Q ss_pred             CCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCC-CCCccccceEEEeCCeeeEE
Q 041300          625 DFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR-HRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~-H~niv~l~g~~~~~~~~~lv  702 (716)
                      +|.....||+|+||.||++.. .+++.||+|++......   .....+.+|+.++.++. |+|||++++++..++..+++
T Consensus         5 ~~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~---~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~~~~~~~~   81 (288)
T cd06616           5 DLKDLGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDE---KEQKRLLMDLDVVMRSSDCPYIVKFYGALFREGDCWIC   81 (288)
T ss_pred             HhHHHHHhCCCCceEEEEEEECCCCCEEEEEEehhccCh---HHHHHHHHHHHHHHHhcCCCCEeeeeeEEecCCcEEEE
Confidence            455567899999999999964 45889999998753221   24567899999999996 99999999999998899999


Q ss_pred             EcccCCCCHHh
Q 041300          703 YEFLERGSLAA  713 (716)
Q Consensus       703 ~Ey~~~GsL~~  713 (716)
                      |||++. ++.+
T Consensus        82 ~e~~~~-~l~~   91 (288)
T cd06616          82 MELMDI-SLDK   91 (288)
T ss_pred             EecccC-CHHH
Confidence            999874 4443

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=98.50  E-value=2.7e-08  Score=112.70  Aligned_cols=89  Identities=33%  Similarity=0.558  Sum_probs=75.1

Q ss_pred             CCcccccccCCCceEEEEE-EcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          625 DFDAEYCIGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~-~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      .+.....||.|.||+||.| ..++|...|||-++-....  ......+..|..++..++|||+|+++|+-.+.+..+|.|
T Consensus      1236 rWqrg~~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~~--~k~~~~i~eEm~vlE~lnHpNlV~YyGVEvHRekv~IFM 1313 (1509)
T KOG4645|consen 1236 RWQRGNFIGGGTFGKVYTAVNLDTGELLAVKEIKIQDSD--HKTFKLIAEEMKVLEGLNHPNLVRYYGVEVHREKVYIFM 1313 (1509)
T ss_pred             eeccccccCCcceeeeEEeecCCccchhhhhhhhcCccc--cccCcchHHHHHHHHhccCccccccCceeecHHHHHHHH
Confidence            4555678999999999999 4667999999988754322  113456889999999999999999999999999999999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      |||++|+|.+.+
T Consensus      1314 EyC~~GsLa~ll 1325 (1509)
T KOG4645|consen 1314 EYCEGGSLASLL 1325 (1509)
T ss_pred             HHhccCcHHHHH
Confidence            999999999876

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=98.49  E-value=4e-07  Score=96.39  Aligned_cols=90  Identities=23%  Similarity=0.406  Sum_probs=71.0

Q ss_pred             hcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC-----
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA-----  696 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~-----  696 (716)
                      ...|...+.||+|+||.||+|.. .+++.||||++......  .....++.+|++++++++|||++++++++...     
T Consensus        15 ~~~y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~   92 (353)
T cd07850          15 LKRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQN--VTHAKRAYRELVLMKLVNHKNIIGLLNVFTPQKSLEE   92 (353)
T ss_pred             hcceEEEEEeccCCCEEEEEEEECCCCCEEEEEecCccccC--hhHHHHHHHHHHHHHhcCCCCCcceeeeeccCCCccc
Confidence            46788899999999999999964 46889999998643211  11345678899999999999999999988643     


Q ss_pred             -CeeeEEEcccCCCCHHhHh
Q 041300          697 -QHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       697 -~~~~lv~Ey~~~GsL~~~l  715 (716)
                       ...|+||||+.+ +|.+++
T Consensus        93 ~~~~~lv~e~~~~-~l~~~~  111 (353)
T cd07850          93 FQDVYLVMELMDA-NLCQVI  111 (353)
T ss_pred             cCcEEEEEeccCC-CHHHHH
Confidence             246999999964 777654

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.49  E-value=5.7e-08  Score=93.91  Aligned_cols=92  Identities=23%  Similarity=0.301  Sum_probs=75.6

Q ss_pred             hcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL  701 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l  701 (716)
                      -++|+..+++|+|.||+|..++-+ .++.+|+|++++...-.. .....-..|-.+++..+||.+..+...+...+....
T Consensus       167 m~dFdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKeviiak-dEVAHTlTE~RVL~~~~HPFLt~LKYsFQt~drlCF  245 (516)
T KOG0690|consen  167 MEDFDFLKVLGKGTFGKVILCREKATGKLYAIKILKKEVIIAK-DEVAHTLTENRVLQNCRHPFLTSLKYSFQTQDRLCF  245 (516)
T ss_pred             cchhhHHHHhcCCccceEEEEeecccCceeehhhhhhhheeeh-HHhhhhhhHHHHHHhccCcHHHHhhhhhccCceEEE
Confidence            357889999999999999999643 688999999987433221 123345678889999999999999999999999999


Q ss_pred             EEcccCCCCHHhHh
Q 041300          702 VYEFLERGSLAAIL  715 (716)
Q Consensus       702 v~Ey~~~GsL~~~l  715 (716)
                      ||||+.||+|+-+|
T Consensus       246 VMeyanGGeLf~HL  259 (516)
T KOG0690|consen  246 VMEYANGGELFFHL  259 (516)
T ss_pred             EEEEccCceEeeeh
Confidence            99999999998655

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=98.48  E-value=4.5e-07  Score=91.83  Aligned_cols=85  Identities=15%  Similarity=0.200  Sum_probs=63.3

Q ss_pred             hhcCCcccccc--cCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhc-CCCCCccccceEEEeCC
Q 041300          622 ETNDFDAEYCI--GNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTE-IRHRNIVKFYGFCSHAQ  697 (716)
Q Consensus       622 ~~~~~~~~~~i--g~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~-l~H~niv~l~g~~~~~~  697 (716)
                      ..++|...+.+  |+|+||.||++.. .++..+|+|.+......       +.  |+..... .+|||++++++++..++
T Consensus        12 ~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~-------~~--e~~~~~~~~~h~~iv~~~~~~~~~~   82 (267)
T PHA03390         12 FLKNCEIVKKLKLIDGKFGKVSVLKHKPTQKLFVQKIIKAKNFN-------AI--EPMVHQLMKDNPNFIKLYYSVTTLK   82 (267)
T ss_pred             HHHhhccccceeecCCCceEEEEEEEcCCCcEEEEEEEehhhcc-------hh--hHHHHHHhhcCCCEEEEEEEEecCC
Confidence            34456665555  9999999999964 46788999998653211       11  2222211 27999999999999999


Q ss_pred             eeeEEEcccCCCCHHhHh
Q 041300          698 HSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       698 ~~~lv~Ey~~~GsL~~~l  715 (716)
                      ..++||||+++|+|.+++
T Consensus        83 ~~~iv~e~~~~~~L~~~l  100 (267)
T PHA03390         83 GHVLIMDYIKDGDLFDLL  100 (267)
T ss_pred             eeEEEEEcCCCCcHHHHH
Confidence            999999999999999886

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=98.48  E-value=3.8e-07  Score=93.96  Aligned_cols=87  Identities=26%  Similarity=0.469  Sum_probs=69.5

Q ss_pred             cCCcccccccCCCceEEEEEEcCC-CCEEEEEEccccCCccchhhHHHHHHHHHHHhcCC-CCCccccceEEEeCCeeeE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELPS-GEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR-HRNIVKFYGFCSHAQHSFL  701 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~~-~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~-H~niv~l~g~~~~~~~~~l  701 (716)
                      ++|...+.||+|+||.||+|...+ +..||||++......   ....++.+|++++.+.+ ||||++++++|.++...|+
T Consensus        15 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~---~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~   91 (296)
T cd06618          15 NDLENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNK---EENKRILMDLDVVLKSHDCPYIVKCYGYFITDSDVFI   91 (296)
T ss_pred             chheeeeEeeccCCeEEEEEEECCCCeEEEEEEEeccCCh---HHHHHHHHHHHHHHhccCCCchHhhheeeecCCeEEE
Confidence            457788899999999999998764 889999998753211   13456777888777775 9999999999999999999


Q ss_pred             EEcccCCCCHHhH
Q 041300          702 VYEFLERGSLAAI  714 (716)
Q Consensus       702 v~Ey~~~GsL~~~  714 (716)
                      ||||+++ ++.++
T Consensus        92 v~e~~~~-~l~~l  103 (296)
T cd06618          92 CMELMST-CLDKL  103 (296)
T ss_pred             EeeccCc-CHHHH
Confidence            9999864 55543

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.48  E-value=2.3e-08  Score=104.60  Aligned_cols=82  Identities=26%  Similarity=0.401  Sum_probs=66.9

Q ss_pred             cccccCCCceEEEEEEcCC-CCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEcccC
Q 041300          629 EYCIGNGGHGSVYRAELPS-GEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLE  707 (716)
Q Consensus       629 ~~~ig~g~~g~v~~~~~~~-~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~  707 (716)
                      ...+|.|+||+||++.-++ +...|.|+|...    ......+|.-||+|+..++||+||++++.|...+..||+.|||.
T Consensus        37 iGELGDGAFGKVyKA~nket~~lAAaKvIetk----seEELEDylVEIeILa~CdHP~ivkLl~ayy~enkLwiliEFC~  112 (1187)
T KOG0579|consen   37 IGELGDGAFGKVYKAVNKETKLLAAAKVIETK----SEEELEDYLVEIEILAECDHPVIVKLLSAYYFENKLWILIEFCG  112 (1187)
T ss_pred             HhhhcCccchhhhhhhcccchhhhhhhhhccc----chhHHhhhhhhhhhhhcCCChHHHHHHHHHhccCceEEEEeecC
Confidence            3458999999999996544 445578888642    11245679999999999999999999999999999999999999


Q ss_pred             CCCHHhH
Q 041300          708 RGSLAAI  714 (716)
Q Consensus       708 ~GsL~~~  714 (716)
                      ||..+..
T Consensus       113 GGAVDai  119 (1187)
T KOG0579|consen  113 GGAVDAI  119 (1187)
T ss_pred             CchHhHH
Confidence            9987643

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=98.47  E-value=2.1e-07  Score=88.35  Aligned_cols=82  Identities=26%  Similarity=0.265  Sum_probs=57.7

Q ss_pred             ccccCCCceEEEEEEcCCCCEEEEEEccccCCccchh----------------------hHHHHHHHHHHHhcCCCCCcc
Q 041300          630 YCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIA----------------------DQKEFLTEVQALTEIRHRNIV  687 (716)
Q Consensus       630 ~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~----------------------~~~~~~~ei~~l~~l~H~niv  687 (716)
                      ..||+|+||.||+|..++|+.||||+++.........                      ......+|++.+.++.|+++.
T Consensus         3 ~~ig~G~~~~Vy~a~~~~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~v~   82 (190)
T cd05147           3 GCISTGKEANVYHATTANGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVTAGIP   82 (190)
T ss_pred             CccccccceEEEEEECCCCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence            5799999999999987789999999997642211100                      001123599999999988875


Q ss_pred             ccceEEEeCCeeeEEEcccCCCCHHh
Q 041300          688 KFYGFCSHAQHSFLVYEFLERGSLAA  713 (716)
Q Consensus       688 ~l~g~~~~~~~~~lv~Ey~~~GsL~~  713 (716)
                      ....+..  ...++||||++++++..
T Consensus        83 ~p~~~~~--~~~~iVmE~i~g~~l~~  106 (190)
T cd05147          83 CPEPILL--KSHVLVMEFIGDDGWAA  106 (190)
T ss_pred             CCcEEEe--cCCEEEEEEeCCCCCcc
Confidence            5444332  23489999999987643

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=98.47  E-value=5e-08  Score=93.90  Aligned_cols=91  Identities=22%  Similarity=0.353  Sum_probs=70.4

Q ss_pred             hcCCcccccccCCCceEEEEEEcC---C--CCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEe-C
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELP---S--GEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSH-A  696 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~---~--~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~-~  696 (716)
                      -..|.....||+|.||.||++.-.   +  ...+|+|+++..+....  -...-.||+.++++++|||+|.+..++.. +
T Consensus        23 l~~ye~ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~tG--iS~SAcREiaL~REl~h~nvi~Lv~Vfl~~d  100 (438)
T KOG0666|consen   23 LFEYEGIGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGTG--ISMSACREIALLRELKHPNVISLVKVFLSHD  100 (438)
T ss_pred             HHHhhccceecccccceeeEeeeccCCcccchhhHHHHHhccCCCCC--cCHHHHHHHHHHHHhcCCcchhHHHHHhccC
Confidence            346778888999999999999432   2  23689999986532222  23446789999999999999999999876 6


Q ss_pred             CeeeEEEcccCCCCHHhHhC
Q 041300          697 QHSFLVYEFLERGSLAAILS  716 (716)
Q Consensus       697 ~~~~lv~Ey~~~GsL~~~l~  716 (716)
                      ...++++||.+. +|.+.||
T Consensus       101 ~~v~l~fdYAEh-DL~~II~  119 (438)
T KOG0666|consen  101 KKVWLLFDYAEH-DLWHIIK  119 (438)
T ss_pred             ceEEEEehhhhh-hHHHHHH
Confidence            788999999998 7766653

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=98.46  E-value=5.7e-07  Score=94.71  Aligned_cols=88  Identities=25%  Similarity=0.399  Sum_probs=69.6

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC-----
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ-----  697 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~-----  697 (716)
                      ..|...+.||+|+||.||+|.. .++..||||++........  ....+.+|++++++++||||+++++++....     
T Consensus        15 ~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~--~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~   92 (342)
T cd07879          15 ERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEI--FAKRAYRELTLLKHMQHENVIGLLDVFTSAVSGDEF   92 (342)
T ss_pred             cceEEEEEeeecCCeEEEEEEeCCCCcEEEEEEecCcccccc--chhHHHHHHHHHHhcCCCCccchhheecccccCCCC
Confidence            5788889999999999999974 4689999999875321111  2356889999999999999999999986543     


Q ss_pred             -eeeEEEcccCCCCHHhH
Q 041300          698 -HSFLVYEFLERGSLAAI  714 (716)
Q Consensus       698 -~~~lv~Ey~~~GsL~~~  714 (716)
                       ..++|+||+.. +|.++
T Consensus        93 ~~~~lv~e~~~~-~l~~~  109 (342)
T cd07879          93 QDFYLVMPYMQT-DLQKI  109 (342)
T ss_pred             ceEEEEeccccc-CHHHH
Confidence             45899999975 66654

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=98.44  E-value=5.4e-07  Score=92.24  Aligned_cols=87  Identities=30%  Similarity=0.483  Sum_probs=67.8

Q ss_pred             CcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC---CCCCccccceEEEeCCe---
Q 041300          626 FDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI---RHRNIVKFYGFCSHAQH---  698 (716)
Q Consensus       626 ~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l---~H~niv~l~g~~~~~~~---  698 (716)
                      |...+.||+|+||.||+|... ++..||+|++...... .. ....+.+|++++.++   +|+|++++++++...+.   
T Consensus         1 y~~~~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~-~~-~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~   78 (287)
T cd07838           1 YEELAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSE-EG-IPLSTLREIALLKQLESFEHPNIVRLLDVCHGPRTDRE   78 (287)
T ss_pred             CeEEEEecccCceEEEEEEECCCCCEEEEEEecccccc-ch-hhhhHHHHHHHHHHhhccCCCCcceEEEEEeeccCCCC
Confidence            456678999999999999875 4889999999753321 11 234577788777655   69999999999988776   


Q ss_pred             --eeEEEcccCCCCHHhHh
Q 041300          699 --SFLVYEFLERGSLAAIL  715 (716)
Q Consensus       699 --~~lv~Ey~~~GsL~~~l  715 (716)
                        .++||||+.+ +|.+++
T Consensus        79 ~~~~l~~e~~~~-~l~~~l   96 (287)
T cd07838          79 LKLTLVFEHVDQ-DLATYL   96 (287)
T ss_pred             ceeEEEehhccc-CHHHHH
Confidence              8999999974 787765

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=98.43  E-value=3.6e-07  Score=95.77  Aligned_cols=87  Identities=28%  Similarity=0.474  Sum_probs=71.3

Q ss_pred             CcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC-----ee
Q 041300          626 FDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ-----HS  699 (716)
Q Consensus       626 ~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~-----~~  699 (716)
                      |...+.||+|+||.||+|... .+..||||++.....  .....+.+.+|+++++.++|+||+++++++...+     ..
T Consensus         2 y~i~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~--~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~   79 (330)
T cd07834           2 YELLKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFD--DLIDAKRILREIKLLRHLRHENIIGLLDILRPPSPEDFNDV   79 (330)
T ss_pred             ceeeeeecCCCCeEEEEEEeCCCCcEEEEEeeccccc--cchhhhhHHHHHHHHHhcCCcchhhhhhhhcccCcccccce
Confidence            667789999999999999754 488999999875321  1123467999999999999999999999998765     78


Q ss_pred             eEEEcccCCCCHHhHh
Q 041300          700 FLVYEFLERGSLAAIL  715 (716)
Q Consensus       700 ~lv~Ey~~~GsL~~~l  715 (716)
                      |+||||+++ +|.+++
T Consensus        80 ~lv~e~~~~-~l~~~l   94 (330)
T cd07834          80 YIVTELMET-DLHKVI   94 (330)
T ss_pred             EEEecchhh-hHHHHH
Confidence            999999984 787765

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>PRK14879 serine/threonine protein kinase; Provisional

Probab=98.43  E-value=6.6e-07  Score=87.03  Aligned_cols=85  Identities=13%  Similarity=0.176  Sum_probs=67.8

Q ss_pred             ccccCCCceEEEEEEcCCCCEEEEEEccccCCccc----hhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEcc
Q 041300          630 YCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQ----IADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEF  705 (716)
Q Consensus       630 ~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~----~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  705 (716)
                      +.||+|++|.||+|.. .|..|+||+.........    ......+.+|++++..++|++++....++...+..++||||
T Consensus         2 ~~l~~G~~~~vy~~~~-~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~   80 (211)
T PRK14879          2 KLIKRGAEAEIYLGDF-LGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKAGVNVPAVYFVDPENFIIVMEY   80 (211)
T ss_pred             cccccCceEEEEEEee-CCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHCCCCCCeEEEEeCCCCEEEEEE
Confidence            4689999999999987 677899998654322111    11234588999999999999999888888888888999999


Q ss_pred             cCCCCHHhHh
Q 041300          706 LERGSLAAIL  715 (716)
Q Consensus       706 ~~~GsL~~~l  715 (716)
                      +++++|.+++
T Consensus        81 ~~G~~L~~~~   90 (211)
T PRK14879         81 IEGEPLKDLI   90 (211)
T ss_pred             eCCcCHHHHH
Confidence            9999998875

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.42  E-value=8e-09  Score=109.84  Aligned_cols=161  Identities=26%  Similarity=0.220  Sum_probs=93.3

Q ss_pred             cccccCCCCCCEEEccCCccccc---cC--cc-----------------------cC---CCCCCcEEEccCCcccccCC
Q 041300          350 PREIGNMSQLQALDLSLNHIVGE---IP--KE-----------------------LG---KLNSLTKLILRGNQLTGRLP  398 (716)
Q Consensus       350 ~~~~~~l~~L~~L~L~~n~l~~~---~~--~~-----------------------~~---~l~~L~~L~L~~N~l~~~~~  398 (716)
                      |-.+..+.+|++|.+.++.+...   .+  ..                       +.   ....|...+.++|++. ..-
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~mD  180 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-LMD  180 (1096)
T ss_pred             CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-hHH
Confidence            44667788999999999887531   00  00                       00   0123455556666665 344


Q ss_pred             cccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCC
Q 041300          399 TEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKS  478 (716)
Q Consensus       399 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~  478 (716)
                      ..+.-++.|+.|+|++|+++...  .+..++.|++|||++|.+....--...+. .|+.|.+++|.++..  ..+.++++
T Consensus       181 ~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~tL--~gie~Lks  255 (1096)
T KOG1859|consen  181 ESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTTL--RGIENLKS  255 (1096)
T ss_pred             HHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhh-hheeeeecccHHHhh--hhHHhhhh
Confidence            44555666777777777776433  56667777777777777763222222222 367777777766532  23456677


Q ss_pred             CCEEECcCCcCcccCC-cCCcCCCCCCEEEccCCccccc
Q 041300          479 LEKLNLSHNNLSGLIP-NCFEGMHGLSIIDISDNQLQGP  516 (716)
Q Consensus       479 L~~L~ls~N~l~~~~~-~~~~~~~~L~~l~ls~N~l~~~  516 (716)
                      |+.||+++|-|.+... ..+..+..|+.|+|.||++.+.
T Consensus       256 L~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  256 LYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             hhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence            7777777776654211 1133445566777777777653

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=98.42  E-value=5.3e-07  Score=92.12  Aligned_cols=87  Identities=32%  Similarity=0.535  Sum_probs=71.1

Q ss_pred             CcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEc
Q 041300          626 FDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYE  704 (716)
Q Consensus       626 ~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~E  704 (716)
                      |...+.||+|++|.||+|... ++..+|+|++....... . ....+.+|++++++++|+|++++++++..++..++|+|
T Consensus         1 y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~-~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e   78 (283)
T cd05118           1 YQKLGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESE-G-IPKTALREIKLLKELNHPNIIKLLDVFRHKGDLYLVFE   78 (283)
T ss_pred             CccceeeecCCCceEEEEEcCCCCcEEEEEEeccccccc-h-hHHHHHHHHHHHHHhcCCCcchHHHhhccCCCEEEEEe
Confidence            345567999999999999764 68899999987532211 1 34578899999999999999999999999999999999


Q ss_pred             ccCCCCHHhHh
Q 041300          705 FLERGSLAAIL  715 (716)
Q Consensus       705 y~~~GsL~~~l  715 (716)
                      |+++ ++.+++
T Consensus        79 ~~~~-~l~~~l   88 (283)
T cd05118          79 FMDT-DLYKLI   88 (283)
T ss_pred             ccCC-CHHHHH
Confidence            9985 777765

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=98.42  E-value=6e-07  Score=86.40  Aligned_cols=90  Identities=12%  Similarity=0.123  Sum_probs=72.0

Q ss_pred             hcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHH------HHHHHHHHHhcCCCCCccccceEEEeC
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQK------EFLTEVQALTEIRHRNIVKFYGFCSHA  696 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~------~~~~ei~~l~~l~H~niv~l~g~~~~~  696 (716)
                      ...|...+++|.|+||.||.... ++..+|||.+.+.....+. ...      .|.+|+..+.+++||+|..+..++...
T Consensus        30 ~~~y~~~~~l~~~~f~~v~l~~~-~~~~~iiKvf~~~~~~~~~-~~~~f~~g~~~e~Ea~~l~rL~~~GI~~~~d~~~~~  107 (232)
T PRK10359         30 SYNIKTIKVFRNIDDTKVSLIDT-DYGKYILKVFAPKVKRTER-FLKSFVKGDYYENLIVQTDRVRSEGLASLNDFYLLA  107 (232)
T ss_pred             hCceEEEEEecCCCceEEEEEec-CCCcEEEEEechhcCchHH-HHHhhhhhHHHHHHHHHHHHHHHCCCCcceEeeeec
Confidence            56799999999999999999765 5668999999764433322 112      268999999999999999999886543


Q ss_pred             --------CeeeEEEcccCCCCHHhH
Q 041300          697 --------QHSFLVYEFLERGSLAAI  714 (716)
Q Consensus       697 --------~~~~lv~Ey~~~GsL~~~  714 (716)
                              +..++||||++|.+|.++
T Consensus       108 ~~~~~~~~~~~~lvmEyi~G~tL~~~  133 (232)
T PRK10359        108 ERKTLRYAHTYIMLIEYIEGVELNDM  133 (232)
T ss_pred             ccccccccCCeEEEEEEECCccHHHh
Confidence                    357899999999999775

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=98.41  E-value=6e-07  Score=94.55  Aligned_cols=87  Identities=30%  Similarity=0.446  Sum_probs=69.9

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC------
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA------  696 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~------  696 (716)
                      ..|...+.||+|+||.||+|.. .++..||+|++.....    ...+.+.+|++++++++||||+++++++...      
T Consensus         5 ~~y~~~~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~~----~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~   80 (342)
T cd07854           5 SRYMDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDP----QSVKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTE   80 (342)
T ss_pred             cceEEEEEecCCCCEEEEEEEECCCCcEEEEEEEecCCC----chHHHHHHHHHHHHhcCCCcchhhHhhhccccccccc
Confidence            4688889999999999999964 4688999999865322    1346688999999999999999999876543      


Q ss_pred             --------CeeeEEEcccCCCCHHhHh
Q 041300          697 --------QHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       697 --------~~~~lv~Ey~~~GsL~~~l  715 (716)
                              ...++||||++ ++|.+++
T Consensus        81 ~~~~~~~~~~~~lv~e~~~-~~L~~~~  106 (342)
T cd07854          81 DVGSLTELNSVYIVQEYME-TDLANVL  106 (342)
T ss_pred             ccccccccceEEEEeeccc-ccHHHHH
Confidence                    35789999998 5887664

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=98.39  E-value=9.4e-07  Score=85.07  Aligned_cols=84  Identities=14%  Similarity=0.212  Sum_probs=65.2

Q ss_pred             cccCCCceEEEEEEcCCCCEEEEEEccccCCccc----hhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEccc
Q 041300          631 CIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQ----IADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFL  706 (716)
Q Consensus       631 ~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~----~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  706 (716)
                      .||+|+||.||+|.+ ++..|+||+.........    ......+.+|++++..++|+++.....++...+..++||||+
T Consensus         1 ~ig~G~~~~vy~~~~-~~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~~   79 (199)
T TIGR03724         1 LIAKGAEAIIYLGDF-LGLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAGVNTPVVYDVDPDNKTIVMEYI   79 (199)
T ss_pred             CCCCCceEEEEEeec-CCccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEE
Confidence            389999999999986 578899998654221111    112356789999999999998877777777777789999999


Q ss_pred             CCCCHHhHh
Q 041300          707 ERGSLAAIL  715 (716)
Q Consensus       707 ~~GsL~~~l  715 (716)
                      ++++|.+++
T Consensus        80 ~g~~l~~~~   88 (199)
T TIGR03724        80 EGKPLKDVI   88 (199)
T ss_pred             CCccHHHHH
Confidence            999998765

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=98.38  E-value=5.1e-07  Score=95.13  Aligned_cols=90  Identities=22%  Similarity=0.376  Sum_probs=71.9

Q ss_pred             hcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCe---
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQH---  698 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~---  698 (716)
                      .++|.....||+|+||.||+|... ++..||||++..... .. ...+.+.+|+.++++++|||++++++++...+.   
T Consensus        14 ~~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~-~~-~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~   91 (343)
T cd07851          14 PDRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQ-SA-IHAKRTYRELRLLKHMDHENVIGLLDVFTPASSLED   91 (343)
T ss_pred             cCceEEEEEeccCCceEEEEEEECCCCcEEEEEecccccc-hh-hHHHHHHHHHHHHHhccCCCHHHHHHHhhccccccc
Confidence            456888899999999999999764 578999999865321 11 134567889999999999999999998866554   


Q ss_pred             ---eeEEEcccCCCCHHhHh
Q 041300          699 ---SFLVYEFLERGSLAAIL  715 (716)
Q Consensus       699 ---~~lv~Ey~~~GsL~~~l  715 (716)
                         .++|+||+ +++|.+++
T Consensus        92 ~~~~~lv~e~~-~~~L~~~~  110 (343)
T cd07851          92 FQDVYLVTHLM-GADLNNIV  110 (343)
T ss_pred             cccEEEEEecC-CCCHHHHH
Confidence               89999998 56898775

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.36  E-value=1.1e-08  Score=108.78  Aligned_cols=181  Identities=28%  Similarity=0.268  Sum_probs=101.4

Q ss_pred             CcccCCCCccCEEEeeCCcCcccCCCccccc-cccEEEccCCc--CccccC---ccccC---CCCccEEEecCCcccccC
Q 041300          207 PLSVGNLTNLKSLGLMDNHLSGSIPPSFGNS-MLTWLTLSGNH--FTGYLP---HNICR---GGLLEAFIVSENHFQGTI  277 (716)
Q Consensus       207 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~--l~~~~~---~~~~~---~~~L~~L~l~~n~l~~~~  277 (716)
                      |+++..+.+|+.|.+.++.+.. .-...+.. .|++|-.++--  +..++.   ..+++   ...|...+++.|++. ..
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~-~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~m  179 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLST-AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-LM  179 (1096)
T ss_pred             CceeccccceeeEEecCcchhh-hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-hH
Confidence            5567777889999999888764 11111111 34444332210  000100   01111   234566666666665 34


Q ss_pred             CcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCC
Q 041300          278 PESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMS  357 (716)
Q Consensus       278 p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  357 (716)
                      ..++.-++.|+.|+|++|+++..  +.+..++.|++|||++|.++...--...++. |+.|++.+|.++..  ..+.++.
T Consensus       180 D~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~Lk  254 (1096)
T KOG1859|consen  180 DESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLK  254 (1096)
T ss_pred             HHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhh
Confidence            45556666777777777777643  2566677777777777777644333333343 77777777776643  3456677


Q ss_pred             CCCEEEccCCcccccc-CcccCCCCCCcEEEccCCccc
Q 041300          358 QLQALDLSLNHIVGEI-PKELGKLNSLTKLILRGNQLT  394 (716)
Q Consensus       358 ~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~  394 (716)
                      +|+.||+++|-|.+.- -..++.+..|+.|+|.+|.+-
T Consensus       255 sL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  255 SLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            7777777777665421 112344566677777777664

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=98.36  E-value=8.1e-07  Score=92.15  Aligned_cols=89  Identities=25%  Similarity=0.430  Sum_probs=69.0

Q ss_pred             hcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC----
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ----  697 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~----  697 (716)
                      .++|...++||+|+||.||+|... +++.||||++......+.  ....+.+|++++++++||||+++++++....    
T Consensus         7 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   84 (311)
T cd07866           7 LRDYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDG--FPITALREIKILKKLKHPNVVPLIDMAVERPDKSK   84 (311)
T ss_pred             cccEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCCC--cchhHHHHHHHHHhcCCCCccchhhheeccccccc
Confidence            467889999999999999999754 588999999865322111  2245778999999999999999999875533    


Q ss_pred             ----eeeEEEcccCCCCHHhH
Q 041300          698 ----HSFLVYEFLERGSLAAI  714 (716)
Q Consensus       698 ----~~~lv~Ey~~~GsL~~~  714 (716)
                          ..++||||++. ++.+.
T Consensus        85 ~~~~~~~lv~~~~~~-~l~~~  104 (311)
T cd07866          85 RKRGSVYMVTPYMDH-DLSGL  104 (311)
T ss_pred             ccCceEEEEEecCCc-CHHHH
Confidence                46999999975 56554

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=98.34  E-value=2e-06  Score=83.00  Aligned_cols=81  Identities=38%  Similarity=0.644  Sum_probs=69.6

Q ss_pred             ccCCCceEEEEEEcCC-CCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEcccCCCC
Q 041300          632 IGNGGHGSVYRAELPS-GEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGS  710 (716)
Q Consensus       632 ig~g~~g~v~~~~~~~-~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~Gs  710 (716)
                      ||+|++|.||++.... ++.++||++.......   ..+.+.+|++.+++++|++++++++++......++|+||+++++
T Consensus         1 l~~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~---~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~~~e~~~~~~   77 (215)
T cd00180           1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSS---LLEELLREIEILKKLNHPNIVKLYGVFEDENHLYLVMEYCEGGS   77 (215)
T ss_pred             CCcCCceEEEEEEecCCCcEEEEEEeccccchh---HHHHHHHHHHHHHhcCCCCeeeEeeeeecCCeEEEEEecCCCCc
Confidence            6899999999998754 8899999987632111   23679999999999999999999999999899999999999999


Q ss_pred             HHhHh
Q 041300          711 LAAIL  715 (716)
Q Consensus       711 L~~~l  715 (716)
                      |.+++
T Consensus        78 l~~~~   82 (215)
T cd00180          78 LKDLL   82 (215)
T ss_pred             HHHHH
Confidence            99876

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=98.33  E-value=1.4e-07  Score=94.89  Aligned_cols=91  Identities=27%  Similarity=0.367  Sum_probs=70.5

Q ss_pred             cCCcccccccCCCceEEEEE-EcCCCCEEEEEEccccCCccchhhH-----HHHHHHHHHHhcCCCCCccccceEEEeCC
Q 041300          624 NDFDAEYCIGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQ-----KEFLTEVQALTEIRHRNIVKFYGFCSHAQ  697 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~-~~~~~~~vavK~l~~~~~~~~~~~~-----~~~~~ei~~l~~l~H~niv~l~g~~~~~~  697 (716)
                      +.|-....+|+|||..||++ .+...+.||||+-...  ..|....     +.-.+|-.+.+.++||-||++|+|+.-+.
T Consensus       463 ~RYLlLhLLGrGGFSEVyKAFDl~EqRYvAvKIHqlN--K~WrdEKKeNYhKHAcREyrIHKeLDHpRIVKlYDyfslDt  540 (775)
T KOG1151|consen  463 DRYLLLHLLGRGGFSEVYKAFDLTEQRYVAVKIHQLN--KNWRDEKKENYHKHACREYRIHKELDHPRIVKLYDYFSLDT  540 (775)
T ss_pred             HHHHHHHHhccccHHHHHHhcccchhheeeEeeehhc--cchhhHhhhhHHHHHHHHHhhhhccCcceeeeeeeeeeecc
Confidence            34666778999999999999 4556788999976432  2333222     22468889999999999999999997654


Q ss_pred             -eeeEEEcccCCCCHHhHhC
Q 041300          698 -HSFLVYEFLERGSLAAILS  716 (716)
Q Consensus       698 -~~~lv~Ey~~~GsL~~~l~  716 (716)
                       ...-|+|||+|.+|+-||+
T Consensus       541 dsFCTVLEYceGNDLDFYLK  560 (775)
T KOG1151|consen  541 DSFCTVLEYCEGNDLDFYLK  560 (775)
T ss_pred             ccceeeeeecCCCchhHHHH
Confidence             5678999999999998873

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=98.32  E-value=2.8e-07  Score=87.16  Aligned_cols=93  Identities=20%  Similarity=0.333  Sum_probs=75.4

Q ss_pred             hcCCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchh----hHHHHHHHHHHHhcC-CCCCccccceEEEeC
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIA----DQKEFLTEVQALTEI-RHRNIVKFYGFCSHA  696 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~----~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~  696 (716)
                      -..|...+++|.|....|.++. -.+|...|||++..........    ..++-++|+++++++ .||+|+.+.++|..+
T Consensus        16 y~~y~pkeilgrgvss~vrRci~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~GHP~II~l~D~yes~   95 (411)
T KOG0599|consen   16 YAKYEPKEILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVMGHPYIIDLQDVYESD   95 (411)
T ss_pred             HhhcChHHHhcccchhhhhhhhhcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhcCCCcEEEeeeeccCc
Confidence            3467888899999999998884 4568889999997543322211    234467899999988 699999999999999


Q ss_pred             CeeeEEEcccCCCCHHhHh
Q 041300          697 QHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       697 ~~~~lv~Ey~~~GsL~~~l  715 (716)
                      ...|+|+|.|+.|.|+|+|
T Consensus        96 sF~FlVFdl~prGELFDyL  114 (411)
T KOG0599|consen   96 AFVFLVFDLMPRGELFDYL  114 (411)
T ss_pred             chhhhhhhhcccchHHHHh
Confidence            9999999999999999997

>PTZ00284 protein kinase; Provisional

Probab=98.30  E-value=1.1e-06  Score=96.80  Aligned_cols=92  Identities=21%  Similarity=0.238  Sum_probs=68.0

Q ss_pred             HHHHhhcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCC------Cccccc
Q 041300          618 EIVRETNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHR------NIVKFY  690 (716)
Q Consensus       618 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~------niv~l~  690 (716)
                      ++...+..|...++||+|+||+||+|.. ..++.||||+++...   .  ...++..|++++.+++|.      ++++++
T Consensus       123 ~~~~~~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~~---~--~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~  197 (467)
T PTZ00284        123 DIDVSTQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVP---K--YTRDAKIEIQFMEKVRQADPADRFPLMKIQ  197 (467)
T ss_pred             ccccCCCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEecch---h--hHHHHHHHHHHHHHHhhcCcccCcceeeeE
Confidence            3344567899999999999999999964 457899999986421   1  234566677777766554      588888


Q ss_pred             eEEEeC-CeeeEEEcccCCCCHHhHh
Q 041300          691 GFCSHA-QHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       691 g~~~~~-~~~~lv~Ey~~~GsL~~~l  715 (716)
                      +++... ...++||||+ +|+|.+++
T Consensus       198 ~~~~~~~~~~~iv~~~~-g~~l~~~l  222 (467)
T PTZ00284        198 RYFQNETGHMCIVMPKY-GPCLLDWI  222 (467)
T ss_pred             EEEEcCCceEEEEEecc-CCCHHHHH
Confidence            888764 4678999988 67888765

>PHA03210 serine/threonine kinase US3; Provisional

Probab=98.28  E-value=9.2e-07  Score=97.82  Aligned_cols=91  Identities=15%  Similarity=0.239  Sum_probs=65.0

Q ss_pred             hcCCcccccccCCCceEEEEEEcCC--CCEEEEEE--------------ccccCCccchhhHHHHHHHHHHHhcCCCCCc
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELPS--GEVVAVKK--------------FHSSIPCDQIADQKEFLTEVQALTEIRHRNI  686 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~~--~~~vavK~--------------l~~~~~~~~~~~~~~~~~ei~~l~~l~H~ni  686 (716)
                      ..+|...+.||+|+||+||++....  +..+++|.              +.+.. .........+.+|++++++++||||
T Consensus       147 ~~~Y~ii~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~-~~~~~~~~~~~~Ei~il~~l~HpnI  225 (501)
T PHA03210        147 LAHFRVIDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRV-KAGSRAAIQLENEILALGRLNHENI  225 (501)
T ss_pred             hhccEEEeEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHHh-hcchHHHHHHHHHHHHHHhCCCCCc
Confidence            4679999999999999999986432  22222221              11100 0111134568899999999999999


Q ss_pred             cccceEEEeCCeeeEEEcccCCCCHHhHh
Q 041300          687 VKFYGFCSHAQHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       687 v~l~g~~~~~~~~~lv~Ey~~~GsL~~~l  715 (716)
                      |++++++...+..|+|+||+. ++|.+++
T Consensus       226 v~l~~~~~~~~~~~lv~e~~~-~~l~~~l  253 (501)
T PHA03210        226 LKIEEILRSEANTYMITQKYD-FDLYSFM  253 (501)
T ss_pred             CcEeEEEEECCeeEEEEeccc-cCHHHHH
Confidence            999999999999999999885 4666553

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=98.28  E-value=2.4e-06  Score=81.44  Aligned_cols=80  Identities=23%  Similarity=0.218  Sum_probs=58.4

Q ss_pred             ccccCCCceEEEEEEcCCCCEEEEEEccccCCccch----------------------hhHHHHHHHHHHHhcCCCCCcc
Q 041300          630 YCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQI----------------------ADQKEFLTEVQALTEIRHRNIV  687 (716)
Q Consensus       630 ~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~----------------------~~~~~~~~ei~~l~~l~H~niv  687 (716)
                      ..||+|+||+||+|...+|+.||||+++........                      .....+.+|.+.+.+++|+++.
T Consensus         3 ~~ig~G~~~~Vy~a~~~~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~   82 (190)
T cd05145           3 GCISTGKEANVYHARTGDGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLYEAGVP   82 (190)
T ss_pred             ceeecCCCcEEEEEEcCCCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            569999999999998768999999999764211000                      0012246889999999999986


Q ss_pred             ccceEEEeCCeeeEEEcccCCCCH
Q 041300          688 KFYGFCSHAQHSFLVYEFLERGSL  711 (716)
Q Consensus       688 ~l~g~~~~~~~~~lv~Ey~~~GsL  711 (716)
                      ....+...  ..++||||++++++
T Consensus        83 ~p~~~~~~--~~~lVmE~~~g~~~  104 (190)
T cd05145          83 VPEPILLK--KNVLVMEFIGDDGS  104 (190)
T ss_pred             CceEEEec--CCEEEEEEecCCCc
Confidence            65555433  34899999999854

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=98.27  E-value=1.8e-06  Score=96.35  Aligned_cols=92  Identities=14%  Similarity=0.167  Sum_probs=68.4

Q ss_pred             hcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCcc----chhhHHHHHHHHHHHhcCCCCCccccceEEEeCCe
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCD----QIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQH  698 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~----~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~  698 (716)
                      ...|...+.||+|+||.||+|.+.+.. +++|+........    .......+.+|++++..++|++++....++..++.
T Consensus       332 ~~~~~~~~~iG~G~~g~Vy~~~~~~~~-~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~  410 (535)
T PRK09605        332 KRRKIPDHLIGKGAEADIKKGEYLGRD-AVIKERVPKGYRHPELDERLRTERTRAEARLLSEARRAGVPTPVIYDVDPEE  410 (535)
T ss_pred             ccccCccceeccCCcEEEEEEeecCcc-ceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhcccCCCeeEEEEEeCCC
Confidence            344567889999999999999875543 4444322111111    11123568899999999999999998888888788


Q ss_pred             eeEEEcccCCCCHHhHh
Q 041300          699 SFLVYEFLERGSLAAIL  715 (716)
Q Consensus       699 ~~lv~Ey~~~GsL~~~l  715 (716)
                      .++||||+++++|.+++
T Consensus       411 ~~lv~E~~~g~~L~~~l  427 (535)
T PRK09605        411 KTIVMEYIGGKDLKDVL  427 (535)
T ss_pred             CEEEEEecCCCcHHHHH
Confidence            89999999999999876

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=98.26  E-value=4.6e-07  Score=95.24  Aligned_cols=92  Identities=17%  Similarity=0.272  Sum_probs=75.0

Q ss_pred             hcCCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL  701 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l  701 (716)
                      ..-|...+.||-|+||+|..+. .++...+|.|.+++..+.... .......|-.||.+.+.+.||+|+..+.+.+..|+
T Consensus       628 KSmFvkik~iGvGAFGeV~Lv~KvDT~~lYAmKTLrKaDVl~rn-QvaHVKAERDILAEADn~WVVrLyySFQDkdnLYF  706 (1034)
T KOG0608|consen  628 KSMFVKIKTIGVGAFGEVCLVRKVDTRALYAMKTLRKADVLMRN-QVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYF  706 (1034)
T ss_pred             ccceEEEeeecccccceeEEEeecchhhHHHHhhhHHHHHHhhh-hhhhhhhhhhhHhhcCCcceEEEEEEeccCCceEE
Confidence            3457778889999999999995 455667899999875432221 23347789999999999999999999999999999


Q ss_pred             EEcccCCCCHHhHh
Q 041300          702 VYEFLERGSLAAIL  715 (716)
Q Consensus       702 v~Ey~~~GsL~~~l  715 (716)
                      ||||++||++-.+|
T Consensus       707 VMdYIPGGDmMSLL  720 (1034)
T KOG0608|consen  707 VMDYIPGGDMMSLL  720 (1034)
T ss_pred             EEeccCCccHHHHH
Confidence            99999999987765

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=98.26  E-value=1.1e-06  Score=91.75  Aligned_cols=92  Identities=23%  Similarity=0.252  Sum_probs=72.1

Q ss_pred             cCCcccccccCCCceEEEEEEcCC-CCEEEEEEccccCCcc--chhh--HHHHHHHHHHHhcCC---CCCccccceEEEe
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELPS-GEVVAVKKFHSSIPCD--QIAD--QKEFLTEVQALTEIR---HRNIVKFYGFCSH  695 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~~-~~~vavK~l~~~~~~~--~~~~--~~~~~~ei~~l~~l~---H~niv~l~g~~~~  695 (716)
                      .+|.....+|+|+||+|+.+..+. ...|+||.|.+.+...  |..+  -.....||.+|.+++   |+||+++++++++
T Consensus       561 s~yttlq~lG~GAyGkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NIlKlLdfFEd  640 (772)
T KOG1152|consen  561 SDYTTLQPLGEGAYGKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHENILKLLDFFED  640 (772)
T ss_pred             ccceeeeeccccccceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccchhhhhheeec
Confidence            468888999999999999997654 5578999997643221  1101  113568999999997   9999999999999


Q ss_pred             CCeeeEEEcc-cCCCCHHhHh
Q 041300          696 AQHSFLVYEF-LERGSLAAIL  715 (716)
Q Consensus       696 ~~~~~lv~Ey-~~~GsL~~~l  715 (716)
                      ++.+||+||- =++-+|+++|
T Consensus       641 dd~yyl~te~hg~gIDLFd~I  661 (772)
T KOG1152|consen  641 DDYYYLETEVHGEGIDLFDFI  661 (772)
T ss_pred             CCeeEEEecCCCCCcchhhhh
Confidence            9999999995 4667888876

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=98.25  E-value=3.9e-07  Score=86.03  Aligned_cols=83  Identities=33%  Similarity=0.470  Sum_probs=65.9

Q ss_pred             cccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHH-HhcCCCCCccccceEEEeCCeeeEEEc
Q 041300          627 DAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQA-LTEIRHRNIVKFYGFCSHAQHSFLVYE  704 (716)
Q Consensus       627 ~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~-l~~l~H~niv~l~g~~~~~~~~~lv~E  704 (716)
                      +....||.|+||+|++.. .+.|+..|||+++....  .. +.+++..|.+. |+.-+.||||+++|++-.++..|+.||
T Consensus        67 qdlg~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~--~k-eq~rll~e~d~~mks~~cp~IVkfyGa~F~EGdcWiCME  143 (361)
T KOG1006|consen   67 QDLGEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNI--EK-EQKRLLMEHDTVMKSSNCPNIVKFYGALFSEGDCWICME  143 (361)
T ss_pred             HHHHHhcCCcchhhhhhhcCccCcEEEEEEeeeccc--hH-HHHHHHHHHHHHHhhcCCcHHHHHhhhhhcCCceeeeHH
Confidence            334569999999999995 45789999999986432  22 45779999876 555589999999999999999999999


Q ss_pred             ccCCCCHHh
Q 041300          705 FLERGSLAA  713 (716)
Q Consensus       705 y~~~GsL~~  713 (716)
                      .|.- |++.
T Consensus       144 LMd~-SlDk  151 (361)
T KOG1006|consen  144 LMDI-SLDK  151 (361)
T ss_pred             HHhh-hHHH
Confidence            9865 5543

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=98.24  E-value=1.5e-06  Score=92.67  Aligned_cols=86  Identities=26%  Similarity=0.448  Sum_probs=71.2

Q ss_pred             CCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCC-CC-----CccccceEEEeCC
Q 041300          625 DFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR-HR-----NIVKFYGFCSHAQ  697 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~-H~-----niv~l~g~~~~~~  697 (716)
                      .|...++||+|+||+|.+|. ..+++.||||+++....     -..+-..||.+|..++ |.     |+|++++|+...+
T Consensus       187 rY~V~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~k~-----f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~fr~  261 (586)
T KOG0667|consen  187 RYEVLEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNKKR-----FLRQAQIEIRILELLNKHDPDDKYNIVRMLDYFYFRN  261 (586)
T ss_pred             EEEEEEEecccccceeEEEEecCCCcEEEEEeeccChH-----HHHHHHHHHHHHHHHhccCCCCCeeEEEeeecccccc
Confidence            57888999999999999994 55689999999976321     3345667889998886 33     8999999999999


Q ss_pred             eeeEEEcccCCCCHHhHhC
Q 041300          698 HSFLVYEFLERGSLAAILS  716 (716)
Q Consensus       698 ~~~lv~Ey~~~GsL~~~l~  716 (716)
                      ..+||+|.+.. +|.++|+
T Consensus       262 HlciVfELL~~-NLYellK  279 (586)
T KOG0667|consen  262 HLCIVFELLST-NLYELLK  279 (586)
T ss_pred             ceeeeehhhhh-hHHHHHH
Confidence            99999998776 8988874

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=98.23  E-value=4.9e-07  Score=102.24  Aligned_cols=72  Identities=29%  Similarity=0.471  Sum_probs=56.7

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCe
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQH  698 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~  698 (716)
                      .+|....++|+||||.||+++-+ ||+.+|||+|....  ... ......+|+.++++++|||+|+++....+...
T Consensus       479 ~DFEEL~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~~--s~~-~~skI~rEVk~LArLnHpNVVRYysAWVEs~~  551 (1351)
T KOG1035|consen  479 NDFEELELLGKGGFGSVVKVRNKLDGREYAIKKIPLKA--SDK-LYSKILREVKLLARLNHPNVVRYYSAWVESTA  551 (1351)
T ss_pred             hhhHHHHHhcCCCCceEEEEeecccchhhhhhhccCch--HHH-HHHHHHHHHHHHhhcCCcceeeeehhhhccCC
Confidence            46777789999999999999633 89999999998642  221 33457899999999999999999877655433

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=98.22  E-value=6.3e-07  Score=83.91  Aligned_cols=88  Identities=22%  Similarity=0.390  Sum_probs=74.5

Q ss_pred             cCCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC-----C
Q 041300          624 NDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA-----Q  697 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~-----~  697 (716)
                      ..|...+.+|+|||..||.++ ..++..+|+|++.-..    ..+.+.-++|++..++++|||++++++++..+     .
T Consensus        21 ~Ryri~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~----~~~~e~~~rEid~~rkf~s~~vl~l~dh~l~~~~D~~~   96 (302)
T KOG2345|consen   21 KRYRIQRLLGEGGFSFVDLVKGLSTGHLYALKKILCHS----QEDIEEALREIDNHRKFNSPNVLRLVDHQLREEKDGKH   96 (302)
T ss_pred             ceEEEeeeecCCCceeeeeecccCcccchhhheeeccc----hHHHHHHHHHHHHHHhhCCcchHHHHHHHHHhhccCce
Confidence            468888999999999999995 6678899999987532    22557789999999999999999999988543     3


Q ss_pred             eeeEEEcccCCCCHHhHh
Q 041300          698 HSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       698 ~~~lv~Ey~~~GsL~~~l  715 (716)
                      +.||++.|-..|+|.|.+
T Consensus        97 ~~yll~Pyy~~Gsl~d~i  114 (302)
T KOG2345|consen   97 EAYLLLPYYKRGSLLDEI  114 (302)
T ss_pred             eEEEEeehhccccHHHHH
Confidence            589999999999999876

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.22  E-value=1.6e-07  Score=89.92  Aligned_cols=56  Identities=25%  Similarity=0.321  Sum_probs=26.8

Q ss_pred             CCCCCEEEcccCcCccc-CcccccCCCCCCEEEccCCccccccCc------ccCCCCCCcEEE
Q 041300          332 CPKLGTLNVSMNNITGG-IPREIGNMSQLQALDLSLNHIVGEIPK------ELGKLNSLTKLI  387 (716)
Q Consensus       332 l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~  387 (716)
                      +|.+.-|+|+.|+|... --+.+.++++|..|.+++|.+.+....      .++.+++++.|+
T Consensus       223 ~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN  285 (418)
T KOG2982|consen  223 FPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN  285 (418)
T ss_pred             CCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence            34444455555555422 112344555555555555555432211      244566666655

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=98.22  E-value=2.7e-06  Score=84.39  Aligned_cols=72  Identities=19%  Similarity=0.195  Sum_probs=59.1

Q ss_pred             CCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEcccCCCCHHh
Q 041300          635 GGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAA  713 (716)
Q Consensus       635 g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~GsL~~  713 (716)
                      |.||+||++.- .+++.||+|++...         .++.+|...+....|||++++++++.+.+..++||||+++|+|.+
T Consensus         4 g~~~~v~~~~~~~~~~~~~~K~i~~~---------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~   74 (237)
T cd05576           4 GVIDKVLLVMDTRTQQTFILKGLRKS---------SEYSRERLTIIPHCVPNMVCLHKYIVSEDSVFLVLQHAEGGKLWS   74 (237)
T ss_pred             cccceEEEEEEccCCcEEEEEeecch---------hhhhhHHHHHHhcCCCceeehhhheecCCeEEEEEecCCCCCHHH
Confidence            89999999964 46889999998652         123445555556679999999999999999999999999999988


Q ss_pred             Hh
Q 041300          714 IL  715 (716)
Q Consensus       714 ~l  715 (716)
                      ++
T Consensus        75 ~l   76 (237)
T cd05576          75 HI   76 (237)
T ss_pred             HH
Confidence            75

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=98.21  E-value=3.6e-06  Score=83.46  Aligned_cols=77  Identities=29%  Similarity=0.523  Sum_probs=66.0

Q ss_pred             CceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEcccCCCCHHhH
Q 041300          636 GHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAI  714 (716)
Q Consensus       636 ~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~GsL~~~  714 (716)
                      +||.||+|... +++.||+|++.......   ..+.+.+|++.+++++|+|++++++++......++|+||+++|+|.++
T Consensus         1 ~~g~v~~~~~~~~~~~~~~k~~~~~~~~~---~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~   77 (244)
T smart00220        1 SFGKVYLARDKKTGKLVAIKVIKKEKIKK---KRERILREISILKKLKHPNIVRLYDVFEDEDKLYLVMEYCDGGDLFDL   77 (244)
T ss_pred             CceEEEEEEECCCCcEEEEEEeccccccc---HHHHHHHHHHHHHhCCCCcHHHHHhheeeCCEEEEEEeCCCCCCHHHH
Confidence            58999999875 48899999987632211   157899999999999999999999999999999999999999999987


Q ss_pred             h
Q 041300          715 L  715 (716)
Q Consensus       715 l  715 (716)
                      +
T Consensus        78 ~   78 (244)
T smart00220       78 L   78 (244)
T ss_pred             H
Confidence            5

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=98.21  E-value=4.2e-06  Score=87.76  Aligned_cols=88  Identities=26%  Similarity=0.345  Sum_probs=66.9

Q ss_pred             CCcccccccCCCceEEEEEEcC-C--CCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeC----
Q 041300          625 DFDAEYCIGNGGHGSVYRAELP-S--GEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHA----  696 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~~-~--~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~----  696 (716)
                      +|...+.||+|+||.||++... .  +..||||++......  ....+.+.+|+++++++ +|||||++++++...    
T Consensus         1 ~y~~~~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~--~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~   78 (332)
T cd07857           1 RYELIKELGQGAYGIVCSARNAETSEEETVAIKKITNVFSK--KILAKRALRELKLLRHFRGHKNITCLYDMDIVFPGNF   78 (332)
T ss_pred             CceEEEEccccCCeEEEEEEeCCCCcCceEEEEEecccccc--chhHHHHHHHHHHHHHhcCCCChheeeeeeeeccccC
Confidence            3667788999999999999754 3  678999998643211  11345688999999999 599999999976443    


Q ss_pred             CeeeEEEcccCCCCHHhHh
Q 041300          697 QHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       697 ~~~~lv~Ey~~~GsL~~~l  715 (716)
                      ...|+++||+. ++|.+++
T Consensus        79 ~~~~~~~e~~~-~~L~~~l   96 (332)
T cd07857          79 NELYLYEELME-ADLHQII   96 (332)
T ss_pred             CcEEEEEeccc-CCHHHHH
Confidence            34689999987 5888765

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=98.21  E-value=3.2e-07  Score=92.90  Aligned_cols=92  Identities=23%  Similarity=0.307  Sum_probs=75.9

Q ss_pred             hcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL  701 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l  701 (716)
                      ...|..-++||+||||.||-+... +|..+|.|++.+...... .+...-.+|-.++.+++.+.||.+-.++++.+...+
T Consensus       184 ~n~F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~KKRiKkr-~ge~maLnEk~iL~kV~s~FiVslaYAfeTkd~LCl  262 (591)
T KOG0986|consen  184 KNTFRVYRVLGKGGFGEVCACQVRATGKMYACKKLDKKRIKKR-KGETMALNEKQILEKVSSPFIVSLAYAFETKDALCL  262 (591)
T ss_pred             ccceeeeEEEecccccceeEEEEecchhhHHHHHHHHHHHHHh-hhhHHhhHHHHHHHHhccCcEEEEeeeecCCCceEE
Confidence            356888899999999999999654 589999999976332221 133456789999999999999999999999999999


Q ss_pred             EEcccCCCCHHhHh
Q 041300          702 VYEFLERGSLAAIL  715 (716)
Q Consensus       702 v~Ey~~~GsL~~~l  715 (716)
                      |+..|.||+|.-+|
T Consensus       263 VLtlMNGGDLkfHi  276 (591)
T KOG0986|consen  263 VLTLMNGGDLKFHI  276 (591)
T ss_pred             EEEeecCCceeEEe
Confidence            99999999997655

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=98.18  E-value=5.5e-07  Score=83.11  Aligned_cols=84  Identities=18%  Similarity=0.417  Sum_probs=70.8

Q ss_pred             hcCCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCC-CCCccccceEEEeCC--e
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR-HRNIVKFYGFCSHAQ--H  698 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~-H~niv~l~g~~~~~~--~  698 (716)
                      .++|+..+.+|+|.|.+|+.|. ..+.+.++||++++.       ..+...+|+.++..++ ||||+++++...++.  .
T Consensus        37 ~ddYeivrk~GRGKYSEVFeg~~~~~~eK~ViKiLKPV-------kkkKIkREikIL~nL~gg~NIi~L~DiV~Dp~Skt  109 (338)
T KOG0668|consen   37 QDDYEIVRKVGRGKYSEVFEGINITNNEKCVIKILKPV-------KKKKIKREIKILQNLRGGPNIIKLLDIVKDPESKT  109 (338)
T ss_pred             cchHHHHHHHcCccHhhHhcccccCCCceEEEeeechH-------HHHHHHHHHHHHHhccCCCCeeehhhhhcCccccC
Confidence            3568888999999999999994 557788999999873       3467889999999997 999999999998765  4


Q ss_pred             eeEEEcccCCCCHHh
Q 041300          699 SFLVYEFLERGSLAA  713 (716)
Q Consensus       699 ~~lv~Ey~~~GsL~~  713 (716)
                      +.||+||+.|-+...
T Consensus       110 paLiFE~v~n~Dfk~  124 (338)
T KOG0668|consen  110 PSLIFEYVNNTDFKQ  124 (338)
T ss_pred             chhHhhhhccccHHH
Confidence            689999999977543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.17  E-value=6.1e-08  Score=82.08  Aligned_cols=58  Identities=36%  Similarity=0.496  Sum_probs=22.8

Q ss_pred             CCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcC
Q 041300          358 QLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKF  417 (716)
Q Consensus       358 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  417 (716)
                      .++.|+|++|.|+ .+|..+..++.|+.|+++.|.+. ..|..+..+.+|-.||..+|.+
T Consensus        78 t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~  135 (177)
T KOG4579|consen   78 TATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENAR  135 (177)
T ss_pred             hhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCcc
Confidence            3344444444443 33333444444444444444443 2333333333444444444433

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.16  E-value=3.7e-07  Score=91.15  Aligned_cols=91  Identities=21%  Similarity=0.316  Sum_probs=71.1

Q ss_pred             cCCcccccccCCCceEEEEEEcCC-CCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeCCeeeE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELPS-GEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHSFL  701 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~~-~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~~~~~l  701 (716)
                      .+|....+||+|+||+|..++.+. .+.+|||++++...-+.. +.+.-+.|-.++.-. +-|.+|+++..+.+-+..|.
T Consensus       349 tDFnFl~VlGKGSFGKVlLaerkgtdELyAiKiLkKDViiQdD-Dvectm~EKrvLAL~~kppFL~qlHScFQTmDRLyF  427 (683)
T KOG0696|consen  349 TDFNFLMVLGKGSFGKVLLAERKGTDELYAIKILKKDVIIQDD-DVECTMVEKRVLALPGKPPFLVQLHSCFQTMDRLYF  427 (683)
T ss_pred             cccceEEEeccCccceeeeecccCcchhhhhhhhccceeeecC-cccceehhhhheecCCCCchHHHHHHHhhhhhheee
Confidence            479999999999999999997543 568999999875543322 333344555555544 68899999999999999999


Q ss_pred             EEcccCCCCHHhHh
Q 041300          702 VYEFLERGSLAAIL  715 (716)
Q Consensus       702 v~Ey~~~GsL~~~l  715 (716)
                      ||||+.+|+|--.+
T Consensus       428 VMEyvnGGDLMyhi  441 (683)
T KOG0696|consen  428 VMEYVNGGDLMYHI  441 (683)
T ss_pred             EEEEecCchhhhHH
Confidence            99999999997554

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=98.16  E-value=9.5e-07  Score=93.43  Aligned_cols=90  Identities=21%  Similarity=0.346  Sum_probs=66.7

Q ss_pred             CcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCe--eeEE
Q 041300          626 FDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQH--SFLV  702 (716)
Q Consensus       626 ~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~--~~lv  702 (716)
                      .....+||+|+|-+||+|.- .+|..||=-.++-....+.....+.|..|+.+++.++|||||+++.+..+...  .-+|
T Consensus        42 ~k~~evLGrGafKtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~NIirfy~SW~d~~n~~in~i  121 (632)
T KOG0584|consen   42 LKFDEVLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPNIIRFYDSWVDTDNKTINFI  121 (632)
T ss_pred             eehhhhcccccceeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCceeeeeeheecCCCceeeee
Confidence            34566899999999999953 34667762111111111222245779999999999999999999998877554  6799


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      +|.|..|+|+.|+
T Consensus       122 TEL~TSGtLr~Y~  134 (632)
T KOG0584|consen  122 TELFTSGTLREYR  134 (632)
T ss_pred             eecccCCcHHHHH
Confidence            9999999999986

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.09  E-value=4.2e-07  Score=87.17  Aligned_cols=65  Identities=22%  Similarity=0.280  Sum_probs=39.6

Q ss_pred             CCCCEEECCCCcCccccc-hhccCCCCCCEEECcCCcCcccC-CcCCcCCCCCCEEEccCCcccccC
Q 041300          453 VQLSELDASHNLFGGEIP-FQICSLKSLEKLNLSHNNLSGLI-PNCFEGMHGLSIIDISDNQLQGPV  517 (716)
Q Consensus       453 ~~L~~L~ls~N~l~~~~p-~~~~~l~~L~~L~ls~N~l~~~~-~~~~~~~~~L~~l~ls~N~l~~~~  517 (716)
                      +++..+-+..|.+...-. ..+...+.+..|+|+.|+|...- -+.+.++++|..|.+++|++..++
T Consensus       199 pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l  265 (418)
T KOG2982|consen  199 PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL  265 (418)
T ss_pred             ccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence            455556666665543221 22334566667788888776432 245667788888888888876543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.07  E-value=2e-07  Score=78.97  Aligned_cols=86  Identities=27%  Similarity=0.413  Sum_probs=47.2

Q ss_pred             cCCCCCCEEEccCCccccccCcccC-CCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCC
Q 041300          354 GNMSQLQALDLSLNHIVGEIPKELG-KLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLH  432 (716)
Q Consensus       354 ~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  432 (716)
                      .....|...+|++|.+. .+|..|. ..+.++.|+|++|.|+ .+|..+..++.|+.|+++.|.+. ..|..+..+.+|-
T Consensus        50 ~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~  126 (177)
T KOG4579|consen   50 SKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLD  126 (177)
T ss_pred             hCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHH
Confidence            33445555566666665 3333332 3345666666666665 44555666666666666666665 4455555555555


Q ss_pred             EEECcCCcCc
Q 041300          433 YLGLSNNQFV  442 (716)
Q Consensus       433 ~L~Ls~N~l~  442 (716)
                      .|+..+|.+.
T Consensus       127 ~Lds~~na~~  136 (177)
T KOG4579|consen  127 MLDSPENARA  136 (177)
T ss_pred             HhcCCCCccc
Confidence            5555555544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.04  E-value=9.1e-07  Score=83.80  Aligned_cols=136  Identities=20%  Similarity=0.163  Sum_probs=58.3

Q ss_pred             CCCCCCCEEEccCCccccccCCC----CCCCCCCCEEEcccCcCcccCccc-------------ccCCCCCCEEEccCCc
Q 041300          306 GLYPNLTFIDLSRNNFYGEISSN----WGKCPKLGTLNVSMNNITGGIPRE-------------IGNMSQLQALDLSLNH  368 (716)
Q Consensus       306 ~~~~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~-------------~~~l~~L~~L~L~~n~  368 (716)
                      -.+|.|+..+||.|.|....|..    ++..+.|.+|.|++|.+...-...             ..+-+.|++.....|+
T Consensus        89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR  168 (388)
T COG5238          89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR  168 (388)
T ss_pred             hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence            34455555555555554333322    223344555555555443111111             1233455555555555


Q ss_pred             cccccCc-----ccCCCCCCcEEEccCCcccccC-----CcccCCCCCCCEEEccCCcCCccC----chhhcCcCCCCEE
Q 041300          369 IVGEIPK-----ELGKLNSLTKLILRGNQLTGRL-----PTEIGSLIELEYLDFSANKFNNSV----PESLGNLLKLHYL  434 (716)
Q Consensus       369 l~~~~~~-----~~~~l~~L~~L~L~~N~l~~~~-----~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L  434 (716)
                      +. ..|.     .+..-..|+.+.+..|.|...-     -..+..+.+|+.|||..|-++..-    ...+..++.|+.|
T Consensus       169 le-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL  247 (388)
T COG5238         169 LE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL  247 (388)
T ss_pred             hc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence            54 1221     1222245555555555443110     001233455555555555554221    1223334445555


Q ss_pred             ECcCCcCc
Q 041300          435 GLSNNQFV  442 (716)
Q Consensus       435 ~Ls~N~l~  442 (716)
                      .+.+|-++
T Consensus       248 ~lnDClls  255 (388)
T COG5238         248 RLNDCLLS  255 (388)
T ss_pred             cccchhhc
Confidence            55555444

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=98.03  E-value=1.1e-05  Score=77.38  Aligned_cols=86  Identities=21%  Similarity=0.166  Sum_probs=61.3

Q ss_pred             CCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccch------------------hhHHHHHHHHHHHhcCCCCC-
Q 041300          625 DFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQI------------------ADQKEFLTEVQALTEIRHRN-  685 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~------------------~~~~~~~~ei~~l~~l~H~n-  685 (716)
                      .|...+.||+|+||.||++..++|+.||||++.........                  .....+.+|..++..+.|++ 
T Consensus        16 ~~~~~~~i~~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i   95 (198)
T cd05144          16 VESLGNQIGVGKESDVYLALDPDGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAALKALYEEGF   95 (198)
T ss_pred             hhhcCCccccCcceEEEEEEcCCCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHHHHHHHcCC
Confidence            46677889999999999998888999999987643210000                  01123678888999998874 


Q ss_pred             -ccccceEEEeCCeeeEEEcccCCCCHHhH
Q 041300          686 -IVKFYGFCSHAQHSFLVYEFLERGSLAAI  714 (716)
Q Consensus       686 -iv~l~g~~~~~~~~~lv~Ey~~~GsL~~~  714 (716)
                       +++.++    ....++||||+++++|.+.
T Consensus        96 ~v~~~~~----~~~~~lv~e~~~g~~L~~~  121 (198)
T cd05144          96 PVPKPID----WNRHAVVMEYIDGVELYRV  121 (198)
T ss_pred             CCCceee----cCCceEEEEEeCCcchhhc
Confidence             333332    3456899999999998764

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.02  E-value=2.2e-06  Score=83.40  Aligned_cols=90  Identities=22%  Similarity=0.303  Sum_probs=71.1

Q ss_pred             hcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeCCeee
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHSF  700 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~~~~~  700 (716)
                      -.+|+..++||+|+|++|..+++. +.+.+|+|++++....++. +..-.+.|-.++... +||.+|.++.++.++...|
T Consensus       249 l~df~ll~vigrgsyakvl~~~~~~t~qiyamkvvkkel~ndde-didwvqtek~vfe~asn~pflvglhscfqtesrlf  327 (593)
T KOG0695|consen  249 LQDFDLLRVIGRGSYAKVLLVRLKKTDQIYAMKVVKKELVNDDE-DIDWVQTEKHVFEQASNNPFLVGLHSCFQTESRLF  327 (593)
T ss_pred             cccceeeeeecCcchhhhhheehcccceeeehhhHHHHhcCCcc-cchhHHhhHHHHHhccCCCeEEehhhhhcccceEE
Confidence            357899999999999999999765 4678899999875443332 334455666555544 8999999999999999999


Q ss_pred             EEEcccCCCCHHh
Q 041300          701 LVYEFLERGSLAA  713 (716)
Q Consensus       701 lv~Ey~~~GsL~~  713 (716)
                      .|.||+++|+|--
T Consensus       328 fvieyv~ggdlmf  340 (593)
T KOG0695|consen  328 FVIEYVNGGDLMF  340 (593)
T ss_pred             EEEEEecCcceee
Confidence            9999999999853

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.99  E-value=6.8e-07  Score=84.66  Aligned_cols=216  Identities=18%  Similarity=0.190  Sum_probs=122.7

Q ss_pred             ccCCCCCceeecccccccCCCCccc----cCCcCCcEEEeeccccc---ccccccccCCCCCceeeCCCCCcccCCCCcc
Q 041300          144 VCQLSSIEELFLYSNHLNGSLPPFL----GNLSNIVRLYINNNSLS---GSILTNIGNLKFLFELDLSFLPLSVGNLTNL  216 (716)
Q Consensus       144 ~~~l~~L~~L~L~~N~l~~~~p~~~----~~l~~L~~L~L~~n~l~---~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~L  216 (716)
                      +..+..+..++|++|.|.......+    ++-.+|+..+++.-...   ..++.++.           .+-..+.++++|
T Consensus        26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~-----------~Ll~aLlkcp~l   94 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLV-----------MLLKALLKCPRL   94 (388)
T ss_pred             HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHH-----------HHHHHHhcCCcc
Confidence            3446777888888887765444333    33445555544432111   01111110           112345678899


Q ss_pred             CEEEeeCCcCcccCCCcccc-----ccccEEEccCCcCccccCcc-------------ccCCCCccEEEecCCcccccCC
Q 041300          217 KSLGLMDNHLSGSIPPSFGN-----SMLTWLTLSGNHFTGYLPHN-------------ICRGGLLEAFIVSENHFQGTIP  278 (716)
Q Consensus       217 ~~L~l~~n~l~~~~~~~~~~-----~~L~~L~L~~n~l~~~~~~~-------------~~~~~~L~~L~l~~n~l~~~~p  278 (716)
                      +..+|++|.+....|+.+..     ..|.+|.|++|.+.-+.-..             ...-+.|+++++.+|++..-..
T Consensus        95 ~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~  174 (388)
T COG5238          95 QKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSK  174 (388)
T ss_pred             eeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcH
Confidence            99999999998777766532     37999999999765322111             2245778888888888864321


Q ss_pred             ----cccccCCCCcEEEccCCcCCCccc-----hhhCCCCCCCEEEccCCccccc----cCCCCCCCCCCCEEEcccCcC
Q 041300          279 ----ESLRNCTSLIRVRLNGNNLTGNIS-----EALGLYPNLTFIDLSRNNFYGE----ISSNWGKCPKLGTLNVSMNNI  345 (716)
Q Consensus       279 ----~~l~~l~~L~~L~l~~n~l~~~~~-----~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l  345 (716)
                          ..+..-..|+.+.+..|.|...-.     ..+..+.+|+.|||..|.++-.    ....+...+.|+.|.+..|-+
T Consensus       175 ~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCll  254 (388)
T COG5238         175 ELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLL  254 (388)
T ss_pred             HHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhh
Confidence                122233578888888887763211     1123456778888887777632    222334445567777776666


Q ss_pred             cccCcccc------cCCCCCCEEEccCCccc
Q 041300          346 TGGIPREI------GNMSQLQALDLSLNHIV  370 (716)
Q Consensus       346 ~~~~~~~~------~~l~~L~~L~L~~n~l~  370 (716)
                      +..-...+      ...++|+.|-+.+|.+.
T Consensus       255 s~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~  285 (388)
T COG5238         255 SNEGVKSVLRRFNEKFVPNLMPLPGDYNERR  285 (388)
T ss_pred             ccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence            53322211      12355566666655554

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=97.99  E-value=5.8e-06  Score=86.15  Aligned_cols=89  Identities=21%  Similarity=0.376  Sum_probs=73.1

Q ss_pred             cCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ..|...+.||+||-.+||++...+.+.+|+|++..... +. +....|.+||+.|.++ .|.+||++++|-..++..|||
T Consensus       361 ~~Yeilk~iG~GGSSkV~kV~~s~~~iyalkkv~~~~~-D~-qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv~d~~lYmv  438 (677)
T KOG0596|consen  361 REYEILKQIGSGGSSKVFKVLNSDKQIYALKKVVLLEA-DN-QTLDGYRNEIALLNKLKGHDKIIQLYDYEVTDGYLYMV  438 (677)
T ss_pred             chhhHHHhhcCCCcceeeeeecCCCcchhhhHHHHhhc-CH-HHHHHHHHHHHHHHHhcCCceEEEEeeeeccCceEEEE
Confidence            45778889999999999999887888889887754322 22 2556799999999999 499999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      |||=+- +|.++|
T Consensus       439 mE~Gd~-DL~kiL  450 (677)
T KOG0596|consen  439 MECGDI-DLNKIL  450 (677)
T ss_pred             eecccc-cHHHHH
Confidence            996543 777766

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=97.94  E-value=5.8e-06  Score=90.27  Aligned_cols=82  Identities=27%  Similarity=0.416  Sum_probs=67.0

Q ss_pred             CCcccccccCCCceE-EEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeCCeeeEE
Q 041300          625 DFDAEYCIGNGGHGS-VYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~-v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~~~~~lv  702 (716)
                      -|...+++|.|+-|+ ||+|.+ .|+.||||++-..       ...--.+||..++.- .||||||+++.-.++...||.
T Consensus       510 ~~~~~eilG~Gs~Gt~Vf~G~y-e~R~VAVKrll~e-------~~~~A~rEi~lL~eSD~H~NviRyyc~E~d~qF~YIa  581 (903)
T KOG1027|consen  510 FFSPKEILGYGSNGTVVFRGVY-EGREVAVKRLLEE-------FFDFAQREIQLLQESDEHPNVIRYYCSEQDRQFLYIA  581 (903)
T ss_pred             eeccHHHcccCCCCcEEEEEee-CCceehHHHHhhH-------hHHHHHHHHHHHHhccCCCceEEEEeeccCCceEEEE
Confidence            356677899998875 799998 6789999998542       223457999999888 699999998888888889999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      .|.|.. +|.|++
T Consensus       582 lELC~~-sL~dli  593 (903)
T KOG1027|consen  582 LELCAC-SLQDLI  593 (903)
T ss_pred             ehHhhh-hHHHHH
Confidence            999976 888876

>smart00090 RIO RIO-like kinase

Probab=97.86  E-value=2.9e-05  Score=76.42  Aligned_cols=88  Identities=22%  Similarity=0.158  Sum_probs=59.9

Q ss_pred             CCcccccccCCCceEEEEEE--cCCCCEEEEEEccccCCcc-------------------ch-hhHHHHHHHHHHHhcCC
Q 041300          625 DFDAEYCIGNGGHGSVYRAE--LPSGEVVAVKKFHSSIPCD-------------------QI-ADQKEFLTEVQALTEIR  682 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~--~~~~~~vavK~l~~~~~~~-------------------~~-~~~~~~~~ei~~l~~l~  682 (716)
                      .|...+.||+|+||.||+|.  ..+|+.||||++.......                   .. .....+.+|++.+.++.
T Consensus        29 ~~~i~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~L~~L~  108 (237)
T smart00090       29 LSAIGGCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFRNLQRLY  108 (237)
T ss_pred             hHHhCCeeccCcceeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            46677889999999999997  5689999999987532110                   00 01123678999999997


Q ss_pred             CCCccccceEEEeCCeeeEEEcccCCCCHHhH
Q 041300          683 HRNIVKFYGFCSHAQHSFLVYEFLERGSLAAI  714 (716)
Q Consensus       683 H~niv~l~g~~~~~~~~~lv~Ey~~~GsL~~~  714 (716)
                      |..+ .....+.. ...++||||+++++|..+
T Consensus       109 ~~~i-~~p~~~~~-~~~~lV~E~~~g~~L~~~  138 (237)
T smart00090      109 EAGV-PVPKPIAW-RRNVLVMEFIGGDGLPAP  138 (237)
T ss_pred             hcCC-CCCeeeEe-cCceEEEEEecCCccccc
Confidence            6432 22222222 345899999999887543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.84  E-value=1.4e-05  Score=55.01  Aligned_cols=36  Identities=28%  Similarity=0.528  Sum_probs=14.1

Q ss_pred             CCCEEECcCCcCcccCCccccCCCCCCEEEcccccCc
Q 041300          101 KLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELD  137 (716)
Q Consensus       101 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  137 (716)
                      +|++|++++|+|+ .+|..+++|++|++|++++|.++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3444444444444 22333444444444444444443

...

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=97.82  E-value=1.7e-05  Score=79.27  Aligned_cols=96  Identities=22%  Similarity=0.327  Sum_probs=72.4

Q ss_pred             HHHHhhcCCcccccccCCCceEEEEEEcCCC------CEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccce
Q 041300          618 EIVRETNDFDAEYCIGNGGHGSVYRAELPSG------EVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG  691 (716)
Q Consensus       618 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~------~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g  691 (716)
                      ++......+....++-+|.||.||+|.|.+.      +.|-||.++...  .+. ....|..|.-.+..+.|||+..+.|
T Consensus       278 ~l~v~r~Rv~l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~A--S~i-Qv~~~L~es~lly~~sH~nll~V~~  354 (563)
T KOG1024|consen  278 ELTVQRCRVRLSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQHA--SQI-QVNLLLQESMLLYGASHPNLLSVLG  354 (563)
T ss_pred             hhhhhhhheechhhhhcCchhheeeeeecccCCcchHHHHHHHHHHhcc--cHH-HHHHHHHHHHHHhcCcCCCccceeE
Confidence            3334445577788899999999999976543      345567665421  111 2356889999999999999999999


Q ss_pred             EEEeC-CeeeEEEcccCCCCHHhHhC
Q 041300          692 FCSHA-QHSFLVYEFLERGSLAAILS  716 (716)
Q Consensus       692 ~~~~~-~~~~lv~Ey~~~GsL~~~l~  716 (716)
                      ++.+. +.++.+|.|+.-|+|..||+
T Consensus       355 V~ie~~~~P~V~y~~~~~gNLK~FL~  380 (563)
T KOG1024|consen  355 VSIEDYATPFVLYPATGVGNLKSFLQ  380 (563)
T ss_pred             EEeeccCcceEEEeccCcchHHHHHH
Confidence            99764 56899999999999999873

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.80  E-value=4.8e-07  Score=84.63  Aligned_cols=90  Identities=28%  Similarity=0.466  Sum_probs=65.6

Q ss_pred             hcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC-----
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA-----  696 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~-----  696 (716)
                      ...|....+||+|.||.||+++.. .|+.||+|+.--.. .... -...-.+|++++..++|+|++.+++.|...     
T Consensus        16 ~~~yek~~kigqGtfgeVFkAr~~n~~kkvalkkvlmen-eKeG-fpitalreikiL~~lkHenv~nliEic~tk~Tp~~   93 (376)
T KOG0669|consen   16 VSKYEKLAKIGQGTFGEVFKARSKNTGKKVALKKVLMEN-EKEG-FPITALREIKILQLLKHENVVNLIEICRTKATPTN   93 (376)
T ss_pred             chHHHHHHhcCCchHHHHHHHhhcCccchhHHHHHHHhc-cccC-CcHHHHHHHHHHHHhcchhHHHHHHHHhhccCCcc
Confidence            345666778999999999999754 47788987653210 0111 122357899999999999999999999652     


Q ss_pred             ---CeeeEEEcccCCCCHHhHh
Q 041300          697 ---QHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       697 ---~~~~lv~Ey~~~GsL~~~l  715 (716)
                         ...|+|++||+. +|+-.|
T Consensus        94 r~r~t~ylVf~~ceh-DLaGlL  114 (376)
T KOG0669|consen   94 RDRATFYLVFDFCEH-DLAGLL  114 (376)
T ss_pred             cccceeeeeHHHhhh-hHHHHh
Confidence               247999999987 666544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.78  E-value=4.2e-07  Score=87.16  Aligned_cols=160  Identities=24%  Similarity=0.254  Sum_probs=83.5

Q ss_pred             ccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCc-cccc-cCCCCCCCCCCCEEEcccCcCcccCcccccCCC
Q 041300          280 SLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNN-FYGE-ISSNWGKCPKLGTLNVSMNNITGGIPREIGNMS  357 (716)
Q Consensus       280 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~-l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  357 (716)
                      .++.|+.|+.|.+.++++...+...++.-.+|+.|+|+.+. ++.. ...-+.+|+.|..|+|+.+.++.......-   
T Consensus       205 iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V---  281 (419)
T KOG2120|consen  205 ILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAV---  281 (419)
T ss_pred             HHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHH---
Confidence            35567788888888888887777777777788888887653 2211 111234556666666666655432211100   


Q ss_pred             CCCEEEccCCccccccCcccCCCCCCcEEEccCCccc---ccCCcccCCCCCCCEEEccCCc-CCccCchhhcCcCCCCE
Q 041300          358 QLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLT---GRLPTEIGSLIELEYLDFSANK-FNNSVPESLGNLLKLHY  433 (716)
Q Consensus       358 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~---~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~  433 (716)
                                       ..+  -++|+.|+|++++-.   .-+..-...+++|.+||||.|. ++......|.+++.|++
T Consensus       282 -----------------~hi--se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~  342 (419)
T KOG2120|consen  282 -----------------AHI--SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQH  342 (419)
T ss_pred             -----------------hhh--chhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhee
Confidence                             000  123444444443211   0011112345566666666543 33333344556666677


Q ss_pred             EECcCCcCcccCChh---hhCCCCCCEEECCCC
Q 041300          434 LGLSNNQFVLELPKE---LEKLVQLSELDASHN  463 (716)
Q Consensus       434 L~Ls~N~l~~~~~~~---~~~l~~L~~L~ls~N  463 (716)
                      |.++.|..  .+|..   +...+.|.+||+-++
T Consensus       343 lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  343 LSLSRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             eehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            66666653  34443   344566777776554

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=97.77  E-value=5.4e-06  Score=79.84  Aligned_cols=84  Identities=24%  Similarity=0.295  Sum_probs=64.9

Q ss_pred             hcCCccc-ccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEe----
Q 041300          623 TNDFDAE-YCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSH----  695 (716)
Q Consensus       623 ~~~~~~~-~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~----  695 (716)
                      +++|... .+||-|--|+|..+. ..+++.+|.|++...         ..-++|++..-.. .|||||+++++|..    
T Consensus        60 tedY~is~qvLG~GinGkV~~C~~k~T~ekfALKvL~Ds---------~KARrEVeLHw~~s~h~~iV~IidVyeNs~~~  130 (400)
T KOG0604|consen   60 TEDYSISWQVLGAGINGKVVQCVHKRTQEKFALKVLLDS---------PKARREVELHWMASGHPHIVSIIDVYENSYQG  130 (400)
T ss_pred             hhhheehhhhhccccCCceEEEEeccchhhhHHHHHhcC---------HHHHhHhhhhhhhcCCCceEEeehhhhhhccC
Confidence            3445433 589999999999984 446889999998642         3457888886555 79999999999854    


Q ss_pred             CCeeeEEEcccCCCCHHhHh
Q 041300          696 AQHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       696 ~~~~~lv~Ey~~~GsL~~~l  715 (716)
                      .....+|||+|+||+|+..+
T Consensus       131 rkcLLiVmE~meGGeLfsri  150 (400)
T KOG0604|consen  131 RKCLLIVMECMEGGELFSRI  150 (400)
T ss_pred             ceeeEeeeecccchHHHHHH
Confidence            34568999999999998765

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.73  E-value=7.9e-07  Score=85.34  Aligned_cols=85  Identities=24%  Similarity=0.240  Sum_probs=46.6

Q ss_pred             CCCEEEccCCccccc-cCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCc-ccccc-CcccCCCCCCcEE
Q 041300          310 NLTFIDLSRNNFYGE-ISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNH-IVGEI-PKELGKLNSLTKL  386 (716)
Q Consensus       310 ~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L  386 (716)
                      .|++||||+..|+.. ....++.|.+|+.|.+.++++...+...++.-.+|+.|+++.+. ++... .-.+.+++.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            466666666655531 22234456666777777777666666666666667777766532 22110 1123455556666


Q ss_pred             EccCCccc
Q 041300          387 ILRGNQLT  394 (716)
Q Consensus       387 ~L~~N~l~  394 (716)
                      +|+.+.++
T Consensus       266 NlsWc~l~  273 (419)
T KOG2120|consen  266 NLSWCFLF  273 (419)
T ss_pred             CchHhhcc
Confidence            66665544

>PRK12274 serine/threonine protein kinase; Provisional

Probab=97.73  E-value=0.0001  Score=69.54  Aligned_cols=84  Identities=7%  Similarity=-0.033  Sum_probs=60.8

Q ss_pred             CcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCC-CCCccccceEEEeCCeeeEEEc
Q 041300          626 FDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR-HRNIVKFYGFCSHAQHSFLVYE  704 (716)
Q Consensus       626 ~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~-H~niv~l~g~~~~~~~~~lv~E  704 (716)
                      +....++++|+||+||.+.- .+..++.+.+.....-.......-|.+|+++|.+++ |+++++++++    +..+++||
T Consensus         4 ~~~~~~l~~~~f~~v~~~~~-~~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~~~~vP~ll~~----~~~~lvme   78 (218)
T PRK12274          4 PAVNEPLKSDTFGRILLVRG-GERKFVRRDLSAAPWWLRGVAWWLARREALALRQLDGLPRTPRLLHW----DGRHLDRS   78 (218)
T ss_pred             cccceeecCCCcceEEEeec-CCceeeecccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEE----cCEEEEEe
Confidence            34567899999999997765 567787777754311001112235889999999995 5789988876    44699999


Q ss_pred             ccCCCCHHhH
Q 041300          705 FLERGSLAAI  714 (716)
Q Consensus       705 y~~~GsL~~~  714 (716)
                      |++|++|.+.
T Consensus        79 yI~G~~L~~~   88 (218)
T PRK12274         79 YLAGAAMYQR   88 (218)
T ss_pred             eecCccHHhh
Confidence            9999998754

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.72  E-value=3.7e-05  Score=52.89  Aligned_cols=36  Identities=44%  Similarity=0.661  Sum_probs=17.0

Q ss_pred             CCCEEECCCCcCccccchhccCCCCCCEEECcCCcCc
Q 041300          454 QLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLS  490 (716)
Q Consensus       454 ~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~  490 (716)
                      +|++|++++|+|+ .+|..+.++++|+.|++++|+|+
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3455555555555 23334455555555555555554

...

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=97.71  E-value=4.3e-05  Score=85.32  Aligned_cols=86  Identities=20%  Similarity=0.293  Sum_probs=56.4

Q ss_pred             hhcCCcccccccCCCceEEEEEEcC-C----CCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceE----
Q 041300          622 ETNDFDAEYCIGNGGHGSVYRAELP-S----GEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGF----  692 (716)
Q Consensus       622 ~~~~~~~~~~ig~g~~g~v~~~~~~-~----~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~----  692 (716)
                      ..++|...++||+|+||.||+|... +    +..||||++....      ..+.+..|  .+.+..+.+++.+...    
T Consensus       130 ~~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~~~------~~e~~~~e--~l~~~~~~~~~~~~~~~~~~  201 (566)
T PLN03225        130 KKDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATEYG------AVEIWMNE--RVRRACPNSCADFVYGFLEP  201 (566)
T ss_pred             ccCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecccc------hhHHHHHH--HHHhhchhhHHHHHHhhhcc
Confidence            4568999999999999999999754 4    6899999876421      11122222  1222222333222221    


Q ss_pred             --EEeCCeeeEEEcccCCCCHHhHh
Q 041300          693 --CSHAQHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       693 --~~~~~~~~lv~Ey~~~GsL~~~l  715 (716)
                        +..+...++||||+++|+|.+++
T Consensus       202 ~~~~~~~~~~LV~ey~~~gsL~~~l  226 (566)
T PLN03225        202 VSSKKEDEYWLVWRYEGESTLADLM  226 (566)
T ss_pred             cccccCCceEEEEEecCCCcHHHHH
Confidence              23456789999999999998876

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.69  E-value=8.2e-05  Score=67.95  Aligned_cols=102  Identities=22%  Similarity=0.279  Sum_probs=56.6

Q ss_pred             ccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccC-CCCCCCCCCCEEEcc
Q 041300          263 LEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEIS-SNWGKCPKLGTLNVS  341 (716)
Q Consensus       263 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~  341 (716)
                      ...+++++|.+...  ..|..++.|.+|.+.+|+|+.+.|..-..+|+|..|.|.+|.|..... ..+..||+|++|.+-
T Consensus        44 ~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll  121 (233)
T KOG1644|consen   44 FDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL  121 (233)
T ss_pred             cceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence            34455555554322  234556667777777777776666655566667777777776653211 234456666666666


Q ss_pred             cCcCcccCc---ccccCCCCCCEEEccC
Q 041300          342 MNNITGGIP---REIGNMSQLQALDLSL  366 (716)
Q Consensus       342 ~n~l~~~~~---~~~~~l~~L~~L~L~~  366 (716)
                      +|.++...-   ..+..+++|++||++.
T Consensus       122 ~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  122 GNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             CCchhcccCceeEEEEecCcceEeehhh
Confidence            666553211   1334555566655544

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=97.68  E-value=5e-05  Score=81.84  Aligned_cols=87  Identities=22%  Similarity=0.219  Sum_probs=56.6

Q ss_pred             cccccCCCceEEEEEEcCCCCEEEEEEccccCCccchh------------------------------------hHHHHH
Q 041300          629 EYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIA------------------------------------DQKEFL  672 (716)
Q Consensus       629 ~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~------------------------------------~~~~~~  672 (716)
                      .+.||+|++|+||+|++.+|+.||||+.++.....-..                                    ..-+|.
T Consensus       122 ~~plasaSigQVh~A~l~~G~~VaVKv~rp~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~Eldf~  201 (437)
T TIGR01982       122 EKPLAAASIAQVHRARLVDGKEVAVKVLRPGIEKTIAADIALLYRLARIVERLSPDSRRLRPTEVVKEFEKTLRRELDLR  201 (437)
T ss_pred             CcceeeeehhheEEEEecCCCEEEEEeeCCCcHHHHHHHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHHHHHHCHH
Confidence            46799999999999999999999999987632110000                                    000255


Q ss_pred             HHHHHHhcC----CCCCccccceEEEe-CCeeeEEEcccCCCCHHhHh
Q 041300          673 TEVQALTEI----RHRNIVKFYGFCSH-AQHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       673 ~ei~~l~~l----~H~niv~l~g~~~~-~~~~~lv~Ey~~~GsL~~~l  715 (716)
                      +|...+.++    +|.+-|.+-.++.+ .+..+|||||++|++|.++.
T Consensus       202 ~Ea~n~~~~~~~~~~~~~v~vP~v~~~~~~~~vLvmE~i~G~~L~~~~  249 (437)
T TIGR01982       202 REAANASELGENFKNDPGVYVPEVYWDRTSERVLTMEWIDGIPLSDIA  249 (437)
T ss_pred             HHHHHHHHHHHhcCCCCCEEeCCEehhhcCCceEEEEeECCcccccHH
Confidence            566555544    23333433334432 34579999999999987753

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=97.67  E-value=2.4e-05  Score=71.49  Aligned_cols=87  Identities=23%  Similarity=0.442  Sum_probs=67.8

Q ss_pred             cCCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHH-hcCCCCCccccceEEEeCCeeeE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQAL-TEIRHRNIVKFYGFCSHAQHSFL  701 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l-~~l~H~niv~l~g~~~~~~~~~l  701 (716)
                      ++......||+|+||.|-+-+ ..+|...|||+++.+...   +..+...+|+.+. +....|.+|+++|.+.+....|+
T Consensus        46 d~L~~i~elGrGayG~vekmrh~~sg~imAvKri~~tvn~---q~q~r~L~dldi~~r~~~CPf~V~FyGa~~regdvwI  122 (282)
T KOG0984|consen   46 DDLVGIEELGRGAYGVVEKMRHIQSGTIMAVKRIRATVNS---QEQKRLLMDLDIIMRTVDCPFTVHFYGALFREGDVWI  122 (282)
T ss_pred             hhhhhhhhhcCCccchhhheeeccCCeEEEEeeehhhcCh---HHHHHHHHhhhhhccCCCCCeEEEeehhhhccccEEE
Confidence            345556679999999988774 457999999999875432   2456788898764 55589999999999999999999


Q ss_pred             EEcccCCCCHHhH
Q 041300          702 VYEFLERGSLAAI  714 (716)
Q Consensus       702 v~Ey~~~GsL~~~  714 (716)
                      .||-|.. ||..+
T Consensus       123 cME~M~t-Sldkf  134 (282)
T KOG0984|consen  123 CMELMDT-SLDKF  134 (282)
T ss_pred             eHHHhhh-hHHHH
Confidence            9999875 55543

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=97.66  E-value=6.8e-05  Score=68.20  Aligned_cols=77  Identities=19%  Similarity=0.135  Sum_probs=63.1

Q ss_pred             cccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCC--CCccccceEEEeCCeeeEEEccc
Q 041300          629 EYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRH--RNIVKFYGFCSHAQHSFLVYEFL  706 (716)
Q Consensus       629 ~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H--~niv~l~g~~~~~~~~~lv~Ey~  706 (716)
                      .+.||+|.++.||++...+ ..++||+......      ...+.+|+.++..++|  ..+++++++...++..+++|||+
T Consensus         3 ~~~i~~g~~~~v~~~~~~~-~~~~iK~~~~~~~------~~~~~~e~~~~~~l~~~~~~~p~~~~~~~~~~~~~~v~e~~   75 (155)
T cd05120           3 IKLLKGGLTNRVYLLGTKD-EDYVLKINPSREK------GADREREVAILQLLARKGLPVPKVLASGESDGWSYLLMEWI   75 (155)
T ss_pred             ceecccccccceEEEEecC-CeEEEEecCCCCc------hhHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCccEEEEEec
Confidence            3568999999999998754 7789999865321      3568899999999977  58889888888778899999999


Q ss_pred             CCCCHH
Q 041300          707 ERGSLA  712 (716)
Q Consensus       707 ~~GsL~  712 (716)
                      +++.+.
T Consensus        76 ~g~~~~   81 (155)
T cd05120          76 EGETLD   81 (155)
T ss_pred             CCeecc
Confidence            998775

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.64  E-value=0.0001  Score=67.34  Aligned_cols=86  Identities=23%  Similarity=0.134  Sum_probs=40.1

Q ss_pred             CcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCcccc-chhccCCCCCCEEECcCCcCcccCC---cCCcCCCC
Q 041300          427 NLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEI-PFQICSLKSLEKLNLSHNNLSGLIP---NCFEGMHG  502 (716)
Q Consensus       427 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~-p~~~~~l~~L~~L~ls~N~l~~~~~---~~~~~~~~  502 (716)
                      .++.|.+|.|.+|+|+.+.|.--..+++|..|.|.+|.|.... -..+..+|.|++|.+-+|..+..--   ..+..+++
T Consensus        62 ~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~  141 (233)
T KOG1644|consen   62 HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPS  141 (233)
T ss_pred             CccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCc
Confidence            3334444444444444333332233334444444444433110 0113345667777777776653211   13456777


Q ss_pred             CCEEEccCCc
Q 041300          503 LSIIDISDNQ  512 (716)
Q Consensus       503 L~~l~ls~N~  512 (716)
                      |++||+++=.
T Consensus       142 l~~LDF~kVt  151 (233)
T KOG1644|consen  142 LRTLDFQKVT  151 (233)
T ss_pred             ceEeehhhhh
Confidence            8888776543

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=97.61  E-value=9.9e-06  Score=76.77  Aligned_cols=88  Identities=18%  Similarity=0.331  Sum_probs=69.0

Q ss_pred             CcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEcc
Q 041300          626 FDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEF  705 (716)
Q Consensus       626 ~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  705 (716)
                      .....++.+...|+.|+|+|+.. .+++|++..+.....  -.++|..|.-.++-+.||||.+++|.|..+....++..|
T Consensus       192 lnl~tkl~e~hsgelwrgrwqgn-divakil~vr~~t~r--isrdfneefp~lrifshpnilpvlgacnsppnlv~isq~  268 (448)
T KOG0195|consen  192 LNLITKLAESHSGELWRGRWQGN-DIVAKILNVREVTAR--ISRDFNEEFPALRIFSHPNILPVLGACNSPPNLVIISQY  268 (448)
T ss_pred             hhhhhhhccCCCcccccccccCc-chhhhhhhhhhcchh--hcchhhhhCcceeeecCCchhhhhhhccCCCCceEeeee
Confidence            33445678888899999999654 456677654322111  235788888888888999999999999999999999999


Q ss_pred             cCCCCHHhHhC
Q 041300          706 LERGSLAAILS  716 (716)
Q Consensus       706 ~~~GsL~~~l~  716 (716)
                      |+.|+|+..||
T Consensus       269 mp~gslynvlh  279 (448)
T KOG0195|consen  269 MPFGSLYNVLH  279 (448)
T ss_pred             ccchHHHHHHh
Confidence            99999998876

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.59  E-value=0.00016  Score=63.92  Aligned_cols=110  Identities=15%  Similarity=0.145  Sum_probs=59.4

Q ss_pred             cCCCCCCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcccccCccCCCccccC
Q 041300           67 LRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQ  146 (716)
Q Consensus        67 ~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  146 (716)
                      +++..|...++|+.+.+.. .+..+...+|.++++|+.+.+..+ +......+|..+..|+.+.+.. .+.......|..
T Consensus         3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~   79 (129)
T PF13306_consen    3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN   79 (129)
T ss_dssp             E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred             ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence            4456677777777777764 455566667777777777777664 5545555677776777777765 444344556667


Q ss_pred             CCCCceeecccccccCCCCccccCCcCCcEEEeec
Q 041300          147 LSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINN  181 (716)
Q Consensus       147 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~  181 (716)
                      +++|+.+++..+ +..+....|.+. +|+.+.+..
T Consensus        80 ~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   80 CTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             -TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             cccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            777777777665 555556667666 777776654

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=97.59  E-value=9.7e-05  Score=80.68  Aligned_cols=90  Identities=17%  Similarity=0.203  Sum_probs=58.4

Q ss_pred             cCCcccccccCCCceEEEEEEcCC-CCEEEEEEccccCCcc--------------------------ch----hhHH---
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELPS-GEVVAVKKFHSSIPCD--------------------------QI----ADQK---  669 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~~-~~~vavK~l~~~~~~~--------------------------~~----~~~~---  669 (716)
                      ..|+. +.+|+|++|+||+|++++ |+.||||++++.....                          ..    .-.+   
T Consensus       120 ~~fd~-~PlasaSiaQVh~A~l~~~G~~VAVKV~rP~i~~~I~~Dl~~l~~~a~~l~~~~~~~~~l~~~~~v~e~~~~l~  198 (537)
T PRK04750        120 DDFDI-KPLASASIAQVHFARLKDNGREVVVKVLRPDILPVIDADLALMYRLARWVERLLPDGRRLKPREVVAEFEKTLH  198 (537)
T ss_pred             HhcCh-hhhcCCCccEEEEEEECCCCCEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHH
Confidence            34666 689999999999999877 9999999997642100                          00    0011   


Q ss_pred             ---HHHHHHHHHhcC----CCCCccccceEEEe-CCeeeEEEcccCCCCHHhH
Q 041300          670 ---EFLTEVQALTEI----RHRNIVKFYGFCSH-AQHSFLVYEFLERGSLAAI  714 (716)
Q Consensus       670 ---~~~~ei~~l~~l----~H~niv~l~g~~~~-~~~~~lv~Ey~~~GsL~~~  714 (716)
                         +|.+|+.-+.++    .+...|.+-.++.+ ....+||||||+|+.+.++
T Consensus       199 ~ElD~~~Ea~N~~~~~~~f~~~~~v~VP~v~~d~st~~VLvmE~i~G~~l~d~  251 (537)
T PRK04750        199 DELDLMREAANASQLRRNFEDSDMLYVPEVYWDYCSETVMVMERMYGIPVSDV  251 (537)
T ss_pred             HhhCHHHHHHHHHHHHHHccCCCCeecceeecccCCCceEEEeeecCccHHhH
Confidence               245555444444    24444544444433 3457899999999998763

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=97.57  E-value=5.5e-05  Score=76.62  Aligned_cols=91  Identities=23%  Similarity=0.350  Sum_probs=75.0

Q ss_pred             HHHhhcCCcccccccCCCceEEEEEEcC----CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEE
Q 041300          619 IVRETNDFDAEYCIGNGGHGSVYRAELP----SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFC  693 (716)
Q Consensus       619 ~~~~~~~~~~~~~ig~g~~g~v~~~~~~----~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~  693 (716)
                      +......|...++||+|.|+.||++...    ..+.||+|.+..+.      ......+|+++|..+ .|.||+++.++.
T Consensus        31 ~p~~~~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts------~p~ri~~El~~L~~~gG~~ni~~~~~~~  104 (418)
T KOG1167|consen   31 IPFISNAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTS------SPSRILNELEMLYRLGGSDNIIKLNGCF  104 (418)
T ss_pred             hhhhhhhhhhhccccccchhhhhhhhHhhhccccceEeeeeccccc------CchHHHHHHHHHHHhccchhhhcchhhh
Confidence            3444567888999999999999999543    35789999997643      234578999999999 599999999999


Q ss_pred             EeCCeeeEEEcccCCCCHHhHh
Q 041300          694 SHAQHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       694 ~~~~~~~lv~Ey~~~GsL~~~l  715 (716)
                      ...++..+|+||++.-+-.++.
T Consensus       105 rnnd~v~ivlp~~~H~~f~~l~  126 (418)
T KOG1167|consen  105 RNNDQVAIVLPYFEHDRFRDLY  126 (418)
T ss_pred             ccCCeeEEEecccCccCHHHHH
Confidence            9999999999999987776654

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.49  E-value=0.00045  Score=60.99  Aligned_cols=121  Identities=14%  Similarity=0.190  Sum_probs=37.7

Q ss_pred             hCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCc
Q 041300          305 LGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLT  384 (716)
Q Consensus       305 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  384 (716)
                      |...++|+.+.+.. .+.......|..+++|+.+.+..+ +.......|.++++|+.+.+.. .+.......|..+++|+
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~   84 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK   84 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence            33334444444432 233333344444444444444432 3333333444444444444433 22222333344444555


Q ss_pred             EEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCC
Q 041300          385 KLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKL  431 (716)
Q Consensus       385 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  431 (716)
                      .+++..+ +.......|.+. +|+.+.+.. .+.......|.++++|
T Consensus        85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             EEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             ccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            5555443 332333334443 455554443 2222333444444433

>cd05119 RIO RIO kinase family, catalytic domain

Probab=97.48  E-value=0.00025  Score=67.30  Aligned_cols=77  Identities=25%  Similarity=0.270  Sum_probs=49.1

Q ss_pred             cccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHH---------------------HHHHHHHHhcCCCCC--
Q 041300          629 EYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKE---------------------FLTEVQALTEIRHRN--  685 (716)
Q Consensus       629 ~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~---------------------~~~ei~~l~~l~H~n--  685 (716)
                      .+.||+|+||+||+|...+++.||||++......... ....                     ...|.+.+.++++..  
T Consensus         2 ~~~lg~G~~g~Vy~a~~~~~~~vavKv~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~   80 (187)
T cd05119           2 GGPIGTGKEADVYLALDGDGEPVAVKIYRTGRTSFKK-RKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRLYEAGVP   80 (187)
T ss_pred             CcccccccceeEEEEECCCCCEEEEEEEecCccchhh-hhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHHHHHcCCC
Confidence            3579999999999998778999999998753211110 1111                     135566666665443  


Q ss_pred             ccccceEEEeCCeeeEEEcccCCCC
Q 041300          686 IVKFYGFCSHAQHSFLVYEFLERGS  710 (716)
Q Consensus       686 iv~l~g~~~~~~~~~lv~Ey~~~Gs  710 (716)
                      +.+.+++    ...++||||+++|.
T Consensus        81 ~~~~~~~----~~~~lv~e~~~g~~  101 (187)
T cd05119          81 VPKPIDL----NRHVLVMEFIGGDG  101 (187)
T ss_pred             CCceEec----CCCEEEEEEeCCCC
Confidence            2333322    34689999999953

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.41  E-value=0.00044  Score=71.87  Aligned_cols=75  Identities=15%  Similarity=0.131  Sum_probs=43.5

Q ss_pred             CCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCC-ccccccCcccCCCCCCc
Q 041300          306 GLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLN-HIVGEIPKELGKLNSLT  384 (716)
Q Consensus       306 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~  384 (716)
                      ..+.+++.|++++|.++.. |   .-.++|+.|.++++.--..+|..+  .++|+.|++++| .+. .+|      ++|+
T Consensus        49 ~~~~~l~~L~Is~c~L~sL-P---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP------~sLe  115 (426)
T PRK15386         49 EEARASGRLYIKDCDIESL-P---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP------ESVR  115 (426)
T ss_pred             HHhcCCCEEEeCCCCCccc-C---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc------cccc
Confidence            3457788888888877644 3   122357888887644333455433  246777777776 443 333      2356


Q ss_pred             EEEccCCcc
Q 041300          385 KLILRGNQL  393 (716)
Q Consensus       385 ~L~L~~N~l  393 (716)
                      .|+++.+..
T Consensus       116 ~L~L~~n~~  124 (426)
T PRK15386        116 SLEIKGSAT  124 (426)
T ss_pred             eEEeCCCCC
Confidence            666665543

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.40  E-value=0.00046  Score=71.72  Aligned_cols=134  Identities=20%  Similarity=0.228  Sum_probs=71.0

Q ss_pred             cCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccC-cCcccCcccccCCCCCCE
Q 041300          283 NCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMN-NITGGIPREIGNMSQLQA  361 (716)
Q Consensus       283 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~  361 (716)
                      .+.+++.|++++|.++..+    ...++|++|.++++.-...+|..+  .++|++|++++| .+. .+|      .+|+.
T Consensus        50 ~~~~l~~L~Is~c~L~sLP----~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP------~sLe~  116 (426)
T PRK15386         50 EARASGRLYIKDCDIESLP----VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP------ESVRS  116 (426)
T ss_pred             HhcCCCEEEeCCCCCcccC----CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc------cccce
Confidence            4466667777766665442    122357777776643333444333  246777777777 443 333      34666


Q ss_pred             EEccCCcccc--ccCcccCCCCCCcEEEccCCccc-c-cCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECc
Q 041300          362 LDLSLNHIVG--EIPKELGKLNSLTKLILRGNQLT-G-RLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLS  437 (716)
Q Consensus       362 L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~-~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  437 (716)
                      |+++.+....  .+|      ++|+.|.+.+++.. . .+|..  -.++|++|++++|... ..|..+.  .+|+.|+++
T Consensus       117 L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls  185 (426)
T PRK15386        117 LEIKGSATDSIKNVP------NGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLH  185 (426)
T ss_pred             EEeCCCCCcccccCc------chHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEec
Confidence            7776655431  222      24566666443211 0 11110  1146888888877755 3343332  478888887


Q ss_pred             CCc
Q 041300          438 NNQ  440 (716)
Q Consensus       438 ~N~  440 (716)
                      .|.
T Consensus       186 ~n~  188 (426)
T PRK15386        186 IEQ  188 (426)
T ss_pred             ccc
Confidence            763

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=97.37  E-value=2.8e-05  Score=73.84  Aligned_cols=86  Identities=26%  Similarity=0.449  Sum_probs=66.4

Q ss_pred             CcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC-----ee
Q 041300          626 FDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ-----HS  699 (716)
Q Consensus       626 ~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~-----~~  699 (716)
                      ...++.||-|+||.||...- ++|+.||.|++...  ...-...+.+.+|++++...+|.|+...++....+.     +.
T Consensus        55 i~PDRPIGYGAFGVVWsVTDPRdgrrvalkK~pnv--fq~L~s~krvFre~kmLcfFkHdNVLSaLDILQPph~dfFqEi  132 (449)
T KOG0664|consen   55 IQPDRPIGYGAFGVVWSVTDPRSGKRVALKKMPNV--FQNLASCKRVFREIKMLSSFRHDNVLSLLDILQPANPSFFQEL  132 (449)
T ss_pred             CCCCCcccccceeEEEeccCCCCccchhHhhcchH--HHHHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCCchHHHHH
Confidence            45677899999999999864 47999999988642  222235567889999999999999999998886653     56


Q ss_pred             eEEEcccCCCCHHhH
Q 041300          700 FLVYEFLERGSLAAI  714 (716)
Q Consensus       700 ~lv~Ey~~~GsL~~~  714 (716)
                      |+|.|.|.. +|++.
T Consensus       133 YV~TELmQS-DLHKI  146 (449)
T KOG0664|consen  133 YVLTELMQS-DLHKI  146 (449)
T ss_pred             HHHHHHHHh-hhhhe
Confidence            788887754 55543

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=97.37  E-value=0.00012  Score=69.73  Aligned_cols=87  Identities=22%  Similarity=0.342  Sum_probs=67.7

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceE-EEeCCeee
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGF-CSHAQHSF  700 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~-~~~~~~~~  700 (716)
                      +.|...+.+|+|.||++-.++.+ ..+.+++|.+.+.     ....++|.+|-..--.+ .|.||+.-++. +...+.++
T Consensus        24 d~y~I~k~lgeG~FgkIlL~eHr~s~t~ivlKavp~p-----~tt~~dF~rEfhY~~~Ls~H~hIi~tY~vaFqt~d~Yv   98 (378)
T KOG1345|consen   24 DVYTINKQLGEGRFGKILLAEHRQSKTRIVLKAVPRP-----QTTQADFVREFHYSFFLSPHQHIIDTYEVAFQTSDAYV   98 (378)
T ss_pred             hhhhHHHHhcccceeeEEeeeccCCceEEEeeccCcc-----hhhHHHHHHHhccceeeccchhhhHHHHHHhhcCceEE
Confidence            35788889999999999999654 5678899987652     12567899997655555 59999977764 46677888


Q ss_pred             EEEcccCCCCHHhHh
Q 041300          701 LVYEFLERGSLAAIL  715 (716)
Q Consensus       701 lv~Ey~~~GsL~~~l  715 (716)
                      .++||++.|+|..-+
T Consensus        99 F~qE~aP~gdL~snv  113 (378)
T KOG1345|consen   99 FVQEFAPRGDLRSNV  113 (378)
T ss_pred             EeeccCccchhhhhc
Confidence            999999999998643

>PHA02882 putative serine/threonine kinase; Provisional

Probab=97.30  E-value=0.00082  Score=69.00  Aligned_cols=84  Identities=23%  Similarity=0.356  Sum_probs=53.6

Q ss_pred             cCCcccccccCCCceEEEEEEcCC----CCEEEEEEccccCCccchhh--------HHHHHHHHHHHhcCCCCCccccce
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELPS----GEVVAVKKFHSSIPCDQIAD--------QKEFLTEVQALTEIRHRNIVKFYG  691 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~~----~~~vavK~l~~~~~~~~~~~--------~~~~~~ei~~l~~l~H~niv~l~g  691 (716)
                      ..|...++||+|+||+||+|...+    +..+|+|+..... ......        ......+...+..++|++++++++
T Consensus        12 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~   90 (294)
T PHA02882         12 KEWKIDKLIGCGGFGCVYETQCASDHCINNQAVAKIENLEN-ETIVMETLVYNNIYDIDKIALWKNIHNIDHLGIPKYYG   90 (294)
T ss_pred             CceEEeeEEecCCCceEEEEEEcCCcccccceEEEeccccC-CchhhHHHHHHhhhhHHHHHHHHHhccCCCCCCCcEEE
Confidence            468889999999999999997644    3456666543211 110000        011233444567789999999999


Q ss_pred             EEEeCC----eeeEEEcccCC
Q 041300          692 FCSHAQ----HSFLVYEFLER  708 (716)
Q Consensus       692 ~~~~~~----~~~lv~Ey~~~  708 (716)
                      ++....    ..++++|++..
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~  111 (294)
T PHA02882         91 CGSFKRCRMYYRFILLEKLVE  111 (294)
T ss_pred             eeeEecCCceEEEEEEehhcc
Confidence            876543    34778887643

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=97.28  E-value=0.00015  Score=69.25  Aligned_cols=79  Identities=19%  Similarity=0.415  Sum_probs=61.9

Q ss_pred             cccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCC-CCCccccceEEEeCCeeeEEEc
Q 041300          627 DAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR-HRNIVKFYGFCSHAQHSFLVYE  704 (716)
Q Consensus       627 ~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~-H~niv~l~g~~~~~~~~~lv~E  704 (716)
                      .....+|.|+.|.||+++.. .|...|||.+......   ...+.....+.++...+ .|.||+.+||+.....+++.||
T Consensus        95 ~~l~dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt~Nk---ee~kRILmDldvv~~s~dcpyIV~c~GyFi~n~dV~IcMe  171 (391)
T KOG0983|consen   95 ENLGDLGSGTCGQVWKMRFRSTGHIIAVKQMRRTGNK---EENKRILMDLDVVLKSHDCPYIVQCFGYFITNTDVFICME  171 (391)
T ss_pred             hhHHhhcCCCccceEEEEEcccceEEEEEeecccCCH---HHHHHHHHhhhHHhhccCCCeeeeeeeEEeeCchHHHHHH
Confidence            34456899999999999765 5888999999875322   23455677777766654 9999999999999999999999


Q ss_pred             ccCC
Q 041300          705 FLER  708 (716)
Q Consensus       705 y~~~  708 (716)
                      .|..
T Consensus       172 lMs~  175 (391)
T KOG0983|consen  172 LMST  175 (391)
T ss_pred             HHHH
Confidence            8754

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=97.15  E-value=0.0002  Score=76.50  Aligned_cols=85  Identities=25%  Similarity=0.345  Sum_probs=67.9

Q ss_pred             hcCCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeCCeee
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHSF  700 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~~~~~  700 (716)
                      +..|.....+|.|+|+.|-++. .+++...|||++.+..        .+-.+|+.++... +|||+|++.+.+.++.+.|
T Consensus       321 ~~~y~~~~~~~~gs~s~~~~~~~~~t~~~~~vkii~~~~--------~~~~~e~~~~~~~~~h~niv~~~~v~~~~~~~~  392 (612)
T KOG0603|consen  321 TESYEFREELGEGSFSAVKYCESSPTDQEPAVKIISKRA--------DDNQDEIPISLLVRDHPNIVKSHDVYEDGKEIY  392 (612)
T ss_pred             chhhccccccCCCCccceeeeeccccccchhheeccccc--------cccccccchhhhhcCCCcceeecceecCCceee
Confidence            3456667779999999998885 4567788999997642        1234577666655 7999999999999999999


Q ss_pred             EEEcccCCCCHHhHh
Q 041300          701 LVYEFLERGSLAAIL  715 (716)
Q Consensus       701 lv~Ey~~~GsL~~~l  715 (716)
                      +|||++.+|.+.+.+
T Consensus       393 ~v~e~l~g~ell~ri  407 (612)
T KOG0603|consen  393 LVMELLDGGELLRRI  407 (612)
T ss_pred             eeehhccccHHHHHH
Confidence            999999999887754

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=97.15  E-value=0.0016  Score=67.69  Aligned_cols=87  Identities=32%  Similarity=0.577  Sum_probs=70.9

Q ss_pred             CcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCC-CccccceEEEeCCeeeEEEc
Q 041300          626 FDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHR-NIVKFYGFCSHAQHSFLVYE  704 (716)
Q Consensus       626 ~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~-niv~l~g~~~~~~~~~lv~E  704 (716)
                      |.....+|.|+||.||++...  ..+|+|.+........ .....|.+|+.++.++.|+ +++++.+++......++++|
T Consensus         2 ~~~~~~l~~g~~~~v~~~~~~--~~~~~k~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   78 (384)
T COG0515           2 YRILRKLGEGSFGEVYLARDR--KLVALKVLAKKLESKS-KEVERFLREIQILASLNHPPNIVKLYDFFQDEGSLYLVME   78 (384)
T ss_pred             ceeEEeecCCCCeEEEEEEec--cEEEEEeechhhccch-hHHHHHHHHHHHHHHccCCcceeeEEEEEecCCEEEEEEe
Confidence            455677999999999999765  7889999976433221 1356799999999999988 79999999977777899999


Q ss_pred             ccCCCCHHhHh
Q 041300          705 FLERGSLAAIL  715 (716)
Q Consensus       705 y~~~GsL~~~l  715 (716)
                      |+.++++.+++
T Consensus        79 ~~~~~~l~~~~   89 (384)
T COG0515          79 YVDGGSLEDLL   89 (384)
T ss_pred             cCCCCcHHHHH
Confidence            99999998654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.13  E-value=0.00011  Score=83.03  Aligned_cols=103  Identities=20%  Similarity=0.308  Sum_probs=60.8

Q ss_pred             CCCCEEECcCCcCcc-cCCcccc-CCCCCCEEEcccccCccC-CCccccCCCCCceeecccccccCCCCccccCCcCCcE
Q 041300          100 TKLSYISLDSNQLSG-KIPAEVG-LLTHLKVLSFQFNELDGS-IPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVR  176 (716)
Q Consensus       100 ~~L~~L~Ls~N~l~~-~~p~~~~-~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  176 (716)
                      .+|++||+++...-. .-|..++ .||.|+.|.+.+=.+... ......++++|..||+++.+++..  ..+++|++|++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            567888887754321 1122233 477888888777655422 122335677788888888777644  56677777777


Q ss_pred             EEeecccccc-cccccccCCCCCceeeCC
Q 041300          177 LYINNNSLSG-SILTNIGNLKFLFELDLS  204 (716)
Q Consensus       177 L~L~~n~l~~-~~~~~l~~l~~L~~L~l~  204 (716)
                      |.+.+=.+.. .....+-+|++|+.||+|
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS  228 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDIS  228 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeecc
Confidence            7777655542 233344455555555554

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=97.11  E-value=6.2e-05  Score=77.76  Aligned_cols=90  Identities=23%  Similarity=0.312  Sum_probs=72.1

Q ss_pred             CcccccccCCCceEEEEEEcCCC-CEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEc
Q 041300          626 FDAEYCIGNGGHGSVYRAELPSG-EVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYE  704 (716)
Q Consensus       626 ~~~~~~ig~g~~g~v~~~~~~~~-~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~E  704 (716)
                      +.....+|-||||.|-....... ..+|.|++++...-+.. ..+....|-.+|..++.|.||++|--+.+..+.|+.||
T Consensus       422 l~~iaTLGvGgFGRVELV~~~~~~~~fAlKilkK~hIVdtk-QqeHv~sEr~Im~~~~s~fIvrLYrTfrd~kyvYmLmE  500 (732)
T KOG0614|consen  422 LKRIATLGVGGFGRVELVKVNSQKATFALKILKKKHIVDTK-QQEHVFSERNIMMECRSDFIVRLYRTFRDSKYVYMLME  500 (732)
T ss_pred             hhhhhhcccCccceEEEEEecccchHHHHHHHhHhhccchh-HHHHHHhHHHHHHhcCchHHHHHHHHhccchhhhhhHH
Confidence            44445689999999998876543 34799999876554443 23446789999999999999999999999999999999


Q ss_pred             ccCCCCHHhHhC
Q 041300          705 FLERGSLAAILS  716 (716)
Q Consensus       705 y~~~GsL~~~l~  716 (716)
                      -|-||+|-..|+
T Consensus       501 aClGGElWTiLr  512 (732)
T KOG0614|consen  501 ACLGGELWTILR  512 (732)
T ss_pred             hhcCchhhhhhh
Confidence            999999877653

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=97.00  E-value=0.00041  Score=79.63  Aligned_cols=89  Identities=27%  Similarity=0.355  Sum_probs=65.3

Q ss_pred             HHhhcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCC---CCCccccceEEEeC
Q 041300          620 VRETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR---HRNIVKFYGFCSHA  696 (716)
Q Consensus       620 ~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~---H~niv~l~g~~~~~  696 (716)
                      +.....|...+.||+|+||+||+|.-.+|+.||+|+-++...       -+|--=.+++.|++   -+.|..+..++.-.
T Consensus       694 ~~~~~~~~I~~e~G~g~y~~vy~a~~~~~~~~alK~e~P~~~-------WEfYI~~q~~~RLk~~~~~~~~~~~~a~~~~  766 (974)
T KOG1166|consen  694 EVGGEKFCISKEIGEGSYGSVYVATHSNGKLVALKVEKPPNP-------WEFYICLQVMERLKPQMLPSIMHISSAHVFQ  766 (974)
T ss_pred             eecceeEEEEeeeccccceEEEEeecCCCcEEEEEeecCCCc-------eeeeehHHHHHhhchhhhcchHHHHHHHccC
Confidence            344567888899999999999999877799999998765321       22332234455555   23455555555567


Q ss_pred             CeeeEEEcccCCCCHHhHh
Q 041300          697 QHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       697 ~~~~lv~Ey~~~GsL~~~l  715 (716)
                      +..++|+||.+.|+|.|++
T Consensus       767 ~~S~lv~ey~~~Gtlld~~  785 (974)
T KOG1166|consen  767 NASVLVSEYSPYGTLLDLI  785 (974)
T ss_pred             CcceeeeeccccccHHHhh
Confidence            7889999999999999886

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.93  E-value=0.00031  Score=79.33  Aligned_cols=112  Identities=23%  Similarity=0.262  Sum_probs=59.0

Q ss_pred             CCCCCCEEEccCCccccc-cCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCcccc-ccCcccCCCCCCc
Q 041300          307 LYPNLTFIDLSRNNFYGE-ISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVG-EIPKELGKLNSLT  384 (716)
Q Consensus       307 ~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~  384 (716)
                      .+|.|+.|.+++-.+... ....+.++|+|..||+|+.+++..  ..++.+++|++|.+.+=.+.. ..-..+..|++|+
T Consensus       146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~  223 (699)
T KOG3665|consen  146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR  223 (699)
T ss_pred             hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence            356666666665444321 122334556666666666666533  455666666666665544432 1112344566666


Q ss_pred             EEEccCCcccccC------CcccCCCCCCCEEEccCCcCCcc
Q 041300          385 KLILRGNQLTGRL------PTEIGSLIELEYLDFSANKFNNS  420 (716)
Q Consensus       385 ~L~L~~N~l~~~~------~~~~~~l~~L~~L~Ls~N~l~~~  420 (716)
                      .||+|..+.....      -+.-..+|+|+.||.|++.+++.
T Consensus       224 vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~  265 (699)
T KOG3665|consen  224 VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE  265 (699)
T ss_pred             eeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence            6666665443111      01123467777777777766543

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=96.91  E-value=0.0021  Score=60.52  Aligned_cols=85  Identities=24%  Similarity=0.354  Sum_probs=65.1

Q ss_pred             cCCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCC-CCCccccceEEEeCCeeeE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR-HRNIVKFYGFCSHAQHSFL  701 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~-H~niv~l~g~~~~~~~~~l  701 (716)
                      .+|...+.||+|+||.+|.|. +.+|..||||.=....      ..-+...|..+-.-++ ...|..++-|..+...-.+
T Consensus        15 gky~lvrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~a------~hpqL~yEskvY~iL~~g~GiP~i~~y~~e~~ynvl   88 (341)
T KOG1163|consen   15 GKYKLVRKIGSGSFGDIYLGISITSGEEVAIKLESSKA------KHPQLLYESKVYRILQGGVGIPHIRHYGTEKDYNVL   88 (341)
T ss_pred             cceEEEEeecCCchhheeeeeeccCCceEEEEeecccC------CCcchhHHHHHHHHhccCCCCchhhhhcccccccee
Confidence            578889999999999999994 6689999999854421      1234667777777775 4577777778888888899


Q ss_pred             EEcccCCCCHHhHh
Q 041300          702 VYEFLERGSLAAIL  715 (716)
Q Consensus       702 v~Ey~~~GsL~~~l  715 (716)
                      |||.. |-+|++..
T Consensus        89 VMdLL-GPsLEdLf  101 (341)
T KOG1163|consen   89 VMDLL-GPSLEDLF  101 (341)
T ss_pred             eeecc-CccHHHHH
Confidence            99965 66887754

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.89  E-value=0.0006  Score=65.23  Aligned_cols=64  Identities=25%  Similarity=0.336  Sum_probs=31.9

Q ss_pred             ccCCCCCCEEEccCC--ccccccCcccCCCCCCcEEEccCCcccccCCcc---cCCCCCCCEEEccCCcCC
Q 041300          353 IGNMSQLQALDLSLN--HIVGEIPKELGKLNSLTKLILRGNQLTGRLPTE---IGSLIELEYLDFSANKFN  418 (716)
Q Consensus       353 ~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~---~~~l~~L~~L~Ls~N~l~  418 (716)
                      |-.|++|+.|.++.|  ++++..+.....+++|++|++++|++..  +..   +..+.+|..|++.+|..+
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVT  129 (260)
T ss_pred             CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCcc
Confidence            334555666666666  4444444344444666666666666542  122   233444555555555443

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=96.84  E-value=0.0031  Score=62.19  Aligned_cols=86  Identities=15%  Similarity=0.225  Sum_probs=59.8

Q ss_pred             ccccc-CCCceEEEEEEcCCCCEEEEEEccccCC-----cc----chhhHHHHHHHHHHHhcCCCCCc--cccceEEEeC
Q 041300          629 EYCIG-NGGHGSVYRAELPSGEVVAVKKFHSSIP-----CD----QIADQKEFLTEVQALTEIRHRNI--VKFYGFCSHA  696 (716)
Q Consensus       629 ~~~ig-~g~~g~v~~~~~~~~~~vavK~l~~~~~-----~~----~~~~~~~~~~ei~~l~~l~H~ni--v~l~g~~~~~  696 (716)
                      ..++| .||.|+||..... +..++||++.....     ..    .......+.+|++++.+++|+++  ++.+++....
T Consensus        36 ~~~lg~~~g~gtv~~v~~~-~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L~~~gi~vP~pl~~~~~~  114 (239)
T PRK01723         36 ARVVGSAKGRGTTWFVQTP-GVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLYEAGLPVPRPIAARVVR  114 (239)
T ss_pred             CceeecCCCCccEEEEEeC-CceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHHHhCCCCCceeEeeeeee
Confidence            45687 8999999999874 67789998854211     00    01123467899999999998885  6677765432


Q ss_pred             C-e---eeEEEcccCC-CCHHhHh
Q 041300          697 Q-H---SFLVYEFLER-GSLAAIL  715 (716)
Q Consensus       697 ~-~---~~lv~Ey~~~-GsL~~~l  715 (716)
                      . .   .++||||+++ ++|.+++
T Consensus       115 ~~~~~~~~lV~e~l~G~~~L~~~l  138 (239)
T PRK01723        115 HGLFYRADILIERIEGARDLVALL  138 (239)
T ss_pred             cCcceeeeEEEEecCCCCCHHHHH
Confidence            2 2   2599999998 6887764

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.68  E-value=0.00099  Score=63.80  Aligned_cols=42  Identities=26%  Similarity=0.433  Sum_probs=17.3

Q ss_pred             CCCCCCCcEEECCCC--CccccCcccccCCCCCCEEECcCCcCc
Q 041300           72 FSSFPQLVHLDLSLN--GFFGTIPSQIGNLTKLSYISLDSNQLS  113 (716)
Q Consensus        72 f~~l~~L~~L~Ls~n--~i~~~~~~~~~~l~~L~~L~Ls~N~l~  113 (716)
                      |-.+++|+.|++|.|  ++.+-++.....+++|++|+|++|+|+
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            334444444444444  333222222233344444444444443

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=96.60  E-value=0.0029  Score=61.75  Aligned_cols=82  Identities=13%  Similarity=0.213  Sum_probs=60.4

Q ss_pred             ccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCC--CccccceEEEeC---CeeeEEEc
Q 041300          630 YCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHR--NIVKFYGFCSHA---QHSFLVYE  704 (716)
Q Consensus       630 ~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~--niv~l~g~~~~~---~~~~lv~E  704 (716)
                      +.++.|..+.||++...+|..+++|........   .....+.+|++++..+++.  .+.++++++...   +..++|||
T Consensus         4 ~~l~~G~~n~~~~v~~~~g~~~ilK~~~~~~~~---~~~~~~~~E~~~~~~l~~~~~~vp~~~~~~~~~~~~~~~~~v~e   80 (223)
T cd05154           4 RQLSGGQSNLTYLLTAGGGRRLVLRRPPPGALL---PSAHDVAREYRVLRALAGTGVPVPKVLALCEDPSVLGTPFYVME   80 (223)
T ss_pred             eecCCCccceEEEEEecCCcceEEEeCCCcccC---cccccHHHHHHHHHHhhCCCCCCCCEEEECCCCCccCCceEEEE
Confidence            458999999999998766688999987653211   0234688999999998764  456677776543   25689999


Q ss_pred             ccCCCCHHhH
Q 041300          705 FLERGSLAAI  714 (716)
Q Consensus       705 y~~~GsL~~~  714 (716)
                      |++++++.+.
T Consensus        81 ~i~G~~l~~~   90 (223)
T cd05154          81 RVDGRVLRDR   90 (223)
T ss_pred             EeCCEecCCC
Confidence            9999887653

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=96.32  E-value=0.0052  Score=63.81  Aligned_cols=86  Identities=23%  Similarity=0.385  Sum_probs=64.4

Q ss_pred             cCCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCC-----C---CCccccceEEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR-----H---RNIVKFYGFCS  694 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~-----H---~niv~l~g~~~  694 (716)
                      ..|...+++|=|.|.+||.+. ..+.+.||+|+.+.+..     -.+.-..||+++++++     |   ..||+|++++.
T Consensus        78 gRY~v~rKLGWGHFSTVWLawDtq~~r~VAlKVvKSAqh-----YtEaAlDEIklL~~v~~~Dp~~~~~~~VV~LlD~Fk  152 (590)
T KOG1290|consen   78 GRYHVQRKLGWGHFSTVWLAWDTQNKRYVALKVVKSAQH-----YTEAALDEIKLLQQVREGDPNDPGKKCVVQLLDHFK  152 (590)
T ss_pred             ceEEEEEeccccccceeEEEeeccCCeEEEEEEEehhhH-----HHHHHHHHHHHHHHHHhcCCCCCCCceeeeeeccce
Confidence            467788899999999999994 55678999999875321     1234578999998874     2   37999999996


Q ss_pred             eC----CeeeEEEcccCCCCHHhHh
Q 041300          695 HA----QHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       695 ~~----~~~~lv~Ey~~~GsL~~~l  715 (716)
                      ..    ..+.||+||+- -+|..+|
T Consensus       153 hsGpNG~HVCMVfEvLG-dnLLklI  176 (590)
T KOG1290|consen  153 HSGPNGQHVCMVFEVLG-DNLLKLI  176 (590)
T ss_pred             ecCCCCcEEEEEehhhh-hHHHHHH
Confidence            63    36789999873 3666554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.25  E-value=0.00023  Score=68.22  Aligned_cols=98  Identities=23%  Similarity=0.167  Sum_probs=48.0

Q ss_pred             CCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCc-hhhcCcCCCCEEEC
Q 041300          358 QLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVP-ESLGNLLKLHYLGL  436 (716)
Q Consensus       358 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L  436 (716)
                      +.+.|++-++.+.++  .....++.|+.|.|+-|+|+..  ..+..+++|++|+|..|.|.+... ..+.++++|+.|.|
T Consensus        20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            334444444444321  1223445555555555555422  224455555555555555543211 23456666666777


Q ss_pred             cCCcCcccCChh-----hhCCCCCCEEE
Q 041300          437 SNNQFVLELPKE-----LEKLVQLSELD  459 (716)
Q Consensus       437 s~N~l~~~~~~~-----~~~l~~L~~L~  459 (716)
                      ..|...+.-+..     +.-|++|+.||
T Consensus        96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   96 DENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             ccCCcccccchhHHHHHHHHcccchhcc
Confidence            666666554432     33455666554

>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]

Probab=96.15  E-value=0.012  Score=53.47  Aligned_cols=77  Identities=19%  Similarity=0.286  Sum_probs=56.2

Q ss_pred             ccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEcccC
Q 041300          628 AEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLE  707 (716)
Q Consensus       628 ~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~  707 (716)
                      ....|++|.+|.||.|.|. |..+|+|+-....      .+..+..|++++..+...++-+=+-.+   +..++.|||..
T Consensus        26 v~~~L~KG~~s~Vyl~~~~-~~~~a~Kvrr~ds------~r~~l~kEakiLeil~g~~~~p~vy~y---g~~~i~me~i~   95 (201)
T COG2112          26 VEKELAKGTTSVVYLGEWR-GGEVALKVRRRDS------PRRNLEKEAKILEILAGEGVTPEVYFY---GEDFIRMEYID   95 (201)
T ss_pred             hhhhhhcccccEEEEeecc-CceEEEEEecCCc------chhhHHHHHHHHHHhhhcCCCceEEEe---chhhhhhhhhc
Confidence            4567999999999999984 5689999865421      346689999999999877766422222   33456699999


Q ss_pred             CCCHHhH
Q 041300          708 RGSLAAI  714 (716)
Q Consensus       708 ~GsL~~~  714 (716)
                      |-.|.++
T Consensus        96 G~~L~~~  102 (201)
T COG2112          96 GRPLGKL  102 (201)
T ss_pred             Ccchhhh
Confidence            9777654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.13  E-value=0.00015  Score=69.38  Aligned_cols=80  Identities=23%  Similarity=0.248  Sum_probs=39.9

Q ss_pred             CCEEEEEcCCCCCccccCCCCCCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCC-ccccCCCCCCEE
Q 041300           51 GRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIP-AEVGLLTHLKVL  129 (716)
Q Consensus        51 ~~v~~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L  129 (716)
                      ..|..|++.+++|. +|  .....++.|++|.||-|+|+..-|  |..+++|+.|+|..|.|..... ..+.++++|++|
T Consensus        19 ~~vkKLNcwg~~L~-DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLD-DI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHhhhhcccCCCcc-HH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            34555555555554 11  123456666666666666654333  5556666666666666542210 112344444444


Q ss_pred             Eccccc
Q 041300          130 SFQFNE  135 (716)
Q Consensus       130 ~L~~N~  135 (716)
                      .|..|.
T Consensus        94 WL~ENP   99 (388)
T KOG2123|consen   94 WLDENP   99 (388)
T ss_pred             hhccCC
Confidence            444443

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=96.12  E-value=0.011  Score=61.34  Aligned_cols=85  Identities=22%  Similarity=0.308  Sum_probs=61.5

Q ss_pred             CCcccccccCCCceEEEEEEcCC--CCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCC----CCccccceEE-EeCC
Q 041300          625 DFDAEYCIGNGGHGSVYRAELPS--GEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRH----RNIVKFYGFC-SHAQ  697 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~~~--~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H----~niv~l~g~~-~~~~  697 (716)
                      .|...+.||+|+||.||.+.-..  ...+|+|.-.......    ...+..|+.++..+.+    +++..+++.. ..+.
T Consensus        19 ~~~i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~----~~~l~~E~~vl~~l~~~~~~~~~~~~~~~G~~~~~   94 (322)
T KOG1164|consen   19 RYKLGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSK----PSVLKIEIQVLKKLEKKNGPSHFPKLLDHGRSTED   94 (322)
T ss_pred             ceEEeeeccccCCceEEEEEecCCCCeeEEEEEEEecccCC----CccchhHHHHHHHHhhhcCCCCCCEEEEeccCCCc
Confidence            68899999999999999996433  2468888765432111    1157778888888763    5788888887 4667


Q ss_pred             eeeEEEcccCCCCHHhH
Q 041300          698 HSFLVYEFLERGSLAAI  714 (716)
Q Consensus       698 ~~~lv~Ey~~~GsL~~~  714 (716)
                      ..|+||+. -|-+|.+.
T Consensus        95 ~~~iVM~l-~G~sL~dl  110 (322)
T KOG1164|consen   95 FNFIVMSL-LGPSLEDL  110 (322)
T ss_pred             eeEEEEec-cCccHHHH
Confidence            88999984 46678765

>cd05151 ChoK Choline Kinase (ChoK)

Probab=96.10  E-value=0.011  Score=54.97  Aligned_cols=77  Identities=16%  Similarity=0.106  Sum_probs=53.8

Q ss_pred             ccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEcccCCC
Q 041300          630 YCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERG  709 (716)
Q Consensus       630 ~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~G  709 (716)
                      +.++.|.++.||+++.. +..|++|.......     ....+.+|++++..+.+.++++-.-+ ...+..++||||+++.
T Consensus         4 ~~l~~G~~~~vy~~~~~-~~~~~lK~~~~~~~-----~~~~~~~E~~~l~~l~~~~~~P~~~~-~~~~~~~lv~e~i~G~   76 (170)
T cd05151           4 SPLKGGMTNKNYRVEVA-NKKYVVRIPGNGTE-----LLINRENEAENSKLAAEAGIGPKLYY-FDPETGVLITEFIEGS   76 (170)
T ss_pred             eecCCcccCceEEEEEC-CeEEEEEeCCCCcc-----cccCHHHHHHHHHHHHHhCCCCceEE-EeCCCCeEEEEecCCC
Confidence            45789999999999864 67899998754211     11346788888888876665543322 2334468999999998


Q ss_pred             CHHh
Q 041300          710 SLAA  713 (716)
Q Consensus       710 sL~~  713 (716)
                      ++.+
T Consensus        77 ~l~~   80 (170)
T cd05151          77 ELLT   80 (170)
T ss_pred             cccc
Confidence            8753

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=95.98  E-value=0.0039  Score=62.78  Aligned_cols=88  Identities=24%  Similarity=0.291  Sum_probs=65.9

Q ss_pred             hcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCC------CccccceEEEe
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHR------NIVKFYGFCSH  695 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~------niv~l~g~~~~  695 (716)
                      +..|.....+|+|.||+|-++.- ..+..||||+++....     -.+.-.-|+++++++.+.      -+|.+.+++.-
T Consensus        88 ~~Ry~i~~~lGeGtFGkV~ec~D~~~~~~vAlKIik~V~k-----YreAa~iEi~vLqki~~~DP~g~~rcv~m~~wFdy  162 (415)
T KOG0671|consen   88 TNRYEIVDLLGEGTFGKVVECWDRETKEHVALKIIKNVDK-----YREAALIEIEVLQKINESDPNGKFRCVQMRDWFDY  162 (415)
T ss_pred             ccceehhhhhcCCcccceEEEeecCCCceehHHHHHHHHH-----HhhHHHHHHHHHHHHHhcCCCCceEEEeeehhhhc
Confidence            56788888999999999999842 3478999999975321     234456789999999422      26777788877


Q ss_pred             CCeeeEEEcccCCCCHHhHhC
Q 041300          696 AQHSFLVYEFLERGSLAAILS  716 (716)
Q Consensus       696 ~~~~~lv~Ey~~~GsL~~~l~  716 (716)
                      .+...+|+|.| |-|++|+|+
T Consensus       163 rghiCivfell-G~S~~dFlk  182 (415)
T KOG0671|consen  163 RGHICIVFELL-GLSTFDFLK  182 (415)
T ss_pred             cCceEEEEecc-ChhHHHHhc
Confidence            88889999966 447888763

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=95.65  E-value=0.015  Score=57.61  Aligned_cols=84  Identities=21%  Similarity=0.292  Sum_probs=58.8

Q ss_pred             cCCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeCCeeeE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHSFL  701 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~~~~~l  701 (716)
                      ..|...++||+|+||..+.|+ +-++++||||.=.. +..     .-+..-|-..-+-+ ..++|...+-+...+-.-.|
T Consensus        28 ~hyrVGkKIGeGsFG~lf~G~Nl~nne~VAIKfEPr-kS~-----APQLrdEYr~YKlL~g~~GIP~vYYFGqeG~~NiL  101 (449)
T KOG1165|consen   28 PHYRVGKKIGEGSFGVLFLGKNLYNNEPVAIKFEPR-KSE-----APQLRDEYRTYKLLGGTEGIPQVYYFGQEGKYNIL  101 (449)
T ss_pred             ccceeccccccCcceeeecccccccCceEEEEeccc-cCC-----cchHHHHHHHHHHHcCCCCCCceeeeccccchhhh
Confidence            368889999999999999994 56789999996443 211     12344444444444 56788877766666666789


Q ss_pred             EEcccCCCCHHhH
Q 041300          702 VYEFLERGSLAAI  714 (716)
Q Consensus       702 v~Ey~~~GsL~~~  714 (716)
                      |+|.+ |-||+|+
T Consensus       102 VidLL-GPSLEDL  113 (449)
T KOG1165|consen  102 VIDLL-GPSLEDL  113 (449)
T ss_pred             hhhhh-CcCHHHH
Confidence            99965 5577775

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=94.90  E-value=0.022  Score=59.74  Aligned_cols=87  Identities=24%  Similarity=0.369  Sum_probs=66.1

Q ss_pred             hcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCC------CCCccccceEEEe
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR------HRNIVKFYGFCSH  695 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~------H~niv~l~g~~~~  695 (716)
                      -..|....-.|+|-|++|.+|.- ..|..||||+|..-..     ..+.=.+|+++|.+++      --+.++++-.|..
T Consensus       431 D~RY~V~~~~GkGvFs~Vvra~D~~r~~~vAiKIIRnNE~-----M~KtGl~EleiLkKL~~AD~Edk~Hclrl~r~F~h  505 (752)
T KOG0670|consen  431 DSRYEVQGYTGKGVFSTVVRARDQARGQEVAIKIIRNNEV-----MHKTGLKELEILKKLNDADPEDKFHCLRLFRHFKH  505 (752)
T ss_pred             cceeEEEeccccceeeeeeeccccCCCCeeEEEEeecchH-----HhhhhhHHHHHHHHhhccCchhhhHHHHHHHHhhh
Confidence            34566666789999999999953 3478999999976322     3344578999999984      3378999999988


Q ss_pred             CCeeeEEEcccCCCCHHhHh
Q 041300          696 AQHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       696 ~~~~~lv~Ey~~~GsL~~~l  715 (716)
                      .+..+||+|-+.. +|.+.|
T Consensus       506 knHLClVFE~Lsl-NLRevL  524 (752)
T KOG0670|consen  506 KNHLCLVFEPLSL-NLREVL  524 (752)
T ss_pred             cceeEEEehhhhc-hHHHHH
Confidence            9999999996654 566654

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.81  E-value=0.0096  Score=33.94  Aligned_cols=11  Identities=36%  Similarity=0.794  Sum_probs=4.1

Q ss_pred             CEEECcCCcCc
Q 041300          103 SYISLDSNQLS  113 (716)
Q Consensus       103 ~~L~Ls~N~l~  113 (716)
                      ++|||++|.|+
T Consensus         3 ~~Ldls~n~l~   13 (22)
T PF00560_consen    3 EYLDLSGNNLT   13 (22)
T ss_dssp             SEEEETSSEES
T ss_pred             cEEECCCCcCE
Confidence            33333333333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=94.77  E-value=0.011  Score=58.39  Aligned_cols=86  Identities=22%  Similarity=0.389  Sum_probs=59.9

Q ss_pred             CcccccccCCCceEEEEE-EcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC------e
Q 041300          626 FDAEYCIGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ------H  698 (716)
Q Consensus       626 ~~~~~~ig~g~~g~v~~~-~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~------~  698 (716)
                      |.....+|.|.- .|..+ ..-.+++||+|++......  ....+.-.+|...|..+.|+|+++++.++....      +
T Consensus        19 y~nL~p~~~g~~-~v~~a~D~v~~~~v~ikk~~~pf~n--~~~akra~rel~l~~~v~~~nii~l~n~ftP~~~l~~~~e   95 (369)
T KOG0665|consen   19 YVNLKPIGSGAQ-IVVAAFDQVLGRPVAIKKLSRPFQN--QTHAKRAYRELKLMKCVNHKNIISLLNVFTPQKTLEEFQE   95 (369)
T ss_pred             eeeecccCCCCc-eEEecchhhccCceehhhhcCcccc--CccchhhhhhhhhhhhhcccceeeeeeccCccccHHHHHh
Confidence            444556677765 34444 2224788999988653222  224456678999999999999999999997653      5


Q ss_pred             eeEEEcccCCCCHHhHh
Q 041300          699 SFLVYEFLERGSLAAIL  715 (716)
Q Consensus       699 ~~lv~Ey~~~GsL~~~l  715 (716)
                      .|+|||||.. +|...+
T Consensus        96 ~y~v~e~m~~-nl~~vi  111 (369)
T KOG0665|consen   96 VYLVMELMDA-NLCQVI  111 (369)
T ss_pred             HHHHHHhhhh-HHHHHH
Confidence            7999999975 665543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=94.67  E-value=0.00078  Score=62.93  Aligned_cols=65  Identities=14%  Similarity=0.098  Sum_probs=33.0

Q ss_pred             cccCCCCCCEEEcccccCccCCCccccCCCCCceeecccccccCCCCccccCCcCCcEEEeeccccc
Q 041300          119 EVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLS  185 (716)
Q Consensus       119 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~  185 (716)
                      .|+-++.|..||++.|.+. ..|.++.++..++.+++..|..+ ..|.+++.+++++.+++..|.+.
T Consensus        60 n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen   60 NFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             chHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence            3444444444444444443 34455555555555555555544 44555555555555555555543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.66  E-value=0.013  Score=33.43  Aligned_cols=22  Identities=50%  Similarity=0.603  Sum_probs=16.7

Q ss_pred             CCcEEECCCCCccccCcccccCC
Q 041300           77 QLVHLDLSLNGFFGTIPSQIGNL   99 (716)
Q Consensus        77 ~L~~L~Ls~n~i~~~~~~~~~~l   99 (716)
                      +|++|||++|+++ .+|..|++|
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT-
T ss_pred             CccEEECCCCcCE-eCChhhcCC
Confidence            4789999999998 566667654

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF03109 ABC1: ABC1 family; InterPro: IPR004147 This entry includes ABC1 from yeast [] and AarF from Escherichia coli []

Probab=94.00  E-value=0.023  Score=49.00  Aligned_cols=31  Identities=32%  Similarity=0.299  Sum_probs=27.8

Q ss_pred             cccccCCCceEEEEEEcCCCCEEEEEEcccc
Q 041300          629 EYCIGNGGHGSVYRAELPSGEVVAVKKFHSS  659 (716)
Q Consensus       629 ~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~  659 (716)
                      ...||+|+.|+||+|++++|+.||||+..+.
T Consensus        16 ~~PlasASiaQVh~a~l~~g~~VaVKV~rP~   46 (119)
T PF03109_consen   16 PEPLASASIAQVHRARLKDGEEVAVKVQRPG   46 (119)
T ss_pred             cchhhheehhhheeeeecccchhhhhhcchH
Confidence            4579999999999999999999999998763

These proteins have a nuclear or mitochondrial subcellular location in eukaryotes. The exact molecular functions of these proteins is not clear, however yeast ABC1 suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex [] and E. coli AarF is required for ubiquinone production []. It has been suggested that members of the ABC1 family are novel chaperonins []. These proteins are unrelated to the ABC transporter proteins.

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.87  E-value=0.0016  Score=60.96  Aligned_cols=88  Identities=18%  Similarity=0.177  Sum_probs=63.8

Q ss_pred             CCCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcccccCccCCCccccCCCCC
Q 041300           71 SFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSI  150 (716)
Q Consensus        71 ~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  150 (716)
                      .+..+.+.+.||++.|++.. +-..|.-++.|..|+++.|.+. ..|..++.+..+..+++..|..+ ..|.++...+++
T Consensus        37 ei~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~  113 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP  113 (326)
T ss_pred             hhhccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence            45566677777777777652 3345667777778888888776 67777777777778887777776 567778888888


Q ss_pred             ceeeccccccc
Q 041300          151 EELFLYSNHLN  161 (716)
Q Consensus       151 ~~L~L~~N~l~  161 (716)
                      +++++-+|.+.
T Consensus       114 k~~e~k~~~~~  124 (326)
T KOG0473|consen  114 KKNEQKKTEFF  124 (326)
T ss_pred             chhhhccCcch
Confidence            88888777654

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.41  E-value=0.0007  Score=73.17  Aligned_cols=184  Identities=29%  Similarity=0.283  Sum_probs=86.9

Q ss_pred             CcEEEccCCcCCCcc----chhhCCCCCCCEEEccCCccccccCC----CCCCC-CCCCEEEcccCcCccc----Ccccc
Q 041300          287 LIRVRLNGNNLTGNI----SEALGLYPNLTFIDLSRNNFYGEISS----NWGKC-PKLGTLNVSMNNITGG----IPREI  353 (716)
Q Consensus       287 L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~Ls~n~l~~~~~~----~~~~l-~~L~~L~L~~n~l~~~----~~~~~  353 (716)
                      +..+.|.+|.+....    ...+...+.|..|+++.|.+.+....    .+... ..+++|++..|.++..    +...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            555566666655432    23345566777777777777632111    11111 3455566666666533    23334


Q ss_pred             cCCCCCCEEEccCCccccc----cCcccC----CCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhh
Q 041300          354 GNMSQLQALDLSLNHIVGE----IPKELG----KLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESL  425 (716)
Q Consensus       354 ~~l~~L~~L~L~~n~l~~~----~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  425 (716)
                      .....++.++++.|.+...    ++..+.    ...++++|.+++|.++...-.                    .....+
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~--------------------~l~~~l  228 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCA--------------------LLDEVL  228 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHH--------------------HHHHHH
Confidence            4456666677776666311    111111    233444444444444310000                    000112


Q ss_pred             cCcCC-CCEEECcCCcCccc----CChhhhCC-CCCCEEECCCCcCcccc----chhccCCCCCCEEECcCCcCc
Q 041300          426 GNLLK-LHYLGLSNNQFVLE----LPKELEKL-VQLSELDASHNLFGGEI----PFQICSLKSLEKLNLSHNNLS  490 (716)
Q Consensus       426 ~~l~~-L~~L~Ls~N~l~~~----~~~~~~~l-~~L~~L~ls~N~l~~~~----p~~~~~l~~L~~L~ls~N~l~  490 (716)
                      ...+. +..|++.+|.+...    ....+..+ ..+++++++.|.|+..-    ...+..++.++.+.+++|.+.
T Consensus       229 ~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  229 ASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             hccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            22222 34455555554321    11223333 45566666666665432    233445567777777777765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	716
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-39
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-39
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-15
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-11
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-10
3uim_A	326	Structural Basis For The Impact Of Phosphorylation		1e-08
3tl8_A	349	The Avrptob-Bak1 Complex Reveals Two Structurally S		1e-08
3p86_A	309	Crystal Structure Of Ctr1 Kinase Domain Mutant D676		1e-07
3ppz_A	309	Crystal Structure Of Ctr1 Kinase Domain In Complex		1e-07
3pyy_A	298	Discovery And Characterization Of A Cell-Permeable,		2e-06
3v5q_A	297	Discovery Of A Selective Trk Inhibitor With Efficac		5e-06
1opk_A	495	Structural Basis For The Auto-Inhibition Of C-Abl T		1e-05
2fo0_A	495	Organization Of The Sh3-Sh2 Unit In Active And Inac		1e-05
2gqg_A	278	X-Ray Crystal Structure Of Dasatinib (Bms-354825) B		1e-05
1opl_A	537	Structural Basis For The Auto-Inhibition Of C-Abl T		1e-05
2f4j_A	287	Structure Of The Kinase Domain Of An Imatinib-Resis		1e-05
2v7a_A	286	Crystal Structure Of The T315i Abl Mutant In Comple		1e-05
3qrj_A	277	The Crystal Structure Of Human Abl1 Kinase Domain T		1e-05
4gs6_A	315	Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxoz		1e-05
2hzi_A	277	Abl Kinase Domain In Complex With Pd180970 Length =		1e-05
3qri_A	277	The Crystal Structure Of Human Abl1 Kinase Domain I		1e-05
2g2f_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		1e-05
2eva_A	307	Structural Basis For The Interaction Of Tak1 Kinase		1e-05
2e2b_A	293	Crystal Structure Of The C-Abl Kinase Domain In Com		2e-05
2z60_A	288	Crystal Structure Of The T315i Mutant Of Abl Kinase		2e-05
1fpu_A	293	Crystal Structure Of Abl Kinase Domain In Complex W		2e-05
3oy3_A	284	Crystal Structure Of Abl T315i Mutant Kinase Domain		2e-05
2hz0_A	270	Abl Kinase Domain In Complex With Nvp-Aeg082 Length		2e-05
3oxz_A	284	Crystal Structure Of Abl Kinase Domain Bound With A		2e-05
2hiw_A	287	Crystal Structure Of Inactive Conformation Abl Kina		2e-05
2qoh_A	288	Crystal Structure Of Abl Kinase Bound With Ppy-a Le		2e-05
2hyy_A	273	Human Abl Kinase Domain In Complex With Imatinib (S		2e-05
2g1t_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		2e-05
3hgk_A	327	Crystal Structure Of Effect Protein Avrptob Complex		2e-05
2qkw_B	321	Structural Basis For Activation Of Plant Immunity B		3e-05
4aoj_A	329	Human Trka In Complex With The Inhibitor Az-23 Leng		3e-05
4gt5_A	306	Crystal Structure Of The Inactive Trka Kinase Domai		3e-05
4f0i_A	300	Crystal Structure Of Apo Trka Length = 300		3e-05
2nru_A	307	Crystal Structure Of Irak-4 Length = 307		3e-05
2nry_A	307	Crystal Structure Of Irak-4 Length = 307		3e-05
2oib_A	301	Crystal Structure Of Irak4 Kinase Domain Apo Form L		3e-05
3bkb_A	377	Crystal Structure Of Human Feline Sarcoma Viral Onc		5e-05
3cd3_A	377	Crystal Structure Of Phosphorylated Human Feline Sa		6e-05
3dk7_A	277	Crystal Structure Of Mutant Abl Kinase Domain In Co		9e-05
4asz_A	299	Crystal Structure Of Apo Trkb Kinase Domain Length		9e-05
3cig_A	697	Crystal Structure Of Mouse Tlr3 Ectodomain Length =		9e-05
4aaa_A	331	Crystal Structure Of The Human Cdkl2 Kinase Domain		9e-05
3dk3_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		1e-04
3com_A	314	Crystal Structure Of Mst1 Kinase Length = 314		1e-04
4e6d_A	298	Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex W		1e-04
1ob3_A	288	Structure Of P. Falciparum Pfpk5 Length = 288		2e-04
1v0o_A	288	Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulpho		2e-04
1v0b_A	288	Crystal Structure Of The T198a Mutant Of Pfpk5 Leng		2e-04
3dk6_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		3e-04
3lpb_A	295	Crystal Structure Of Jak2 Complexed With A Potent 2		3e-04
3io7_A	313	2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Sel		3e-04
3jy9_A	311	Janus Kinase 2 Inhibitors Length = 311		3e-04
3e62_A	293	Fragment Based Discovery Of Jak-2 Inhibitors Length		3e-04
2b7a_A	293	The Structural Basis Of Janus Kinase 2 Inhibition B		3e-04
3q32_A	301	Structure Of Janus Kinase 2 With A Pyrrolotriazine		3e-04
3tjc_A	298	Co-Crystal Structure Of Jak2 With Thienopyridine 8		3e-04
4aqc_A	301	Triazolopyridine-Based Inhibitor Of Janus Kinase 2		3e-04
2w1i_A	326	Structure Determination Of Aurora Kinase In Complex		3e-04
2xa4_A	298	Inhibitors Of Jak2 Kinase Domain Length = 298		3e-04
4hge_A	300	Jak2 Kinase (Jh1 Domain) In Complex With Compound 8		3e-04
3ugc_A	295	Structural Basis Of Jak2 Inhibition By The Type Ii		3e-04
3rvg_A	303	Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido		3e-04
4e4m_A	302	Jak2 Kinase (Jh1 Domain) In Complex With Compound 3		4e-04
4bbe_A	298	Aminoalkylpyrimidine Inhibitor Complexes With Jak2		4e-04
4b8c_D	727	Nuclease Module Of The Yeast Ccr4-Not Complex Lengt		5e-04
3gvu_A	292	The Crystal Structure Of Human Abl2 In Complex With		5e-04
2w5a_A	279	Human Nek2 Kinase Adp-Bound Length = 279		5e-04
2jav_A	279	Human Kinase With Pyrrole-Indolinone Ligand Length		5e-04
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		6e-04
2wtv_A	285	Aurora-A Inhibitor Structure Length = 285		6e-04
4a4x_A	279	Nek2-Ede Bound To Cct248662 Length = 279		6e-04
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		6e-04
2wtw_A	285	Aurora-A Inhibitor Structure (2nd Crystal Form) Len		7e-04
2o8y_A	298	Apo Irak4 Kinase Domain Length = 298		7e-04
4eom_A	301	Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Hum		8e-04
4eoj_A	302	Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Huma		8e-04
1gz8_A	299	Human Cyclin Dependent Kinase 2 Complexed With The		8e-04
4eok_A	300	Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Huma		8e-04
2jgz_A	289	Crystal Structure Of Phospho-Cdk2 In Complex With C		8e-04
2iw6_A	302	Structure Of Human Thr160-Phospho Cdk2-Cyclin A Com		8e-04
1h1p_A	303	Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMP		8e-04
4eon_A	300	Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Hum		8e-04
4eoi_A	299	Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyc		8e-04
4erw_A	306	Cdk2 In Complex With Staurosporine Length = 306		8e-04
2vwu_A	302	Ephb4 Kinase Domain Inhibitor Complex Length = 302		8e-04
1oit_A	299	Imidazopyridines: A Potent And Selective Class Of C		8e-04
1vyw_A	309	Structure Of Cdk2CYCLIN A WITH PNU-292137 Length =		8e-04
3pj8_A	299	Structure Of Cdk2 In Complex With A Pyrazolo[4,3-D]		8e-04
3ezr_A	300	Cdk-2 With Indazole Inhibitor 17 Bound At Its Activ		8e-04
4eoq_A	301	Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Co		8e-04
4bcq_A	301	Structure Of Cdk2 In Complex With Cyclin A And A 2-		8e-04
1pf8_A	298	Crystal Structure Of Human Cyclin-dependent Kinase		8e-04
4eos_A	300	Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Co		8e-04
4eoo_A	299	Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3		8e-04
2w17_A	299	Cdk2 In Complex With The Imidazole Pyrimidine Amide		8e-04
1ogu_A	302	Structure Of Human Thr160-phospho Cdk2/cyclin A Com		8e-04
1fin_A	298	Cyclin A-Cyclin-Dependent Kinase 2 Complex Length =		8e-04
4eop_A	300	Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3		8e-04
1jst_A	298	Phosphorylated Cyclin-Dependent Kinase-2 Bound To C		8e-04
1qmz_A	299	Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Com		8e-04
3pxf_A	306	Cdk2 In Complex With Two Molecules Of 8-Anilino-1-N		8e-04
3bht_A	300	Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN		8e-04
1w98_A	298	The Structural Basis Of Cdk2 Activation By Cyclin E		8e-04
1e9h_A	297	Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex		8e-04
4i3z_A	296	Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNES		9e-04
3dtc_A	271	Crystal Structure Of Mixed-Lineage Kinase Mlk1 Comp		9e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  155 bits (391), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 156/564 (27%), Positives = 241/564 (42%), Gaps = 66/564 (11%)
Query: 50  AGRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDS 109
            G + ++++    +SG   D   S    L  LD+S N F   IP  +G+ + L ++ +  
Sbjct: 174 CGELKHLAISGNKISG---DVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISG 229
Query: 110 NQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFL- 168
           N+LSG     +   T LK+L+   N+  G IPP    L S++ L L  N   G +P FL 
Sbjct: 230 NKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLS 287
Query: 169 GNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSF------LPL-SVGNLTNLKSLGL 221
           G    +  L ++ N   G++    G+   L  L LS       LP+ ++  +  LK L L
Sbjct: 288 GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL 347
Query: 222 MDNHLSGSIPPSFGN---SMLTWLTLSGNHFTGYLPHNICRG--GLLEAFIVSENHFQGT 276
             N  SG +P S  N   S+LT L LS N+F+G +  N+C+     L+   +  N F G 
Sbjct: 348 SFNEFSGELPESLTNLSASLLT-LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK 406
Query: 277 IPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLG 336
           IP +L NC+ L+ + L+ N L+G I  +LG    L  + L  N   GEI         L 
Sbjct: 407 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 466
Query: 337 TLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGR 396
           TL +  N++TG IP  + N + L  + LS N + GEIPK +G+L +L  L L  N  +G 
Sbjct: 467 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 526
Query: 397 LPTEIGSLIELEYLDFSANKFNNSVPEXXXXXXXXXXX---------------------- 434
           +P E+G    L +LD + N FN ++P                                  
Sbjct: 527 IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHG 586
Query: 435 XXXXXQFXXXXXXXXXXXXXXSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIP 494
                +F              +  + +  ++GG       +  S+  L++S+N LSG IP
Sbjct: 587 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 646
Query: 495 NCFEGM------------------------HGLSIIDISDNQLQGPVPNSTAFRNAPVEA 530
                M                         GL+I+D+S N+L G +P + +      E 
Sbjct: 647 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 706
Query: 531 LEGNKELCGGVKGMQPCKVFSSHK 554
              N  L G +  M   + F   K
Sbjct: 707 DLSNNNLSGPIPEMGQFETFPPAK 730

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  155 bits (391), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 156/564 (27%), Positives = 241/564 (42%), Gaps = 66/564 (11%)
Query: 50  AGRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDS 109
            G + ++++    +SG   D   S    L  LD+S N F   IP  +G+ + L ++ +  
Sbjct: 177 CGELKHLAISGNKISG---DVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISG 232
Query: 110 NQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFL- 168
           N+LSG     +   T LK+L+   N+  G IPP    L S++ L L  N   G +P FL 
Sbjct: 233 NKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLS 290
Query: 169 GNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSF------LPL-SVGNLTNLKSLGL 221
           G    +  L ++ N   G++    G+   L  L LS       LP+ ++  +  LK L L
Sbjct: 291 GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL 350
Query: 222 MDNHLSGSIPPSFGN---SMLTWLTLSGNHFTGYLPHNICRG--GLLEAFIVSENHFQGT 276
             N  SG +P S  N   S+LT L LS N+F+G +  N+C+     L+   +  N F G 
Sbjct: 351 SFNEFSGELPESLTNLSASLLT-LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK 409
Query: 277 IPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLG 336
           IP +L NC+ L+ + L+ N L+G I  +LG    L  + L  N   GEI         L 
Sbjct: 410 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 469
Query: 337 TLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGR 396
           TL +  N++TG IP  + N + L  + LS N + GEIPK +G+L +L  L L  N  +G 
Sbjct: 470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 529
Query: 397 LPTEIGSLIELEYLDFSANKFNNSVPEXXXXXXXXXXX---------------------- 434
           +P E+G    L +LD + N FN ++P                                  
Sbjct: 530 IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHG 589
Query: 435 XXXXXQFXXXXXXXXXXXXXXSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIP 494
                +F              +  + +  ++GG       +  S+  L++S+N LSG IP
Sbjct: 590 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649
Query: 495 NCFEGM------------------------HGLSIIDISDNQLQGPVPNSTAFRNAPVEA 530
                M                         GL+I+D+S N+L G +P + +      E 
Sbjct: 650 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 709
Query: 531 LEGNKELCGGVKGMQPCKVFSSHK 554
              N  L G +  M   + F   K
Sbjct: 710 DLSNNNLSGPIPEMGQFETFPPAK 733

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 128/291 (43%), Gaps = 24/291 (8%)
Query: 3   EEADALLKWKASLQSHNQSLLPSWTNASTNVSSKISPCAWYGISCN---DAGRVTNISLR 59
           ++  ALL+ K  L   N + L SW   +T+  ++     W G+ C+      RV N+ L 
Sbjct: 6   QDKQALLQIKKDL--GNPTTLSSWL-PTTDCCNR----TWLGVLCDTDTQTYRVNNLDLS 58
Query: 60  NTGLSGTLR-DFSFSSFPQLVHLDLS-LNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIP 117
              L        S ++ P L  L +  +N   G IP  I  LT+L Y+ +    +SG IP
Sbjct: 59  GLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP 118
Query: 118 AEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNI-VR 176
             +  +  L  L F +N L G++PP +  L ++  +    N ++G++P   G+ S +   
Sbjct: 119 DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTS 178
Query: 177 LYINNNSLSGSILTNIGNLKFLF--------ELDLSFLPLSVGNLTNLKSLGLMDNHLSG 228
           + I+ N L+G I     NL   F        E D S L    G+  N + + L  N L+ 
Sbjct: 179 MTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVL---FGSDKNTQKIHLAKNSLAF 235
Query: 229 SIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPE 279
            +     +  L  L L  N   G LP  + +   L +  VS N+  G IP+
Sbjct: 236 DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 108/221 (48%), Gaps = 5/221 (2%)
Query: 206 LPLSVGNLTNLKSLGLMD-NHLSGSIPPSFGN-SMLTWLTLSGNHFTGYLPHNICRGGLL 263
           +P S+ NL  L  L +   N+L G IPP+    + L +L ++  + +G +P  + +   L
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 264 EAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNL-TFIDLSRNNFY 322
                S N   GT+P S+ +  +L+ +  +GN ++G I ++ G +  L T + +SRN   
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 323 GEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNS 382
           G+I   +     L  +++S N + G      G+    Q + L+ N +  ++ K +G   +
Sbjct: 188 GKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKN 245
Query: 383 LTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPE 423
           L  L LR N++ G LP  +  L  L  L+ S N     +P+
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 100/256 (39%), Gaps = 34/256 (13%)
Query: 301 ISEALGLYPNLTFIDLSR-NNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQL 359
           I  +L   P L F+ +   NN  G I     K  +L  L ++  N++G IP  +  +  L
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 360 QALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIEL-EYLDFSANKFN 418
             LD S N + G +P  +  L +L  +   GN+++G +P   GS  +L   +  S N+  
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 419 NSVPEXXXXXXXXXXXXXXXXQFXXXXXXXXXXXXXXSELDASHNLFGGEIPFQICSL-- 476
             +P                  F               E DAS  LFG +   Q   L  
Sbjct: 188 GKIPP----------------TFANLNLAFVDLSRNMLEGDASV-LFGSDKNTQKIHLAK 230
Query: 477 -------------KSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNSTAF 523
                        K+L  L+L +N + G +P     +  L  +++S N L G +P     
Sbjct: 231 NSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNL 290
Query: 524 RNAPVEALEGNKELCG 539
           +   V A   NK LCG
Sbjct: 291 QRFDVSAYANNKCLCG 306

>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 623 TNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR 682
           +++F  +  +G GG G VY+  L  G +VAVK+            + +F TEV+ ++   
Sbjct: 29  SDNFXNKNILGRGGFGKVYKGRLADGXLVAVKRLKEERTQ---GGELQFQTEVEMISMAV 85
Query: 683 HRNIVKFYGFCSHAQHSFLVYEFLERGSLAAILS 716
           HRN+++  GFC       LVY ++  GS+A+ L 
Sbjct: 86  HRNLLRLRGFCMTPTERLLVYPYMANGSVASCLR 119

>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 623 TNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR 682
           +++F  +  +G GG G VY+  L  G +VAVK+            + +F TEV+ ++   
Sbjct: 37  SDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEE---RXQGGELQFQTEVEMISMAV 93
Query: 683 HRNIVKFYGFCSHAQHSFLVYEFLERGSLAAILS 716
           HRN+++  GFC       LVY ++  GS+A+ L 
Sbjct: 94  HRNLLRLRGFCMTPTERLLVYPYMANGSVASCLR 127

>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 56/113 (49%), Gaps = 13/113 (11%)
Query: 608 LNFEGKLVYDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVK-----KFHSSIPC 662
           L F+G +  D++     D + +  IG G  G+V+RAE   G  VAVK      FH+    
Sbjct: 21  LYFQGAMDGDDMDIPWCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAE--- 76
Query: 663 DQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
                  EFL EV  +  +RH NIV F G  +   +  +V E+L RGSL  +L
Sbjct: 77  ----RVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLL 125

>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 56/113 (49%), Gaps = 13/113 (11%)
Query: 608 LNFEGKLVYDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVK-----KFHSSIPC 662
           L F+G +  D++     D + +  IG G  G+V+RAE   G  VAVK      FH+    
Sbjct: 21  LYFQGAMDGDDMDIPWCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAE--- 76
Query: 663 DQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
                  EFL EV  +  +RH NIV F G  +   +  +V E+L RGSL  +L
Sbjct: 77  ----RVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLL 125

>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable, Small-Molecule C- Abl Kinase Activator That Binds To The Myristoyl Binding Site Length = 298

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 6/105 (5%)
Query: 608 LNFEGKLVYDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV-VAVKKFHSSIPCDQIA 666
           L F+G   YD+   E  D   ++ +G G +G VY        + VAVK        +   
Sbjct: 10  LYFQGSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTM 64
Query: 667 DQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
           + +EFL E   + EI+H N+V+  G C+     +++ EF+  G+L
Sbjct: 65  EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNL 109

>pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In Rodent Cancer Tumor Models Length = 297

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 10/90 (11%)
Query: 632 IGNGGHGSVYRAEL----PSGE--VVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRN 685
           +G G  G V+ AE     P+ +  +VAVK          +A +K+F  E + LT ++H +
Sbjct: 23  LGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPT----LAARKDFQREAELLTNLQHEH 78
Query: 686 IVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
           IVKFYG C       +V+E+++ G L   L
Sbjct: 79  IVKFYGVCGDGDPLIMVFEYMKHGDLNKFL 108

>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 495

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 616 YDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV-VAVKKFHSSIPCDQIADQKEFLTE 674
           YD+   E  D   ++ +G G +G VY        + VAVK        +   + +EFL E
Sbjct: 212 YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKE 266
Query: 675 VQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
              + EI+H N+V+  G C+     +++ EF+  G+L
Sbjct: 267 AAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNL 303

>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To Activated Abl Kinase Domain Length = 278

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 616 YDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV-VAVKKFHSSIPCDQIADQKEFLTE 674
           YD+   E  D   ++ +G G +G VY        + VAVK        +   + +EFL E
Sbjct: 10  YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKE 64
Query: 675 VQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
              + EI+H N+V+  G C+     +++ EF+  G+L
Sbjct: 65  AAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNL 101

>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 537

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 616 YDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV-VAVKKFHSSIPCDQIADQKEFLTE 674
           YD+   E  D   ++ +G G +G VY        + VAVK        +   + +EFL E
Sbjct: 251 YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKE 305
Query: 675 VQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
              + EI+H N+V+  G C+     +++ EF+  G+L   L
Sbjct: 306 AAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYL 346

>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant Abl Mutant In Complex With The Aurora Kinase Inhibitor Vx-680 Length = 287

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 616 YDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV-VAVKKFHSSIPCDQIADQKEFLTE 674
           YD+   E  D   ++ +G G +G VY        + VAVK        +   + +EFL E
Sbjct: 6   YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKE 60
Query: 675 VQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
              + EI+H N+V+  G C+     +++ EF+  G+L
Sbjct: 61  AAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNL 97

>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With The Inhibitor Pha-739358 Length = 286

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 616 YDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV-VAVKKFHSSIPCDQIADQKEFLTE 674
           YD+   E  D   ++ +G G +G VY        + VAVK        +   + +EFL E
Sbjct: 6   YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKE 60
Query: 675 VQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
              + EI+H N+V+  G C+     +++ EF+  G+L
Sbjct: 61  AAVMKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNL 97

>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i Mutant In Complex With Dcc-2036 Length = 277

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 616 YDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV-VAVKKFHSSIPCDQIADQKEFLTE 674
           YD+   E  D   ++ +G G +G VY        + VAVK        +   + +EFL E
Sbjct: 10  YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKE 64
Query: 675 VQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
              + EI+H N+V+  G C+     +++ EF+  G+L
Sbjct: 65  AAVMKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNL 101

>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol Length = 315

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 9/94 (9%)
Query: 622 ETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI 681
           +  + + E  +G G  G V +A+  + +V A+K+  S       +++K F+ E++ L+ +
Sbjct: 7   DYKEIEVEEVVGRGAFGVVCKAKWRAKDV-AIKQIESE------SERKAFIVELRQLSRV 59
Query: 682 RHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
            H NIVK YG C +     LV E+ E GSL  +L
Sbjct: 60  NHPNIVKLYGACLNP--VCLVMEYAEGGSLYNVL 91

>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970 Length = 277

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 616 YDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV-VAVKKFHSSIPCDQIADQKEFLTE 674
           YD+   E  D   ++ +G G +G VY        + VAVK        +   + +EFL E
Sbjct: 9   YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKE 63
Query: 675 VQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
              + EI+H N+V+  G C+     +++ EF+  G+L
Sbjct: 64  AAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNL 100

>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In Complex With Dcc- 2036 Length = 277

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 616 YDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV-VAVKKFHSSIPCDQIADQKEFLTE 674
           YD+   E  D   ++ +G G +G VY        + VAVK        +   + +EFL E
Sbjct: 10  YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKE 64
Query: 675 VQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
              + EI+H N+V+  G C+     +++ EF+  G+L
Sbjct: 65  AAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNL 101

>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 616 YDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV-VAVKKFHSSIPCDQIADQKEFLTE 674
           YD+   E  D   ++ +G G +G VY        + VAVK        +   + +EFL E
Sbjct: 7   YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKE 61
Query: 675 VQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
              + EI+H N+V+  G C+     +++ EF+  G+L
Sbjct: 62  AAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNL 98

>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With Its Activating Protein Tab1 Length = 307

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 9/94 (9%)
Query: 622 ETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI 681
           +  + + E  +G G  G V +A+  + +V A+K+  S       +++K F+ E++ L+ +
Sbjct: 6   DYKEIEVEEVVGRGAFGVVCKAKWRAKDV-AIKQIESE------SERKAFIVELRQLSRV 58
Query: 682 RHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
            H NIVK YG C +     LV E+ E GSL  +L
Sbjct: 59  NHPNIVKLYGACLNP--VCLVMEYAEGGSLYNVL 90

>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex With Inno-406 Length = 293

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 616 YDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV-VAVKKFHSSIPCDQIADQKEFLTE 674
           YD+   E  D   ++ +G G +G VY        + VAVK        +   + +EFL E
Sbjct: 10  YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKE 64
Query: 675 VQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
              + EI+H N+V+  G C+     +++ EF+  G+L
Sbjct: 65  AAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNL 101

>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound With Ppy-A Length = 288

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 616 YDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV-VAVKKFHSSIPCDQIADQKEFLTE 674
           YD+   E  D   ++ +G G +G VY        + VAVK        +   + +EFL E
Sbjct: 5   YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKE 59
Query: 675 VQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
              + EI+H N+V+  G C+     +++ EF+  G+L
Sbjct: 60  AAVMKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNL 96

>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A Small Molecule Inhibitor Length = 293

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 616 YDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV-VAVKKFHSSIPCDQIADQKEFLTE 674
           YD+   E  D   ++ +G G +G VY        + VAVK        +   + +EFL E
Sbjct: 10  YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKE 64
Query: 675 VQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
              + EI+H N+V+  G C+     +++ EF+  G+L
Sbjct: 65  AAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNL 101

>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound With A Dfg- Out Inhibitor Ap24589 Length = 284

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 616 YDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV-VAVKKFHSSIPCDQIADQKEFLTE 674
           YD+   E  D   ++ +G G +G VY        + VAVK        +   + +EFL E
Sbjct: 5   YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKE 59
Query: 675 VQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
              + EI+H N+V+  G C+     +++ EF+  G+L
Sbjct: 60  AAVMKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNL 96

>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082 Length = 270

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 616 YDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV-VAVKKFHSSIPCDQIADQKEFLTE 674
           YD+   E  D   ++ +G G +G VY        + VAVK        +   + +EFL E
Sbjct: 5   YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKE 59
Query: 675 VQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
              + EI+H N+V+  G C+     +++ EF+  G+L
Sbjct: 60  AAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNL 96

>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A Dfg-Out Inhibitor Ap24534 Length = 284

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 616 YDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV-VAVKKFHSSIPCDQIADQKEFLTE 674
           YD+   E  D   ++ +G G +G VY        + VAVK        +   + +EFL E
Sbjct: 5   YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKE 59
Query: 675 VQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
              + EI+H N+V+  G C+     +++ EF+  G+L
Sbjct: 60  AAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNL 96

>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase Catalytic Domain Complexed With Type Ii Inhibitor Length = 287

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 616 YDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV-VAVKKFHSSIPCDQIADQKEFLTE 674
           YD+   E  D   ++ +G G +G VY        + VAVK        +   + +EFL E
Sbjct: 7   YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKE 61
Query: 675 VQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
              + EI+H N+V+  G C+     +++ EF+  G+L
Sbjct: 62  AAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNL 98

>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a Length = 288

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 616 YDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV-VAVKKFHSSIPCDQIADQKEFLTE 674
           YD+   E  D   ++ +G G +G VY        + VAVK        +   + +EFL E
Sbjct: 5   YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKE 59
Query: 675 VQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
              + EI+H N+V+  G C+     +++ EF+  G+L
Sbjct: 60  AAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNL 96

>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571, Glivec) Length = 273

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 616 YDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV-VAVKKFHSSIPCDQIADQKEFLTE 674
           YD+   E  D   ++ +G G +G VY        + VAVK        +   + +EFL E
Sbjct: 5   YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKE 59
Query: 675 VQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
              + EI+H N+V+  G C+     +++ EF+  G+L
Sbjct: 60  AAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNL 96

>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 616 YDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV-VAVKKFHSSIPCDQIADQKEFLTE 674
           YD+   E  D   ++ +G G +G VY        + VAVK        +   + +EFL E
Sbjct: 7   YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKE 61
Query: 675 VQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
              + EI+H N+V+  G C+     +++ EF+  G+L
Sbjct: 62  AAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNL 98

>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Query: 623 TNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR 682
           TN+FD ++ IG+G  G VY+  L  G  VA+K+     P +     +EF TE++ L+  R
Sbjct: 38  TNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKR---RTP-ESSQGIEEFETEIETLSFCR 93
Query: 683 HRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
           H ++V   GFC       L+Y+++E G+L
Sbjct: 94  HPHLVSLIGFCDERNEMILIYKYMENGNL 122

>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Query: 623 TNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR 682
           TN+FD ++ IG+G  G VY+  L  G  VA+K+     P +     +EF TE++ L+  R
Sbjct: 38  TNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKR---RTP-ESSQGIEEFETEIETLSFCR 93
Query: 683 HRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
           H ++V   GFC       L+Y+++E G+L
Sbjct: 94  HPHLVSLIGFCDERNEMILIYKYMENGNL 122

>pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23 Length = 329

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 10/96 (10%)
Query: 622 ETNDFDAEYCIGNGGHGSVYRAE----LPSGE--VVAVKKFHSSIPCDQIADQKEFLTEV 675
           +  D   ++ +G G  G V+ AE    LP  +  +VAVK    +      + +++F  E 
Sbjct: 39  KRRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEA----SESARQDFQREA 94
Query: 676 QALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
           + LT ++H++IV+F+G C+  +   +V+E++  G L
Sbjct: 95  ELLTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDL 130

>pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain Length = 306

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 10/96 (10%)
Query: 622 ETNDFDAEYCIGNGGHGSVYRAE----LPSGE--VVAVKKFHSSIPCDQIADQKEFLTEV 675
           +  D   ++ +G G  G V+ AE    LP  +  +VAVK    +      + +++F  E 
Sbjct: 16  KRRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEA----SESARQDFQREA 71
Query: 676 QALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
           + LT ++H++IV+F+G C+  +   +V+E++  G L
Sbjct: 72  ELLTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDL 107

>pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka Length = 300

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 10/96 (10%)
Query: 622 ETNDFDAEYCIGNGGHGSVYRAE----LPSGE--VVAVKKFHSSIPCDQIADQKEFLTEV 675
           +  D   ++ +G G  G V+ AE    LP  +  +VAVK    +      + +++F  E 
Sbjct: 10  KRRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEA----SESARQDFQREA 65
Query: 676 QALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
           + LT ++H++IV+F+G C+  +   +V+E++  G L
Sbjct: 66  ELLTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDL 101

>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
Query: 618 EIVRETNDFDAEYC------IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEF 671
           E+   TN+FD          +G GG G VY+  + +   VAVKK  + +       +++F
Sbjct: 19  ELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQF 77
Query: 672 LTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAILS 716
             E++ + + +H N+V+  GF S      LVY ++  GSL   LS
Sbjct: 78  DQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLS 122

>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
Query: 618 EIVRETNDFDAEYC------IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEF 671
           E+   TN+FD          +G GG G VY+  + +   VAVKK  + +       +++F
Sbjct: 19  ELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQF 77
Query: 672 LTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAILS 716
             E++ + + +H N+V+  GF S      LVY ++  GSL   LS
Sbjct: 78  DQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLS 122

>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
Query: 618 EIVRETNDFDAEYC------IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEF 671
           E+   TN+FD          +G GG G VY+  + +   VAVKK  + +       +++F
Sbjct: 13  ELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQF 71
Query: 672 LTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAILS 716
             E++ + + +H N+V+  GF S      LVY ++  GSL   LS
Sbjct: 72  DQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLS 116

>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene Homologue (V- Fes) Length = 377

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 632 IGNGGHGSVYRAELPSG-EVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
           IG G  G V+   L +   +VAVK    ++P D  A   +FL E + L +  H NIV+  
Sbjct: 122 IGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKA---KFLQEARILKQYSHPNIVRLI 178
Query: 691 GFCSHAQHSFLVYEFLERGSLAAIL 715
           G C+  Q  ++V E ++ G     L
Sbjct: 179 GVCTQKQPIYIVMELVQGGDFLTFL 203

>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma Viral Oncogene Homologue (V-Fes) In Complex With Staurosporine And A Consensus Peptide Length = 377

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 632 IGNGGHGSVYRAELPSG-EVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
           IG G  G V+   L +   +VAVK    ++P D  A   +FL E + L +  H NIV+  
Sbjct: 122 IGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKA---KFLQEARILKQYSHPNIVRLI 178
Query: 691 GFCSHAQHSFLVYEFLERGSLAAIL 715
           G C+  Q  ++V E ++ G     L
Sbjct: 179 GVCTQKQPIYIVMELVQGGDFLTFL 203

>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 277

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
Query: 617 DEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV-VAVKKFHSSIPCDQIADQKEFLTEV 675
           D+   E  D   ++ +G G +G VY        + VAVK        +   + +EFL E 
Sbjct: 4   DKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKEA 58
Query: 676 QALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
             + EI+H N+V+  G C+     +++ EF+  G+L
Sbjct: 59  AVMKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNL 94

>pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain Length = 299

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 14/92 (15%)
Query: 632 IGNGGHGSVYRAEL----PSGE--VVAVKKFHSSIPCDQIAD--QKEFLTEVQALTEIRH 683
           +G G  G V+ AE     P  +  +VAVK    +      +D  +K+F  E + LT ++H
Sbjct: 21  LGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDA------SDNARKDFHREAELLTNLQH 74
Query: 684 RNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
            +IVKFYG C       +V+E+++ G L   L
Sbjct: 75  EHIVKFYGVCVEGDPLIMVFEYMKHGDLNKFL 106

>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 118/291 (40%), Gaps = 24/291 (8%)
Query: 81  LDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSI 140
           L+L+ N      P+     ++L+ +    N +S   P    +L  LKVL+ Q NEL    
Sbjct: 30  LNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELSQIS 89
Query: 141 PPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFE 200
                  +++ EL L SN ++        N  N+++L +++N LS    T +G       
Sbjct: 90  DQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSS---TKLGT------ 140
Query: 201 LDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRG 260
             +    L    L   K L L    L        GNS L  L LS N    + P      
Sbjct: 141 -GVQLENLQELLLAKNKILALRSEELEF-----LGNSSLRKLDLSSNPLKEFSPGCFQTI 194
Query: 261 GLLEAFIVSENHFQGTIPESLRNC-----TSLIRVRLNGNNLTGNISEAL-GL-YPNLTF 313
           G L A +++       + E L  C     TS+  + L  N L         GL + NLT 
Sbjct: 195 GKLFALLLNNAQLNPHLTEKL--CWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQ 252
Query: 314 IDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDL 364
           +DLS NN +   + ++   P L  L++  NNI    PR    +S L+ L L
Sbjct: 253 LDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSL 303

>pdb|4AAA|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain Length = 331

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 632 IGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
           +G G +G V +     +G +VA+KKF  S   D    +K  + E++ L ++RH N+V   
Sbjct: 33  VGEGSYGMVMKCRNKDTGRIVAIKKFLESD--DDKMVKKIAMREIKLLKQLRHENLVNLL 90
Query: 691 GFCSHAQHSFLVYEFLERGSL 711
             C   +  +LV+EF++   L
Sbjct: 91  EVCKKKKRWYLVFEFVDHTIL 111

>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
Query: 617 DEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV-VAVKKFHSSIPCDQIADQKEFLTEV 675
           D+   E  D   ++ +G G +G VY        + VAVK        +   + +EFL E 
Sbjct: 4   DKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKEA 58
Query: 676 QALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
             + EI+H N+V+  G C+     +++ EF+  G+L
Sbjct: 59  AVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNL 94

>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase Length = 314

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 58/105 (55%), Gaps = 8/105 (7%)
Query: 613 KLVYDEIVRETND-FDAEYCIGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKE 670
           KL  D + ++  + FD    +G G +GSVY+A    +G++VA+K+    +P +  +D +E
Sbjct: 17  KLDEDSLTKQPEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQ----VPVE--SDLQE 70
Query: 671 FLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
            + E+  + +    ++VK+YG        ++V E+   GS++ I+
Sbjct: 71  IIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVMEYCGAGSVSDII 115

>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With Compound 7 Length = 298

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 632 IGNGGHGSVYRAELP-----SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNI 686
           +G G  GSV           +GEVVAVKK   S         ++F  E++ L  ++H NI
Sbjct: 21  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTE----EHLRDFEREIEILKSLQHDNI 76
Query: 687 VKFYGFCSHA--QHSFLVYEFLERGSLAAILS 716
           VK+ G C  A  ++  L+ EFL  GSL   L 
Sbjct: 77  VKYKGVCYSAGRRNLKLIMEFLPYGSLREYLQ 108

>pdb|1OB3|A Chain A, Structure Of P. Falciparum Pfpk5 Length = 288

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG 691
           IG G +G VY+A+   GE  A+KK       + I      + E+  L E++H NIVK Y 
Sbjct: 10  IGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTT--IREISILKELKHSNIVKLYD 67
Query: 692 FCSHAQHSFLVYEFLER 708
                +   LV+E L++
Sbjct: 68  VIHTKKRLVLVFEHLDQ 84

>pdb|1V0O|A Chain A, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate Ligand Complex Length = 288

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG 691
           IG G +G VY+A+   GE  A+KK       + I      + E+  L E++H NIVK Y 
Sbjct: 10  IGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTT--IREISILKELKHSNIVKLYD 67
Query: 692 FCSHAQHSFLVYEFLER 708
                +   LV+E L++
Sbjct: 68  VIHTKKRLVLVFEHLDQ 84

>pdb|1V0B|A Chain A, Crystal Structure Of The T198a Mutant Of Pfpk5 Length = 288

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG 691
           IG G +G VY+A+   GE  A+KK       + I      + E+  L E++H NIVK Y 
Sbjct: 10  IGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTT--IREISILKELKHSNIVKLYD 67
Query: 692 FCSHAQHSFLVYEFLER 708
                +   LV+E L++
Sbjct: 68  VIHTKKRLVLVFEHLDQ 84

>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Query: 617 DEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV-VAVKKFHSSIPCDQIADQKEFLTEV 675
           D+   E  D   ++ +G G  G VY        + VAVK        +   + +EFL E 
Sbjct: 4   DKWEMERTDITMKHKLGGGQFGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKEA 58
Query: 676 QALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
             + EI+H N+V+  G C+     +++ EF+  G+L
Sbjct: 59  AVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNL 94

>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent 2,8-Diaryl Quinoxaline Inhibitor Length = 295

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 632 IGNGGHGSVYRAELP-----SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNI 686
           +G G  GSV           +GEVVAVKK   S         ++F  E++ L  ++H NI
Sbjct: 18  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTE----EHLRDFEREIEILKSLQHDNI 73
Query: 687 VKFYGFCSHA--QHSFLVYEFLERGSLAAILS 716
           VK+ G C  A  ++  L+ E+L  GSL   L 
Sbjct: 74  VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ 105

>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective Inhibitors Of Jak2 Length = 313

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 632 IGNGGHGSVYRAELP-----SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNI 686
           +G G  GSV           +GEVVAVKK   S         ++F  E++ L  ++H NI
Sbjct: 36  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTE----EHLRDFEREIEILKSLQHDNI 91
Query: 687 VKFYGFCSHA--QHSFLVYEFLERGSLAAILS 716
           VK+ G C  A  ++  L+ E+L  GSL   L 
Sbjct: 92  VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ 123

>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors Length = 311

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 632 IGNGGHGSVYRAELP-----SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNI 686
           +G G  GSV           +GEVVAVKK   S         ++F  E++ L  ++H NI
Sbjct: 36  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTE----EHLRDFEREIEILKSLQHDNI 91
Query: 687 VKFYGFCSHA--QHSFLVYEFLERGSLAAILS 716
           VK+ G C  A  ++  L+ E+L  GSL   L 
Sbjct: 92  VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ 123

>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors Length = 293

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 632 IGNGGHGSVYRAELP-----SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNI 686
           +G G  GSV           +GEVVAVKK   S         ++F  E++ L  ++H NI
Sbjct: 17  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTE----EHLRDFEREIEILKSLQHDNI 72
Query: 687 VKFYGFCSHA--QHSFLVYEFLERGSLAAILS 716
           VK+ G C  A  ++  L+ E+L  GSL   L 
Sbjct: 73  VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ 104

>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A Potent And Specific Pan-Janus Kinase Inhibitor Length = 293

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 632 IGNGGHGSVYRAELP-----SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNI 686
           +G G  GSV           +GEVVAVKK   S         ++F  E++ L  ++H NI
Sbjct: 16  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTE----EHLRDFEREIEILKSLQHDNI 71
Query: 687 VKFYGFCSHA--QHSFLVYEFLERGSLAAILS 716
           VK+ G C  A  ++  L+ E+L  GSL   L 
Sbjct: 72  VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ 103

>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine Inhibitor Length = 301

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 632 IGNGGHGSVYRAELP-----SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNI 686
           +G G  GSV           +GEVVAVKK   S         ++F  E++ L  ++H NI
Sbjct: 18  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTE----EHLRDFEREIEILKSLQHDNI 73
Query: 687 VKFYGFCSHA--QHSFLVYEFLERGSLAAILS 716
           VK+ G C  A  ++  L+ E+L  GSL   L 
Sbjct: 74  VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ 105

>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8 Length = 298

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 632 IGNGGHGSVYRAELP-----SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNI 686
           +G G  GSV           +GEVVAVKK   S         ++F  E++ L  ++H NI
Sbjct: 21  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTE----EHLRDFEREIEILKSLQHDNI 76
Query: 687 VKFYGFCSHA--QHSFLVYEFLERGSLAAILS 716
           VK+ G C  A  ++  L+ E+L  GSL   L 
Sbjct: 77  VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ 108

>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2 Length = 301

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 632 IGNGGHGSVYRAELP-----SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNI 686
           +G G  GSV           +GEVVAVKK   S         ++F  E++ L  ++H NI
Sbjct: 24  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTE----EHLRDFEREIEILKSLQHDNI 79
Query: 687 VKFYGFCSHA--QHSFLVYEFLERGSLAAILS 716
           VK+ G C  A  ++  L+ E+L  GSL   L 
Sbjct: 80  VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ 111

>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 326

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 632 IGNGGHGSVYRAELP-----SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNI 686
           +G G  GSV           +GEVVAVKK   S         ++F  E++ L  ++H NI
Sbjct: 49  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTE----EHLRDFEREIEILKSLQHDNI 104
Query: 687 VKFYGFCSHA--QHSFLVYEFLERGSLAAILS 716
           VK+ G C  A  ++  L+ E+L  GSL   L 
Sbjct: 105 VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ 136

>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain Length = 298

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 632 IGNGGHGSVYRAELP-----SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNI 686
           +G G  GSV           +GEVVAVKK   S         ++F  E++ L  ++H NI
Sbjct: 21  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTE----EHLRDFEREIEILKSLQHDNI 76
Query: 687 VKFYGFCSHA--QHSFLVYEFLERGSLAAILS 716
           VK+ G C  A  ++  L+ E+L  GSL   L 
Sbjct: 77  VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ 108

>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8 Length = 300

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 632 IGNGGHGSVYRAELP-----SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNI 686
           +G G  GSV           +GEVVAVKK   S         ++F  E++ L  ++H NI
Sbjct: 23  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTE----EHLRDFEREIEILKSLQHDNI 78
Query: 687 VKFYGFCSHA--QHSFLVYEFLERGSLAAILS 716
           VK+ G C  A  ++  L+ E+L  GSL   L 
Sbjct: 79  VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ 110

>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii Inhibtor Nvp-Bbt594 Length = 295

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 632 IGNGGHGSVYRAELP-----SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNI 686
           +G G  GSV           +GEVVAVKK   S         ++F  E++ L  ++H NI
Sbjct: 18  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTE----EHLRDFEREIEILKSLQHDNI 73
Query: 687 VKFYGFCSHA--QHSFLVYEFLERGSLAAILS 716
           VK+ G C  A  ++  L+ E+L  GSL   L 
Sbjct: 74  VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ 105

>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor Length = 303

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 632 IGNGGHGSVYRAELP-----SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNI 686
           +G G  GSV           +GEVVAVKK   S         ++F  E++ L  ++H NI
Sbjct: 22  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTE----EHLRDFEREIEILKSLQHDNI 77
Query: 687 VKFYGFCSHA--QHSFLVYEFLERGSLAAILS 716
           VK+ G C  A  ++  L+ E+L  GSL   L 
Sbjct: 78  VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ 109

>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 632 IGNGGHGSVYRAELP-----SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNI 686
           +G G  GSV           +GEVVAVKK   S         ++F  E++ L  ++H NI
Sbjct: 25  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTE----EHLRDFEREIEILKSLQHDNI 80
Query: 687 VKFYGFCSHA--QHSFLVYEFLERGSLAAILS 716
           VK+ G C  A  ++  L+ E+L  GSL   L 
Sbjct: 81  VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ 112

>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2 Length = 298

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 632 IGNGGHGSVYRAELP-----SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNI 686
           +G G  GSV           +GEVVAVKK   S         ++F  E++ L  ++H NI
Sbjct: 19  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTE----EHLRDFEREIEILKSLQHDNI 74
Query: 687 VKFYGFCSHA--QHSFLVYEFLERGSLAAILS 716
           VK+ G C  A  ++  L+ E+L  GSL   L 
Sbjct: 75  VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ 106

>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex Length = 727

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 53/102 (51%), Gaps = 4/102 (3%)
Query: 314 IDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEI 373
           +DLS    +  IS+N  K   L  L ++ N++T  +P EI N+S L+ LDLS N +   +
Sbjct: 229 LDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLTE-LPAEIKNLSNLRVLDLSHNRLTS-L 285
Query: 374 PKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSAN 415
           P ELG    L       N +T  LP E G+L  L++L    N
Sbjct: 286 PAELGSCFQLKYFYFFDNMVTT-LPWEFGNLCNLQFLGVEGN 326

>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With Gleevec Length = 292

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 12/99 (12%)
Query: 617 DEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQ----KEFL 672
           D+   E  D   ++ +G G +G VY        V   KK+  ++    + +     +EFL
Sbjct: 25  DKWEMERTDITMKHKLGGGQYGEVY--------VGVWKKYSLTVAVKTLKEDTMEVEEFL 76
Query: 673 TEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
            E   + EI+H N+V+  G C+     ++V E++  G+L
Sbjct: 77  KEAAVMKEIKHPNLVQLLGVCTLEPPFYIVTEYMPYGNL 115

>pdb|2W5A|A Chain A, Human Nek2 Kinase Adp-Bound Length = 279

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 52/97 (53%), Gaps = 5/97 (5%)
Query: 623 TNDFDAEYCIGNGGHGSVYRAELPS-GEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI 681
             D++  Y IG G +G   +    S G+++  K+       +  A+++  ++EV  L E+
Sbjct: 5   AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTE--AEKQMLVSEVNLLREL 62
Query: 682 RHRNIVKFYGFCSHAQHS--FLVYEFLERGSLAAILS 716
           +H NIV++Y       ++  ++V E+ E G LA++++
Sbjct: 63  KHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVIT 99

>pdb|2JAV|A Chain A, Human Kinase With Pyrrole-Indolinone Ligand Length = 279

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 52/97 (53%), Gaps = 5/97 (5%)
Query: 623 TNDFDAEYCIGNGGHGSVYRAELPS-GEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI 681
             D++  Y IG G +G   +    S G+++  K+       +  A+++  ++EV  L E+
Sbjct: 5   AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTE--AEKQMLVSEVNLLREL 62
Query: 682 RHRNIVKFYGFCSHAQHS--FLVYEFLERGSLAAILS 716
           +H NIV++Y       ++  ++V E+ E G LA++++
Sbjct: 63  KHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVIT 99

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 83/164 (50%), Gaps = 19/164 (11%)
Query: 67  LRDF-SFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTH 125
           L+D  + +S   L  LDL+ N      P  +  LTKL+ + L +NQ+S   P  +  LT 
Sbjct: 228 LKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTA 283
Query: 126 LKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLS 185
           L  L    N+L+   P  +  L ++  L LY N+++   P  + +L+ + RL+ +NN +S
Sbjct: 284 LTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVS 339
Query: 186 G-SILTNIGNLKFLFE-----LDLSFLPLSVGNLTNLKSLGLMD 223
             S L N+ N+ +L        DL+  PL   NLT +  LGL D
Sbjct: 340 DVSSLANLTNINWLSAGHNQISDLT--PL--ANLTRITQLGLND 379

>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure Length = 285

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/88 (25%), Positives = 41/88 (46%)
Query: 624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRH 683
            DF+    +G G  G+VY A     + +   K       ++   + +   EV+  + +RH
Sbjct: 13  EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRH 72
Query: 684 RNIVKFYGFCSHAQHSFLVYEFLERGSL 711
            NI++ YG+   A   +L+ E+  RG +
Sbjct: 73  PNILRLYGYFHDATRVYLILEYAPRGEV 100

>pdb|4A4X|A Chain A, Nek2-Ede Bound To Cct248662 Length = 279

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 52/97 (53%), Gaps = 5/97 (5%)
Query: 623 TNDFDAEYCIGNGGHGSVYRAELPS-GEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI 681
             D++  Y IG G +G   +    S G+++  K+       +  A+++  ++EV  L E+
Sbjct: 5   AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTE--AEKQMLVSEVNLLREL 62
Query: 682 RHRNIVKFYGFCSHAQHS--FLVYEFLERGSLAAILS 716
           +H NIV++Y       ++  ++V E+ E G LA++++
Sbjct: 63  KHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVIT 99

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 83/164 (50%), Gaps = 19/164 (11%)
Query: 67  LRDF-SFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTH 125
           L+D  + +S   L  LDL+ N      P  +  LTKL+ + L +NQ+S   P  +  LT 
Sbjct: 229 LKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTA 284
Query: 126 LKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLS 185
           L  L    N+L+   P  +  L ++  L LY N+++   P  + +L+ + RL+ +NN +S
Sbjct: 285 LTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVS 340
Query: 186 G-SILTNIGNLKFLFE-----LDLSFLPLSVGNLTNLKSLGLMD 223
             S L N+ N+ +L        DL+  PL   NLT +  LGL D
Sbjct: 341 DVSSLANLTNINWLSAGHNQISDLT--PL--ANLTRITQLGLND 380

>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form) Length = 285

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/88 (25%), Positives = 41/88 (46%)
Query: 624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRH 683
            DF+    +G G  G+VY A     + +   K       ++   + +   EV+  + +RH
Sbjct: 13  EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRH 72
Query: 684 RNIVKFYGFCSHAQHSFLVYEFLERGSL 711
            NI++ YG+   A   +L+ E+  RG +
Sbjct: 73  PNILRLYGYFHDATRVYLILEYAPRGEV 100

>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 633 GNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGF 692
           G GG G VY+  + +   VAVKK  + +       +++F  E++   + +H N+V+  GF
Sbjct: 31  GEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVXAKCQHENLVELLGF 89
Query: 693 CSHAQHSFLVYEFLERGSLAAILS 716
            S      LVY +   GSL   LS
Sbjct: 90  SSDGDDLCLVYVYXPNGSLLDRLS 113

>pdb|4EOM|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human Cyclin A3 Complex With Atp Length = 301

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
           IG G +G VY+A    +GEVVA+KK       + +      + E+  L E+ H NIVK  
Sbjct: 14  IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 71
Query: 691 GFCSHAQHSFLVYEFL 706
                    +LV+EFL
Sbjct: 72  DVIHTENKLYLVFEFL 87

>pdb|4EOJ|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human Cyclin A3 Complex With Atp Length = 302

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
           IG G +G VY+A    +GEVVA+KK       + +      + E+  L E+ H NIVK  
Sbjct: 14  IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 71
Query: 691 GFCSHAQHSFLVYEFL 706
                    +LV+EFL
Sbjct: 72  DVIHTENKLYLVFEFL 87

>pdb|1GZ8|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Inhibitor 2-Amino-6-(3'-Methyl-2'-Oxo)butoxypurine Length = 299

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
           IG G +G VY+A    +GEVVA+KK       + +      + E+  L E+ H NIVK  
Sbjct: 11  IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 68
Query: 691 GFCSHAQHSFLVYEFLER 708
                    +LV+EFL +
Sbjct: 69  DVIHTENKLYLVFEFLHQ 86

>pdb|4EOK|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human Cyclin A3 Complex With The Inhibitor Nu6102 Length = 300

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
           IG G +G VY+A    +GEVVA+KK       + +      + E+  L E+ H NIVK  
Sbjct: 13  IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 70
Query: 691 GFCSHAQHSFLVYEFL 706
                    +LV+EFL
Sbjct: 71  DVIHTENKLYLVFEFL 86

>pdb|2JGZ|A Chain A, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B Length = 289

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
           IG G +G VY+A    +GEVVA+KK       + +      + E+  L E+ H NIVK  
Sbjct: 11  IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 68
Query: 691 GFCSHAQHSFLVYEFLER 708
                    +LV+EFL +
Sbjct: 69  DVIHTENKLYLVFEFLHQ 86

>pdb|2IW6|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed With A Bisanilinopyrimidine Inhibitor Length = 302

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
           IG G +G VY+A    +GEVVA+KK       + +      + E+  L E+ H NIVK  
Sbjct: 14  IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 71
Query: 691 GFCSHAQHSFLVYEFLER 708
                    +LV+EFL +
Sbjct: 72  DVIHTENKLYLVFEFLHQ 89

>pdb|1H1P|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED With The Inhibitor Nu2058 Length = 303

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
           IG G +G VY+A    +GEVVA+KK       + +      + E+  L E+ H NIVK  
Sbjct: 15  IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 72
Query: 691 GFCSHAQHSFLVYEFLER 708
                    +LV+EFL +
Sbjct: 73  DVIHTENKLYLVFEFLHQ 90

>pdb|4EON|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
           IG G +G VY+A    +GEVVA+KK       + +      + E+  L E+ H NIVK  
Sbjct: 12  IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 69
Query: 691 GFCSHAQHSFLVYEFL 706
                    +LV+EFL
Sbjct: 70  DVIHTENKLYLVFEFL 85

>pdb|4EOI|A Chain A, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 299

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
           IG G +G VY+A    +GEVVA+KK       + +      + E+  L E+ H NIVK  
Sbjct: 11  IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 68
Query: 691 GFCSHAQHSFLVYEFLER 708
                    +LV+EFL +
Sbjct: 69  DVIHTENKLYLVFEFLHQ 86

>pdb|4ERW|A Chain A, Cdk2 In Complex With Staurosporine Length = 306

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
           IG G +G VY+A    +GEVVA+KK       + +      + E+  L E+ H NIVK  
Sbjct: 18  IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 75
Query: 691 GFCSHAQHSFLVYEFLER 708
                    +LV+EFL +
Sbjct: 76  DVIHTENKLYLVFEFLHQ 93

>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex Length = 302

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 13/109 (11%)
Query: 617 DEIVRE-TNDFDAEYC-----IGNGGHGSVYRAELPSG----EVVAVKKFHSSIPCDQIA 666
           +E VRE   + D  Y      IG G  G V R  L +       VA+K         Q  
Sbjct: 3   NEAVREFAKEIDVSYVKIEEVIGAGEFGEVCRGRLKAPGKKESCVAIKTLKGGYTERQ-- 60
Query: 667 DQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
            ++EFL+E   + +  H NI++  G  +++    ++ EF+E G+L + L
Sbjct: 61  -RREFLSEASIMGQFEHPNIIRLEGVVTNSMPVMILTEFMENGALDSFL 108

>pdb|1OIT|A Chain A, Imidazopyridines: A Potent And Selective Class Of Cyclin-dependent Kinase Inhibitors Identified Through Structure-based Hybridisation Length = 299

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
           IG G +G VY+A    +GEVVA+KK       + +      + E+  L E+ H NIVK  
Sbjct: 11  IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 68
Query: 691 GFCSHAQHSFLVYEFLER 708
                    +LV+EFL +
Sbjct: 69  DVIHTENKLYLVFEFLHQ 86

>pdb|1VYW|A Chain A, Structure Of Cdk2CYCLIN A WITH PNU-292137 Length = 309

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 622 ETNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTE 680
           +  +F     IG G +G VY+A    +GEVVA+KK       + +      + E+  L E
Sbjct: 5   DMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKE 62
Query: 681 IRHRNIVKFYGFCSHAQHSFLVYEFLER 708
           + H NIVK           +LV+EFL +
Sbjct: 63  LNHPNIVKLLDVIHTENKLYLVFEFLHQ 90

>pdb|3PJ8|A Chain A, Structure Of Cdk2 In Complex With A Pyrazolo[4,3-D]pyrimidine Bioisostere Of Roscovitine Length = 299

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
           IG G +G VY+A    +GEVVA+KK       + +      + E+  L E+ H NIVK  
Sbjct: 11  IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 68
Query: 691 GFCSHAQHSFLVYEFLER 708
                    +LV+EFL +
Sbjct: 69  DVIHTENKLYLVFEFLHQ 86

>pdb|3EZR|A Chain A, Cdk-2 With Indazole Inhibitor 17 Bound At Its Active Site Length = 300

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
           IG G +G VY+A    +GEVVA+KK       + +      + E+  L E+ H NIVK  
Sbjct: 12  IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 69
Query: 691 GFCSHAQHSFLVYEFLER 708
                    +LV+EFL +
Sbjct: 70  DVIHTENKLYLVFEFLHQ 87

>pdb|4EOQ|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex With Atp Length = 301

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
           IG G +G VY+A    +GEVVA+KK       + +      + E+  L E+ H NIVK  
Sbjct: 14  IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 71
Query: 691 GFCSHAQHSFLVYEFLER 708
                    +LV+EFL +
Sbjct: 72  DVIHTENKLYLVFEFLHQ 89

>pdb|4BCQ|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 301

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
           IG G +G VY+A    +GEVVA+KK       + +      + E+  L E+ H NIVK  
Sbjct: 13  IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 70
Query: 691 GFCSHAQHSFLVYEFLER 708
                    +LV+EFL +
Sbjct: 71  DVIHTENKLYLVFEFLHQ 88

>pdb|1PF8|A Chain A, Crystal Structure Of Human Cyclin-dependent Kinase 2 Complexed With A Nucleoside Inhibitor Length = 298

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
           IG G +G VY+A    +GEVVA+KK       + +      + E+  L E+ H NIVK  
Sbjct: 10  IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 67
Query: 691 GFCSHAQHSFLVYEFLER 708
                    +LV+EFL +
Sbjct: 68  DVIHTENKLYLVFEFLHQ 85

>pdb|4EOS|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
           IG G +G VY+A    +GEVVA+KK       + +      + E+  L E+ H NIVK  
Sbjct: 13  IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 70
Query: 691 GFCSHAQHSFLVYEFLER 708
                    +LV+EFL +
Sbjct: 71  DVIHTENKLYLVFEFLHQ 88

>pdb|4EOO|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3 Complex With Atp Length = 299

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
           IG G +G VY+A    +GEVVA+KK       + +      + E+  L E+ H NIVK  
Sbjct: 12  IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 69
Query: 691 GFCSHAQHSFLVYEFLER 708
                    +LV+EFL +
Sbjct: 70  DVIHTENKLYLVFEFLHQ 87

>pdb|2W17|A Chain A, Cdk2 In Complex With The Imidazole Pyrimidine Amide, Compound (S)-8b Length = 299

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
           IG G +G VY+A    +GEVVA+KK       + +      + E+  L E+ H NIVK  
Sbjct: 11  IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 68
Query: 691 GFCSHAQHSFLVYEFLER 708
                    +LV+EFL +
Sbjct: 69  DVIHTENKLYLVFEFLHQ 86

>pdb|1OGU|A Chain A, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed With A 2-arylamino-4-cyclohexylmethyl-5-nitroso-6- aminopyrimidine Inhibitor Length = 302

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
           IG G +G VY+A    +GEVVA+KK       + +      + E+  L E+ H NIVK  
Sbjct: 14  IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 71
Query: 691 GFCSHAQHSFLVYEFLER 708
                    +LV+EFL +
Sbjct: 72  DVIHTENKLYLVFEFLHQ 89

>pdb|1FIN|A Chain A, Cyclin A-Cyclin-Dependent Kinase 2 Complex Length = 298

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
           IG G +G VY+A    +GEVVA+KK       + +      + E+  L E+ H NIVK  
Sbjct: 10  IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 67
Query: 691 GFCSHAQHSFLVYEFLER 708
                    +LV+EFL +
Sbjct: 68  DVIHTENKLYLVFEFLHQ 85

>pdb|4EOP|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
           IG G +G VY+A    +GEVVA+KK       + +      + E+  L E+ H NIVK  
Sbjct: 13  IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 70
Query: 691 GFCSHAQHSFLVYEFLER 708
                    +LV+EFL +
Sbjct: 71  DVIHTENKLYLVFEFLHQ 88

>pdb|1JST|A Chain A, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A Length = 298

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
           IG G +G VY+A    +GEVVA+KK       + +      + E+  L E+ H NIVK  
Sbjct: 10  IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 67
Query: 691 GFCSHAQHSFLVYEFLER 708
                    +LV+EFL +
Sbjct: 68  DVIHTENKLYLVFEFLHQ 85

>pdb|1QMZ|A Chain A, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex Length = 299

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
           IG G +G VY+A    +GEVVA+KK       + +      + E+  L E+ H NIVK  
Sbjct: 11  IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 68
Query: 691 GFCSHAQHSFLVYEFLER 708
                    +LV+EFL +
Sbjct: 69  DVIHTENKLYLVFEFLHQ 86

>pdb|3PXF|A Chain A, Cdk2 In Complex With Two Molecules Of 8-Anilino-1-Naphthalene Sulfonate Length = 306

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
           IG G +G VY+A    +GEVVA+KK       + +      + E+  L E+ H NIVK  
Sbjct: 18  IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 75
Query: 691 GFCSHAQHSFLVYEFLER 708
                    +LV+EFL +
Sbjct: 76  DVIHTENKLYLVFEFLHQ 93

>pdb|3BHT|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX WITH THE Inhibitor Meriolin 3 Length = 300

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
           IG G +G VY+A    +GEVVA+KK       + +      + E+  L E+ H NIVK  
Sbjct: 12  IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 69
Query: 691 GFCSHAQHSFLVYEFLER 708
                    +LV+EFL +
Sbjct: 70  DVIHTENKLYLVFEFLHQ 87

>pdb|1W98|A Chain A, The Structural Basis Of Cdk2 Activation By Cyclin E Length = 298

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
           IG G +G VY+A    +GEVVA+KK       + +      + E+  L E+ H NIVK  
Sbjct: 11  IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 68
Query: 691 GFCSHAQHSFLVYEFLER 708
                    +LV+EFL +
Sbjct: 69  DVIHTENKLYLVFEFLHQ 86

>pdb|1E9H|A Chain A, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With The Inhibitor Indirubin-5-Sulphonate Bound Length = 297

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
           IG G +G VY+A    +GEVVA+KK       + +      + E+  L E+ H NIVK  
Sbjct: 11  IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 68
Query: 691 GFCSHAQHSFLVYEFLER 708
                    +LV+EFL +
Sbjct: 69  DVIHTENKLYLVFEFLHQ 86

>pdb|4I3Z|A Chain A, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM IONS Length = 296

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
           IG G +G VY+A    +GEVVA+KK       + +      + E+  L E+ H NIVK  
Sbjct: 10  IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 67
Query: 691 GFCSHAQHSFLVYEFLER 708
                    +LV+EFL +
Sbjct: 68  DVIHTENKLYLVFEFLHQ 85

>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed With Compound 16 Length = 271

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 629 EYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKE-FLTEVQALTEIRHRNIV 687
           E  IG GG G VYRA    G+ VAVK      P + I+   E    E +    ++H NI+
Sbjct: 12  EEIIGIGGFGKVYRA-FWIGDEVAVKAARHD-PDEDISQTIENVRQEAKLFAMLKHPNII 69
Query: 688 KFYGFCSHAQHSFLVYEFLERGSLAAILS 716
              G C    +  LV EF   G L  +LS
Sbjct: 70  ALRGVCLKEPNLCLVMEFARGGPLNRVLS 98

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	716
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-142
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-133
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-132
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-83
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-72
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-81
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-79
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-65
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-59
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-27
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-14
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-76
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-67
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-42
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-35
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-75
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-74
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-49
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-35
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-34
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-25
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-73
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-70
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-21
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-71
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-67
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-67
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-25
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-24
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-65
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-59
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-56
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-41
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-41
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-54
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-53
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-46
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-52
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-43
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-41
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-28
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-25
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-22
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-18
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-51
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-47
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-45
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-36
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-35
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-49
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-42
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-36
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-49
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-44
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-41
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-30
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-29
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-45
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-44
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-38
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-43
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-35
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-29
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-20
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-40
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-38
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-37
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-27
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-38
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-36
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-35
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-32
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-31
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-28
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-22
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-38
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-23
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-22
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-17
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-15
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-37
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-36
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-35
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-30
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-36
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-34
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-27
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-25
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-35
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-35
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-34
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-28
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-27
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-23
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-33
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-32
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-24
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-17
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-33
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-27
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-27
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-20
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-15
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-30
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-29
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-30
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-25
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-21
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-30
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-29
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-28
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-26
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-21
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-19
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	9e-28
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	4e-27
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-27
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-20
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-26
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-21
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-24
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-23
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-23
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-23
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-20
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-18
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-23
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-21
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-21
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-18
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-22
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-22
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-22
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-13
3soc_A	322	Activin receptor type-2A; structural genomics cons	4e-22
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	6e-22
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-22
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-19
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-19
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-09
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	3e-21
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-20
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-20
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-19
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-18
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-16
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-04
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	1e-19
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	2e-19
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-19
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-19
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-19
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-14
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	5e-19
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	1e-18
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-17
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-17
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-15
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-15
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-11
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	2e-17
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	3e-17
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	7e-17
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-16
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-10
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-11
3q4u_A	301	Activin receptor type-1; structural genomics conso	8e-16
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-16
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-11
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	2e-15
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	3e-15
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-15
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-13
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-05
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	5e-15
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	6e-15
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-15
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-15
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-14
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-06
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	1e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-14
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-14
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-13
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-07
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	1e-13
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	1e-13
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	3e-13
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	3e-13
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	3e-13
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	4e-13
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	9e-13
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	2e-12
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	2e-12
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-12
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-10
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-07
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	3e-12
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	3e-12
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	3e-12
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	4e-12
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	4e-12
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	4e-12
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	5e-12
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	5e-12
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	5e-12
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	6e-12
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	6e-12
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	7e-12
3uqc_A	286	Probable conserved transmembrane protein; structur	9e-12
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	1e-11
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	1e-11
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-11
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-06
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	1e-11
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	2e-11
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	2e-11
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-11
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-10
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	8e-05
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	3e-11
4aoj_A	329	High affinity nerve growth factor receptor; transf	3e-11
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	4e-11
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	4e-11
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	4e-11
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	5e-11
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	5e-11
3pls_A	298	Macrophage-stimulating protein receptor; protein k	6e-11
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	6e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-05
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	8e-11
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	8e-11
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	9e-11
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	1e-10
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	1e-10
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	1e-10
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	1e-10
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	1e-10
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	2e-10
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	2e-10
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	2e-10
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	2e-10
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-10
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	6e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-05
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	3e-10
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	3e-10
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	3e-10
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	3e-10
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	4e-10
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	4e-10
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-10
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-05
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	4e-10
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	5e-10
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	5e-10
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	5e-10
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	5e-10
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	5e-10
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	5e-10
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	6e-10
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	6e-10
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	7e-10
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-10
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-07
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	7e-10
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	8e-10
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	8e-10
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	8e-10
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	1e-09
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	1e-09
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	1e-09
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	1e-09
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	1e-09
2a19_B	284	Interferon-induced, double-stranded RNA-activated	1e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-06
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	2e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	7e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	8e-07
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	3e-09
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	3e-09
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	3e-09
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	3e-09
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	4e-09
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	5e-09
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	6e-09
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	6e-09
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	7e-09
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	8e-09
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	8e-09
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	9e-09
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	9e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-05
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	1e-08
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	1e-08
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	1e-08
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	1e-08
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	2e-08
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	2e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	2e-08
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	2e-08
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	3e-08
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	3e-08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-08
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	4e-08
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	4e-08
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-08
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-04
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	4e-08
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-08
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	5e-08
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	5e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	6e-08
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	6e-08
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	7e-08
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	7e-08
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	8e-08
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	9e-08
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-07
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-07
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	1e-07
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	1e-07
3aln_A	327	Dual specificity mitogen-activated protein kinase;	1e-07
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	2e-07
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	2e-07
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	2e-07
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	2e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-05
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	3e-07
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	3e-07
3niz_A	311	Rhodanese family protein; structural genomics, str	3e-07
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	4e-07
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	4e-07
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	4e-07
3o0g_A	292	Cell division protein kinase 5; kinase activator c	4e-07
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	4e-07
3bhy_A	283	Death-associated protein kinase 3; death associate	5e-07
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	5e-07
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	6e-07
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	7e-07
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	7e-07
3fme_A	290	Dual specificity mitogen-activated protein kinase;	7e-07
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	8e-07
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	8e-07
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	9e-07
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	1e-06
3an0_A	340	Dual specificity mitogen-activated protein kinase;	1e-06
2dyl_A	318	Dual specificity mitogen-activated protein kinase	1e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-06
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	1e-06
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	1e-06
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	1e-06
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	2e-06
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	3e-06
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	3e-06
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	3e-06
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	3e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	9e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-04
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	7e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	8e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	6e-04
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	1e-05
3rp9_A	458	Mitogen-activated protein kinase; structural genom	1e-05
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	1e-05
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	2e-05
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	2e-05
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	3e-05
3ork_A	311	Serine/threonine protein kinase; structural genomi	3e-05
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	3e-05
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	4e-05
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	5e-05
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	6e-05
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	6e-05
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	7e-05
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	8e-05
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	2e-04
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	3e-04
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	4e-04
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	4e-04
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	5e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	5e-04
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	5e-04
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	5e-04
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	5e-04
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	6e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	7e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  434 bits (1119), Expect = e-142
 Identities = 145/501 (28%), Positives = 225/501 (44%), Gaps = 21/501 (4%)

Query: 54  TNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQI-GNLTKLSYISLDSNQL 112
             +++ +    G +          L +L L+ N F G IP  + G    L+ + L  N  
Sbjct: 250 KLLNISSNQFVGPI---PPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF 306

Query: 113 SGKIPAEVGLLTHLKVLSFQFNELDGSIPPEV-CQLSSIEELFLYSNHLNGSLPPFLGNL 171
            G +P   G  + L+ L+   N   G +P +   ++  ++ L L  N  +G LP  L NL
Sbjct: 307 YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL 366

Query: 172 S-NIVRLYINNNSLSGSILTNIGN--LKFLFELDLSF------LPLSVGNLTNLKSLGLM 222
           S +++ L +++N+ SG IL N+       L EL L        +P ++ N + L SL L 
Sbjct: 367 SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS 426

Query: 223 DNHLSGSIPPSFGN-SMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESL 281
            N+LSG+IP S G+ S L  L L  N   G +P  +     LE  I+  N   G IP  L
Sbjct: 427 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 486

Query: 282 RNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVS 341
            NCT+L  + L+ N LTG I + +G   NL  + LS N+F G I +  G C  L  L+++
Sbjct: 487 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546

Query: 342 MNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGN--QLTGRLPT 399
            N   G IP  +   S      ++ N I G+    +       +    GN  +  G    
Sbjct: 547 TNLFNGTIPAAMFKQS----GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSE 602

Query: 400 EIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELD 459
           ++  L      + ++  +      +  N   + +L +S N     +PKE+  +  L  L+
Sbjct: 603 QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILN 662

Query: 460 ASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPN 519
             HN   G IP ++  L+ L  L+LS N L G IP     +  L+ ID+S+N L GP+P 
Sbjct: 663 LGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722

Query: 520 STAFRNAPVEALEGNKELCGG 540
              F   P      N  LCG 
Sbjct: 723 MGQFETFPPAKFLNNPGLCGY 743

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  411 bits (1059), Expect = e-133
 Identities = 142/503 (28%), Positives = 231/503 (45%), Gaps = 40/503 (7%)

Query: 52  RVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQ 111
            + ++++    +SG +     S    L  LD+S N F   IP  +G+ + L ++ +  N+
Sbjct: 179 ELKHLAISGNKISGDV---DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNK 234

Query: 112 LSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFL-GN 170
           LSG     +   T LK+L+   N+  G IPP    L S++ L L  N   G +P FL G 
Sbjct: 235 LSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGA 292

Query: 171 LSNIVRLYINNNSLSGSILTNIGNLKFLFELDLS-------FLPLSVGNLTNLKSLGLMD 223
              +  L ++ N   G++    G+   L  L LS           ++  +  LK L L  
Sbjct: 293 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 352

Query: 224 NHLSGSIPPSFGN--SMLTWLTLSGNHFTGYLPHNICRGGL--LEAFIVSENHFQGTIPE 279
           N  SG +P S  N  + L  L LS N+F+G +  N+C+     L+   +  N F G IP 
Sbjct: 353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412

Query: 280 SLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLN 339
           +L NC+ L+ + L+ N L+G I  +LG    L  + L  N   GEI         L TL 
Sbjct: 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472

Query: 340 VSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPT 399
           +  N++TG IP  + N + L  + LS N + GEIPK +G+L +L  L L  N  +G +P 
Sbjct: 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532

Query: 400 EIGSLIELEYLDFSANKFNNSVPESLGNL----------------------LKLHYLGLS 437
           E+G    L +LD + N FN ++P ++                          K  +   +
Sbjct: 533 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 592

Query: 438 NNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCF 497
             +F     ++L +L   +  + +  ++GG       +  S+  L++S+N LSG IP   
Sbjct: 593 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 652

Query: 498 EGMHGLSIIDISDNQLQGPVPNS 520
             M  L I+++  N + G +P+ 
Sbjct: 653 GSMPYLFILNLGHNDISGSIPDE 675

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  406 bits (1047), Expect = e-132
 Identities = 169/585 (28%), Positives = 256/585 (43%), Gaps = 82/585 (14%)

Query: 1   SNEEADALLKWKASLQSHNQSLLPSWTNASTNVSSKISPCAWYGISCNDAGRVTNIS--- 57
              E   L+ +K  L   +++LLP W++         +PC + G++C D  +VT+I    
Sbjct: 10  LYREIHQLISFKDVL--PDKNLLPDWSSNK-------NPCTFDGVTCRD-DKVTSIDLSS 59

Query: 58  ------------------------LRNTGLSGTLRDF----------------------- 70
                                   L N+ ++G++  F                       
Sbjct: 60  KPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTL 119

Query: 71  -SFSSFPQLVHLDLSLNGFFGTIP-SQIGNLTKLSYISLDSNQLSGKIPAEV---GLLTH 125
            S  S   L  L++S N        S    L  L  + L +N +SG              
Sbjct: 120 TSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE 179

Query: 126 LKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLS 185
           LK L+   N++ G +   V +  ++E L + SN+ +  +P FLG+ S +  L I+ N LS
Sbjct: 180 LKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLS 236

Query: 186 GSILTNIGNLKFLFELDLSF----LPLSVGNLTNLKSLGLMDNHLSGSIPPSFGN--SML 239
           G     I     L  L++S      P+    L +L+ L L +N  +G IP         L
Sbjct: 237 GDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTL 296

Query: 240 TWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIP-ESLRNCTSLIRVRLNGNNLT 298
           T L LSGNHF G +P       LLE+  +S N+F G +P ++L     L  + L+ N  +
Sbjct: 297 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356

Query: 299 GNISEALG-LYPNLTFIDLSRNNFYGEISSNWGKCPK--LGTLNVSMNNITGGIPREIGN 355
           G + E+L  L  +L  +DLS NNF G I  N  + PK  L  L +  N  TG IP  + N
Sbjct: 357 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 416

Query: 356 MSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSAN 415
            S+L +L LS N++ G IP  LG L+ L  L L  N L G +P E+  +  LE L    N
Sbjct: 417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476

Query: 416 KFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICS 475
                +P  L N   L+++ LSNN+   E+PK + +L  L+ L  S+N F G IP ++  
Sbjct: 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 536

Query: 476 LKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNS 520
            +SL  L+L+ N  +G IP             I+ N + G     
Sbjct: 537 CRSLIWLDLNTNLFNGTIPAAM----FKQSGKIAANFIAGKRYVY 577

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 66.1 bits (162), Expect = 3e-11
 Identities = 23/103 (22%), Positives = 36/103 (34%), Gaps = 3/103 (2%)

Query: 424 SLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLN 483
               +  +       N     +   L  L  L  L  S++   G +        SL  L+
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLD 106

Query: 484 LSHNNLSGLIPNCFE--GMHGLSIIDISDNQLQGPVPNSTAFR 524
           LS N+LSG +          GL  +++S N L  P   S   +
Sbjct: 107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK 149

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.4 bits (129), Expect = 2e-07
 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 1/74 (1%)

Query: 452 LVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDN 511
           +  +       N+    +   + SL  LE L LS+++++G +   F+    L+ +D+S N
Sbjct: 52  VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRN 110

Query: 512 QLQGPVPNSTAFRN 525
            L GPV   T+  +
Sbjct: 111 SLSGPVTTLTSLGS 124

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  276 bits (708), Expect = 1e-83
 Identities = 84/612 (13%), Positives = 162/612 (26%), Gaps = 131/612 (21%)

Query: 4   EADALLKWKASLQSHNQSLLPSWTNASTNVSSKISPCAWY---GISCNDAGRVTNIS--- 57
           +  AL +   +L   N S     T    N +       W    G+S N  GRVT +S   
Sbjct: 31  DYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEG 90

Query: 58  --------------------------------------------------LRNTGLSGTL 67
                                                             +R       +
Sbjct: 91  FGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFV 150

Query: 68  RDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLK 127
                  F  L+   ++ +    +I        K + I   SN ++  +   V  LT L+
Sbjct: 151 DYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLR 209

Query: 128 VLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGS 187
                 +        E  +  +             +      NL ++  + + N      
Sbjct: 210 QFYMGNSPFVAENICEAWENEN-----SEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK 264

Query: 188 ILTNIGNLKFLFELDLSF--------------LPLSVGNLTNLKSLGLMDNHL-SGSIPP 232
           + T +  L  +  ++++                         ++ + +  N+L +  +  
Sbjct: 265 LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVET 324

Query: 233 SFGN-SMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVR 291
           S      L  L    N   G                            +  +   L  + 
Sbjct: 325 SLQKMKKLGMLECLYNQLEG-------------------------KLPAFGSEIKLASLN 359

Query: 292 LNGNNLTGNISEALGLYPNLTFIDLSRNNFYG-EISSNWGKCPKLGTLNVSMNNITG--- 347
           L  N +T   +   G    +  +  + N         +      +  ++ S N I     
Sbjct: 360 LAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDG 419

Query: 348 ----GIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTG-------R 396
                +         + +++LS N I     +     + L+ + L GN LT         
Sbjct: 420 KNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKD 479

Query: 397 LPTEIGSLIELEYLDFSANKFNNSVPESL--GNLLKLHYLGLSNNQFVLELPKELEKLVQ 454
                 +   L  +D   NK    + +      L  L  + LS N F  + P +      
Sbjct: 480 ENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFS-KFPTQPLNSST 537

Query: 455 LSELDASHNL------FGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDI 508
           L      +           E P  I    SL +L +  N++  +          +S++DI
Sbjct: 538 LKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITP---NISVLDI 594

Query: 509 SDNQLQGPVPNS 520
            DN       + 
Sbjct: 595 KDNPNISIDLSY 606

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  245 bits (627), Expect = 6e-72
 Identities = 68/470 (14%), Positives = 149/470 (31%), Gaps = 76/470 (16%)

Query: 54  TNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLS 113
               + N+           +      + +      + T   +  NL  L+ + + +    
Sbjct: 209 RQFYMGNSPFVA------ENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNL 262

Query: 114 GKIPAEVGLLTHLKVLSFQFNEL--------DGSIPPEVCQLSSIEELFLYSNHL-NGSL 164
            K+P  +  L  +++++   N          D     +      I+ +++  N+L    +
Sbjct: 263 TKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPV 322

Query: 165 PPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSF-----LPLSV-GNLTNLKS 218
              L  +  +  L    N L G +    G+   L  L+L++     +P +  G    +++
Sbjct: 323 ETSLQKMKKLGMLECLYNQLEGKL-PAFGSEIKLASLNLAYNQITEIPANFCGFTEQVEN 381

Query: 219 LGLMDNHLSGSIPPSFGN---SMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQG 275
           L    N L   IP  F     S+++ +  S N        N                   
Sbjct: 382 LSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNF-----------------D 423

Query: 276 TIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNF-------YGEISSN 328
            +  +     ++  + L+ N ++    E       L+ I+L  N           + + N
Sbjct: 424 PLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENEN 483

Query: 329 WGKCPKLGTLNVSMNNITGGIPREI--GNMSQLQALDLSLNHIVGEIPKELGKLNSLTKL 386
           +     L ++++  N +T  +  +     +  L  +DLS N    + P +    ++L   
Sbjct: 484 FKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSF-SKFPTQPLNSSTLKGF 541

Query: 387 ILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELP 446
            +R                     D   N+     PE +     L  L + +N    ++ 
Sbjct: 542 GIRNQ------------------RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVN 582

Query: 447 KELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNC 496
           +++     +S LD   N         +C         L ++     I  C
Sbjct: 583 EKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQD-IRGC 629

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  270 bits (693), Expect = 5e-81
 Identities = 92/497 (18%), Positives = 166/497 (33%), Gaps = 32/497 (6%)

Query: 52  RVTNISLRNTGLSG-TLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSN 110
            +  + L N  +      +    +   L  L+LS N      P     + +L  + L++ 
Sbjct: 146 NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNV 205

Query: 111 QLSGKIPAEVGL---LTHLKVLSFQFNELDGSIPP--EVCQLSSIEELFLYSNHLNGSLP 165
           QL   +  ++ L    T ++ LS   ++L  +        + +++  L L  N+LN    
Sbjct: 206 QLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN 265

Query: 166 PFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNH 225
                L  +   ++  N++      ++  L  +  L+L           +     +    
Sbjct: 266 DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR---------SFTKQSISLAS 316

Query: 226 LSGSIPPSFGN-SMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGT--IPESLR 282
           L      SF     L  L +  N   G   +       L+   +S +         E+  
Sbjct: 317 LPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFV 376

Query: 283 NC--TSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSN-WGKCPKLGTLN 339
           +   + L  + L  N ++   S+A     +L  +DL  N    E++   W     +  + 
Sbjct: 377 SLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIY 436

Query: 340 VSMNNITGGIPREIGNMSQLQALDLSLNHI--VGEIPKELGKLNSLTKLILRGNQLTGRL 397
           +S N            +  LQ L L    +  V   P     L +LT L L  N +    
Sbjct: 437 LSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIN 496

Query: 398 PTEIGSLIELEYLDFSANK--------FNNSVPESLGNLLKLHYLGLSNNQFVLELPKEL 449
              +  L +LE LD   N                 L  L  LH L L +N F     +  
Sbjct: 497 DDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF 556

Query: 450 EKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFE-GMHGLSIIDI 508
           + L +L  +D   N           +  SL+ LNL  N ++ +    F      L+ +D+
Sbjct: 557 KDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDM 616

Query: 509 SDNQLQGPVPNSTAFRN 525
             N       +   F N
Sbjct: 617 RFNPFDCTCESIAWFVN 633

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  266 bits (682), Expect = 2e-79
 Identities = 103/483 (21%), Positives = 180/483 (37%), Gaps = 30/483 (6%)

Query: 67  LRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHL 126
           L          +  L+L+ N       +     ++L+ + +  N +S   P     L  L
Sbjct: 16  LTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPML 75

Query: 127 KVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSG 186
           KVL+ Q NEL           +++ EL L SN +            N++ L +++N LS 
Sbjct: 76  KVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 135

Query: 187 SILTNIGNLKFLFELDLSF--------LPLSVGNLTNLKSLGLMDNHLSGSIPPSFGN-S 237
           + L     L+ L EL LS           L +   ++LK L L  N +    P  F    
Sbjct: 136 TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIG 195

Query: 238 MLTWLTLSGNHFTGYLPHNICRGGL---LEAFIVSENHFQGTIPESLRNC--TSLIRVRL 292
            L  L L+       L   +C       +    +S +    T   +      T+L  + L
Sbjct: 196 RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255

Query: 293 NGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLN---------VSMN 343
           + NNL    +++    P L +  L  NN     S +      +  LN         +S+ 
Sbjct: 256 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLA 315

Query: 344 NITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIG- 402
           ++          +  L+ L++  N I G        L +L  L L  +  + R  T    
Sbjct: 316 SLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETF 375

Query: 403 ---SLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELP-KELEKLVQLSEL 458
              +   L  L+ + NK +    ++   L  L  L L  N+   EL  +E   L  + E+
Sbjct: 376 VSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEI 435

Query: 459 DASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGL--IPNCFEGMHGLSIIDISDNQLQGP 516
             S+N +          + SL++L L    L  +   P+ F+ +  L+I+D+S+N +   
Sbjct: 436 YLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANI 495

Query: 517 VPN 519
             +
Sbjct: 496 NDD 498

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  227 bits (581), Expect = 4e-65
 Identities = 104/513 (20%), Positives = 166/513 (32%), Gaps = 48/513 (9%)

Query: 44  GISCNDAGRVTNISLRNTGLSG----TLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIG-- 97
            +   +     N SL+   LS           F +  +L  L L+      ++  ++   
Sbjct: 159 ALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLE 218

Query: 98  -NLTKLSYISLDSNQLSGKIPAEVGLL--THLKVLSFQFNELDGSIPPEVCQLSSIEELF 154
              T +  +SL ++QLS         L  T+L +L   +N L+         L  +E  F
Sbjct: 219 LANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFF 278

Query: 155 LYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTN---------IGNLKFLFELDLS- 204
           L  N++       L  L N+  L +  +    SI               LK L  L++  
Sbjct: 279 LEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMED 338

Query: 205 -----FLPLSVGNLTNLKSLGLMDNHLSGSIPP-----SFGNSMLTWLTLSGNHFTGYLP 254
                        L NLK L L ++  S          S  +S L  L L+ N  +    
Sbjct: 339 NDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES 398

Query: 255 HNICRGGLLEAFIVSENHFQGTIP-ESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTF 313
                 G LE   +  N     +  +  R   ++  + L+ N        +  L P+L  
Sbjct: 399 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQR 458

Query: 314 IDLSRNNFYG--EISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHI-- 369
           + L R          S +     L  L++S NNI       +  + +L+ LDL  N++  
Sbjct: 459 LMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLAR 518

Query: 370 ------VGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPE 423
                  G     L  L+ L  L L  N            L EL+ +D   N  N     
Sbjct: 519 LWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPAS 578

Query: 424 SLGNLLKLHYLGLSNNQFVLELPKELEK-LVQLSELDASHNLFGGEIPFQICSLKSLEKL 482
              N + L  L L  N       K        L+ELD   N F             +  +
Sbjct: 579 VFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESI---AWFVNWI 635

Query: 483 NLSHNNLSGLIPNCF----EGMHGLSIIDISDN 511
           N +H N+  L  +         HG  +     +
Sbjct: 636 NETHTNIPELSSHYLCNTPPHYHGFPVRLFDTS 668

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  211 bits (540), Expect = 2e-59
 Identities = 82/415 (19%), Positives = 138/415 (33%), Gaps = 44/415 (10%)

Query: 126 LKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLS 185
            +V      +L   +P ++   ++I  L L  N L           S +  L +  N++S
Sbjct: 6   HEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 62

Query: 186 GSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGN-SMLTWLTL 244
                                P     L  LK L L  N LS     +F   + LT L L
Sbjct: 63  KLE------------------PELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104

Query: 245 SGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEA 304
             N       +   +   L    +S N    T   +     +L  + L+ N +    SE 
Sbjct: 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEE 164

Query: 305 LGLYPN--LTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIG---NMSQL 359
           L ++ N  L  ++LS N         +    +L  L ++   +   +  ++      + +
Sbjct: 165 LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSI 224

Query: 360 QALDLSLNHIVGEIPKELGKLN--SLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKF 417
           + L LS + +          L   +LT L L  N L          L +LEY     N  
Sbjct: 225 RNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 284

Query: 418 NNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLK 477
            +    SL  L  + YL L  +                ++   S         F    LK
Sbjct: 285 QHLFSHSLHGLFNVRYLNLKRS---------------FTKQSISLASLPKIDDFSFQWLK 329

Query: 478 SLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNSTAFRNAPVEALE 532
            LE LN+  N++ G+  N F G+  L  + +S++        +  F +     L 
Sbjct: 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLH 384

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  116 bits (292), Expect = 3e-27
 Identities = 39/168 (23%), Positives = 59/168 (35%), Gaps = 3/168 (1%)

Query: 358 QLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKF 417
             +  D S   +  ++P +L    ++T L L  NQL            +L  LD   N  
Sbjct: 5   SHEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 418 NNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLK 477
           +   PE    L  L  L L +N+      K       L+EL    N             K
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121

Query: 478 SLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNSTAFRN 525
           +L  L+LSHN LS         +  L  + +S+N++Q           
Sbjct: 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFA 169

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 75.8 bits (187), Expect = 2e-14
 Identities = 37/213 (17%), Positives = 68/213 (31%), Gaps = 26/213 (12%)

Query: 54  TNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLN--------GFFGTIPSQIGNLTKLSYI 105
           T + L N  ++  + D       +L  LDL  N           G     +  L+ L  +
Sbjct: 483 TILDLSNNNIAN-INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL 541

Query: 106 SLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLP 165
           +L+SN            L  LK++    N L+           S++ L L  N +   + 
Sbjct: 542 NLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS-VE 600

Query: 166 P--FLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMD 223
              F     N+  L +  N    +  +    + ++             N T+     L  
Sbjct: 601 KKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWI-------------NETHTNIPELSS 647

Query: 224 NHLSGSIPPSFGNSMLTWLTLSGNHFTG-YLPH 255
           ++L  + P   G  +  + T S       +  H
Sbjct: 648 HYLCNTPPHYHGFPVRLFDTSSCKDSAHHHHHH 680

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  247 bits (633), Expect = 2e-76
 Identities = 87/372 (23%), Positives = 144/372 (38%), Gaps = 79/372 (21%)

Query: 1   SNEEADALLKWKASLQSHNQSLLPSWTNASTNVSSKISPCAWYGISCNDAG---RVTNIS 57
           + ++  ALL+ K  L   N + L SW       ++      W G+ C+      RV N+ 
Sbjct: 4   NPQDKQALLQIKKDL--GNPTTLSSWLP-----TTDCCNRTWLGVLCDTDTQTYRVNNLD 56

Query: 58  LRNTGLSGTLR-DFSFSSFPQLVHLDLS-LNGFFGTIPSQIGNLTKLSYISLDSNQLSGK 115
           L    L        S ++ P L  L +  +N   G IP  I  LT+L Y+ +    +SG 
Sbjct: 57  LSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA 116

Query: 116 IPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIV 175
           IP  +  +  L  L F +N L G++PP +  L ++  +    N ++G++P   G+ S + 
Sbjct: 117 IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF 176

Query: 176 RLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFG 235
                                    + +S                   N L+G IPP+F 
Sbjct: 177 TS-----------------------MTIS------------------RNRLTGKIPPTFA 195

Query: 236 NSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGN 295
           N  L ++ LS N                           G       +  +  ++ L  N
Sbjct: 196 NLNLAFVDLSRNMLE------------------------GDASVLFGSDKNTQKIHLAKN 231

Query: 296 NLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGN 355
           +L  ++ + +GL  NL  +DL  N  YG +     +   L +LNVS NN+ G IP + GN
Sbjct: 232 SLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGN 289

Query: 356 MSQLQALDLSLN 367
           + +      + N
Sbjct: 290 LQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  222 bits (568), Expect = 5e-67
 Identities = 72/346 (20%), Positives = 118/346 (34%), Gaps = 79/346 (22%)

Query: 206 LPLSVGNLTNLKSLGLMDNHLSGS--IPPSFGN-SMLTWLTLSGNHFTGYLPHNICRGGL 262
           L  +      + +L L   +L     IP S  N   L +L + G                
Sbjct: 42  LCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGI--------------- 86

Query: 263 LEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFY 322
                   N+  G IP ++   T L  + +   N++G I + L     L  +D S N   
Sbjct: 87  --------NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS 138

Query: 323 GEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQL-QALDLSLNHIVGEIPKELGKLN 381
           G +  +    P L  +    N I+G IP   G+ S+L  ++ +S N + G+IP     LN
Sbjct: 139 GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN 198

Query: 382 SLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQF 441
            L  + L  N L G      GS    + +  + N                          
Sbjct: 199 -LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA----------------------- 234

Query: 442 VLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMH 501
                                     ++  ++   K+L  L+L +N + G +P     + 
Sbjct: 235 -------------------------FDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268

Query: 502 GLSIIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGVKGMQPC 547
            L  +++S N L G +P     +   V A   NK LCG    +  C
Sbjct: 269 FLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGS--PLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  155 bits (395), Expect = 2e-42
 Identities = 51/189 (26%), Positives = 77/189 (40%), Gaps = 5/189 (2%)

Query: 336 GTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGE--IPKELGKLNSLTKLILRG-NQ 392
            T +       G +        ++  LDLS  ++     IP  L  L  L  L + G N 
Sbjct: 29  PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN 88

Query: 393 LTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKL 452
           L G +P  I  L +L YL  +    + ++P+ L  +  L  L  S N     LP  +  L
Sbjct: 89  LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148

Query: 453 VQLSELDASHNLFGGEIPFQICSLKSL-EKLNLSHNNLSGLIPNCFEGMHGLSIIDISDN 511
             L  +    N   G IP    S   L   + +S N L+G IP  F  ++ L+ +D+S N
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207

Query: 512 QLQGPVPNS 520
            L+G     
Sbjct: 208 MLEGDASVL 216

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  136 bits (344), Expect = 1e-35
 Identities = 46/180 (25%), Positives = 80/180 (44%), Gaps = 8/180 (4%)

Query: 349 IPREIGNMSQLQ----ALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGR--LPTEIG 402
           I +++GN + L       D      +G +     +   +  L L G  L     +P+ + 
Sbjct: 14  IKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLA 73

Query: 403 SLIELEYLDFS-ANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDAS 461
           +L  L +L     N     +P ++  L +LHYL +++      +P  L ++  L  LD S
Sbjct: 74  NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS 133

Query: 462 HNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLS-IIDISDNQLQGPVPNS 520
           +N   G +P  I SL +L  +    N +SG IP+ +     L   + IS N+L G +P +
Sbjct: 134 YNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 43.3 bits (103), Expect = 1e-04
 Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 7/85 (8%)

Query: 443 LELPKELEKLVQLS----ELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSG--LIPNC 496
           L++ K+L     LS      D  +  + G +         +  L+LS  NL     IP+ 
Sbjct: 12  LQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSS 71

Query: 497 FEGMHGLSIIDISD-NQLQGPVPNS 520
              +  L+ + I   N L GP+P +
Sbjct: 72  LANLPYLNFLYIGGINNLVGPIPPA 96

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  252 bits (646), Expect = 6e-75
 Identities = 101/493 (20%), Positives = 172/493 (34%), Gaps = 34/493 (6%)

Query: 53  VTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQL 112
             N+ L    L   L  +SF SFP+L  LDLS             +L+ LS + L  N +
Sbjct: 30  TKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 113 SGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNG-SLPPFLGNL 171
                     L+ L+ L      L       +  L +++EL +  N +    LP +  NL
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148

Query: 172 SNIVRLYINNNSLSGSILTNIGNLK----FLFELDLS-----FLPLSVGNLTNLKSLGLM 222
           +N+  L +++N +     T++  L         LDLS     F+         L  L L 
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLR 208

Query: 223 DNHLSGSIPPSFGN--SMLTWLTLSGNHFTGYLP---------HNICRGGLLEAFIVSEN 271
           +N  S ++  +     + L    L    F                +C   + E  +   +
Sbjct: 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 268

Query: 272 HFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGK 331
           ++   I +     T++    L    +      +         ++L    F    +     
Sbjct: 269 YYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF--GWQHLELVNCKFGQFPTLKLKS 326

Query: 332 CPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHI--VGEIPKELGKLNSLTKLILR 389
             +L     +  +  GG      ++  L+ LDLS N +   G   +      SL  L L 
Sbjct: 327 LKRL-----TFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381

Query: 390 GNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPES-LGNLLKLHYLGLSNNQFVLELPKE 448
            N +   + +    L +LE+LDF  +        S   +L  L YL +S+    +     
Sbjct: 382 FNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 440

Query: 449 LEKLVQLSELDASHNLFGGEI-PFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIID 507
              L  L  L  + N F     P     L++L  L+LS   L  L P  F  +  L +++
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500

Query: 508 ISDNQLQGPVPNS 520
           +S N         
Sbjct: 501 MSHNNFFSLDTFP 513

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  249 bits (638), Expect = 7e-74
 Identities = 96/477 (20%), Positives = 165/477 (34%), Gaps = 36/477 (7%)

Query: 66  TLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQL-SGKIPAEVGLLT 124
           +L   +FS    L  L              IG+L  L  +++  N + S K+P     LT
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 125 HLKVLSFQFNELDGSIPPEVCQLSSIE----ELFLYSNHLNGSLPPFLGNLSNIVRLYIN 180
           +L+ L    N++      ++  L  +      L L  N +N  + P       + +L + 
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLR 208

Query: 181 NNSLSGSILTN-IGNLKFLFELDLS---------FLPLSVGNLTNLKSLGLMDNHLS--- 227
           NN  S +++   I  L  L    L                  L  L +L + +  L+   
Sbjct: 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 268

Query: 228 ---GSIPPSFGN-SMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRN 283
                I   F   + ++  +L           +   G   +   +    F       L++
Sbjct: 269 YYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFG--WQHLELVNCKFGQFPTLKLKS 326

Query: 284 CTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRN--NFYGEISSNWGKCPKLGTLNVS 341
              L        +  G  + +    P+L F+DLSRN  +F G  S +      L  L++S
Sbjct: 327 LKRL-----TFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381

Query: 342 MNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKE-LGKLNSLTKLILRGNQLTGRLPTE 400
            N +   +      + QL+ LD   +++           L +L  L +            
Sbjct: 382 FNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 440

Query: 401 IGSLIELEYLDFSANKFNNSV-PESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELD 459
              L  LE L  + N F  +  P+    L  L +L LS  Q     P     L  L  L+
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500

Query: 460 ASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHG-LSIIDISDNQLQG 515
            SHN F     F    L SL+ L+ S N++        +     L+ ++++ N    
Sbjct: 501 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 557

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  182 bits (464), Expect = 1e-49
 Identities = 85/465 (18%), Positives = 147/465 (31%), Gaps = 74/465 (15%)

Query: 52  RVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQ 111
           R+  ++LRN   S  +          L    L L  F                       
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN------------------EGN 242

Query: 112 LSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNL 171
           L     + +  L +L +  F+   LD  +                       +      L
Sbjct: 243 LEKFDKSALEGLCNLTIEEFRLAYLDYYL---------------------DDIIDLFNCL 281

Query: 172 SNIVRLYINNNSLSGSI-LTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSI 230
           +N+    + + ++      +     + L  ++  F       L +LK L        G  
Sbjct: 282 TNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTF--TSNKGGN 339

Query: 231 PPSFGN-SMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIR 289
             S  +   L +L LS N  +                      F+G   +S    TSL  
Sbjct: 340 AFSEVDLPSLEFLDLSRNGLS----------------------FKGCCSQSDFGTTSLKY 377

Query: 290 VRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEIS-SNWGKCPKLGTLNVSMNNITGG 348
           + L+ N +    S  LGL   L  +D   +N       S +     L  L++S  +    
Sbjct: 378 LDLSFNGVITMSSNFLGL-EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436

Query: 349 IPREIGNMSQLQALDLSLNHIVGEIPKE-LGKLNSLTKLILRGNQLTGRLPTEIGSLIEL 407
                  +S L+ L ++ N        +   +L +LT L L   QL    PT   SL  L
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496

Query: 408 EYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLV-QLSELDASHNLFG 466
           + L+ S N F +        L  L  L  S N  +    +EL+     L+ L+ + N F 
Sbjct: 497 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556

Query: 467 GEIPFQ--ICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDIS 509
                Q  +  +K   +L +    +    P       G+ ++ ++
Sbjct: 557 CTCEHQSFLQWIKDQRQLLVEVERMECATP---SDKQGMPVLSLN 598

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  140 bits (354), Expect = 5e-35
 Identities = 58/234 (24%), Positives = 90/234 (38%), Gaps = 10/234 (4%)

Query: 288 IRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITG 347
           I  +    N          L  +   +DLS N      S ++   P+L  L++S   I  
Sbjct: 10  ITYQCMELNFYKIPD---NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66

Query: 348 GIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIEL 407
                  ++S L  L L+ N I          L+SL KL+     L       IG L  L
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126

Query: 408 EYLDFSANKFNN-SVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLS----ELDASH 462
           + L+ + N   +  +PE   NL  L +L LS+N+       +L  L Q+      LD S 
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 463 NLFGGEIPFQICSLKSLEKLNLSHNNLSG-LIPNCFEGMHGLSIIDISDNQLQG 515
           N     I         L KL L +N  S  ++  C +G+ GL +  +   + + 
Sbjct: 187 NPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  139 bits (351), Expect = 1e-34
 Identities = 51/218 (23%), Positives = 83/218 (38%), Gaps = 10/218 (4%)

Query: 309 PNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNH 368
           PN+T+      NFY +I  N         L++S N +         +  +LQ LDLS   
Sbjct: 8   PNITY-QCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE 63

Query: 369 IVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNL 428
           I          L+ L+ LIL GN +          L  L+ L        +     +G+L
Sbjct: 64  IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123

Query: 429 LKLHYLGLSNNQF-VLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLE----KLN 483
             L  L +++N     +LP+    L  L  LD S N         +  L  +      L+
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183

Query: 484 LSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNST 521
           LS N ++ + P  F+ +  L  + + +N     V  + 
Sbjct: 184 LSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTC 220

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  110 bits (278), Expect = 1e-25
 Identities = 41/167 (24%), Positives = 63/167 (37%), Gaps = 5/167 (2%)

Query: 355 NMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSA 414
            +  +    + LN    +IP  L    S   L L  N L         S  EL+ LD S 
Sbjct: 6   VVPNITYQCMELNFY--KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSR 61

Query: 415 NKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQIC 474
            +       +  +L  L  L L+ N            L  L +L A          F I 
Sbjct: 62  CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG 121

Query: 475 SLKSLEKLNLSHNNLSGL-IPNCFEGMHGLSIIDISDNQLQGPVPNS 520
            LK+L++LN++HN +    +P  F  +  L  +D+S N++Q      
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  253 bits (648), Expect = 4e-73
 Identities = 93/619 (15%), Positives = 187/619 (30%), Gaps = 95/619 (15%)

Query: 1   SNEEADALLKWKASLQSHNQSLLPSWTNASTNVSS---KISPCAWY---GISCNDAGRVT 54
             ++  AL     +L   N        N + +  +         W    G+  ++ GRVT
Sbjct: 267 YIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVT 326

Query: 55  NISLRNTGLSGTLRDFSFSSFPQLVH-------------------------------LDL 83
            +SL   G  G + D +     +L                                 + +
Sbjct: 327 GLSLAGFGAKGRVPD-AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRM 385

Query: 84  SLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPE 143
                F     ++ NL+ L   +++ N     I  +  +      +    N +   I   
Sbjct: 386 HYKKMFLDYDQRL-NLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRI-TFISKA 443

Query: 144 VCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDL 203
           + +L+ ++ ++  ++             +N      +      +   +  NLK L +++L
Sbjct: 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANS-----DYAKQYENEELSWSNLKDLTDVEL 498

Query: 204 S------FLPLSVGNLTNLKSLGLMDNHLSG---------SIPPSFGN-SMLTWLTLSGN 247
                   LP  + +L  L+SL +  N              +         +    +  N
Sbjct: 499 YNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN 558

Query: 248 HFTGYLPHNICRGGL--LEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEAL 305
           +     P +     +  L       N       E+      L  ++L+ N +     +  
Sbjct: 559 NLEE-FPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIEEIPEDFC 615

Query: 306 GLYPNLTFIDLSRNNFYG-EISSNWGKCPKLGTLNVSMNNITG-----GIPREIGNMSQL 359
                +  +  S N         N      +G+++ S N I           +       
Sbjct: 616 AFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINA 675

Query: 360 QALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLT-------GRLPTEIGSLIELEYLDF 412
             + LS N I     +     + ++ +IL  N +T               +   L  +D 
Sbjct: 676 STVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDL 735

Query: 413 SANKFNNSVPESL--GNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFG---- 466
             NK   S+ +      L  L  + +S N F    P +     QL      H        
Sbjct: 736 RFNKLT-SLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNR 793

Query: 467 --GEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQL-QGPVPNSTAF 523
              + P  I +  SL +L +  N++  +     +    L I+DI+DN      V +   +
Sbjct: 794 ILRQWPTGITTCPSLIQLQIGSNDIRKVDE---KLTPQLYILDIADNPNISIDVTSVCPY 850

Query: 524 RNAPVEALEGNK--ELCGG 540
             A +  L  +K  ++ G 
Sbjct: 851 IEAGMYVLLYDKTQDIRGC 869

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  244 bits (625), Expect = 5e-70
 Identities = 85/576 (14%), Positives = 163/576 (28%), Gaps = 93/576 (16%)

Query: 2   NEEADALLKWKASLQSHNQSLLPSWTNASTNVSSKISPCAW-YGISCNDAGRVTNISLRN 60
            E A+ +  +KA           +W   S  +++ I    W +    +  G    + L N
Sbjct: 262 KETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN 321

Query: 61  TGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEV 120
            G              ++  L L+  G  G +P  IG LT+L  +S  ++  +       
Sbjct: 322 NG--------------RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFG 367

Query: 121 GLLTHLKVLSFQFNELDGSIP-----------------------PEVCQLSSIEELFLYS 157
                  +   + + +                            PE+  +     + L  
Sbjct: 368 DEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKD 427

Query: 158 NHLNG------SLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLS-FLPLSV 210
             +         +   +  L+ +  +Y  N+  +   +                   LS 
Sbjct: 428 TQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSW 487

Query: 211 GNLTNLKSLGLMDNHLSGSIPPSFGN-SMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVS 269
            NL +L  + L +      +P    +   L  L ++ N                      
Sbjct: 488 SNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS---------------AAQ 532

Query: 270 ENHFQGTIPESLRNCTSLIRVRLNGNNLTG-NISEALGLYPNLTFIDLSRNNFYGEISSN 328
                  + +       +    +  NNL     S +L     L  +D   N     + + 
Sbjct: 533 LKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV-RHLEA- 590

Query: 329 WGKCPKLGTLNVSMNNITGGIPREIG-NMSQLQALDLSLNHIVGEIPK--ELGKLNSLTK 385
           +G   KL  L +  N I   IP +      Q++ L  S N +   IP       +  +  
Sbjct: 591 FGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKL-KYIPNIFNAKSVYVMGS 648

Query: 386 LILRGNQLTGRLPTEIGS------LIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNN 439
           +    N++       I         I    +  S N+      E       +  + LSNN
Sbjct: 649 VDFSYNKIGS-EGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN 707

Query: 440 QF-------VLELPKELEKLVQLSELDASHNLFGGEIP--FQICSLKSLEKLNLSHNNLS 490
                    +       +    L+ +D   N     +   F+  +L  L  +++S+N  S
Sbjct: 708 LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKL-TSLSDDFRATTLPYLSNMDVSYNCFS 766

Query: 491 GLIPNCFEGMHGLSIIDI------SDNQLQGPVPNS 520
              P        L    I        N++    P  
Sbjct: 767 S-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG 801

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 98.0 bits (244), Expect = 3e-21
 Identities = 29/261 (11%), Positives = 77/261 (29%), Gaps = 27/261 (10%)

Query: 285 TSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNN 344
           T    V +        I +   L      +D     +Y    +N          N  ++ 
Sbjct: 252 TKDANVPIQLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNF-NKELDM 310

Query: 345 ITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSL 404
                  ++ N  ++  L L+     G +P  +G+L  L  L    +  T          
Sbjct: 311 WGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEE 370

Query: 405 IELEYLDFSANKFNNSVPE-SLGNLLKLHYLGLSNNQF-----VLELPKELEKLVQLSEL 458
           +  +  +   ++      +  L    +L+   L  +       +  + K+    ++ +++
Sbjct: 371 LTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQI 430

Query: 459 DASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGL-------------------IPNCFEG 499
               N     I   I  L  L+ +  +++  +                         +  
Sbjct: 431 GNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSN 489

Query: 500 MHGLSIIDISDNQLQGPVPNS 520
           +  L+ +++ +      +P+ 
Sbjct: 490 LKDLTDVELYNCPNMTQLPDF 510

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  243 bits (623), Expect = 1e-71
 Identities = 94/487 (19%), Positives = 171/487 (35%), Gaps = 21/487 (4%)

Query: 53  VTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQL 112
              +      L  T+++ +FS    L  LDL+    +        +  +L  + L +N L
Sbjct: 35  TECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93

Query: 113 SGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLS 172
                  +     LK L F    +       +    ++E L+L SNH++    P      
Sbjct: 94  IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTE 153

Query: 173 NIVRLYINNNSLSGSILTNIGNLKFLFELDL-------SFLPLSVGNLTNLKSLGLMDNH 225
            +  L   NN++      ++ +L+    L L       + +     +    +SL      
Sbjct: 154 KLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ 213

Query: 226 LSGSIPPSFGNS---MLTWLTLSGNHFTGYLPHNICRGGL--LEAFIVSENHFQGTIPES 280
               I     NS    L   T          P          +E+  + +++F      +
Sbjct: 214 NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNT 273

Query: 281 LRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNV 340
               + L  + L   +L+  +   L     L  + LS N F      +    P L  L++
Sbjct: 274 FHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332

Query: 341 SMNNITGGIPRE-IGNMSQLQALDLSLNHI--VGEIPKELGKLNSLTKLILRGNQLTGRL 397
             N     +    + N+  L+ LDLS + I        +L  L+ L  L L  N+     
Sbjct: 333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLK 392

Query: 398 PTEIGSLIELEYLDFSANKFNNSVPES-LGNLLKLHYLGLSNNQFVLELPKELEKLVQLS 456
                   +LE LD +  +      +S   NL  L  L LS++   +   +  + L  L 
Sbjct: 393 TEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQ 452

Query: 457 ELDASHNLFGGEIPFQ---ICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQL 513
            L+   N F      +   + +L  LE L LS  +LS +  + F  +  ++ +D+S N+L
Sbjct: 453 HLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL 512

Query: 514 QGPVPNS 520
                 +
Sbjct: 513 TSSSIEA 519

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  232 bits (593), Expect = 2e-67
 Identities = 97/469 (20%), Positives = 163/469 (34%), Gaps = 21/469 (4%)

Query: 66  TLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTH 125
            + + + S    L HL     G        + N   L  + L SN +S     +      
Sbjct: 95  FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEK 154

Query: 126 LKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLN-GSLPPFLGNLSNIVRLYINNNSL 184
           LKVL FQ N +      ++  L     L L  N  +   + P   + +    L       
Sbjct: 155 LKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQN 214

Query: 185 SGSILTNIGNLKF--LFELDLSFLPLS--------VGNLTNLKSLGLMDNHLSGSIPPSF 234
              I   + N     L+      +                +++S+ L  ++       +F
Sbjct: 215 LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTF 274

Query: 235 GN-SMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLN 293
              S L  L L+  H +  LP  +     L+  ++S N F+     S  N  SL  + + 
Sbjct: 275 HCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333

Query: 294 GNNLTGNI-SEALGLYPNLTFIDLSRNNFY--GEISSNWGKCPKLGTLNVSMNNITGGIP 350
           GN     + +  L    NL  +DLS ++       +        L +LN+S N       
Sbjct: 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT 393

Query: 351 REIGNMSQLQALDLSLNHIVGEIPKE-LGKLNSLTKLILRGNQLTGRLPTEIGSLIELEY 409
                  QL+ LDL+   +  +  +     L+ L  L L  + L          L  L++
Sbjct: 394 EAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQH 453

Query: 410 LDFSANKF---NNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFG 466
           L+   N F   N     SL  L +L  L LS              L  ++ +D SHN   
Sbjct: 454 LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT 513

Query: 467 GEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQG 515
                 +  LK +  LNL+ N++S ++P+    +     I++  N L  
Sbjct: 514 SSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  230 bits (589), Expect = 8e-67
 Identities = 88/501 (17%), Positives = 161/501 (32%), Gaps = 28/501 (5%)

Query: 46  SCNDAGRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYI 105
              +  +  N           L +   +       L+ S N       +    L  L+++
Sbjct: 9   IEKEVNKTYNCENLG------LNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFL 62

Query: 106 SLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLP 165
            L   Q+             L  L    N L       +    +++ LF     ++    
Sbjct: 63  DLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDF 122

Query: 166 PFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLS------FLPLSVGNLTNLK-- 217
             L N   +  LY+ +N +S   L      + L  LD             + +L      
Sbjct: 123 IPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL 182

Query: 218 SLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGL--LEAFIVSENHFQG 275
           SL L  N ++G  P +F +++   L   G      +   +    +  L      +   + 
Sbjct: 183 SLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDED 242

Query: 276 TIPESLRNC--TSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCP 333
             P         S+  + L  +      S     +  L  +DL+  +   E+ S      
Sbjct: 243 ISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL-SELPSGLVGLS 301

Query: 334 KLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKE-LGKLNSLTKLILRGNQ 392
            L  L +S N           N   L  L +  N    E+    L  L +L +L L  + 
Sbjct: 302 TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD 361

Query: 393 LT--GRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQF-VLELPKEL 449
           +        ++ +L  L+ L+ S N+  +   E+     +L  L L+  +  V +     
Sbjct: 362 IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPF 421

Query: 450 EKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLI---PNCFEGMHGLSII 506
           + L  L  L+ SH+L           L +L+ LNL  N+         N  + +  L I+
Sbjct: 422 QNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEIL 481

Query: 507 DISDNQLQGPVPNSTAFRNAP 527
            +S   L     +  AF +  
Sbjct: 482 VLSFCDLSSIDQH--AFTSLK 500

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  110 bits (276), Expect = 3e-25
 Identities = 47/237 (19%), Positives = 80/237 (33%), Gaps = 12/237 (5%)

Query: 52  RVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLN--GFFGTIPSQIGNLTKLSYISLDS 109
            +T++S++       L      +   L  LDLS +          Q+ NL+ L  ++L  
Sbjct: 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY 385

Query: 110 NQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEV-CQLSSIEELFLYSNHLNGSLPPFL 168
           N+              L++L   F  L           L  ++ L L  + L+ S     
Sbjct: 386 NEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF 445

Query: 169 GNLSNIVRLYINNNSLSGSILTNIG---NLKFLFELDLSFLPLSV------GNLTNLKSL 219
             L  +  L +  N      +        L  L  L LSF  LS        +L  +  +
Sbjct: 446 DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHV 505

Query: 220 GLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGT 276
            L  N L+ S   +  +    +L L+ NH +  LP  +          + +N    T
Sbjct: 506 DLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  106 bits (266), Expect = 5e-24
 Identities = 37/217 (17%), Positives = 68/217 (31%), Gaps = 5/217 (2%)

Query: 337 TLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGR 396
           T N     +   IP  +   +  + L+ S N +         +L +LT L L   Q+   
Sbjct: 16  TYNCENLGLNE-IPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72

Query: 397 LPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLS 456
                 S   L+ L  +AN        +L     L +L              L     L 
Sbjct: 73  HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132

Query: 457 ELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSII--DISDNQLQ 514
            L    N        +    + L+ L+  +N +  L       +   + +  +++ N + 
Sbjct: 133 SLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192

Query: 515 GPVPNSTAFRNAPVEALEGNKELCGGVKGMQPCKVFS 551
           G  P +            G + L    KG++   + S
Sbjct: 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQS 229

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  225 bits (576), Expect = 4e-65
 Identities = 107/511 (20%), Positives = 180/511 (35%), Gaps = 47/511 (9%)

Query: 53  VTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQL 112
             NI L    L   L+ +SFS+F +L  LDLS              L  LS + L  N +
Sbjct: 34  TKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92

Query: 113 SGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNG-SLPPFLGNL 171
               P     LT L+ L     +L       + QL ++++L +  N ++   LP +  NL
Sbjct: 93  QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNL 152

Query: 172 SNIVRLYINNNSLSGSILTNIGNLK----FLFELDLS-----FLPLSVGNLTNLKSLGLM 222
           +N+V + ++ N +    + ++  L+        LD+S     F+         L  L L 
Sbjct: 153 TNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLR 212

Query: 223 DNHLSGSIPPSFGNSM--LTWLTLSGNHFTGYLPHNICRGGLLEAFIV--------SENH 272
            N  S +I  +   ++  L    L    F       I    ++E            +  +
Sbjct: 213 GNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTN 272

Query: 273 FQGTIPESLRNCTSLIRVRLNGNNLTG--NISEALGLY-----------------PNLTF 313
                        ++  + L G ++    ++ +                      P L  
Sbjct: 273 DFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKS 332

Query: 314 IDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPR--EIGNMSQLQALDLSLNHIVG 371
           + L+ N   G IS      P L  L++S N ++            + L+ LDLS N  + 
Sbjct: 333 LTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI- 389

Query: 372 EIPKELGKLNSLTKLILRGNQLTGRLPTE-IGSLIELEYLDFSANKFNNSVPESLGNLLK 430
            +      L  L  L  + + L          SL +L YLD S              L  
Sbjct: 390 IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449

Query: 431 LHYLGLSNNQFVLELPKE-LEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNL 489
           L+ L ++ N F              L+ LD S             +L  L+ LN+SHNNL
Sbjct: 450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 509

Query: 490 SGLIPNCFEGMHGLSIIDISDNQLQGPVPNS 520
             L  + +  ++ LS +D S N+++      
Sbjct: 510 LFLDSSHYNQLYSLSTLDCSFNRIETSKGIL 540

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  208 bits (532), Expect = 7e-59
 Identities = 87/485 (17%), Positives = 157/485 (32%), Gaps = 35/485 (7%)

Query: 54  TNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLS 113
           +N+ L    +       SFS    L +L              IG L  L  +++  N + 
Sbjct: 83  SNLILTGNPIQSFSPG-SFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIH 141

Query: 114 G-KIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLS----SIEELFLYSNHLNGSLPPFL 168
             K+PA    LT+L  +   +N +      ++  L         L +  N ++  +    
Sbjct: 142 SCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQA 200

Query: 169 GNLSNIVRLYINNNSLSGSILTN-IGNLKFLFELDLSFLPLSVGN------------LTN 215
                +  L +  N  S +I+   + NL  L    L                     L +
Sbjct: 201 FQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCD 260

Query: 216 L--KSLGLMDNHLSGSIPPSFGN-SMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENH 272
           +      L   +        F   + ++ ++L+G         ++ +    ++  +    
Sbjct: 261 VTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQ 318

Query: 273 FQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFY--GEISSNWG 330
            +      L    SL    L  N  +  IS      P+L+++DLSRN     G  S +  
Sbjct: 319 LKQFPTLDLPFLKSL---TLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDL 373

Query: 331 KCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKE-LGKLNSLTKLILR 389
               L  L++S N     +      + +LQ LD   + +           L  L  L + 
Sbjct: 374 GTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDIS 432

Query: 390 GNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPES-LGNLLKLHYLGLSNNQFVLELPKE 448
                         L  L  L  + N F ++   +   N   L +L LS  Q        
Sbjct: 433 YTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV 492

Query: 449 LEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDI 508
            + L +L  L+ SHN            L SL  L+ S N +             L+  ++
Sbjct: 493 FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNL 552

Query: 509 SDNQL 513
           ++N +
Sbjct: 553 TNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  200 bits (511), Expect = 6e-56
 Identities = 89/470 (18%), Positives = 159/470 (33%), Gaps = 32/470 (6%)

Query: 75  FPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFN 134
                ++DLS N           N ++L ++ L   ++          L HL  L    N
Sbjct: 31  PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90

Query: 135 ELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSIL-TNIG 193
            +    P     L+S+E L      L       +G L  + +L + +N +    L     
Sbjct: 91  PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS 150

Query: 194 NLKFLFELDLSF------LPLSVGNLTNLK----SLGLMDNHLSGSIPPSFGNSMLTWLT 243
           NL  L  +DLS+          +  L        SL +  N +      +F    L  LT
Sbjct: 151 NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELT 210

Query: 244 LSGNHFTGYLPHNICRG-------GLLEAFIVSENHFQGTIPESLRNCTSL--IRVRLNG 294
           L GN  +  +     +         L+      E + +   P  +     +     RL  
Sbjct: 211 LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTY 270

Query: 295 NNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIG 354
            N   +         N++ + L+  +   +   +  K  K  +L++    +         
Sbjct: 271 TNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLKQ---FPTL 325

Query: 355 NMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLT--GRLPTEIGSLIELEYLDF 412
           ++  L++L L++N     I  +   L SL+ L L  N L+  G           L +LD 
Sbjct: 326 DLPFLKSLTLTMNKG--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL 383

Query: 413 SANKFNNSVPESLGNLLKLHYLGLSNNQF-VLELPKELEKLVQLSELDASHNLFGGEIPF 471
           S N     +  +   L +L +L   ++    +        L +L  LD S+     +   
Sbjct: 384 SFNGA-IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG 442

Query: 472 QICSLKSLEKLNLSHNNLSGLIP-NCFEGMHGLSIIDISDNQLQGPVPNS 520
               L SL  L ++ N+       N F     L+ +D+S  QL+      
Sbjct: 443 IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV 492

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  159 bits (404), Expect = 2e-41
 Identities = 84/413 (20%), Positives = 135/413 (32%), Gaps = 38/413 (9%)

Query: 138 GSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKF 197
           GS+ P +  + +I         L+  +P  +   S+   + ++ N L      +  N   
Sbjct: 2   GSLNPCIEVVPNI-TYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSE 57

Query: 198 LFELDLSF------LPLSVGNLTNLKSLGLMDNHLSGSIPPSFGN-SMLTWLTLSGNHFT 250
           L  LDLS          +   L +L +L L  N +    P SF   + L  L        
Sbjct: 58  LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117

Query: 251 GYLPHNICRGGLLEAFIVSENHFQG-TIPESLRNCTSLIRVRLNGNNLTGNISEALGLYP 309
                 I +   L+   V+ N      +P    N T+L+ V L+ N +       L    
Sbjct: 118 SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR 177

Query: 310 NLTF----IDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPRE-IGNMSQLQALDL 364
                   +D+S N     I     +  KL  L +  N  +  I +  + N++ L    L
Sbjct: 178 ENPQVNLSLDMSLNPI-DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRL 236

Query: 365 SLNHIVGEI------PKELGKLNSLTKLILR--GNQLTGRLPTEIGSLIELEYLDFSANK 416
            L     E       P  +  L  +T    R            +   L  +  +  +   
Sbjct: 237 ILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS 296

Query: 417 FNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSL 476
                 E +    K   L +   Q   + P     L  L  L  + N   G I F+  +L
Sbjct: 297 IKY--LEDVPKHFKWQSLSIIRCQL-KQFPT--LDLPFLKSLTLTMNK--GSISFKKVAL 349

Query: 477 KSLEKLNLSHNNLSGLIPNCFE--GMHGLSIIDISDNQLQGPVPNSTAFRNAP 527
            SL  L+LS N LS      +   G + L  +D+S N        S  F    
Sbjct: 350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM---SANFMGLE 399

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  158 bits (401), Expect = 3e-41
 Identities = 72/395 (18%), Positives = 128/395 (32%), Gaps = 39/395 (9%)

Query: 61  TGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEV 120
             ++     F   +    + LD+SLN     I  Q     KL  ++L  N  S  I    
Sbjct: 166 QTITVNDLQFLRENPQVNLSLDMSLN-PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTC 224

Query: 121 GL-LTHLKVLSFQFNELDGSIPPEVCQLS--------SIEELFLYSNHLNGSLPPFLGNL 171
              L  L V      E       E+ + S        +I+E  L   +           L
Sbjct: 225 LQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCL 284

Query: 172 SNIVRLYINNNS-----------------LSGSILTNI--GNLKFLFELDLSF----LPL 208
           +N+  + +   S                 +    L      +L FL  L L+     +  
Sbjct: 285 ANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISF 344

Query: 209 SVGNLTNLKSLGLMDNHLSGSIPPSF---GNSMLTWLTLSGNHFTGYLPHNICRGGLLEA 265
               L +L  L L  N LS S   S+   G + L  L LS N     +  N      L+ 
Sbjct: 345 KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQH 403

Query: 266 FIVSENHFQGTIPES-LRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGE 324
                +  +     S   +   L+ + ++  N   +         +L  + ++ N+F   
Sbjct: 404 LDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN 463

Query: 325 ISSN-WGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSL 383
             SN +     L  L++S   +          + +LQ L++S N+++        +L SL
Sbjct: 464 TLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSL 523

Query: 384 TKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFN 418
           + L    N++             L + + + N   
Sbjct: 524 STLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  192 bits (490), Expect = 3e-54
 Identities = 90/443 (20%), Positives = 170/443 (38%), Gaps = 35/443 (7%)

Query: 53  VTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQL 112
                L  T ++ T+   S +   Q+  L     G        +  L  L+ I+  +NQL
Sbjct: 26  KMKTVLGKTNVTDTV---SQTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQL 80

Query: 113 SGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLS 172
           +   P  +  LT L  +    N++  +    +  L+++  L L++N +       L NL+
Sbjct: 81  TDITP--LKNLTKLVDILMNNNQI--ADITPLANLTNLTGLTLFNNQITD--IDPLKNLT 134

Query: 173 NIVRLYINNNSLSGSILTNIGNLKFLFELDLS---FLPLSVGNLTNLKSLGLMDNHLSGS 229
           N+ RL +++N++S   ++ +  L  L +L           + NLT L+ L +  N +S  
Sbjct: 135 NLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS-D 191

Query: 230 IPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIR 289
           I      + L  L  + N  +   P  I     L+   ++ N        +L + T+L  
Sbjct: 192 ISVLAKLTNLESLIATNNQISDITPLGILTN--LDELSLNGNQL--KDIGTLASLTNLTD 247

Query: 290 VRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGI 349
           + L  N ++      L     LT + L  N       S       L  L ++ N +    
Sbjct: 248 LDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDIS 303

Query: 350 PREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEY 409
           P  I N+  L  L L  N+I    P  +  L  L +L    N+++    + + +L  + +
Sbjct: 304 P--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINW 357

Query: 410 LDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEI 469
           L    N+ ++  P  L NL ++  LGL++  +          +   + +           
Sbjct: 358 LSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL--IA 413

Query: 470 PFQICSLKSLEKLNLSHNNLSGL 492
           P  I    S  + +++ N  S  
Sbjct: 414 PATISDGGSYTEPDITWNLPSYT 436

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  190 bits (485), Expect = 2e-53
 Identities = 95/452 (21%), Positives = 171/452 (37%), Gaps = 60/452 (13%)

Query: 70  FSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVL 129
           F+ ++  + +   L       T+     +L +++ +  D   +       V  L +L  +
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK--SIDGVEYLNNLTQI 73

Query: 130 SFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSIL 189
           +F  N+L    P  +  L+ + ++ + +N +       L NL+N+  L + NN ++   +
Sbjct: 74  NFSNNQLTDITP--LKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQITD--I 127

Query: 190 TNIGNLKFLFELDLSFLPLS----VGNLTNLKSLGLMDNHLSGSIPPSFGN-SMLTWLTL 244
             + NL  L  L+LS   +S    +  LT+L+ L    N ++   P    N + L  L +
Sbjct: 128 DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSF-GNQVTDLKP--LANLTTLERLDI 184

Query: 245 SGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEA 304
           S N  +                              L   T+L  +    N ++      
Sbjct: 185 SSNKVSD--------------------------ISVLAKLTNLESLIATNNQISD--ITP 216

Query: 305 LGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDL 364
           LG+  NL  + L+ N    +          L  L+++ N I+   P  +  +++L  L L
Sbjct: 217 LGILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKL 272

Query: 365 SLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPES 424
             N I    P  L  L +LT L L  NQL     + I +L  L YL    N  ++  P  
Sbjct: 273 GANQISNISP--LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP-- 326

Query: 425 LGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNL 484
           + +L KL  L   NN+  +     L  L  ++ L A HN      P    +L  + +L L
Sbjct: 327 VSSLTKLQRLFFYNNK--VSDVSSLANLTNINWLSAGHNQISDLTPLA--NLTRITQLGL 382

Query: 485 SHNNLSGLIPNCFEGMHGLSIIDISDNQLQGP 516
           +    +    N    +   + +      L  P
Sbjct: 383 NDQAWTNAPVNYKANVSIPNTVKNVTGALIAP 414

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  171 bits (435), Expect = 1e-46
 Identities = 87/400 (21%), Positives = 149/400 (37%), Gaps = 56/400 (14%)

Query: 123 LTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNN 182
           L            +  ++      L  +  L      +       +  L+N+ ++  +NN
Sbjct: 23  LAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNN 78

Query: 183 SLSGSILTNIGNLKFLFELDLSFLPLS----VGNLTNLKSLGLMDNHLSGSIPPSFGNSM 238
            L+   +T + NL  L ++ ++   ++    + NLTNL  L L +N ++  I P    + 
Sbjct: 79  QLTD--ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQIT-DIDPLKNLTN 135

Query: 239 LTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLT 298
           L  L LS N  +                             +L   TSL ++    N +T
Sbjct: 136 LNRLELSSNTISD--------------------------ISALSGLTSLQQLSFG-NQVT 168

Query: 299 GNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQ 358
               + L     L  +D+S N       S   K   L +L  + N I+   P  +G ++ 
Sbjct: 169 D--LKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTN 222

Query: 359 LQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFN 418
           L  L L+ N +       L  L +LT L L  NQ++      +  L +L  L   AN+ +
Sbjct: 223 LDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQIS 278

Query: 419 NSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKS 478
           N     L  L  L  L L+ NQ  LE    +  L  L+ L    N      P  + SL  
Sbjct: 279 NI--SPLAGLTALTNLELNENQ--LEDISPISNLKNLTYLTLYFNNISDISP--VSSLTK 332

Query: 479 LEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVP 518
           L++L   +N +S +       +  ++ +    NQ+    P
Sbjct: 333 LQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISDLTP 370

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 81.9 bits (203), Expect = 1e-16
 Identities = 41/191 (21%), Positives = 78/191 (40%), Gaps = 12/191 (6%)

Query: 71  SFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLS 130
             +    L +L+L+ N      P  I NL  L+Y++L  N +S   P  V  LT L+ L 
Sbjct: 282 PLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLF 337

Query: 131 FQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILT 190
           F  N++  S    +  L++I  L    N ++   P  L NL+ I +L +N+ + + + + 
Sbjct: 338 FYNNKV--SDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVN 393

Query: 191 NIGNLKFLFELD----LSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSG 246
              N+     +         P ++ +  +     +  N  S +   S+  S    +    
Sbjct: 394 YKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGT 453

Query: 247 NHFTGYLPHNI 257
             F+G +   +
Sbjct: 454 TTFSGTVTQPL 464

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  190 bits (484), Expect = 2e-52
 Identities = 107/506 (21%), Positives = 178/506 (35%), Gaps = 48/506 (9%)

Query: 53  VTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQL 112
             N+ L    L   L  +SF SFP+L  LDLS             +L+ LS + L  N +
Sbjct: 30  TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 113 SGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLN-GSLPPFLGNL 171
                     L+ L+ L      L       +  L +++EL +  N +    LP +  NL
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148

Query: 172 SNIVRLYINNN---SLSGSILTNIGNLKFL-FELDLS-----FLPLSVGNLTNLKSLGLM 222
           +N+  L +++N   S+  + L  +  +  L   LDLS     F+         L  L L 
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLR 208

Query: 223 DNHLSGSIPPSF--GNSMLTWLTLSGNHFTGY---------LPHNICRGGLLEAFIVSEN 271
           +N  S ++  +   G + L    L    F                +C   + E  +   +
Sbjct: 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 268

Query: 272 HFQGTIPESLRNCTSLIRVRLNGNNLTG--NISEALGLY-----------------PNLT 312
           ++   I +     T++    L    +    + S   G                    +L 
Sbjct: 269 YYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLK 328

Query: 313 FIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNIT--GGIPREIGNMSQLQALDLSLNHIV 370
            +  + N      S      P L  L++S N ++  G   +     + L+ LDLS N ++
Sbjct: 329 RLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386

Query: 371 GEIPKELGKLNSLTKLILRGNQLTGRLPTEI-GSLIELEYLDFSANKFNNSVPESLGNLL 429
             +      L  L  L  + + L       +  SL  L YLD S      +       L 
Sbjct: 387 -TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 445

Query: 430 KLHYLGLSNNQFVLELPKE-LEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNN 488
            L  L ++ N F      +   +L  L+ LD S        P    SL SL+ LN++ N 
Sbjct: 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ 505

Query: 489 LSGLIPNCFEGMHGLSIIDISDNQLQ 514
           L  +    F+ +  L  I +  N   
Sbjct: 506 LKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  164 bits (418), Expect = 1e-43
 Identities = 90/472 (19%), Positives = 157/472 (33%), Gaps = 58/472 (12%)

Query: 75  FPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFN 134
                +LDLS N           +  +L  + L   ++          L+HL  L    N
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 135 ELDGSIPPEV-CQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSL-SGSILTNI 192
            +  S+       LSS+++L     +L       +G+L  +  L + +N + S  +    
Sbjct: 87  PIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 193 GNLKFLFELDLSFLPLSV------GNLTNLK----SLGLMDNHLSGSIPPSFGNSMLTWL 242
            NL  L  LDLS   +          L  +     SL L  N ++   P +F    L  L
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKL 205

Query: 243 TLSGNHFTGYLPHNICRG-------GLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGN 295
           TL  N  +  +     +G        L+     +E + +     +L    +L        
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265

Query: 296 NLTGNISEALGLY---PNLTFIDLSRNNFYG-EISSNWGKCPKLGTLNVSMNNITGGIPR 351
            L   + + + L+    N++   L        +  S       L  +N            
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL--- 322

Query: 352 EIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLT--GRLPTEIGSLIELEY 409
               +  L+ L  + N   G    E+  L SL  L L  N L+  G           L+Y
Sbjct: 323 ---KLKSLKRLTFTSNKG-GNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY 377

Query: 410 LDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEI 469
           LD S N    ++  +   L +L +L   ++            L Q+SE     +L     
Sbjct: 378 LDLSFNGVI-TMSSNFLGLEQLEHLDFQHSN-----------LKQMSEFSVFLSL----- 420

Query: 470 PFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNST 521
                  ++L  L++SH +        F G+  L ++ ++ N  Q       
Sbjct: 421 -------RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  158 bits (402), Expect = 2e-41
 Identities = 100/484 (20%), Positives = 159/484 (32%), Gaps = 64/484 (13%)

Query: 82  DLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIP 141
                 F+  IP  +   TK   + L  N L             L+VL     E+  +I 
Sbjct: 13  QCMELNFY-KIPDNLPFSTK--NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIE 68

Query: 142 PEVCQ-LSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFE 200
               Q LS +  L L  N +          LS++ +L     +L+      IG+LK L E
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

Query: 201 LDLSF-------LPLSVGNLTNLKSLGLMDNHLSGSIPPSF----------------GNS 237
           L+++        LP    NLTNL+ L L  N +                         N 
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188

Query: 238 M------------LTWLTLSGNHFTGYLPHNICRG-------GLLEAFIVSENHFQGTIP 278
           M            L  LTL  N  +  +     +G        L+     +E + +    
Sbjct: 189 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 248

Query: 279 ESLRNCTSLIRVRLNGNNLTGNISEALGLY---PNLTFIDLSRNNFYG-EISSNWGKCPK 334
            +L    +L         L   + + + L+    N++   L        +  S       
Sbjct: 249 SALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQH 308

Query: 335 LGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLT 394
           L  +N                +  L+ L  + N   G    E+  L SL  L L  N L+
Sbjct: 309 LELVNCKFGQFPT------LKLKSLKRLTFTSNKG-GNAFSEVD-LPSLEFLDLSRNGLS 360

Query: 395 --GRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFV-LELPKELEK 451
             G           L+YLD S N    ++  +   L +L +L   ++    +        
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 419

Query: 452 LVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLI-PNCFEGMHGLSIIDISD 510
           L  L  LD SH             L SLE L ++ N+      P+ F  +  L+ +D+S 
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479

Query: 511 NQLQ 514
            QL+
Sbjct: 480 CQLE 483

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  120 bits (303), Expect = 1e-28
 Identities = 69/350 (19%), Positives = 114/350 (32%), Gaps = 40/350 (11%)

Query: 214 TNLKSLGLMDNHLSGSIPPSFGN-SMLTWLTLSGNHFTGYLPHNICRG-GLLEAFIVSEN 271
            + K+L L  N L      SF +   L  L LS       +     +    L   I++ N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGN 86

Query: 272 HFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNF-YGEISSNWG 330
             Q     +    +SL ++     NL    +  +G    L  ++++ N     ++   + 
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 331 KCPKLGTLNVSMNNITGGIPREIGNMSQLQA----LDLSLNHIVGEIPKELGKLNSLTKL 386
               L  L++S N I      ++  + Q+      LDLSLN +   I     K   L KL
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFKEIRLHKL 205

Query: 387 ILRGNQLTGRLP-TEIGSLIELEYLDFSANKFNN---------SVPESLGNLLKLHYLGL 436
            LR N  +  +  T I  L  LE       +F N         S  E L NL    +   
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265

Query: 437 SNNQFVLELPKELEKLVQLSELDASHN-------------------LFGGEIPFQICSLK 477
             + ++ ++      L  +S                          +      F    LK
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLK 325

Query: 478 SLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNSTAFRNAP 527
           SL++L  + N            +  L  +D+S N L      S +     
Sbjct: 326 SLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT 373

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  110 bits (277), Expect = 1e-25
 Identities = 56/292 (19%), Positives = 104/292 (35%), Gaps = 19/292 (6%)

Query: 244 LSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISE 303
               +F   +P N+      +   +S N  +     S  +   L  + L+   +      
Sbjct: 14  CMELNFY-KIPDNLPFS--TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70

Query: 304 ALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALD 363
           A     +L+ + L+ N         +     L  L     N+       IG++  L+ L+
Sbjct: 71  AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130

Query: 364 LSLNHI-VGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEY----LDFSANKFN 418
           ++ N I   ++P+    L +L  L L  N++     T++  L ++      LD S N   
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM- 189

Query: 419 NSVPESLGNLLKLHYLGLSNNQFVLELPKE-LEKLVQLSELDASHNLFGGE---IPFQIC 474
           N +       ++LH L L NN   L + K  ++ L  L         F  E     F   
Sbjct: 190 NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS 249

Query: 475 SLKSLEKLNLSHNNLSGL------IPNCFEGMHGLSIIDISDNQLQGPVPNS 520
           +L+ L  L +    L+ L      I + F  +  +S   +    ++     S
Sbjct: 250 ALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS 301

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  101 bits (253), Expect = 2e-22
 Identities = 49/221 (22%), Positives = 82/221 (37%), Gaps = 16/221 (7%)

Query: 309 PNLTFIDLSRNNFY---GEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLS 365
           PN+T+      NFY     +  +         L++S N +         +  +LQ LDLS
Sbjct: 8   PNITY-QCMELNFYKIPDNLPFS------TKNLDLSFNPLRHLGSYSFFSFPELQVLDLS 60

Query: 366 LNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESL 425
              I          L+ L+ LIL GN +          L  L+ L        +     +
Sbjct: 61  RCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI 120

Query: 426 GNLLKLHYLGLSNNQF-VLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLE---- 480
           G+L  L  L +++N     +LP+    L  L  LD S N         +  L  +     
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180

Query: 481 KLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNST 521
            L+LS N ++ + P  F+ +  L  + + +N     V  + 
Sbjct: 181 SLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTC 220

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 87.8 bits (218), Expect = 3e-18
 Identities = 48/263 (18%), Positives = 90/263 (34%), Gaps = 22/263 (8%)

Query: 52  RVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQ 111
            V++ SL +  +           +  L  ++     F          L  L  ++  SN+
Sbjct: 283 NVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF------PTLKLKSLKRLTFTSNK 336

Query: 112 LSGKIPAEVGLLTHLKVLSFQFNELD--GSIPPEVCQLSSIEELFLYSNHLNGSLPPFLG 169
                 +EV L   L+ L    N L   G         +S++ L L  N +  ++     
Sbjct: 337 GG-NAFSEVDL-PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFL 393

Query: 170 NLSNIVRLYINNNSLSGSILTNI-GNLKFLFELDLSFLPLSV------GNLTNLKSLGLM 222
            L  +  L   +++L      ++  +L+ L  LD+S     V        L++L+ L + 
Sbjct: 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 453

Query: 223 DNHLSGSIPPSFGNSM--LTWLTLSGNHFTGYLPHNICRG-GLLEAFIVSENHFQGTIPE 279
            N    +  P     +  LT+L LS       L          L+   ++ N  +     
Sbjct: 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMASNQLKSVPDG 512

Query: 280 SLRNCTSLIRVRLNGNNLTGNIS 302
                TSL ++ L+ N    +  
Sbjct: 513 IFDRLTSLQKIWLHTNPWDCSCP 535

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  180 bits (458), Expect = 6e-51
 Identities = 69/393 (17%), Positives = 149/393 (37%), Gaps = 52/393 (13%)

Query: 126 LKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLS 185
              L+     ++   P     L+      L    +          L +I +L +    ++
Sbjct: 2   AATLATLPAPINQIFPDA--DLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVA 57

Query: 186 GSILTNIGNLKFLFELDLSFLPLS----VGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTW 241
              +  I  L  L  L+L+   ++    + NL  L +L +  N ++  I      + L  
Sbjct: 58  S--IQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKIT-DISALQNLTNLRE 114

Query: 242 LTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNI 301
           L L+ ++ +                              L N T +  + L  N+   ++
Sbjct: 115 LYLNEDNISD--------------------------ISPLANLTKMYSLNLGANHNLSDL 148

Query: 302 SEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQA 361
           S  L     L ++ ++ +    +  +       L +L+++ N I    P  + +++ L  
Sbjct: 149 SP-LSNMTGLNYLTVTESKV--KDVTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHY 203

Query: 362 LDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSV 421
               +N I    P  +  +  L  L +  N++T    + + +L +L +L+   N+ ++  
Sbjct: 204 FTAYVNQITDITP--VANMTRLNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQISD-- 257

Query: 422 PESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEK 481
             ++ +L KL  L + +NQ  +     L  L QL+ L  ++N  G E    I  L +L  
Sbjct: 258 INAVKDLTKLKMLNVGSNQ--ISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315

Query: 482 LNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQ 514
           L LS N+++ + P     +  +   D ++  ++
Sbjct: 316 LFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  169 bits (431), Expect = 3e-47
 Identities = 78/368 (21%), Positives = 139/368 (37%), Gaps = 50/368 (13%)

Query: 152 ELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLS-- 209
            L      +N   P    +L+  +R  +   S++   +     L+ + +L ++   ++  
Sbjct: 4   TLATLPAPINQIFP--DADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVASI 59

Query: 210 --VGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFI 267
             +  LTNL+ L L  N ++  I P      LT L +  N  T                 
Sbjct: 60  QGIEYLTNLEYLNLNGNQIT-DISPLSNLVKLTNLYIGTNKIT----------------- 101

Query: 268 VSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISS 327
                       +L+N T+L  + LN +N++      L     +  ++L  N+   ++S 
Sbjct: 102 ---------DISALQNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSDLS- 149

Query: 328 NWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLI 387
                  L  L V+ + +    P  I N++ L +L L+ N I    P  L  L SL    
Sbjct: 150 PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFT 205

Query: 388 LRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPK 447
              NQ+T    T + ++  L  L    NK  +     L NL +L +L +  NQ  +    
Sbjct: 206 AYVNQITD--ITPVANMTRLNSLKIGNNKITDL--SPLANLSQLTWLEIGTNQ--ISDIN 259

Query: 448 ELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIID 507
            ++ L +L  L+   N           +L  L  L L++N L         G+  L+ + 
Sbjct: 260 AVKDLTKLKMLNVGSNQISDISVLN--NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLF 317

Query: 508 ISDNQLQG 515
           +S N +  
Sbjct: 318 LSQNHITD 325

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  164 bits (418), Expect = 2e-45
 Identities = 79/368 (21%), Positives = 144/368 (39%), Gaps = 51/368 (13%)

Query: 53  VTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQL 112
                L+   ++  +   +      +  L ++           I  LT L Y++L+ NQ+
Sbjct: 24  GIRAVLQKASVTDVV---TQEELESITKLVVAGEKV--ASIQGIEYLTNLEYLNLNGNQI 78

Query: 113 SGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLS 172
           +   P  +  L  L  L    N++  +    +  L+++ EL+L  ++++      L NL+
Sbjct: 79  TDISP--LSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISD--ISPLANLT 132

Query: 173 NIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLS----VGNLTNLKSLGLMDNHLSG 228
            +  L +  N    S L+ + N+  L  L ++   +     + NLT+L SL L  N +  
Sbjct: 133 KMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIE- 190

Query: 229 SIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLI 288
            I P    + L + T   N  T                              + N T L 
Sbjct: 191 DISPLASLTSLHYFTAYVNQITD--------------------------ITPVANMTRLN 224

Query: 289 RVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGG 348
            +++  N +T      L     LT++++  N       +      KL  LNV  N I+  
Sbjct: 225 SLKIGNNKITD--LSPLANLSQLTWLEIGTNQI--SDINAVKDLTKLKMLNVGSNQISD- 279

Query: 349 IPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELE 408
               + N+SQL +L L+ N +  E  + +G L +LT L L  N +T      + SL +++
Sbjct: 280 -ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD--IRPLASLSKMD 336

Query: 409 YLDFSANK 416
             DF+   
Sbjct: 337 SADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  138 bits (349), Expect = 5e-36
 Identities = 56/303 (18%), Positives = 112/303 (36%), Gaps = 22/303 (7%)

Query: 216 LKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQG 275
             +L  +   ++  I P    +      L     T  +         +   +V+      
Sbjct: 2   AATLATLPAPIN-QIFPDADLAEGIRAVLQKASVTDVVTQEELES--ITKLVVAGEKV-- 56

Query: 276 TIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKL 335
              + +   T+L  + LNGN +T      L     LT + +  N       S       L
Sbjct: 57  ASIQGIEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKI--TDISALQNLTNL 112

Query: 336 GTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTG 395
             L ++ +NI+   P  + N++++ +L+L  NH +      L  +  L  L +  +++  
Sbjct: 113 RELYLNEDNISDISP--LANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKD 169

Query: 396 RLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQL 455
              T I +L +L  L  + N+  +     L +L  LHY     NQ  +     +  + +L
Sbjct: 170 --VTPIANLTDLYSLSLNYNQIEDI--SPLASLTSLHYFTAYVNQ--ITDITPVANMTRL 223

Query: 456 SELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQG 515
           + L   +N      P    +L  L  L +  N +S +     + +  L ++++  NQ+  
Sbjct: 224 NSLKIGNNKITDLSPL--ANLSQLTWLEIGTNQISDINA--VKDLTKLKMLNVGSNQISD 279

Query: 516 PVP 518
              
Sbjct: 280 ISV 282

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  136 bits (346), Expect = 1e-35
 Identities = 60/302 (19%), Positives = 118/302 (39%), Gaps = 44/302 (14%)

Query: 72  FSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSF 131
            S+  +L +L +  N    T  S + NLT L  + L+ + +S   P  +  LT +  L+ 
Sbjct: 84  LSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNL 139

Query: 132 QFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTN 191
             N    S    +  ++ +  L +  + +       + NL+++  L +N N +    ++ 
Sbjct: 140 GANHN-LSDLSPLSNMTGLNYLTVTESKVKDV--TPIANLTDLYSLSLNYNQIED--ISP 194

Query: 192 IGNLKFLFELDLSFLPLS----VGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGN 247
           + +L  L         ++    V N+T L SL + +N ++  + P    S LTWL +  N
Sbjct: 195 LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKIT-DLSPLANLSQLTWLEIGTN 253

Query: 248 HFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGL 307
             +                             ++++ T L  + +  N ++      L  
Sbjct: 254 QISD--------------------------INAVKDLTKLKMLNVGSNQISD--ISVLNN 285

Query: 308 YPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLN 367
              L  + L+ N    E     G    L TL +S N+IT   P  + ++S++ + D +  
Sbjct: 286 LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQ 343

Query: 368 HI 369
            I
Sbjct: 344 VI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 68.3 bits (168), Expect = 2e-12
 Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 6/115 (5%)

Query: 71  SFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLS 130
             ++  QL  L++  N    +  + + +LTKL  +++ SNQ+S    + +  L+ L  L 
Sbjct: 238 PLANLSQLTWLEIGTNQI--SDINAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLF 293

Query: 131 FQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLS 185
              N+L       +  L+++  LFL  NH+    P  L +LS +      N  + 
Sbjct: 294 LNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  175 bits (447), Expect = 1e-49
 Identities = 58/339 (17%), Positives = 109/339 (32%), Gaps = 26/339 (7%)

Query: 162 GSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSF--LPLSVGNLTNLKSL 219
           GS      + S    LY   ++        +   +  +  D +         N  N +  
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIE 61

Query: 220 GLMDNHLSGSIPPSFGNSM---LTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGT 276
                 L  +      ++       L L         P    R   L+   +        
Sbjct: 62  TRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-E 118

Query: 277 IPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLG 336
           +P++++    L  + L  N L   +  ++     L  + +                 +L 
Sbjct: 119 LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACP-------------ELT 164

Query: 337 TLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGR 396
            L   + +       E   +  LQ+L L    I   +P  +  L +L  L +R + L+  
Sbjct: 165 ELPEPLASTD--ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA- 220

Query: 397 LPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLS 456
           L   I  L +LE LD        + P   G    L  L L +   +L LP ++ +L QL 
Sbjct: 221 LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLE 280

Query: 457 ELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPN 495
           +LD    +    +P  I  L +   + +  +  + L  +
Sbjct: 281 KLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  155 bits (395), Expect = 2e-42
 Identities = 52/376 (13%), Positives = 112/376 (29%), Gaps = 73/376 (19%)

Query: 78  LVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELD 137
             +L    +         +    +      +    + +         + ++ +     L 
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNPQIETRTGRAL- 68

Query: 138 GSIPPEVCQLSSI--EELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNL 195
            +    +   +      L L S  L    P     LS++  + I+   L           
Sbjct: 69  KATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLME--------- 118

Query: 196 KFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGN-SMLTWLTLSGNHFTGYLP 254
                     LP ++     L++L L  N L  ++P S  + + L  L++        LP
Sbjct: 119 ----------LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELP 167

Query: 255 HNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFI 314
             +                        +   +L  +RL    +                 
Sbjct: 168 EPLA---------------STDASGEHQGLVNLQSLRLEWTGIR---------------- 196

Query: 315 DLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIP 374
                     + ++      L +L +  + ++  +   I ++ +L+ LDL     +   P
Sbjct: 197 ---------SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYP 246

Query: 375 KELGKLNSLTKLILRG-NQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHY 433
              G    L +LIL+  + L   LP +I  L +LE LD       + +P  +  L     
Sbjct: 247 PIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI 305

Query: 434 LGLSNNQFVLELPKEL 449
           + +  +    +L +  
Sbjct: 306 ILVPPHL-QAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  138 bits (351), Expect = 2e-36
 Identities = 49/251 (19%), Positives = 78/251 (31%), Gaps = 22/251 (8%)

Query: 276 TIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKC--P 333
              + L           N  +     + +     N   I+          +        P
Sbjct: 27  PYHDVLSQWQRHYNADRNRWHSAWRQANS-----NNPQIETRTGRALKATADLLEDATQP 81

Query: 334 KLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQL 393
               L +    +    P +   +S LQ + +    ++ E+P  + +   L  L L  N L
Sbjct: 82  GRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPL 139

Query: 394 TGRLPTEIGSLIELEYLDFSANKFNNSVPESLGN---------LLKLHYLGLSNNQFVLE 444
              LP  I SL  L  L   A      +PE L +         L+ L  L L        
Sbjct: 140 R-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-S 197

Query: 445 LPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLS 504
           LP  +  L  L  L   ++     +   I  L  LE+L+L         P  F G   L 
Sbjct: 198 LPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK 256

Query: 505 IIDISD-NQLQ 514
            + + D + L 
Sbjct: 257 RLILKDCSNLL 267

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 89.2 bits (222), Expect = 2e-19
 Identities = 30/162 (18%), Positives = 56/162 (34%), Gaps = 21/162 (12%)

Query: 71  SFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLS 130
                  L  L L   G   ++P+ I NL  L  + + ++ LS  +   +  L  L+ L 
Sbjct: 178 EHQGLVNLQSLRLEWTGI-RSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELD 235

Query: 131 FQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILT 190
            +      + PP     + ++ L L       +LP  +  L+ + +L +           
Sbjct: 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV------- 288

Query: 191 NIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPP 232
                      +LS LP  +  L     + L+  HL   +  
Sbjct: 289 -----------NLSRLPSLIAQLPANCII-LVPPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 62.3 bits (152), Expect = 2e-10
 Identities = 22/99 (22%), Positives = 36/99 (36%), Gaps = 3/99 (3%)

Query: 71  SFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISL-DSNQLSGKIPAEVGLLTHLKVL 129
           +    P+L  LDL         P   G    L  + L D + L   +P ++  LT L+ L
Sbjct: 224 AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKL 282

Query: 130 SFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFL 168
             +       +P  + QL +   + +   HL   L    
Sbjct: 283 DLRGCVNLSRLPSLIAQLPANCIILV-PPHLQAQLDQHR 320

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  177 bits (450), Expect = 8e-49
 Identities = 97/443 (21%), Positives = 152/443 (34%), Gaps = 68/443 (15%)

Query: 66  TLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTH 125
            +         Q   L+L+  G   ++P    +L  L       N L+ ++P     L  
Sbjct: 61  AVSRLRDCLDRQAHELELNNLGL-SSLPELPPHLESLV---ASCNSLT-ELPELPQSLKS 115

Query: 126 LKVLSFQFNELDGSIP---------------PEVCQLSSIEELFLYSNHLNGSLPPFLGN 170
           L V +     L    P               PE+   S ++ + + +N L   LP    +
Sbjct: 116 LLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDLPPS 174

Query: 171 LSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSV--GNLTNLKSLGLMDNHLSG 228
           L     +   NN L    L  + NL FL  +      L        +L+S+   +N L  
Sbjct: 175 L---EFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILE- 228

Query: 229 SIPPSFGN-SMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSL 287
              P   N   LT +    N     LP        LEA  V +N+    +PE  ++ T L
Sbjct: 229 -ELPELQNLPFLTTIYADNNLLK-TLPDLPPS---LEALNVRDNYLT-DLPELPQSLTFL 282

Query: 288 IRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITG 347
                  + L+          PNL +++ S N     +       P L  LNVS N +  
Sbjct: 283 DVSENIFSGLSELP-------PNLYYLNASSNEI-RSLCDLP---PSLEELNVSNNKLIE 331

Query: 348 GIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIEL 407
            +P        L+ L  S NH+  E+P+      +L +L +  N L    P    S+ +L
Sbjct: 332 -LPALPPR---LERLIASFNHLA-EVPELPQ---NLKQLHVEYNPLR-EFPDIPESVEDL 382

Query: 408 EYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGG 467
                  N     VPE   NL +LH   +  N    E P   E    + +L  +      
Sbjct: 383 R-----MNSHLAEVPELPQNLKQLH---VETNPLR-EFPDIPE---SVEDLRMNSERVVD 430

Query: 468 EIPFQICSLKSLEKLNLSHNNLS 490
              F   +   LE     H++  
Sbjct: 431 PYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  165 bits (420), Expect = 1e-44
 Identities = 94/461 (20%), Positives = 159/461 (34%), Gaps = 81/461 (17%)

Query: 91  TIPSQIGNLTKLSYISLDSNQLSGKIPAEVG-------------LLTHLKVLSFQFNELD 137
            +P +  N+   +      ++     P   G             L      L      L 
Sbjct: 25  EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS 84

Query: 138 GSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKF 197
            S+P     L   E L    N L   LP    +L +++    N  +LS            
Sbjct: 85  -SLPELPPHL---ESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALS-------DLPPL 132

Query: 198 LFELDLSFLPLS----VGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYL 253
           L  L +S   L     + N + LK + + +N L   +P    +  L ++    N     L
Sbjct: 133 LEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDLPPS--LEFIAAGNNQLE-EL 188

Query: 254 PHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTF 313
           P  +     L A     N  +  +P+   +  S++      N L   + E L   P LT 
Sbjct: 189 P-ELQNLPFLTAIYADNNSLK-KLPDLPLSLESIV---AGNNILE-ELPE-LQNLPFLTT 241

Query: 314 IDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEI 373
           I    N     + +     P L  LNV  N +T  +P    +++ L   +   + +  E+
Sbjct: 242 IYADNNL----LKTLPDLPPSLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLS-EL 295

Query: 374 PKELGKLN--------------SLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNN 419
           P  L  LN              SL +L +  N+L   LP        LE L  S N    
Sbjct: 296 PPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHL-A 350

Query: 420 SVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSL 479
            VPE   NL +LH   +  N    E P   E    + +L  + +L   E+P      ++L
Sbjct: 351 EVPELPQNLKQLH---VEYNPLR-EFPDIPE---SVEDLRMNSHL--AEVPE---LPQNL 398

Query: 480 EKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNS 520
           ++L++  N L        +    +  + ++  ++  P   +
Sbjct: 399 KQLHVETNPLREF----PDIPESVEDLRMNSERVVDPYEFA 435

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  155 bits (393), Expect = 4e-41
 Identities = 75/374 (20%), Positives = 122/374 (32%), Gaps = 67/374 (17%)

Query: 140 IPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLF 199
           I P     + ++E   +S++L   +P    N+ +    Y   +    +     G      
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQ---- 57

Query: 200 ELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICR 259
             +++   L          L L +  LS S+P    +  L  L  S N  T         
Sbjct: 58  -REMAVSRLRDCLDRQAHELELNNLGLS-SLPELPPH--LESLVASCNSLT--------- 104

Query: 260 GGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRN 319
                            +PE  ++  SL+    N   L+          P L ++ +S N
Sbjct: 105 ----------------ELPELPQSLKSLLVDNNNLKALSDLP-------PLLEYLGVSNN 141

Query: 320 NFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGK 379
               E          L  ++V  N++   +P    +   L+ +    N +  E   EL  
Sbjct: 142 QL--EKLPELQNSSFLKIIDVDNNSLK-KLPDLPPS---LEFIAAGNNQL--EELPELQN 193

Query: 380 LNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNN 439
           L  LT +    N L  +LP    S   LE +    N         L NL  L  +   NN
Sbjct: 194 LPFLTAIYADNNSLK-KLPDLPLS---LESIVAGNNIL--EELPELQNLPFLTTIYADNN 247

Query: 440 QFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEG 499
                LP        L  L+   N    ++P    SL  L+      + LS L PN    
Sbjct: 248 LLK-TLPDLPPS---LEALNVRDNYL-TDLPELPQSLTFLDVSENIFSGLSELPPN---- 298

Query: 500 MHGLSIIDISDNQL 513
              L  ++ S N++
Sbjct: 299 ---LYYLNASSNEI 309

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  125 bits (315), Expect = 1e-30
 Identities = 75/351 (21%), Positives = 124/351 (35%), Gaps = 46/351 (13%)

Query: 71  SFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLS 130
              +   L  +D+  N     +P    +L  ++     +NQL  ++P E+  L  L  + 
Sbjct: 148 ELQNSSFLKIIDVDNN-SLKKLPDLPPSLEFIA---AGNNQLE-ELP-ELQNLPFLTAIY 201

Query: 131 FQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILT 190
              N L   +P     L   E +   +N L     P L NL  +  +Y +NN L  ++  
Sbjct: 202 ADNNSLK-KLPDLPLSL---ESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPD 254

Query: 191 NIGNLKFLFELD--LSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNH 248
              +L+ L   D  L+ LP    +LT L     + + LS  +PP+     L +L  S N 
Sbjct: 255 LPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLS-ELPPN-----LYYLNASSNE 308

Query: 249 FTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLY 308
               L         LE   VS N     +P        LI    + N+L   + E     
Sbjct: 309 IRS-LCDLPPS---LEELNVSNNKLI-ELPALPPRLERLI---ASFNHLA-EVPELPQ-- 357

Query: 309 PNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNH 368
            NL  + +  N    E          L      MN+    +P    N   L+ L +  N 
Sbjct: 358 -NLKQLHVEYNPLR-EFPDIPESVEDL-----RMNSHLAEVPELPQN---LKQLHVETNP 407

Query: 369 IVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNN 419
           +  E P       S+  L +   ++         +  +LE   F  +  ++
Sbjct: 408 LR-EFPDIPE---SVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHHH 454

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  121 bits (306), Expect = 2e-29
 Identities = 66/324 (20%), Positives = 120/324 (37%), Gaps = 47/324 (14%)

Query: 205 FLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGN-SMLTWLTLSGNHFTGYLPHNICRGGLL 263
           F+     + T L+      ++L+  +P    N    T    + + +    P        +
Sbjct: 2   FINPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60

Query: 264 EAFIVSENHFQG------------TIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNL 311
               + +   +             ++PE   +  SL     + N+LT  + E      +L
Sbjct: 61  AVSRLRDCLDRQAHELELNNLGLSSLPELPPHLESL---VASCNSLT-ELPELPQSLKSL 116

Query: 312 TFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVG 371
              + +               P L  L VS N +   +P E+ N S L+ +D+  N +  
Sbjct: 117 LVDNNNLKALSDLP-------PLLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLK- 166

Query: 372 EIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKL 431
           ++P       SL  +    NQL   LP E+ +L  L  +    N     +P+   +L  +
Sbjct: 167 KLPDLPP---SLEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSL-KKLPDLPLSLESI 220

Query: 432 HYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSG 491
                 NN   LE   EL+ L  L+ + A +NL    +P    SL++L   +    +L  
Sbjct: 221 V---AGNNI--LEELPELQNLPFLTTIYADNNLL-KTLPDLPPSLEALNVRDNYLTDLPE 274

Query: 492 LIPNCFEGMHGLSIIDISDNQLQG 515
           L  +       L+ +D+S+N   G
Sbjct: 275 LPQS-------LTFLDVSENIFSG 291

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  171 bits (435), Expect = 8e-45
 Identities = 94/500 (18%), Positives = 165/500 (33%), Gaps = 55/500 (11%)

Query: 46  SCNDAGRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYI 105
           SC+  GR+      N      L             L LS N       S    L +L  +
Sbjct: 1   SCSFDGRIAFYRFCN------LTQV-PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLL 53

Query: 106 SLDSNQLSGKIPAEV-GLLTHLKVLSFQFNELDGSIPPEV-CQLSSIEELFLYSNHLNGS 163
            L S      I  E    L +L++L    +++   + P+    L  + EL LY   L+ +
Sbjct: 54  ELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDA 112

Query: 164 LPP--FLGNLSNIVRLYINNNSLSG-SILTNIGNLKFLFELDLSFLPLSVGN-------- 212
           +    +  NL  + RL ++ N +    +  + G L  L  +D S   + +          
Sbjct: 113 VLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ 172

Query: 213 LTNLKSLGLMDNHLSGSIPPSFGNSM-------LTWLTLSGNHFTGYLPHNICRGGLLEA 265
              L    L  N L   +   +G  M       L  L +SGN +T  +  N         
Sbjct: 173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFS------- 225

Query: 266 FIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALG--LYPNLTFIDLSRNNFYG 323
                N    +   SL     ++      +N+              ++  +DLS    + 
Sbjct: 226 -----NAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS 280

Query: 324 EISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSL 383
             S  +     L  LN++ N I          +  LQ L+LS N +          L  +
Sbjct: 281 LNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKV 340

Query: 384 TKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVL 443
             + L+ N +          L +L+ LD   N        ++  +  +  + LS N+   
Sbjct: 341 AYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKL-- 393

Query: 444 ELPKELEKLV-QLSELDASHNLFGG-EIPFQICSLKSLEKLNLSHNNLSGLIPNC-FEGM 500
                L K+    + +  S N     +I + +  +  L+ L L+ N  S    +      
Sbjct: 394 ---VTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSEN 450

Query: 501 HGLSIIDISDNQLQGPVPNS 520
             L  + + +N LQ      
Sbjct: 451 PSLEQLFLGENMLQLAWETE 470

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  169 bits (431), Expect = 3e-44
 Identities = 102/492 (20%), Positives = 178/492 (36%), Gaps = 55/492 (11%)

Query: 66  TLRDFSFSSFPQLVHLDLSLNGFFGTIPSQI-GNLTKLSYISLDSNQLSGKIPAEV-GLL 123
           T+   SF    QL  L+L       TI  +   NL  L  + L S+++   +  +    L
Sbjct: 38  TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY-FLHPDAFQGL 96

Query: 124 THLKVLSFQFNEL-DGSIPPEVCQ-LSSIEELFLYSNHLNG-SLPPFLGNLSNIVRLYIN 180
            HL  L   F  L D  +     + L ++  L L  N +    L P  G L+++  +  +
Sbjct: 97  FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS 156

Query: 181 NN---------------------SLSGSILTNIGNLKF------LFELDLSFLPLSVGNL 213
           +N                     SL+ + L +  ++ +         + L  L +S GN 
Sbjct: 157 SNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVS-GNG 215

Query: 214 TNLKSLGLMDNHLSGSIPPSFGNSM-LTWLTLSGNHFTGYLPHNICRGGL---LEAFIVS 269
             +   G   N +S S   S   +  +       ++       N   G     +    +S
Sbjct: 216 WTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK-DPDQNTFAGLARSSVRHLDLS 274

Query: 270 ENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNW 329
                            L  + L  N +     EA     NL  ++LS N      SSN+
Sbjct: 275 HGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNF 334

Query: 330 GKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILR 389
              PK+  +++  N+I     +    + +LQ LDL  N +       +  + S+  + L 
Sbjct: 335 YGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL-----TTIHFIPSIPDIFLS 389

Query: 390 GNQLTGRLPTEIGSLIELEYLDFSANKFNN-SVPESLGNLLKLHYLGLSNNQFV-LELPK 447
           GN+L   LP      +    +  S N+  N  +   L  +  L  L L+ N+F      +
Sbjct: 390 GNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ 445

Query: 448 ELEKLVQLSELDASHNLFGGEIPFQICS-----LKSLEKLNLSHNNLSGLIPNCFEGMHG 502
              +   L +L    N+       ++C      L  L+ L L+HN L+ L P  F  +  
Sbjct: 446 TPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTA 505

Query: 503 LSIIDISDNQLQ 514
           L  + ++ N+L 
Sbjct: 506 LRGLSLNSNRLT 517

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  151 bits (384), Expect = 2e-38
 Identities = 96/488 (19%), Positives = 164/488 (33%), Gaps = 53/488 (10%)

Query: 66  TLRDFSFSSFPQLVHLDLSLNGFFGTI--PSQIGNLTKLSYISLDSNQLSG-KIPAEVGL 122
            L   +F     L  L L   G    +       NL  L+ + L  NQ+    +    G 
Sbjct: 87  FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGK 146

Query: 123 LTHLKVLSFQFNELDGSIPPE---VCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVR-LY 178
           L  LK + F  N++   +        Q  ++    L +N L   +    G   N  R + 
Sbjct: 147 LNSLKSIDFSSNQIF-LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMV 205

Query: 179 INNNSLSGSILTNIGNLKFLFELDLSFLP-LSVGNLTNLKSLGLMDNHLSGSIPPSFGN- 236
           +    +SG+  T    +   F   +S     S+    ++   G   +++      +F   
Sbjct: 206 LEILDVSGNGWTVD--ITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGL 263

Query: 237 --SMLTWLTLSGNHFTGYLPHNICRG-GLLEAFIVSENHFQGTIPESLRNCTSLIRVRLN 293
             S +  L LS       L   +      L+   ++ N       E+     +L  + L+
Sbjct: 264 ARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS 322

Query: 294 GNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREI 353
            N L    S      P + +IDL +N+        +    KL TL++  N +T      I
Sbjct: 323 YNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TI 377

Query: 354 GNMSQLQALDLSLNHIVG---------------------EIPKELGKLNSLTKLILRGNQ 392
             +  +  + LS N +V                      +I   L ++  L  LIL  N+
Sbjct: 378 HFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNR 437

Query: 393 LTGRLPTEI-GSLIELEYLDFSANKFNNSV-----PESLGNLLKLHYLGLSNNQFVLELP 446
            +     +       LE L    N    +       +    L  L  L L++N      P
Sbjct: 438 FSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPP 497

Query: 447 KELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSII 506
                L  L  L  + N     +        +LE L++S N L    P+ F     LS++
Sbjct: 498 GVFSHLTALRGLSLNSNRLT-VLSHND-LPANLEILDISRNQLLAPNPDVF---VSLSVL 552

Query: 507 DISDNQLQ 514
           DI+ N+  
Sbjct: 553 DITHNKFI 560

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  162 bits (412), Expect = 6e-43
 Identities = 92/492 (18%), Positives = 176/492 (35%), Gaps = 39/492 (7%)

Query: 53  VTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQI-GNLTKLSYISLDSNQ 111
           + ++ L    ++  +      +   L  L L  +    TI      +L  L ++ L  N 
Sbjct: 28  MKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRI-NTIEGDAFYSLGSLEHLDLSDNH 85

Query: 112 LSGKIPAEV-GLLTHLKVLSFQFNELDG-SIPPEVCQLSSIEELFLYSNHLNGSLPP-FL 168
           LS  + +   G L+ LK L+   N      +      L++++ L + +      +     
Sbjct: 86  LS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF 144

Query: 169 GNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLS------FLPLSVGNLTNLKSLGLM 222
             L+++  L I   SL      ++ +++ +  L L        L +    L++++ L L 
Sbjct: 145 AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELR 204

Query: 223 DNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLR 282
           D +L+     S          +    F G +  +     LL+         +    +   
Sbjct: 205 DTNLA-RFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263

Query: 283 NCTSLIRVRLNGNNLTGNISEALGL-YPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVS 341
           N            + +  +SE   +    +  + + +   + ++S+ +    K+  + V 
Sbjct: 264 NGLGDFN-----PSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVE 318

Query: 342 MNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKE---LGKLNSLTKLILRGNQLTGRLP 398
            + +         ++  L+ LDLS N +V E  K     G   SL  L+L  N L   + 
Sbjct: 319 NSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQ 377

Query: 399 TEIG---SLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQL 455
                  +L  L  LD S N F+  +P+S     K+ +L LS+      +   +     L
Sbjct: 378 KTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTL 433

Query: 456 SELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQG 515
             LD S+N            L  L++L +S N L  L          L ++ IS NQL+ 
Sbjct: 434 EVLDVSNNNLD-SFSL---FLPRLQELYISRNKLKTLPDASL--FPVLLVMKISRNQLKS 487

Query: 516 PVPNSTAFRNAP 527
                  F    
Sbjct: 488 VPDG--IFDRLT 497

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  141 bits (356), Expect = 2e-35
 Identities = 67/467 (14%), Positives = 134/467 (28%), Gaps = 88/467 (18%)

Query: 54  TNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLS 113
             + + N      +R   F+    L  L++            + ++  + +++L  ++ +
Sbjct: 126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185

Query: 114 GKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSN 173
             +     +L+ ++ L  +   L       +        +   +   +         L  
Sbjct: 186 FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLK 245

Query: 174 IVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPS 233
           ++R  +  + +     T  G   F          L       ++ L +   +L   +   
Sbjct: 246 LLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTV 305

Query: 234 FGN-SMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRL 292
           +     +  +T+  +                    V  +  Q                  
Sbjct: 306 YSLLEKVKRITVENSKVFL----------------VPCSFSQHL---------------- 333

Query: 293 NGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNW---GKCPKLGTLNVSMNNIT--G 347
                            +L F+DLS N    E   N    G  P L TL +S N++    
Sbjct: 334 ----------------KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQ 377

Query: 348 GIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIEL 407
                +  +  L +LD+S N     +P        +  L L    +   + T I     L
Sbjct: 378 KTGEILLTLKNLTSLDISRNTF-HPMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTL 433

Query: 408 EYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGG 467
           E LD S N   +S    L  L +L+   +S N              +L  L  +      
Sbjct: 434 EVLDVSNNNL-DSFSLFLPRLQELY---ISRN--------------KLKTLPDASL---- 471

Query: 468 EIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQ 514
                      L  + +S N L  +    F+ +  L  I +  N   
Sbjct: 472 --------FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  122 bits (308), Expect = 2e-29
 Identities = 53/351 (15%), Positives = 114/351 (32%), Gaps = 26/351 (7%)

Query: 201 LDLSFLPLS---VGNLTNLKSLGLMDNHLSGSIPPSFGN-SMLTWLTLSGNHFTGYLPHN 256
            D      +    G    +KSL L  N ++          + L  L L  +     +  +
Sbjct: 10  CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGD 68

Query: 257 ICRG-GLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTG-NISEALGLYPNLTFI 314
                G LE   +S+NH            +SL  + L GN      ++       NL  +
Sbjct: 69  AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128

Query: 315 DLSRNNFYGEISSNW-GKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEI 373
            +     + EI          L  L +   ++     + + ++  +  L L L+     +
Sbjct: 129 RIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLL 188

Query: 374 PKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHY 433
                 L+S+  L LR   L     + +        +   A + +    ES   LLKL  
Sbjct: 189 EIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLR 248

Query: 434 LGLSNNQFVLELPKELE------------------KLVQLSELDASHNLFGGEIPFQICS 475
             L  ++   +                        + V +  L         ++      
Sbjct: 249 YILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSL 308

Query: 476 LKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNSTAFRNA 526
           L+ ++++ + ++ +  +  +  + +  L  +D+S+N +      ++A + A
Sbjct: 309 LEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGA 359

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 94.8 bits (236), Expect = 2e-20
 Identities = 47/280 (16%), Positives = 94/280 (33%), Gaps = 40/280 (14%)

Query: 52  RVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQ 111
            +  +   N   S  + +        +  L +     F  + +    L K+  I++++++
Sbjct: 262 TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK 321

Query: 112 LSGKIPAEVG-LLTHLKVLSFQFNEL-DGSIPPEVC--QLSSIEELFLYSNHLN--GSLP 165
           +   +P      L  L+ L    N + +  +    C     S++ L L  NHL       
Sbjct: 322 VF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTG 380

Query: 166 PFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSV---GNLTNLKSLGLM 222
             L  L N+  L I+ N+    +  +    + +  L+LS   + V        L+ L + 
Sbjct: 381 EILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVS 439

Query: 223 DNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLR 282
           +N+L  S         L  L +S N                            T+P++  
Sbjct: 440 NNNLD-SFSLFLPR--LQELYISRNKLK-------------------------TLPDAS- 470

Query: 283 NCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFY 322
               L+ ++++ N L            +L  I L  N + 
Sbjct: 471 LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  154 bits (390), Expect = 2e-40
 Identities = 67/439 (15%), Positives = 130/439 (29%), Gaps = 46/439 (10%)

Query: 92  IPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIE 151
           I     N  +     +  + L   + +      ++K L    N L      ++   + +E
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 152 ELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLS---FLPL 208
            L L SN L         +LS +  L +NNN      +  +     +  L  +      +
Sbjct: 62  LLNLSSNVLY-ETLDL-ESLSTLRTLDLNNNY-----VQELLVGPSIETLHAANNNISRV 114

Query: 209 SVGNLTNLKSLGLMDNHLSGSIPPSFGN-SMLTWLTLSGNHFTGYLPHNICRGGLLEAFI 267
           S       K++ L +N ++       G  S + +L L  N                    
Sbjct: 115 SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID----------------- 157

Query: 268 VSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISS 327
                      E   +  +L  + L  N +  ++   +     L  +DLS N     +  
Sbjct: 158 ------TVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVF-AKLKTLDLSSNKL-AFMGP 208

Query: 328 NWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIV-GEIPKELGKLNSLTKL 386
            +     +  +++  N +   I + +     L+  DL  N    G +     K   +  +
Sbjct: 209 EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267

Query: 387 ILRGNQ-LTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNL--LKLHYLGLSNNQFVL 443
             +  + LTG+   E        Y  +          + L  L   +   L    ++   
Sbjct: 268 AKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSET-E 326

Query: 444 ELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGM--- 500
            L  E E   +  E+DA    +   I       ++   L      L   + N        
Sbjct: 327 RLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAEL 386

Query: 501 HGLSIIDISDNQLQGPVPN 519
            G     +   +LQ     
Sbjct: 387 DGTLQQAVGQIELQHATEE 405

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  146 bits (370), Expect = 9e-38
 Identities = 59/392 (15%), Positives = 125/392 (31%), Gaps = 47/392 (11%)

Query: 163 SLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLS------FLPLSVGNLTNL 216
           ++     N +      + ++SL  ++ +   +   + ELDLS           +   T L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 217 KSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGT 276
           + L L  N L          S L  L L+ N+        +  G  +E    + N+    
Sbjct: 61  ELLNLSSNVLY-ETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRV 114

Query: 277 IPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYG-EISSNWGKCPKL 335
                +   ++    L  N +T       G    + ++DL  N       +        L
Sbjct: 115 SCSRGQGKKNI---YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 336 GTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTG 395
             LN+  N I   +  ++   ++L+ LDLS N +   +  E      +T + LR N+L  
Sbjct: 172 EHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV- 227

Query: 396 RLPTEIGSLIELEYLDFSANKFN-NSVPESLGNLLKLHYLGLSNNQFVLELPKE------ 448
            +   +     LE+ D   N F+  ++ +      ++  +     + +    +E      
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287

Query: 449 ----------------LEKLVQLSELDASHNLFGG----EIPFQICSLKSLEKLNLSHNN 488
                            ++L+ L   + +     G     +  +  +     +++     
Sbjct: 288 LGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQ 347

Query: 489 LSGLIPNCFEGMHGLSIIDISDNQLQGPVPNS 520
              +I            ++     L   V N 
Sbjct: 348 YRTVIDQVTLRKQAKITLEQKKKALDEQVSNG 379

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  143 bits (363), Expect = 7e-37
 Identities = 63/454 (13%), Positives = 127/454 (27%), Gaps = 30/454 (6%)

Query: 52  RVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQ 111
           R     + ++ L          S   +  LDLS N       + +   TKL  ++L SN 
Sbjct: 11  RYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 112 LSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNL 171
           L      ++  L+ L+ L    N +   +        SIE L   +N+++  +       
Sbjct: 70  LYE--TLDLESLSTLRTLDLNNNYV-QELLV----GPSIETLHAANNNIS-RVSC--SRG 119

Query: 172 SNIVRLYINNNSLSGSILTNIGNLKFLFELDLSF-------LPLSVGNLTNLKSLGLMDN 224
                +Y+ NN ++     + G    +  LDL               +   L+ L L  N
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 225 HLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNC 284
            +   +      + L  L LS N    ++         +    +  N     I ++LR  
Sbjct: 180 FIY-DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFS 236

Query: 285 TSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNN 344
            +L    L GN              N     +++         N  +C      +     
Sbjct: 237 QNLEHFDLRGNGFHCGTLRDFFS-KNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYC 295

Query: 345 ITGGIPREIGNMSQLQALDLSLNHI----VGEIPKELGKLNSLTKLILRGNQLTGRLPTE 400
                      +  L+  + +L          +  E        ++     Q    +   
Sbjct: 296 CEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQV 355

Query: 401 IGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQ--FVLELPKELEKLVQLSEL 458
                    L+      +  V        +L            +    +E   L  L  +
Sbjct: 356 TLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAI 415

Query: 459 DASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGL 492
              +      +  Q     ++   ++  +  + L
Sbjct: 416 VKRYEE--MYVEQQSVQNNAIRDWDMYQHKETQL 447

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  116 bits (292), Expect = 1e-27
 Identities = 48/398 (12%), Positives = 109/398 (27%), Gaps = 31/398 (7%)

Query: 67  LRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSG-KIPAEVGLLTH 125
           +   S S      ++ L+ N          G  +++ Y+ L  N++              
Sbjct: 111 ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 126 LKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLS 185
           L+ L+ Q+N +   +  +V   + ++ L L SN L   + P   + + +  + + NN   
Sbjct: 171 LEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNK-- 225

Query: 186 GSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLS 245
                            L  +  ++    NL+   L  N         F +      T++
Sbjct: 226 -----------------LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268

Query: 246 GNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGN----I 301
                     N     +           +           +L R      +  G+    +
Sbjct: 269 KQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERL 328

Query: 302 SEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQA 361
                       ID  +  +   I     +     TL      +   +       ++L  
Sbjct: 329 ECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDG 388

Query: 362 LDLSLNHIVG--EIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNN 419
                   +      +E   L  L  ++ R  ++   +  +      +   D   +K   
Sbjct: 389 TLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMY--VEQQSVQNNAIRDWDMYQHKETQ 446

Query: 420 SVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSE 457
              E+           L+       L + + +   L+ 
Sbjct: 447 LAEENARLKKLNGEADLALASANATLQELVVREQNLAS 484

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  148 bits (374), Expect = 4e-38
 Identities = 91/466 (19%), Positives = 161/466 (34%), Gaps = 40/466 (8%)

Query: 80  HLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEV-GLLTHLKVLSFQFNELDG 138
            L++S N       S I +L+KL  + +  N++   +   V      L+ L    N+L  
Sbjct: 25  ILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKL-V 82

Query: 139 SIPPEVCQLSSIEELFLYSNHLNGSLPP--FLGNLSNIVRLYINNNSLSGSILTNIGNLK 196
            I        +++ L L  N  + +LP     GN+S +  L ++   L  S +  I +L 
Sbjct: 83  KISCH--PTVNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLN 139

Query: 197 FL-FELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSF----GNSMLTWLTLSGNHFTG 251
                L L        +   L+       H+       F      S+ T   L  ++   
Sbjct: 140 ISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKC 199

Query: 252 YLPHNICRGGLLEAFIVSENHFQGTIPES--------------LRNCTSLIRVRLNGNNL 297
            L  N C   L     +  N     +  +              L   T++    ++   L
Sbjct: 200 VLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKL 259

Query: 298 TGNISEALGLYPN-----LTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPRE 352
            G +      Y       L+   +  + F    S  +     +   N +++         
Sbjct: 260 QGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC 319

Query: 353 IGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIG---SLIELEY 409
              +S    LD S N +   + +  G L  L  LIL+ NQL   L         +  L+ 
Sbjct: 320 PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQ 378

Query: 410 LDFSANKFNNSVPESL-GNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGE 468
           LD S N  +    +        L  L +S+N     + + L    ++  LD   N     
Sbjct: 379 LDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKI-KS 435

Query: 469 IPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQ 514
           IP Q+  L++L++LN++ N L  +    F+ +  L  I +  N   
Sbjct: 436 IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  102 bits (256), Expect = 4e-23
 Identities = 67/423 (15%), Positives = 137/423 (32%), Gaps = 58/423 (13%)

Query: 72  FSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSF 131
           F +  QL  L LS                        +  L       +  L   KVL  
Sbjct: 111 FGNMSQLKFLGLS------------------------TTHLEKSSVLPIAHLNISKVLLV 146

Query: 132 QFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSG-SILT 190
                     PE      +++    S H+          + ++    + N  LS    + 
Sbjct: 147 LGETYGEKEDPE-----GLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVL 201

Query: 191 NIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFT 250
                 +   +          +   L ++    N     I     ++ + + ++S     
Sbjct: 202 EDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFI-RILQLVWHTTVWYFSISNVKLQ 260

Query: 251 GYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPN 310
           G L                          S  +  +L   ++  +      S    ++ N
Sbjct: 261 GQLDFR-------------------DFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSN 301

Query: 311 LTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHI- 369
           +   + + +           K      L+ S N +T  +    G++++L+ L L +N + 
Sbjct: 302 MNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK 361

Query: 370 -VGEIPKELGKLNSLTKLILRGNQLTGRLPTEI-GSLIELEYLDFSANKFNNSVPESLGN 427
            + +I +   ++ SL +L +  N ++             L  L+ S+N   +++   L  
Sbjct: 362 ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL-- 419

Query: 428 LLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQIC-SLKSLEKLNLSH 486
             ++  L L +N+    +PK++ KL  L EL+ + N     +P  I   L SL+K+ L  
Sbjct: 420 PPRIKVLDLHSNKI-KSIPKQVVKLEALQELNVASNQL-KSVPDGIFDRLTSLQKIWLHT 477

Query: 487 NNL 489
           N  
Sbjct: 478 NPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  100 bits (250), Expect = 3e-22
 Identities = 72/422 (17%), Positives = 120/422 (28%), Gaps = 41/422 (9%)

Query: 107 LDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQ-LSSIEELFLYSNHLNGSLP 165
              N L   +P    L     +L+   N +   +       LS +  L +  N +     
Sbjct: 7   RSKNGLI-HVPK--DLSQKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDI 62

Query: 166 PFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNH 225
                   +  L +++N L                       +S     NLK L L  N 
Sbjct: 63  SVFKFNQELEYLDLSHNKLVK---------------------ISCHPTVNLKHLDLSFNA 101

Query: 226 LSGSIPPS--FGN-SMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTI-PESL 281
              ++P    FGN S L +L LS  H        I    + +  +V    +     PE L
Sbjct: 102 FD-ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGL 160

Query: 282 RNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVS 341
           ++        L+    T      +      T  +L  +N    +  N           + 
Sbjct: 161 QD---FNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQ 217

Query: 342 MNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEI 401
            N     +       +       S   I+  +        S++ + L+G           
Sbjct: 218 TNPKLSNLTLNNIETT-----WNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSG 272

Query: 402 GSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDAS 461
            SL  L      ++ F             ++    + +   +       K+     LD S
Sbjct: 273 TSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFS 332

Query: 462 HNLFGGEIPFQICSLKSLEKLNLSHNNLSGL--IPNCFEGMHGLSIIDISDNQLQGPVPN 519
           +NL    +      L  LE L L  N L  L  I      M  L  +DIS N +      
Sbjct: 333 NNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK 392

Query: 520 ST 521
             
Sbjct: 393 GD 394

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 83.8 bits (207), Expect = 5e-17
 Identities = 61/379 (16%), Positives = 112/379 (29%), Gaps = 52/379 (13%)

Query: 172 SNIVRLYINNNSLSGSILTNIGNLKFLFELDLSF-----LPLSV-GNLTNLKSLGLMDNH 225
                L I+ N +S    ++I +L  L  L +S      L +SV      L+ L L  N 
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 226 LSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCT 285
           L         N  L  L LS N F   LP     G +                      +
Sbjct: 81  LVKISCHPTVN--LKHLDLSFNAFD-ALPICKEFGNM----------------------S 115

Query: 286 SLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNI 345
            L  + L+  +L  +    +        + +    +  +            T ++ +   
Sbjct: 116 QLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDP--EGLQDFNTESLHIVFP 173

Query: 346 TGGIPREIGNMSQLQALDLSLNHIVG-----------EIPKELGKLNSLTKLILRGNQLT 394
           T      I ++S     +L L++I              I  +L     L+ L L   + T
Sbjct: 174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETT 233

Query: 395 GRLPTEIGSLI---ELEYLDFSANKFN-----NSVPESLGNLLKLHYLGLSNNQFVLELP 446
                 I  L+    + Y   S  K            S  +L  L    + ++ F     
Sbjct: 234 WNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQS 293

Query: 447 KELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSII 506
              E    ++  + + +            +     L+ S+N L+  +      +  L  +
Sbjct: 294 YIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETL 353

Query: 507 DISDNQLQGPVPNSTAFRN 525
            +  NQL+     +     
Sbjct: 354 ILQMNQLKELSKIAEMTTQ 372

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 77.6 bits (191), Expect = 4e-15
 Identities = 40/185 (21%), Positives = 66/185 (35%), Gaps = 29/185 (15%)

Query: 71  SFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGL---LTHLK 127
             S     +HLD S N    T+    G+LT+L  + L  NQL  ++     +   +  L+
Sbjct: 319 CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQ 377

Query: 128 VLSFQFNELDGSIPPEVC-QLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSG 186
            L    N +        C    S+  L + SN L  +   F      I  L +++N    
Sbjct: 378 QLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDT--IFRCLPPRIKVLDLHSN---- 431

Query: 187 SILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSM--LTWLTL 244
                           +  +P  V  L  L+ L +  N L  S+P    + +  L  + L
Sbjct: 432 ---------------KIKSIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWL 475

Query: 245 SGNHF 249
             N +
Sbjct: 476 HTNPW 480

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  145 bits (368), Expect = 8e-37
 Identities = 73/370 (19%), Positives = 125/370 (33%), Gaps = 42/370 (11%)

Query: 99  LTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSN 158
               + +++  + L+  +P  +    H+  L    N L  S+P    +L     L +  N
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPALPPEL---RTLEVSGN 91

Query: 159 HLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKS 218
            L  SLP     L  +         L  ++ + +  L  +F   L+ LP+       L+ 
Sbjct: 92  QLT-SLPVLPPGLLELSIFSNPLTHLP-ALPSGLCKLW-IFGNQLTSLPVL---PPGLQE 145

Query: 219 LGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIP 278
           L + DN L+ S+P       L  L    N  T  LP        L+   VS+N    ++P
Sbjct: 146 LSVSDNQLA-SLPALPSE--LCKLWAYNNQLT-SLPMLPSG---LQELSVSDNQLA-SLP 197

Query: 279 ESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTL 338
                   L       N LT ++         L  + +S  N    +     +   L  L
Sbjct: 198 TLPSELYKL---WAYNNRLT-SLPALPS---GLKELIVS-GNRLTSLPVLPSE---LKEL 246

Query: 339 NVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLP 398
            VS N +T  +P        L +L +  N +   +P+ L  L+S T + L GN L+ R  
Sbjct: 247 MVSGNRLTS-LPMLPSG---LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 301

Query: 399 TEIGSLIELEYLD---FSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQL 455
             +  +             +    S P     L       L   +     P   ++    
Sbjct: 302 QALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPARE--GEPAPADRWHMF 359

Query: 456 SELDASHNLF 465
            + D +    
Sbjct: 360 GQEDNADAFS 369

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  143 bits (363), Expect = 3e-36
 Identities = 76/386 (19%), Positives = 127/386 (32%), Gaps = 57/386 (14%)

Query: 143 EVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELD 202
             C  +    L +  + L  +LP  L    +I  L I +N+L+ S+      L+    L+
Sbjct: 35  RACLNNGNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLT-SLPALPPELR---TLE 87

Query: 203 LSF-----LPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNI 257
           +S      LP+    L  L        HL  ++P       L  L + GN  T  LP   
Sbjct: 88  VSGNQLTSLPVLPPGLLELSIFSNPLTHLP-ALPSG-----LCKLWIFGNQLT-SLPVLP 140

Query: 258 CRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLS 317
                L+   VS+N    ++P        L       N LT ++         L  + +S
Sbjct: 141 ---PGLQELSVSDNQLA-SLPALPSELCKL---WAYNNQLT-SLPMLPS---GLQELSVS 189

Query: 318 RNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKEL 377
            N     + +      +L  L    N +T  +P        L+ L +S N +   +P   
Sbjct: 190 DNQL-ASLPTLPS---ELYKLWAYNNRLT-SLPALPSG---LKELIVSGNRL-TSLPVLP 240

Query: 378 GKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLS 437
                L +L++ GN+LT  LP        L  L    N+    +PESL +L     + L 
Sbjct: 241 S---ELKELMVSGNRLT-SLPMLPSG---LLSLSVYRNQL-TRLPESLIHLSSETTVNLE 292

Query: 438 NNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCF 497
            N    E   +  + +  +   +   +                   L       L+P   
Sbjct: 293 GNPLS-ERTLQALREITSAPGYSGPIIRFDMAGASAPRETR----ALHLAAADWLVPARE 347

Query: 498 EGMHGLSIIDISDNQLQGPVPNSTAF 523
                     +   +      N+ AF
Sbjct: 348 GEPAPADRWHMFGQE-----DNADAF 368

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  141 bits (358), Expect = 2e-35
 Identities = 72/382 (18%), Positives = 116/382 (30%), Gaps = 85/382 (22%)

Query: 122 LLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINN 181
           L     VL+   + L  ++P  +   + I  L +  N+L  SLP     L     L ++ 
Sbjct: 38  LNNGNAVLNVGESGL-TTLPDCL--PAHITTLVIPDNNLT-SLPALPPELRT---LEVSG 90

Query: 182 NSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTW 241
           N L+ S+      L  L         L     + L  L +  N L+ S+P       L  
Sbjct: 91  NQLT-SLPVLPPGLLELSIFSNPLTHLPA-LPSGLCKLWIFGNQLT-SLPVLPPG--LQE 145

Query: 242 LTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNI 301
           L++S N                            ++P        L       N LT ++
Sbjct: 146 LSVSDNQLA-------------------------SLPALPSELCKL---WAYNNQLT-SL 176

Query: 302 SEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQA 361
                    L                          L+VS N +   +P     + +L A
Sbjct: 177 PMLPS---GLQ------------------------ELSVSDNQLAS-LPTLPSELYKLWA 208

Query: 362 LDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSV 421
            +  L      +P        L +LI+ GN+LT  LP     L   + L  S N+   S+
Sbjct: 209 YNNRLT----SLPALPS---GLKELIVSGNRLT-SLPVLPSEL---KELMVSGNRLT-SL 256

Query: 422 PESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEK 481
           P     LL L    +  NQ    LP+ L  L   + ++   N         +  + S   
Sbjct: 257 PMLPSGLLSLS---VYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPG 312

Query: 482 LNLSHNNLSGLIPNCFEGMHGL 503
            +           +       L
Sbjct: 313 YSGPIIRFDMAGASAPRETRAL 334

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  126 bits (318), Expect = 1e-30
 Identities = 74/334 (22%), Positives = 119/334 (35%), Gaps = 47/334 (14%)

Query: 73  SSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQ 132
           +  P+L  L++S N    ++P     L +LS  S     L         L + L  L   
Sbjct: 78  ALPPELRTLEVSGN-QLTSLPVLPPGLLELSIFSNPLTHLP-------ALPSGLCKLWIF 129

Query: 133 FNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNI 192
            N+L  S+P        ++EL +  N L  SLP     L     L+  NN L+ S+    
Sbjct: 130 GNQL-TSLPVL---PPGLQELSVSDNQLA-SLPALPSELCK---LWAYNNQLT-SLPMLP 180

Query: 193 GNLKFLFELDLSF-----LPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGN 247
             L+   EL +S      LP     L  L +    +N L+ S+P       L  L +SGN
Sbjct: 181 SGLQ---ELSVSDNQLASLPTLPSELYKLWAY---NNRLT-SLPALPSG--LKELIVSGN 231

Query: 248 HFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGL 307
             T  LP        L+  +VS N    ++P       SL    +  N LT  + E+L  
Sbjct: 232 RLT-SLPVLPSE---LKELMVSGNRLT-SLPMLPSGLLSL---SVYRNQLT-RLPESLIH 282

Query: 308 YPNLTFIDLSRNNFYGEISSNWGKCPKLGTLN---VSMNNITGGIPREIGNMSQLQALDL 364
             + T ++L  N           +       +   +  +      PRE   +    A  L
Sbjct: 283 LSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWL 342

Query: 365 SLNHIVG----EIPKELGKLNSLTKLILRGNQLT 394
                      +     G+ ++     L  ++L+
Sbjct: 343 VPAREGEPAPADRWHMFGQEDNADAFSLFLDRLS 376

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  140 bits (356), Expect = 1e-36
 Identities = 79/409 (19%), Positives = 140/409 (34%), Gaps = 54/409 (13%)

Query: 139 SIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNI-GNLKF 197
            I   +       ++ +     +         L+N   +   N+++   +   +  + + 
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQ 70

Query: 198 LFELDLSFLPLSV------GNLTNLKSLGLMDNHLSGSIPPSFGNSM--LTWLTLSGNHF 249
           +  L+L+ L +             ++ L +  N +   +PP    ++  LT L L  N  
Sbjct: 71  VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDL 129

Query: 250 TGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYP 309
           +  LP  I                         N   L  + ++ NNL     +      
Sbjct: 130 S-SLPRGI-----------------------FHNTPKLTTLSMSNNNLERIEDDTFQATT 165

Query: 310 NLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHI 369
           +L  + LS N     +       P L   NVS N ++      +     ++ LD S N I
Sbjct: 166 SLQNLQLSSNRL-THVDL--SLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSI 217

Query: 370 VGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLL 429
              +   +     LT L L+ N LT      + +   L  +D S N+    +      + 
Sbjct: 218 N-VVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 272

Query: 430 KLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNL 489
           +L  L +SNN+ V  L    + +  L  LD SHN     +         LE L L HN++
Sbjct: 273 RLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI 330

Query: 490 SGLIPNCFEGMHGLSIIDISDNQLQGPVPNSTAFRNAPVEALEGNKELC 538
             L  +     H L  + +S N           FRN    A++   + C
Sbjct: 331 VTLKLSTH---HTLKNLTLSHNDWD-CNSLRALFRNVARPAVDDADQHC 375

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  134 bits (338), Expect = 3e-34
 Identities = 76/384 (19%), Positives = 148/384 (38%), Gaps = 36/384 (9%)

Query: 69  DFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEV-GLLTHLK 127
           D +         + + +         +   L     ++  ++ +  K+PA +      ++
Sbjct: 14  DSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVE 72

Query: 128 VLSFQFNELDGSIPPEV-CQLSSIEELFLYSNHLNGSLPP-FLGNLSNIVRLYINNNSLS 185
           +L+    +++  I         +I++L++  N +   LPP    N+  +  L +  N LS
Sbjct: 73  LLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS 130

Query: 186 GSILTNI-GNLKFLFELDLSF-----LPLSV-GNLTNLKSLGLMDNHLSGSIPPS-FGNS 237
            S+   I  N   L  L +S      +        T+L++L L  N L+  +  S   + 
Sbjct: 131 -SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIPS- 187

Query: 238 MLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNL 297
            L    +S N  +      +     +E    S N     +   +     L  ++L  NNL
Sbjct: 188 -LFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNL 238

Query: 298 TGNISEALGLYPNLTFIDLSRNNFYGEISSN-WGKCPKLGTLNVSMNNITGGIPREIGNM 356
           T   +  L  YP L  +DLS N    +I  + + K  +L  L +S N +   +      +
Sbjct: 239 TD--TAWLLNYPGLVEVDLSYNEL-EKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPI 294

Query: 357 SQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANK 416
             L+ LDLS NH++  + +   + + L  L L  N +   L   + +   L+ L  S N 
Sbjct: 295 PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHND 350

Query: 417 FN-NSVPESLGNLLKLHYLGLSNN 439
           ++ NS+     N+ +        +
Sbjct: 351 WDCNSLRALFRNVARPAVDDADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  112 bits (282), Expect = 8e-27
 Identities = 61/344 (17%), Positives = 119/344 (34%), Gaps = 49/344 (14%)

Query: 66  TLRDFSFSSFPQLVHLDLSLNGFFGTIPSQI-GNLTKLSYISLDSNQLSGKIPAEV-GLL 123
            +  ++F+    +  L +  N     +P  +  N+  L+ + L+ N LS  +P  +    
Sbjct: 83  EIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNT 140

Query: 124 THLKVLSFQFNELDGSIPPEVCQ-LSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNN 182
             L  LS   N L+  I  +  Q  +S++ L L SN L   +      + ++    ++ N
Sbjct: 141 PKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDL--SLIPSLFHANVSYN 196

Query: 183 SLSGSILTNIGNLKFLFELDLSFLPLSV---GNLTNLKSLGLMDNHLSGSIPPSFGNSML 239
                 L+ +     + ELD S   ++V        L  L L  N+L+           L
Sbjct: 197 L-----LSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLT-DTAWLLNYPGL 250

Query: 240 TWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTG 299
             + LS N     +                                 L R+ ++ N L  
Sbjct: 251 VEVDLSYNELE-KIM-----------------------YHPFVKMQRLERLYISNNRLV- 285

Query: 300 NISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQL 359
            ++      P L  +DLS N+    +  N  +  +L  L +  N+I   +   +     L
Sbjct: 286 ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTL 341

Query: 360 QALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGS 403
           + L LS N       + L    ++ +  +       ++  ++  
Sbjct: 342 KNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQHCKIDYQLEH 383

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  108 bits (272), Expect = 1e-25
 Identities = 52/318 (16%), Positives = 106/318 (33%), Gaps = 42/318 (13%)

Query: 200 ELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGN-SMLTWLTLSGNHFTGYLPHNIC 258
           + +   +  ++        + +                +    +T   +     LP    
Sbjct: 7   QPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLP---- 61

Query: 259 RGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSR 318
                                 L +   +  + LN   +    + A      +  + +  
Sbjct: 62  -------------------AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 102

Query: 319 NNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREI-GNMSQLQALDLSLNHIVGEIPKE- 376
           N         +   P L  L +  N+++  +PR I  N  +L  L +S N++   I  + 
Sbjct: 103 NAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLE-RIEDDT 160

Query: 377 LGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGL 436
                SL  L L  N+LT  +   +  +  L + + S N        +L   + +  L  
Sbjct: 161 FQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLL-----STLAIPIAVEELDA 212

Query: 437 SNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNC 496
           S+N     +   +   V+L+ L   HN           +   L +++LS+N L  ++ + 
Sbjct: 213 SHNSIN-VVRGPV--NVELTILKLQHNNLTDTAWLL--NYPGLVEVDLSYNELEKIMYHP 267

Query: 497 FEGMHGLSIIDISDNQLQ 514
           F  M  L  + IS+N+L 
Sbjct: 268 FVKMQRLERLYISNNRLV 285

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 51.6 bits (124), Expect = 5e-07
 Identities = 11/102 (10%), Positives = 30/102 (29%)

Query: 412 FSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPF 471
                    +  +L      + + +      +    E   L     +   ++        
Sbjct: 4   KPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAA 63

Query: 472 QICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQL 513
            + S + +E LNL+   +  +    F   H +  + +  N +
Sbjct: 64  LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI 105

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  136 bits (344), Expect = 1e-35
 Identities = 63/374 (16%), Positives = 118/374 (31%), Gaps = 61/374 (16%)

Query: 92  IPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIE 151
           I     N  +     +  + L   + +      ++K L    N L      ++   + +E
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 152 ELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVG 211
            L L SN L         +LS +  L +NNN +                         + 
Sbjct: 62  LLNLSSNVLY-ETLDL-ESLSTLRTLDLNNNYVQ-----------------------ELL 96

Query: 212 NLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSEN 271
              ++++L   +N++S  +  S G      + L+ N  T  L                  
Sbjct: 97  VGPSIETLHAANNNIS-RVSCSRGQG-KKNIYLANNKITM-LR----------------- 136

Query: 272 HFQGTIPESLRNCTSLIRVRLNGNNLTG-NISEALGLYPNLTFIDLSRNNFYGEISSNWG 330
                        + +  + L  N +   N +E       L  ++L  N  Y ++     
Sbjct: 137 ------DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV 189

Query: 331 KCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRG 390
              KL TL++S N +   +  E  + + +  + L  N +V  I K L    +L    LRG
Sbjct: 190 -FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRG 246

Query: 391 NQLT-GRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPK-E 448
           N    G L         ++ +     +    +         +  LG        +LP   
Sbjct: 247 NGFHCGTLRDFFSKNQRVQTVA---KQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPF 303

Query: 449 LEKLVQLSELDASH 462
            ++L+ L      H
Sbjct: 304 ADRLIALGHHHHHH 317

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  135 bits (341), Expect = 3e-35
 Identities = 53/304 (17%), Positives = 106/304 (34%), Gaps = 21/304 (6%)

Query: 163 SLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLS------FLPLSVGNLTNL 216
           ++     N +      + ++SL  ++ +   +   + ELDLS           +   T L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 217 KSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGT 276
           + L L  N L          S L  L L+ N+        +  G  +E    + N+    
Sbjct: 61  ELLNLSSNVLY-ETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRV 114

Query: 277 IPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYG-EISSNWGKCPKL 335
                +   ++    L  N +T       G    + ++DL  N       +        L
Sbjct: 115 SCSRGQGKKNI---YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 336 GTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTG 395
             LN+  N I   +  ++   ++L+ LDLS N +   +  E      +T + LR N+L  
Sbjct: 172 EHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV- 227

Query: 396 RLPTEIGSLIELEYLDFSANKFN-NSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQ 454
            +   +     LE+ D   N F+  ++ +      ++  +     + +    +E   +  
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287

Query: 455 LSEL 458
           L   
Sbjct: 288 LGHY 291

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  131 bits (332), Expect = 4e-34
 Identities = 45/253 (17%), Positives = 97/253 (38%), Gaps = 15/253 (5%)

Query: 263 LEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFY 322
            +   V+++  +  +    ++  ++  + L+GN L+   +  L  +  L  ++LS N  Y
Sbjct: 12  YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71

Query: 323 GEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNS 382
              + +      L TL+++ N +      E+     ++ L  + N+I   +         
Sbjct: 72  E--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI-SRVSCSR--GQG 121

Query: 383 LTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNN-SVPESLGNLLKLHYLGLSNNQF 441
              + L  N++T     + G    ++YLD   N+ +  +  E   +   L +L L  N  
Sbjct: 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181

Query: 442 VLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMH 501
             ++  ++    +L  LD S N     +  +  S   +  ++L +N L   I        
Sbjct: 182 Y-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQ 237

Query: 502 GLSIIDISDNQLQ 514
            L   D+  N   
Sbjct: 238 NLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  114 bits (288), Expect = 4e-28
 Identities = 56/326 (17%), Positives = 102/326 (31%), Gaps = 29/326 (8%)

Query: 52  RVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQ 111
           R     + ++ L          S   +  LDLS N       + +   TKL  ++L SN 
Sbjct: 11  RYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 112 LSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNL 171
           L      ++  L+ L+ L    N +      E+    SIE L   +N+++  +       
Sbjct: 70  LYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSC--SRG 119

Query: 172 SNIVRLYINNNSLSGSILTNIGNLKFLFELDLSF-------LPLSVGNLTNLKSLGLMDN 224
                +Y+ NN ++     + G    +  LDL               +   L+ L L  N
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 225 HLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNC 284
            +   +      + L  L LS N    ++         +    +  N     I ++LR  
Sbjct: 180 FIY-DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFS 236

Query: 285 TSLIRVRLNGNNLT-GNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMN 343
            +L    L GN    G + +       +  +           +      P LG       
Sbjct: 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYG---A 293

Query: 344 NITGGIPREIGNMSQLQALDLSLNHI 369
                +P         + + L  +H 
Sbjct: 294 YCCEDLPAPFA----DRLIALGHHHH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  113 bits (284), Expect = 1e-27
 Identities = 41/230 (17%), Positives = 87/230 (37%), Gaps = 22/230 (9%)

Query: 301 ISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQ 360
           I E            ++ ++    ++S       +  L++S N ++     ++   ++L+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 361 ALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLT--GRLPT--------------EIGSL 404
            L+LS N +  E   +L  L++L  L L  N +      P+                   
Sbjct: 62  LLNLSSNVLY-ETL-DLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRG 119

Query: 405 IELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFV-LELPKELEKLVQLSELDASHN 463
              + +  + NK         G   ++ YL L  N+   +   +       L  L+  +N
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 464 LFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQL 513
               ++  Q+     L+ L+LS N L+  +   F+   G++ I + +N+L
Sbjct: 180 FI-YDVKGQVV-FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKL 226

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  106 bits (268), Expect = 1e-25
 Identities = 29/167 (17%), Positives = 65/167 (38%), Gaps = 10/167 (5%)

Query: 348 GIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIEL 407
            I     N ++ +   ++ + +   +        ++ +L L GN L+     ++    +L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 408 EYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGG 467
           E L+ S+N         L +L  L  L L+NN       +EL     +  L A++N    
Sbjct: 61  ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNI-S 112

Query: 468 EIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQ 514
            +       +  + + L++N ++ L          +  +D+  N++ 
Sbjct: 113 RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  100 bits (252), Expect = 2e-23
 Identities = 28/183 (15%), Positives = 58/183 (31%), Gaps = 11/183 (6%)

Query: 333 PKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQ 392
            +     V+ +++   +     +   ++ LDLS N +      +L     L  L L  N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 393 LTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKL 452
           L      ++ SL  L  LD + N       + L     +  L  +NN     +       
Sbjct: 70  LYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVSCSR--G 119

Query: 453 VQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGL-IPNCFEGMHGLSIIDISDN 511
                +  ++N               ++ L+L  N +  +           L  +++  N
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 512 QLQ 514
            + 
Sbjct: 180 FIY 182

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  135 bits (340), Expect = 2e-33
 Identities = 79/409 (19%), Positives = 140/409 (34%), Gaps = 54/409 (13%)

Query: 139 SIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNI-GNLKF 197
            I   +       ++ +     +         L+N   +   N+++   +   +  + + 
Sbjct: 18  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQ 76

Query: 198 LFELDLSFLPLSV------GNLTNLKSLGLMDNHLSGSIPPSF--GNSMLTWLTLSGNHF 249
           +  L+L+ L +             ++ L +  N +   +PP       +LT L L  N  
Sbjct: 77  VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDL 135

Query: 250 TGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYP 309
           +  LP  I                         N   L  + ++ NNL     +      
Sbjct: 136 S-SLPRGI-----------------------FHNTPKLTTLSMSNNNLERIEDDTFQATT 171

Query: 310 NLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHI 369
           +L  + LS N     +  +    P L   NVS N ++      +     ++ LD S N I
Sbjct: 172 SLQNLQLSSNRL-THVDLSL--IPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSI 223

Query: 370 VGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLL 429
              +   +     LT L L+ N LT      + +   L  +D S N+    +      + 
Sbjct: 224 N-VVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 278

Query: 430 KLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNL 489
           +L  L +SNN+ V  L    + +  L  LD SHN     +         LE L L HN++
Sbjct: 279 RLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI 336

Query: 490 SGLIPNCFEGMHGLSIIDISDNQLQGPVPNSTAFRNAPVEALEGNKELC 538
             L  +     H L  + +S N           FRN    A++   + C
Sbjct: 337 VTLKLSTH---HTLKNLTLSHNDWD-CNSLRALFRNVARPAVDDADQHC 381

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  131 bits (331), Expect = 3e-32
 Identities = 79/398 (19%), Positives = 154/398 (38%), Gaps = 43/398 (10%)

Query: 79  VHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEV-GLLTHLKVLSFQFNELD 137
           VH+D+     +         L     ++  ++ +  K+PA +      +++L+    +++
Sbjct: 32  VHIDMQTQDVYFGFEDI--TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE 88

Query: 138 GSIPPEV-CQLSSIEELFLYSNHLNGSLPP-FLGNLSNIVRLYINNN---SLSGSILTNI 192
             I         +I++L++  N +   LPP    N+  +  L +  N   SL   I  N 
Sbjct: 89  -EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNT 146

Query: 193 GNLKFLFELDLSF-----LPLSV-GNLTNLKSLGLMDNHLSGSIPPS-FGNSMLTWLTLS 245
             L     L +S      +        T+L++L L  N L+  +  S   +  L    +S
Sbjct: 147 PKLT---TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIPS--LFHANVS 200

Query: 246 GNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEAL 305
            N  +      +     +E    S N     +   +     L  ++L  NNLT   +  L
Sbjct: 201 YNLLS-----TLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLTD--TAWL 250

Query: 306 GLYPNLTFIDLSRNNFYGEISSN-WGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDL 364
             YP L  +DLS N    +I  + + K  +L  L +S N +   +      +  L+ LDL
Sbjct: 251 LNYPGLVEVDLSYNEL-EKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDL 308

Query: 365 SLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPES 424
           S NH++  + +   + + L  L L  N +   L   + +   L+ L  S N ++ +   +
Sbjct: 309 SHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCNSLRA 364

Query: 425 LGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASH 462
           L     +    + +     ++  +LE  +   E D  +
Sbjct: 365 L--FRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPY 400

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  105 bits (264), Expect = 6e-24
 Identities = 52/316 (16%), Positives = 107/316 (33%), Gaps = 42/316 (13%)

Query: 202 DLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGN-SMLTWLTLSGNHFTGYLPHNICRG 260
           +   +  ++        + +                +    +T   +     LP      
Sbjct: 15  EYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLP------ 67

Query: 261 GLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNN 320
                               L +   +  + LN   +    + A      +  + +  N 
Sbjct: 68  -----------------AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA 110

Query: 321 FYGEISSNWGKCPKLGTLNVSMNNITGGIPREI-GNMSQLQALDLSLNHIVGEIPKE-LG 378
                   +   P L  L +  N+++  +PR I  N  +L  L +S N++   I  +   
Sbjct: 111 IRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQ 168

Query: 379 KLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSN 438
              SL  L L  N+LT  +   +  +  L + + S N        +L   + +  L  S+
Sbjct: 169 ATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLL-----STLAIPIAVEELDASH 220

Query: 439 NQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFE 498
           N     +   +   V+L+ L   HN    +    + +   L +++LS+N L  ++ + F 
Sbjct: 221 NSIN-VVRGPV--NVELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNELEKIMYHPFV 275

Query: 499 GMHGLSIIDISDNQLQ 514
            M  L  + IS+N+L 
Sbjct: 276 KMQRLERLYISNNRLV 291

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 84.6 bits (209), Expect = 3e-17
 Identities = 68/410 (16%), Positives = 139/410 (33%), Gaps = 43/410 (10%)

Query: 66  TLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTH 125
            + D +F +   L +L LS N     +   +  +  L + ++  N LS      + +   
Sbjct: 161 RIEDDTFQATTSLQNLQLSSNRL-THVD--LSLIPSLFHANVSYNLLS-----TLAIPIA 212

Query: 126 LKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLS 185
           ++ L    N ++  +   V     +  L L  N+L  +   +L N   +V + ++ N L 
Sbjct: 213 VEELDASHNSIN-VVRGPVNV--ELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELE 267

Query: 186 GSILTNIGNLKFLFELDLSF-----LPLSVGNLTNLKSLGLMDNHLSGSIPPS-FGNSML 239
             +      ++ L  L +S      L L    +  LK L L  NHL   +  +      L
Sbjct: 268 KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRL 326

Query: 240 TWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTG 299
             L L  N     L  +      L+   +S N +      +L    ++ R  ++  +   
Sbjct: 327 ENLYLDHNSIV-TLKLSTHHT--LKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQHC 381

Query: 300 NISEALG----------LYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGI 349
            I   L            Y +     ++  +   ++    G+C    T+N   +      
Sbjct: 382 KIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYIT 441

Query: 350 PREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEI-GSLIELE 408
            +    +   + L+  +N +  E+         LT   ++  QL   L  EI  +L    
Sbjct: 442 QQGGVPLQGNEQLEAEVNELRAEV-------QQLTNEQIQQEQLLQGLHAEIDTNLRRYR 494

Query: 409 YLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSEL 458
                  + ++++ +   +L +     L   Q         +K  +  E 
Sbjct: 495 LPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQ 544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.4 bits (102), Expect = 2e-04
 Identities = 7/85 (8%), Positives = 29/85 (34%)

Query: 430 KLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNL 489
           +  Y           +   L+      ++            F+  +L + + +   ++ +
Sbjct: 4   QQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM 63

Query: 490 SGLIPNCFEGMHGLSIIDISDNQLQ 514
             L     +    + +++++D Q++
Sbjct: 64  RKLPAALLDSFRQVELLNLNDLQIE 88

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  130 bits (330), Expect = 9e-33
 Identities = 77/445 (17%), Positives = 142/445 (31%), Gaps = 66/445 (14%)

Query: 75  FPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFN 134
           F   V     +     T       L  L+ +   ++ ++  +   +  LT L  L    N
Sbjct: 20  FASEVAAAFEMQA---TDTISEEQLATLTSLDCHNSSIT-DMT-GIEKLTGLTKLICTSN 74

Query: 135 ELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGN 194
            +  ++   + Q +++  L   SN L  +L   +  L+ +  L  + N L+   ++    
Sbjct: 75  NIT-TLD--LSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLTKLDVSQNPL 128

Query: 195 LKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLP 254
           L +L     +   + V + T L  L    N    +       + LT L  S N  T    
Sbjct: 129 LTYLNCARNTLTEIDVSHNTQLTELDCHLNKKI-TKLDVTPQTQLTTLDCSFNKITEL-- 185

Query: 255 HNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFI 314
                                     +     L R+  + NN+T  +   L     LTF+
Sbjct: 186 -------------------------DVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFL 217

Query: 315 DLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIP 374
           D S N        +     +L   + S+N +T  +   +  +S+L  L      ++ EI 
Sbjct: 218 DCSSNKL---TEIDVTPLTQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQTDLL-EID 270

Query: 375 KELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYL 434
             L     L      G +    L  ++    +L  LD  A          L    KL YL
Sbjct: 271 --LTHNTQLIYFQAEGCRKIKEL--DVTHNTQLYLLDCQAAGITEL---DLSQNPKLVYL 323

Query: 435 GLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIP 494
            L+N +   EL   +    +L  L   +     +    +  + +L     +      +  
Sbjct: 324 YLNNTELT-ELD--VSHNTKLKSLSCVNAHI-QDFS-SVGKIPALNNNFEAEGQTITMPK 378

Query: 495 -----NCFEGMHGLSIIDISDNQLQ 514
                N         ++D   N + 
Sbjct: 379 ETLTNNSLTIAVSPDLLDQFGNPMN 403

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  114 bits (288), Expect = 3e-27
 Identities = 66/368 (17%), Positives = 127/368 (34%), Gaps = 42/368 (11%)

Query: 67  LRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHL 126
           +     S    L +L    N     +   +  LTKL+Y++ D+N+L+     +V     L
Sbjct: 76  ITTLDLSQNTNLTYLACDSNKL-TNLD--VTPLTKLTYLNCDTNKLT---KLDVSQNPLL 129

Query: 127 KVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSG 186
             L+   N L   I   V   + + EL  + N     L   +   + +  L  + N ++ 
Sbjct: 130 TYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITE 184

Query: 187 SILTNIGNLKFLFELDLSFLPLS---VGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLT 243
               ++   K L  L+     ++   +     L  L    N L+  I  +   + LT+  
Sbjct: 185 L---DVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLT-EIDVT-PLTQLTYFD 239

Query: 244 LSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISE 303
            S N  T  L  +      L      +      I   L + T LI  +  G      +  
Sbjct: 240 CSVNPLT-ELDVSTLSK--LTTLHCIQTDLL-EID--LTHNTQLIYFQAEGCRKIKELD- 292

Query: 304 ALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALD 363
            +     L  +D            +  + PKL  L ++   +T  +   + + ++L++L 
Sbjct: 293 -VTHNTQLYLLDCQAAGI---TELDLSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLS 345

Query: 364 LSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPE 423
               HI  +    +GK+ +L        Q    +P E  +   L          +  + +
Sbjct: 346 CVNAHIQ-DFS-SVGKIPALNNNFEAEGQTI-TMPKETLTNNSLTIA------VSPDLLD 396

Query: 424 SLGNLLKL 431
             GN + +
Sbjct: 397 QFGNPMNI 404

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  114 bits (287), Expect = 4e-27
 Identities = 68/348 (19%), Positives = 114/348 (32%), Gaps = 40/348 (11%)

Query: 170 NLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLS----VGNLTNLKSLGLMDNH 225
           N ++ V       +        +  L     LD     ++    +  LT L  L    N+
Sbjct: 19  NFASEVAAAFEMQATDTISEEQLATLT---SLDCHNSSITDMTGIEKLTGLTKLICTSNN 75

Query: 226 LSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCT 285
           ++ ++  S  N+ LT+L    N  T  L         L       N     +  S     
Sbjct: 76  IT-TLDLS-QNTNLTYLACDSNKLTN-LDVTPLTK--LTYLNCDTNKLT-KLDVS--QNP 127

Query: 286 SLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNI 345
            L  +    N LT      +     LT +D   N    ++        +L TL+ S N I
Sbjct: 128 LLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLDV--TPQTQLTTLDCSFNKI 182

Query: 346 TGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLI 405
           T     ++     L  L+   N+I  ++   L +   LT L    N+LT  +   +  L 
Sbjct: 183 TEL---DVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT-EID--VTPLT 233

Query: 406 ELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLF 465
           +L Y D S N         +  L KL  L       + E+   L    QL    A     
Sbjct: 234 QLTYFDCSVNPLTE---LDVSTLSKLTTLHCIQTDLL-EID--LTHNTQLIYFQAEGCRK 287

Query: 466 GGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQL 513
             E+   +     L  L+     ++ L          L  + +++ +L
Sbjct: 288 IKELD--VTHNTQLYLLDCQAAGITELD---LSQNPKLVYLYLNNTEL 330

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 92.4 bits (230), Expect = 6e-20
 Identities = 57/324 (17%), Positives = 105/324 (32%), Gaps = 78/324 (24%)

Query: 194 NLKFLFELDLS---FLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFT 250
           N                +S   L  L SL   ++ ++  +      + LT L  + N+ T
Sbjct: 19  NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTGIEKLTGLTKLICTSNNIT 77

Query: 251 GYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPN 310
                                    T+   L   T+L  +  + N LT   +  +     
Sbjct: 78  -------------------------TLD--LSQNTNLTYLACDSNKLT---NLDVTPLTK 107

Query: 311 LTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIV 370
           LT+++   N        +  + P L  LN + N +T     ++ + +QL  LD  LN  +
Sbjct: 108 LTYLNCDTNKL---TKLDVSQNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKI 161

Query: 371 GEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLK 430
            ++   +     LT L    N++T     ++     L  L+   N         L   ++
Sbjct: 162 TKLD--VTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNITK---LDLNQNIQ 213

Query: 431 LHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLS 490
           L +L  S+N+              L+E+D             +  L  L   + S N L+
Sbjct: 214 LTFLDCSSNK--------------LTEID-------------VTPLTQLTYFDCSVNPLT 246

Query: 491 GLIPNCFEGMHGLSIIDISDNQLQ 514
            L  +       L+ +      L 
Sbjct: 247 ELDVSTLS---KLTTLHCIQTDLL 267

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 86.7 bits (215), Expect = 4e-18
 Identities = 57/347 (16%), Positives = 103/347 (29%), Gaps = 76/347 (21%)

Query: 55  NISLRNTGLSGT-LRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLS 113
           N  L     +   L +   S   QL  LD  LN         +   T+L+ +    N+++
Sbjct: 126 NPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKK--ITKLDVTPQTQLTTLDCSFNKIT 183

Query: 114 GKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSN 173
                +V     L  L+   N +   +   + Q   +  L   SN L   +   +  L+ 
Sbjct: 184 E---LDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT-EID--VTPLTQ 234

Query: 174 IVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPS 233
           +     + N L+   ++ +  L  L  +    L + + + T L             +  +
Sbjct: 235 LTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVT 294

Query: 234 FGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLN 293
             N+ L  L       T                          +   L     L+ + LN
Sbjct: 295 -HNTQLYLLDCQAAGIT-------------------------ELD--LSQNPKLVYLYLN 326

Query: 294 GNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREI 353
              LT               +D+S                KL +L+    +I       +
Sbjct: 327 NTELTE--------------LDVS-------------HNTKLKSLSCVNAHIQ-DFS-SV 357

Query: 354 GNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLI------LRGNQLT 394
           G +  L     +    +  +PKE    NSLT  +        GN + 
Sbjct: 358 GKIPALNNNFEAEGQTI-TMPKETLTNNSLTIAVSPDLLDQFGNPMN 403

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 79.0 bits (195), Expect = 1e-15
 Identities = 41/205 (20%), Positives = 76/205 (37%), Gaps = 19/205 (9%)

Query: 309 PNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNH 368
            N      +        + +  +   L +L+   ++IT  +   I  ++ L  L  + N+
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMT-GIEKLTGLTKLICTSNN 75

Query: 369 IVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNL 428
           I   +   L +  +LT L    N+LT     ++  L +L YL+   NK        +   
Sbjct: 76  IT-TLD--LSQNTNLTYLACDSNKLTN---LDVTPLTKLTYLNCDTNKLTKL---DVSQN 126

Query: 429 LKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNN 488
             L YL  + N    E+   +    QL+ELD   N    ++         L  L+ S N 
Sbjct: 127 PLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLDV--TPQTQLTTLDCSFNK 181

Query: 489 LSGLIPNCFEGMHGLSIIDISDNQL 513
           ++ L          L+ ++   N +
Sbjct: 182 ITELD---VSQNKLLNRLNCDTNNI 203

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  125 bits (316), Expect = 1e-30
 Identities = 78/375 (20%), Positives = 129/375 (34%), Gaps = 79/375 (21%)

Query: 75  FPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFN 134
             +   LDL  N        +  +   L  + L+ N +S                     
Sbjct: 31  PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS--------------------- 69

Query: 135 ELDGSIPPEVCQ-LSSIEELFLYSNHLNGSLPP-FLGNLSNIVRLYINNNSLSGSILTNI 192
               ++ P     L ++  L L SN L   +P      LSN+ +L I+ N +        
Sbjct: 70  ----AVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIV------- 117

Query: 193 GNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPS--FGNSMLTWLTLSGNHFT 250
                        L     +L NLKSL + DN L   I      G + L  LTL   + T
Sbjct: 118 -----------ILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLT 165

Query: 251 GYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPN 310
             +P                        E+L +   LI +RL   N+      +      
Sbjct: 166 -SIP-----------------------TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYR 201

Query: 311 LTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPRE-IGNMSQLQALDLSLNHI 369
           L  +++S   +   ++ N      L +L+++  N+T  +P   + ++  L+ L+LS N I
Sbjct: 202 LKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPI 260

Query: 370 VGEIPKE-LGKLNSLTKLILRGNQLTGRLPTEI-GSLIELEYLDFSANKFNNSVPESLGN 427
              I    L +L  L ++ L G QL   +       L  L  L+ S N+          +
Sbjct: 261 S-TIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHS 318

Query: 428 LLKLHYLGLSNNQFV 442
           +  L  L L +N   
Sbjct: 319 VGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  121 bits (305), Expect = 2e-29
 Identities = 82/413 (19%), Positives = 140/413 (33%), Gaps = 35/413 (8%)

Query: 142 PEVCQ-LSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFE 200
           P  C+  +    +  +      ++P  +   +    L +  N +         +   L E
Sbjct: 4   PPRCECSAQDRAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEE 60

Query: 201 LDLSFLPLSV------GNLTNLKSLGLMDNHLSGSIPPSF--GNSMLTWLTLSGNHFTGY 252
           L+L+   +S        NL NL++LGL  N L   IP     G S LT L +S N     
Sbjct: 61  LELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIV-I 118

Query: 253 LPHNICRG-GLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNL 311
           L   + +    L++  V +N        +     SL ++ L   NLT   +EAL     L
Sbjct: 119 LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGL 178

Query: 312 TFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVG 371
             + L   N       ++ +  +L  L +S       +         L +L ++  ++  
Sbjct: 179 IVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT- 237

Query: 372 EIPKE-LGKLNSLTKLILRGNQLTGRLPTEI-GSLIELEYLDFSANKFNNSVPESLGNLL 429
            +P   +  L  L  L L  N ++  +   +   L+ L+ +     +     P +   L 
Sbjct: 238 AVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLN 296

Query: 430 KLHYLGLSNNQFVLELPKEL-EKLVQLSELDASHNLFGGEIPFQI-CSLKSLEKLNLSHN 487
            L  L +S NQ    L + +   +  L  L    N      P    C L  +        
Sbjct: 297 YLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSN------PLACDCRLLWV-FRRRWRL 348

Query: 488 NLSGLIPNCF--EGMHGLSIIDISDNQLQG----PVPNSTAFRNAPVEALEGN 534
           N +   P C   E + G    D  D  L              +   V   EG+
Sbjct: 349 NFNRQQPTCATPEFVQGKEFKDFPDVLLPNYFTCRRARIRDRKAQQVFVDEGH 401

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 63.6 bits (155), Expect = 1e-10
 Identities = 31/148 (20%), Positives = 68/148 (45%), Gaps = 8/148 (5%)

Query: 66  TLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEV-GLLT 124
            +RD+SF    +L  L++S   +  T+         L+ +S+    L+  +P      L 
Sbjct: 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLV 248

Query: 125 HLKVLSFQFNELDGSIPPEV-CQLSSIEELFLYSNHLNGSLPPF-LGNLSNIVRLYINNN 182
           +L+ L+  +N +  +I   +  +L  ++E+ L    L   + P+    L+ +  L ++ N
Sbjct: 249 YLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGN 306

Query: 183 SLSGSILTNI-GNLKFLFELDLSFLPLS 209
            L+ ++  ++  ++  L  L L   PL+
Sbjct: 307 QLT-TLEESVFHSVGNLETLILDSNPLA 333

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  126 bits (317), Expect = 1e-30
 Identities = 80/460 (17%), Positives = 153/460 (33%), Gaps = 32/460 (6%)

Query: 66  TLRDFSFSSFPQLVHLDLSLNGFFGTIPSQI-GNLTKLSYISLDSNQLSGKIPAEVGLLT 124
            LR    S   +L  L LS N    ++   +      L Y+ +  N+L   I      + 
Sbjct: 66  ELRMPDISFLSELRVLRLSHNRI-RSLDFHVFLFNQDLEYLDVSHNRLQ-NISC--CPMA 121

Query: 125 HLKVLSFQFNELDGSIPP--EVCQLSSIEELFLYSNHL-NGSLPPFLGNLSNIVRLYINN 181
            L+ L   FN+ D  +P   E   L+ +  L L +       L P      + + L + +
Sbjct: 122 SLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVS 180

Query: 182 NSLSGSILTNIGNLKFLFELDLSFLPLSV------GNLTNLKSLGLMDNHLSGSIPPSFG 235
             + G    ++        L L F P S+       ++  L  L L +  L+        
Sbjct: 181 YHIKGGETESLQIPNTTV-LHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLM 239

Query: 236 NSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGN 295
             +                        ++ F          +  ++ N T      +   
Sbjct: 240 TFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYL--NIYNLT------ITER 291

Query: 296 NLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGN 355
                 + +     +L    +    F     + +    ++    +S+++          +
Sbjct: 292 IDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPS 351

Query: 356 MSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIG---SLIELEYLDF 412
            S    L+ + N     + +    L  L  LIL+ N L            ++  LE LD 
Sbjct: 352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDV 410

Query: 413 SANKFNNSVPESLGNLL-KLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPF 471
           S N  N+   +        +  L LS+N     + + L    ++  LD  +N     IP 
Sbjct: 411 SLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIM-SIPK 467

Query: 472 QICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDN 511
            +  L++L++LN++ N L  +    F+ +  L  I + DN
Sbjct: 468 DVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  109 bits (273), Expect = 4e-25
 Identities = 83/442 (18%), Positives = 153/442 (34%), Gaps = 43/442 (9%)

Query: 92  IPSQIGNLTKLSYISLDSNQLSGKIPAEV-GLLTHLKVLSFQFNELDGSIPPEVC-QLSS 149
           +P  +    +   +SL  N +S ++       L+ L+VL    N +  S+   V      
Sbjct: 46  VPKDL--PPRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQD 101

Query: 150 IEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSL-SGSILTNIGNLKFLFELDLS---- 204
           +E L +  N L  ++      ++++  L ++ N      +    GNL  L  L LS    
Sbjct: 102 LEYLDVSHNRL-QNISC--CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF 158

Query: 205 ----FLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRG 260
                LP++  +L+ +  L L+  H+ G    S      T L L  +  + +        
Sbjct: 159 RQLDLLPVAHLHLSCI-LLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSV 217

Query: 261 GLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNN 320
             L    +S         + L    S +       N+T            L  I+ +   
Sbjct: 218 NALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVT------------LQHIETTWKC 265

Query: 321 FYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGN-----MSQLQALDLSLNHIVGEIPK 375
                   W +   +  LN+    IT  I RE        +  L    +     +     
Sbjct: 266 SVKLFQFFWPRP--VEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEA 323

Query: 376 ELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLG 435
                  +   +L  +           S     +L+F+ N F +SV +    L +L  L 
Sbjct: 324 LYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLI 383

Query: 436 LSNNQF--VLELPKELEKLVQLSELDASHNLFGGEIPFQICSL-KSLEKLNLSHNNLSGL 492
           L  N      ++    + +  L  LD S N        + C+  +S+  LNLS N L+G 
Sbjct: 384 LQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGS 443

Query: 493 IPNCFEGMHGLSIIDISDNQLQ 514
           +  C      + ++D+ +N++ 
Sbjct: 444 VFRCL--PPKVKVLDLHNNRIM 463

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 95.7 bits (238), Expect = 9e-21
 Identities = 84/445 (18%), Positives = 149/445 (33%), Gaps = 58/445 (13%)

Query: 103 SYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQ-LSSIEELFLYSNHLN 161
           S +   +  L+  +P    L    K LS   N +   +       LS +  L L  N + 
Sbjct: 34  SMVDYSNRNLT-HVPK--DLPPRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIR 89

Query: 162 GSLPP--FLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSV-------GN 212
            SL    F     ++  L +++N L  +I  +   +  L  LDLSF    V       GN
Sbjct: 90  -SLDFHVF-LFNQDLEYLDVSHNRLQ-NI--SCCPMASLRHLDLSFNDFDVLPVCKEFGN 144

Query: 213 LTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENH 272
           LT L  LGL              +  L+ + L                       +   H
Sbjct: 145 LTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLD----------------------LVSYH 182

Query: 273 FQGTIPESLRN-CTSLIRVRLNGNNLTG---NISEALGLYPNLTFIDLSRNNFYGEISSN 328
            +G   ESL+   T+++ +  + N+L     N+S     +  L+ I L+  N    ++  
Sbjct: 183 IKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL 242

Query: 329 WGKCPKLGTLNVSMNNITGGIPREIGNM-----SQLQALDLSLNHIVGEIPKELG----- 378
                    LNV++ +I       +          ++ L++    I   I +E       
Sbjct: 243 SELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSET 302

Query: 379 KLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSN 438
            L SL    ++                E+     S +           +     +L  + 
Sbjct: 303 ALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQ 362

Query: 439 NQFVLELPKELEKLVQLSELDASHNLFG--GEIPFQICSLKSLEKLNLSHNNL-SGLIPN 495
           N F   + +    L +L  L    N      ++     ++ SLE L++S N+L S     
Sbjct: 363 NVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR 422

Query: 496 CFEGMHGLSIIDISDNQLQGPVPNS 520
                  + ++++S N L G V   
Sbjct: 423 TCAWAESILVLNLSSNMLTGSVFRC 447

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 69.1 bits (169), Expect = 2e-12
 Identities = 38/184 (20%), Positives = 63/184 (34%), Gaps = 29/184 (15%)

Query: 72  FSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSF 131
             S      L+ + N F  ++      L +L  + L  N L         +  ++  L  
Sbjct: 349 PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLET 407

Query: 132 ---QFNELDGSIPPEVCQL-SSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGS 187
                N L+       C    SI  L L SN L GS+   L     +  L ++NN     
Sbjct: 408 LDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNN----- 460

Query: 188 ILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSM--LTWLTLS 245
                          +  +P  V +L  L+ L +  N L  S+P    + +  L ++ L 
Sbjct: 461 --------------RIMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLH 505

Query: 246 GNHF 249
            N +
Sbjct: 506 DNPW 509

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  124 bits (312), Expect = 2e-30
 Identities = 84/451 (18%), Positives = 146/451 (32%), Gaps = 84/451 (18%)

Query: 76  PQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEV-GLLTHLKVLSFQFN 134
             + ++DLSLN       +    L  L ++ ++       I       L+ L +L   +N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 135 ELDGSIPPEVCQ-LSSIEELFLYSNHLNGSLPP--FLGNLSNIVRLYINNNSLSGSILTN 191
           +    +       L+++E L L   +L+G++    F   L+++  L + +N++       
Sbjct: 90  QFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK------ 142

Query: 192 IGNLKFLFELDLSFLPLSV-GNLTNLKSLGLMDNHLSGSIPP----SFGNSMLTWLTLSG 246
                          P S   N+     L L  N +  SI      +F     T L LS 
Sbjct: 143 ------------KIQPASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSS 189

Query: 247 NHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEAL- 305
                                ++E         +    TS+  + L+GN    ++++   
Sbjct: 190 ITLQD----------------MNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFF 233

Query: 306 GLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLS 365
                     L  +N Y     N G            N    G+       S ++  DLS
Sbjct: 234 DAIAGTKIQSLILSNSY-----NMGSSFGHTNFKDPDNFTFKGLEA-----SGVKTCDLS 283

Query: 366 LNHIVGEIPKEL-GKLNSLTKLILRGNQLTGRLPTEI-GSLIELEYLDFSANKFNNSVPE 423
            + I   + K +      L +L L  N++  ++       L  L  L+ S N   +    
Sbjct: 284 KSKI-FALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSR 341

Query: 424 SLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLN 483
              NL KL  L LS N               +  L      F G        L +L++L 
Sbjct: 342 MFENLDKLEVLDLSYNH--------------IRAL--GDQSFLG--------LPNLKELA 377

Query: 484 LSHNNLSGLIPNCFEGMHGLSIIDISDNQLQ 514
           L  N L  +    F+ +  L  I +  N   
Sbjct: 378 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  122 bits (307), Expect = 1e-29
 Identities = 81/391 (20%), Positives = 144/391 (36%), Gaps = 39/391 (9%)

Query: 53  VTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQI-GNLTKLSYISLDSNQ 111
           V  + L    ++  L + SFS    L  L +        I +     L+ L  + LD NQ
Sbjct: 32  VNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 112 LSGKIPAEV-GLLTHLKVLSFQFNEL-DGSIPPEV-CQLSSIEELFLYSNHLNGSLPP-- 166
              ++       L +L+VL+     L    +       L+S+E L L  N++   + P  
Sbjct: 91  FL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK-KIQPAS 148

Query: 167 FLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHL 226
           F  N+     L +  N      + +I     L          ++  L+++    + +  L
Sbjct: 149 FFLNMRRFHVLDLTFNK-----VKSICEEDLLN---FQGKHFTLLRLSSITLQDMNEYWL 200

Query: 227 SGSIPPSF-GNSMLTWLTLSGNHFTGYLPHNICRGG--------LLEAFIVSENHFQGTI 277
                 +   N+ +T L LSGN F   +                +L       + F  T 
Sbjct: 201 GWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN 260

Query: 278 PESLRNCT-------SLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSN-W 329
            +   N T        +    L+ + +   +      + +L  + L++N    +I  N +
Sbjct: 261 FKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI-NKIDDNAF 319

Query: 330 GKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKEL-GKLNSLTKLIL 388
                L  LN+S N +     R   N+ +L+ LDLS NHI   +  +    L +L +L L
Sbjct: 320 WGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI-RALGDQSFLGLPNLKELAL 378

Query: 389 RGNQLTGRLPTEI-GSLIELEYLDFSANKFN 418
             NQL   +P  I   L  L+ +    N ++
Sbjct: 379 DTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 72.1 bits (177), Expect = 2e-13
 Identities = 33/206 (16%), Positives = 61/206 (29%), Gaps = 28/206 (13%)

Query: 337 TLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKEL-GKLNSLTKLILRGNQLTG 395
            +++S+N+I          +  LQ L +        I       L+SL  L L  NQ   
Sbjct: 34  YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL- 92

Query: 396 RLPTEI-GSLIELEYLDFSANKFNNSV--PESLGNLLKLHYLGLSNNQFVLELPKELEKL 452
           +L T     L  LE L  +    + +V        L  L  L L +N             
Sbjct: 93  QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN------------ 140

Query: 453 VQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQ 512
             + ++    + F         +++    L+L+ N +  +         G     +  + 
Sbjct: 141 --IKKIQ-PASFF--------LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189

Query: 513 LQGPVPNSTAFRNAPVEALEGNKELC 538
           +     N              N  + 
Sbjct: 190 ITLQDMNEYWLGWEKCGNPFKNTSIT 215

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  120 bits (301), Expect = 1e-28
 Identities = 79/413 (19%), Positives = 123/413 (29%), Gaps = 79/413 (19%)

Query: 91  TIPSQIGNLTKLSYISLDSNQLSG---KIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQL 147
           +I   I N   LS  +   N +SG      +         +     NE   S+  E C +
Sbjct: 2   SIMLPINNNFSLS-QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAV-SLLKE-CLI 58

Query: 148 SSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLP 207
           +   EL L   +L+ SLP  L     I  L I  N+L                     LP
Sbjct: 59  NQFSELQLNRLNLS-SLPDNLP--PQITVLEITQNALI-------------------SLP 96

Query: 208 LSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFI 267
               +L  L      DN LS ++P    +  L  L +  N  T  LP       LLE   
Sbjct: 97  ELPASLEYLD---ACDNRLS-TLPELPAS--LKHLDVDNNQLT-MLPELP---ALLEYIN 146

Query: 268 VSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISS 327
              N     +PE     TSL  + +  N LT  + E                        
Sbjct: 147 ADNNQLT-MLPELP---TSLEVLSVRNNQLTF-LPELPE--------------------- 180

Query: 328 NWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQA----LDLSLNHIVGEIPKELGKLNSL 383
                  L  L+VS N +   +P         +          N I   IP+ +  L+  
Sbjct: 181 ------SLEALDVSTNLLES-LPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPT 232

Query: 384 TKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVL 443
             +IL  N L+ R+   +               F+ S  +   N L           F  
Sbjct: 233 CTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ--NTLHRPLADAVTAWFPE 290

Query: 444 ELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNC 496
               ++ ++    E +   N F      ++    S    +     ++  +   
Sbjct: 291 NKQSDVSQIWHAFEHEEHANTF-SAFLDRLSDTVSARNTSGFREQVAAWLEKL 342

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  113 bits (283), Expect = 3e-26
 Identities = 62/332 (18%), Positives = 103/332 (31%), Gaps = 56/332 (16%)

Query: 206 LPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTW--LTLSGNHFTGYLPHNICRGGLL 263
           + L + N  +L S     N +S      + ++   W    L G                 
Sbjct: 3   IMLPINNNFSL-SQNSFYNTIS-GTYADYFSAWDKWEKQALPGE---------------- 44

Query: 264 EAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYG 323
                + N     + E L        ++LN  NL+ ++ + L   P +T +++++N    
Sbjct: 45  -----NRNEAVSLLKECL--INQFSELQLNRLNLS-SLPDNLP--PQITVLEITQNAL-I 93

Query: 324 EISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSL 383
            +         L  L+   N ++  +P    +   L+ LD+  N +   +P+       L
Sbjct: 94  SLPELPAS---LEYLDACDNRLST-LPELPAS---LKHLDVDNNQLT-MLPELPA---LL 142

Query: 384 TKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVL 443
             +    NQLT  LP    SL   E L    N+    +PE   +L  L    +S N    
Sbjct: 143 EYINADNNQLT-MLPELPTSL---EVLSVRNNQLT-FLPELPESLEALD---VSTNLLE- 193

Query: 444 ELPKELEKLVQLSE----LDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEG 499
            LP    +     E         N     IP  I SL     + L  N LS  I      
Sbjct: 194 SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252

Query: 500 MHGLSIIDISDNQLQGPVPNSTAFRNAPVEAL 531
                                        +A+
Sbjct: 253 QTAQPDYHGPRIYFSMSDGQQNTLHRPLADAV 284

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 98.5 bits (245), Expect = 1e-21
 Identities = 65/393 (16%), Positives = 107/393 (27%), Gaps = 83/393 (21%)

Query: 75  FPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFN 134
            PQ+  L+++ N    ++P    +L  L       N+LS  +P     L HL V + Q  
Sbjct: 79  PPQITVLEITQNAL-ISLPELPASLEYL---DACDNRLS-TLPELPASLKHLDVDNNQLT 133

Query: 135 ELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGN 194
            L    P     L   E +   +N L   LP    +L     L + NN            
Sbjct: 134 ML----PELPALL---EYINADNNQLT-MLPELPTSLE---VLSVRNNQ----------- 171

Query: 195 LKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGN-----SMLTWLTLSGNHF 249
                   L+FLP       +L++L +  N L  S+P              +     N  
Sbjct: 172 --------LTFLPEL---PESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRI 219

Query: 250 TGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYP 309
           T                          IPE++ +      + L  N L+  I E+L    
Sbjct: 220 T-------------------------HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254

Query: 310 NLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNM-SQLQALDLSLNH 368
                   R  F             L   +            ++  +    +  + +   
Sbjct: 255 AQPDYHGPRIYFSMSDGQQNTLHRPLA--DAVTAWFPENKQSDVSQIWHAFEHEEHANTF 312

Query: 369 IVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNL 428
                   L    S         Q+   L      L     L   +        ES  + 
Sbjct: 313 S--AFLDRLSDTVSARNTSGFREQVAAWLEK----LSASAELRQQSFAVAADATESCEDR 366

Query: 429 LKLHYLGLSNNQFVLE-----LPKELEKLVQLS 456
           + L +  L     V +        +   L+ L 
Sbjct: 367 VALTWNNLRKTLLVHQASEGLFDNDTGALLSLG 399

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 90.0 bits (223), Expect = 6e-19
 Identities = 52/325 (16%), Positives = 93/325 (28%), Gaps = 43/325 (13%)

Query: 73  SSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQ 132
                L HLD+  N     +P     L  +   + D+NQL+  +P    L T L+VLS +
Sbjct: 117 ELPASLKHLDVDNNQ-LTMLPELPALLEYI---NADNNQLT-MLPE---LPTSLEVLSVR 168

Query: 133 FNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSN----IVRLYINNNSLSGSI 188
            N+L   +P       S+E L + +N L  SLP       +     +      N      
Sbjct: 169 NNQL-TFLPE---LPESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCREN------ 217

Query: 189 LTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNH 248
                         ++ +P ++ +L    ++ L DN LS S      +         G  
Sbjct: 218 -------------RITHIPENILSLDPTCTIILEDNPLS-SRIRESLSQQTAQPDYHGPR 263

Query: 249 FTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLY 308
               +                   F       +           + N  +    + L   
Sbjct: 264 IYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFS-AFLDRLSDT 322

Query: 309 PNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNH 368
            +       R      +++   K      L      +         +   L   +L    
Sbjct: 323 VSARNTSGFREQ----VAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTL 378

Query: 369 IVGEIPKELGKLNSLTKLILRGNQL 393
           +V     E    N    L+  G ++
Sbjct: 379 LV-HQASEGLFDNDTGALLSLGREM 402

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score =  113 bits (285), Expect = 9e-28
 Identities = 32/100 (32%), Positives = 53/100 (53%), Gaps = 3/100 (3%)

Query: 616 YDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEV 675
             E+   +++F  +  +G GG G VY+  L  G +VAVK+        Q   + +F TEV
Sbjct: 22  LRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRL--KEERTQ-GGELQFQTEV 78

Query: 676 QALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
           + ++   HRN+++  GFC       LVY ++  GS+A+ L
Sbjct: 79  EMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCL 118

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score =  111 bits (280), Expect = 4e-27
 Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 8/126 (6%)

Query: 588 KSDSGDRQSSNQNPQGLFSILNFEGKLVYDEIVRETNDFDAEYCIGNGGHGSVYRAELPS 647
              S    S N      + +     ++   ++   TN+FD ++ IG+G  G VY+  L  
Sbjct: 3   SKYSKATNSINDALSSSYLVPFESYRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRD 62

Query: 648 GEVVAVKKFHSSIPCDQIADQ--KEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEF 705
           G  VA+K+          + Q  +EF TE++ L+  RH ++V   GFC       L+Y++
Sbjct: 63  GAKVALKRRTPE------SSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEMILIYKY 116

Query: 706 LERGSL 711
           +E G+L
Sbjct: 117 MENGNL 122

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  110 bits (277), Expect = 9e-27
 Identities = 58/233 (24%), Positives = 95/233 (40%), Gaps = 14/233 (6%)

Query: 289 RVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNIT-- 346
            +R N   LT   S   G+  + T ++L  N         + K  +L  L++S N ++  
Sbjct: 11  EIRCNSKGLT---SVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK 67

Query: 347 GGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEI-GSLI 405
           G   +     + L+ LDLS N ++  +      L  L  L  + + L       +  SL 
Sbjct: 68  GCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 126

Query: 406 ELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKE-LEKLVQLSELDASHNL 464
            L YLD S      +       L  L  L ++ N F      +   +L  L+ LD S   
Sbjct: 127 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186

Query: 465 FGGEIP---FQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQ 514
              ++    F   SL SL+ LN+SHNN   L    ++ ++ L ++D S N + 
Sbjct: 187 LE-QLSPTAFN--SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 92.8 bits (231), Expect = 9e-21
 Identities = 61/258 (23%), Positives = 97/258 (37%), Gaps = 13/258 (5%)

Query: 240 TWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLT- 298
           T +  +    T  +P  I          +  N  Q          T L ++ L+ N L+ 
Sbjct: 10  TEIRCNSKGLT-SVPTGIPSS--ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66

Query: 299 -GNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREI-GNM 356
            G  S++     +L ++DLS N     +SSN+    +L  L+   +N+       +  ++
Sbjct: 67  KGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 125

Query: 357 SQLQALDLSLNHIVGEIPKE-LGKLNSLTKLILRGNQLTGRLPTEI-GSLIELEYLDFSA 414
             L  LD+S  H            L+SL  L + GN        +I   L  L +LD S 
Sbjct: 126 RNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184

Query: 415 NKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQIC 474
            +     P +  +L  L  L +S+N F        + L  L  LD S N        Q  
Sbjct: 185 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQEL 243

Query: 475 S--LKSLEKLNLSHNNLS 490
                SL  LNL+ N+ +
Sbjct: 244 QHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 90.5 bits (225), Expect = 5e-20
 Identities = 58/308 (18%), Positives = 97/308 (31%), Gaps = 73/308 (23%)

Query: 139 SIPPEVCQLSSIEELFLYSNHLNGSLPP-FLGNLSNIVRLYINNNSLSGSILTNIGNLKF 197
           S+P  +   SS   L L SN L  SLP      L+ + +L +++N LS        +   
Sbjct: 21  SVPTGI--PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLS---FKGCCSQSD 74

Query: 198 LFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSM-LTWLTLSGNHFTGYLPHN 256
                           T+LK L L  N +  ++  +F     L  L    ++        
Sbjct: 75  F-------------GTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQ----- 115

Query: 257 ICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDL 316
                     +   + F            +LI + ++  +                    
Sbjct: 116 ----------MSEFSVFLS--------LRNLIYLDISHTHTR----------------VA 141

Query: 317 SRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREI-GNMSQLQALDLSLNHIVGEIPK 375
               F G           L  L ++ N+       +I   +  L  LDLS   +  ++  
Sbjct: 142 FNGIFNG--------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSP 192

Query: 376 E-LGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLK-LHY 433
                L+SL  L +  N            L  L+ LD+S N    S  + L +    L +
Sbjct: 193 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF 252

Query: 434 LGLSNNQF 441
           L L+ N F
Sbjct: 253 LNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 88.5 bits (220), Expect = 2e-19
 Identities = 58/258 (22%), Positives = 88/258 (34%), Gaps = 40/258 (15%)

Query: 53  VTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNG--FFGTIPSQIGNLTKLSYISLDSN 110
            T + L +  L  +L    F    QL  L LS NG  F G         T L Y+ L  N
Sbjct: 30  ATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 111 QLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQ-LSSIEELFLYSNHLNGSLPP-FL 168
            +   + +    L  L+ L FQ + L       V   L ++  L +   H          
Sbjct: 89  GVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIF 146

Query: 169 GNLSNIVRLYINNNSLSGSILTNI-GNLKFLFELDLSFLPLSV------GNLTNLKSLGL 221
             LS++  L +  NS   + L +I   L+ L  LDLS   L         +L++L+ L +
Sbjct: 147 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 206

Query: 222 MDNHLSGSIPPSF--GNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPE 279
             N+   S+        + L  L  S NH                     +   Q     
Sbjct: 207 SHNNFF-SLDTFPYKCLNSLQVLDYSLNHIM----------------TSKKQELQHFP-- 247

Query: 280 SLRNCTSLIRVRLNGNNL 297
                +SL  + L  N+ 
Sbjct: 248 -----SSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 60.8 bits (148), Expect = 4e-10
 Identities = 30/159 (18%), Positives = 59/159 (37%), Gaps = 12/159 (7%)

Query: 58  LRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQI-GNLTKLSYISLDSNQLSGKI 116
            +++ L        F S   L++LD+S         + I   L+ L  + +  N      
Sbjct: 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHT-RVAFNGIFNGLSSLEVLKMAGNSFQENF 166

Query: 117 PAEV-GLLTHLKVLSFQFNELDGSIPPEV-CQLSSIEELFLYSNHLNGSLPP-FLGNLSN 173
             ++   L +L  L     +L+  + P     LSS++ L +  N+   SL       L++
Sbjct: 167 LPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNS 224

Query: 174 IVRLYINNNSLS---GSILTNIGNLKFLFELDLSFLPLS 209
           +  L  + N +       L +      L  L+L+    +
Sbjct: 225 LQVLDYSLNHIMTSKKQELQHF--PSSLAFLNLTQNDFA 261

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  110 bits (276), Expect = 2e-26
 Identities = 61/310 (19%), Positives = 110/310 (35%), Gaps = 25/310 (8%)

Query: 215 NLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQ 274
           +L+ +   D  L   +P          L L  N  T     +      L   I+  N   
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLPPD-TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89

Query: 275 GTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPK 334
              P +      L R+ L+ N L   + E   +   L  + +  N       S +    +
Sbjct: 90  KISPGAFAPLVKLERLYLSKNQLK-ELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQ 146

Query: 335 LGTLNVSMNNIT-GGIPREI-GNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQ 392
           +  + +  N +   GI       M +L  + ++  +I   IP+ L    SLT+L L GN+
Sbjct: 147 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNK 203

Query: 393 LTGRLPTEI-GSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEK 451
           +T ++       L  L  L  S N  +     SL N   L  L L+NN+ V ++P  L  
Sbjct: 204 IT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD 261

Query: 452 LVQLSELDASHN--------LFGGEIPFQICSLKSLEKLNLSHNNL--SGLIPNCFEGMH 501
              +  +   +N         F            S   ++L  N +    + P+ F  ++
Sbjct: 262 HKYIQVVYLHNNNISAIGSNDFCPPGYNT--KKASYSGVSLFSNPVQYWEIQPSTFRCVY 319

Query: 502 GLSIIDISDN 511
             + + + + 
Sbjct: 320 VRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  101 bits (253), Expect = 2e-23
 Identities = 76/361 (21%), Positives = 119/361 (32%), Gaps = 72/361 (19%)

Query: 142 PEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFEL 201
           P  CQ      +      L   +P  L    +   L + NN +     T I +  F    
Sbjct: 26  PFRCQCHL-RVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKI-----TEIKDGDF---- 72

Query: 202 DLSFLPLSVGNLTNLKSLGLMDNHLSGSIPP-SFGN-SMLTWLTLSGNHFTGYLPHNICR 259
                     NL NL +L L++N +S  I P +F     L  L LS N            
Sbjct: 73  ---------KNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLK--------- 113

Query: 260 GGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRN 319
                            +PE +    +L  +R++ N +T            +  ++L  N
Sbjct: 114 ----------------ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN 155

Query: 320 NFY-GEISSNW-GKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKE- 376
                 I +       KL  + ++  NIT  IP+  G    L  L L  N I  ++    
Sbjct: 156 PLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQ--GLPPSLTELHLDGNKI-TKVDAAS 211

Query: 377 LGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGL 436
           L  LN+L KL L  N ++      + +   L  L  + NK    VP  L +   +  + L
Sbjct: 212 LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYL 270

Query: 437 SNNQF------VLELPKELEKLVQLSELDASHN-LFGGEIP---FQICSLKSLEKLNLSH 486
            NN            P    K    S +    N +   EI    F+   +     + L +
Sbjct: 271 HNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR--CVYVRAAVQLGN 328

Query: 487 N 487
            
Sbjct: 329 Y 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 96.6 bits (241), Expect = 6e-22
 Identities = 50/242 (20%), Positives = 99/242 (40%), Gaps = 24/242 (9%)

Query: 282 RNCT-SLIRVRLNGNNLT---GNISEALGLYPNLTFIDLSRNNFYGEISSNW-GKCPKLG 336
             C   L  V+ +   L     ++       P+   +DL  N    EI          L 
Sbjct: 27  FRCQCHLRVVQCSDLGLEKVPKDLP------PDTALLDLQNNKI-TEIKDGDFKNLKNLH 79

Query: 337 TLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGR 396
           TL +  N I+   P     + +L+ L LS N +  E+P+++    +L +L +  N++T +
Sbjct: 80  TLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEIT-K 135

Query: 397 LPTEI-GSLIELEYLDFSANKFNNSV--PESLGNLLKLHYLGLSNNQFVLELPKELEKLV 453
           +   +   L ++  ++   N   +S     +   + KL Y+ +++      +P+ L    
Sbjct: 136 VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PP 192

Query: 454 QLSELDASHNLFGGEIPFQICS-LKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQ 512
            L+EL    N    ++       L +L KL LS N++S +          L  + +++N+
Sbjct: 193 SLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251

Query: 513 LQ 514
           L 
Sbjct: 252 LV 253

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 95.1 bits (237), Expect = 2e-21
 Identities = 55/350 (15%), Positives = 113/350 (32%), Gaps = 85/350 (24%)

Query: 53  VTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQI-GNLTKLSYISLDSNQ 111
              + L+N  ++  ++D  F +   L  L L  N     I       L KL  + L  NQ
Sbjct: 54  TALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPLVKLERLYLSKNQ 111

Query: 112 LSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPF-LGN 170
           L                           +P ++    +++EL ++ N +   +       
Sbjct: 112 LK-------------------------ELPEKM--PKTLQELRVHENEIT-KVRKSVFNG 143

Query: 171 LSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSI 230
           L+ ++ + +  N L  S +            + +F       +  L  + + D +++ +I
Sbjct: 144 LNQMIVVELGTNPLKSSGIE-----------NGAFQ-----GMKKLSYIRIADTNIT-TI 186

Query: 231 PPS-FGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIR 289
           P     +  LT L L GN  T                 V     +G          +L +
Sbjct: 187 PQGLPPS--LTELHLDGNKIT----------------KVDAASLKG--------LNNLAK 220

Query: 290 VRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITG-- 347
           + L+ N+++   + +L   P+L  + L+ N    ++         +  + +  NNI+   
Sbjct: 221 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIG 279

Query: 348 ----GIPREIGNMSQLQALDLSLNHI-VGEIPKEL-GKLNSLTKLILRGN 391
                 P      +    + L  N +   EI       +     + L   
Sbjct: 280 SNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 91.2 bits (227), Expect = 4e-20
 Identities = 43/193 (22%), Positives = 72/193 (37%), Gaps = 10/193 (5%)

Query: 337 TLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGR 396
            L++  N IT     +  N+  L  L L  N I    P     L  L +L L  NQL   
Sbjct: 56  LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-E 114

Query: 397 LPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLEL--PKELEKLVQ 454
           LP        L+ L    N+           L ++  + L  N            + + +
Sbjct: 115 LPE--KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172

Query: 455 LSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQ 514
           LS +  +       IP  +    SL +L+L  N ++ +     +G++ L+ + +S N + 
Sbjct: 173 LSYIRIADTNI-TTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 229

Query: 515 GPVPNSTAFRNAP 527
             V N  +  N P
Sbjct: 230 A-VDNG-SLANTP 240

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 72.3 bits (178), Expect = 7e-14
 Identities = 34/146 (23%), Positives = 63/146 (43%), Gaps = 6/146 (4%)

Query: 382 SLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQF 441
            L  +      L  ++P ++    +   LD   NK          NL  LH L L NN+ 
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 442 VLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMH 501
               P     LV+L  L  S N    E+P ++   K+L++L +  N ++ +  + F G++
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLN 145

Query: 502 GLSIIDISDNQLQGPVPNSTAFRNAP 527
            + ++++  N L+     + AF+   
Sbjct: 146 QMIVVELGTNPLKSSGIENGAFQGMK 171

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  104 bits (261), Expect = 7e-24
 Identities = 60/244 (24%), Positives = 99/244 (40%), Gaps = 13/244 (5%)

Query: 276 TIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSN-WGKCPK 334
            +P+ +   ++   + L  NN+    ++      +L  + L RN+   +I    +     
Sbjct: 68  EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI-RQIEVGAFNGLAS 124

Query: 335 LGTLNVSMNNITGGIPREI-GNMSQLQALDLSLNHIVGEIPKE-LGKLNSLTKLIL-RGN 391
           L TL +  N +T  IP      +S+L+ L L  N I   IP     ++ SL +L L    
Sbjct: 125 LNTLELFDNWLTV-IPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELK 182

Query: 392 QLTGRLPTEI-GSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELE 450
           +L   +       L  L+YL+         +P +L  L+ L  L +S N F    P    
Sbjct: 183 KLE-YISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFH 239

Query: 451 KLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISD 510
            L  L +L   ++            L SL +LNL+HNNLS L  + F  +  L  + +  
Sbjct: 240 GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHH 299

Query: 511 NQLQ 514
           N   
Sbjct: 300 NPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 89.8 bits (223), Expect = 4e-19
 Identities = 58/259 (22%), Positives = 92/259 (35%), Gaps = 21/259 (8%)

Query: 75  FPQLVHLDLSLNGFFGTIPSQI-GNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQF 133
             Q   +  +  G    +P  I  N   L+   L  N +          L HL+VL    
Sbjct: 53  SNQFSKVVCTRRGLS-EVPQGIPSNTRYLN---LMENNIQMIQADTFRHLHHLEVLQLGR 108

Query: 134 NELDGSIPPEV-CQLSSIEELFLYSNHLNGSLPP-FLGNLSNIVRLYINNN---SLSGSI 188
           N +   I       L+S+  L L+ N L   +P      LS +  L++ NN   S+    
Sbjct: 109 NSI-RQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYA 166

Query: 189 LTNIGNLKFLFELD----LSFLPLSV-GNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLT 243
              + +L  L +L     L ++       L NLK L L   ++   +P       L  L 
Sbjct: 167 FNRVPSLMRL-DLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPNLTPLVGLEELE 224

Query: 244 LSGNHFTGYLPHNICRG-GLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNIS 302
           +SGNHF   +      G   L+   V  +        +     SL+ + L  NNL+    
Sbjct: 225 MSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPH 283

Query: 303 EALGLYPNLTFIDLSRNNF 321
           +       L  + L  N +
Sbjct: 284 DLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 88.3 bits (219), Expect = 1e-18
 Identities = 52/258 (20%), Positives = 94/258 (36%), Gaps = 43/258 (16%)

Query: 52  RVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQI-GNLTKLSYISLDSN 110
               ++L    +   ++  +F     L  L L  N     I       L  L+ + L  N
Sbjct: 76  NTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDN 133

Query: 111 QLSGKIPAEV-GLLTHLKVLSFQFNELDGSIPPEV-CQLSSIEELFLYSNHLNGSLPPF- 167
            L+  IP+     L+ L+ L  + N +  SIP     ++ S+  L L        +    
Sbjct: 134 WLT-VIPSGAFEYLSKLRELWLRNNPI-ESIPSYAFNRVPSLMRLDLGELKKLEYISEGA 191

Query: 168 LGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSV------GNLTNLKSLGL 221
              L N+  L +   ++    + N+  L  L EL++S              L++LK L +
Sbjct: 192 FEGLFNLKYLNLGMCNIKD--MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWV 249

Query: 222 MDNHLSGSIPP-SF-GNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPE 279
           M++ +S  I   +F G + L  L L+ N+ +  LPH++                      
Sbjct: 250 MNSQVS-LIERNAFDGLASLVELNLAHNNLS-SLPHDL---------------------- 285

Query: 280 SLRNCTSLIRVRLNGNNL 297
                  L+ + L+ N  
Sbjct: 286 -FTPLRYLVELHLHHNPW 302

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  102 bits (257), Expect = 2e-23
 Identities = 58/235 (24%), Positives = 92/235 (39%), Gaps = 16/235 (6%)

Query: 286 SLIRVRLNGNNLTGNISEAL--GLYPNLTFIDLSRNNFYGEISSNW-GKCPKLGTLNVSM 342
              +V     NL       +  G+  N   ++L  N     I  N       L  L +S 
Sbjct: 44  QFSKVICVRKNLR-----EVPDGISTNTRLLNLHENQI-QIIKVNSFKHLRHLEILQLSR 97

Query: 343 NNITGGIPREIGNMSQLQALDLSLNHIVGEIPKE-LGKLNSLTKLILRGNQLTGRLPTEI 401
           N+I          ++ L  L+L  N +   IP      L+ L +L LR N +   +P+  
Sbjct: 98  NHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYA 155

Query: 402 -GSLIELEYLDFSANKFNNSVPE-SLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELD 459
              +  L  LD    K  + + E +   L  L YL L+      E+P  L  L++L ELD
Sbjct: 156 FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELD 213

Query: 460 ASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQ 514
            S N      P     L  L+KL +  + +  +  N F+ +  L  I+++ N L 
Sbjct: 214 LSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  101 bits (254), Expect = 4e-23
 Identities = 62/244 (25%), Positives = 102/244 (41%), Gaps = 13/244 (5%)

Query: 276 TIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNW-GKCPK 334
            +P+ +   T+   + L+ N +      +     +L  + LSRN+    I          
Sbjct: 57  EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI-RTIEIGAFNGLAN 113

Query: 335 LGTLNVSMNNITGGIPREI-GNMSQLQALDLSLNHIVGEIPKEL-GKLNSLTKLIL-RGN 391
           L TL +  N +T  IP      +S+L+ L L  N I   IP     ++ SL +L L    
Sbjct: 114 LNTLELFDNRLTT-IPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELK 171

Query: 392 QLTGRLPTEI-GSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELE 450
           +L+  +       L  L YL+ +       +P +L  L+KL  L LS N      P   +
Sbjct: 172 RLS-YISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQ 228

Query: 451 KLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISD 510
            L+ L +L    +           +L+SL ++NL+HNNL+ L  + F  +H L  I +  
Sbjct: 229 GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288

Query: 511 NQLQ 514
           N   
Sbjct: 289 NPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 88.3 bits (219), Expect = 1e-18
 Identities = 60/258 (23%), Positives = 96/258 (37%), Gaps = 43/258 (16%)

Query: 52  RVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQI-GNLTKLSYISLDSN 110
               ++L    +   ++  SF     L  L LS N    TI       L  L+ + L  N
Sbjct: 65  NTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDN 122

Query: 111 QLSGKIPAEV-GLLTHLKVLSFQFNELDGSIPPEV-CQLSSIEELFLYSNHLNGSLPP-F 167
           +L+  IP      L+ LK L  + N ++ SIP     ++ S+  L L        +    
Sbjct: 123 RLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGA 180

Query: 168 LGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSV------GNLTNLKSLGL 221
              LSN+  L +   +L    + N+  L  L ELDLS   LS         L +L+ L +
Sbjct: 181 FEGLSNLRYLNLAMCNLRE--IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWM 238

Query: 222 MDNHLSGSIPP-SFGN-SMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPE 279
           + + +   I   +F N   L  + L+ N+ T  LPH++                      
Sbjct: 239 IQSQIQ-VIERNAFDNLQSLVEINLAHNNLT-LLPHDL---------------------- 274

Query: 280 SLRNCTSLIRVRLNGNNL 297
                  L R+ L+ N  
Sbjct: 275 -FTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 86.3 bits (214), Expect = 5e-18
 Identities = 60/305 (19%), Positives = 98/305 (32%), Gaps = 76/305 (24%)

Query: 139 SIPPEVCQLSSIEELFLYSNHLNGSLPPF-LGNLSNIVRLYINNNSLSGSILTNIGNLKF 197
            +P  +   ++   L L+ N +   +      +L ++  L ++ N +       I    F
Sbjct: 57  EVPDGI--STNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIR-----TIEIGAF 108

Query: 198 LFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPS--FGNSMLTWLTLSGNHFTGYLPH 255
                          L NL +L L DN L+ +IP       S L  L L  N     +P 
Sbjct: 109 -------------NGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIP- 152

Query: 256 NICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFID 315
                                   +     SL R+ L        +S             
Sbjct: 153 ----------------------SYAFNRIPSLRRLDLGELK---RLSY------------ 175

Query: 316 LSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPK 375
           +S   F G           L  LN++M N+   IP  +  + +L  LDLS NH+   I  
Sbjct: 176 ISEGAFEG--------LSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLS-AIRP 224

Query: 376 E-LGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYL 434
                L  L KL +  +Q+         +L  L  ++ + N       +    L  L  +
Sbjct: 225 GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERI 284

Query: 435 GLSNN 439
            L +N
Sbjct: 285 HLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 2/74 (2%)

Query: 454 QLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQL 513
               L+   N            L+ LE L LS N++  +    F G+  L+ +++ DN+L
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124

Query: 514 QGPVPNSTAFRNAP 527
              +PN  AF    
Sbjct: 125 TT-IPNG-AFVYLS 136

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  103 bits (258), Expect = 3e-23
 Identities = 53/244 (21%), Positives = 88/244 (36%), Gaps = 20/244 (8%)

Query: 279 ESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISS--NWGKCPKLG 336
                    I+  L   ++T  ++       ++  I  + ++    I S       P + 
Sbjct: 15  FPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSD----IKSVQGIQYLPNVT 68

Query: 337 TLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGR 396
            L ++ N +T   P  + N+  L  L L  N I  ++   L  L  L  L L  N ++  
Sbjct: 69  KLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSLEHNGIS-- 122

Query: 397 LPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLS 456
               +  L +LE L    NK  +     L  L KL  L L +NQ  +     L  L +L 
Sbjct: 123 DINGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQ--ISDIVPLAGLTKLQ 178

Query: 457 ELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGP 516
            L  S N    ++   +  LK+L+ L L          N    +   + +  +D  L  P
Sbjct: 179 NLYLSKNHIS-DLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTP 236

Query: 517 VPNS 520
              S
Sbjct: 237 EIIS 240

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 94.4 bits (234), Expect = 3e-20
 Identities = 46/245 (18%), Positives = 90/245 (36%), Gaps = 20/245 (8%)

Query: 279 ESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEIS--SNWGKCPKLG 336
            +     S+ ++  N +++  ++ + +   PN+T + L+ N     ++          LG
Sbjct: 37  VTQNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNK----LTDIKPLTNLKNLG 90

Query: 337 TLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGR 396
            L +  N I       + ++ +L++L L  N I  +I   L  L  L  L L  N++T  
Sbjct: 91  WLFLDENKIKDLSS--LKDLKKLKSLSLEHNGIS-DIN-GLVHLPQLESLYLGNNKITD- 145

Query: 397 LPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLS 456
             T +  L +L+ L    N+ ++     L  L KL  L LS N   +   + L  L  L 
Sbjct: 146 -ITVLSRLTKLDTLSLEDNQISDI--VPLAGLTKLQNLYLSKNH--ISDLRALAGLKNLD 200

Query: 457 ELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGP 516
            L+        +      +L     +  +  +L    P            ++  +  +  
Sbjct: 201 VLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV--TPEIISDDGDYEKPNVKWHLPEFT 258

Query: 517 VPNST 521
              S 
Sbjct: 259 NEVSF 263

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 89.0 bits (220), Expect = 1e-18
 Identities = 53/290 (18%), Positives = 100/290 (34%), Gaps = 17/290 (5%)

Query: 70  FSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVL 129
           F   +F + +  +L       T       L  +  I  +++ +   +   +  L ++  L
Sbjct: 15  FPDDAFAETIKDNLKKKSV--TDAVTQNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKL 70

Query: 130 SFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSIL 189
               N+L   I P +  L ++  LFL  N +   L   L +L  +  L + +N +S   +
Sbjct: 71  FLNGNKLT-DIKP-LTNLKNLGWLFLDENKIK-DLSS-LKDLKKLKSLSLEHNGIS--DI 124

Query: 190 TNIGNLKFLFELDLSFLPLS----VGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLS 245
             + +L  L  L L    ++    +  LT L +L L DN +S  I P  G + L  L LS
Sbjct: 125 NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS-DIVPLAGLTKLQNLYLS 183

Query: 246 GNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEAL 305
            NH +      +     L+   +              N      V+    +L      + 
Sbjct: 184 KNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISD 241

Query: 306 GLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGN 355
                   +      F  E+S  + +   +G      +       +E+  
Sbjct: 242 DGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYT 291

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 99.8 bits (249), Expect = 4e-23
 Identities = 50/236 (21%), Positives = 91/236 (38%), Gaps = 18/236 (7%)

Query: 279 ESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTL 338
                  + I++    +N+T   +        +T +                    L  L
Sbjct: 13  FPDPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGV--TTIEGVQYLNNLIGL 68

Query: 339 NVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLP 398
            +  N IT   P  + N++++  L+LS N +  +    +  L S+  L L   Q+T    
Sbjct: 69  ELKDNQITDLAP--LKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITD--V 122

Query: 399 TEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSEL 458
           T +  L  L+ L    N+  N     L  L  L YL + N Q  +     L  L +L+ L
Sbjct: 123 TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQ--VSDLTPLANLSKLTTL 178

Query: 459 DASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQ 514
            A  N    +I   + SL +L +++L +N +S + P        L I+ +++  + 
Sbjct: 179 KADDNKIS-DISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 95.5 bits (238), Expect = 1e-21
 Identities = 49/252 (19%), Positives = 91/252 (36%), Gaps = 20/252 (7%)

Query: 271 NHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEIS--SN 328
                T   +  +   +  +   G  +T  I E +    NL  ++L  N     I+  + 
Sbjct: 27  GKSNVTDTVTQADLDGITTLSAFGTGVT-TI-EGVQYLNNLIGLELKDNQ----ITDLAP 80

Query: 329 WGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLIL 388
                K+  L +S N +       I  +  ++ LDL+   I    P  L  L++L  L L
Sbjct: 81  LKNLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYL 136

Query: 389 RGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKE 448
             NQ+T    + +  L  L+YL     + ++     L NL KL  L   +N+  +     
Sbjct: 137 DLNQITN--ISPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNK--ISDISP 190

Query: 449 LEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDI 508
           L  L  L E+   +N      P    +  +L  + L++  ++         +   +++  
Sbjct: 191 LASLPNLIEVHLKNNQISDVSPLA--NTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKG 248

Query: 509 SDNQLQGPVPNS 520
                  P   S
Sbjct: 249 PSGAPIAPATIS 260

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 93.6 bits (233), Expect = 5e-21
 Identities = 48/279 (17%), Positives = 95/279 (34%), Gaps = 43/279 (15%)

Query: 168 LGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLS----VGNLTNLKSLGLMD 223
              L+N +++    ++++        +L  +  L      ++    V  L NL  L L D
Sbjct: 15  DPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKD 72

Query: 224 NHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRN 283
           N ++  + P    + +T L LSGN                                ++  
Sbjct: 73  NQIT-DLAPLKNLTKITELELSGN--------------------------PLKNVSAIAG 105

Query: 284 CTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMN 343
             S+  + L    +T      L    NL  + L  N       S       L  L++   
Sbjct: 106 LQSIKTLDLTSTQITD--VTPLAGLSNLQVLYLDLNQI--TNISPLAGLTNLQYLSIGNA 161

Query: 344 NITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGS 403
            ++   P  + N+S+L  L    N I  +I   L  L +L ++ L+ NQ++    + + +
Sbjct: 162 QVSDLTP--LANLSKLTTLKADDNKIS-DIS-PLASLPNLIEVHLKNNQISD--VSPLAN 215

Query: 404 LIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFV 442
              L  +  +     N       NL+  + +   +   +
Sbjct: 216 TSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPI 254

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 84.7 bits (210), Expect = 4e-18
 Identities = 55/292 (18%), Positives = 108/292 (36%), Gaps = 26/292 (8%)

Query: 70  FSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVL 129
           F   +    + +    +    T      +L  ++ +S     ++  I   V  L +L  L
Sbjct: 13  FPDPALANAIKIAAGKSNV--TDTVTQADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGL 68

Query: 130 SFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSIL 189
             + N++   + P +  L+ I EL L  N L  ++   +  L +I  L + +  ++   +
Sbjct: 69  ELKDNQIT-DLAP-LKNLTKITELELSGNPLK-NVSA-IAGLQSIKTLDLTSTQITD--V 122

Query: 190 TNIGNLKFLFELDLSFLPLS----VGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLS 245
           T +  L  L  L L    ++    +  LTNL+ L + +  +S  + P    S LT L   
Sbjct: 123 TPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVS-DLTPLANLSKLTTLKAD 181

Query: 246 GNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEAL 305
            N  +   P  +     L    +  N    +    L N ++L  V L    +T   ++ +
Sbjct: 182 DNKISDISP--LASLPNLIEVHLKNNQI--SDVSPLANTSNLFIVTLTNQTIT---NQPV 234

Query: 306 GLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMS 357
               NL   ++ +      I+              +  N+T  +   I N+S
Sbjct: 235 FYNNNLVVPNVVKGPSGAPIAPAT----ISDNGTYASPNLTWNLTSFINNVS 282

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 37/171 (21%), Positives = 74/171 (43%), Gaps = 11/171 (6%)

Query: 72  FSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSF 131
            +    L  L L LN    T  S +  LT L Y+S+ + Q+S  +   +  L+ L  L  
Sbjct: 125 LAGLSNLQVLYLDLNQI--TNISPLAGLTNLQYLSIGNAQVS-DLTP-LANLSKLTTLKA 180

Query: 132 QFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTN 191
             N++   I P +  L ++ E+ L +N ++  + P L N SN+  + + N +++   +  
Sbjct: 181 DDNKIS-DISP-LASLPNLIEVHLKNNQIS-DVSP-LANTSNLFIVTLTNQTITNQPVFY 236

Query: 192 IGNLKFL-FELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTW 241
             NL         S  P++   +++  +      +L+ ++     N   T+
Sbjct: 237 NNNLVVPNVVKGPSGAPIAPATISDNGT--YASPNLTWNLTSFINNVSYTF 285

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 97.8 bits (244), Expect = 1e-22
 Identities = 48/234 (20%), Positives = 81/234 (34%), Gaps = 31/234 (13%)

Query: 285 TSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNW-GKCPKLGTLNVSMN 343
            +  R+ L+GN ++   + +     NLT + L  N     I +        L  L++S N
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLALLEQLDLSDN 90

Query: 344 NITGGIPREI-GNMSQLQALDLSLNHIVGEIPKE-LGKLNSLTKLILRGNQLTGRLPTEI 401
                +       + +L  L L    +  E+       L +L  L L+ N L   LP + 
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDT 148

Query: 402 -GSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDA 460
              L  L +L    N+ ++    +   L  L  L L  N+              ++ +  
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR--------------VAHVHP 194

Query: 461 SHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQ 514
             + F          L  L  L L  NNLS L       +  L  + ++DN   
Sbjct: 195 --HAFRD--------LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 79.3 bits (196), Expect = 2e-16
 Identities = 54/252 (21%), Positives = 86/252 (34%), Gaps = 50/252 (19%)

Query: 75  FPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEV-GLLTHLKVLSFQF 133
                 + L  N       +       L+ + L SN L+ +I A     L  L+ L    
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSD 89

Query: 134 NELDGSIPPEV-CQLSSIEELFLYSNHLNGSLPP-FLGNLSNIVRLYINNNSLSGSILTN 191
           N    S+ P     L  +  L L    L   L P     L+ +  LY+ +N+     L  
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNA-----LQA 143

Query: 192 IGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPP-SFGN-SMLTWLTLSGNHF 249
           + +  F              +L NL  L L  N +S S+P  +F     L  L L  N  
Sbjct: 144 LPDDTF-------------RDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRV 189

Query: 250 TGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYP 309
             ++                        P + R+   L+ + L  NNL+   +EAL    
Sbjct: 190 A-HVH-----------------------PHAFRDLGRLMTLYLFANNLSALPTEALAPLR 225

Query: 310 NLTFIDLSRNNF 321
            L ++ L+ N +
Sbjct: 226 ALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 78.9 bits (195), Expect = 3e-16
 Identities = 46/207 (22%), Positives = 78/207 (37%), Gaps = 19/207 (9%)

Query: 54  TNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQI-GNLTKLSYISLDSNQL 112
             I L    +S  +   SF +   L  L L  N     I +     L  L  + L  N  
Sbjct: 35  QRIFLHGNRIS-HVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 113 SGKIPAEV-GLLTHLKVLSFQFNELDGSIPPEV-CQLSSIEELFLYSNHLNGSLPP-FLG 169
              +       L  L  L      L   + P +   L++++ L+L  N L  +LP     
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFR 150

Query: 170 NLSNIVRLYINNN---SLSGSILTNIGNLKFLFELD---LSFLPLSV-GNLTNLKSLGLM 222
           +L N+  L+++ N   S+       + +L  L  L    ++ +      +L  L +L L 
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL-LHQNRVAHVHPHAFRDLGRLMTLYLF 209

Query: 223 DNHLSGSIPPSF--GNSMLTWLTLSGN 247
            N+LS ++P         L +L L+ N
Sbjct: 210 ANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 74.3 bits (183), Expect = 1e-14
 Identities = 56/283 (19%), Positives = 88/283 (31%), Gaps = 78/283 (27%)

Query: 139 SIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFL 198
           ++P  +   ++ + +FL+ N ++           N+  L++++N      L  I    F 
Sbjct: 25  AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-----LARIDAAAF- 76

Query: 199 FELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPS--FGNSMLTWLTLSGNHFTGYLPHN 256
                         L  L+ L L DN    S+ P+   G   L  L L            
Sbjct: 77  ------------TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ------ 118

Query: 257 ICRGGLLEAFIVSENHFQGTIPE-SLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFID 315
                               +     R   +L  + L  N L   +       P+ TF D
Sbjct: 119 -------------------ELGPGLFRGLAALQYLYLQDNALQ-AL-------PDDTFRD 151

Query: 316 LSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREI-GNMSQLQALDLSLNHIVGEIP 374
           L                  L  L +  N I+  +P      +  L  L L  N +   + 
Sbjct: 152 L----------------GNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVA-HVH 193

Query: 375 KE-LGKLNSLTKLILRGNQLTGRLPTEI-GSLIELEYLDFSAN 415
                 L  L  L L  N L+  LPTE    L  L+YL  + N
Sbjct: 194 PHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 98.6 bits (246), Expect = 1e-22
 Identities = 53/267 (19%), Positives = 92/267 (34%), Gaps = 16/267 (5%)

Query: 269 SENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSN 328
             N       +  +    L  + L  N ++    +A      L  + +S+N+   EI   
Sbjct: 62  QNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPP- 119

Query: 329 WGKCPKLGTLNVSMNNITGGIPREI-GNMSQLQALDLSLNHI-VGEIPKELGKLNSLTKL 386
                 L  L +  N I   +P+ +   +  +  +++  N +              L  L
Sbjct: 120 -NLPSSLVELRIHDNRIRK-VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYL 177

Query: 387 ILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELP 446
            +   +LT  +P        L  L    NK      E L    KL+ LGL +NQ  +   
Sbjct: 178 RISEAKLT-GIPK--DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN 234

Query: 447 KELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHG---- 502
             L  L  L EL   +N     +P  +  LK L+ + L  NN++ +  N F  +      
Sbjct: 235 GSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKR 293

Query: 503 --LSIIDISDNQLQGPVPNSTAFRNAP 527
              + I + +N +         FR   
Sbjct: 294 AYYNGISLFNNPVPYWEVQPATFRCVT 320

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 98.2 bits (245), Expect = 2e-22
 Identities = 68/360 (18%), Positives = 114/360 (31%), Gaps = 71/360 (19%)

Query: 142 PEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFEL 201
           P  C       +      L  ++P  +    +   L + NN +     + +    F    
Sbjct: 28  PFGCHCHL-RVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDI-----SELRKDDF---- 74

Query: 202 DLSFLPLSVGNLTNLKSLGLMDNHLSGSIPP-SFGN-SMLTWLTLSGNHFTGYLPHNICR 259
                      L +L +L L++N +S  I   +F     L  L +S NH           
Sbjct: 75  ---------KGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLV--------- 115

Query: 260 GGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRN 319
                            IP +L   +SL+ +R++ N +            N+  I++  N
Sbjct: 116 ----------------EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGN 157

Query: 320 NFY-GEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKE-L 377
                          KL  L +S   +TG IP+       L  L L  N I   I  E L
Sbjct: 158 PLENSGFEPGAFDGLKLNYLRISEAKLTG-IPK--DLPETLNELHLDHNKIQ-AIELEDL 213

Query: 378 GKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLS 437
            + + L +L L  NQ+       +  L  L  L    NK +  VP  L +L  L  + L 
Sbjct: 214 LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLH 272

Query: 438 NNQF------VLELPKELEKLVQLSELDASHN-LFGGEIP---FQICSLKSLEKLNLSHN 487
            N                 K    + +   +N +   E+    F+   +     +   + 
Sbjct: 273 TNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFR--CVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 96.2 bits (240), Expect = 7e-22
 Identities = 59/243 (24%), Positives = 100/243 (41%), Gaps = 27/243 (11%)

Query: 282 RNCT-SLIRVRLNGNNLT---GNISEALGLYPNLTFIDLSRNNFYGEISSN-WGKCPKLG 336
             C   L  V+ +   L      IS      P+ T +DL  N+   E+  + +     L 
Sbjct: 29  FGCHCHLRVVQCSDLGLKAVPKEIS------PDTTLLDLQNNDI-SELRKDDFKGLQHLY 81

Query: 337 TLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGR 396
            L +  N I+    +    + +LQ L +S NH+V EIP  L   +SL +L +  N++  +
Sbjct: 82  ALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIR-K 137

Query: 397 LPTEI-GSLIELEYLDFSANKFNNS-VPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQ 454
           +P  +   L  +  ++   N   NS       + LKL+YL +S  +    +PK+L     
Sbjct: 138 VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL--PET 194

Query: 455 LSELDASHNLFGGEIP---FQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDN 511
           L+EL   HN     I            L +L L HN +  +       +  L  + + +N
Sbjct: 195 LNELHLDHNKIQ-AIELEDLL--RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN 251

Query: 512 QLQ 514
           +L 
Sbjct: 252 KLS 254

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 95.5 bits (238), Expect = 1e-21
 Identities = 65/377 (17%), Positives = 123/377 (32%), Gaps = 85/377 (22%)

Query: 71  SFSSFPQLVHLDLSLNGF------------------FGTIPSQIGNLTKLSYISLDSNQL 112
           + S  P L  L  + +                       +P +I   T    + L +N +
Sbjct: 9   TTSGIPDLDSLPPTYSAMCPFGCHCHLRVVQCSDLGLKAVPKEISPDTT--LLDLQNNDI 66

Query: 113 SGKIPAEV-GLLTHLKVLSFQFNELDGSIPPEV-CQLSSIEELFLYSNHLNGSLPPFLGN 170
           S ++  +    L HL  L    N++   I  +    L  +++L++  NHL   +PP L  
Sbjct: 67  S-ELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLV-EIPPNL-- 121

Query: 171 LSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHL-SGS 229
            S++V L I++N +                            L N+  + +  N L +  
Sbjct: 122 PSSLVELRIHDNRIR------------------KVPKGVFSGLRNMNCIEMGGNPLENSG 163

Query: 230 IPP-SFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLI 288
             P +F    L +L +S    T  +P ++     L    +  N  Q    E L   + L 
Sbjct: 164 FEPGAFDGLKLNYLRISEAKLT-GIPKDLPET--LNELHLDHNKIQAIELEDLLRYSKLY 220

Query: 289 RVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGG 348
           R+ L  N +                  +   +            P L  L++  N ++  
Sbjct: 221 RLGLGHNQIR----------------MIENGSLSF--------LPTLRELHLDNNKLS-R 255

Query: 349 IPREIGNMSQLQALDLSLNHIVGEIPKE-------LGKLNSLTKLILRGNQLTGRL--PT 399
           +P  + ++  LQ + L  N+I  ++            K      + L  N +      P 
Sbjct: 256 VPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPA 314

Query: 400 EIGSLIELEYLDFSANK 416
               + +   + F   K
Sbjct: 315 TFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 70.4 bits (173), Expect = 3e-13
 Identities = 34/144 (23%), Positives = 54/144 (37%), Gaps = 6/144 (4%)

Query: 382 SLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQF 441
            L  +      L   +P EI    +   LD   N  +    +    L  L+ L L NN+ 
Sbjct: 34  HLRVVQCSDLGLK-AVPKEISP--DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 442 VLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMH 501
                K    L +L +L  S N    EIP  +    SL +L +  N +  +    F G+ 
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLR 147

Query: 502 GLSIIDISDNQLQGPVPNSTAFRN 525
            ++ I++  N L+       AF  
Sbjct: 148 NMNCIEMGGNPLENSGFEPGAFDG 171

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score = 96.7 bits (241), Expect = 4e-22
 Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 10/104 (9%)

Query: 616 YDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEV 675
            + +  ++           G  G V++A+L   E VAVK F       Q     +   EV
Sbjct: 16  TENLYFQSMPLQLLEVKARGRFGCVWKAQLL-NEYVAVKIFPI-----QDKQSWQNEYEV 69

Query: 676 QALTEIRHRNIVKFYGFCSHAQHS----FLVYEFLERGSLAAIL 715
            +L  ++H NI++F G            +L+  F E+GSL+  L
Sbjct: 70  YSLPGMKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFL 113

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score = 96.1 bits (240), Expect = 6e-22
 Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 7/106 (6%)

Query: 616 YDEIVRETNDFDAEYC------IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQK 669
           + E+   TN+FD          +G GG G VY+  +     VAVKK  + +       ++
Sbjct: 17  FYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVN-NTTVAVKKLAAMVDITTEELKQ 75

Query: 670 EFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
           +F  E++ + + +H N+V+  GF S      LVY ++  GSL   L
Sbjct: 76  QFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRL 121

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 95.7 bits (238), Expect = 8e-22
 Identities = 58/293 (19%), Positives = 94/293 (32%), Gaps = 36/293 (12%)

Query: 161 NGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLG 220
             SL   L  +     L    + +    L  +          + F  L V  ++ L+ L 
Sbjct: 42  GRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELT 101

Query: 221 LMDNHLSGSIPPSFG---NSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTI 277
           L +  ++G+ PP         L  L L    +             L+             
Sbjct: 102 LENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLK------------- 148

Query: 278 PESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKC----P 333
                    L  + +   +      E + ++P L+ +DLS N   GE       C    P
Sbjct: 149 -------PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFP 201

Query: 334 KLGTLNVSMNNIT---GGIPREIGNMSQLQALDLSLNHIVGEIPKEL-GKLNSLTKLILR 389
            L  L +    +    G          QLQ LDLS N +            + L  L L 
Sbjct: 202 TLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLS 261

Query: 390 GNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFV 442
              L  ++P  + +  +L  LD S N+  +  P S   L ++  L L  N F+
Sbjct: 262 FTGLK-QVPKGLPA--KLSVLDLSYNRL-DRNP-SPDELPQVGNLSLKGNPFL 309

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 87.6 bits (217), Expect = 4e-19
 Identities = 56/335 (16%), Positives = 99/335 (29%), Gaps = 68/335 (20%)

Query: 67  LRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHL 126
           L     S    L  +D   +    T   +  +L +L+  +             V  ++ L
Sbjct: 38  LYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGL 97

Query: 127 KVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSG 186
           + L+ +  E+ G+ PP + + +                        ++  L + N S + 
Sbjct: 98  QELTLENLEVTGTAPPPLLEAT----------------------GPDLNILNLRNVSWAT 135

Query: 187 SILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGN-SMLTWLTLS 245
                          D     L       LK L +   H              L+ L LS
Sbjct: 136 --------------RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLS 181

Query: 246 GNHFTG--YLPHNICRGGL--LEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNI 301
            N   G   L   +C      L+   +                             +G  
Sbjct: 182 DNPELGERGLISALCPLKFPTLQVLALRNAGM---------------------ETPSGVC 220

Query: 302 SEALGLYPNLTFIDLSRNNFYGEI-SSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQ 360
           S        L  +DLS N+      + +     +L +LN+S   +   +P+ +   ++L 
Sbjct: 221 SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLS 277

Query: 361 ALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTG 395
            LDLS N +    P     L  +  L L+GN    
Sbjct: 278 VLDLSYNRL-DRNPSPDE-LPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 86.9 bits (215), Expect = 9e-19
 Identities = 53/332 (15%), Positives = 95/332 (28%), Gaps = 67/332 (20%)

Query: 201 LDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSM-LTWLTLSGNHFTGYLPHNICR 259
           L  + + L  G  +    L  +D             S+ L  LT+        +     R
Sbjct: 31  LGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALR 90

Query: 260 GGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLY--PNLTFIDLS 317
                                +   + L  + L    +TG     L     P+L  ++L 
Sbjct: 91  ---------------------VLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLR 129

Query: 318 RNNFYGEISSNWG----KCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEI 373
             ++    +          P L  L+++  +       ++     L  LDLS N  +GE 
Sbjct: 130 NVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER 189

Query: 374 PKE----LGKLNSLTKLILRGNQLTGRLPTEIGSLIE----LEYLDFSANKFNNSVPESL 425
                    K  +L  L LR   +         +L      L+ LD S N   ++     
Sbjct: 190 GLISALCPLKFPTLQVLALRNAGME-TPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248

Query: 426 GNLL-KLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNL 484
            +   +L+ L LS      ++PK                               L  L+L
Sbjct: 249 CDWPSQLNSLNLSFTGLK-QVPK--------------------------GLPAKLSVLDL 281

Query: 485 SHNNLSGLIPNCFEGMHGLSIIDISDNQLQGP 516
           S+N L        + +  +  + +  N     
Sbjct: 282 SYNRLDRNPS--PDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 83.4 bits (206), Expect = 1e-17
 Identities = 50/258 (19%), Positives = 79/258 (30%), Gaps = 24/258 (9%)

Query: 273 FQGTIPE--SLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWG 330
           F    P+  S  NC     V L G            L   L  +D   +           
Sbjct: 17  FSDPKPDWSSAFNCLGAADVELYGGGR--------SLEYLLKRVDTEADLGQFTDIIKSL 68

Query: 331 KCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKL--NSLTKLIL 388
              +L      + +        +  +S LQ L L    + G  P  L +     L  L L
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128

Query: 389 RGNQLTGRLP--TEIGSLIE--LEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLE 444
           R      R     E+   ++  L+ L  +     N   E +     L  L LS+N  + E
Sbjct: 129 RNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE 188

Query: 445 LPKE----LEKLVQLSELDASHNLF---GGEIPFQICSLKSLEKLNLSHNNLSGLIPN-C 496
                     K   L  L   +       G       +   L+ L+LSHN+L        
Sbjct: 189 RGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248

Query: 497 FEGMHGLSIIDISDNQLQ 514
            +    L+ +++S   L+
Sbjct: 249 CDWPSQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 62.6 bits (152), Expect = 9e-11
 Identities = 36/210 (17%), Positives = 57/210 (27%), Gaps = 33/210 (15%)

Query: 53  VTNISLRN---TGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDS 109
           +  ++LRN         L +      P L  L ++          Q+     LS + L  
Sbjct: 123 LNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSD 182

Query: 110 NQLSGKI-------PAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNG 162
           N   G+        P +   L  L + +       G           ++ L L  N L  
Sbjct: 183 NPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD 242

Query: 163 SLPP-FLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGL 221
           +         S +  L ++   L                       +  G    L  L L
Sbjct: 243 AAGAPSCDWPSQLNSLNLSFTGLKQ---------------------VPKGLPAKLSVLDL 281

Query: 222 MDNHLSGSIPPSFGNSMLTWLTLSGNHFTG 251
             N L    P       +  L+L GN F  
Sbjct: 282 SYNRLD-RNPSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 59.9 bits (145), Expect = 8e-10
 Identities = 31/166 (18%), Positives = 56/166 (33%), Gaps = 10/166 (6%)

Query: 377 LGKLNSLTKLILRGNQLTGRLP-TEIGSLIELEYLDFSANKFNNSVPESLGNLL---KLH 432
            G   SL  L+ R +        T+I   + L+ L   A +  + +      +L    L 
Sbjct: 39  YGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQ 98

Query: 433 YLGLSNNQFVLELPKELEKLV--QLSELDASHNLFGGEIPF----QICSLKSLEKLNLSH 486
            L L N +     P  L +     L+ L+  +  +     +    Q      L+ L+++ 
Sbjct: 99  ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQ 158

Query: 487 NNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNSTAFRNAPVEALE 532
            +              LS +D+SDN   G     +A        L+
Sbjct: 159 AHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQ 204

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 57.2 bits (138), Expect = 6e-09
 Identities = 27/134 (20%), Positives = 42/134 (31%), Gaps = 6/134 (4%)

Query: 55  NISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSG 114
           N  L   GL   L    F +   L   +  +    G   +      +L  + L  N L  
Sbjct: 183 NPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD 242

Query: 115 KIPAEVGL-LTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSN 173
              A      + L  L+  F  L   +P      + +  L L  N L+ +  P    L  
Sbjct: 243 AAGAPSCDWPSQLNSLNLSFTGLK-QVPK--GLPAKLSVLDLSYNRLDRN--PSPDELPQ 297

Query: 174 IVRLYINNNSLSGS 187
           +  L +  N    S
Sbjct: 298 VGNLSLKGNPFLDS 311

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 93.5 bits (233), Expect = 3e-21
 Identities = 28/84 (33%), Positives = 36/84 (42%), Gaps = 1/84 (1%)

Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG 691
           IG GG G VYRA    G+ VAVK        D     +    E +    ++H NI+   G
Sbjct: 15  IGIGGFGKVYRAFW-IGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRG 73

Query: 692 FCSHAQHSFLVYEFLERGSLAAIL 715
            C    +  LV EF   G L  +L
Sbjct: 74  VCLKEPNLCLVMEFARGGPLNRVL 97

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 89.2 bits (222), Expect = 2e-20
 Identities = 29/160 (18%), Positives = 60/160 (37%), Gaps = 7/160 (4%)

Query: 333 PKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQ 392
             L  + ++  N+T      I     ++ L ++  H        +  L++L +L + G  
Sbjct: 44  NSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHA--TNYNPISGLSNLERLRIMGKD 99

Query: 393 LTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKL 452
           +T      +  L  L  LD S +  ++S+   +  L K++ + LS N   +     L+ L
Sbjct: 100 VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG-AITDIMPLKTL 158

Query: 453 VQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGL 492
            +L  L+   +        +      L +L      + G 
Sbjct: 159 PELKSLNIQFDGVHDYRGIE--DFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 88.9 bits (221), Expect = 2e-20
 Identities = 27/164 (16%), Positives = 62/164 (37%), Gaps = 7/164 (4%)

Query: 352 EIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLD 411
               M+ L  + L+  ++  ++   +   +++  L +     T      I  L  LE L 
Sbjct: 39  TEAQMNSLTYITLANINVT-DL-TGIEYAHNIKDLTINNIHATN--YNPISGLSNLERLR 94

Query: 412 FSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPF 471
                  +    +L  L  L  L +S++     +  ++  L +++ +D S+N    +I  
Sbjct: 95  IMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP 154

Query: 472 QICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQG 515
            + +L  L+ LN+  + +        E    L+ +      + G
Sbjct: 155 -LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 77.3 bits (191), Expect = 2e-16
 Identities = 37/184 (20%), Positives = 72/184 (39%), Gaps = 13/184 (7%)

Query: 73  SSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQ 132
           S+F   ++  L  +    T       +  L+YI+L +  ++  +   +    ++K L+  
Sbjct: 20  STFKAYLNGLLGQSS---TANITEAQMNSLTYITLANINVT-DLTG-IEYAHNIKDLTIN 74

Query: 133 FNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNI 192
                 +  P +  LS++E L +    +     P L  L+++  L I++++   SILT I
Sbjct: 75  NIHA-TNYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI 132

Query: 193 GNLKFLFELDLSFLPL-----SVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGN 247
             L  +  +DLS+         +  L  LKSL +  + +            L  L     
Sbjct: 133 NTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVH-DYRGIEDFPKLNQLYAFSQ 191

Query: 248 HFTG 251
              G
Sbjct: 192 TIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 75.8 bits (187), Expect = 7e-16
 Identities = 34/204 (16%), Positives = 68/204 (33%), Gaps = 35/204 (17%)

Query: 170 NLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLS----VGNLTNLKSLGLMDNH 225
                +   +  +S +      + +L     + L+ + ++    +    N+K L + + H
Sbjct: 21  TFKAYLNGLLGQSSTANITEAQMNSLT---YITLANINVTDLTGIEYAHNIKDLTINNIH 77

Query: 226 LSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCT 285
            + +  P  G S L  L + G   T                             +L   T
Sbjct: 78  AT-NYNPISGLSNLERLRIMGKDVTS------------------------DKIPNLSGLT 112

Query: 286 SLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNI 345
           SL  + ++ +    +I   +   P +  IDLS N    +I       P+L +LN+  + +
Sbjct: 113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPL-KTLPELKSLNIQFDGV 171

Query: 346 TGGIPREIGNMSQLQALDLSLNHI 369
                  I +  +L  L      I
Sbjct: 172 HDYRG--IEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 62.7 bits (153), Expect = 2e-11
 Identities = 19/134 (14%), Positives = 40/134 (29%), Gaps = 7/134 (5%)

Query: 380 LNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNN 439
             +    +L  +            +  L Y+  +     +     +     +  L ++N 
Sbjct: 22  FKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVTDL--TGIEYAHNIKDLTINNI 76

Query: 440 QFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEG 499
                    +  L  L  L         +    +  L SL  L++SH+     I      
Sbjct: 77  H--ATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT 134

Query: 500 MHGLSIIDISDNQL 513
           +  ++ ID+S N  
Sbjct: 135 LPKVNSIDLSYNGA 148

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 62.3 bits (152), Expect = 3e-11
 Identities = 16/115 (13%), Positives = 41/115 (35%), Gaps = 3/115 (2%)

Query: 72  FSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSF 131
            S    L  L +            +  LT L+ + +  +     I  ++  L  +  +  
Sbjct: 84  ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL 143

Query: 132 QFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSG 186
            +N     I P +  L  ++ L +  + ++      + +   + +LY  + ++ G
Sbjct: 144 SYNGAITDIMP-LKTLPELKSLNIQFDGVH-DYRG-IEDFPKLNQLYAFSQTIGG 195

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 89.0 bits (221), Expect = 1e-19
 Identities = 54/250 (21%), Positives = 87/250 (34%), Gaps = 32/250 (12%)

Query: 279 ESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISS--NWGKCPKLG 336
            S       I+  L   ++T  ++       ++  I  + ++    I S       P + 
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSD----IKSVQGIQYLPNVT 71

Query: 337 TLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGR 396
            L ++ N +T   P  + N+  L  L L  N +  ++   L  L  L  L L  N ++  
Sbjct: 72  KLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSLEHNGIS-- 125

Query: 397 LPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLS 456
               +  L +LE L    NK  +     L  L KL  L L +NQ  +     L  L +L 
Sbjct: 126 DINGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQ--ISDIVPLAGLTKLQ 181

Query: 457 ELDASHNLFGGEIPFQICS------LKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISD 510
            L  S N         I        LK+L+ L L          N    +   + +  +D
Sbjct: 182 NLYLSKN--------HISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTD 233

Query: 511 NQLQGPVPNS 520
             L  P   S
Sbjct: 234 GSLVTPEIIS 243

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 84.3 bits (209), Expect = 4e-18
 Identities = 50/278 (17%), Positives = 96/278 (34%), Gaps = 47/278 (16%)

Query: 168 LGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLS----VGNLTNLKSLGLMD 223
               +  ++  +   S++         L  + ++  +   +     +  L N+  L L  
Sbjct: 20  DDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNG 77

Query: 224 NHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRN 283
           N L+  I P      L WL L  N        ++                      SL++
Sbjct: 78  NKLT-DIKPLANLKNLGWLFLDENKVK-----DL---------------------SSLKD 110

Query: 284 CTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEIS--SNWGKCPKLGTLNVS 341
              L  + L  N ++ +I   L   P L  + L  N     I+  +   +  KL TL++ 
Sbjct: 111 LKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNK----ITDITVLSRLTKLDTLSLE 164

Query: 342 MNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEI 401
            N I+  +P  +  +++LQ L LS NHI     + L  L +L  L L   +   +     
Sbjct: 165 DNQISDIVP--LAGLTKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQ 220

Query: 402 GSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNN 439
            +L+    +  +        PE + +        +  +
Sbjct: 221 SNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKWH 256

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 78.6 bits (194), Expect = 4e-16
 Identities = 57/277 (20%), Positives = 102/277 (36%), Gaps = 19/277 (6%)

Query: 70  FSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVL 129
           FS  +F + +  +L       T       L  +  I  +++ +   +   +  L ++  L
Sbjct: 18  FSDDAFAETIKDNLKKKSV--TDAVTQNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKL 73

Query: 130 SFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSIL 189
               N+L   I P +  L ++  LFL  N +   L   L +L  +  L + +N +  S +
Sbjct: 74  FLNGNKLT-DIKP-LANLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSLEHNGI--SDI 127

Query: 190 TNIGNLKFLFELDLSFLPLS----VGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLS 245
             + +L  L  L L    ++    +  LT L +L L DN +S  I P  G + L  L LS
Sbjct: 128 NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS-DIVPLAGLTKLQNLYLS 186

Query: 246 GNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVR-LNGNNLTGNISEA 304
            NH +      +     L+   +              N      V+  +G+ +T  I   
Sbjct: 187 KNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISD 244

Query: 305 LGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVS 341
            G Y     +      F  E+S  + +   +G     
Sbjct: 245 DGDYEKPN-VKWHLPEFTNEVSFIFYQPVTIGKAKAR 280

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 75.9 bits (187), Expect = 3e-15
 Identities = 51/281 (18%), Positives = 101/281 (35%), Gaps = 45/281 (16%)

Query: 212 NLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSEN 271
                    L    ++ ++  +  NS +  +  + +        ++              
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQNELNS-IDQIIANNSDIK-----SV-------------- 61

Query: 272 HFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEIS--SNW 329
                  + ++   ++ ++ LNGN LT +I   L    NL ++ L  N     +   S+ 
Sbjct: 62  -------QGIQYLPNVTKLFLNGNKLT-DIKP-LANLKNLGWLFLDENK----VKDLSSL 108

Query: 330 GKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILR 389
               KL +L++  N I+      + ++ QL++L L  N I       L +L  L  L L 
Sbjct: 109 KDLKKLKSLSLEHNGISDING--LVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLE 164

Query: 390 GNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKEL 449
            NQ++      +  L +L+ L  S N  ++    +L  L  L  L L + + + +     
Sbjct: 165 DNQISD--IVPLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECLNKPINHQ 220

Query: 450 EKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLS 490
             LV  + +  +        P  I      EK N+  +   
Sbjct: 221 SNLVVPNTVKNTDGSL--VTPEIISDDGDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 36/163 (22%), Positives = 57/163 (34%), Gaps = 11/163 (6%)

Query: 72  FSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSF 131
               PQL  L L  N    T  + +  LTKL  +SL+ NQ+S  I   +  LT L+ L  
Sbjct: 130 LVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYL 185

Query: 132 QFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTN 191
             N +   +   +  L +++ L L+S            NL     +   + SL       
Sbjct: 186 SKNHIS-DLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT--PEI 241

Query: 192 IGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSF 234
           I +     + ++ +        TN  S         G     F
Sbjct: 242 ISDDGDYEKPNVKWHLP---EFTNEVSFIFYQPVTIGKAKARF 281

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 89.3 bits (222), Expect = 1e-19
 Identities = 38/108 (35%), Positives = 53/108 (49%), Gaps = 3/108 (2%)

Query: 608 LNFEGKLVYDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIAD 667
           L F+G +  D++     D + +  IG G  G+V+RAE   G  VAVK             
Sbjct: 21  LYFQGAMDGDDMDIPWCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILME--QDFHAER 77

Query: 668 QKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
             EFL EV  +  +RH NIV F G  +   +  +V E+L RGSL  +L
Sbjct: 78  VNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLL 125

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score = 89.1 bits (221), Expect = 2e-19
 Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 15/108 (13%)

Query: 616 YDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTE- 674
             E   + ++      IG G +G+VY+  L     VAVK F  +       +++ F+ E 
Sbjct: 5   ASEPSLDLDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFA-------NRQNFINEK 56

Query: 675 -VQALTEIRHRNIVKFYGFCSHAQHS-----FLVYEFLERGSLAAILS 716
            +  +  + H NI +F                LV E+   GSL   LS
Sbjct: 57  NIYRVPLMEHDNIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYLS 104

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 89.0 bits (221), Expect = 3e-19
 Identities = 46/308 (14%), Positives = 95/308 (30%), Gaps = 52/308 (16%)

Query: 214 TNLKSLGLMDNHLSGSIPPS-FGN-SMLTWLTLSGNHFTGYLPHNICRG-GLLEAFIVSE 270
             +KSL L +N ++  I  S       L  L L+ N     +  +     G LE   +S 
Sbjct: 52  EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSY 109

Query: 271 NHFQGTIPESLRNCTSLIRVRLNGNNLTGNISE--ALGLYPNLTFIDLSRNNFYGEISSN 328
           N+         +  +SL  + L GN     + E         L  + +   + + +I   
Sbjct: 110 NYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRK 168

Query: 329 W-GKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKEL-GKLNSLTKL 386
                  L  L +  +++    P+ + ++  +  L L +   +  + +      +S+  L
Sbjct: 169 DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECL 227

Query: 387 ILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELP 446
            LR   L     +E+ +                    SL        + +++        
Sbjct: 228 ELRDTDLDTFHFSELSTG----------------ETNSLIKKFTFRNVKITDESLF---- 267

Query: 447 KELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSII 506
                                ++   +  +  L +L  S N L  +    F+ +  L  I
Sbjct: 268 ---------------------QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKI 306

Query: 507 DISDNQLQ 514
            +  N   
Sbjct: 307 WLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 88.3 bits (219), Expect = 5e-19
 Identities = 49/269 (18%), Positives = 86/269 (31%), Gaps = 26/269 (9%)

Query: 75  FPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEV-GLLTHLKVLSFQF 133
              +  LDLS N       S +     L  + L SN ++  I  +    L  L+ L   +
Sbjct: 51  TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSY 109

Query: 134 NELDGSIPPEVCQ-LSSIEELFLYSNHLNGSLPP--FLGNLSNIVRLYINNNSLSGSILT 190
           N L  ++     + LSS+  L L  N    +L       +L+ +  L + N      I  
Sbjct: 110 NYL-SNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQR 167

Query: 191 NI-GNLKFLFELDLSFLPLSV------GNLTNLKSLGLMDNHLSGSIPPSF--GNSMLTW 241
                L FL EL++    L         ++ N+  L L        +   F    S +  
Sbjct: 168 KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVEC 226

Query: 242 LTLSGNHFTGYLPHNICRG--------GLLEAFIVSENHFQGTIPESLRNCTSLIRVRLN 293
           L L       +    +  G               +++      + + L   + L+ +  +
Sbjct: 227 LELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFS 285

Query: 294 GNNLTGNISEALGLYPNLTFIDLSRNNFY 322
            N L            +L  I L  N + 
Sbjct: 286 RNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 87.9 bits (218), Expect = 7e-19
 Identities = 42/244 (17%), Positives = 90/244 (36%), Gaps = 17/244 (6%)

Query: 285 TSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNW-GKCPKLGTLNVSMN 343
            ++  + L+ N +T   +  L    NL  + L+ N     I  +       L  L++S N
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI-NTIEEDSFSSLGSLEHLDLSYN 110

Query: 344 NITGGIPREI-GNMSQLQALDLSLNHIVGEIPKE--LGKLNSLTKLILRGNQLTGRLPTE 400
            ++  +       +S L  L+L  N     + +      L  L  L +       ++  +
Sbjct: 111 YLSN-LSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRK 168

Query: 401 I-GSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELD 459
               L  LE L+  A+   +  P+SL ++  + +L L   Q +L L   ++    +  L+
Sbjct: 169 DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLE 228

Query: 460 ASHNLFGGEIPFQICS--------LKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDN 511
                       ++ +          +   + ++  +L   +      + GL  ++ S N
Sbjct: 229 LRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ-VMKLLNQISGLLELEFSRN 287

Query: 512 QLQG 515
           QL+ 
Sbjct: 288 QLKS 291

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 79.8 bits (197), Expect = 3e-16
 Identities = 43/186 (23%), Positives = 74/186 (39%), Gaps = 7/186 (3%)

Query: 332 CPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGN 391
           C + G    S  ++   IP  +     +++LDLS N I      +L +  +L  L+L  N
Sbjct: 30  CDRNGICKGSSGSLNS-IPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN 86

Query: 392 QLTGRLPTEI-GSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFV-LELPKEL 449
            +   +  +   SL  LE+LD S N  +N        L  L +L L  N +  L      
Sbjct: 87  GIN-TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLF 145

Query: 450 EKLVQLSELDASHNLFGGEIPFQI-CSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDI 508
             L +L  L   +     +I  +    L  LE+L +  ++L    P   + +  +S + +
Sbjct: 146 SHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 205

Query: 509 SDNQLQ 514
              Q  
Sbjct: 206 HMKQHI 211

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 74.0 bits (182), Expect = 2e-14
 Identities = 36/204 (17%), Positives = 71/204 (34%), Gaps = 22/204 (10%)

Query: 66  TLRDFSFSSFPQLVHLDLSLNGFFGTIPSQI-GNLTKLSYISLDSNQLSGKIPAEV-GLL 123
            L    F     L  L+L  N +     + +  +LTKL  + + +     KI  +    L
Sbjct: 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL 173

Query: 124 THLKVLSFQFNELDGSIPPEVCQ-LSSIEELFLYSNHLNGSLPP-FLGNLSNIVRLYINN 181
           T L+ L    ++L  S  P+  + + ++  L L+       L   F+   S++  L + +
Sbjct: 174 TFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRD 231

Query: 182 NSLSGSILTNIGNLKF--------LFELDLSFLPLSVG-----NLTNLKSLGLMDNHLSG 228
             L     + +   +            + ++   L         ++ L  L    N L  
Sbjct: 232 TDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK- 290

Query: 229 SIPPSF--GNSMLTWLTLSGNHFT 250
           S+P       + L  + L  N + 
Sbjct: 291 SVPDGIFDRLTSLQKIWLHTNPWD 314

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score = 87.4 bits (217), Expect = 5e-19
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 9/92 (9%)

Query: 624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRH 683
            + + E  +G G  G V +A+    + VA+K+  S       +++K F+ E++ L+ + H
Sbjct: 8   KEIEVEEVVGRGAFGVVCKAKW-RAKDVAIKQIESE------SERKAFIVELRQLSRVNH 60

Query: 684 RNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
            NIVK YG C       LV E+ E GSL  +L
Sbjct: 61  PNIVKLYGACL--NPVCLVMEYAEGGSLYNVL 90

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 85.8 bits (213), Expect = 1e-18
 Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 6/96 (6%)

Query: 624 NDFDAEYCIGNGGHGSVYRAELPS-GEVVAVKKFHSSIPCDQIADQ---KEFLTEVQALT 679
           N+ + E  IG GG G V++  L     VVA+K         +       +EF  EV  ++
Sbjct: 19  NEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMS 78

Query: 680 EIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
            + H NIVK YG         +V EF+  G L   L
Sbjct: 79  NLNHPNIVKLYGLMH--NPPRMVMEFVPCGDLYHRL 112

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 82.5 bits (204), Expect = 2e-17
 Identities = 47/170 (27%), Positives = 70/170 (41%), Gaps = 15/170 (8%)

Query: 348 GIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIEL 407
            +P++         L LS N +       L     LT+L L   +LT +L  + G+L  L
Sbjct: 28  DLPKD------TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-GTLPVL 79

Query: 408 EYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGG 467
             LD S N+   S+P     L  L  L +S N+        L  L +L EL    N    
Sbjct: 80  GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK- 137

Query: 468 EIP---FQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQ 514
            +P           LEKL+L++NNL+ L      G+  L  + + +N L 
Sbjct: 138 TLPPGLLT--PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 80.5 bits (199), Expect = 8e-17
 Identities = 56/198 (28%), Positives = 80/198 (40%), Gaps = 30/198 (15%)

Query: 54  TNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLS 113
           T + L    L  T    +   + +L  L+L       T     G L  L  + L  NQL 
Sbjct: 34  TILHLSENLLY-TFSLATLMPYTRLTQLNLDRAEL--TKLQVDGTLPVLGTLDLSHNQLQ 90

Query: 114 GKIPAEVGLLTHLKVLSFQFNELDGSIPPEV-CQLSSIEELFLYSNHLNGSLPP-FLGNL 171
             +P     L  L VL   FN L  S+P      L  ++EL+L  N L  +LPP  L   
Sbjct: 91  -SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLTPT 147

Query: 172 SNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSV-GNLTNLKSLGLMDNHLSGSI 230
             + +L + NN+L+                    LP  +   L NL +L L +N L  +I
Sbjct: 148 PKLEKLSLANNNLTE-------------------LPAGLLNGLENLDTLLLQENSLY-TI 187

Query: 231 PPS-FGNSMLTWLTLSGN 247
           P   FG+ +L +  L GN
Sbjct: 188 PKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 77.1 bits (190), Expect = 1e-15
 Identities = 52/208 (25%), Positives = 80/208 (38%), Gaps = 20/208 (9%)

Query: 98  NLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEV-CQLSSIEELFLY 156
            +     ++ D   L+  +P    L     +L    N L  +         + + +L L 
Sbjct: 8   KVASHLEVNCDKRNLT-ALPP--DLPKDTTILHLSENLL-YTFSLATLMPYTRLTQLNLD 63

Query: 157 SNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSF-----LPLSV- 210
              L   L    G L  +  L +++N L  S+      L  L  LD+SF     LPL   
Sbjct: 64  RAELT-KLQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120

Query: 211 GNLTNLKSLGLMDNHLSGSIPPS-FGN-SMLTWLTLSGNHFTGYLPHNICRG-GLLEAFI 267
             L  L+ L L  N L  ++PP        L  L+L+ N+ T  LP  +  G   L+  +
Sbjct: 121 RGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLL 178

Query: 268 VSENHFQGTIPESLRNCTSLIRVRLNGN 295
           + EN    TIP+       L    L+GN
Sbjct: 179 LQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 74.8 bits (184), Expect = 7e-15
 Identities = 61/234 (26%), Positives = 90/234 (38%), Gaps = 35/234 (14%)

Query: 280 SLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLN 339
            +    S + V  +  NLT   +    L  + T + LS N  Y    +      +L  LN
Sbjct: 5   EVSKVASHLEVNCDKRNLT---ALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 340 VSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPT 399
           +    +T  +    G +  L  LDLS N +   +P     L +LT L +  N+LT  LP 
Sbjct: 62  LDRAELTK-LQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPL 117

Query: 400 EI-GSLIELEYLDFSANKFNNSVPESL-GNLLKLHYLGLSNNQFVLELPKELEKLVQLSE 457
                L EL+ L    N+   ++P  L     KL  L L+NN               L+E
Sbjct: 118 GALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNN--------------LTE 162

Query: 458 LDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDN 511
           L     L  G        L++L+ L L  N+L  +    F G H L    +  N
Sbjct: 163 L--PAGLLNG--------LENLDTLLLQENSLYTIPKGFF-GSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 64.0 bits (156), Expect = 3e-11
 Identities = 48/190 (25%), Positives = 70/190 (36%), Gaps = 17/190 (8%)

Query: 139 SIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFL 198
           ++PP++        L L  N L       L   + + +L ++   L  + L   G L  L
Sbjct: 24  ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL--TKLQVDGTLPVL 79

Query: 199 FELDLSF-----LPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSM--LTWLTLSGNHFTG 251
             LDLS      LPL    L  L  L +  N L+ S+P      +  L  L L GN    
Sbjct: 80  GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK- 137

Query: 252 YLPHNICRG-GLLEAFIVSENHFQGTIPESL-RNCTSLIRVRLNGNNLTGNISEALGLYP 309
            LP  +      LE   ++ N+    +P  L     +L  + L  N+L        G   
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS-H 195

Query: 310 NLTFIDLSRN 319
            L F  L  N
Sbjct: 196 LLPFAFLHGN 205

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score = 82.4 bits (204), Expect = 2e-17
 Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 5/85 (5%)

Query: 632 IGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
           +G G  G   +     +GEV+ +K+            Q+ FL EV+ +  + H N++KF 
Sbjct: 18  LGKGCFGQAIKVTHRETGEVMVMKELIRFDE----ETQRTFLKEVKVMRCLEHPNVLKFI 73

Query: 691 GFCSHAQHSFLVYEFLERGSLAAIL 715
           G     +    + E+++ G+L  I+
Sbjct: 74  GVLYKDKRLNFITEYIKGGTLRGII 98

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 82.4 bits (204), Expect = 3e-17
 Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 4/84 (4%)

Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG 691
           IG G  G VY      GEV A++        +     K F  EV A  + RH N+V F G
Sbjct: 41  IGKGRFGQVYHGRW-HGEV-AIRLIDIERDNEDQL--KAFKREVMAYRQTRHENVVLFMG 96

Query: 692 FCSHAQHSFLVYEFLERGSLAAIL 715
            C    H  ++    +  +L +++
Sbjct: 97  ACMSPPHLAIITSLCKGRTLYSVV 120

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 80.4 bits (199), Expect = 7e-17
 Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 5/86 (5%)

Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG 691
           +     G +++     G  + VK         + +  ++F  E   L    H N++   G
Sbjct: 18  LNENHSGELWKGRW-QGNDIVVKVLKVRDWSTRKS--RDFNEECPRLRIFSHPNVLPVLG 74

Query: 692 FCSH--AQHSFLVYEFLERGSLAAIL 715
            C    A H  L+  ++  GSL  +L
Sbjct: 75  ACQSPPAPHPTLITHWMPYGSLYNVL 100

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 80.3 bits (198), Expect = 2e-16
 Identities = 44/177 (24%), Positives = 70/177 (39%), Gaps = 20/177 (11%)

Query: 348 GIPREIGNMSQLQALDLSLNHIVGEIPKE--LGKLNSLTKLILRGNQLTGRLPTEI-GSL 404
            +P           LDLS N++   +  E    +L +L  L+L  N L   + +E    +
Sbjct: 36  SLPSYT------ALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPV 87

Query: 405 IELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKE-LEKLVQLSELDASHN 463
             L YLD S+N  +        +L  L  L L NN  V  + +   E + QL +L  S N
Sbjct: 88  PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQN 146

Query: 464 LFGGEIPFQI----CSLKSLEKLNLSHNNLSGLIPNCFEGMHGLS--IIDISDNQLQ 514
                 P ++      L  L  L+LS N L  L     + +       + + +N L+
Sbjct: 147 QIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 66.4 bits (162), Expect = 8e-12
 Identities = 38/165 (23%), Positives = 70/165 (42%), Gaps = 15/165 (9%)

Query: 75  FPQLVHLDLSLNGFFGTIPSQI--GNLTKLSYISLDSNQLSGKIPAEV-GLLTHLKVLSF 131
                 LDLS N     + ++     LT L  + L  N L+  I +E    + +L+ L  
Sbjct: 38  PSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDL 95

Query: 132 QFNELDGSIPPEVCQ-LSSIEELFLYSNHLNGSLPPF-LGNLSNIVRLYINNNSLS---G 186
             N L  ++   +   L ++E L LY+NH+   +      +++ + +LY++ N +S    
Sbjct: 96  SSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPV 153

Query: 187 SILTNIGNLKFLFELDLS---FLPLSVGNLTNLKSLGLMDNHLSG 228
            ++ +   L  L  LDLS      L + +L  L +      +L  
Sbjct: 154 ELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 65.2 bits (159), Expect = 2e-11
 Identities = 33/160 (20%), Positives = 63/160 (39%), Gaps = 11/160 (6%)

Query: 53  VTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQI-GNLTKLSYISLDSNQ 111
              + L +  LS    +++ +    L  L LS N     I S+    +  L Y+ L SN 
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNH 99

Query: 112 LSGKIPAEV-GLLTHLKVLSFQFNELDGSIPPEV-CQLSSIEELFLYSNHLNGSLPP--- 166
           L   +   +   L  L+VL    N +   +       ++ +++L+L  N ++   P    
Sbjct: 100 LH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELI 156

Query: 167 -FLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSF 205
                L  ++ L +++N L    LT++  L    +  L  
Sbjct: 157 KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYL 196

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 54.5 bits (131), Expect = 5e-08
 Identities = 37/226 (16%), Positives = 66/226 (29%), Gaps = 71/226 (31%)

Query: 148 SSIEELFLYSNHLNGSLPP--FLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSF 205
           S    L L  N+L   L        L+N+  L +++N L+                   F
Sbjct: 39  SYTALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLN-------------------F 78

Query: 206 LPLSV-GNLTNLKSLGLMDNHLSGSIPP-SF-GNSMLTWLTLSGNHFTGYLPHNICRGGL 262
           +       + NL+ L L  NHL  ++    F     L  L L  NH    +         
Sbjct: 79  ISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVD-------- 128

Query: 263 LEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFY 322
                            +  +   L ++ L+ N ++                        
Sbjct: 129 ---------------RNAFEDMAQLQKLYLSQNQIS----------------RFPVELI- 156

Query: 323 GEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNH 368
                +  K PKL  L++S N +      ++  +       L L++
Sbjct: 157 ----KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 80.4 bits (199), Expect = 5e-16
 Identities = 58/356 (16%), Positives = 104/356 (29%), Gaps = 59/356 (16%)

Query: 214 TNLKSLGLMDNHLS--GSIPPSFGNSMLTWLTLSGNHFT--------GYLPHNICRGGLL 263
            +++SL +    LS                + L     T          L  N      L
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPA----L 58

Query: 264 EAFIVSENHFQG----TIPESLRNC-TSLIRVRLNGNNLT----GNISEALGLYPNLTFI 314
               +  N         + + L+     + ++ L    LT    G +S  L   P L  +
Sbjct: 59  AELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQEL 118

Query: 315 DLSRNNFYGE-----ISSNWGKCPKLGTLNVSMNNITGGIPREIGNM----SQLQALDLS 365
            LS N                   +L  L +   +++      + ++       + L +S
Sbjct: 119 HLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVS 178

Query: 366 LNHIVGEIPKELGKL-----NSLTKLILRGNQLTGRLPTEIGSLIE----LEYLDFSANK 416
            N I     + L +        L  L L    +T     ++  ++     L  L   +NK
Sbjct: 179 NNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238

Query: 417 FNNSVPESLGNLLK-----LHYLGLSNNQF----VLELPKELEKLVQLSELDASHNLFGG 467
             +     L   L      L  L +           +L + L     L EL  + N  G 
Sbjct: 239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD 298

Query: 468 EIPFQICSL-----KSLEKLNLSHNNLSGL----IPNCFEGMHGLSIIDISDNQLQ 514
           E    +C         LE L +   + +        +       L  + IS+N+L+
Sbjct: 299 EGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 354

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 80.0 bits (198), Expect = 6e-16
 Identities = 81/460 (17%), Positives = 144/460 (31%), Gaps = 100/460 (21%)

Query: 78  LVHLDLSLNGF-FGTIPSQIGNLTKLSYISLDSNQLSGK----IPAEVGLLTHLKVLSFQ 132
           +  LD+             +  L +   + LD   L+      I + + +   L  L+ +
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 133 FNELDGSIPPEVCQL-----SSIEELFLYSNHLN----GSLPPFLGNLSNIVRLYINNNS 183
            NEL       V Q        I++L L +  L     G L   L  L  +  L++++N 
Sbjct: 65  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124

Query: 184 LSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFG-----NSM 238
           L  +       L+ L E  L            L+ L L    LS +              
Sbjct: 125 LGDA------GLQLLCEGLLD-------PQCRLEKLQLEYCSLSAASCEPLASVLRAKPD 171

Query: 239 LTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCT-SLIRVRLNGNNL 297
              LT+S N        +I   G+              + + L++    L  ++L    +
Sbjct: 172 FKELTVSNN--------DINEAGVRV------------LCQGLKDSPCQLEALKLESCGV 211

Query: 298 T----GNISEALGLYPNLTFIDLSRNNFYGE----ISSNWGKC-PKLGTLNVSMNNIT-- 346
           T     ++   +    +L  + L  N         +         +L TL +    IT  
Sbjct: 212 TSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAK 271

Query: 347 --GGIPREIGNMSQLQALDLSLNHIVGEIPKELGKL-----NSLTKLILRGNQLTGRLPT 399
             G + R +     L+ L L+ N +  E  + L +        L  L ++    T    +
Sbjct: 272 GCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCS 331

Query: 400 EIGSLIE----LEYLDFSANKFNNSVPESLGNLLK-----LHYLGLSNNQFVLELPKELE 450
              S++     L  L  S N+  ++    L   L      L  L L++          L 
Sbjct: 332 HFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA 391

Query: 451 KLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLS 490
             +                     +  SL +L+LS+N L 
Sbjct: 392 ATLL--------------------ANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 61.5 bits (150), Expect = 5e-10
 Identities = 40/183 (21%), Positives = 63/183 (34%), Gaps = 24/183 (13%)

Query: 356 MSQ-LQALDLSLNHIVGEIPKELGKLNS-LTKLILRGNQLTGRLPTEIGSLIE----LEY 409
           MS  +Q+LD+    +      EL  L      + L    LT     +I S +     L  
Sbjct: 1   MSLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 60

Query: 410 LDFSANKFNNSVPESLGNLLK-----LHYLGLSNNQF----VLELPKELEKLVQLSELDA 460
           L+  +N+  +     +   L+     +  L L N          L   L  L  L EL  
Sbjct: 61  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120

Query: 461 SHNLFGGEIPFQICSL-----KSLEKLNLSHNNLS----GLIPNCFEGMHGLSIIDISDN 511
           S NL G      +C         LEKL L + +LS      + +          + +S+N
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180

Query: 512 QLQ 514
            + 
Sbjct: 181 DIN 183

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 52.3 bits (126), Expect = 4e-07
 Identities = 57/329 (17%), Positives = 104/329 (31%), Gaps = 63/329 (19%)

Query: 52  RVTNISLRNTGLSGT-LRDFS--FSSFPQLVHLDLSLN-----GFFGTIPSQIGNLTKLS 103
           ++  +SL+N  L+G      S    + P L  L LS N     G        +    +L 
Sbjct: 86  KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLE 145

Query: 104 YISLDSNQLSGKIPAEVGLL----THLKVLSFQFNELDGSIPPEVCQL-----SSIEELF 154
            + L+   LS      +  +       K L+   N+++ +    +CQ        +E L 
Sbjct: 146 KLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALK 205

Query: 155 LYSNHLN----GSLPPFLGNLSNIVRLYINNNSLSGSILTNIGN-----LKFLFELDLS- 204
           L S  +       L   + + +++  L + +N L    +  +          L  L +  
Sbjct: 206 LESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE 265

Query: 205 ---------FLPLSVGNLTNLKSLGLMDNHLSGSIPPSFG------NSMLTWLTLSGNHF 249
                     L   +    +LK L L  N L                  L  L +    F
Sbjct: 266 CGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF 325

Query: 250 TG--------YLPHNICRGGLLEAFIVSENHFQGT----IPESLRNC-TSLIRVRLNGNN 296
           T          L  N      L    +S N  +      + + L    + L  + L   +
Sbjct: 326 TAACCSHFSSVLAQNRF----LLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 381

Query: 297 LT----GNISEALGLYPNLTFIDLSRNNF 321
           ++     +++  L    +L  +DLS N  
Sbjct: 382 VSDSSCSSLAATLLANHSLRELDLSNNCL 410

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 77.3 bits (191), Expect = 7e-16
 Identities = 55/213 (25%), Positives = 86/213 (40%), Gaps = 10/213 (4%)

Query: 306 GLYPNLTFIDLSRNNFYGEISSN-WGKCPKLGTLNVSMNNITGGIPREI-GNMSQLQALD 363
            L  +   +DLS N     + S  +   P+L  L++S   I   I      ++S L  L 
Sbjct: 25  NLPFSTKNLDLSFNPL-RHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLI 82

Query: 364 LSLNHIVGEIPKEL-GKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNN-SV 421
           L+ N I   +       L+SL KL+     L       IG L  L+ L+ + N   +  +
Sbjct: 83  LTGNPI-QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 141

Query: 422 PESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFG---GEIPFQICSLKS 478
           PE   NL  L +L LS+N+       +L  L Q+  L+ S +L       I         
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 201

Query: 479 LEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDN 511
           L++L L  N L  +    F+ +  L  I +  N
Sbjct: 202 LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 73.5 bits (181), Expect = 2e-14
 Identities = 47/208 (22%), Positives = 77/208 (37%), Gaps = 27/208 (12%)

Query: 71  SFSSFPQ-----LVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEV-GLLT 124
           +F   P        +LDLS N           +  +L  + L   ++   I       L+
Sbjct: 18  NFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLS 76

Query: 125 HLKVLSFQFNELDGSIPPEV-CQLSSIEELFLYSNHLNGSLPPFL-GNLSNIVRLYINNN 182
           HL  L    N +  S+       LSS+++L     +L  SL  F  G+L  +  L + +N
Sbjct: 77  HLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHN 134

Query: 183 SL----SGSILTNIGNLKFLFELD---LSFLPLSV-GNLTNLK----SLGLMDNHLSGSI 230
            +         +N+ NL+ L  L    +  +  +    L  +     SL L  N ++  I
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLD-LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FI 192

Query: 231 PP-SFGNSMLTWLTLSGNHFTGYLPHNI 257
            P +F    L  L L  N     +P  I
Sbjct: 193 QPGAFKEIRLKELALDTNQLK-SVPDGI 219

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 65.0 bits (159), Expect = 1e-11
 Identities = 34/169 (20%), Positives = 56/169 (33%), Gaps = 33/169 (19%)

Query: 348 GIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEI-GSLIE 406
            +P         + LDLS N +             L  L L   ++   +      SL  
Sbjct: 25  NLP------FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSH 77

Query: 407 LEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFG 466
           L  L  + N   +    +   L  L  L                    L+ L+       
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN--------------LASLENF----- 118

Query: 467 GEIPFQICSLKSLEKLNLSHNNLSGLI-PNCFEGMHGLSIIDISDNQLQ 514
              P     LK+L++LN++HN +     P  F  +  L  +D+S N++Q
Sbjct: 119 ---PIGH--LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 62.3 bits (152), Expect = 9e-11
 Identities = 45/233 (19%), Positives = 76/233 (32%), Gaps = 33/233 (14%)

Query: 214 TNLKSLGLMDNHLSGSIPP-SFGN-SMLTWLTLSGNHFTGYLPHNICRG-GLLEAFIVSE 270
            + K+L L  N L   +   SF +   L  L LS       +     +    L   I++ 
Sbjct: 28  FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTG 85

Query: 271 NHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWG 330
           N  Q     +    +SL ++     NL    +  +G    L  ++++ N     I S   
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL----IQS--- 138

Query: 331 KCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLT----KL 386
                   +               N++ L+ LDLS N I      +L  L+ +      L
Sbjct: 139 -FKLPEYFS---------------NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182

Query: 387 ILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNN 439
            L  N +   +       I L+ L    N+  +        L  L  + L  N
Sbjct: 183 DLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 77.8 bits (192), Expect = 8e-16
 Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 14/91 (15%)

Query: 631 CIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFL--TEVQALTEIRHRNIVK 688
           C+G G +G V+R     GE VAVK F S        D+K +   TE+     +RH NI+ 
Sbjct: 15  CVGKGRYGEVWRGSW-QGENVAVKIFSSR-------DEKSWFRETELYNTVMLRHENILG 66

Query: 689 FYGFCSHAQHS----FLVYEFLERGSLAAIL 715
           F      ++HS    +L+  + E GSL   L
Sbjct: 67  FIASDMTSRHSSTQLWLITHYHEMGSLYDYL 97

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 78.3 bits (193), Expect = 9e-16
 Identities = 37/241 (15%), Positives = 82/241 (34%), Gaps = 12/241 (4%)

Query: 278 PESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSN-WGKCPKLG 336
              + +C++ +      + +T        L  N   +          I    +     L 
Sbjct: 3   HHRICHCSNRV-FLCQESKVT---EIPSDLPRNAIELRFVLTKLR-VIQKGAFSGFGDLE 57

Query: 337 TLNVSMNNITGGIPREI-GNMSQLQALDLS-LNHIVGEIPKELGKLNSLTKLILRGNQLT 394
            + +S N++   I  ++  N+ +L  + +   N+++   P+    L +L  L++    + 
Sbjct: 58  KIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK 117

Query: 395 GRLPTEIGSLIELEYLDFSANKFNNSVPESL--GNLLKLHYLGLSNNQFVLELPKELEKL 452
                     ++   LD   N   +++  +   G   +   L L+ N    E+       
Sbjct: 118 HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNG 176

Query: 453 VQLSELDASHNLFGGEIPFQICS-LKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDN 511
            QL EL+ S N    E+P  +         L++S   +  L     E +  L      + 
Sbjct: 177 TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 236

Query: 512 Q 512
           +
Sbjct: 237 K 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 70.6 bits (173), Expect = 3e-13
 Identities = 49/306 (16%), Positives = 97/306 (31%), Gaps = 59/306 (19%)

Query: 141 PPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFE 200
              +C  S+        + +   +P  L    N + L           L  I    F   
Sbjct: 3   HHRICHCSN-RVFLCQESKVT-EIPSDL--PRNAIELRFVLTK-----LRVIQKGAF--- 50

Query: 201 LDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPS-FGN-SMLTWLTLSGNHFTGYLPHNIC 258
                         +L+ + +  N +   I    F N   L  + +              
Sbjct: 51  ----------SGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA----------- 89

Query: 259 RGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLY-PNLTFIDLS 317
                       N+     PE+ +N  +L  + ++   +  ++ +   ++      +D+ 
Sbjct: 90  ------------NNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQ 136

Query: 318 RNNFYGEISSNW--GKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPK 375
            N     I  N   G   +   L ++ N I   I     N +QL  L+LS N+ + E+P 
Sbjct: 137 DNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPN 195

Query: 376 E-LGKLNSLTKLILRGNQLTGRLPTEI-GSLIELEYLDFSANKFNNSVPESLGNLLKLHY 433
           +     +    L +   ++   LP+    +L +L        K    +P +L  L+ L  
Sbjct: 196 DVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLK---KLP-TLEKLVALME 250

Query: 434 LGLSNN 439
             L+  
Sbjct: 251 ASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 68.7 bits (168), Expect = 1e-12
 Identities = 42/253 (16%), Positives = 84/253 (33%), Gaps = 17/253 (6%)

Query: 242 LTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNI 301
                +  T  +P ++ R              +     +      L ++ ++ N++   I
Sbjct: 14  FLCQESKVT-EIPSDLPRN--AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 70

Query: 302 -SEALGLYPNLTFIDLSRNNFYGEISSNW-GKCPKLGTLNVSMNNITGGIPREI-GNMSQ 358
            ++     P L  I + + N    I+       P L  L +S   I   +P     +  Q
Sbjct: 71  EADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH-LPDVHKIHSLQ 129

Query: 359 LQALDLSLNHIVGEIPKEL--GKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSA-N 415
              LD+  N  +  I +    G       L L  N +   +     +  +L+ L+ S  N
Sbjct: 130 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNN 188

Query: 416 KFNNSVPESLGNLLKLHYLGLSNNQFVLELPKE-LEKLVQLSELDASHNLFGGEIPFQIC 474
                  +          L +S  +    LP   LE L +L      +     ++P  + 
Sbjct: 189 NLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNL---KKLP-TLE 243

Query: 475 SLKSLEKLNLSHN 487
            L +L + +L++ 
Sbjct: 244 KLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 68.7 bits (168), Expect = 2e-12
 Identities = 52/251 (20%), Positives = 85/251 (33%), Gaps = 34/251 (13%)

Query: 53  VTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQI-GNLTKLSYISL-DSN 110
              +    T L   ++  +FS F  L  +++S N     I + +  NL KL  I +  +N
Sbjct: 32  AIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 111 QLSGKIPAEV-GLLTHLKVLSFQFNELDGSIPPEV-CQLSSIEELFLYSNHLNGSLPP-- 166
            L   I  E    L +L+ L      +   +P            L +  N    ++    
Sbjct: 91  NLL-YINPEAFQNLPNLQYLLISNTGI-KHLPDVHKIHSLQKVLLDIQDNINIHTIERNS 148

Query: 167 FLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHL 226
           F+G     V L++N N +                     +  S  N T L  L L DN+ 
Sbjct: 149 FVGLSFESVILWLNKNGIQE-------------------IHNSAFNGTQLDELNLSDNNN 189

Query: 227 SGSIPP-SF-GNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNC 284
              +P   F G S    L +S       LP       L +    S  + +  +P +L   
Sbjct: 190 LEELPNDVFHGASGPVILDISRTRIH-SLPSYGLE-NLKKLRARSTYNLK-KLP-TLEKL 245

Query: 285 TSLIRVRLNGN 295
            +L+   L   
Sbjct: 246 VALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 68.3 bits (167), Expect = 2e-12
 Identities = 35/183 (19%), Positives = 61/183 (33%), Gaps = 9/183 (4%)

Query: 337 TLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGR 396
                 + +T  IP ++        L   L  +             L K+ +  N +   
Sbjct: 13  VFLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 69

Query: 397 LPTEI-GSLIELEYLDFS-ANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQ 454
           +  ++  +L +L  +    AN      PE+  NL  L YL +SN              +Q
Sbjct: 70  IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ 129

Query: 455 LSELDASHNLFGGEIP---FQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDN 511
              LD   N+    I    F   S +    L L+ N +  +  + F G     +    +N
Sbjct: 130 KVLLDIQDNINIHTIERNSFVGLSFE-SVILWLNKNGIQEIHNSAFNGTQLDELNLSDNN 188

Query: 512 QLQ 514
            L+
Sbjct: 189 NLE 191

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 63.7 bits (155), Expect = 5e-11
 Identities = 35/208 (16%), Positives = 71/208 (34%), Gaps = 18/208 (8%)

Query: 52  RVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQI-GNLTKLSYISLDSN 110
            +  I +    +   +    FS+ P+L  + +        I  +   NL  L Y+ + + 
Sbjct: 55  DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT 114

Query: 111 QLSGKIPAEVGL-LTHLKVLSFQFNELDGSIPPEV-CQLSS-IEELFLYSNHLNGSLPPF 167
            +   +P    +      +L  Q N    +I       LS     L+L  N +   +   
Sbjct: 115 GIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNS 172

Query: 168 LGNLSNIVRLYI-NNNSLSGSILTNI-GNLKFLFELDLSFLPLSV------GNLTNLKSL 219
             N + +  L + +NN+L   +  ++         LD+S   +         NL  L++ 
Sbjct: 173 AFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR 231

Query: 220 GLMDNHLSGSIPPSFGNSMLTWLTLSGN 247
                +L   +P       L   +L+  
Sbjct: 232 ST--YNLK-KLPTLEKLVALMEASLTYP 256

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 76.6 bits (189), Expect = 2e-15
 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 5/84 (5%)

Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG 691
           IG+G  G+VY+ +   G+V AVK  +  +        + F  EV  L + RH NI+ F G
Sbjct: 32  IGSGSFGTVYKGKW-HGDV-AVKMLN--VTAPTPQQLQAFKNEVGVLRKTRHVNILLFMG 87

Query: 692 FCSHAQHSFLVYEFLERGSLAAIL 715
           + +  Q + +V ++ E  SL   L
Sbjct: 88  YSTAPQLA-IVTQWCEGSSLYHHL 110

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 75.1 bits (185), Expect = 4e-15
 Identities = 47/217 (21%), Positives = 82/217 (37%), Gaps = 21/217 (9%)

Query: 279 ESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEIS--SNWGKCPKLG 336
            S +  + +     + +N+  ++   +  + NL  + LS N     IS  S      KL 
Sbjct: 35  VSQKELSGVQNFNGDNSNIQ-SL-AGMQFFTNLKELHLSHNQ----ISDLSPLKDLTKLE 88

Query: 337 TLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGR 396
            L+V+ N +           + L  L L  N +       L  L +L  L +R N+L   
Sbjct: 89  ELSVNRNRLKN---LNGIPSACLSRLFLDNNEL--RDTDSLIHLKNLEILSIRNNKLKS- 142

Query: 397 LPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLS 456
               +G L +LE LD   N+  N     L  L K++++ L+  + V E  K   +L   +
Sbjct: 143 -IVMLGFLSKLEVLDLHGNEITN--TGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITN 199

Query: 457 ELDASHNLFGGEI-PFQICSLKSLEKLNLSHNNLSGL 492
            +    +  G  I P+ I +  S     +        
Sbjct: 200 TV---KDPDGRWISPYYISNGGSYVDGCVLWELPVYT 233

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 73.5 bits (181), Expect = 1e-14
 Identities = 37/198 (18%), Positives = 73/198 (36%), Gaps = 16/198 (8%)

Query: 316 LSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPK 375
           + R     ++             N+   ++T  +      +S +Q  +   ++I  +   
Sbjct: 3   IQRPTPINQVF-PDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNI--QSLA 57

Query: 376 ELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLG 435
            +    +L +L L  NQ++    + +  L +LE L  + N+  N    +      L  L 
Sbjct: 58  GMQFFTNLKELHLSHNQISD--LSPLKDLTKLEELSVNRNRLKNL---NGIPSACLSRLF 112

Query: 436 LSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPN 495
           L NN+  L     L  L  L  L   +N     I   +  L  LE L+L  N ++     
Sbjct: 113 LDNNE--LRDTDSLIHLKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEITNTGG- 167

Query: 496 CFEGMHGLSIIDISDNQL 513
               +  ++ ID++  + 
Sbjct: 168 -LTRLKKVNWIDLTGQKC 184

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 72.4 bits (178), Expect = 3e-14
 Identities = 40/229 (17%), Positives = 74/229 (32%), Gaps = 17/229 (7%)

Query: 292 LNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPR 351
                +   +        N    +L + +       +  +   +   N   +NI      
Sbjct: 4   QRPTPIN-QVFP-DPGLANAVKQNLGKQSV--TDLVSQKELSGVQNFNGDNSNIQSLAG- 58

Query: 352 EIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLD 411
            +   + L+ L LS N I  ++   L  L  L +L +  N+L             L  L 
Sbjct: 59  -MQFFTNLKELHLSHNQIS-DL-SPLKDLTKLEELSVNRNRLKN---LNGIPSACLSRLF 112

Query: 412 FSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPF 471
              N+  +   +SL +L  L  L + NN+  L+    L  L +L  LD   N        
Sbjct: 113 LDNNELRD--TDSLIHLKNLEILSIRNNK--LKSIVMLGFLSKLEVLDLHGNEITNTGGL 168

Query: 472 QICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNS 520
               LK +  ++L+              ++  + +   D +   P   S
Sbjct: 169 T--RLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYIS 215

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 70.1 bits (172), Expect = 2e-13
 Identities = 38/185 (20%), Positives = 74/185 (40%), Gaps = 16/185 (8%)

Query: 70  FSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVL 129
           F        V  +L       T       L+ +   + D++ +   +   +   T+LK L
Sbjct: 13  FPDPGLANAVKQNLGKQSV--TDLVSQKELSGVQNFNGDNSNIQ-SLAG-MQFFTNLKEL 68

Query: 130 SFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSIL 189
               N++   + P +  L+ +EEL +  N L  +L       + + RL+++NN L     
Sbjct: 69  HLSHNQIS-DLSP-LKDLTKLEELSVNRNRLK-NLNGI--PSACLSRLFLDNNELRD--T 121

Query: 190 TNIGNLKFLFELDLSFLPLS----VGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLS 245
            ++ +LK L  L +    L     +G L+ L+ L L  N ++ +         + W+ L+
Sbjct: 122 DSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEIT-NTGGLTRLKKVNWIDLT 180

Query: 246 GNHFT 250
           G    
Sbjct: 181 GQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 37/201 (18%), Positives = 71/201 (35%), Gaps = 22/201 (10%)

Query: 152 ELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLS-- 209
           E       +N  + P    L+N V+  +   S++   L +   L  +   +     +   
Sbjct: 1   ESIQRPTPIN-QVFP-DPGLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQSL 56

Query: 210 --VGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFI 267
             +   TNLK L L  N +S  + P    + L  L+++ N               L    
Sbjct: 57  AGMQFFTNLKELHLSHNQIS-DLSPLKDLTKLEELSVNRNRLKNLNGIPSAC---LSRLF 112

Query: 268 VSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEIS- 326
           +  N  +    +SL +  +L  + +  N L  +I   LG    L  +DL  N     I+ 
Sbjct: 113 LDNN--ELRDTDSLIHLKNLEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGNE----ITN 164

Query: 327 -SNWGKCPKLGTLNVSMNNIT 346
                +  K+  ++++     
Sbjct: 165 TGGLTRLKKVNWIDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 37/204 (18%), Positives = 72/204 (35%), Gaps = 31/204 (15%)

Query: 72  FSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGL--------- 122
              F  L  L LS N    +  S + +LTKL  +S++ N+L   +               
Sbjct: 59  MQFFTNLKELHLSHNQI--SDLSPLKDLTKLEELSVNRNRLK-NLNGIPSACLSRLFLDN 115

Query: 123 -----------LTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNL 171
                      L +L++LS + N+L  SI   +  LS +E L L+ N +  +    L  L
Sbjct: 116 NELRDTDSLIHLKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEIT-NTGG-LTRL 171

Query: 172 SNIVRLYINNN---SLSGSILTNIGNLKFLFELDLSFL-PLSVGNLTNLKSLGLMDNHLS 227
             +  + +      +        +     + + D  ++ P  + N  +     ++     
Sbjct: 172 KKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWELPV 231

Query: 228 GSIPPSFGNSMLTWLTLSGNHFTG 251
            +   S+  S    +  +   F G
Sbjct: 232 YTDEVSYKFSEYINVGETEAIFDG 255

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 76.0 bits (187), Expect = 5e-15
 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 10/89 (11%)

Query: 631 CIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
            IG G  G V+R +   GE VAVK F S    ++ +  +E   E+     +RH NI+ F 
Sbjct: 49  SIGKGRFGEVWRGKW-RGEEVAVKIFSSR---EERSWFRE--AEIYQTVMLRHENILGFI 102

Query: 691 GFCSHAQHS----FLVYEFLERGSLAAIL 715
              +    +    +LV ++ E GSL   L
Sbjct: 103 AADNKDNGTWTQLWLVSDYHEHGSLFDYL 131

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 75.9 bits (187), Expect = 6e-15
 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 10/89 (11%)

Query: 631 CIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
            IG G +G V+  +   GE VAVK F ++   ++ +  +E  TE+     +RH NI+ F 
Sbjct: 44  QIGKGRYGEVWMGKW-RGEKVAVKVFFTT---EEASWFRE--TEIYQTVLMRHENILGFI 97

Query: 691 GFCSHAQHS----FLVYEFLERGSLAAIL 715
                   S    +L+ ++ E GSL   L
Sbjct: 98  AADIKGTGSWTQLYLITDYHENGSLYDYL 126

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 75.9 bits (187), Expect = 8e-15
 Identities = 61/387 (15%), Positives = 119/387 (30%), Gaps = 70/387 (18%)

Query: 126 LKVLSFQFNELDG----SIPPEVCQLSSIEELFLYSNHLNG----SLPPFLGNLSNIVRL 177
           ++  S + + +      S+   + +  S++E+ L  N +       L   + +  ++   
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 178 YINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFG-- 235
             ++           G +K      L  L  ++     L ++ L DN    +        
Sbjct: 66  EFSDIF--------TGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDF 117

Query: 236 ---NSMLTWLTLSGNHFT--------GYLPHNICRGGL-----LEAFIVSENHFQG---- 275
              ++ L  L L  N             L              L + I   N  +     
Sbjct: 118 LSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK 177

Query: 276 TIPESLRNCTSLIRVRLNGNNLT-----GNISEALGLYPNLTFIDLSRNNFYGE----IS 326
              ++ ++   L  V++  N +        + E L     L  +DL  N F       ++
Sbjct: 178 EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA 237

Query: 327 SNWGKCPKLGTLNVSMNNITGGIPREIGNM------SQLQALDLSLNHIVGEIPKELG-- 378
                 P L  L ++   ++      + +         LQ L L  N I  +  + L   
Sbjct: 238 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTV 297

Query: 379 ---KLNSLTKLILRGNQLT--GRLPTEI---------GSLIELEYLDFSANKFNNSVPES 424
              K+  L  L L GN+ +    +  EI         G L EL+ ++   ++      E 
Sbjct: 298 IDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEELTDEEEEDEEEE 357

Query: 425 LGNLLKLHYLGLSNNQFVLELPKELEK 451
             +            +   EL  EL K
Sbjct: 358 AESQSPEPETSEEEKE-DKELADELSK 383

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 71.7 bits (176), Expect = 2e-13
 Identities = 50/337 (14%), Positives = 97/337 (28%), Gaps = 77/337 (22%)

Query: 210 VGNLTNLKSLGLMDNHLSGS-----IPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLE 264
           +   + ++   L  + ++             +  +  + LSGN                E
Sbjct: 1   MARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIG------------TE 47

Query: 265 AFIVSENHFQGTIPESLRNCTSLIRVRLNGNNL----------TGNISEALGLYPNLTFI 314
           A           + E++ +   L     +                 + +AL   P L  +
Sbjct: 48  AARW--------LSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTV 99

Query: 315 DLSRNNFYGE----ISSNWGKCPKLGTLNVSMNNIT-------------GGIPREIGNMS 357
            LS N F       +     K   L  L +  N +                + ++  N  
Sbjct: 100 RLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAP 159

Query: 358 QLQALDLSLNHI----VGEIPKELGKLNSLTKLILRGNQLTGR-LPTEIGSLIE----LE 408
            L+++    N +    + E  K       L  + +  N +    +   +   +     L+
Sbjct: 160 PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELK 219

Query: 409 YLDFSANKFNNSVPESLGNLLK----LHYLGLSNNQF----VLELPKELEKLV--QLSEL 458
            LD   N F +    +L   LK    L  LGL++          +     KL    L  L
Sbjct: 220 VLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTL 279

Query: 459 DASHNLFGGEIPFQICS-----LKSLEKLNLSHNNLS 490
              +N    +    + +     +  L  L L+ N  S
Sbjct: 280 RLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 77.1 bits (189), Expect = 8e-15
 Identities = 46/270 (17%), Positives = 78/270 (28%), Gaps = 20/270 (7%)

Query: 145 CQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLS 204
           C L +         H    +     +    V L             +    + LF  +LS
Sbjct: 302 CDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCR----DSATDEQLFRCELS 357

Query: 205 F-----LPLSVGNLTNLKSLGL-MDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNIC 258
                 L   + +   L+ L       L   I        L +   +  +F+     +  
Sbjct: 358 VEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 417

Query: 259 RGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSR 318
           R           + F             +  + L   +LT  +   L     +T +DLS 
Sbjct: 418 R---AAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VL-CHLEQLLLVTHLDLSH 472

Query: 319 NNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVG-EIPKEL 377
           N     +         L  L  S N +   +   + N+ +LQ L L  N +      + L
Sbjct: 473 NRL-RALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPL 529

Query: 378 GKLNSLTKLILRGNQLTGRLPTEIGSLIEL 407
                L  L L+GN L  +       L E+
Sbjct: 530 VSCPRLVLLNLQGNSLC-QEEGIQERLAEM 558

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 73.6 bits (180), Expect = 8e-14
 Identities = 46/293 (15%), Positives = 91/293 (31%), Gaps = 32/293 (10%)

Query: 248 HFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEA--- 304
            F+  L      G LL     +    +   P+     + +    L   +L   + +    
Sbjct: 260 CFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFR 319

Query: 305 -LGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALD 363
            +    +     +   +       +     +L    +S+   T  +  E+ +  +LQ L+
Sbjct: 320 VIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTV-LQSELESCKELQELE 378

Query: 364 LSLNHIVGEI---PKELGKLNSLTKLILRGNQLTG------------------RLPTEIG 402
                 +  I    + L  L    + +   + L                           
Sbjct: 379 PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKM 438

Query: 403 SLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASH 462
              ++  L  +      +V   L  LL + +L LS+N+    LP  L  L  L  L AS 
Sbjct: 439 EYADVRVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASD 495

Query: 463 NLFGGEIPFQICSLKSLEKLNLSHNNLSGL-IPNCFEGMHGLSIIDISDNQLQ 514
           N     +   + +L  L++L L +N L              L ++++  N L 
Sbjct: 496 NALE-NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 50.9 bits (121), Expect = 1e-06
 Identities = 21/91 (23%), Positives = 30/91 (32%), Gaps = 4/91 (4%)

Query: 71  SFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLS 130
                  + HLDLS N     +P  +  L  L  +    N L   +   V  L  L+ L 
Sbjct: 458 HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELL 514

Query: 131 FQFNELDG-SIPPEVCQLSSIEELFLYSNHL 160
              N L   +    +     +  L L  N L
Sbjct: 515 LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 72.3 bits (178), Expect = 2e-14
 Identities = 43/233 (18%), Positives = 84/233 (36%), Gaps = 24/233 (10%)

Query: 284 CTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSN-WGKCPKLGTLNVSM 342
           C      R+   ++   I     L P+   + L   +    I S+ +   P +  + VS+
Sbjct: 10  CHQEEDFRVTCKDIQ-RIP---SLPPSTQTLKLIETHL-RTIPSHAFSNLPNISRIYVSI 64

Query: 343 NNITGGIPREI-GNMSQLQALDLSLNHIVGEIPKE-LGKLNSLTKLILRGNQLTGRLP-- 398
           +     +      N+S++  +++     +  I  + L +L  L  L +    L    P  
Sbjct: 65  DVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDL 123

Query: 399 TEIGSLIELEYLDFSANKFNNSVPE----SLGNLLKLHYLGLSNNQFVLELPKELEKLVQ 454
           T++ S      L+ + N +  S+P      L N      L L NN F   +        +
Sbjct: 124 TKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNET--LTLKLYNNGFT-SVQGYAFNGTK 180

Query: 455 LSELDASHNLFGGEIP---FQICSLKS-LEKLNLSHNNLSGLIPNCFEGMHGL 503
           L  +  + N +   I    F    + S    L++S  +++ L     E +  L
Sbjct: 181 LDAVYLNKNKYLTVIDKDAFG--GVYSGPSLLDVSQTSVTALPSKGLEHLKEL 231

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 68.5 bits (168), Expect = 4e-13
 Identities = 44/217 (20%), Positives = 74/217 (34%), Gaps = 31/217 (14%)

Query: 53  VTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQI-GNLTKLSYISLDSNQ 111
              + L  T L  T+   +FS+ P +  + +S++     + S    NL+K+++I + + +
Sbjct: 33  TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 112 LSGKIPAEV-GLLTHLKVLSFQFNELDGSIPPE--VCQLSSIEELFLYSNHLNGSLPP-- 166
               I  +    L  LK L      L    P    V        L +  N    S+P   
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGL-KMFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150

Query: 167 FLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHL 226
           F G  +  + L + NN                     + +     N T L ++ L  N  
Sbjct: 151 FQGLCNETLTLKLYNNG-------------------FTSVQGYAFNGTKLDAVYLNKNKY 191

Query: 227 SGSIPP-SFGN--SMLTWLTLSGNHFTGYLPHNICRG 260
              I   +FG   S  + L +S    T  LP      
Sbjct: 192 LTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEH 227

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 31/190 (16%), Positives = 68/190 (35%), Gaps = 18/190 (9%)

Query: 332 CPKLGTLNVSMNNITG--GIPREIGNMSQLQALDLSLNHIVGEIPKE-LGKLNSLTKLIL 388
           C +     V+  +I     +P         Q L L   H+   IP      L +++++ +
Sbjct: 10  CHQEEDFRVTCKDIQRIPSLPPS------TQTLKLIETHLR-TIPSHAFSNLPNISRIYV 62

Query: 389 RGNQLTGRLPTEI-GSLIELEYLDFSANKFNNSVP-ESLGNLLKLHYLGLSNNQFVLELP 446
             +    +L +    +L ++ +++    +    +  ++L  L  L +LG+ N       P
Sbjct: 63  SIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFP 121

Query: 447 KE--LEKLVQLSELDASHNLFGGEIPFQICS--LKSLEKLNLSHNNLSGLIPNCFEGMHG 502
               +        L+ + N +   IP             L L +N  + +    F G   
Sbjct: 122 DLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTK- 180

Query: 503 LSIIDISDNQ 512
           L  + ++ N+
Sbjct: 181 LDAVYLNKNK 190

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 56.9 bits (138), Expect = 3e-09
 Identities = 37/210 (17%), Positives = 81/210 (38%), Gaps = 17/210 (8%)

Query: 202 DLSFLPLSVGNLTNLKSLGLMDNHLSGSIPP-SFGN-SMLTWLTLSGNHFTGYLPHNICR 259
           D+  +P       + ++L L++ HL  +IP  +F N   ++ + +S +     L  +   
Sbjct: 22  DIQRIP---SLPPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFY 77

Query: 260 G-GLLEAFIVSENHFQGTIP-ESLRNCTSLIRVRLNGNNLTGNISE--ALGLYPNLTFID 315
               +    +        I  ++L+    L  + +    L     +   +        ++
Sbjct: 78  NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILE 136

Query: 316 LSRNNFYGEISSN--WGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEI 373
           ++ N +   I  N   G C +  TL +  N  T  +     N ++L A+ L+ N  +  I
Sbjct: 137 ITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVI 195

Query: 374 PKEL--GKLNSLTKLILRGNQLTGRLPTEI 401
            K+   G  +  + L +    +T  LP++ 
Sbjct: 196 DKDAFGGVYSGPSLLDVSQTSVT-ALPSKG 224

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 28/156 (17%), Positives = 52/156 (33%), Gaps = 11/156 (7%)

Query: 52  RVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIP--SQIGNLTKLSYISLDS 109
           +VT+I +RNT     +   +    P L  L +   G     P  +++ +      + +  
Sbjct: 81  KVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPDLTKVYSTDIFFILEITD 139

Query: 110 NQLSGKIPAEV--GLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPP- 166
           N     IP     GL      L    N    S+       + ++ ++L  N     +   
Sbjct: 140 NPYMTSIPVNAFQGLCNETLTLKLYNNGF-TSVQGYAFNGTKLDAVYLNKNKYLTVIDKD 198

Query: 167 -FLGNLSNIVRLYINNN---SLSGSILTNIGNLKFL 198
            F G  S    L ++     +L    L ++  L   
Sbjct: 199 AFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIAR 234

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 18/148 (12%), Positives = 46/148 (31%), Gaps = 29/148 (19%)

Query: 381 NSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQ 440
           +      +    +  R+P         + L             +  NL  +  + +S + 
Sbjct: 11  HQEEDFRVTCKDIQ-RIP---SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSID- 65

Query: 441 FVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNN-LSGLIPNCFEG 499
                       V L +L++  + F          L  +  + + +   L+ + P+  + 
Sbjct: 66  ------------VTLQQLES--HSFYN--------LSKVTHIEIRNTRNLTYIDPDALKE 103

Query: 500 MHGLSIIDISDNQLQGPVPNSTAFRNAP 527
           +  L  + I +  L+   P+ T   +  
Sbjct: 104 LPLLKFLGIFNTGLKM-FPDLTKVYSTD 130

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 72.3 bits (178), Expect = 4e-14
 Identities = 56/180 (31%), Positives = 79/180 (43%), Gaps = 19/180 (10%)

Query: 81  LDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEV-GLLTHLKVLSFQFNELDGS 139
           LDL  N            LTKL  + L+ N+L   +PA +   L +L+ L    N+L  +
Sbjct: 42  LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-A 99

Query: 140 IPPEV-CQLSSIEELFLYSNHLNGSLPP--FLGNLSNIVRLYINNN---SLSGSILTNIG 193
           +P  V  QL ++ EL L  N L  SLPP  F  +L+ +  L +  N   SL   +   + 
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLK-SLPPRVF-DSLTKLTYLSLGYNELQSLPKGVFDKLT 157

Query: 194 NLKFLFELD---LSFLPLSV-GNLTNLKSLGLMDNHLSGSIPPSF--GNSMLTWLTLSGN 247
           +LK L  L    L  +P      LT LK+L L +N L   +P         L  L L  N
Sbjct: 158 SLKELR-LYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 71.5 bits (176), Expect = 6e-14
 Identities = 48/178 (26%), Positives = 75/178 (42%), Gaps = 28/178 (15%)

Query: 348 GIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEI-GSLIE 406
            IP      +  + LDL  N +     K   +L  L  L L  N+L   LP  I   L  
Sbjct: 34  NIP------ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKN 86

Query: 407 LEYLDFSANKFNNSVPESL-GNLLKLHYLGLSNNQFVLELPKEL-EKLVQLSELDASHNL 464
           LE L  + NK   ++P  +   L+ L  L L  NQ    LP  + + L +L+ L   +N 
Sbjct: 87  LETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYN- 143

Query: 465 FGGEIPFQICS--------LKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQ 514
                  ++ S        L SL++L L +N L  +    F+ +  L  + + +NQL+
Sbjct: 144 -------ELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 70.4 bits (173), Expect = 2e-13
 Identities = 46/179 (25%), Positives = 83/179 (46%), Gaps = 10/179 (5%)

Query: 338 LNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKEL-GKLNSLTKLILRGNQLTGR 396
           L++  N ++    +    +++L+ L L+ N +   +P  +  +L +L  L +  N+L   
Sbjct: 42  LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-A 99

Query: 397 LPTEI-GSLIELEYLDFSANKFNNSVPESL-GNLLKLHYLGLSNNQFVLELPKEL-EKLV 453
           LP  +   L+ L  L    N+   S+P  +  +L KL YL L  N+    LPK + +KL 
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLT 157

Query: 454 QLSELDASHNLFGGEIPFQIC-SLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDN 511
            L EL   +N     +P      L  L+ L L +N L  +    F+ +  L ++ + +N
Sbjct: 158 SLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 66.5 bits (163), Expect = 3e-12
 Identities = 60/236 (25%), Positives = 88/236 (37%), Gaps = 57/236 (24%)

Query: 91  TIPSQI-GNLTKLSYISLDSNQLSGKIPAEV-GLLTHLKVLSFQFNELDGSIPPEVC-QL 147
            IPS I  +  KL    L SN+LS  +P++    LT L++L    N+L  ++P  +  +L
Sbjct: 30  AIPSNIPADTKKLD---LQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKEL 84

Query: 148 SSIEELFLYSNHLNGSLPP-FLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFL 206
            ++E L++  N L  +LP      L N+  L ++ N L                     L
Sbjct: 85  KNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-------------------SL 124

Query: 207 PLSV-GNLTNLKSLGLMDNHLSGSIPP-SFGN-SMLTWLTLSGNHFTGYLPHNICRGGLL 263
           P  V  +LT L  L L  N L  S+P   F   + L  L L  N     +P         
Sbjct: 125 PPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKR-VPEG------- 175

Query: 264 EAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRN 319
            AF                  T L  ++L+ N L      A      L  + L  N
Sbjct: 176 -AF---------------DKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 50.7 bits (122), Expect = 5e-07
 Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 6/114 (5%)

Query: 72  FSSFPQLVHLDLSLNGFFGTIPSQI-GNLTKLSYISLDSNQLSGKIPAEV-GLLTHLKVL 129
           F     L  L L  N    ++P ++  +LTKL+Y+SL  N+L   +P  V   LT LK L
Sbjct: 105 FDQLVNLAELRLDRNQL-KSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKEL 162

Query: 130 SFQFNELDGSIPPEVC-QLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNN 182
               N+L   +P     +L+ ++ L L +N L         +L  +  L +  N
Sbjct: 163 RLYNNQL-KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 71.2 bits (175), Expect = 1e-13
 Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 5/86 (5%)

Query: 631 CIGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKF 689
            +G G +G VY   +L +   +A+K+    IP       +    E+     ++H+NIV++
Sbjct: 29  VLGKGTYGIVYAGRDLSNQVRIAIKE----IPERDSRYSQPLHEEIALHKHLKHKNIVQY 84

Query: 690 YGFCSHAQHSFLVYEFLERGSLAAIL 715
            G  S      +  E +  GSL+A+L
Sbjct: 85  LGSFSENGFIKIFMEQVPGGSLSALL 110

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 71.6 bits (176), Expect = 1e-13
 Identities = 31/134 (23%), Positives = 55/134 (41%), Gaps = 8/134 (5%)

Query: 587 QKSDSGDRQSSNQNPQGLFSILNFEGKLVYDEIVRETN---DFDAEYCIGNGGHGSVYRA 643
               SG    +         + + + K     +V + +     D+   IG G  G V  A
Sbjct: 5   HHHSSGVDLGTENLYFQSGVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLA 64

Query: 644 -ELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV 702
            E  SG  VAVK     +   +   ++    EV  + + +H N+V+ Y      +  +++
Sbjct: 65  REKHSGRQVAVKM----MDLRKQQRRELLFNEVVIMRDYQHFNVVEMYKSYLVGEELWVL 120

Query: 703 YEFLERGSLAAILS 716
            EFL+ G+L  I+S
Sbjct: 121 MEFLQGGALTDIVS 134

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 70.4 bits (173), Expect = 3e-13
 Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 8/104 (7%)

Query: 616 YDEIVRETN---DFDAEYCIGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEF 671
           Y+ + R+ +    ++    +G+G  G VY+A    +G + A K     I      + +++
Sbjct: 8   YEHVRRDLDPNEVWEIVGELGDGAFGKVYKAKNKETGALAAAKV----IETKSEEELEDY 63

Query: 672 LTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
           + E++ L    H  IVK  G   H    +++ EF   G++ AI+
Sbjct: 64  IVEIEILATCDHPYIVKLLGAYYHDGKLWIMIEFCPGGAVDAIM 107

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 71.1 bits (175), Expect = 3e-13
 Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 6/95 (6%)

Query: 618 EIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV-VAVKKFHSSIPCDQIADQKEFLTEVQ 676
            +  E  D      IG G  G V+   L +    VAVK    ++P D      +FL E +
Sbjct: 110 VLNHE--DLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLK---AKFLQEAR 164

Query: 677 ALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
            L +  H NIV+  G C+  Q  ++V E ++ G  
Sbjct: 165 ILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDF 199

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 70.0 bits (172), Expect = 3e-13
 Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 6/93 (6%)

Query: 625 DFDAEYCIGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLT-EVQALTEIR 682
            F     IG G  G V++  +  + +VVA+K     I  ++  D+ E +  E+  L++  
Sbjct: 23  LFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKI----IDLEEAEDEIEDIQQEITVLSQCD 78

Query: 683 HRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
              + K+YG        +++ E+L  GS   +L
Sbjct: 79  SPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLL 111

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 69.7 bits (171), Expect = 4e-13
 Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 6/94 (6%)

Query: 624 NDFDAEYCIGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFL-TEVQALTEI 681
           +D++ +  IG+G    V  A   P  E VA+K+    I  ++     + L  E+QA+++ 
Sbjct: 15  DDYELQEVIGSGATAVVQAAYCAPKKEKVAIKR----INLEKCQTSMDELLKEIQAMSQC 70

Query: 682 RHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
            H NIV +Y         +LV + L  GS+  I+
Sbjct: 71  HHPNIVSYYTSFVVKDELWLVMKLLSGGSVLDII 104

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 68.9 bits (169), Expect = 9e-13
 Identities = 30/126 (23%), Positives = 50/126 (39%), Gaps = 16/126 (12%)

Query: 594 RQSSNQNPQGLFSILNFEGKLVYDEIVRETNDFDAEYCIGNGGHGSVYRAEL------PS 647
               + NP   F+        +  E+ R+         +G+G  G VY  ++      PS
Sbjct: 3   HHHHHHNPNYCFAGKTSSISDLK-EVPRKNITLIRG--LGHGAFGEVYEGQVSGMPNDPS 59

Query: 648 GEVVAVK--KFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEF 705
              VAVK      S       D+ +FL E   +++  H+NIV+  G    +   F++ E 
Sbjct: 60  PLQVAVKTLPEVCSE-----QDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRFILMEL 114

Query: 706 LERGSL 711
           +  G L
Sbjct: 115 MAGGDL 120

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 68.2 bits (167), Expect = 2e-12
 Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 10/96 (10%)

Query: 621 RETNDFDAEYCIGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALT 679
            E +    +  +G G  G V+R  +  +G   AVKK    +  +    +     E+ A  
Sbjct: 55  EEVHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKK----VRLEVFRVE-----ELVACA 105

Query: 680 EIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
            +    IV  YG         +  E LE GSL  ++
Sbjct: 106 GLSSPRIVPLYGAVREGPWVNIFMELLEGGSLGQLI 141

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 66.8 bits (164), Expect = 2e-12
 Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 7/94 (7%)

Query: 618 EIVRETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQA 677
            I     +      IG+G  G V+     + + VA+K             +++F+ E + 
Sbjct: 4   VIDPS--ELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM-----SEEDFIEEAEV 56

Query: 678 LTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
           + ++ H  +V+ YG C       LV EF+E G L
Sbjct: 57  MMKLSHPKLVQLYGVCLEQAPICLVTEFMEHGCL 90

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 68.2 bits (167), Expect = 2e-12
 Identities = 51/284 (17%), Positives = 98/284 (34%), Gaps = 46/284 (16%)

Query: 277 IPESLRNCTSLIRVRLNGNNLTGN----ISEALGLYP-NLTFIDLSRNNFYGE----ISS 327
           + E       +  + L+ NNL       + +A    P ++T ++LS N+   +    +  
Sbjct: 14  VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQ 73

Query: 328 NWGKCP-KLGTLNVSMNNITGGIPREIGNM-----SQLQALDLSLNHI----VGEIPKEL 377
                P  + +LN+S N ++     E+          +  LDL  N        E  +  
Sbjct: 74  ILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAF 133

Query: 378 GKLN-SLTKLILRGNQLTGRLPTEIGSLIE-----LEYLDFSANKFNNSVPESLGNLLK- 430
             L  S+T L LRGN L  +   E+  ++      +  L+   N   +     L   L  
Sbjct: 134 SNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLAS 193

Query: 431 ----LHYLGLSNNQF----VLELPKELEKL-VQLSELDASHNLFGGEIPFQICSL----K 477
               +  L LS N        EL      +   +  L+   N   G     +  L    K
Sbjct: 194 IPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLK 253

Query: 478 SLEKLNLSHNNLSGLIPNC-------FEGMHGLSIIDISDNQLQ 514
            L+ + L ++ +  +           F  +  + ++D +  ++ 
Sbjct: 254 HLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 60.5 bits (147), Expect = 7e-10
 Identities = 51/310 (16%), Positives = 100/310 (32%), Gaps = 58/310 (18%)

Query: 212 NLTNLKSLGLMDNHLSGSIPPSFG------NSMLTWLTLSGNHFT--------GYLPHNI 257
              ++ SL L  N L                + +T L LSGN  +          L    
Sbjct: 49  TPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIP 108

Query: 258 CRGGLLEAFIVSENHFQGT----IPESLRNC-TSLIRVRLNGNNLTGN----ISEALGLY 308
                +    +  N F         ++  N   S+  + L GN+L       + + L   
Sbjct: 109 FT---ITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAI 165

Query: 309 P-NLTFIDLSRNNFYGE----ISSNWGKCPK-LGTLNVSMNNITGGIPREIG-----NMS 357
           P N+  ++L  NN   +    ++      P  + +L++S N +      E+        +
Sbjct: 166 PANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPN 225

Query: 358 QLQALDLSLNHIVGEIPKELGKL----NSLTKLILRGNQLTGRLPTEIGSLIE------- 406
            + +L+L LN + G   + L  L      L  + L  + +      +  +L         
Sbjct: 226 HVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQK 285

Query: 407 LEYLDFSANKFNNSVPESLGNLLK-----LHYLGLSNN-----QFVLELPKELEKLVQLS 456
           +  +D +  + + S    + NL++          L N      Q      ++L    +L 
Sbjct: 286 IILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELR 345

Query: 457 ELDASHNLFG 466
           E   +     
Sbjct: 346 ESIQTCKPLL 355

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 50.9 bits (122), Expect = 7e-07
 Identities = 50/351 (14%), Positives = 92/351 (26%), Gaps = 77/351 (21%)

Query: 124 THLKVLSFQFNELDGSIPPEVCQL-----SSIEELFLYSNHLN----GSLPPFL-GNLSN 173
             +  L    N L      E+ Q      +S+  L L  N L       L   L    +N
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81

Query: 174 IVRLYINNNSLSGSILTNIGNL-----KFLFELDLSFLPLS-----------VGNLTNLK 217
           +  L ++ N LS      +          +  LDL +   S                ++ 
Sbjct: 82  VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT 141

Query: 218 SLGLMDNHLSGSIPPSFG------NSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSEN 271
           SL L  N L                + +  L L GN+       +     L +       
Sbjct: 142 SLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA-----SKNCAELAKFLA---- 192

Query: 272 HFQGTIPESLRNCTSLIRVRLNGNNLTGN----ISEALGLYPN-LTFIDLSRNNFYGE-- 324
                         S+  + L+ N L       ++      PN +  ++L  N  +G   
Sbjct: 193 ----------SIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242

Query: 325 --ISSNWGKCPKLGTLNVSMNNITG-------GIPREIGNMSQLQALDLSLNHIVGEIPK 375
             +         L T+ +  + +          +     N+ ++  +D +   I      
Sbjct: 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSI 302

Query: 376 ELGKL-----NSLTKLILRGNQLT-----GRLPTEIGSLIELEYLDFSANK 416
            +  L            L    L           ++    EL     +   
Sbjct: 303 PISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKP 353

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 67.3 bits (165), Expect = 3e-12
 Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 11/87 (12%)

Query: 632 IGNGGHGSVYRAELP-----SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNI 686
           +G G  GSV           +GEVVAVKK   S         ++F  E++ L  ++H NI
Sbjct: 18  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTE----EHLRDFEREIEILKSLQHDNI 73

Query: 687 VKFYGFCSHAQHS--FLVYEFLERGSL 711
           VK+ G C  A      L+ E+L  GSL
Sbjct: 74  VKYKGVCYSAGRRNLKLIMEYLPYGSL 100

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 67.0 bits (164), Expect = 3e-12
 Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 4/98 (4%)

Query: 621 RETNDFDAEYCIGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALT 679
           R T +F     IG+G  GSV++  +   G + A+K+  S  P     D++  L EV A  
Sbjct: 8   RYTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKR--SKKPLAGSVDEQNALREVYAHA 65

Query: 680 EI-RHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAILS 716
            + +H ++V+++   +   H  +  E+   GSLA  +S
Sbjct: 66  VLGQHSHVVRYFSAWAEDDHMLIQNEYCNGGSLADAIS 103

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 66.9 bits (164), Expect = 3e-12
 Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 8/103 (7%)

Query: 618 EIVRETN---DFDAEYCIGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLT 673
            IV   +    +     IG G  G+VY A ++ +G+ VA+++    +   Q   ++  + 
Sbjct: 11  SIVSVGDPKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQ----MNLQQQPKKELIIN 66

Query: 674 EVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAILS 716
           E+  + E ++ NIV +          ++V E+L  GSL  +++
Sbjct: 67  EILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVT 109

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 67.0 bits (164), Expect = 4e-12
 Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 11/87 (12%)

Query: 632 IGNGGHGSVYRAELP-----SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNI 686
           +G G  GSV           +GEVVAVKK   S         ++F  E++ L  ++H NI
Sbjct: 49  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTE----EHLRDFEREIEILKSLQHDNI 104

Query: 687 VKFYGFCSHAQHS--FLVYEFLERGSL 711
           VK+ G C  A      L+ E+L  GSL
Sbjct: 105 VKYKGVCYSAGRRNLKLIMEYLPYGSL 131

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 67.0 bits (164), Expect = 4e-12
 Identities = 29/131 (22%), Positives = 60/131 (45%), Gaps = 28/131 (21%)

Query: 586 KQKSDSGDRQSSNQNPQGLFSILNFEGKLVYDEIVRETNDFDAEYCIGNGGHGSVYRA-E 644
           +++    D  S  + P+ +F +L                       +G G +GSVY+A  
Sbjct: 12  RRQLKKLDEDSLTKQPEEVFDVLE---------------------KLGEGSYGSVYKAIH 50

Query: 645 LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYE 704
             +G++VA+K+    +P +   D +E + E+  + +    ++VK+YG        ++V E
Sbjct: 51  KETGQIVAIKQ----VPVES--DLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVME 104

Query: 705 FLERGSLAAIL 715
           +   GS++ I+
Sbjct: 105 YCGAGSVSDII 115

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 67.6 bits (165), Expect = 4e-12
 Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 9/99 (9%)

Query: 622 ETNDFDAEYCIGNGGH--GSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQ--KEFLTEVQ 676
           E   ++    IG G     +V  A   P+GE V V++    I  +  +++       E+ 
Sbjct: 23  EGGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRR----INLEACSNEMVTFLQGELH 78

Query: 677 ALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
                 H NIV +          ++V  F+  GS   ++
Sbjct: 79  VSKLFNHPNIVPYRATFIADNELWVVTSFMAYGSAKDLI 117

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 66.1 bits (162), Expect = 5e-12
 Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 9/100 (9%)

Query: 614 LVYD--EIVRETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEF 671
           L Y   EI  +  D      +G G  G V   +      VA+K             + EF
Sbjct: 14  LGYGSWEIDPK--DLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM-----SEDEF 66

Query: 672 LTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
           + E + +  + H  +V+ YG C+  +  F++ E++  G L
Sbjct: 67  IEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCL 106

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 66.5 bits (163), Expect = 5e-12
 Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 18/110 (16%)

Query: 613 KLVYD---EIVRETNDFDAEYCIGNGGHGSVYRAELPSGE------VVAVK--KFHSSIP 661
           K++ D   E  R+         +G G  G V +A     +       VAVK  K ++S  
Sbjct: 11  KILEDPKWEFPRKNLVLGKT--LGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASP- 67

Query: 662 CDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
               ++ ++ L+E   L ++ H +++K YG CS      L+ E+ + GSL
Sbjct: 68  ----SELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSL 113

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 67.0 bits (164), Expect = 5e-12
 Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 16/123 (13%)

Query: 597 SNQNPQGLFSILNFEGKLVYDEIVRETNDFDAEYCIGNGGHGSVYRAEL------PSGEV 650
           ++ NP   F+        +  E+ R+         +G+G  G VY  ++      PS   
Sbjct: 47  TDYNPNYCFAGKTSSISDLK-EVPRKNITLIRG--LGHGAFGEVYEGQVSGMPNDPSPLQ 103

Query: 651 VAVK--KFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLER 708
           VAVK      S       D+ +FL E   +++  H+NIV+  G    +   F++ E +  
Sbjct: 104 VAVKTLPEVCSE-----QDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRFILLELMAG 158

Query: 709 GSL 711
           G L
Sbjct: 159 GDL 161

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 67.5 bits (165), Expect = 6e-12
 Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 8/95 (8%)

Query: 618 EIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV-VAVKKFHSSIPCDQIADQKEFLTEVQ 676
           E+ R   D   ++ +G G +G VY        + VAVK            + +EFL E  
Sbjct: 216 EMERT--DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-----EVEEFLKEAA 268

Query: 677 ALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
            + EI+H N+V+  G C+     +++ EF+  G+L
Sbjct: 269 VMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNL 303

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 66.2 bits (162), Expect = 6e-12
 Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 11/87 (12%)

Query: 632 IGNGGHGSVYRAELP-----SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNI 686
           +G G  GSV           +G +VAVK+   S P      Q++F  E+Q L  +    I
Sbjct: 31  LGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGP----DQQRDFQREIQILKALHSDFI 86

Query: 687 VKFYGFCSHAQHS--FLVYEFLERGSL 711
           VK+ G           LV E+L  G L
Sbjct: 87  VKYRGVSYGPGRQSLRLVMEYLPSGCL 113

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 65.8 bits (161), Expect = 7e-12
 Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 10/87 (11%)

Query: 632 IGNGGHGSVYRAELP-----SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNI 686
           +G G  G V           +GE VAVK      P        +   E++ L  + H NI
Sbjct: 29  LGEGHFGKVELCRYDPEGDNTGEQVAVKSLK---PESGGNHIADLKKEIEILRNLYHENI 85

Query: 687 VKFYGFCSHAQHS--FLVYEFLERGSL 711
           VK+ G C+    +   L+ EFL  GSL
Sbjct: 86  VKYKGICTEDGGNGIKLIMEFLPSGSL 112

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A Length = 286

 Score = 65.5 bits (160), Expect = 9e-12
 Identities = 14/88 (15%), Positives = 26/88 (29%), Gaps = 6/88 (6%)

Query: 631 CIGNGGHGSVYRAE---LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIV 687
             G       ++A    L     VA+               +E L+    L+ I    + 
Sbjct: 38  FHGGVPPLQFWQALDTAL--DRQVALTFVDPQGVLPD-DVLQETLSRTLRLSRIDKPGVA 94

Query: 688 KFYGFCSHAQHSFLVYEFLERGSLAAIL 715
           +            +V E++  GSL  + 
Sbjct: 95  RVLDVVHTRAGGLVVAEWIRGGSLQEVA 122

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 64.9 bits (159), Expect = 1e-11
 Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 7/94 (7%)

Query: 618 EIVRETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQA 677
           E+ RE  +      +G+G  G V   +      VAVK             + EF  E Q 
Sbjct: 4   ELKRE--EITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSM-----SEDEFFQEAQT 56

Query: 678 LTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
           + ++ H  +VKFYG CS     ++V E++  G L
Sbjct: 57  MMKLSHPKLVKFYGVCSKEYPIYIVTEYISNGCL 90

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 65.3 bits (160), Expect = 1e-11
 Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 8/95 (8%)

Query: 618 EIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV-VAVKKFHSSIPCDQIADQKEFLTEVQ 676
           E+ R   D   ++ +G G +G VY        + VAVK            + +EFL E  
Sbjct: 9   EMERT--DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-----EVEEFLKEAA 61

Query: 677 ALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
            + EI+H N+V+  G C+     +++ EF+  G+L
Sbjct: 62  VMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNL 96

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 62.8 bits (153), Expect = 1e-11
 Identities = 34/146 (23%), Positives = 50/146 (34%), Gaps = 15/146 (10%)

Query: 279 ESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISS--NWGKCPKLG 336
               N      + L G  +   I            ID S N    EI     +    +L 
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDN----EIRKLDGFPLLRRLK 67

Query: 337 TLNVSMNNITGGIPREIGNMSQLQALDLSLNHI--VGEIPKELGKLNSLTKLILRGNQLT 394
           TL V+ N I          +  L  L L+ N +  +G++   L  L SLT L +  N +T
Sbjct: 68  TLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLASLKSLTYLCILRNPVT 126

Query: 395 GRLP----TEIGSLIELEYLDFSANK 416
                     I  + ++  LDF   K
Sbjct: 127 -NKKHYRLYVIYKVPQVRVLDFQKVK 151

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 52.0 bits (125), Expect = 7e-08
 Identities = 30/152 (19%), Positives = 55/152 (36%), Gaps = 17/152 (11%)

Query: 331 KCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRG 390
              +   L++    I   I      + Q  A+D S N I  ++      L  L  L++  
Sbjct: 17  NAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIR-KLDG-FPLLRRLKTLLVNN 73

Query: 391 NQLTGRLPTEIGSLIELEYLDFSANKFNN-SVPESLGNLLKLHYLGLSNN---------Q 440
           N++         +L +L  L  + N        + L +L  L YL +  N          
Sbjct: 74  NRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRL 133

Query: 441 FVLELPKELEKL----VQLSELDASHNLFGGE 468
           +V+    ++  L    V+L E   +  +F G+
Sbjct: 134 YVIYKVPQVRVLDFQKVKLKERQEAEKMFKGK 165

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 49.3 bits (118), Expect = 6e-07
 Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 20/131 (15%)

Query: 94  SQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEEL 153
           +Q  N  +   + L   ++   I      L     + F  NE+   +      L  ++ L
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLDG-FPLLRRLKTL 69

Query: 154 FLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNL 213
            + +N +          L ++  L + NNSL       +G+L  L             +L
Sbjct: 70  LVNNNRICRIGEGLDQALPDLTELILTNNSLV-----ELGDLDPLA------------SL 112

Query: 214 TNLKSLGLMDN 224
            +L  L ++ N
Sbjct: 113 KSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 19/108 (17%), Positives = 43/108 (39%), Gaps = 11/108 (10%)

Query: 410 LDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKEL-EKLVQLSELDASHNLFGGE 468
           +  +A     +      N ++   L L   +  + + + L   L Q   +D S N    E
Sbjct: 2   VKLTAELIEQA--AQYTNAVRDRELDLRGYK--IPVIENLGATLDQFDAIDFSDN----E 53

Query: 469 IPF--QICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQ 514
           I        L+ L+ L +++N +  +     + +  L+ + +++N L 
Sbjct: 54  IRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 25/151 (16%), Positives = 50/151 (33%), Gaps = 30/151 (19%)

Query: 362 LDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSV 421
           + L+   I  +   +        +L LRG ++             +E L           
Sbjct: 2   VKLTAELI-EQAA-QYTNAVRDRELDLRGYKIP-----------VIENLG---------- 38

Query: 422 PESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEK 481
                 L +   +  S+N+  +        L +L  L  ++N           +L  L +
Sbjct: 39  ----ATLDQFDAIDFSDNE--IRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92

Query: 482 LNLSHNNLSGL-IPNCFEGMHGLSIIDISDN 511
           L L++N+L  L   +    +  L+ + I  N
Sbjct: 93  LILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 65.4 bits (160), Expect = 1e-11
 Identities = 34/131 (25%), Positives = 52/131 (39%), Gaps = 15/131 (11%)

Query: 589 SDSGDRQSSNQNPQGLFSILNFEGKLVYDEIVRETNDFDAEYCIGNGGHGSVYRAELPSG 648
                    + NP      L    KL+  E  R   ++  +  IG G  G V++A  P  
Sbjct: 14  PSELLLDRLHPNPMYQRMPLLLNPKLLSLEYPRNNIEYVRD--IGEGAFGRVFQARAPGL 71

Query: 649 E------VVAVK--KFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSF 700
                  +VAVK  K  +S        Q +F  E   + E  + NIVK  G C+  +   
Sbjct: 72  LPYEPFTMVAVKMLKEEASAD-----MQADFQREAALMAEFDNPNIVKLLGVCAVGKPMC 126

Query: 701 LVYEFLERGSL 711
           L++E++  G L
Sbjct: 127 LLFEYMAYGDL 137

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 64.6 bits (158), Expect = 2e-11
 Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 8/96 (8%)

Query: 624 NDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKE---FLTEVQALT 679
            +F  E  IG G    VYRA  L  G  VA+KK    +    + D K     + E+  L 
Sbjct: 32  ANFRIEKKIGRGQFSEVYRAACLLDGVPVALKK----VQIFDLMDAKARADCIKEIDLLK 87

Query: 680 EIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
           ++ H N++K+Y          +V E  + G L+ ++
Sbjct: 88  QLNHPNVIKYYASFIEDNELNIVLELADAGDLSRMI 123

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 65.0 bits (159), Expect = 2e-11
 Identities = 31/143 (21%), Positives = 55/143 (38%), Gaps = 19/143 (13%)

Query: 581 IFILRKQKSDSGDRQSSNQNPQGLFSILNFEGKLVYD---EIVRETNDFDAEYCIGNGGH 637
           +    KQK     R    ++ +G         +L Y+   E  R    F     +G G  
Sbjct: 2   VDYKYKQKPKYQVRWKIIESYEGNSYTFIDPTQLPYNEKWEFPRNNLQFGKT--LGAGAF 59

Query: 638 GSVYRAEL------PSGEVVAVK--KFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVK 688
           G V  A         +   VAVK  K  +        +++  ++E++ ++ + +H NIV 
Sbjct: 60  GKVVEATAFGLGKEDAVLKVAVKMLKSTAHA-----DEKEALMSELKIMSHLGQHENIVN 114

Query: 689 FYGFCSHAQHSFLVYEFLERGSL 711
             G C+H     ++ E+   G L
Sbjct: 115 LLGACTHGGPVLVITEYCCYGDL 137

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 63.6 bits (155), Expect = 2e-11
 Identities = 55/176 (31%), Positives = 78/176 (44%), Gaps = 31/176 (17%)

Query: 81  LDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEV-GLLTHLKVLSFQFNELDGS 139
           LDL   G      +    LTKL++++LD NQL   + A V   LT L  L    N+L  S
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA-S 97

Query: 140 IPPEV-CQLSSIEELFLYSNHLNGSLPP--FLGNLSNIVRLYINNNSLSGSILTNIGNLK 196
           +P  V   L+ +++L+L  N L  SLP   F   L+ +  L +N N L            
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQLK-SLPSGVF-DRLTKLKELRLNTNQLQS---------- 145

Query: 197 FLFELDLSFLPLSV-GNLTNLKSLGLMDNHLSGSIPPSFGNSM--LTWLTLSGNHF 249
                    +P      LTNL++L L  N L  S+P    + +  L  +TL GN F
Sbjct: 146 ---------IPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQF 191

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 60.5 bits (147), Expect = 3e-10
 Identities = 49/176 (27%), Positives = 72/176 (40%), Gaps = 28/176 (15%)

Query: 348 GIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEI-GSLIE 406
           GIP +       + LDL    +          L  LT L L  NQL   L   +   L E
Sbjct: 32  GIPADT------EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTE 84

Query: 407 LEYLDFSANKFNNSVPESL-GNLLKLHYLGLSNNQFVLELPKEL-EKLVQLSELDASHNL 464
           L  L  + N+   S+P  +  +L +L  L L  NQ    LP  + ++L +L EL  + N 
Sbjct: 85  LGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTN- 141

Query: 465 FGGEIPFQICS--------LKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQ 512
                  Q+ S        L +L+ L+LS N L  +    F+ +  L  I +  NQ
Sbjct: 142 -------QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 53.9 bits (130), Expect = 4e-08
 Identities = 38/154 (24%), Positives = 57/154 (37%), Gaps = 7/154 (4%)

Query: 338 LNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRL 397
           L++    +          +++L  L+L  N +          L  L  L L  NQL   L
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SL 98

Query: 398 PTEI-GSLIELEYLDFSANKFNNSVPESL-GNLLKLHYLGLSNNQFVLELPKEL-EKLVQ 454
           P  +   L +L+ L    N+   S+P  +   L KL  L L+ NQ    +P    +KL  
Sbjct: 99  PLGVFDHLTQLDKLYLGGNQL-KSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTN 156

Query: 455 LSELDASHNLFGGEIPFQICSLKSLEKLNLSHNN 488
           L  L  S N            L  L+ + L   N
Sbjct: 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITL-FGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 43.9 bits (104), Expect = 7e-05
 Identities = 33/132 (25%), Positives = 50/132 (37%), Gaps = 26/132 (19%)

Query: 384 TKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLL-KLHYLGLSNNQFV 442
            KL L+   L          L +L +L+   N+   ++   + + L +L  LGL+NNQ  
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQL- 95

Query: 443 LELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHG 502
                 L   V                 F    L  L+KL L  N L  L    F+ +  
Sbjct: 96  ----ASLPLGV-----------------FD--HLTQLDKLYLGGNQLKSLPSGVFDRLTK 132

Query: 503 LSIIDISDNQLQ 514
           L  + ++ NQLQ
Sbjct: 133 LKELRLNTNQLQ 144

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 43.9 bits (104), Expect = 8e-05
 Identities = 42/155 (27%), Positives = 58/155 (37%), Gaps = 13/155 (8%)

Query: 151 EELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSG------SILTNIGNLKFLFELDLS 204
           E+L L S  L          L+ +  L ++ N L          LT +G L  L    L+
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTL-GLANNQLA 96

Query: 205 FLPLSV-GNLTNLKSLGLMDNHLSGSIPPS-FGN-SMLTWLTLSGNHFTGYLPHNICRG- 260
            LPL V  +LT L  L L  N L  S+P   F   + L  L L+ N     +P       
Sbjct: 97  SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQS-IPAGAFDKL 154

Query: 261 GLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGN 295
             L+   +S N  Q     +      L  + L GN
Sbjct: 155 TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 64.6 bits (158), Expect = 3e-11
 Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 15/102 (14%)

Query: 618 EIVRETNDFDAEYCIGNGGHGSVYRAELPSGE------VVAVK--KFHSSIPCDQIADQK 669
           E+ RE      E  +G G  G VY               VA+K     +S+      ++ 
Sbjct: 21  EVAREKITMSRE--LGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASM-----RERI 73

Query: 670 EFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
           EFL E   + E    ++V+  G  S  Q + ++ E + RG L
Sbjct: 74  EFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDL 115

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 64.2 bits (157), Expect = 3e-11
 Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 16/102 (15%)

Query: 618 EIVRETNDFDAEYCIGNGGHGSVYRAELPSGE------VVAVK--KFHSSIPCDQIADQK 669
            I R       E  +G G  G V+ AE  +        +VAVK  K  S       + ++
Sbjct: 37  HIKRRDIVLKWE--LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASE------SARQ 88

Query: 670 EFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
           +F  E + LT ++H++IV+F+G C+  +   +V+E++  G L
Sbjct: 89  DFQREAELLTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDL 130

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 63.8 bits (156), Expect = 4e-11
 Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 12/100 (12%)

Query: 618 EIVRETNDFDAEYCIGNGGHGSVYRAELPSGE------VVAVKKFHSSIPCDQIADQKEF 671
            I R       E  +G G  G V+ AE  +        +VAVK    ++    +A +K+F
Sbjct: 11  HIKRRDIVLKRE--LGEGAFGKVFLAECYNLSPTKDKMLVAVK----ALKDPTLAARKDF 64

Query: 672 LTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
             E + LT ++H +IVKFYG C       +V+E+++ G L
Sbjct: 65  QREAELLTNLQHEHIVKFYGVCGDGDPLIMVFEYMKHGDL 104

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 63.4 bits (155), Expect = 4e-11
 Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 10/95 (10%)

Query: 618 EIVRETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQA 677
            +  +         IG G  G V   +   G  VAVK   +       A  + FL E   
Sbjct: 17  ALNMKELKLLQT--IGKGEFGDVMLGDY-RGNKVAVKCIKND------ATAQAFLAEASV 67

Query: 678 LTEIRHRNIVKFYGFCSHAQHS-FLVYEFLERGSL 711
           +T++RH N+V+  G     +   ++V E++ +GSL
Sbjct: 68  MTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSL 102

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 63.8 bits (156), Expect = 4e-11
 Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 13/87 (14%)

Query: 632 IGNGGHGSVYRAELPSGEV---VAVK---KFHSSIPCDQIADQKEFLTEVQALTEI-RHR 684
           IG G  G V +A +    +    A+K   ++ S        D ++F  E++ L ++  H 
Sbjct: 33  IGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASK------DDHRDFAGELEVLCKLGHHP 86

Query: 685 NIVKFYGFCSHAQHSFLVYEFLERGSL 711
           NI+   G C H  + +L  E+   G+L
Sbjct: 87  NIINLLGACEHRGYLYLAIEYAPHGNL 113

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 63.5 bits (155), Expect = 5e-11
 Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 14/129 (10%)

Query: 592 GDRQSSNQNPQGLFSILNFEGKLVYDEIVRETNDFDAEYCIGNGGHGSVYRAE-LPSGEV 650
           G     + +  G  + L F+G +V   I  +   +     +G GG   V   E L  G  
Sbjct: 2   GSSHHHHHHSSGREN-LYFQGHMV--IIDNK--HYLFIQKLGEGGFSYVDLVEGLHDGHF 56

Query: 651 VAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHS----FLVYEFL 706
            A+K+    I C +  D++E   E        H NI++   +C   + +    +L+  F 
Sbjct: 57  YALKR----ILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWLLLPFF 112

Query: 707 ERGSLAAIL 715
           +RG+L   +
Sbjct: 113 KRGTLWNEI 121

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 63.5 bits (155), Expect = 5e-11
 Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 10/87 (11%)

Query: 632 IGNGGHGSVYRAEL-----PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNI 686
           +G G  G V           +GE+VAVK             +  +  E+  L  + H +I
Sbjct: 39  LGEGHFGKVSLYCYDPTNDGTGEMVAVKALK---ADAGPQHRSGWKQEIDILRTLYHEHI 95

Query: 687 VKFYGFCSHAQHS--FLVYEFLERGSL 711
           +K+ G C  A  +   LV E++  GSL
Sbjct: 96  IKYKGCCEDAGAASLQLVMEYVPLGSL 122

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 63.1 bits (154), Expect = 6e-11
 Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 8/99 (8%)

Query: 618 EIVRETNDFDAEYCIGNGGHGSVYRAELPSGE----VVAVKKFHSSIPCDQIADQKEFLT 673
            I  E     ++  IG G  G VY  E           A+K          +   + FL 
Sbjct: 15  LIPHERVVTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITE---MQQVEAFLR 71

Query: 674 EVQALTEIRHRNIVKFYGFCSHAQ-HSFLVYEFLERGSL 711
           E   +  + H N++   G     +    ++  ++  G L
Sbjct: 72  EGLLMRGLNHPNVLALIGIMLPPEGLPHVLLPYMCHGDL 110

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 63.9 bits (156), Expect = 6e-11
 Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 10/95 (10%)

Query: 618 EIVRETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQA 677
            +  +  +      IG G  G V   +   G  VAVK   +       A  + FL E   
Sbjct: 189 ALNMK--ELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKND------ATAQAFLAEASV 239

Query: 678 LTEIRHRNIVKFYGFCSHAQHSF-LVYEFLERGSL 711
           +T++RH N+V+  G     +    +V E++ +GSL
Sbjct: 240 MTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSL 274

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 61.6 bits (150), Expect = 7e-11
 Identities = 28/134 (20%), Positives = 57/134 (42%), Gaps = 9/134 (6%)

Query: 53  VTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQI-GNLTKLSYISLDSNQ 111
           +T I L    +   +   +FS + +L  +DLS N     +       L  L+ + L  N+
Sbjct: 34  ITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGNK 91

Query: 112 LSGKIPAEV-GLLTHLKVLSFQFNELDGSIPPEV-CQLSSIEELFLYSNHLNGSLPP-FL 168
           ++ ++P  +   L  L++L    N++   +  +    L ++  L LY N L  ++     
Sbjct: 92  IT-ELPKSLFEGLFSLQLLLLNANKI-NCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTF 148

Query: 169 GNLSNIVRLYINNN 182
             L  I  +++  N
Sbjct: 149 SPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 59.7 bits (145), Expect = 4e-10
 Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 8/134 (5%)

Query: 382 SLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQF 441
           ++T++ L  N +    P       +L  +D S N+ +   P++   L  L+ L L  N+ 
Sbjct: 33  TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92

Query: 442 VLELPKEL-EKLVQLSELDASHNLFGGEIP---FQICSLKSLEKLNLSHNNLSGLIPNCF 497
             ELPK L E L  L  L  + N     +    FQ   L +L  L+L  N L  +    F
Sbjct: 93  T-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQ--DLHNLNLLSLYDNKLQTIAKGTF 148

Query: 498 EGMHGLSIIDISDN 511
             +  +  + ++ N
Sbjct: 149 SPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 8/111 (7%)

Query: 408 EYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKEL-EKLVQLSELDASHNLFG 466
             +    N      P +     KL  + LSNNQ   EL  +  + L  L+ L    N   
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT 93

Query: 467 GEIP---FQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQ 514
            E+P   F+   L SL+ L L+ N ++ L  + F+ +H L+++ + DN+LQ
Sbjct: 94  -ELPKSLFE--GLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ 141

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 34/178 (19%), Positives = 57/178 (32%), Gaps = 49/178 (27%)

Query: 148 SSIEELFLYSNHLNGSLPPF-LGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFL 206
            +I E+ L  N +   +PP        + R+ ++NN +S                    L
Sbjct: 32  ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-------------------EL 71

Query: 207 PLSV-GNLTNLKSLGLMDNHLSGSIPPS-FGN-SMLTWLTLSGNHFTGYLPHNICRGGLL 263
                  L +L SL L  N ++  +P S F     L  L L+ N     L  +       
Sbjct: 72  APDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVD------- 122

Query: 264 EAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNF 321
            AF               ++  +L  + L  N L             +  + L++N F
Sbjct: 123 -AF---------------QDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 64.5 bits (157), Expect = 8e-11
 Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 12/93 (12%)

Query: 631 CIGNGGHGSVYRAE---LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIV 687
           CI +GG G +Y A    + +G  V +K    S   D  A Q   + E Q L E+ H +IV
Sbjct: 87  CIAHGGLGWIYLALDRNV-NGRPVVLKGLVHSG--DAEA-QAMAMAERQFLAEVVHPSIV 142

Query: 688 KFYGFCSHAQHS-----FLVYEFLERGSLAAIL 715
           + + F  H         ++V E++   SL    
Sbjct: 143 QIFNFVEHTDRHGDPVGYIVMEYVGGQSLKRSK 175

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 62.6 bits (153), Expect = 8e-11
 Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 13/88 (14%)

Query: 632 IGNGGHGSVYRAELPSGE------VVAVK--KFHSSIPCDQIADQKEFLTEVQALTEIRH 683
           +G    G VY+  L           VA+K  K  +  P      ++EF  E      ++H
Sbjct: 17  LGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGP-----LREEFRHEAMLRARLQH 71

Query: 684 RNIVKFYGFCSHAQHSFLVYEFLERGSL 711
            N+V   G  +  Q   +++ +   G L
Sbjct: 72  PNVVCLLGVVTKDQPLSMIFSYCSHGDL 99

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 62.3 bits (152), Expect = 9e-11
 Identities = 21/105 (20%), Positives = 41/105 (39%), Gaps = 14/105 (13%)

Query: 615 VYDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV--------VAVKKFHSSIPCDQIA 666
           V+ +I  E   F+    +G G    +++                V +K     +      
Sbjct: 1   VFHKIRNEDLIFNES--LGQGTFTKIFKGVRREVGDYGQLHETEVLLK----VLDKAHRN 54

Query: 667 DQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
             + F      ++++ H+++V  YG C     + LV EF++ GSL
Sbjct: 55  YSESFFEAASMMSKLSHKHLVLNYGVCVCGDENILVQEFVKFGSL 99

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 63.1 bits (154), Expect = 1e-10
 Identities = 35/158 (22%), Positives = 60/158 (37%), Gaps = 35/158 (22%)

Query: 582 FILRKQKSDSGDRQSSNQNPQGLFSILN--------------FEGKLVYD---EIVRETN 624
             LR+Q + S +  SS  +   L  I                 E +L  D   E  R+  
Sbjct: 24  IPLRRQVTVSAESSSSMNSNTPLVRITTRLSSTADTPMLAGVSEYELPEDPKWEFPRDKL 83

Query: 625 DFDAEYCIGNGGHGSVYRAEL--------PSGEVVAVK--KFHSSIPCDQIADQKEFLTE 674
                  +G G  G V  AE              VAVK  K  ++       D  + ++E
Sbjct: 84  TLGKP--LGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATE-----KDLSDLVSE 136

Query: 675 VQALTEI-RHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
           ++ +  I +H+NI+   G C+     +++ E+  +G+L
Sbjct: 137 MEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNL 174

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 61.8 bits (151), Expect = 1e-10
 Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 8/94 (8%)

Query: 618 EIVRETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQA 677
           E+ RE         +G G  G V+         VAVK                FL E   
Sbjct: 9   EVPRE--TLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGS-----MSPDAFLAEANL 61

Query: 678 LTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
           + +++H+ +V+ Y   +  +  +++ E++E GSL
Sbjct: 62  MKQLQHQRLVRLYAVVTQ-EPIYIITEYMENGSL 94

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 63.2 bits (154), Expect = 1e-10
 Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 8/94 (8%)

Query: 618 EIVRETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQA 677
           EI RE      E  +G G  G V+ A       VAVK              + FL E   
Sbjct: 184 EIPRE--SLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSM-----SVEAFLAEANV 236

Query: 678 LTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
           +  ++H  +VK +   +  +  +++ EF+ +GSL
Sbjct: 237 MKTLQHDKLVKLHAVVTK-EPIYIITEFMAKGSL 269

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 63.3 bits (154), Expect = 1e-10
 Identities = 23/131 (17%), Positives = 46/131 (35%), Gaps = 9/131 (6%)

Query: 586 KQKSDSGDRQSSNQNPQGLFSILNFEGKLVYDEIVRETNDFDAEYCI----GNGGHGSVY 641
             +     R     +      + +   +     +  + +     Y I    G G  G V+
Sbjct: 115 VDEQGKIVRGKGTVSSNYDNYVFDIWKQYYPQPVEIKHDHVLDHYDIHEELGTGAFGVVH 174

Query: 642 RA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSF 700
           R  E  +G   A K     +     +D++    E+Q ++ +RH  +V  +          
Sbjct: 175 RVTERATGNNFAAK----FVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMV 230

Query: 701 LVYEFLERGSL 711
           ++YEF+  G L
Sbjct: 231 MIYEFMSGGEL 241

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 62.3 bits (152), Expect = 1e-10
 Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 9/98 (9%)

Query: 618 EIVRETNDFDAEYCIGNGGHGSVYRAEL---PSGEV-VAVKKFHSSIPCDQIADQKEFLT 673
           EI         E  IG+G  G V    L      +V VA+K   +     Q   +++FL+
Sbjct: 45  EIEAS--RIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQ---RRDFLS 99

Query: 674 EVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
           E   + +  H NI++  G  +  + + +V E++E GSL
Sbjct: 100 EASIMGQFDHPNIIRLEGVVTRGRLAMIVTEYMENGSL 137

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 62.0 bits (151), Expect = 2e-10
 Identities = 25/104 (24%), Positives = 40/104 (38%), Gaps = 14/104 (13%)

Query: 618 EIVRETNDFDAEYCIGNGGHGSVYRAELPSGE----VVAVKKFHSSIPCDQIADQKEFLT 673
            I  +         +G G  GSV  A+L   +     VAVK   + I      D +EFL 
Sbjct: 19  LIPEQQFTLGRM--LGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASS--DIEEFLR 74

Query: 674 EVQALTEIRHRNIVKFYGFCSHAQ------HSFLVYEFLERGSL 711
           E   + E  H ++ K  G    ++         ++  F++ G L
Sbjct: 75  EAACMKEFDHPHVAKLVGVSLRSRAKGRLPIPMVILPFMKHGDL 118

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 61.9 bits (151), Expect = 2e-10
 Identities = 30/130 (23%), Positives = 55/130 (42%), Gaps = 24/130 (18%)

Query: 596 SSNQNPQGLFSILNFEGKLVYD---EIVRETNDFDAEYCIGNGGHGSVYRAELPSGE--- 649
             +Q+P  L  +  +E  L  D   E  R+         +G G  G V  AE    +   
Sbjct: 9   HHSQDPM-LAGVSEYE--LPEDPKWEFPRDKLTLGKP--LGEGAFGQVVMAEAVGIDKDK 63

Query: 650 -----VVAVK--KFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHSFL 701
                 VAVK  K  ++       D  + ++E++ +  I +H+NI+   G C+     ++
Sbjct: 64  PKEAVTVAVKMLKDDATEK-----DLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYV 118

Query: 702 VYEFLERGSL 711
           + E+  +G+L
Sbjct: 119 IVEYASKGNL 128

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 62.4 bits (152), Expect = 2e-10
 Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 9/108 (8%)

Query: 609 NFEGKLVYDEIVRETNDFDAEYCI----GNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCD 663
           +   K V   +  +       Y I    G+G  G V+R  E  +G V   K     I   
Sbjct: 32  DIWKKYVPQPVEVKQGSVYDYYDILEELGSGAFGVVHRCVEKATGRVFVAK----FINTP 87

Query: 664 QIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
              D+     E+  + ++ H  ++  +          L+ EFL  G L
Sbjct: 88  YPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFLSGGEL 135

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 18/109 (16%)

Query: 621 RETNDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKE-FLTEVQAL 678
           R   DF+   C+G GG G V+ A+        A+K+    I        +E  + EV+AL
Sbjct: 2   RYLTDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKR----IRLPNRELAREKVMREVKAL 57

Query: 679 TEIRHRNIVKFYGFC------------SHAQHSFLVYEFLERGSLAAIL 715
            ++ H  IV+++               S   + ++  +   + +L   +
Sbjct: 58  AKLEHPGIVRYFNAWLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWM 106

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 60.8 bits (148), Expect = 3e-10
 Identities = 58/216 (26%), Positives = 87/216 (40%), Gaps = 28/216 (12%)

Query: 44  GISCNDAGRVTNISLRNTGLSGTLRDFSFSSFPQLVHLD-LSLNGFFGTIPSQIGNLTKL 102
                        +L+   ++         +  +L  +D +  N         I  L  +
Sbjct: 16  DAFAE----TIKANLKKKSVT------DAVTQNELNSIDQIIANNSDIKSVQGIQYLPNV 65

Query: 103 SYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQ-LSSIEELFLYSNHLN 161
            Y++L  N+L   I A   L T+L  L    N+L  S+P  V   L++++EL L  N L 
Sbjct: 66  RYLALGGNKLH-DISALKEL-TNLTYLILTGNQL-QSLPNGVFDKLTNLKELVLVENQLQ 122

Query: 162 GSLPP-FLGNLSNIVRLYINNN---SLSGSILTNIGNLKFLFELD---LSFLPLSV-GNL 213
            SLP      L+N+  L + +N   SL   +   + NL  L  L    L  LP  V   L
Sbjct: 123 -SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELD-LSYNQLQSLPEGVFDKL 180

Query: 214 TNLKSLGLMDNHLSGSIPP-SFGN-SMLTWLTLSGN 247
           T LK L L  N L  S+P   F   + L ++ L  N
Sbjct: 181 TQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 50.8 bits (122), Expect = 6e-07
 Identities = 47/185 (25%), Positives = 75/185 (40%), Gaps = 34/185 (18%)

Query: 355 NMSQLQALDLSLNHI--VGEIPKELGKLNSLTKLILRGNQLTGRLPTEIG---SLIELEY 409
            ++ +  +  + + I  V  I      L ++  L L GN+L      +I     L  L Y
Sbjct: 39  ELNSIDQIIANNSDIKSVQGIQY----LPNVRYLALGGNKLH-----DISALKELTNLTY 89

Query: 410 LDFSANKFNNSVPESL-GNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGE 468
           L  + N+   S+P  +   L  L  L L  NQ         +KL  L+ L+ +HN     
Sbjct: 90  LILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN----- 143

Query: 469 IPFQICSLKS--------LEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNS 520
              Q+ SL          L +L+LS+N L  L    F+ +  L  + +  NQL+  VP+ 
Sbjct: 144 ---QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS-VPDG 199

Query: 521 TAFRN 525
             F  
Sbjct: 200 -VFDR 203

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 42/235 (17%), Positives = 79/235 (33%), Gaps = 45/235 (19%)

Query: 214 TNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHF 273
                  L    ++         + +  +  + +                          
Sbjct: 19  AETIKANLKKKSVT-DAVTQNELNSIDQIIANNS-------------------------- 51

Query: 274 QGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLY---PNLTFIDLSRNNFYGEISSNWG 330
                + ++   ++  + L GN L       +       NLT++ L+ N      +  + 
Sbjct: 52  DIKSVQGIQYLPNVRYLALGGNKLH-----DISALKELTNLTYLILTGNQLQSLPNGVFD 106

Query: 331 KCPKLGTLNVSMNNIT---GGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLI 387
           K   L  L +  N +     G+  +   ++ L  L+L+ N +         KL +LT+L 
Sbjct: 107 KLTNLKELVLVENQLQSLPDGVFDK---LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELD 163

Query: 388 LRGNQLTGRLPTEI-GSLIELEYLDFSANKFNNSVPE-SLGNLLKLHYLGLSNNQ 440
           L  NQL   LP  +   L +L+ L    N+   SVP+     L  L Y+ L +N 
Sbjct: 164 LSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQL-KSVPDGVFDRLTSLQYIWLHDNP 216

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 61.6 bits (150), Expect = 3e-10
 Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 7/95 (7%)

Query: 624 NDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQI--ADQKEFLTEVQALTE 680
             +     IG G  G     +    G    +K+    I   ++   +++E   EV  L  
Sbjct: 24  EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKE----INISRMSSKEREESRREVAVLAN 79

Query: 681 IRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
           ++H NIV++          ++V ++ E G L   +
Sbjct: 80  MKHPNIVQYRESFEENGSLYIVMDYCEGGDLFKRI 114

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 61.1 bits (149), Expect = 3e-10
 Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 8/97 (8%)

Query: 618 EIVRETNDFDAEYCIGNGGHGSVYRAEL--PSGEV-VAVKKFHSSIPCDQIADQKEFLTE 674
            + R+      +  +G G  GSV +        ++ VA+K         + AD +E + E
Sbjct: 5   FLKRDNLLIA-DIELGCGNFGSVRQGVYRMRKKQIDVAIKVLK---QGTEKADTEEMMRE 60

Query: 675 VQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
            Q + ++ +  IV+  G C       LV E    G L
Sbjct: 61  AQIMHQLDNPYIVRLIGVCQAEAL-MLVMEMAGGGPL 96

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 61.1 bits (149), Expect = 3e-10
 Identities = 26/125 (20%), Positives = 46/125 (36%), Gaps = 15/125 (12%)

Query: 598 NQNPQGLFSILNFEGKLVYD--EIVRETNDFDAEYCIGNGGHGSVYRAELPSGE----VV 651
           + +  GL    + E +   +   I R          +G G  GSV    L   +     V
Sbjct: 8   HHHSSGLVPRGSEELQNKLEDVVIDRNLLILGKI--LGEGEFGSVMEGNLKQEDGTSLKV 65

Query: 652 AVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ-----HSFLVYEFL 706
           AVK         +  + +EFL+E   + +  H N+++  G C            ++  F+
Sbjct: 66  AVKTMKLDNSSQR--EIEEFLSEAACMKDFSHPNVIRLLGVCIEMSSQGIPKPMVILPFM 123

Query: 707 ERGSL 711
           + G L
Sbjct: 124 KYGDL 128

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 61.6 bits (150), Expect = 3e-10
 Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 16/91 (17%)

Query: 632 IGNGGHGSVYRAELP--------SGEVVAVK--KFHSSIPCDQIADQKEFLTEVQALTEI 681
           +G G  G V  AE              VAVK  K  ++       D  + ++E++ +  I
Sbjct: 77  LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEK-----DLSDLISEMEMMKMI 131

Query: 682 -RHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
            +H+NI+   G C+     +++ E+  +G+L
Sbjct: 132 GKHKNIINLLGACTQDGPLYVIVEYASKGNL 162

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 60.4 bits (147), Expect = 4e-10
 Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 9/91 (9%)

Query: 631 CIGNGGHGSVYRA-ELPSGEVVAVKKFH-SSIPCDQIADQKEFLTEVQALTEIRHRNIVK 688
            IG G   +VY+  +  +   VA  +     +   +    + F  E + L  ++H NIV+
Sbjct: 33  EIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSER---QRFKEEAEMLKGLQHPNIVR 89

Query: 689 FYG----FCSHAQHSFLVYEFLERGSLAAIL 715
           FY          +   LV E +  G+L   L
Sbjct: 90  FYDSWESTVKGKKCIVLVTELMTSGTLKTYL 120

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 61.7 bits (150), Expect = 4e-10
 Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 8/94 (8%)

Query: 618 EIVRETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQA 677
           EI RE      E  +G G  G V+         VA+K              + FL E Q 
Sbjct: 180 EIPRE--SLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-----SPEAFLQEAQV 232

Query: 678 LTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
           + ++RH  +V+ Y   S  +  ++V E++ +GSL
Sbjct: 233 MKKLRHEKLVQLYAVVSE-EPIYIVTEYMSKGSL 265

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 60.9 bits (147), Expect = 4e-10
 Identities = 24/99 (24%), Positives = 34/99 (34%), Gaps = 8/99 (8%)

Query: 420 SVPESLGNLLKLHYLGLSNNQFVLELPKE-LEKLVQLSELDASHNLFGGEIP---FQICS 475
                L     L  L + N Q +  L    L  L +L  L    +     +    F    
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL-RFVAPDAFH--F 78

Query: 476 LKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQ 514
              L +LNLS N L  L     +G+  L  + +S N L 
Sbjct: 79  TPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.8 bits (126), Expect = 2e-07
 Identities = 20/104 (19%), Positives = 35/104 (33%), Gaps = 5/104 (4%)

Query: 438 NNQFVLELPKELEKLVQLSELDASHNLFGGEIP---FQICSLKSLEKLNLSHNNLSGLIP 494
                L+    L     L+EL   +      +     +   L  L  L +  + L  + P
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLR--GLGELRNLTIVKSGLRFVAP 73

Query: 495 NCFEGMHGLSIIDISDNQLQGPVPNSTAFRNAPVEALEGNKELC 538
           + F     LS +++S N L+     +    +     L GN   C
Sbjct: 74  DAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHC 117

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.9 bits (121), Expect = 7e-07
 Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 4/93 (4%)

Query: 71  SFSSFPQLVHLDLSLNGFFGTIPSQ-IGNLTKLSYISLDSNQLSGKIPAEV-GLLTHLKV 128
                  L  L +        +  + +  L +L  +++  + L   +  +       L  
Sbjct: 26  HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSR 84

Query: 129 LSFQFNELDGSIPPEVCQLSSIEELFLYSNHLN 161
           L+  FN L+ S+  +  Q  S++EL L  N L+
Sbjct: 85  LNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.5 bits (120), Expect = 9e-07
 Identities = 18/97 (18%), Positives = 28/97 (28%), Gaps = 4/97 (4%)

Query: 349 IPREIGNMSQLQALDLSLNHIVGEIPKE-LGKLNSLTKLILRGNQLTGRLPTEIGS-LIE 406
               +     L  L +     +  +    L  L  L  L +  + L   +  +       
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPR 81

Query: 407 LEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVL 443
           L  L+ S N    S+       L L  L LS N    
Sbjct: 82  LSRLNLSFNAL-ESLSWKTVQGLSLQELVLSGNPLHC 117

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.0 bits (111), Expect = 1e-05
 Identities = 24/116 (20%), Positives = 31/116 (26%), Gaps = 8/116 (6%)

Query: 142 PEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTN-IGNLKFLFE 200
           P+ C       L   +          L    N+  LYI N      +    +  L  L  
Sbjct: 2   PDACCPHGSSGL-RCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRN 60

Query: 201 LDLSFLPLSV------GNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFT 250
           L +    L             L  L L  N L      +     L  L LSGN   
Sbjct: 61  LTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 60.4 bits (147), Expect = 4e-10
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 8/85 (9%)

Query: 632 IGNGGHGSVYRAELPSGE----VVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIV 687
           IG G  G VY   L   +      AVK  +       I +  +FLTE   + +  H N++
Sbjct: 33  IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITD---IGEVSQFLTEGIIMKDFSHPNVL 89

Query: 688 KFYGFCSHAQHS-FLVYEFLERGSL 711
              G C  ++ S  +V  +++ G L
Sbjct: 90  SLLGICLRSEGSPLVVLPYMKHGDL 114

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 60.8 bits (148), Expect = 5e-10
 Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 10/99 (10%)

Query: 618 EIVRETNDFDAEYCIGNGGHGSVYRAEL--PSGEV---VAVKKFHSSIPCDQIADQKEFL 672
           EI         +  IG G  G VY+  L   SG+    VA+K   +     Q   + +FL
Sbjct: 40  EIHPS--CVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQ---RVDFL 94

Query: 673 TEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
            E   + +  H NI++  G  S  +   ++ E++E G+L
Sbjct: 95  GEAGIMGQFSHHNIIRLEGVISKYKPMMIITEYMENGAL 133

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 60.5 bits (147), Expect = 5e-10
 Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 13/101 (12%)

Query: 623 TNDFDAEYCIGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI 681
              F+    +GNG +G VY+   + +G++ A+K     +      +++E   E+  L + 
Sbjct: 23  AGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKV----MDVTG-DEEEEIKQEINMLKKY 77

Query: 682 -RHRNIVKFYG------FCSHAQHSFLVYEFLERGSLAAIL 715
             HRNI  +YG              +LV EF   GS+  ++
Sbjct: 78  SHHRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLI 118

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 61.0 bits (148), Expect = 5e-10
 Identities = 33/113 (29%), Positives = 48/113 (42%), Gaps = 6/113 (5%)

Query: 606 SILNFEGKLVYDEIVRETN--DFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPC 662
                E  L   + V E    DF+    +G G  G V++    PSG V+A K  H  I  
Sbjct: 13  QRKRLEAFLTQKQKVGELKDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEI-- 70

Query: 663 DQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
            + A + + + E+Q L E     IV FYG         +  E ++ GSL  +L
Sbjct: 71  -KPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVL 122

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 60.8 bits (148), Expect = 5e-10
 Identities = 31/140 (22%), Positives = 59/140 (42%), Gaps = 24/140 (17%)

Query: 585 RKQKSDSGDRQSSNQNPQGLFSILNFEGKLVYD---EIVRETNDFDAEYCIGNGGHGSVY 641
           R +      + + + + +  F +   E    YD   E  RE  +F     +G+G  G V 
Sbjct: 8   RYESQLQMVQVTGSSDNE-YFYVDFRE--YEYDLKWEFPRENLEFGKV--LGSGAFGKVM 62

Query: 642 RAEL------PSGEVVAVK---KFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYG 691
            A             VAVK   +   S      ++++  ++E++ +T++  H NIV   G
Sbjct: 63  NATAYGISKTGVSIQVAVKMLKEKADS------SEREALMSELKMMTQLGSHENIVNLLG 116

Query: 692 FCSHAQHSFLVYEFLERGSL 711
            C+ +   +L++E+   G L
Sbjct: 117 ACTLSGPIYLIFEYCCYGDL 136

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 60.4 bits (147), Expect = 5e-10
 Identities = 24/106 (22%), Positives = 41/106 (38%), Gaps = 19/106 (17%)

Query: 621 RETNDFDAEYCIGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALT 679
           R  +DF+    +G G  G V +A         A+KK    I   +       L+EV  L 
Sbjct: 3   RYASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKK----IRHTE-EKLSTILSEVMLLA 57

Query: 680 EIRHRNIVKFYGFCSHAQHS-------------FLVYEFLERGSLA 712
            + H+ +V++Y      ++              F+  E+ E G+L 
Sbjct: 58  SLNHQYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLY 103

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 61.4 bits (149), Expect = 5e-10
 Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 8/94 (8%)

Query: 618 EIVRETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQA 677
           EI RE      E  +G G  G V+         VA+K              + FL E Q 
Sbjct: 263 EIPRE--SLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-----SPEAFLQEAQV 315

Query: 678 LTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
           + ++RH  +V+ Y   S  +  ++V E++ +GSL
Sbjct: 316 MKKLRHEKLVQLYAVVSE-EPIYIVTEYMSKGSL 348

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 60.5 bits (147), Expect = 6e-10
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 3/91 (3%)

Query: 626 FDAEYCIGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHR 684
           F     IG+G  G+VY A ++ + EVVA+KK   S         ++ + EV+ L ++RH 
Sbjct: 56  FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNE-KWQDIIKEVRFLQKLRHP 114

Query: 685 NIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
           N +++ G       ++LV E+   GS + +L
Sbjct: 115 NTIQYRGCYLREHTAWLVMEYCL-GSASDLL 144

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 60.0 bits (146), Expect = 6e-10
 Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 632 IGNGGHGSVYRAEL--PSGEV--VAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIV 687
           +G+G  G V R E   PSG+   VAVK     +   Q     +F+ EV A+  + HRN++
Sbjct: 26  LGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVL-SQPEAMDDFIREVNAMHSLDHRNLI 84

Query: 688 KFYGFCSHAQHSFLVYEFLERGSL 711
           + YG         +V E    GSL
Sbjct: 85  RLYGVVL-TPPMKMVTELAPLGSL 107

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 60.0 bits (146), Expect = 7e-10
 Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 8/88 (9%)

Query: 632 IGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQK---EFLTEVQALTEIRHRNIV 687
           +G GG    +   +  + EV A K     +P   +       +   E+     + H+++V
Sbjct: 49  LGKGGFAKCFEISDADTKEVFAGK----IVPKSLLLKPHQREKMSMEISIHRSLAHQHVV 104

Query: 688 KFYGFCSHAQHSFLVYEFLERGSLAAIL 715
            F+GF       F+V E   R SL  + 
Sbjct: 105 GFHGFFEDNDFVFVVLELCRRRSLLELH 132

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 58.2 bits (141), Expect = 7e-10
 Identities = 38/147 (25%), Positives = 57/147 (38%), Gaps = 18/147 (12%)

Query: 277 IPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLG 336
           +  +L    +   + L+ NN+   I  +L    NL  + L RN    +I +       L 
Sbjct: 40  MDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLIK-KIENLDAVADTLE 96

Query: 337 TLNVSMNNITGGIPREIGNMSQLQALDLSLNHI--VGEIPKELGKLNSLTKLILRGNQLT 394
            L +S N I       I  +  L+ L +S N I   GEI  +L  L+ L  L+L GN L 
Sbjct: 97  ELWISYNQIA--SLSGIEKLVNLRVLYMSNNKITNWGEI-DKLAALDKLEDLLLAGNPLY 153

Query: 395 GRLPTE----------IGSLIELEYLD 411
                           +  L  L+ LD
Sbjct: 154 NDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 55.5 bits (134), Expect = 7e-09
 Identities = 46/194 (23%), Positives = 70/194 (36%), Gaps = 25/194 (12%)

Query: 283 NCTSLIRVRLNG--NNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNV 340
             T   +V L+G    +   +   L        + LS NN   +I S+      L  L++
Sbjct: 21  VATEAEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNI-EKI-SSLSGMENLRILSL 77

Query: 341 SMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTE 400
             N I   I         L+ L +S N I       + KL +L  L +  N++T     E
Sbjct: 78  GRNLIK-KIENLDAVADTLEELWISYNQI--ASLSGIEKLVNLRVLYMSNNKITN--WGE 132

Query: 401 IGSLIE---LEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKL----V 453
           I  L     LE L  + N   N   E   N     Y        V++    L+KL    V
Sbjct: 133 IDKLAALDKLEDLLLAGNPLYNDYKE---NNATSEYR-----IEVVKRLPNLKKLDGMPV 184

Query: 454 QLSELDASHNLFGG 467
            + E + ++   GG
Sbjct: 185 DVDEREQANVARGG 198

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 29/161 (18%), Positives = 57/161 (35%), Gaps = 23/161 (14%)

Query: 375 KELGKLNSLT--KLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLH 432
           ++          +L      +  ++   + +L   ++L  S N        SL  +  L 
Sbjct: 17  RKSVVATEAEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNI--EKISSLSGMENLR 73

Query: 433 YLGLSNNQFVLELPKELEKLVQ-LSELDASHNLFGGEIPFQICS------LKSLEKLNLS 485
            L L  N   ++  + L+ +   L EL  S+N        QI S      L +L  L +S
Sbjct: 74  ILSLGRNL--IKKIENLDAVADTLEELWISYN--------QIASLSGIEKLVNLRVLYMS 123

Query: 486 HNNLSGLIP-NCFEGMHGLSIIDISDNQLQGPVPNSTAFRN 525
           +N ++     +    +  L  + ++ N L      + A   
Sbjct: 124 NNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSE 164

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 49.3 bits (118), Expect = 7e-07
 Identities = 30/135 (22%), Positives = 62/135 (45%), Gaps = 7/135 (5%)

Query: 76  PQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNE 135
            + V L   +      + + +  L    +++L +N +  KI + +  + +L++LS   N 
Sbjct: 25  AEKVELHGMIPPIEK-MDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNL 81

Query: 136 LDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSG-SILTNIGN 194
           +   I        ++EEL++  N +  SL   +  L N+  LY++NN ++    +  +  
Sbjct: 82  IK-KIENLDAVADTLEELWISYNQIA-SLSG-IEKLVNLRVLYMSNNKITNWGEIDKLAA 138

Query: 195 LKFLFELDLSFLPLS 209
           L  L +L L+  PL 
Sbjct: 139 LDKLEDLLLAGNPLY 153

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 60.5 bits (147), Expect = 7e-10
 Identities = 21/108 (19%), Positives = 44/108 (40%), Gaps = 11/108 (10%)

Query: 611 EGKLVYDEIVRETNDFDAEY------CIGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCD 663
                +  +  +    ++ Y       +G G  G V++  E  +G  +A K     I   
Sbjct: 70  PAPFDHRIVTAKQGAVNSFYTVSKTEILGGGRFGQVHKCEETATGLKLAAK----IIKTR 125

Query: 664 QIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
            + D++E   E+  + ++ H N+++ Y          LV E+++ G L
Sbjct: 126 GMKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGGEL 173

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 60.2 bits (146), Expect = 8e-10
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 8/85 (9%)

Query: 632 IGNGGHGSVYRAELPSGE----VVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIV 687
           IG G  G VY   L   +      AVK  +       I +  +FLTE   + +  H N++
Sbjct: 97  IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITD---IGEVSQFLTEGIIMKDFSHPNVL 153

Query: 688 KFYGFCSHAQHS-FLVYEFLERGSL 711
              G C  ++ S  +V  +++ G L
Sbjct: 154 SLLGICLRSEGSPLVVLPYMKHGDL 178

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 60.1 bits (146), Expect = 8e-10
 Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 9/98 (9%)

Query: 618 EIVRETNDFDAEYCIGNGGHGSVYRAELPSGE----VVAVKKFHSSIPCDQIADQKEFLT 673
           E+     +   +  +G G  G V    L         VA+K         Q   +++FL 
Sbjct: 41  ELDAT--NISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQ---RRDFLG 95

Query: 674 EVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
           E   + +  H NI++  G  + ++   +V E++E GSL
Sbjct: 96  EASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSL 133

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 59.6 bits (145), Expect = 8e-10
 Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 12/101 (11%)

Query: 618 EIVRETNDFDAEYCIGNGGHGSVYRAEL------PSGEVVAVKKFHSSIPCDQIADQKEF 671
           E  R    F     +G G  G V  A         +   VAVK    S     + +++  
Sbjct: 19  EFPRNRLSFGKT--LGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAH---LTEREAL 73

Query: 672 LTEVQALTEI-RHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
           ++E++ L+ +  H NIV   G C+    + ++ E+   G L
Sbjct: 74  MSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDL 114

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 59.2 bits (144), Expect = 1e-09
 Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 6/83 (7%)

Query: 632 IGNGGHGSVYRAEL--PSGEV-VAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVK 688
           +G+G  G+V +           VAVK   +    +  A + E L E   + ++ +  IV+
Sbjct: 25  LGSGNFGTVKKGYYQMKKVVKTVAVKILKNE--ANDPALKDELLAEANVMQQLDNPYIVR 82

Query: 689 FYGFCSHAQHSFLVYEFLERGSL 711
             G C       LV E  E G L
Sbjct: 83  MIGICEAESW-MLVMEMAELGPL 104

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 60.7 bits (147), Expect = 1e-09
 Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 8/97 (8%)

Query: 618 EIVRETNDFDAEYCIGNGGHGSVYRAEL--PSGEV-VAVKKFHSSIPCDQIADQKEFLTE 674
            + R+ N   A+  +G G  GSV +        ++ VA+K         + AD +E + E
Sbjct: 331 FLKRD-NLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLK---QGTEKADTEEMMRE 386

Query: 675 VQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
            Q + ++ +  IV+  G C       LV E    G L
Sbjct: 387 AQIMHQLDNPYIVRLIGVCQAEAL-MLVMEMAGGGPL 422

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 59.1 bits (144), Expect = 1e-09
 Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 8/88 (9%)

Query: 632 IGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQK---EFLTEVQALTEIRHRNIV 687
           +G GG    +   +  + EV A K     +P   +       +   E+     + H+++V
Sbjct: 23  LGKGGFAKCFEISDADTKEVFAGK----IVPKSLLLKPHQREKMSMEISIHRSLAHQHVV 78

Query: 688 KFYGFCSHAQHSFLVYEFLERGSLAAIL 715
            F+GF       F+V E   R SL  + 
Sbjct: 79  GFHGFFEDNDFVFVVLELCRRRSLLELH 106

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 59.1 bits (144), Expect = 1e-09
 Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 10/98 (10%)

Query: 618 EIVRETNDFDAEYCIGNGGHGSVYRAEL--PSGEV--VAVKKFHSSIPCDQIADQKEFLT 673
            I RE    +    +G G  G VY        GE   VAVK        D    +++F++
Sbjct: 8   GIAREDVVLNRI--LGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDN---KEKFMS 62

Query: 674 EVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
           E   +  + H +IVK  G     + ++++ E    G L
Sbjct: 63  EAVIMKNLDHPHIVKLIGIIE-EEPTWIIMELYPYGEL 99

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 59.6 bits (145), Expect = 1e-09
 Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 9/85 (10%)

Query: 632 IGNGGHGSVYRAEL--PSGEV---VAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNI 686
           +G+G  G+VY+        +V   VA+K+             KE L E   +  + + ++
Sbjct: 23  LGSGAFGTVYKGLWIPEGEKVKIPVAIKELR---EATSPKANKEILDEAYVMASVDNPHV 79

Query: 687 VKFYGFCSHAQHSFLVYEFLERGSL 711
            +  G C       L+ + +  G L
Sbjct: 80  CRLLGICL-TSTVQLITQLMPFGCL 103

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 58.8 bits (143), Expect = 1e-09
 Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 25/112 (22%)

Query: 621 RETNDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALT 679
           R   DF     IG+GG G V++A+    G+   +K+    +  +     ++   EV+AL 
Sbjct: 8   RFGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKR----VKYNN----EKAEREVKALA 59

Query: 680 EIRHRNIVKFYGF----------------CSHAQHSFLVYEFLERGSLAAIL 715
           ++ H NIV + G                  S  +  F+  EF ++G+L   +
Sbjct: 60  KLDHVNIVHYNGCWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWI 111

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 30/134 (22%), Positives = 52/134 (38%), Gaps = 8/134 (5%)

Query: 53  VTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQI-GNLTKLSYISLDSNQ 111
              + L N   +       F   PQL  ++ S N     I        + ++ I L SN+
Sbjct: 34  TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSNR 92

Query: 112 LSGKIPAEV-GLLTHLKVLSFQFNELDGSIPPEV-CQLSSIEELFLYSNHLNGSLPP-FL 168
           L   +  ++   L  LK L  + N +   +  +    LSS+  L LY N +  ++ P   
Sbjct: 93  LEN-VQHKMFKGLESLKTLMLRSNRI-TCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAF 149

Query: 169 GNLSNIVRLYINNN 182
             L ++  L +  N
Sbjct: 150 DTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 34/168 (20%), Positives = 68/168 (40%), Gaps = 36/168 (21%)

Query: 91  TIPSQI-GNLTKLSYISLDSNQLSGKIPAEVGL--LTHLKVLSFQFNELDGSIPPEV-CQ 146
            IP  I     +L    L++N+ +  + A      L  L+ ++F  N++   I       
Sbjct: 25  KIPEHIPQYTAELR---LNNNEFT-VLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEG 79

Query: 147 LSSIEELFLYSNHLNGSLPP--FLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLS 204
            S + E+ L SN L  ++    F G L ++  L + +N                    ++
Sbjct: 80  ASGVNEILLTSNRLE-NVQHKMFKG-LESLKTLMLRSN-------------------RIT 118

Query: 205 FLPLSV-GNLTNLKSLGLMDNHLSGSIPPSFGNSM--LTWLTLSGNHF 249
            +       L++++ L L DN ++ ++ P   +++  L+ L L  N F
Sbjct: 119 CVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 56.2 bits (136), Expect = 5e-09
 Identities = 31/169 (18%), Positives = 59/169 (34%), Gaps = 33/169 (19%)

Query: 348 GIPREIGNMSQLQALDLSLNHIVGEIPK-ELGKLNSLTKLILRGNQLTGRLPTEI-GSLI 405
            IP           L L+ N            KL  L K+    N++T  +         
Sbjct: 29  HIP------QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGAS 81

Query: 406 ELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLF 465
            +  +  ++N+  N   +    L  L  L L +N+              ++ +   ++ F
Sbjct: 82  GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNR--------------ITCV--GNDSF 125

Query: 466 GGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQ 514
            G        L S+  L+L  N ++ + P  F+ +H LS +++  N   
Sbjct: 126 IG--------LSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 28/148 (18%), Positives = 60/148 (40%), Gaps = 25/148 (16%)

Query: 81  LDLSLNGFFGTIPSQI-GNLTKLSYISLDSNQLSGKIPAEV-GLLTHLKVLSFQFNELDG 138
           L L+ N F     + I   L +L  I+  +N+++  I        + +  +    N L+ 
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLE- 94

Query: 139 SIPPEVCQ-LSSIEELFLYSNHLNGSLPPFL-GNLSNIVRLYINNNSLSGSILTNIGNLK 196
           ++  ++ + L S++ L L SN +   +       LS++  L + +N ++           
Sbjct: 95  NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT----------- 142

Query: 197 FLFELDLSFLPLSVGNLTNLKSLGLMDN 224
                  +  P +   L +L +L L+ N
Sbjct: 143 -------TVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 21/113 (18%), Positives = 51/113 (45%), Gaps = 7/113 (6%)

Query: 52  RVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQI-GNLTKLSYISLDSN 110
           ++  I+  N  ++  + + +F     +  + L+ N     +  ++   L  L  + L SN
Sbjct: 58  QLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRL-ENVQHKMFKGLESLKTLMLRSN 115

Query: 111 QLSGKIPAEV-GLLTHLKVLSFQFNELDGSIPPEVCQ-LSSIEELFLYSNHLN 161
           +++  +  +    L+ +++LS   N++  ++ P     L S+  L L +N  N
Sbjct: 116 RIT-CVGNDSFIGLSSVRLLSLYDNQI-TTVAPGAFDTLHSLSTLNLLANPFN 166

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.0 bits (112), Expect = 6e-06
 Identities = 35/162 (21%), Positives = 53/162 (32%), Gaps = 33/162 (20%)

Query: 285 TSLIRVRLNGNNLTGNISEAL-GLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMN 343
                +RLN N  T   +  +    P L  I+ S N              K+  +     
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN--------------KITDI----- 72

Query: 344 NITGGIPREIG---NMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTE 400
                   E G     S +  + L+ N +     K    L SL  L+LR N++T  +  +
Sbjct: 73  --------EEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT-CVGND 123

Query: 401 I-GSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQF 441
               L  +  L    N+     P +   L  L  L L  N F
Sbjct: 124 SFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score = 59.1 bits (143), Expect = 2e-09
 Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 6/107 (5%)

Query: 611 EGKLVYDEIVRETNDFDAEYCI----GNGGHGSVYRA-ELPSGEVVAVKKFH-SSIPCDQ 664
            G+           +   +Y +    G G +G V  A E  +  + A+K  + + I    
Sbjct: 9   SGRENLYFQGGSLLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQIN 68

Query: 665 IADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
             D +   TEV+ + ++ H NI + Y      Q+  LV E    G L
Sbjct: 69  PKDVERIKTEVRLMKKLHHPNIARLYEVYEDEQYICLVMELCHGGHL 115

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 42/142 (29%), Positives = 58/142 (40%), Gaps = 11/142 (7%)

Query: 348 GIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEI-GSLIE 406
           GIP      +  Q L L  N I    P     L +L +L L  NQL   LP  +  SL +
Sbjct: 37  GIP------TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQ 89

Query: 407 LEYLDFSANKFNNSVPESL-GNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLF 465
           L  LD   N+    +P ++   L+ L  L +  N+   ELP+ +E+L  L+ L    N  
Sbjct: 90  LTVLDLGTNQL-TVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL 147

Query: 466 GGEIPFQICSLKSLEKLNLSHN 487
                     L SL    L  N
Sbjct: 148 KSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 56.2 bits (136), Expect = 5e-09
 Identities = 34/106 (32%), Positives = 49/106 (46%), Gaps = 5/106 (4%)

Query: 81  LDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEV-GLLTHLKVLSFQFNELDGS 139
           L L  N      P    +L  L  + L SNQL   +P  V   LT L VL    N+L   
Sbjct: 45  LYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT-V 102

Query: 140 IPPEVC-QLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSL 184
           +P  V  +L  ++ELF+  N L   LP  +  L+++  L ++ N L
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL 147

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 55.9 bits (135), Expect = 7e-09
 Identities = 45/161 (27%), Positives = 66/161 (40%), Gaps = 30/161 (18%)

Query: 92  IPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVC-QLSSI 150
           +P+ I    +   + L  NQ++   P     L +LK L    N+L  ++P  V   L+ +
Sbjct: 34  VPAGIPTNAQ--ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQL 90

Query: 151 EELFLYSNHLNGSLPP--FLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPL 208
             L L +N L   LP   F   L ++  L++  N L+                    LP 
Sbjct: 91  TVLDLGTNQLT-VLPSAVF-DRLVHLKELFMCCNKLTE-------------------LPR 129

Query: 209 SVGNLTNLKSLGLMDNHLSGSIPP-SFGN-SMLTWLTLSGN 247
            +  LT+L  L L  N L  SIP  +F   S LT   L GN
Sbjct: 130 GIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 49.7 bits (119), Expect = 8e-07
 Identities = 39/131 (29%), Positives = 58/131 (44%), Gaps = 5/131 (3%)

Query: 384 TKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESL-GNLLKLHYLGLSNNQFV 442
             L L  NQ+T   P    SLI L+ L   +N+   ++P  +  +L +L  L L  NQ +
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQ-L 100

Query: 443 LELPKEL-EKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMH 501
             LP  + ++LV L EL    N    E+P  I  L  L  L L  N L  +    F+ + 
Sbjct: 101 TVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLS 159

Query: 502 GLSIIDISDNQ 512
            L+   +  N 
Sbjct: 160 SLTHAYLFGNP 170

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 59.3 bits (144), Expect = 3e-09
 Identities = 30/101 (29%), Positives = 41/101 (40%), Gaps = 12/101 (11%)

Query: 619 IVRETNDFDAEYCI----GNGGHGSVYRA-ELPSGEVVAVKKFHSSIP---CDQIADQKE 670
           +   T  F   Y      G G  G V    +  +G+  AVK     I      Q  D++ 
Sbjct: 17  VQHSTAIFSDRYKGQRVLGKGSFGEVILCKDKITGQECAVK----VISKRQVKQKTDKES 72

Query: 671 FLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
            L EVQ L ++ H NI+K Y F     + +LV E    G L
Sbjct: 73  LLREVQLLKQLDHPNIMKLYEFFEDKGYFYLVGEVYTGGEL 113

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 58.9 bits (143), Expect = 3e-09
 Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 11/100 (11%)

Query: 619 IVRETNDFDAEYCI----GNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQI--ADQKEF 671
           I  +       Y      G+G +G V    +  +    A+K     I    +  +   + 
Sbjct: 28  ITSKKGHLSEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIK----IIRKTSVSTSSNSKL 83

Query: 672 LTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
           L EV  L  + H NI+K Y F    ++ +LV E  + G L
Sbjct: 84  LEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVMECYKGGEL 123

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 58.0 bits (141), Expect = 3e-09
 Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 17/104 (16%)

Query: 618 EIVRETNDFDAEYCIGNGGHGSVYRAEL------PSGEVVAVK--KFHSSIPCDQIADQK 669
           E  R+         +G G  G V  A+        +   VAVK  K  ++       + +
Sbjct: 23  EFPRDRLKLGKP--LGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHS-----EHR 75

Query: 670 EFLTEVQALTEI-RHRNIVKFYGFCSHA-QHSFLVYEFLERGSL 711
             ++E++ L  I  H N+V   G C+       ++ EF + G+L
Sbjct: 76  ALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNL 119

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 57.6 bits (140), Expect = 3e-09
 Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 9/96 (9%)

Query: 621 RETNDFDAEYCIGN----GGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLTEV 675
               D +  Y + N    G  G V  A +  +    A K     IP   + D   F  E+
Sbjct: 2   STKGDINQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAK----KIPKYFVEDVDRFKQEI 57

Query: 676 QALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
           + +  + H NI++ Y         +LV E    G L
Sbjct: 58  EIMKSLDHPNIIRLYETFEDNTDIYLVMELCTGGEL 93

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 57.2 bits (139), Expect = 4e-09
 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 12/86 (13%)

Query: 632 IGNGGHGSVYRAELPSGE----VVAVK--KFHSSIPCDQIADQKEFLTEVQALTEIRHRN 685
           IG G  G V++    S E     VA+K  K  +S        +++FL E   + +  H +
Sbjct: 23  IGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDS-----VREKFLQEALTMRQFDHPH 77

Query: 686 IVKFYGFCSHAQHSFLVYEFLERGSL 711
           IVK  G  +     +++ E    G L
Sbjct: 78  IVKLIGVIT-ENPVWIIMELCTLGEL 102

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 57.9 bits (140), Expect = 5e-09
 Identities = 16/89 (17%), Positives = 37/89 (41%), Gaps = 9/89 (10%)

Query: 631 CIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQI--ADQKEFLTEVQALTEIRH--RNI 686
            IG+GG   V++      ++ A+K     +  ++        +  E+  L +++     I
Sbjct: 63  QIGSGGSSKVFQVLNEKKQIYAIKY----VNLEEADNQTLDSYRNEIAYLNKLQQHSDKI 118

Query: 687 VKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
           ++ Y +    Q+ ++V E      L + L
Sbjct: 119 IRLYDYEITDQYIYMVMEC-GNIDLNSWL 146

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score = 57.2 bits (139), Expect = 6e-09
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 13/83 (15%)

Query: 632 IGNGGHGSVYRA-ELPSGEVVAVKKFHSS-----IPCDQIADQKEFLTEVQALTEIRHRN 685
           +G G +G V +     +G +VA+KKF  S     +    IA     + E++ L ++RH N
Sbjct: 33  VGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKK--IA-----MREIKLLKQLRHEN 85

Query: 686 IVKFYGFCSHAQHSFLVYEFLER 708
           +V     C   +  +LV+EF++ 
Sbjct: 86  LVNLLEVCKKKKRWYLVFEFVDH 108

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score = 56.8 bits (138), Expect = 6e-09
 Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 9/96 (9%)

Query: 621 RETNDFDAEYCI----GNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLTEV 675
            +T +    +      G+G    V+   +  +G++ A+K     I             E+
Sbjct: 2   MQTTNIRKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALK----CIKKSPAFRDSSLENEI 57

Query: 676 QALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
             L +I+H NIV          H +LV + +  G L
Sbjct: 58  AVLKKIKHENIVTLEDIYESTTHYYLVMQLVSGGEL 93

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 57.8 bits (140), Expect = 7e-09
 Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 14/107 (13%)

Query: 619 IVRETNDFDAEYCI----GNGGHGSVYRA-ELPSGEVVAVK---------KFHSSIPCDQ 664
           + ++       Y      G+G +G V    E       A+K           +S    + 
Sbjct: 27  VRKKEGKIGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNI 86

Query: 665 IADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
               +E   E+  L  + H NI+K +      ++ +LV EF E G L
Sbjct: 87  EKFHEEIYNEISLLKSLDHPNIIKLFDVFEDKKYFYLVTEFYEGGEL 133

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 56.6 bits (137), Expect = 8e-09
 Identities = 16/89 (17%), Positives = 38/89 (42%), Gaps = 9/89 (10%)

Query: 631 CIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQI--ADQKEFLTEVQALTEIRHRN--I 686
            IG+GG   V++      ++ A+K     +  ++        +  E+  L +++  +  I
Sbjct: 35  QIGSGGSSKVFQVLNEKKQIYAIKY----VNLEEADNQTLDSYRNEIAYLNKLQQHSDKI 90

Query: 687 VKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
           ++ Y +    Q+ ++V E      L + L
Sbjct: 91  IRLYDYEITDQYIYMVMEC-GNIDLNSWL 118

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 57.4 bits (139), Expect = 8e-09
 Identities = 25/102 (24%), Positives = 38/102 (37%), Gaps = 11/102 (10%)

Query: 617 DEIVRETNDFDAEYCI----GNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQI--ADQK 669
            E +     F   Y I    G G  G V +  +  + +  AVK     I        D  
Sbjct: 11  RENLYFQGTFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVK----VINKASAKNKDTS 66

Query: 670 EFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
             L EV+ L ++ H NI+K +     +   ++V E    G L
Sbjct: 67  TILREVELLKKLDHPNIMKLFEILEDSSSFYIVGELYTGGEL 108

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 56.7 bits (137), Expect = 9e-09
 Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 6/87 (6%)

Query: 632 IGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
           +G G   +V+R     +G++ A+K F++      +      + E + L ++ H+NIVK +
Sbjct: 17  LGQGATANVFRGRHKKTGDLFAIKVFNNI---SFLRPVDVQMREFEVLKKLNHKNIVKLF 73

Query: 691 GF--CSHAQHSFLVYEFLERGSLAAIL 715
                +  +H  L+ EF   GSL  +L
Sbjct: 74  AIEEETTTRHKVLIMEFCPCGSLYTVL 100

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 56.6 bits (137), Expect = 9e-09
 Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 9/85 (10%)

Query: 632 IGNGGHGSVYRAEL--PSGEV---VAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNI 686
           +G+G  G+VY+        +V   VA+K+             KE L E   +  + + ++
Sbjct: 23  LGSGAFGTVYKGLWIPEGEKVKIPVAIKELR---EATSPKANKEILDEAYVMASVDNPHV 79

Query: 687 VKFYGFCSHAQHSFLVYEFLERGSL 711
            +  G C       L+ + +  G L
Sbjct: 80  CRLLGICL-TSTVQLITQLMPFGCL 103

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 54.4 bits (131), Expect = 1e-08
 Identities = 36/131 (27%), Positives = 53/131 (40%), Gaps = 12/131 (9%)

Query: 293 NGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISS--NWGKCPKLGTLNVSMNNITGGIP 350
           N  +  G I      + NL F+ L        + S  N  K PKL  L +S N I GG+ 
Sbjct: 33  NCKSNDGKIEGLTAEFVNLEFLSLINVG----LISVSNLPKLPKLKKLELSENRIFGGLD 88

Query: 351 REIGNMSQLQALDLSLNHI--VGEIPKELGKLNSLTKLILRGNQLTGRL---PTEIGSLI 405
                +  L  L+LS N +  +  + + L KL  L  L L   ++T       +    L 
Sbjct: 89  MLAEKLPNLTHLNLSGNKLKDISTL-EPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLP 147

Query: 406 ELEYLDFSANK 416
           +L YLD    +
Sbjct: 148 QLTYLDGYDRE 158

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 46.7 bits (111), Expect = 4e-06
 Identities = 30/128 (23%), Positives = 50/128 (39%), Gaps = 20/128 (15%)

Query: 98  NLTKLSYISLDSNQLS-GKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLY 156
               +  + LD+ + + GKI        +L+ LS     L  S+   + +L  +++L L 
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKLELS 79

Query: 157 SNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNL 216
            N + G L      L N+  L ++ N L      +I  L+ L              L  L
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLK-----DISTLEPL------------KKLECL 122

Query: 217 KSLGLMDN 224
           KSL L + 
Sbjct: 123 KSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.9 bits (109), Expect = 7e-06
 Identities = 36/127 (28%), Positives = 50/127 (39%), Gaps = 7/127 (5%)

Query: 337 TLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGR 396
            L+   +N  G I         L+ L L    ++  +   L KL  L KL L  N++ G 
Sbjct: 30  VLDNCKSND-GKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKLELSENRIFGG 86

Query: 397 LPTEIGSLIELEYLDFSANKFNN-SVPESLGNLLKLHYLGLSNNQFVLEL---PKELEKL 452
           L      L  L +L+ S NK  + S  E L  L  L  L L N +            + L
Sbjct: 87  LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLL 146

Query: 453 VQLSELD 459
            QL+ LD
Sbjct: 147 PQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 3/89 (3%)

Query: 427 NLLKLHYLGLSNNQFVLELPKEL-EKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLS 485
               +  L L N +      + L  + V L  L   +             L  L+KL LS
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLP--KLPKLKKLELS 79

Query: 486 HNNLSGLIPNCFEGMHGLSIIDISDNQLQ 514
            N + G +    E +  L+ +++S N+L+
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.2 bits (102), Expect = 7e-05
 Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 8/124 (6%)

Query: 391 NQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELE 450
            +L  R P  +  L+    LD   +  +  +       + L +L L N    L     L 
Sbjct: 16  LELRNRTPAAVRELV----LDNCKSN-DGKIEGLTAEFVNLEFLSLINVG--LISVSNLP 68

Query: 451 KLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGL-IPNCFEGMHGLSIIDIS 509
           KL +L +L+ S N   G +      L +L  LNLS N L  +      + +  L  +D+ 
Sbjct: 69  KLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLF 128

Query: 510 DNQL 513
           + ++
Sbjct: 129 NCEV 132

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score = 56.4 bits (137), Expect = 1e-08
 Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 13/83 (15%)

Query: 632 IGNGGHGSVYRA-ELPSGEVVAVKKFHSS-----IPCDQIADQKEFLTEVQALTEIRHRN 685
           IG G +G V++     +G++VA+KKF  S     I    IA     L E++ L +++H N
Sbjct: 11  IGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKK--IA-----LREIRMLKQLKHPN 63

Query: 686 IVKFYGFCSHAQHSFLVYEFLER 708
           +V         +   LV+E+ + 
Sbjct: 64  LVNLLEVFRRKRRLHLVFEYCDH 86

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score = 56.5 bits (137), Expect = 1e-08
 Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 14/101 (13%)

Query: 621 RETNDFDAEY----CIGNGGHGSVYRA-ELPSGEVVAVKKFHSSIP-----CDQIADQKE 670
            +   F+  Y     IG G    V R     +G+  AVK     +             ++
Sbjct: 17  DDDVLFEDVYELCEVIGKGPFSVVRRCINRETGQQFAVK----IVDVAKFTSSPGLSTED 72

Query: 671 FLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
              E      ++H +IV+     S     ++V+EF++   L
Sbjct: 73  LKREASICHMLKHPHIVELLETYSSDGMLYMVFEFMDGADL 113

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 55.6 bits (135), Expect = 1e-08
 Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 4/94 (4%)

Query: 624 NDFDAEYCIGNGGHGSVYRA-ELPSGEVVAVKK-FHSSIPCDQIADQKEFLTEVQALTEI 681
            DF     +G G    VYRA  + +G  VA+K     ++    +  +     EV+   ++
Sbjct: 11  EDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQR--VQNEVKIHCQL 68

Query: 682 RHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
           +H +I++ Y +   + + +LV E    G +   L
Sbjct: 69  KHPSILELYNYFEDSNYVYLVLEMCHNGEMNRYL 102

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 16/89 (17%), Positives = 37/89 (41%), Gaps = 9/89 (10%)

Query: 631 CIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQI--ADQKEFLTEVQALTEIRH--RNI 686
            IG+GG   V++      ++ A+K     +  ++        +  E+  L +++     I
Sbjct: 16  QIGSGGSSKVFQVLNEKKQIYAIKY----VNLEEADNQTLDSYRNEIAYLNKLQQHSDKI 71

Query: 687 VKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
           ++ Y +    Q+ ++V E      L + L
Sbjct: 72  IRLYDYEITDQYIYMVMEC-GNIDLNSWL 99

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 55.3 bits (134), Expect = 2e-08
 Identities = 24/96 (25%), Positives = 36/96 (37%), Gaps = 11/96 (11%)

Query: 623 TNDFDAEYCI----GNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQI--ADQKEFLTEV 675
              F   Y I    G G  G V +  +  + +  AVK     I        D    L EV
Sbjct: 17  QGTFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVK----VINKASAKNKDTSTILREV 72

Query: 676 QALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
           + L ++ H NI+K +     +   ++V E    G L
Sbjct: 73  ELLKKLDHPNIMKLFEILEDSSSFYIVGELYTGGEL 108

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score = 55.7 bits (135), Expect = 2e-08
 Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 11/96 (11%)

Query: 623 TNDFDAEY-----CIGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQ 676
           +  F+  Y      +G G H  V     L + +  AVK     I       +     EV+
Sbjct: 7   SGRFEDVYQLQEDVLGEGAHARVQTCINLITSQEYAVK----IIEKQPGHIRSRVFREVE 62

Query: 677 ALTEIR-HRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
            L + + HRN+++   F       +LV+E +  GS+
Sbjct: 63  MLYQCQGHRNVLELIEFFEEEDRFYLVFEKMRGGSI 98

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 52.8 bits (127), Expect = 2e-08
 Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 8/117 (6%)

Query: 282 RNCTSLIRVRLNGNNLT-GNISEALGLYPNLTFIDLSRNNFYGEISS--NWGKCPKLGTL 338
           R  + +  + L+ +    G +      +  L F+          ++S  N  K  KL  L
Sbjct: 14  RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG----LTSIANLPKLNKLKKL 69

Query: 339 NVSMNNITGGIPREIGNMSQLQALDLSLNHIVG-EIPKELGKLNSLTKLILRGNQLT 394
            +S N ++GG+         L  L+LS N I      + L KL +L  L L   ++T
Sbjct: 70  ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 35/126 (27%), Positives = 50/126 (39%), Gaps = 13/126 (10%)

Query: 337 TLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGR 396
            L+ S +N  G +        +L+ L      +   I   L KLN L KL L  N+++G 
Sbjct: 23  VLDNSRSNE-GKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRVSGG 79

Query: 397 LPTEIGSLIELEYLDFSANKFNN-SVPESLGNLLKLHYLGLSNN---------QFVLELP 446
           L         L +L+ S NK  + S  E L  L  L  L L N          + V +L 
Sbjct: 80  LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLL 139

Query: 447 KELEKL 452
            +L  L
Sbjct: 140 PQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 6/119 (5%)

Query: 373 IPKELGK--LNSLTKLILRGNQLT-GRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLL 429
           I  EL     + + +L+L  ++   G+L        ELE+L         +   +L  L 
Sbjct: 7   IHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL--TSIANLPKLN 64

Query: 430 KLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGG-EIPFQICSLKSLEKLNLSHN 487
           KL  L LS+N+    L    EK   L+ L+ S N          +  L++L+ L+L + 
Sbjct: 65  KLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 46.2 bits (110), Expect = 5e-06
 Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 3/89 (3%)

Query: 427 NLLKLHYLGLSNNQF-VLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLS 485
               +  L L N++    +L    ++  +L  L   +      I   +  L  L+KL LS
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIA-NLPKLNKLKKLELS 72

Query: 486 HNNLSGLIPNCFEGMHGLSIIDISDNQLQ 514
            N +SG +    E    L+ +++S N+++
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 27/128 (21%), Positives = 53/128 (41%), Gaps = 20/128 (15%)

Query: 98  NLTKLSYISLDSNQLS-GKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLY 156
             + +  + LD+++ + GK+         L+ LS     L  SI   + +L+ +++L L 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLELS 72

Query: 157 SNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNL 216
            N ++G L        N+  L ++ N +      ++  ++ L              L NL
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIK-----DLSTIEPL------------KKLENL 115

Query: 217 KSLGLMDN 224
           KSL L + 
Sbjct: 116 KSLDLFNC 123

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 13/87 (14%)

Query: 632 IGNGGHGSVYRAEL----PSGEV-VAVK--KFHSSIPCDQIADQKEFLTEVQALTEIRHR 684
           +G+G  G+V++        S ++ V +K  +  S          +     + A+  + H 
Sbjct: 21  LGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGR-----QSFQAVTDHMLAIGSLDHA 75

Query: 685 NIVKFYGFCSHAQHSFLVYEFLERGSL 711
           +IV+  G C       LV ++L  GSL
Sbjct: 76  HIVRLLGLCP-GSSLQLVTQYLPLGSL 101

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 Length = 346

 Score = 55.7 bits (135), Expect = 2e-08
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 10/82 (12%)

Query: 632 IGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKE-----FLTEVQALTEIRHRN 685
           +G G   +VY+A +  + ++VA+KK    I     ++ K+      L E++ L E+ H N
Sbjct: 18  LGEGQFATVYKARDKNTNQIVAIKK----IKLGHRSEAKDGINRTALREIKLLQELSHPN 73

Query: 686 IVKFYGFCSHAQHSFLVYEFLE 707
           I+       H  +  LV++F+E
Sbjct: 74  IIGLLDAFGHKSNISLVFDFME 95

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 55.0 bits (133), Expect = 3e-08
 Identities = 24/99 (24%), Positives = 49/99 (49%), Gaps = 9/99 (9%)

Query: 622 ETNDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQI--ADQKEFLTEVQAL 678
              D++  Y IG G +G   +      G+++  K+    +    +  A+++  ++EV  L
Sbjct: 4   RAEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKE----LDYGSMTEAEKQMLVSEVNLL 59

Query: 679 TEIRHRNIVKFYG--FCSHAQHSFLVYEFLERGSLAAIL 715
            E++H NIV++Y           ++V E+ E G LA+++
Sbjct: 60  RELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVI 98

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 55.6 bits (134), Expect = 3e-08
 Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 6/87 (6%)

Query: 632 IGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
           +G G   +V+R     +G++ A+K F++      +      + E + L ++ H+NIVK +
Sbjct: 17  LGQGATANVFRGRHKKTGDLFAIKVFNNI---SFLRPVDVQMREFEVLKKLNHKNIVKLF 73

Query: 691 GF--CSHAQHSFLVYEFLERGSLAAIL 715
                +  +H  L+ EF   GSL  +L
Sbjct: 74  AIEEETTTRHKVLIMEFCPCGSLYTVL 100

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 56.1 bits (135), Expect = 3e-08
 Identities = 68/438 (15%), Positives = 132/438 (30%), Gaps = 52/438 (11%)

Query: 52  RVTNISLRNTGLS-GTLRDFSFSSFPQLVHLDLSLNGFFGT--IPSQIGNLTKLSYISLD 108
           ++ ++  R   +S   L   + +    L  L L     F T  + S + +  K+  + ++
Sbjct: 113 QLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLME 172

Query: 109 SNQLSGKIPAEVGLL----THLKVLSFQFNEL----DGSIPPEVCQLSSIEELFLYSNHL 160
            +  S K    +  L    T L+VL+F   E        +        S+  + +  +  
Sbjct: 173 ESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKV-GDFE 231

Query: 161 NGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLS--------FLPLSVGN 212
              L  F    +N+      + +    +     NL F  +L            +P+    
Sbjct: 232 ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPF 291

Query: 213 LTNLKSLGLMDNHLS--GSIPPSFGNSMLTWLTLSGN-------HFTGYLPH----NICR 259
              ++ L L+   L              L  L                Y        I R
Sbjct: 292 AAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIER 351

Query: 260 GGLLEAFIVSENHF-QGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLY-PNLTFIDLS 317
           G   +     E    Q  +    + C  L  + +  +++T    E++G Y  NL    L 
Sbjct: 352 GADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLV 411

Query: 318 RNNFYGEISSNWG---------KCPKLGTLNVSMN--NITGGIPREIG-NMSQLQALDLS 365
             +    I+              C KL      +    +T      IG     ++ + L 
Sbjct: 412 LLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLG 471

Query: 366 LNHIVGEIPKELGK-LNSLTKLILRGNQLTGR-LPTEIGSLIELEYLDFSANKFNNSVPE 423
                 E   E  +   +L KL +RG   + R +   +  L  L YL     + + +  +
Sbjct: 472 YVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQD 531

Query: 424 SLG---NLLKLHYLGLSN 438
            +        +  +    
Sbjct: 532 LMQMARPYWNIELIPSRR 549

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 42.2 bits (99), Expect = 5e-04
 Identities = 57/384 (14%), Positives = 109/384 (28%), Gaps = 65/384 (16%)

Query: 194 NLKFLFELDLSFLPLSVGNLTNLKSLGLMD-NHLSGSIPPSFGNS--MLTWLTLSGNHF- 249
           + + +   DL    L+     +L++L L   +  +     S       +  L +  + F 
Sbjct: 118 HFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFS 177

Query: 250 --TGYLPHNICRGG-LLEAFIVSENHFQGTIPESL----RNCTSLIRVRLNG-------- 294
              G   H + +    LE        F    P+ L    RNC SL+ V++          
Sbjct: 178 EKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVG 237

Query: 295 ----------------NNLTGNISEALGLYPNLTFIDLSRNNFYGE-ISSNWGKCPKLGT 337
                           N   G   + + L        L  +      +   +    ++  
Sbjct: 238 FFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRK 297

Query: 338 LNVSM-NNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKL-NSLTKLILRGNQLTG 395
           L++      T      I     L+ L+   N I     + L +    L +L +       
Sbjct: 298 LDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQ 356

Query: 396 RLPTEIGSL------------IELEYLDFSANKFNN----SVPESLGNLLKLHYLGLSNN 439
            +  E G +             ELEY+    +   N    S+   L NL     + L   
Sbjct: 357 GMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDRE 416

Query: 440 QFVLELPKE------LEKLVQLSELDASHN--LFGGEIPFQICSL-KSLEKLNLSHNNLS 490
           + + +LP +      L    +L                   I     ++  + L +   S
Sbjct: 417 ERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGES 476

Query: 491 GL-IPNCFEGMHGLSIIDISDNQL 513
              +     G   L  +++     
Sbjct: 477 DEGLMEFSRGCPNLQKLEMRGCCF 500

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 55.0 bits (131), Expect = 4e-08
 Identities = 28/162 (17%), Positives = 55/162 (33%), Gaps = 21/162 (12%)

Query: 347 GGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGS--L 404
             +   +  M  L  L +   + +    K      +L  L +    L   +  +I    L
Sbjct: 162 VDLSPVLDAMPLLNNLKIKGTNNLSIGKK---PRPNLKSLEIISGGLPDSVVEDILGSDL 218

Query: 405 IELEYLDF---SANKFNNSVPESLGNLL------KLHYLGLSNNQFVLELPKEL---EKL 452
             LE L       +   +        L        L +LG+ + +    + +     + L
Sbjct: 219 PNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDIL 278

Query: 453 VQLSELDASHNLFGGE----IPFQICSLKSLEKLNLSHNNLS 490
            QL  +D S  +   E    +   +  +K L+ +N+ +N LS
Sbjct: 279 PQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 55.6 bits (134), Expect = 4e-08
 Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 14/100 (14%)

Query: 618 EIVRETNDFDAEYCIGNGGHGSVYRAEL--PSGEV--VAVK--KFHSSIPCDQIADQKEF 671
           EI RE  +      IG G  G V++     P      VA+K  K  +S        +++F
Sbjct: 386 EIQRERIELGRC--IGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDS-----VREKF 438

Query: 672 LTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
           L E   + +  H +IVK  G  +     +++ E    G L
Sbjct: 439 LQEALTMRQFDHPHIVKLIGVIT-ENPVWIIMELCTLGEL 477

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 54.6 bits (132), Expect = 4e-08
 Identities = 21/94 (22%), Positives = 35/94 (37%), Gaps = 5/94 (5%)

Query: 625 DFDAEYCIGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-R 682
            F     +G+G +G V++      G + AVK+  S  P     D+   L EV +  ++ +
Sbjct: 58  SFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKR--SMSPFRGPKDRARKLAEVGSHEKVGQ 115

Query: 683 HRNIVKFYGFCSHAQHSFLVYEFLERGSLAAILS 716
           H   V+           +L  E     SL     
Sbjct: 116 HPCCVRLEQAWEEGGILYLQTELCG-PSLQQHCE 148

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 35/108 (32%), Positives = 50/108 (46%), Gaps = 8/108 (7%)

Query: 81  LDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEV-GLLTHLKVLSFQFNELDGS 139
           LDL  N            LT L+ + L  N+L   +P  V   LT L  L+   N+L  S
Sbjct: 33  LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ-S 90

Query: 140 IPPEVC-QLSSIEELFLYSNHLNGSLPP--FLGNLSNIVRLYINNNSL 184
           +P  V  +L+ ++EL L +N L  SLP   F   L+ +  L +  N L
Sbjct: 91  LPNGVFDKLTQLKELALNTNQLQ-SLPDGVF-DKLTQLKDLRLYQNQL 136

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 48/162 (29%), Positives = 66/162 (40%), Gaps = 31/162 (19%)

Query: 92  IPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVC-QLSSI 150
           +P+ I   T   Y+ L++N L          LT L  L    N+L  S+P  V  +L+S+
Sbjct: 22  VPTGIPAQTT--YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSL 78

Query: 151 EELFLYSNHLNGSLPP--FLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPL 208
             L L +N L  SLP   F   L+ +  L +N N L                     LP 
Sbjct: 79  TYLNLSTNQLQ-SLPNGVF-DKLTQLKELALNTNQLQS-------------------LPD 117

Query: 209 SV-GNLTNLKSLGLMDNHLSGSIPP-SFGN-SMLTWLTLSGN 247
            V   LT LK L L  N L  S+P   F   + L ++ L  N
Sbjct: 118 GVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 48/146 (32%), Positives = 66/146 (45%), Gaps = 18/146 (12%)

Query: 348 GIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEI-GSLIE 406
           GIP      +Q   LDL  N +         +L SLT+L L GN+L   LP  +   L  
Sbjct: 25  GIP------AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTS 77

Query: 407 LEYLDFSANKFNNSVPESL-GNLLKLHYLGLSNNQFVLELPKEL-EKLVQLSELDASHNL 464
           L YL+ S N+   S+P  +   L +L  L L+ NQ    LP  + +KL QL +L    N 
Sbjct: 78  LTYLNLSTNQL-QSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQ 135

Query: 465 FGGEIP---FQICSLKSLEKLNLSHN 487
               +P   F    L SL+ + L  N
Sbjct: 136 LKS-VPDGVFD--RLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 32/126 (25%), Positives = 47/126 (37%), Gaps = 18/126 (14%)

Query: 408 EYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGG 467
            YLD   N   +        L  L  L L  N+          KL  L+ L+ S N    
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN---- 86

Query: 468 EIPFQICSLKS--------LEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPN 519
               Q+ SL +        L++L L+ N L  L    F+ +  L  + +  NQL+  VP+
Sbjct: 87  ----QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS-VPD 141

Query: 520 STAFRN 525
              F  
Sbjct: 142 G-VFDR 146

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 55.0 bits (132), Expect = 4e-08
 Identities = 20/103 (19%), Positives = 32/103 (31%), Gaps = 16/103 (15%)

Query: 618 EIVRETNDFDAEYCIGNGGHGSVYRAE------LPSGEVVAVKKFHSSIPCDQIADQKEF 671
           E    +      + +G G    VY A         + +   +K    + P        EF
Sbjct: 59  EFQLGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPANP-------WEF 111

Query: 672 LTEVQALTEIR---HRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
               Q +  ++       +KFY        S LV E    G+L
Sbjct: 112 YIGTQLMERLKPSMQHMFMKFYSAHLFQNGSVLVGELYSYGTL 154

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 54.5 bits (131), Expect = 4e-08
 Identities = 40/235 (17%), Positives = 76/235 (32%), Gaps = 16/235 (6%)

Query: 217 KSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGT 276
           ++L L   +L   +     +  +       +     L  +     +    + +      T
Sbjct: 50  QTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVST 109

Query: 277 IPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSR-----NNFYGEISSNWGK 331
           +   L  C+ L  + L G  L+  I   L    NL  ++LS            + S+   
Sbjct: 110 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS--- 166

Query: 332 CPKLGTLNVS-MNNIT-GGIPREIG-NMSQLQALDLS-LNHIVGE--IPKELGKLNSLTK 385
           C +L  LN+S   + T   +   +      +  L+LS     + +  +   + +  +L  
Sbjct: 167 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 226

Query: 386 LILRG-NQLTGRLPTEIGSLIELEYLDFSA-NKFNNSVPESLGNLLKLHYLGLSN 438
           L L     L      E   L  L++L  S            LG +  L  L +  
Sbjct: 227 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 281

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 405

 Score = 54.8 bits (132), Expect = 5e-08
 Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 13/82 (15%)

Query: 632 IGNGGHGSVYRA---ELPSGEVVAVKKFHS-SIPCDQIADQKEFLTEVQALTEIRHRNIV 687
           +G G +G VY+A   +    +  A+K+     I             E+  L E++H N++
Sbjct: 29  VGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGISMSACR-------EIALLRELKHPNVI 81

Query: 688 KFYG-FCSHAQHS-FLVYEFLE 707
                F SHA    +L++++ E
Sbjct: 82  SLQKVFLSHADRKVWLLFDYAE 103

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score = 54.5 bits (132), Expect = 5e-08
 Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 10/92 (10%)

Query: 625 DFDAEYCI----GNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALT 679
           +   +Y I    G G  G V+R  E  S +    K     +      DQ     E+  L 
Sbjct: 2   ELYEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAK----FVKVKGT-DQVLVKKEISILN 56

Query: 680 EIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
             RHRNI+  +      +   +++EF+    +
Sbjct: 57  IARHRNILHLHESFESMEELVMIFEFISGLDI 88

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.6 bits (133), Expect = 5e-08
 Identities = 86/623 (13%), Positives = 173/623 (27%), Gaps = 181/623 (29%)

Query: 128 VLSFQFNELDGSIPPEVCQLSSIEELFL-YSNHLNGSLPPFLGNLSNIVR--LYIN-NNS 183
           VL   +  L   I  E  Q S +  +++   + L      F     N+ R   Y+    +
Sbjct: 86  VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY--NVSRLQPYLKLRQA 143

Query: 184 LSGSILTNIGNL---------KFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSF 234
           L    L    N+         K       +++ L V    + K    MD  +       F
Sbjct: 144 LLE--LRPAKNVLIDGVLGSGK-------TWVALDV--CLSYKVQCKMDFKI-------F 185

Query: 235 GNSMLTWLTLSGNHFTGYLPHNICR--GGLLEAFIVSENHFQGTIPESLRNCTSLIRVRL 292
                 WL L  N          C     +LE     +       P           ++L
Sbjct: 186 ------WLNL-KN----------CNSPETVLEML---QKLLYQIDPNWTSRSDHSSNIKL 225

Query: 293 NGNNLTGNISEALGL--YPN-LTFIDLSRNNFYGEISSNW------GKCPKL-GTLNVS- 341
             +++   +   L    Y N L  +          + +          C  L  T     
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLL--------NVQNAKAWNAFNLSCKILLTTRFKQV 277

Query: 342 MNNITGGIPREI------GNMSQLQALDL---SLNHIVGEIPKELGKLNSLT-KLILRGN 391
            + ++      I        ++  +   L    L+    ++P+E+   N     +I    
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII---- 333

Query: 392 QLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNL----LKLHYLGLSNNQFVLE--- 444
                   +  +  +  +   + +K    +  SL  L     +  +  LS    V     
Sbjct: 334 ---AESIRDGLATWD-NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS----VFPPSA 385

Query: 445 -LP-KELEKL-VQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMH 501
            +P   L  +   + + D         +        SL    +        I      + 
Sbjct: 386 HIPTILLSLIWFDVIKSDV-------MVVVNKLHKYSL----VEKQPKESTI-----SIP 429

Query: 502 GLSIIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGVKGMQPC-KVFSSH------K 554
            + +      +L+  + N  A   + V+     K             + F SH       
Sbjct: 430 SIYL------ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN 483

Query: 555 QNSGGKWFAVVFPVLGALFVSMALIAIFILRKQKSDSGDRQSSNQNPQGLFSILN----- 609
                +    +F     +F+       F+ +K + DS    ++      + + L      
Sbjct: 484 IEHPERM--TLFR---MVFLDFR----FLEQKIRHDS----TAWNASGSILNTLQQLKFY 530

Query: 610 ----FEGKLVYDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQI 665
                +    Y+ +V    DF                  LP  E   +   ++ +   +I
Sbjct: 531 KPYICDNDPKYERLVNAILDF------------------LPKIEENLICSKYTDLL--RI 570

Query: 666 ADQKEFLTEVQALTEIRHRNIVK 688
           A     + E +A+ E  H+ + +
Sbjct: 571 A----LMAEDEAIFEEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 1e-06
 Identities = 85/465 (18%), Positives = 146/465 (31%), Gaps = 134/465 (28%)

Query: 42  WYGISCNDAGRV---TNISLRNTGLSGTLRD-FSFSSFPQ-LVHLD-----LSLNGF-FG 90
            Y I  N   R    +NI LR   +   LR       +   L+ L       + N F   
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS 265

Query: 91  ------TIPSQIGNL---TKLSYISLDSNQLSGKIPAEV-GLLTHLKVLSFQFNELDGSI 140
                 T   Q+ +       ++ISLD +      P EV  LL  LK L  +  +L    
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHS-MTLTPDEVKSLL--LKYLDCRPQDL---- 318

Query: 141 PPEVCQ-----LSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNL 195
           P EV       LS I E           +   L    N    ++N + L+  I +++  L
Sbjct: 319 PREVLTTNPRRLSIIAES----------IRDGLATWDNW--KHVNCDKLTTIIESSLNVL 366

Query: 196 KF-----LFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTL--SGNH 248
           +      +F+  LS  P S  ++     L L+   +  S      N +  +  +      
Sbjct: 367 EPAEYRKMFD-RLSVFPPSA-HIP-TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423

Query: 249 FTGYLP----------------HNICRGGLLEAFIVSENHFQ-GTIPESLRN-CTSLIRV 290
            T  +P                H      +++ + + +       IP  L     S I  
Sbjct: 424 STISIPSIYLELKVKLENEYALHRS----IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479

Query: 291 RLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIP 350
            L        ++    ++ +  F++               K     T      N +G I 
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLE--------------QKIRHDSTA----WNASGSI- 520

Query: 351 REIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYL 410
                ++ LQ L     +I    PK    +N++   + +  +          +LI  +Y 
Sbjct: 521 -----LNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE----------NLICSKYT 565

Query: 411 DFSANKFNNSVPESLGNLLKLHYLGLSN-NQFVLELPKELEKLVQ 454
           D                LL+   + L   ++ + E   E  K VQ
Sbjct: 566 D----------------LLR---IALMAEDEAIFE---EAHKQVQ 588

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 54.8 bits (132), Expect = 6e-08
 Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 9/92 (9%)

Query: 625 DFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RH 683
            F  +  +G+G  G++    +     VAVK+      C   AD+     EVQ L E   H
Sbjct: 25  SFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPE--CFSFADR-----EVQLLRESDEH 77

Query: 684 RNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
            N+++++      Q  ++  E L   +L   +
Sbjct: 78  PNVIRYFCTEKDRQFQYIAIE-LCAATLQEYV 108

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score = 54.7 bits (132), Expect = 6e-08
 Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 15/83 (18%)

Query: 632 IGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
           IGNG  G VY+A+L  SGE+VA+KK           D++    E+Q + ++ H NIV+  
Sbjct: 62  IGNGSFGVVYQAKLCDSGELVAIKKVL--------QDKRFKNRELQIMRKLDHCNIVRLR 113

Query: 691 GFCSHAQHSF------LVYEFLE 707
            F   +          LV +++ 
Sbjct: 114 YFFYSSGEKKDEVYLNLVLDYVP 136

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 54.2 bits (131), Expect = 7e-08
 Identities = 20/102 (19%), Positives = 40/102 (39%), Gaps = 11/102 (10%)

Query: 617 DEIVRETNDFDAEY----CIGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQI--ADQK 669
           + ++  +  F   Y     +G G    V R     +G   A K     I   ++   D +
Sbjct: 18  EFMMNASTKFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAK----IINTKKLSARDFQ 73

Query: 670 EFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
           +   E +   +++H NIV+ +         +LV++ +  G L
Sbjct: 74  KLEREARICRKLQHPNIVRLHDSIQEESFHYLVFDLVTGGEL 115

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 54.2 bits (131), Expect = 7e-08
 Identities = 20/96 (20%), Positives = 40/96 (41%), Gaps = 7/96 (7%)

Query: 621 RETNDFDAEYC----IGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLTEV 675
                F  EY     +G G    V R  ++ +G+  A    ++     +  D ++   E 
Sbjct: 4   ITCTRFTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSAR--DHQKLEREA 61

Query: 676 QALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
           +    ++H NIV+ +   S   H +L+++ +  G L
Sbjct: 62  RICRLLKHPNIVRLHDSISEEGHHYLIFDLVTGGEL 97

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 53.3 bits (129), Expect = 8e-08
 Identities = 20/96 (20%), Positives = 38/96 (39%), Gaps = 11/96 (11%)

Query: 623 TNDFDAEYCI----GNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIA--DQKEFLTEV 675
           +  F   Y +    G G    V R     +G   A K     I   +++  D ++   E 
Sbjct: 1   STKFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAK----IINTKKLSARDFQKLEREA 56

Query: 676 QALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
           +   +++H NIV+ +         +LV++ +  G L
Sbjct: 57  RICRKLQHPNIVRLHDSIQEESFHYLVFDLVTGGEL 92

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 53.0 bits (128), Expect = 9e-08
 Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 10/101 (9%)

Query: 617 DEIVRETNDFDAEYC----IGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKE- 670
            E +      D  +     +G+G  G V+   E  SG    +K    +I  D+     E 
Sbjct: 11  RENLYFQGTIDDLFIFKRKLGSGAFGDVHLVEERSSGLERVIK----TINKDRSQVPMEQ 66

Query: 671 FLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
              E++ L  + H NI+K +       + ++V E  E G L
Sbjct: 67  IEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVMETCEGGEL 107

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 53.6 bits (129), Expect = 1e-07
 Identities = 43/340 (12%), Positives = 90/340 (26%), Gaps = 58/340 (17%)

Query: 146 QLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSF 205
            L ++E        L       L     +  L+ +    +      +  L  L +L+L+ 
Sbjct: 24  NLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHYEFQNQRFSAEV--LSSLRQLNLAG 81

Query: 206 LPLSVG-----------NLTNLKSLGLMDNHLS--GSIPPSFGNSMLTWLTLSGNHFT-- 250
           + ++                 L  + L    L   G             L L  N     
Sbjct: 82  VRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPE 141

Query: 251 ------GYLPHNICRGGLLEAFIVSENHFQGT----IPESLRNCTSLIRVRLNGNNLTGN 300
                   L H+ C+   +    +S N         + E L   TS+  + L    L   
Sbjct: 142 ACKDLRDLLLHDQCQ---ITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDE 198

Query: 301 ----ISEALGLYPNLTFIDLSRNNFYGE----ISSNWGKCPKLGTLNVSMNNIT------ 346
               ++  L     L  ++++ N         ++    + P L  L++  N ++      
Sbjct: 199 GLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQV 258

Query: 347 -GGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLI 405
              +       +++         +       L ++        R           +   +
Sbjct: 259 LRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRAR---------VQRHL 309

Query: 406 ELEYLDFSANKFNNSVPESLGNLLK----LHYLGLSNNQF 441
           EL   D   ++     P     LL+    +  L       
Sbjct: 310 ELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSS 349

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 53.6 bits (129), Expect = 1e-07
 Identities = 38/295 (12%), Positives = 76/295 (25%), Gaps = 55/295 (18%)

Query: 236 NSMLTWLTLSGNHFTG--------YLPHNICRGGLLEAFIVSENHFQG----TIPESLRN 283
            S L  L L+G   T          L         L+   ++          T+      
Sbjct: 71  LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHA---LDEVNLASCQLDPAGLRTLLPVFLR 127

Query: 284 CTSLIRVRLNGNNLTGN----ISEALGLYP-NLTFIDLSRNNFYGE----ISSNWGKCPK 334
              L    L  N+L       + + L      +T + LS N         +         
Sbjct: 128 ARKL---GLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTS 184

Query: 335 LGTLNVSMNNITGGIPREIGNM----SQLQALDLSLNHI----VGEIPKELGKLNSLTKL 386
           +  L++    +       +        QLQ L+++ N         + +   +  SL  L
Sbjct: 185 VTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELL 244

Query: 387 ILRGNQLT-------GRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNN 439
            L  N+L+         L         +          +      L  + +       N 
Sbjct: 245 HLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQR-------NL 297

Query: 440 QFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSL----KSLEKLNLSHNNLS 490
                    +++ ++L   D   +      P++   L      +  L     +  
Sbjct: 298 NSWDRA--RVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSG 350

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288

 Score = 53.3 bits (129), Expect = 1e-07
 Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 12/81 (14%)

Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKE-----FLTEVQALTEIRHRNI 686
           IG G +G VY+A+   GE  A+KK         +  + E      + E+  L E++H NI
Sbjct: 10  IGEGTYGVVYKAQNNYGETFALKKIR-------LEKEDEGIPSTTIREISILKELKHSNI 62

Query: 687 VKFYGFCSHAQHSFLVYEFLE 707
           VK Y      +   LV+E L+
Sbjct: 63  VKLYDVIHTKKRLVLVFEHLD 83

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 53.0 bits (128), Expect = 1e-07
 Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 11/102 (10%)

Query: 621 RETNDFDAEY----CIGNGGHGSVYRA-ELPSGEVVAVK-----KFHSSIPCDQIADQKE 670
             T+ F   Y     +G G    V R    P+ +  AVK        S    +    ++ 
Sbjct: 10  HSTHGFYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREA 69

Query: 671 FLTEVQALTEI-RHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
            L EV  L ++  H NI++           FLV++ +++G L
Sbjct: 70  TLKEVDILRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGEL 111

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 6/94 (6%)

Query: 624 NDFDAEYCIGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQ-ALTEI 681
            D      IG G +GSV +    PSG+++AVK+  S++      +QK+ L ++   +   
Sbjct: 22  EDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTV---DEKEQKQLLMDLDVVMRSS 78

Query: 682 RHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
               IV+FYG        ++  E +   S     
Sbjct: 79  DCPYIVQFYGALFREGDCWICMELMS-TSFDKFY 111

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 9/81 (11%)

Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFY 690
           +G G  G+V       G  VAVK+         IA       E++ LTE   H N++++Y
Sbjct: 23  LGYGSSGTVVFQGSFQGRPVAVKRMLID--FCDIALM-----EIKLLTESDDHPNVIRYY 75

Query: 691 GFCSHAQHSFLVYEFLERGSL 711
              +  +  ++  E     +L
Sbjct: 76  CSETTDRFLYIALELCN-LNL 95

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 24/107 (22%), Positives = 42/107 (39%), Gaps = 10/107 (9%)

Query: 614 LVYDEIVRETNDFDAEYCI----GNGGHGSVYRA-ELPSGEVVAVKKFH----SSIPCDQ 664
           L  D+          EY +    G+G  G V  A E  + + VA++       +     +
Sbjct: 121 LTVDDQSVYPKALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSARE 180

Query: 665 IADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
                   TE++ L ++ H  I+K   F     + ++V E +E G L
Sbjct: 181 ADPALNVETEIEILKKLNHPCIIKIKNFFDAEDY-YIVLELMEGGEL 226

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 52.2 bits (126), Expect = 2e-07
 Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 4/90 (4%)

Query: 624 NDFDAEYCIGNGGHGSVYRA-ELPSGEVVAVKKFH-SSIPCDQIADQKEFLTEVQALTEI 681
            DF+    +G G  G+VY A E  S  ++A+K    + +    +  Q     EV+  + +
Sbjct: 9   EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQ--LRREVEIQSHL 66

Query: 682 RHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
           RH NI++ YG+   A   +L+ E+   G++
Sbjct: 67  RHPNILRLYGYFHDATRVYLILEYAPLGTV 96

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ... Length = 299

 Score = 52.1 bits (126), Expect = 2e-07
 Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 13/82 (15%)

Query: 632 IGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKE-----FLTEVQALTEIRHRN 685
           IG G +G VY+A    +GEVVA+KK         +  + E      + E+  L E+ H N
Sbjct: 11  IGEGTYGVVYKARNKLTGEVVALKKIR-------LDTETEGVPSTAIREISLLKELNHPN 63

Query: 686 IVKFYGFCSHAQHSFLVYEFLE 707
           IVK           +LV+EFL 
Sbjct: 64  IVKLLDVIHTENKLYLVFEFLH 85

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 7/105 (6%)

Query: 81  LDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEV-GLLTHLKVLSFQFNELDGS 139
           L L  N F   +P ++ N   L+ I L +N++S  +  +    +T L  L   +N L   
Sbjct: 36  LYLDGNQF-TLVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRL-RC 92

Query: 140 IPPEVC-QLSSIEELFLYSNHLNGSLPPFL-GNLSNIVRLYINNN 182
           IPP     L S+  L L+ N ++  +P     +LS +  L I  N
Sbjct: 93  IPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 19/100 (19%)

Query: 434 LGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSL--------KSLEKLNLS 485
           L L  NQF L  PKEL     L+ +D S+N        +I +L          L  L LS
Sbjct: 36  LYLDGNQFTLV-PKELSNYKHLTLIDLSNN--------RISTLSNQSFSNMTQLLTLILS 86

Query: 486 HNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNSTAFRN 525
           +N L  + P  F+G+  L ++ +  N +   VP   AF +
Sbjct: 87  YNRLRCIPPRTFDGLKSLRLLSLHGNDISV-VPEG-AFND 124

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 11/95 (11%)

Query: 348 GIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEI-GSLIE 406
           GIPR++        L L  N     +PKEL     LT + L  N+++  L  +   ++ +
Sbjct: 28  GIPRDV------TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQ 79

Query: 407 LEYLDFSANKFNNSVPESL-GNLLKLHYLGLSNNQ 440
           L  L  S N+    +P      L  L  L L  N 
Sbjct: 80  LLTLILSYNRL-RCIPPRTFDGLKSLRLLSLHGND 113

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 12/109 (11%)

Query: 148 SSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNN---SLSGSILTNIGNLKFLFELD-- 202
             + EL+L  N     +P  L N  ++  + ++NN   +LS    +N+  L  L  L   
Sbjct: 31  RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLI-LSYN 88

Query: 203 -LSFLPLSV-GNLTNLKSLGLMDNHLSGSIPP-SFGN-SMLTWLTLSGN 247
            L  +P      L +L+ L L  N +S  +P  +F + S L+ L +  N
Sbjct: 89  RLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 15/103 (14%)

Query: 620 VRETNDFDAEYCI----GNGGHGSVYRA-ELPSGEVVAVKKFHSSIPC------DQIADQ 668
           V    + D  Y      G+G    V +  E  +G   A K     I         +   +
Sbjct: 3   VFRQENVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAK----FIKKRRTKSSRRGVSR 58

Query: 669 KEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
           ++   EV  L EI+H N++  +    +     L+ E +  G L
Sbjct: 59  EDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGEL 101

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score = 51.8 bits (125), Expect = 3e-07
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 14/82 (17%)

Query: 632 IGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKE-----FLTEVQALTEIRHRN 685
           +GNG + +VY+     +G  VA+K+           D +E      + E+  + E++H N
Sbjct: 13  LGNGTYATVYKGLNKTTGVYVALKEVK--------LDSEEGTPSTAIREISLMKELKHEN 64

Query: 686 IVKFYGFCSHAQHSFLVYEFLE 707
           IV+ Y          LV+EF++
Sbjct: 65  IVRLYDVIHTENKLTLVFEFMD 86

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311

 Score = 51.8 bits (125), Expect = 3e-07
 Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 12/81 (14%)

Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKE-----FLTEVQALTEIRHRNI 686
           +G G +G VY+A+   G +VA+K+         +  + E      + E+  L E+ H NI
Sbjct: 29  VGEGTYGVVYKAKDSQGRIVALKRIR-------LDAEDEGIPSTAIREISLLKELHHPNI 81

Query: 687 VKFYGFCSHAQHSFLVYEFLE 707
           V         +   LV+EF+E
Sbjct: 82  VSLIDVIHSERCLTLVFEFME 102

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score = 51.5 bits (124), Expect = 4e-07
 Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 2/85 (2%)

Query: 632 IGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
           +G GG  +VY AE       VA+K         +   ++ F  EV   +++ H+NIV   
Sbjct: 19  LGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKR-FEREVHNSSQLSHQNIVSMI 77

Query: 691 GFCSHAQHSFLVYEFLERGSLAAIL 715
                    +LV E++E  +L+  +
Sbjct: 78  DVDEEDDCYYLVMEYIEGPTLSEYI 102

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 52.0 bits (125), Expect = 4e-07
 Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 10/136 (7%)

Query: 586 KQKSDSGDRQSSNQNPQGLFSILNFEGKLVYDEIVRETNDFDAEY----CIGNGGHGSVY 641
                   + +  Q            G            +F  +Y     IG G    V 
Sbjct: 52  ANLLAEAKKLNDAQPKGTENLYFQSMGPEDELPDWAAAKEFYQKYDPKDVIGRGVSSVVR 111

Query: 642 RA-ELPSGEVVAVK---KFHSSIPCDQIADQKEFL-TEVQALTEIR-HRNIVKFYGFCSH 695
           R     +G   AVK        +  +Q+ + +E    E   L ++  H +I+        
Sbjct: 112 RCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSYES 171

Query: 696 AQHSFLVYEFLERGSL 711
           +   FLV++ + +G L
Sbjct: 172 SSFMFLVFDLMRKGEL 187

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score = 51.6 bits (124), Expect = 4e-07
 Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 7/96 (7%)

Query: 623 TNDFDAEYCI----GNGGHGSVYRA-ELPSGEVVAVKKFH--SSIPCDQIADQKEFLTEV 675
               +  Y I    G+G    V +  E  +G   A K      S    +   ++E   EV
Sbjct: 7   QQKVEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREV 66

Query: 676 QALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
             L ++ H NI+  +    +     L+ E +  G L
Sbjct: 67  SILRQVLHPNIITLHDVYENRTDVVLILELVSGGEL 102

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A Length = 292

 Score = 51.4 bits (124), Expect = 4e-07
 Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 13/82 (15%)

Query: 632 IGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKE-----FLTEVQALTEIRHRN 685
           IG G +G+V++A    + E+VA+K+         + D  E      L E+  L E++H+N
Sbjct: 10  IGEGTYGTVFKAKNRETHEIVALKRVR-------LDDDDEGVPSSALREICLLKELKHKN 62

Query: 686 IVKFYGFCSHAQHSFLVYEFLE 707
           IV+ +      +   LV+EF +
Sbjct: 63  IVRLHDVLHSDKKLTLVFEFCD 84

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score = 51.5 bits (124), Expect = 4e-07
 Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 7/96 (7%)

Query: 623 TNDFDAEYCI----GNGGHGSVYRA-ELPSGEVVAVKKFH--SSIPCDQIADQKEFLTEV 675
               +  Y I    G+G    V +  E  +G   A K      S    +   ++E   EV
Sbjct: 7   QQKVEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREV 66

Query: 676 QALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
             L ++ H N++  +    +     L+ E +  G L
Sbjct: 67  SILRQVLHHNVITLHDVYENRTDVVLILELVSGGEL 102

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score = 51.0 bits (123), Expect = 5e-07
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 3/83 (3%)

Query: 632 IGNGGHGSVYRA-ELPSGEVVAVK--KFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVK 688
           +G+G    V +  +  +G+  A K  K        +   ++E   EV  L EIRH NI+ 
Sbjct: 13  LGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIIT 72

Query: 689 FYGFCSHAQHSFLVYEFLERGSL 711
            +    +     L+ E +  G L
Sbjct: 73  LHDIFENKTDVVLILELVSGGEL 95

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* Length = 329

 Score = 51.1 bits (123), Expect = 5e-07
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 13/82 (15%)

Query: 632 IGNGGHGSVYRA-ELPSGEVVAVKKFHSS-----IPCDQIADQKEFLTEVQALTEIRHRN 685
           +G G +G VY+A +  + E VA+K+         +P   I        EV  L E++HRN
Sbjct: 42  LGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAI-------REVSLLKELQHRN 94

Query: 686 IVKFYGFCSHAQHSFLVYEFLE 707
           I++      H     L++E+ E
Sbjct: 95  IIELKSVIHHNHRLHLIFEYAE 116

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 50.7 bits (122), Expect = 6e-07
 Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 8/92 (8%)

Query: 624 NDFDAEYCIGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIAD---QKEFLTEVQALT 679
           +DFD    +G G  G+VY A E  +  ++A+K     +   Q+     + +   E++  +
Sbjct: 14  DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKV----LFKSQLEKEGVEHQLRREIEIQS 69

Query: 680 EIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
            +RH NI++ Y +    +  +L+ EF  RG L
Sbjct: 70  HLRHPNILRMYNYFHDRKRIYLMLEFAPRGEL 101

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score = 50.7 bits (122), Expect = 7e-07
 Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 2/85 (2%)

Query: 632 IGNGGHGSVYRAELPS-GEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
           +G GG G VY AE      +VA+K    ++  D +  +     E +    ++  ++V  +
Sbjct: 42  VGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVF-RTRMQREARTAGRLQEPHVVPIH 100

Query: 691 GFCSHAQHSFLVYEFLERGSLAAIL 715
            F       ++    +    LAA+L
Sbjct: 101 DFGEIDGQLYVDMRLINGVDLAAML 125

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} Length = 324

 Score = 50.7 bits (122), Expect = 7e-07
 Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 14/82 (17%)

Query: 632 IGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKE-----FLTEVQALTEIRHRN 685
           +G G + +VY+     +  +VA+K+           + +E      + EV  L +++H N
Sbjct: 10  LGEGTYATVYKGKSKLTDNLVALKEIR--------LEHEEGAPCTAIREVSLLKDLKHAN 61

Query: 686 IVKFYGFCSHAQHSFLVYEFLE 707
           IV  +      +   LV+E+L+
Sbjct: 62  IVTLHDIIHTEKSLTLVFEYLD 83

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 50.3 bits (121), Expect = 7e-07
 Identities = 21/94 (22%), Positives = 44/94 (46%), Gaps = 6/94 (6%)

Query: 624 NDFDAEYCIGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQ-ALTEI 681
           +D +    +G G +G V +   +PSG+++AVK+  +++      +QK  L ++  ++  +
Sbjct: 7   DDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATV---NSQEQKRLLMDLDISMRTV 63

Query: 682 RHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
                V FYG        ++  E ++  SL    
Sbjct: 64  DCPFTVTFYGALFREGDVWICMELMD-TSLDKFY 96

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 50.9 bits (122), Expect = 8e-07
 Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 13/93 (13%)

Query: 632 IGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR-HRNIVKF 689
           +  GG   VY A+ + SG   A+K+    +  ++    +  + EV  + ++  H NIV+F
Sbjct: 36  LAEGGFAFVYEAQDVGSGREYALKR----LLSNEEEKNRAIIQEVCFMKKLSGHPNIVQF 91

Query: 690 YGFCSHAQHS-------FLVYEFLERGSLAAIL 715
               S  +         FL+   L +G L   L
Sbjct: 92  CSAASIGKEESDTGQAEFLLLTELCKGQLVEFL 124

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 51.2 bits (122), Expect = 8e-07
 Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 12/92 (13%)

Query: 632 IGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLT-EVQALTEIRHRNIVKF 689
           +G GG G V R     +GE VA+K+       +     +E    E+Q + ++ H N+V  
Sbjct: 22  LGTGGFGYVLRWIHQDTGEQVAIKQCRQ----ELSPKNRERWCLEIQIMKKLNHPNVVSA 77

Query: 690 Y------GFCSHAQHSFLVYEFLERGSLAAIL 715
                     +      L  E+ E G L   L
Sbjct: 78  REVPDGLQKLAPNDLPLLAMEYCEGGDLRKYL 109

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score = 50.3 bits (121), Expect = 9e-07
 Identities = 15/102 (14%), Positives = 34/102 (33%), Gaps = 13/102 (12%)

Query: 619 IVRETNDFDAEYCI-----GNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIA--DQKE 670
             +   +F+  Y +     G G    V +     +G+  A K     +   +     + E
Sbjct: 19  YFQSMENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAK----FLKKRRRGQDCRAE 74

Query: 671 FLTEVQALTEIRHR-NIVKFYGFCSHAQHSFLVYEFLERGSL 711
            L E+  L   +    ++  +    +     L+ E+   G +
Sbjct: 75  ILHEIAVLELAKSCPRVINLHEVYENTSEIILILEYAAGGEI 116

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} Length = 360

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 21/99 (21%)

Query: 621 RETNDFDAEYCIGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEF----LTEV 675
           +E + F  E   G G  G+V    E  +G  VA+KK         +     F    L  +
Sbjct: 20  KEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKK---------VIQDPRFRNRELQIM 70

Query: 676 QALTEIRHRNIVK-FYGFCSHAQHSF------LVYEFLE 707
           Q L  + H NIV+    F +  +         +V E++ 
Sbjct: 71  QDLAVLHHPNIVQLQSYFYTLGERDRRDIYLNVVMEYVP 109

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 5/94 (5%)

Query: 624 NDFDAEYCIGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQAL-TEI 681
           ND +    +G+G  G V++     +G V+AVK+   S       + K  L ++  +    
Sbjct: 25  NDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSG---NKEENKRILMDLDVVLKSH 81

Query: 682 RHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
               IV+ +G        F+  E +   +     
Sbjct: 82  DCPYIVQCFGTFITNTDVFIAMELMGTCAEKLKK 115

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 50.7 bits (121), Expect = 1e-06
 Identities = 77/502 (15%), Positives = 139/502 (27%), Gaps = 73/502 (14%)

Query: 41  AWYGISCNDAGRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLT 100
           +WY I   +      + + N              FP++  ++L     F           
Sbjct: 36  SWYEI---ERWCRRKVFIGNCYAVSPAT--VIRRFPKVRSVELKGKPHFADFNLVPDGWG 90

Query: 101 KLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHL 160
              Y  +++      + +    L  +++        D  +        + + L L S   
Sbjct: 91  GYVYPWIEA------MSSSYTWLEEIRLKRMVVT--DDCLELIAKSFKNFKVLVLSSCEG 142

Query: 161 --NGSLPPFLGNLSNIVRLYINNNS---LSGSILTNIG-NLKFLFELDLSFLPLSVG--- 211
                L        N+  L +  +    +SG  L++       L  L++S L   V    
Sbjct: 143 FSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSA 202

Query: 212 ------NLTNLKSLGLMDN-HLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLE 264
                    NLKSL L     L            L  L   G            R  +  
Sbjct: 203 LERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYT-------AEVRPDVYS 255

Query: 265 AFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGE 324
                          +L  C  L  +    + +   +     +   LT ++LS       
Sbjct: 256 GLS-----------VALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSY 304

Query: 325 -ISSNWGKCPKLGTLNVSMNNIT-GGIPREIGNMSQLQALDLSLNHIVGEIP-------- 374
            +     +CPKL  L V  + I   G+         L+ L +  +      P        
Sbjct: 305 DLVKLLCQCPKLQRLWVL-DYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQG 363

Query: 375 -KELGK-LNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLH 432
              +      L  ++    Q+T        +LI +      A    N     L  +    
Sbjct: 364 LVSVSMGCPKLESVLYFCRQMTNA------ALITI------ARNRPNMTRFRLCIIEPKA 411

Query: 433 YLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGL 492
              L+     +     +E    L  L  S  L      +     K +E L+++    S L
Sbjct: 412 PDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDL 471

Query: 493 -IPNCFEGMHGLSIIDISDNQL 513
            + +   G   L  ++I D   
Sbjct: 472 GMHHVLSGCDSLRKLEIRDCPF 493

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 49.9 bits (119), Expect = 1e-06
 Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 4/79 (5%)

Query: 621 RETNDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALT 679
           R   DF+   C+G GG G V+ A+        A+K+       ++   +++ + EV+AL 
Sbjct: 3   RYLTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLP---NRELAREKVMREVKALA 59

Query: 680 EIRHRNIVKFYGFCSHAQH 698
           ++ H  IV+++        
Sbjct: 60  KLEHPGIVRYFNAWLETPP 78

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 6/85 (7%)

Query: 632 IGNGGHGSVYRA-ELPSGEVVAVKKFH----SSIPCDQIADQKEFLTEVQALTEIRHRNI 686
           +G+G  G V  A E  + + VA+K       +     +        TE++ L ++ H  I
Sbjct: 18  LGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCI 77

Query: 687 VKFYGFCSHAQHSFLVYEFLERGSL 711
           +K   F     + ++V E +E G L
Sbjct: 78  IKIKNFFDAEDY-YIVLELMEGGEL 101

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 28/128 (21%), Positives = 52/128 (40%), Gaps = 18/128 (14%)

Query: 586 KQKSDSGDRQSSNQNPQGLFSILNFEGKLVYDEIVRETNDFDAEYCIGNGGHGSVYRAEL 645
                +G + +   +P  +  +L  +GK      +     +     IGNG  G V++A+L
Sbjct: 6   SNAPLNGVKLNPLDDPNKVIKVLASDGKTGEQREIA----YTNCKVIGNGSFGVVFQAKL 61

Query: 646 PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVK-FYGFCSHAQHS----- 699
              + VA+KK           D++    E+Q +  ++H N+V     F S+         
Sbjct: 62  VESDEVAIKKVLQ--------DKRFKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFL 113

Query: 700 FLVYEFLE 707
            LV E++ 
Sbjct: 114 NLVLEYVP 121

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 11/96 (11%)

Query: 621 RETNDFDAEYCI----GNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLTEV 675
              +     + +    G G    VYR  +  + +  A+K    +       D+K   TE+
Sbjct: 46  SNRDALSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKT------VDKKIVRTEI 99

Query: 676 QALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
             L  + H NI+K            LV E +  G L
Sbjct: 100 GVLLRLSHPNIIKLKEIFETPTEISLVLELVTGGEL 135

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score = 49.2 bits (118), Expect = 3e-06
 Identities = 21/104 (20%), Positives = 37/104 (35%), Gaps = 16/104 (15%)

Query: 615 VYDEIVRETNDFDAEY----CIGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQK 669
           +  ++ R +  F   Y     IG G +    R     +    AVK          I   K
Sbjct: 9   IVQQLHRNSIQFTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVK---------IIDKSK 59

Query: 670 E-FLTEVQAL-TEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
                E++ L    +H NI+         ++ ++V E ++ G L
Sbjct: 60  RDPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVTELMKGGEL 103

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score = 49.2 bits (118), Expect = 3e-06
 Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 21/101 (20%)

Query: 621 RETNDFDAEYCIGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKE-F----LTE 674
            E + ++    IG G  G V++A    +G+ VA+KK         + ++KE F    L E
Sbjct: 14  DEVSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVL-------MENEKEGFPITALRE 66

Query: 675 VQALTEIRHRNIVKFYGFCSHAQHS--------FLVYEFLE 707
           ++ L  ++H N+V     C              +LV++F E
Sbjct: 67  IKILQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCE 107

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score = 48.8 bits (117), Expect = 3e-06
 Identities = 26/99 (26%), Positives = 37/99 (37%), Gaps = 16/99 (16%)

Query: 622 ETNDFDAEY-------CIGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLT 673
           + + F   Y        +G G      +     S +  AVK     I     A+ ++   
Sbjct: 2   KDSPFYQHYDLDLKDKPLGEGSFSICRKCVHKKSNQAFAVK----IISKRMEANTQK--- 54

Query: 674 EVQALTEIR-HRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
           E+ AL     H NIVK +       H+FLV E L  G L
Sbjct: 55  EITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGGEL 93

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* Length = 336

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 20/101 (19%)

Query: 622 ETNDFDAEY-----CIGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLTEV 675
           +      +Y      +G G +G V       +G+  A+K          + D  +   EV
Sbjct: 22  KKYAVTDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALK---------LLYDSPKARQEV 72

Query: 676 QALTEI-RHRNIVKFYGFCSHAQHS----FLVYEFLERGSL 711
               +     +IV       +  H      ++ E +E G L
Sbjct: 73  DHHWQASGGPHIVCILDVYENMHHGKRCLLIIMECMEGGEL 113

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 6/111 (5%)

Query: 54  TNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQI-GNLTKLSYISLDSNQL 112
           T + L +  L     D  F   P LV L+L  N     I        + +  + L  N++
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQLGENKI 90

Query: 113 SGKIPAEV-GLLTHLKVLSFQFNELDGSIPPEVC-QLSSIEELFLYSNHLN 161
             +I  ++   L  LK L+   N++   + P     L+S+  L L SN  N
Sbjct: 91  K-EISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASNPFN 139

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 16/114 (14%)

Query: 148 SSIEELFLYSNHLNGSLPP--FLGNLSNIVRLYINNNSLSGSI-------LTNIGNLKFL 198
               EL L  N L   +      G L ++V+L +  N L+  I        ++I  L  L
Sbjct: 29  LHTTELLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQEL-QL 85

Query: 199 FELDLSFLPLSV-GNLTNLKSLGLMDNHLSGSIPP-SFGN-SMLTWLTLSGNHF 249
            E  +  +   +   L  LK+L L DN +S  + P SF + + LT L L+ N F
Sbjct: 86  GENKIKEISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASNPF 138

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.1 bits (102), Expect = 9e-05
 Identities = 20/102 (19%), Positives = 40/102 (39%), Gaps = 19/102 (18%)

Query: 433 YLGLSNNQF-VLELPKELEKLVQLSELDASHNLFGGEIPFQICS--------LKSLEKLN 483
            L L++N+   +       +L  L +L+   N        Q+             +++L 
Sbjct: 33  ELLLNDNELGRISSDGLFGRLPHLVKLELKRN--------QLTGIEPNAFEGASHIQELQ 84

Query: 484 LSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNSTAFRN 525
           L  N +  +    F G+H L  +++ DNQ+   V    +F +
Sbjct: 85  LGENKIKEISNKMFLGLHQLKTLNLYDNQISC-VMPG-SFEH 124

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 24/107 (22%), Positives = 47/107 (43%), Gaps = 5/107 (4%)

Query: 338 LNVSMNNITGGIPREI-GNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGR 396
           L ++ N +       + G +  L  L+L  N + G  P      + + +L L  N++   
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-E 92

Query: 397 LPTEI-GSLIELEYLDFSANKFNNSVPE-SLGNLLKLHYLGLSNNQF 441
           +  ++   L +L+ L+   N+  + V   S  +L  L  L L++N F
Sbjct: 93  ISNKMFLGLHQLKTLNLYDNQI-SCVMPGSFEHLNSLTSLNLASNPF 138

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 47.7 bits (114), Expect = 7e-06
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 7/83 (8%)

Query: 632 IGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQI--ADQKEFLTEVQALTEIRHRNIVK 688
           IG G    V  A  + +G  VA+K     I   Q+     ++   EV+ +  + H NIVK
Sbjct: 23  IGKGNFAKVKLARHILTGREVAIK----IIDKTQLNPTSLQKLFREVRIMKILNHPNIVK 78

Query: 689 FYGFCSHAQHSFLVYEFLERGSL 711
            +      +  +L+ E+   G +
Sbjct: 79  LFEVIETEKTLYLIMEYASGGEV 101

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 46.1 bits (110), Expect = 8e-06
 Identities = 31/95 (32%), Positives = 39/95 (41%), Gaps = 10/95 (10%)

Query: 348 GIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEI-GSLIE 406
           GIP      S    L+L  N +         KL  LTKL L  NQ+   LP  +   L +
Sbjct: 25  GIP------SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTK 77

Query: 407 LEYLDFSANKFNNSVPESL-GNLLKLHYLGLSNNQ 440
           L  L    NK   S+P  +   L +L  L L  NQ
Sbjct: 78  LTILYLHENKL-QSLPNGVFDKLTQLKELALDTNQ 111

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 6/90 (6%)

Query: 72  FSSFPQLVHLDLSLNGFFGTIPSQI-GNLTKLSYISLDSNQLSGKIPAEV-GLLTHLKVL 129
           F    QL  L LS N    ++P  +   LTKL+ + L  N+L   +P  V   LT LK L
Sbjct: 48  FDKLTQLTKLSLSQNQI-QSLPDGVFDKLTKLTILYLHENKLQ-SLPNGVFDKLTQLKEL 105

Query: 130 SFQFNELDGSIPPEVC-QLSSIEELFLYSN 158
           +   N+L  S+P  +  +L+S+++++L++N
Sbjct: 106 ALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 40.3 bits (95), Expect = 6e-04
 Identities = 38/138 (27%), Positives = 56/138 (40%), Gaps = 31/138 (22%)

Query: 116 IPAEVGLLTHLKVLSFQFNELDGSIPPEVC-QLSSIEELFLYSNHLNGSLPP--FLGNLS 172
           +P   G+ +    L  + N+L  S+P  V  +L+ + +L L  N +  SLP   F   L+
Sbjct: 22  VPT--GIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVF-DKLT 76

Query: 173 NIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSV-GNLTNLKSLGLMDNHLSGSIP 231
            +  LY++ N L                     LP  V   LT LK L L  N L  S+P
Sbjct: 77  KLTILYLHENKLQS-------------------LPNGVFDKLTQLKELALDTNQLK-SVP 116

Query: 232 P-SFGN-SMLTWLTLSGN 247
              F   + L  + L  N
Sbjct: 117 DGIFDRLTSLQKIWLHTN 134

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 47.4 bits (112), Expect = 1e-05
 Identities = 7/63 (11%), Positives = 19/63 (30%), Gaps = 2/63 (3%)

Query: 632 IGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
           +  G    V+   ++   E  A+K F       + ++ +       A   +   +  +  
Sbjct: 70  LRVGDRSVVFLVRDVERLEDFALKVFTMGAENSR-SELERLHEATFAAARLLGESPEEAR 128

Query: 691 GFC 693
              
Sbjct: 129 DRR 131

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} Length = 458

 Score = 47.5 bits (113), Expect = 1e-05
 Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 8/82 (9%)

Query: 632 IGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
           IG G +G V  A +     VVA+KK       + + D K  L E+  L  + H ++VK  
Sbjct: 61  IGTGSYGHVCEAYDKLEKRVVAIKKILR--VFEDLIDCKRILREIAILNRLNHDHVVKVL 118

Query: 691 G-FCSHAQHSF----LVYEFLE 707
                     F    +V E  +
Sbjct: 119 DIVIPKDVEKFDELYVVLEIAD 140

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* Length = 299

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 15/86 (17%)

Query: 632 IGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKF 689
           +G G +G V +     + E  A+K          + D  +   EV+      +  +IV+ 
Sbjct: 26  LGLGINGKVLQIFNKRTQEKFALK---------MLQDCPKARREVELHWRASQCPHIVRI 76

Query: 690 YGFC----SHAQHSFLVYEFLERGSL 711
                   +  +   +V E L+ G L
Sbjct: 77  VDVYENLYAGRKCLLIVMECLDGGEL 102

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 23/140 (16%), Positives = 40/140 (28%), Gaps = 19/140 (13%)

Query: 276 TIPESLRNCTSLIRVRLNGNNLTGN-----ISEALGLYPNLTFIDLSRNNFYGEISSNWG 330
           T+     N   L  V LN             +EAL     +    +        ++    
Sbjct: 27  TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALA 86

Query: 331 KC----PKLGTLNVSMNNITGGIPREIGNM----SQLQALDLSLNH--IVGEIPKELGKL 380
           +       L +LNV  N I+G     +       + L  L +      +   +  E+  +
Sbjct: 87  EMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANM 146

Query: 381 ----NSLTKLILRGNQLTGR 396
                +L K      Q   R
Sbjct: 147 LEKNTTLLKFGYHFTQQGPR 166

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Length = 400

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 15/86 (17%)

Query: 632 IGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKF 689
           +G G +G V +     + E  A+K          + D  +   EV+      +  +IV+ 
Sbjct: 70  LGLGINGKVLQIFNKRTQEKFALK---------MLQDCPKARREVELHWRASQCPHIVRI 120

Query: 690 YGFC----SHAQHSFLVYEFLERGSL 711
                   +  +   +V E L+ G L
Sbjct: 121 VDVYENLYAGRKCLLIVMECLDGGEL 146

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359

 Score = 46.1 bits (109), Expect = 3e-05
 Identities = 24/106 (22%), Positives = 41/106 (38%), Gaps = 13/106 (12%)

Query: 618 EIVRETNDFDAEYCIGNGGHGSVYRAEL------PSGEVVAVKKFHSSIPCDQIADQKEF 671
           E  R+         +G G  G V  A+        +   VAVK            + +  
Sbjct: 18  EFPRDRLKLGKP--LGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHS---EHRAL 72

Query: 672 LTEVQALTEI-RHRNIVKFYGFCS-HAQHSFLVYEFLERGSLAAIL 715
           ++E++ L  I  H N+V   G C+       ++ EF + G+L+  L
Sbjct: 73  MSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYL 118

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311

 Score = 45.7 bits (109), Expect = 3e-05
 Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 10/91 (10%)

Query: 632 IGNGGHGSVYRAE---LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVK 688
           +G GG   V+ A          VAVK   + +  D     + F  E Q    + H  IV 
Sbjct: 20  LGFGGMSEVHLARDLRD--HRDVAVKVLRADLARDPSFYLR-FRREAQNAAALNHPAIVA 76

Query: 689 FY--GF--CSHAQHSFLVYEFLERGSLAAIL 715
            Y  G          ++V E+++  +L  I+
Sbjct: 77  VYDTGEAETPAGPLPYIVMEYVDGVTLRDIV 107

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} Length = 383

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 9/58 (15%)

Query: 632 IGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVK 688
           +G G  G V    ++ SG+  A+KK           D +    E+  +  + H NI+K
Sbjct: 15  LGTGSFGIVCEVFDIESGKRFALKKVLQ--------DPRYKNRELDIMKVLDHVNIIK 64

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score = 44.9 bits (107), Expect = 4e-05
 Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 6/82 (7%)

Query: 632 IGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLT-EVQALTEIRHRNIVKF 689
           +G G +G V  A    + E VAVK     +   +  D  E +  E+     + H N+VKF
Sbjct: 15  LGEGAYGEVQLAVNRVTEEAVAVK----IVDMKRAVDCPENIKKEICINKMLNHENVVKF 70

Query: 690 YGFCSHAQHSFLVYEFLERGSL 711
           YG        +L  E+   G L
Sbjct: 71  YGHRREGNIQYLFLEYCSGGEL 92

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308

 Score = 44.9 bits (107), Expect = 5e-05
 Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 24/93 (25%)

Query: 632 IGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLTEV--QALTEI------- 681
           IG G +G+VY+A +  SG  VA+K          + +       +    + E+       
Sbjct: 17  IGVGAYGTVYKARDPHSGHFVALKSVR-------VPNGGGGGGGLPISTVREVALLRRLE 69

Query: 682 --RHRNIVKFYGFCSHAQHS-----FLVYEFLE 707
              H N+V+    C+ ++        LV+E ++
Sbjct: 70  AFEHPNVVRLMDVCATSRTDREIKVTLVFEHVD 102

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 44.7 bits (106), Expect = 6e-05
 Identities = 16/101 (15%), Positives = 39/101 (38%), Gaps = 14/101 (13%)

Query: 624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVK-------------KFHSSIPCDQIADQKE 670
           ND+     +  G    +   E    +  A+K                ++      +   +
Sbjct: 31  NDYRIIRTLNQGKFNKIILCE-KDNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDD 89

Query: 671 FLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
           F  E+Q +T+I++   +   G  ++    +++YE++E  S+
Sbjct: 90  FKNELQIITDIKNEYCLTCEGIITNYDEVYIIYEYMENDSI 130

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 44.7 bits (106), Expect = 6e-05
 Identities = 21/84 (25%), Positives = 31/84 (36%), Gaps = 7/84 (8%)

Query: 632 IGNGGHGSVYRAE-LPSGEVVAVK-----KFHSSIPCDQIADQKEFLTEVQALTEIRHRN 685
           +G+G  G V+ A      + V VK     K       +     K  L E+  L+ + H N
Sbjct: 32  LGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTL-EIAILSRVEHAN 90

Query: 686 IVKFYGFCSHAQHSFLVYEFLERG 709
           I+K      +     LV E    G
Sbjct: 91  IIKVLDIFENQGFFQLVMEKHGSG 114

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} Length = 362

 Score = 44.6 bits (106), Expect = 7e-05
 Identities = 22/113 (19%), Positives = 41/113 (36%), Gaps = 16/113 (14%)

Query: 611 EGKLVYDEIVRETNDFDAEY----CIGNGGHGSVYRAELPSGEVVAVKK-------FHSS 659
           +G+    +++ E +   + Y     I +G +G+V       G  VA+K+         + 
Sbjct: 5   KGEAAMRDLIAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTV 64

Query: 660 IPCDQIADQKEFLTEVQALTEIRHRNIVKFYG-FCSHAQHSF----LVYEFLE 707
                    K  L E++ L    H NI+     F    + +     LV E + 
Sbjct: 65  NILSDSFLCKRVLREIRLLNHFHHPNILGLRDIFVHFEEPAMHKLYLVTELMR 117

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score = 44.2 bits (105), Expect = 8e-05
 Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 6/82 (7%)

Query: 632 IGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLT-EVQALTEIRHRNIVKF 689
           +G G +G V  A    + E VAVK     +   +  D  E +  E+     + H N+VKF
Sbjct: 15  LGEGAYGEVQLAVNRVTEEAVAVK----IVDMKRAVDCPENIKKEICINKMLNHENVVKF 70

Query: 690 YGFCSHAQHSFLVYEFLERGSL 711
           YG        +L  E+   G L
Sbjct: 71  YGHRREGNIQYLFLEYCSGGEL 92

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* Length = 432

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 8/82 (9%)

Query: 632 IGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
           IG G +G VY A +  + + VA+KK +     + + D K  L E+  L  ++   I++ Y
Sbjct: 34  IGRGSYGYVYLAYDKNTEKNVAIKKVNR--MFEDLIDCKRILREITILNRLKSDYIIRLY 91

Query: 691 G-FCSHAQHSF----LVYEFLE 707
                     F    +V E  +
Sbjct: 92  DLIIPDDLLKFDELYIVLEIAD 113

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A Length = 361

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 6/81 (7%)

Query: 632 IGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
           IG+G  G         + E+VAVK     I      D+     E+     +RH NIV+F 
Sbjct: 28  IGSGNFGVARLMRDKLTKELVAVK----YIERGAAIDENVQ-REIINHRSLRHPNIVRFK 82

Query: 691 GFCSHAQHSFLVYEFLERGSL 711
                  H  ++ E+   G L
Sbjct: 83  EVILTPTHLAIIMEYASGGEL 103

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} Length = 320

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 5/60 (8%)

Query: 632 IGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
           +G GG+G V+ A +    + VA+KK    I        K  L E++ +  + H NIVK +
Sbjct: 19  LGCGGNGLVFSAVDNDCDKRVAIKK----IVLTDPQSVKHALREIKIIRRLDHDNIVKVF 74

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B Length = 326

 Score = 42.2 bits (100), Expect = 4e-04
 Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 22/91 (24%)

Query: 632 IGNGGHGSVYRA--ELPSGEVVAVKKFHSSIPCDQIADQKE-----FLTEVQALTEIR-- 682
           IG G +G V++A      G  VA+K+         +   +E      + EV  L  +   
Sbjct: 19  IGEGAYGKVFKARDLKNGGRFVALKRVR-------VQTGEEGMPLSTIREVAVLRHLETF 71

Query: 683 -HRNIVK----FYGFCSHAQHS-FLVYEFLE 707
            H N+V+         +  +    LV+E ++
Sbjct: 72  EHPNVVRLFDVCTVSRTDRETKLTLVFEHVD 102

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3o71_A 3r63_A 3c9w_A* 2y9q_A* 3sa0_A* 1wzy_A* 2e14_A* 1tvo_A* 2ojg_A* 2oji_A* ... Length = 364

 Score = 42.3 bits (100), Expect = 5e-04
 Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 9/82 (10%)

Query: 632 IGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
           IG G +G V  A +  +   VA+KK     P +     +  L E++ L   RH NI+   
Sbjct: 35  IGEGAYGMVCSAYDNLNKVRVAIKKIS---PFEHQTYCQRTLREIKILLRFRHENIIGIN 91

Query: 691 G-FCSHAQHSF----LVYEFLE 707
               +          +V + +E
Sbjct: 92  DIIRAPTIEQMKDVYIVQDLME 113

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 40.7 bits (96), Expect = 5e-04
 Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 10/94 (10%)

Query: 348 GIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEI-GSLIE 406
           GIP      +  Q L L  N I    P    +L  LT+L L  NQLT  LP  +   L +
Sbjct: 27  GIP------TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQ 79

Query: 407 LEYLDFSANKFNNSVPE-SLGNLLKLHYLGLSNN 439
           L  L  + N+   S+P  +  NL  L ++ L NN
Sbjct: 80  LTQLSLNDNQL-KSIPRGAFDNLKSLTHIWLLNN 112

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score = 42.1 bits (99), Expect = 5e-04
 Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 12/86 (13%)

Query: 632 IGNGGHGSVYRAE-LPSGEVVAVK-----KFHSSIPCDQIADQKEFLTEVQALTEIRHRN 685
           +G G  G V   +   +G  VAVK     K  S     +I        E+Q L   RH +
Sbjct: 24  LGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIR------REIQNLKLFRHPH 77

Query: 686 IVKFYGFCSHAQHSFLVYEFLERGSL 711
           I+K Y   S     F+V E++  G L
Sbjct: 78  IIKLYQVISTPSDIFMVMEYVSGGEL 103

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score = 41.4 bits (98), Expect = 5e-04
 Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 12/86 (13%)

Query: 632 IGNGGHGSVYRAE-LPSGEVVAVK-----KFHSSIPCDQIADQKEFLTEVQALTEIRHRN 685
           +G G  G V   E   +G  VAVK     K  S     +I        E+Q L   RH +
Sbjct: 19  LGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIK------REIQNLKLFRHPH 72

Query: 686 IVKFYGFCSHAQHSFLVYEFLERGSL 711
           I+K Y   S     F+V E++  G L
Sbjct: 73  IIKLYQVISTPTDFFMVMEYVSGGEL 98

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* Length = 353

 Score = 41.8 bits (99), Expect = 5e-04
 Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 10/91 (10%)

Query: 632 IGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
           +G G +G V  A   P+GE+VA+KK     P D+       L E++ L   +H NI+  +
Sbjct: 19  LGEGAYGVVCSATHKPTGEIVAIKKIE---PFDKPLFALRTLREIKILKHFKHENIITIF 75

Query: 691 G-FCSHAQHSF----LVYEFLERGSLAAILS 716
                 +  +F    ++ E ++   L  ++S
Sbjct: 76  NIQRPDSFENFNEVYIIQELMQT-DLHRVIS 105

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3mb7_A* 3mb6_A* 3owj_A* 3owk_A* ... Length = 330

 Score = 41.5 bits (98), Expect = 6e-04
 Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 13/81 (16%)

Query: 632 IGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR-HRNIVKF 689
           +G G +  V+ A  + + E V VK             +K+   E++ L  +R   NI+  
Sbjct: 44  LGRGKYSEVFEAINITNNEKVVVKILKP-------VKKKKIKREIKILENLRGGPNIITL 96

Query: 690 YGFCSHAQHSF---LVYEFLE 707
                    S    LV+E + 
Sbjct: 97  AD-IVKDPVSRTPALVFEHVN 116

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 39.9 bits (94), Expect = 7e-04
 Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 10/94 (10%)

Query: 348 GIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEI-GSLIE 406
           GIP      +  Q L L+ N I    P     L +L +L    N+LT  +PT +   L +
Sbjct: 30  GIP------TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQ 82

Query: 407 LEYLDFSANKFNNSVPE-SLGNLLKLHYLGLSNN 439
           L  LD + N    S+P  +  NL  L ++ L NN
Sbjct: 83  LTQLDLNDNHL-KSIPRGAFDNLKSLTHIYLYNN 115

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	716
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.98
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.98
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.95
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.92
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.91
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.9
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.89
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.89
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.89
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.89
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.89
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.88
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.88
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.88
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.87
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.85
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.85
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.84
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.83
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.81
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.81
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.81
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.81
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.81
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.79
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.79
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.79
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.79
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.79
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.79
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.78
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.78
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.78
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.77
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.75
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.74
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.74
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.73
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.72
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.72
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.71
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.71
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.7
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.69
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.69
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.67
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.66
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	99.66
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.66
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.66
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.66
4aoj_A	329	High affinity nerve growth factor receptor; transf	99.66
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	99.65
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.65
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.64
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.63
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.62
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	99.61
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.59
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.58
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	99.58
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.58
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.55
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	99.54
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.54
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.53
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.53
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	99.52
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	99.51
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	99.51
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.5
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	99.5
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	99.49
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	99.49
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.48
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.47
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.47
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.45
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.44
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.38
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.38
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	99.36
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.36
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	99.34
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.33
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.32
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	99.31
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	99.31
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	99.31
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	99.3
3uqc_A	286	Probable conserved transmembrane protein; structur	99.28
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	99.28
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.27
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	99.26
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	99.25
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.24
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	99.23
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	99.23
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	99.23
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	99.23
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	99.23
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	99.22
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	99.22
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.22
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	99.22
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	99.22
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	99.22
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	99.21
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	99.21
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	99.21
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	99.2
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	99.2
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.2
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	99.19
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	99.19
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	99.19
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	99.19
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.19
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	99.19
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.18
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	99.18
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	99.18
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	99.18
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	99.17
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	99.17
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	99.17
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	99.17
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	99.17
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	99.17
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	99.17
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	99.16
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	99.16
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.16
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	99.16
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	99.16
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.15
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	99.15
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	99.15
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	99.15
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	99.15
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	99.15
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	99.15
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	99.15
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	99.14
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	99.14
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	99.14
3soc_A	322	Activin receptor type-2A; structural genomics cons	99.14
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	99.14
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	99.14
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	99.14
3ork_A	311	Serine/threonine protein kinase; structural genomi	99.13
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	99.13
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	99.13
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	99.13
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	99.12
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	99.12
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	99.12
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	99.12
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	99.12
3niz_A	311	Rhodanese family protein; structural genomics, str	99.12
3bhy_A	283	Death-associated protein kinase 3; death associate	99.12
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	99.12
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	99.12
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.12
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	99.12
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	99.11
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	99.11
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	99.11
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	99.11
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	99.11
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	99.11
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	99.11
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	99.11
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	99.1
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	99.1
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	99.1
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	99.1
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	99.1
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	99.1
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	99.1
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	99.1
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	99.1
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	99.09
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	99.09
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.09
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	99.09
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	99.09
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	99.09
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	99.09
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	99.09
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	99.09
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	99.09
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	99.08
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	99.08
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	99.08
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	99.08
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	99.08
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	99.08
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	99.08
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	99.07
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	99.07
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	99.07
3q4u_A	301	Activin receptor type-1; structural genomics conso	99.07
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	99.07
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	99.07
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	99.07
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	99.07
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	99.07
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	99.07
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	99.07
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	99.07
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.07
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.06
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	99.06
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	99.06
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.06
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	99.06
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	99.05
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	99.05
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	99.05
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	99.05
3o0g_A	292	Cell division protein kinase 5; kinase activator c	99.05
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	99.05
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	99.04
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	99.04
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	99.03
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	99.03
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	99.03
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	99.03
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	99.02
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	99.02
2a19_B	284	Interferon-induced, double-stranded RNA-activated	99.02
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	99.02
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	99.02
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	99.02
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	99.02
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	99.01
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	99.01
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	99.01
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.01
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	99.01
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	99.0
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.0
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	99.0
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	99.0
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	99.0
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	98.99
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	98.98
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	98.98
3pls_A	298	Macrophage-stimulating protein receptor; protein k	98.98
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	98.98
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	98.98
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	98.97
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	98.97
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	98.96
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	98.96
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	98.96
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	98.96
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	98.96
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	98.96
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	98.95
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	98.95
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	98.95
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	98.95
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	98.95
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	98.94
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	98.94
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.94
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.92
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	98.92
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	98.92
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	98.91
3an0_A	340	Dual specificity mitogen-activated protein kinase;	98.91
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	98.91
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	98.91
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	98.91
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	98.91
3rp9_A	458	Mitogen-activated protein kinase; structural genom	98.9
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	98.9
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	98.9
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	98.9
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	98.9
3fme_A	290	Dual specificity mitogen-activated protein kinase;	98.9
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	98.89
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	98.89
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	98.88
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.88
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	98.87
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	98.87
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	98.87
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	98.86
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	98.86
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	98.85
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	98.85
3aln_A	327	Dual specificity mitogen-activated protein kinase;	98.85
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	98.85
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	98.84
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	98.84
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	98.84
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	98.83
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.82
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	98.81
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	98.81
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	98.8
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	98.79
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	98.79
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	98.79
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	98.78
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	98.78
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	98.76
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	98.74
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	98.73
2dyl_A	318	Dual specificity mitogen-activated protein kinase	98.71
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	98.71
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	98.7
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	98.69
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	98.69
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	98.69
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	98.68
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	98.68
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	98.67
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	98.64
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	98.62
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	98.61
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	98.55
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	98.49
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	98.49
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.43
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.39
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.33
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	98.05
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	97.93
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.84
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	97.84
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.76
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.07
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	97.06
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.05
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.99
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	96.79
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	96.71
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.45
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	94.24
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	92.43
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	92.32
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	90.15
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	90.05
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	89.86
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	87.3
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	85.39

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3.4e-71  Score=643.81  Aligned_cols=534  Identities=32%  Similarity=0.518  Sum_probs=429.3

Q ss_pred             hHHHHHHHHHHhhcccCCCCCCCCCcCCCCCCCCCCCCcceeeeeeCCCCCEEEEEcCCCCCccc---cCC---------
Q 041300            2 NEEADALLKWKASLQSHNQSLLPSWTNASTNVSSKISPCAWYGISCNDAGRVTNISLRNTGLSGT---LRD---------   69 (716)
Q Consensus         2 ~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~c~w~gv~c~~~~~v~~l~l~~~~l~~~---~~~---------   69 (716)
                      ++|++||++||+++ .||. .+.+|..++       +||.|.||+|+ .|+|+.|+|+++++.|.   +++         
T Consensus        11 ~~~~~all~~k~~~-~~~~-~l~~W~~~~-------~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~   80 (768)
T 3rgz_A           11 YREIHQLISFKDVL-PDKN-LLPDWSSNK-------NPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLE   80 (768)
T ss_dssp             HHHHHHHHHHHTTC-SCTT-SSTTCCTTS-------CGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCC
T ss_pred             HHHHHHHHHHHhhC-CCcc-cccCCCCCC-------CCcCCcceEEC-CCcEEEEECCCCCcCCccCccChhHhccCccc
Confidence            57999999999999 5776 889996555       89999999998 79999999999999886   322         


Q ss_pred             -------------CCCCCCCCCcEEECCCCCccccCcc--cccCCCCCCEEECcCCcCcccCCccc-cCC----------
Q 041300           70 -------------FSFSSFPQLVHLDLSLNGFFGTIPS--QIGNLTKLSYISLDSNQLSGKIPAEV-GLL----------  123 (716)
Q Consensus        70 -------------~~f~~l~~L~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l----------  123 (716)
                                   ..|..+++|++|||++|.+.+.+|.  .++++++|++|+|++|.+.+.+|..+ ..+          
T Consensus        81 ~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~  160 (768)
T 3rgz_A           81 SLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA  160 (768)
T ss_dssp             EEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCS
T ss_pred             ccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCC
Confidence                         4688889999999999999888877  78888888888888777765555433 233          


Q ss_pred             ---------------------------------------CCCCEEEcccccCccCCCccccCCCCCceeecccccccCCC
Q 041300          124 ---------------------------------------THLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSL  164 (716)
Q Consensus       124 ---------------------------------------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  164 (716)
                                                             ++|++|+|++|.+.+.+|. +..+++|++|+|++|.+++..
T Consensus       161 n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~  239 (768)
T 3rgz_A          161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDF  239 (768)
T ss_dssp             SCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCH
T ss_pred             CccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcc
Confidence                                                   3333444444444433333 555556666666666665555


Q ss_pred             CccccCCcCCcEEEeeccccc----------------------ccccccccCC-CCCceeeCCC------CCcc------
Q 041300          165 PPFLGNLSNIVRLYINNNSLS----------------------GSILTNIGNL-KFLFELDLSF------LPLS------  209 (716)
Q Consensus       165 p~~~~~l~~L~~L~L~~n~l~----------------------~~~~~~l~~l-~~L~~L~l~~------~~~~------  209 (716)
                      |..|.++++|++|++++|.++                      +.+|..+..+ +.|+.|+++.      .|..      
T Consensus       240 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~  319 (768)
T 3rgz_A          240 SRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL  319 (768)
T ss_dssp             HHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTT
T ss_pred             cHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCC
Confidence            555555555444444444433                      2333333332 5555555543      2333      


Q ss_pred             -------------------cCCCCccCEEEeeCCcCcccCCCccccc--cccEEEccCCcCccccCccccC--CCCccEE
Q 041300          210 -------------------VGNLTNLKSLGLMDNHLSGSIPPSFGNS--MLTWLTLSGNHFTGYLPHNICR--GGLLEAF  266 (716)
Q Consensus       210 -------------------~~~l~~L~~L~l~~n~l~~~~~~~~~~~--~L~~L~L~~n~l~~~~~~~~~~--~~~L~~L  266 (716)
                                         +.++++|++|++++|.+.+.+|..+...  .|++|++++|.+++..|..++.  .+.|+.|
T Consensus       320 L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L  399 (768)
T 3rgz_A          320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL  399 (768)
T ss_dssp             CCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEE
T ss_pred             ccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEE
Confidence                               4445555555555555555555544332  5677777777776666666655  6778899


Q ss_pred             EecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCc
Q 041300          267 IVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNIT  346 (716)
Q Consensus       267 ~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  346 (716)
                      ++++|.+++.+|..+.++++|+.|++++|++++..|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|+++
T Consensus       400 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~  479 (768)
T 3rgz_A          400 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT  479 (768)
T ss_dssp             ECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             ECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCccc
Confidence            99999998899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhh-
Q 041300          347 GGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESL-  425 (716)
Q Consensus       347 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-  425 (716)
                      +.+|..+..+++|++|++++|++++.+|.++..+++|+.|++++|++++.+|..+..+++|+.|++++|.+++.+|..+ 
T Consensus       480 ~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~  559 (768)
T 3rgz_A          480 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF  559 (768)
T ss_dssp             SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGG
T ss_pred             CcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999987777543 


Q ss_pred             ---------------------------------------------------------------------cCcCCCCEEEC
Q 041300          426 ---------------------------------------------------------------------GNLLKLHYLGL  436 (716)
Q Consensus       426 ---------------------------------------------------------------------~~l~~L~~L~L  436 (716)
                                                                                           ..+++|+.|+|
T Consensus       560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdL  639 (768)
T 3rgz_A          560 KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM  639 (768)
T ss_dssp             TTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEEC
T ss_pred             cccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEEC
Confidence                                                                                 33567999999


Q ss_pred             cCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCccccc
Q 041300          437 SNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGP  516 (716)
Q Consensus       437 s~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~  516 (716)
                      ++|++++.+|..++.++.|+.|+|++|+++|.+|..++.+++|+.|||++|++++.+|..+..+++|++||+++|+++|.
T Consensus       640 s~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~  719 (768)
T 3rgz_A          640 SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGP  719 (768)
T ss_dssp             CSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEE
T ss_pred             cCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccccCCCCcccccCCCCCCCCCCCCCCCc
Q 041300          517 VPNSTAFRNAPVEALEGNKELCGGVKGMQPCK  548 (716)
Q Consensus       517 ~p~~~~~~~~~~~~~~~n~~~c~~~~~~~~~~  548 (716)
                      +|...++..++...+.||+.+||.+..  +|.
T Consensus       720 iP~~~~~~~~~~~~~~gN~~Lcg~~l~--~C~  749 (768)
T 3rgz_A          720 IPEMGQFETFPPAKFLNNPGLCGYPLP--RCD  749 (768)
T ss_dssp             CCSSSSGGGSCGGGGCSCTEEESTTSC--CCC
T ss_pred             CCCchhhccCCHHHhcCCchhcCCCCc--CCC
Confidence            999999999999999999999997643  775

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=4.3e-57  Score=525.33  Aligned_cols=460  Identities=33%  Similarity=0.489  Sum_probs=412.9

Q ss_pred             CCEEEEEcCCCCCccccCCCCCCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEE
Q 041300           51 GRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLS  130 (716)
Q Consensus        51 ~~v~~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  130 (716)
                      ..++.|++++|.+.+.++.  |..+++|++|+|++|.+.+..|..|.++++|++|+|++|.+.+.+|..  .+++|++|+
T Consensus       200 ~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~  275 (768)
T 3rgz_A          200 VNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLS  275 (768)
T ss_dssp             TTCCEEECCSSCCCSCCCB--CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEE
T ss_pred             CcCCEEECcCCcCCCCCcc--cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEE
Confidence            3577788888887765532  788888888888888888888888888888888888888888777765  788888888


Q ss_pred             cccccCccCCCccccCC-CCCceeecccccccCCCCccccCCcCCcEEEeeccccccccccc-ccCCCCCceeeCCC---
Q 041300          131 FQFNELDGSIPPEVCQL-SSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTN-IGNLKFLFELDLSF---  205 (716)
Q Consensus       131 L~~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~---  205 (716)
                      +++|.+++.+|..+..+ ++|++|+|++|.+++..|..|+++++|++|++++|.+++.+|.. +..++.|++|+++.   
T Consensus       276 L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l  355 (768)
T 3rgz_A          276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF  355 (768)
T ss_dssp             CCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEE
T ss_pred             CcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCcc
Confidence            88888888888888775 99999999999999999999999999999999999999888866 99999999999976   


Q ss_pred             ---CCcccCCCC-ccCEEEeeCCcCcccCCCcccc---ccccEEEccCCcCccccCccccCCCCccEEEecCCcccccCC
Q 041300          206 ---LPLSVGNLT-NLKSLGLMDNHLSGSIPPSFGN---SMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIP  278 (716)
Q Consensus       206 ---~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~---~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p  278 (716)
                         .|..+.+++ +|++|++++|.+.+.+|..+..   ..|++|++++|.+++..|..+..++.|+.|++++|++++.+|
T Consensus       356 ~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  435 (768)
T 3rgz_A          356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP  435 (768)
T ss_dssp             EECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCC
T ss_pred             CccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCccc
Confidence               455666776 9999999999999888887754   479999999999999999999999999999999999999999


Q ss_pred             cccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCC
Q 041300          279 ESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQ  358 (716)
Q Consensus       279 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  358 (716)
                      ..+.++++|+.|++++|.+++..|..+..+++|++|++++|.+++.+|..+..+++|+.|++++|++++.+|.+++.+++
T Consensus       436 ~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~  515 (768)
T 3rgz_A          436 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN  515 (768)
T ss_dssp             GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred             HHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCccc-------------------------------------
Q 041300          359 LQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEI-------------------------------------  401 (716)
Q Consensus       359 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-------------------------------------  401 (716)
                      |++|++++|++++.+|..+..+++|+.|++++|++++.+|..+                                     
T Consensus       516 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  595 (768)
T 3rgz_A          516 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLE  595 (768)
T ss_dssp             CCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEE
T ss_pred             CCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccc
Confidence            9999999999999999999999999999999999987777543                                     


Q ss_pred             ---------------------------------CCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChh
Q 041300          402 ---------------------------------GSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKE  448 (716)
Q Consensus       402 ---------------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  448 (716)
                                                       ..+++|+.|||++|++++.+|..+++++.|+.|+|++|++++.+|..
T Consensus       596 ~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~  675 (768)
T 3rgz_A          596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE  675 (768)
T ss_dssp             CTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred             cccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChH
Confidence                                             33577999999999999999999999999999999999999999999


Q ss_pred             hhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCc-ccc
Q 041300          449 LEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQ-LQG  515 (716)
Q Consensus       449 ~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~-l~~  515 (716)
                      ++.+++|+.|||++|+++|.+|..+..+++|++|++++|+++|.+|.. ..+.++....+.+|+ ++|
T Consensus       676 l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg  742 (768)
T 3rgz_A          676 VGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCG  742 (768)
T ss_dssp             GGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEES
T ss_pred             HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcC
Confidence            999999999999999999999999999999999999999999999964 234455556677887 444

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=2.4e-54  Score=491.19  Aligned_cols=486  Identities=19%  Similarity=0.198  Sum_probs=417.3

Q ss_pred             CCEEEEEcCCCCCccccCCCCCCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEE
Q 041300           51 GRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLS  130 (716)
Q Consensus        51 ~~v~~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  130 (716)
                      ..++.|++++|.+.+ +.+.+|..+++|++|+|++|.+.++.|.+|.++++|++|+|++|.+++..|..|+.+++|++|+
T Consensus        33 ~~l~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  111 (606)
T 3t6q_A           33 NSTECLEFSFNVLPT-IQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF  111 (606)
T ss_dssp             TTCCEEECTTCCCSE-ECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred             CcCcEEEccCCccCc-CChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence            368999999999984 5577899999999999999999999999999999999999999999988899999999999999


Q ss_pred             cccccCccCCCccccCCCCCceeecccccccCCCCccccCCcCCcEEEeecccccccccccccCCCCCc--eeeCCCC--
Q 041300          131 FQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLF--ELDLSFL--  206 (716)
Q Consensus       131 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~--~L~l~~~--  206 (716)
                      +++|.+++..+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..++.|+  .++++..  
T Consensus       112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l  191 (606)
T 3t6q_A          112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI  191 (606)
T ss_dssp             CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred             ccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCcc
Confidence            999999987788899999999999999999986655666699999999999999988888899999998  7777653  


Q ss_pred             ---CcccCCCCccCEEEeeCCcCc--------------------------ccCCCcc---ccccccEEEccCCcCccccC
Q 041300          207 ---PLSVGNLTNLKSLGLMDNHLS--------------------------GSIPPSF---GNSMLTWLTLSGNHFTGYLP  254 (716)
Q Consensus       207 ---~~~~~~l~~L~~L~l~~n~l~--------------------------~~~~~~~---~~~~L~~L~L~~n~l~~~~~  254 (716)
                         +.......+|+.|++++|...                          ...+..+   ....++.|++++|.+++..+
T Consensus       192 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~  271 (606)
T 3t6q_A          192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS  271 (606)
T ss_dssp             CEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCT
T ss_pred             CccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCH
Confidence               223344567888888776410                          0011111   12268999999999998888


Q ss_pred             ccccCCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCC-CCCCCC
Q 041300          255 HNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISS-NWGKCP  333 (716)
Q Consensus       255 ~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~~l~  333 (716)
                      ..|..++.|+.|++++|.++ .+|..+.++++|++|++++|.+++..+..+..+++|++|++++|.+.+.++. .+..++
T Consensus       272 ~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~  350 (606)
T 3t6q_A          272 NTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE  350 (606)
T ss_dssp             TTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT
T ss_pred             HHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccC
Confidence            88999999999999999998 6778889999999999999999988888899999999999999998866554 488899


Q ss_pred             CCCEEEcccCcCcccC--cccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcc-cCCCCCCCEE
Q 041300          334 KLGTLNVSMNNITGGI--PREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTE-IGSLIELEYL  410 (716)
Q Consensus       334 ~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L  410 (716)
                      +|++|++++|.+++..  +..+..+++|++|++++|.+.+..|..+..+++|+.|++++|++++..+.. +..+++|+.|
T Consensus       351 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  430 (606)
T 3t6q_A          351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL  430 (606)
T ss_dssp             TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEE
T ss_pred             cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEE
Confidence            9999999999998765  778899999999999999999888889999999999999999998776554 8889999999


Q ss_pred             EccCCcCCccCchhhcCcCCCCEEECcCCcCccc---CChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCC
Q 041300          411 DFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLE---LPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHN  487 (716)
Q Consensus       411 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N  487 (716)
                      ++++|.+.+..|..+..+++|++|++++|++.+.   .+..+..+++|++|++++|.+++..|..+..+++|+.|++++|
T Consensus       431 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  510 (606)
T 3t6q_A          431 NLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN  510 (606)
T ss_dssp             ECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             ECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCC
Confidence            9999999988888899999999999999999763   3356888999999999999999888999999999999999999


Q ss_pred             cCcccCCcCCcCCCCCCEEEccCCcccccCCCc-cccCCCCcccccCCCCCCC
Q 041300          488 NLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNS-TAFRNAPVEALEGNKELCG  539 (716)
Q Consensus       488 ~l~~~~~~~~~~~~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~~c~  539 (716)
                      ++++..|..|..++.| .|++++|++++.+|.. ..+.......+.+|++.|.
T Consensus       511 ~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  562 (606)
T 3t6q_A          511 RLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT  562 (606)
T ss_dssp             CCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECS
T ss_pred             ccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcccc
Confidence            9999999999999999 9999999999877653 4455667777889998884

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.3e-54  Score=493.23  Aligned_cols=476  Identities=20%  Similarity=0.211  Sum_probs=412.7

Q ss_pred             EEEcCCCCCccccCCCCCCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcccc
Q 041300           55 NISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFN  134 (716)
Q Consensus        55 ~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N  134 (716)
                      .++.++.++. .++. .+.  +.+++|||++|.+.++.|.+|.++++|++|+|++|.+.+..|.+|+.+++|++|+|++|
T Consensus        16 ~~~c~~~~l~-~iP~-~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n   91 (606)
T 3t6q_A           16 TYNCENLGLN-EIPG-TLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN   91 (606)
T ss_dssp             EEECTTSCCS-SCCT-TSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             eEECCCCCcc-cCcC-CCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC
Confidence            3455555555 3422 232  37999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCccCCCccccCCCCCceeecccccccCCCCccccCCcCCcEEEeecccccccccccccCCCCCceeeCCCC------Cc
Q 041300          135 ELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFL------PL  208 (716)
Q Consensus       135 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~~------~~  208 (716)
                      .+.+..|..|.++++|++|++++|.+++..|..|+++++|++|++++|.+++.....+..++.|+.|+++..      |.
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  171 (606)
T 3t6q_A           92 PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE  171 (606)
T ss_dssp             CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHH
T ss_pred             cccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChh
Confidence            999999999999999999999999999888889999999999999999999866566666999999999874      34


Q ss_pred             ccCCCCccC--EEEeeCCcCcccCCCccccccccEEEccCCcCcc--------------------------ccCccccCC
Q 041300          209 SVGNLTNLK--SLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTG--------------------------YLPHNICRG  260 (716)
Q Consensus       209 ~~~~l~~L~--~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~--------------------------~~~~~~~~~  260 (716)
                      .+..+++|+  .|++++|.+.+..|..+....|+.|++++|....                          ..+..+..+
T Consensus       172 ~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l  251 (606)
T 3t6q_A          172 DMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL  251 (606)
T ss_dssp             HHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGG
T ss_pred             hhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchh
Confidence            577889999  8999999999999998888899999999875110                          011112222


Q ss_pred             --CCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEE
Q 041300          261 --GLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTL  338 (716)
Q Consensus       261 --~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  338 (716)
                        ..++.+++++|.+.+..+..|.++++|+.|++++|.++ .+|..+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus       252 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  330 (606)
T 3t6q_A          252 CEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHL  330 (606)
T ss_dssp             GGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEE
T ss_pred             hcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEE
Confidence              16899999999999999999999999999999999999 566778999999999999999999888899999999999


Q ss_pred             EcccCcCcccCcc-cccCCCCCCEEEccCCcccccc--CcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCC
Q 041300          339 NVSMNNITGGIPR-EIGNMSQLQALDLSLNHIVGEI--PKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSAN  415 (716)
Q Consensus       339 ~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N  415 (716)
                      ++++|.+.+.+|. .+..+++|++|++++|.+++..  +..+..+++|+.|++++|++++..|..+..+++|+.|++++|
T Consensus       331 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  410 (606)
T 3t6q_A          331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT  410 (606)
T ss_dssp             ECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTC
T ss_pred             ECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCC
Confidence            9999999866554 5899999999999999999766  778999999999999999999988999999999999999999


Q ss_pred             cCCccCch-hhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccc---cchhccCCCCCCEEECcCCcCcc
Q 041300          416 KFNNSVPE-SLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGE---IPFQICSLKSLEKLNLSHNNLSG  491 (716)
Q Consensus       416 ~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~---~p~~~~~l~~L~~L~ls~N~l~~  491 (716)
                      .+.+..+. .+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+.   .+..+..+++|+.|++++|++++
T Consensus       411 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~  490 (606)
T 3t6q_A          411 RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS  490 (606)
T ss_dssp             CEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCE
T ss_pred             cCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCc
Confidence            99877654 489999999999999999988899999999999999999999873   23568899999999999999999


Q ss_pred             cCCcCCcCCCCCCEEEccCCcccccCCCc-cccCCCCcccccCCCC
Q 041300          492 LIPNCFEGMHGLSIIDISDNQLQGPVPNS-TAFRNAPVEALEGNKE  536 (716)
Q Consensus       492 ~~~~~~~~~~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~  536 (716)
                      ..|..|..+++|+.|++++|++++..|.. ...... ...+.+|..
T Consensus       491 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l  535 (606)
T 3t6q_A          491 IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHI  535 (606)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCC
T ss_pred             cChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcc
Confidence            99999999999999999999999876643 223333 344455543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.1e-53  Score=492.39  Aligned_cols=489  Identities=23%  Similarity=0.246  Sum_probs=360.5

Q ss_pred             CCEEEEEcCCCCCccccCCCCCCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEE
Q 041300           51 GRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLS  130 (716)
Q Consensus        51 ~~v~~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  130 (716)
                      .+++.|++++|++.+ +++..|..+++|++|||++|.+.+..|..|.++++|++|+|++|.+++..+..|+.+++|++|+
T Consensus        25 ~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  103 (680)
T 1ziw_A           25 TNITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH  103 (680)
T ss_dssp             TTCSEEECCSSCCCC-CCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred             CCCcEEECCCCCCCC-cCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence            478999999999885 4466799999999999999999998899999999999999999999976666899999999999


Q ss_pred             cccccCccCCCccccCCCCCceeecccccccCCCCccccCCcCCcEEEeeccccccccccccc--CCCCCceeeCCCC--
Q 041300          131 FQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIG--NLKFLFELDLSFL--  206 (716)
Q Consensus       131 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~l~~~--  206 (716)
                      |++|.+.+..|..|.++++|++|+|++|.+++..|..|.++++|++|++++|.+++..+..+.  .++.|+.|+++..  
T Consensus       104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l  183 (680)
T 1ziw_A          104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI  183 (680)
T ss_dssp             CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred             CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence            999999988888899999999999999999988888999999999999999998877666544  4577888887653  


Q ss_pred             ----CcccCC---------------------------CCccCEEEeeCCcCcccCCCccccc---cccEEEccCCcCccc
Q 041300          207 ----PLSVGN---------------------------LTNLKSLGLMDNHLSGSIPPSFGNS---MLTWLTLSGNHFTGY  252 (716)
Q Consensus       207 ----~~~~~~---------------------------l~~L~~L~l~~n~l~~~~~~~~~~~---~L~~L~L~~n~l~~~  252 (716)
                          |..+..                           .++|+.|++++|.+.+..|..+...   +|+.|++++|.+++.
T Consensus       184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~  263 (680)
T 1ziw_A          184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV  263 (680)
T ss_dssp             CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE
T ss_pred             cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc
Confidence                222222                           2456677777777776666666542   377777777777777


Q ss_pred             cCccccCCCCccEEEecCCcccccCCcccc---------------------------------cCCCCcEEEccCCcCCC
Q 041300          253 LPHNICRGGLLEAFIVSENHFQGTIPESLR---------------------------------NCTSLIRVRLNGNNLTG  299 (716)
Q Consensus       253 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~---------------------------------~l~~L~~L~l~~n~l~~  299 (716)
                      .+..+..++.|+.|++++|.+.+..|..|.                                 .+++|+.|++++|.+++
T Consensus       264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~  343 (680)
T 1ziw_A          264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG  343 (680)
T ss_dssp             CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred             CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC
Confidence            777777777777777777777666554444                                 44555555555566665


Q ss_pred             ccchhhCCCCCCCEEEccCC----------------------------ccccccCCCCCCCCCCCEEEcccCcCcccCc-
Q 041300          300 NISEALGLYPNLTFIDLSRN----------------------------NFYGEISSNWGKCPKLGTLNVSMNNITGGIP-  350 (716)
Q Consensus       300 ~~~~~~~~~~~L~~L~Ls~n----------------------------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-  350 (716)
                      ..+..|..+++|++|++++|                            ++++..+..|..+++|+.|++++|.+++.+| 
T Consensus       344 ~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  423 (680)
T 1ziw_A          344 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG  423 (680)
T ss_dssp             CCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCS
T ss_pred             CChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCc
Confidence            55555555555555554443                            3333344445555555555555555544333 


Q ss_pred             ccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCccc--ccCCcccCCCCCCCEEEccCCcCCccCchhhcCc
Q 041300          351 REIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLT--GRLPTEIGSLIELEYLDFSANKFNNSVPESLGNL  428 (716)
Q Consensus       351 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  428 (716)
                      ..+.++++|++|++++|++.+..+..|..+++|+.|++++|.++  +..|..+..+++|+.|++++|.+++..+..|.++
T Consensus       424 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l  503 (680)
T 1ziw_A          424 QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL  503 (680)
T ss_dssp             GGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             ccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccc
Confidence            34555555555555555555555555555566666666666554  4566777888888888888888887777778888


Q ss_pred             CCCCEEECcCCcCcccCC--------hhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCCcCC
Q 041300          429 LKLHYLGLSNNQFVLELP--------KELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGM  500 (716)
Q Consensus       429 ~~L~~L~Ls~N~l~~~~~--------~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~  500 (716)
                      ++|++|++++|++++..+        ..+.++++|++|++++|+++...+..|.++++|+.|++++|+++++.+..|..+
T Consensus       504 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l  583 (680)
T 1ziw_A          504 EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQ  583 (680)
T ss_dssp             TTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             cccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCC
Confidence            888888888888875422        236778889999999998886555678889999999999999998888888889


Q ss_pred             CCCCEEEccCCcccccCCCcc--ccCCCCcccccCCCCCCCC
Q 041300          501 HGLSIIDISDNQLQGPVPNST--AFRNAPVEALEGNKELCGG  540 (716)
Q Consensus       501 ~~L~~l~ls~N~l~~~~p~~~--~~~~~~~~~~~~n~~~c~~  540 (716)
                      ++|+.|++++|++++..|...  .+.......+.+|++.|..
T Consensus       584 ~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c  625 (680)
T 1ziw_A          584 VSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC  625 (680)
T ss_dssp             TTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCC
T ss_pred             CCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCC
Confidence            999999999999988766432  4566777788999999964

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=3.1e-56  Score=506.33  Aligned_cols=475  Identities=20%  Similarity=0.253  Sum_probs=281.8

Q ss_pred             hHHHHHHHHHHhhcccCCCC-------CCCCCcCCCCCCCCCCCCcce---eeeeeCCCCCEEEEEcCCCCCccccCCCC
Q 041300            2 NEEADALLKWKASLQSHNQS-------LLPSWTNASTNVSSKISPCAW---YGISCNDAGRVTNISLRNTGLSGTLRDFS   71 (716)
Q Consensus         2 ~~~~~~l~~~~~~~~~~~~~-------~~~~w~~~~~~~~~~~~~c~w---~gv~c~~~~~v~~l~l~~~~l~~~~~~~~   71 (716)
                      ..|++||.+++++++.+.-.       ...+|...       .+||.|   .||+|+..|+|+.|+|+++++.|.++ .+
T Consensus        29 ~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~-------~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp-~~  100 (636)
T 4eco_A           29 IKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFN-------KELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVP-DA  100 (636)
T ss_dssp             HHHHHHHHHHHHHTTGGGCCCCC------CCCCCS-------SCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEEC-GG
T ss_pred             HHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCC-------CCcccccCCCCeEEcCCCCEEEEEecCcccCCcCC-hH
Confidence            36889999999998432211       11245433       389999   99999988999999999999999995 68


Q ss_pred             CCCCCCCcEEECCCCCc------cc------cCcccccCCCCCCEEECcCCcCcccCCccccCC----------------
Q 041300           72 FSSFPQLVHLDLSLNGF------FG------TIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLL----------------  123 (716)
Q Consensus        72 f~~l~~L~~L~Ls~n~i------~~------~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l----------------  123 (716)
                      |..++.|++|||++|.+      .+      .+|...  +..|+ +++++|.+.+.+|..+..+                
T Consensus       101 l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~  177 (636)
T 4eco_A          101 IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK  177 (636)
T ss_dssp             GGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCC
T ss_pred             HhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCcccccccc
Confidence            99999999999999976      22      122211  23333 4444444444443333210                


Q ss_pred             ---CCCCEEEcc--cccCccCCCccccCCCCCceeecccccccCC-----------------CCcccc--CCcCCcEEEe
Q 041300          124 ---THLKVLSFQ--FNELDGSIPPEVCQLSSIEELFLYSNHLNGS-----------------LPPFLG--NLSNIVRLYI  179 (716)
Q Consensus       124 ---~~L~~L~L~--~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-----------------~p~~~~--~l~~L~~L~L  179 (716)
                         ..++.+.+.  .|.+++ +|..|+++++|++|+|++|.+++.                 +|+.++  ++++|++|+|
T Consensus       178 ~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L  256 (636)
T 4eco_A          178 SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEV  256 (636)
T ss_dssp             CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEE
T ss_pred             ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEe
Confidence               011111111  344444 444455555555555555555443                 444444  5555555555


Q ss_pred             ecccccccccccccCCCCCceeeCCCCCcccCCCCccCEEEeeCCc-Ccc-cCCCcccc-------ccccEEEccCCcCc
Q 041300          180 NNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNH-LSG-SIPPSFGN-------SMLTWLTLSGNHFT  250 (716)
Q Consensus       180 ~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~~~~-------~~L~~L~L~~n~l~  250 (716)
                      ++|.+.+.+|..+.+                  +++|++|++++|. +++ .+|..++.       .+|++|++++|.++
T Consensus       257 ~~n~l~~~~p~~l~~------------------l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~  318 (636)
T 4eco_A          257 YNCPNLTKLPTFLKA------------------LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK  318 (636)
T ss_dssp             ECCTTCSSCCTTTTT------------------CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred             cCCcCCccChHHHhc------------------CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence            555544433333322                  2244444455554 444 44443332       34555555555555


Q ss_pred             cccCc--cccCCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCC-CCEEEccCCccccccCC
Q 041300          251 GYLPH--NICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPN-LTFIDLSRNNFYGEISS  327 (716)
Q Consensus       251 ~~~~~--~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-L~~L~Ls~n~l~~~~~~  327 (716)
                       .+|.  .+..++.|+.|++++|++.|.+| .+.++++|+.|++++|+++ .+|..+..+++ |++|++++|.++ .+|.
T Consensus       319 -~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~  394 (636)
T 4eco_A          319 -TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPN  394 (636)
T ss_dssp             -SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCS
T ss_pred             -ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccch
Confidence             4444  45555555555555555555555 5555566666666666655 44444555555 666666666665 4444


Q ss_pred             CCCCCC--CCCEEEcccCcCcccCccccc-------CCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCC
Q 041300          328 NWGKCP--KLGTLNVSMNNITGGIPREIG-------NMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLP  398 (716)
Q Consensus       328 ~~~~l~--~L~~L~L~~n~l~~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  398 (716)
                      .+..++  +|+.|++++|.+++..|..+.       .+++|++|++++|+++...+..+..+++|+.|+|++|+++ .+|
T Consensus       395 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~  473 (636)
T 4eco_A          395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIP  473 (636)
T ss_dssp             CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCC
T ss_pred             hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcC
Confidence            444433  566666666666665555555       5556666666666666332333444666666666666666 333


Q ss_pred             ccc-CCC-------CCCCEEEccCCcCCccCchhhc--CcCCCCEEECcCCcCcccCChhhhCCCCCCEEEC------CC
Q 041300          399 TEI-GSL-------IELEYLDFSANKFNNSVPESLG--NLLKLHYLGLSNNQFVLELPKELEKLVQLSELDA------SH  462 (716)
Q Consensus       399 ~~~-~~l-------~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l------s~  462 (716)
                      ..+ ...       ++|+.|+|++|.++ .+|..+.  .+++|+.|+|++|++++ +|..+..+++|++|++      ++
T Consensus       474 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~  551 (636)
T 4eco_A          474 KNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQG  551 (636)
T ss_dssp             SSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTC
T ss_pred             HHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCccccc
Confidence            322 222       26666666666666 4555554  66666666666666665 5666666666777666      56


Q ss_pred             CcCccccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCccccc
Q 041300          463 NLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGP  516 (716)
Q Consensus       463 N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~  516 (716)
                      |++.+.+|..+..+++|+.|++++|++ +.+|..+.  ++|+.||+++|++...
T Consensus       552 N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~  602 (636)
T 4eco_A          552 NRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISI  602 (636)
T ss_dssp             CBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred             CcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCccc
Confidence            778888888888888899999999988 45666554  7888999999987653

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2.6e-53  Score=482.66  Aligned_cols=493  Identities=23%  Similarity=0.220  Sum_probs=406.2

Q ss_pred             CCccee----eeeeCC----------CCCEEEEEcCCCCCccccCCCCCCCCCCCcEEECCCCCccccCcccccCCCCCC
Q 041300           38 SPCAWY----GISCND----------AGRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLS  103 (716)
Q Consensus        38 ~~c~w~----gv~c~~----------~~~v~~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~  103 (716)
                      +||.|.    .|.|..          ..+++.|++++|.+.+ +.+..|..+++|++|||++|.+.++.|.+|.++++|+
T Consensus         5 ~~c~~~~~~~~~~c~~~~l~~ip~~~~~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~   83 (606)
T 3vq2_A            5 NPCIEVVPNITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKI-LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLS   83 (606)
T ss_dssp             -CCEEEETTTEEECTTSCCSSCCTTSCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred             CCceecCCCCceEccCCCcccCCCCCCCCcCEEECCCCCcCE-eChhhccCCccCcEEeCCCCcccccCHHHhhchhhcC
Confidence            577664    466753          2468999999999984 4467899999999999999999999999999999999


Q ss_pred             EEECcCCcCcccCCccccCCCCCCEEEcccccCccCCCccccCCCCCceeecccccccC-CCCccccCCcCCcEEEeecc
Q 041300          104 YISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNG-SLPPFLGNLSNIVRLYINNN  182 (716)
Q Consensus       104 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~n  182 (716)
                      +|+|++|.+++..|..|+++++|++|+|++|.+.+..+..|+++++|++|++++|.+++ .+|..|+++++|++|++++|
T Consensus        84 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n  163 (606)
T 3vq2_A           84 NLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN  163 (606)
T ss_dssp             EEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS
T ss_pred             EeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC
Confidence            99999999998889999999999999999999998888889999999999999999986 56999999999999999999


Q ss_pred             cccccccccccCCCCCc----eeeCCCCC-----cccCCCCccCEEEeeCCcCccc-CCCc-------------------
Q 041300          183 SLSGSILTNIGNLKFLF----ELDLSFLP-----LSVGNLTNLKSLGLMDNHLSGS-IPPS-------------------  233 (716)
Q Consensus       183 ~l~~~~~~~l~~l~~L~----~L~l~~~~-----~~~~~l~~L~~L~l~~n~l~~~-~~~~-------------------  233 (716)
                      .+++..+..+..+..|+    .++++...     .......+|+.|++++|.+.+. .|..                   
T Consensus       164 ~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~  243 (606)
T 3vq2_A          164 YIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD  243 (606)
T ss_dssp             CCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTT
T ss_pred             cceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhcccccccccccccccccc
Confidence            99988888787776654    68877633     3334444899999999877521 1111                   


Q ss_pred             --------------cccccccEEEc-cCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCC
Q 041300          234 --------------FGNSMLTWLTL-SGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLT  298 (716)
Q Consensus       234 --------------~~~~~L~~L~L-~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~  298 (716)
                                    .....++.+++ ..|.+.+..|. +..++.|+.+++++|.+.. +| .+..+++|+.|++++|.+ 
T Consensus       244 ~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-  319 (606)
T 3vq2_A          244 ERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-  319 (606)
T ss_dssp             SCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-
T ss_pred             CCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-
Confidence                          11123555555 66777777776 7788899999999999864 44 788889999999999999 


Q ss_pred             CccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCccc--CcccccCCCCCCEEEccCCccccccCcc
Q 041300          299 GNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGG--IPREIGNMSQLQALDLSLNHIVGEIPKE  376 (716)
Q Consensus       299 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~  376 (716)
                      +.+| .+ .+++|++|++++|...+..  .+..+++|++|++++|++++.  .|..+..+++|++|++++|.+++ +|..
T Consensus       320 ~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~  394 (606)
T 3vq2_A          320 KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSAN  394 (606)
T ss_dssp             SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCC
T ss_pred             cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhh
Confidence            4555 44 8899999999999655443  567889999999999998866  37788899999999999999884 6688


Q ss_pred             cCCCCCCcEEEccCCcccccCC-cccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcc-cCChhhhCCCC
Q 041300          377 LGKLNSLTKLILRGNQLTGRLP-TEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVL-ELPKELEKLVQ  454 (716)
Q Consensus       377 ~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~  454 (716)
                      +..+++|+.|++++|++.+..| ..+..+++|++|++++|.+.+..|..+.++++|++|++++|++++ ..|..+..+++
T Consensus       395 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  474 (606)
T 3vq2_A          395 FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTN  474 (606)
T ss_dssp             CTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred             ccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCC
Confidence            8889999999999999987776 678889999999999999998888889999999999999999987 47888889999


Q ss_pred             CCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCcccccCCCccccC-CCCcccccC
Q 041300          455 LSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNSTAFR-NAPVEALEG  533 (716)
Q Consensus       455 L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~~p~~~~~~-~~~~~~~~~  533 (716)
                      |++|++++|.+++..|..+..+++|+.|++++|++++.+|..|..+++|+.||+++|+++..++....+. ......+.+
T Consensus       475 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~  554 (606)
T 3vq2_A          475 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTN  554 (606)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCS
T ss_pred             CCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccC
Confidence            9999999999998888889999999999999999998889999999999999999999986544433443 356667888


Q ss_pred             CCCCCCC
Q 041300          534 NKELCGG  540 (716)
Q Consensus       534 n~~~c~~  540 (716)
                      |++.|..
T Consensus       555 N~~~c~c  561 (606)
T 3vq2_A          555 NSVACIC  561 (606)
T ss_dssp             CCCCCSS
T ss_pred             CCcccCC
Confidence            8888853

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=6.7e-54  Score=494.27  Aligned_cols=464  Identities=22%  Similarity=0.248  Sum_probs=311.4

Q ss_pred             hHHHHHHHHHHhhcccCCCCCCCCCcCCCCCCCCCCCC--cce------------eeeeeCCCCCEEEEEcCCCCCcccc
Q 041300            2 NEEADALLKWKASLQSHNQSLLPSWTNASTNVSSKISP--CAW------------YGISCNDAGRVTNISLRNTGLSGTL   67 (716)
Q Consensus         2 ~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~--c~w------------~gv~c~~~~~v~~l~l~~~~l~~~~   67 (716)
                      .+|++||++||+++ .+|     +|.....+  ...+|  |.|            .||+|+..++|+.|+|+++++.|.+
T Consensus       268 ~~d~~ALl~~k~~l-~~~-----~W~~~~~~--~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~i  339 (876)
T 4ecn_A          268 IKDYKALKAIWEAL-DGK-----NWRYYSGT--INNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRV  339 (876)
T ss_dssp             HHHHHHHHHHHHHT-TGG-----GCCCCCSS--CSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEE
T ss_pred             hHHHHHHHHHHHHc-CCC-----CCCcCCCc--ccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCcC
Confidence            47899999999999 444     79533211  11256  999            9999998899999999999999999


Q ss_pred             CCCCCCCCCCCcEEEC-CCCCccccCcccc--------------------------------------------------
Q 041300           68 RDFSFSSFPQLVHLDL-SLNGFFGTIPSQI--------------------------------------------------   96 (716)
Q Consensus        68 ~~~~f~~l~~L~~L~L-s~n~i~~~~~~~~--------------------------------------------------   96 (716)
                       +.+|+.++.|++||| ++|.+.|..|...                                                  
T Consensus       340 -p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~  418 (876)
T 4ecn_A          340 -PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIK  418 (876)
T ss_dssp             -CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCC
T ss_pred             -chHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccc
Confidence             468999999999999 8998876633211                                                  


Q ss_pred             -cCCCCCCEEECc--CCcCcccCCccccCCCCCCEEEcccccCcc-----------------CCCcccc--CCCCCceee
Q 041300           97 -GNLTKLSYISLD--SNQLSGKIPAEVGLLTHLKVLSFQFNELDG-----------------SIPPEVC--QLSSIEELF  154 (716)
Q Consensus        97 -~~l~~L~~L~Ls--~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-----------------~~~~~~~--~l~~L~~L~  154 (716)
                       .....++.+.+.  +|.+++ +|..|+++++|++|+|++|.+++                 .+|..++  ++++|++|+
T Consensus       419 ~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~  497 (876)
T 4ecn_A          419 KDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVE  497 (876)
T ss_dssp             CCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEE
T ss_pred             cccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEE
Confidence             112233334443  377887 78888999999999999999887                 3777776  888888888


Q ss_pred             cccccccCCCCccccCCcCCcEEEeeccc-ccc-cccccccCCCCCceeeCCCCCcccCCCCccCEEEeeCCcCcccCCC
Q 041300          155 LYSNHLNGSLPPFLGNLSNIVRLYINNNS-LSG-SILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPP  232 (716)
Q Consensus       155 L~~N~l~~~~p~~~~~l~~L~~L~L~~n~-l~~-~~~~~l~~l~~L~~L~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  232 (716)
                      |++|.+.+.+|..|+++++|+.|+|++|+ +++ .+|..++.++           ..+..+++|+.|++++|.++ .+|.
T Consensus       498 Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~-----------~~~~~l~~L~~L~Ls~N~L~-~ip~  565 (876)
T 4ecn_A          498 LYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLA-----------DDEDTGPKIQIFYMGYNNLE-EFPA  565 (876)
T ss_dssp             EESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHH-----------HCTTTTTTCCEEECCSSCCC-BCCC
T ss_pred             CcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhh-----------hcccccCCccEEEeeCCcCC-ccCC
Confidence            88888888888888888888888888887 877 6776665443           12334567888888888887 5666


Q ss_pred             --cccc-ccccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCC-CcEEEccCCcCCCccchhhCCC
Q 041300          233 --SFGN-SMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTS-LIRVRLNGNNLTGNISEALGLY  308 (716)
Q Consensus       233 --~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~-L~~L~l~~n~l~~~~~~~~~~~  308 (716)
                        .+.. .+|+.|++++|.++ .+| .+..++.|+.|++++|.+. .+|..+.++++ |+.|++++|.++ .+|..+..+
T Consensus       566 ~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~  641 (876)
T 4ecn_A          566 SASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAK  641 (876)
T ss_dssp             HHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTT
T ss_pred             hhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhcc
Confidence              5544 36777777777777 555 6667777777777777777 66666777776 777777777776 445555544


Q ss_pred             CC--CCEEEccCCccccccCCCC---C--CCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCC--
Q 041300          309 PN--LTFIDLSRNNFYGEISSNW---G--KCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGK--  379 (716)
Q Consensus       309 ~~--L~~L~Ls~n~l~~~~~~~~---~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--  379 (716)
                      +.  |+.|++++|.+.+.+|...   .  .+++|+.|+|++|+++...+..+..+++|+.|+|++|+++ .+|..+..  
T Consensus       642 ~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~  720 (876)
T 4ecn_A          642 SVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPK  720 (876)
T ss_dssp             CSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCT
T ss_pred             ccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccc
Confidence            33  7777777777766544221   1  2346677777777776433333446667777777777766 44433222  


Q ss_pred             ------CCCCcEEEccCCcccccCCcccC--CCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhC
Q 041300          380 ------LNSLTKLILRGNQLTGRLPTEIG--SLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEK  451 (716)
Q Consensus       380 ------l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  451 (716)
                            +++|+.|+|++|+++ .+|..+.  .+++|+.|+|++|.+++ +|..+..+++|+.|+|++|+           
T Consensus       721 ~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~-----------  787 (876)
T 4ecn_A          721 DGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR-----------  787 (876)
T ss_dssp             TSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB-----------
T ss_pred             cccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC-----------
Confidence                  226666666666666 4555554  66666666666666665 45566666666666665532           


Q ss_pred             CCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCcccc
Q 041300          452 LVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQG  515 (716)
Q Consensus       452 l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~  515 (716)
                             ++++|.+.+.+|..+..+++|+.|+|++|+| +.+|..+.  ++|+.||+++|++..
T Consensus       788 -------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~  841 (876)
T 4ecn_A          788 -------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNIS  841 (876)
T ss_dssp             -------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCE
T ss_pred             -------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCc
Confidence                   2223555555555555555555555555555 34444333  355555555555543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.1e-52  Score=493.26  Aligned_cols=485  Identities=23%  Similarity=0.212  Sum_probs=362.5

Q ss_pred             cceeeeeeCCCCCEEEEEcCCCCCccccCCCCCCCCCCCcEEECCCCCcccc-CcccccCCCCCCEEECcCCcCcccCCc
Q 041300           40 CAWYGISCNDAGRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGT-IPSQIGNLTKLSYISLDSNQLSGKIPA  118 (716)
Q Consensus        40 c~w~gv~c~~~~~v~~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p~  118 (716)
                      |.|..|.+ -..+++.|+|++|.+.+ +.+.+|..+++|++|||++|.+.+. .|.+|.++++|++|+|++|.+++..|.
T Consensus        14 ~~L~~vP~-lp~~l~~LdLs~N~i~~-i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~   91 (844)
T 3j0a_A           14 CNLTQVPQ-VLNTTERLLLSFNYIRT-VTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD   91 (844)
T ss_dssp             CCSSCCCS-SCTTCCEEEEESCCCCE-ECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred             CCCCCCCC-CCCCcCEEECCCCcCCc-cChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence            46777777 45689999999999984 4477899999999999999966544 488999999999999999999999999


Q ss_pred             cccCCCCCCEEEcccccCccCCCcc--ccCCCCCceeecccccccCCCC-ccccCCcCCcEEEeecccccccccccccCC
Q 041300          119 EVGLLTHLKVLSFQFNELDGSIPPE--VCQLSSIEELFLYSNHLNGSLP-PFLGNLSNIVRLYINNNSLSGSILTNIGNL  195 (716)
Q Consensus       119 ~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l  195 (716)
                      .|+++++|++|+|++|.+++.+|..  |.++++|++|+|++|.+++..+ ..|+++++|++|+|++|.+++..+..+..+
T Consensus        92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l  171 (844)
T 3j0a_A           92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL  171 (844)
T ss_dssp             SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred             HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence            9999999999999999999866665  9999999999999999988765 689999999999999999999888888887


Q ss_pred             --CCCceeeCCCC------CcccCCCCc------cCEEEeeCCcCcccCCCcccc-------------------------
Q 041300          196 --KFLFELDLSFL------PLSVGNLTN------LKSLGLMDNHLSGSIPPSFGN-------------------------  236 (716)
Q Consensus       196 --~~L~~L~l~~~------~~~~~~l~~------L~~L~l~~n~l~~~~~~~~~~-------------------------  236 (716)
                        +.|+.|+++..      |..+..+.+      |+.|++++|.+.+..+..+..                         
T Consensus       172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~  251 (844)
T 3j0a_A          172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN  251 (844)
T ss_dssp             HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSS
T ss_pred             cCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccc
Confidence              88999988753      334444443      999999999887666554321                         


Q ss_pred             --------------ccccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccc
Q 041300          237 --------------SMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNIS  302 (716)
Q Consensus       237 --------------~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~  302 (716)
                                    ..++.|++++|.+.+..+..+..++.|+.|++++|.+.+..|..|..+++|+.|++++|.+++..+
T Consensus       252 l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  331 (844)
T 3j0a_A          252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS  331 (844)
T ss_dssp             STTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCS
T ss_pred             cCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCH
Confidence                          357777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             hhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCC
Q 041300          303 EALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNS  382 (716)
Q Consensus       303 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  382 (716)
                      ..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++.     ..+++|+.|++++|+++ .+|..   ..+
T Consensus       332 ~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~~---~~~  402 (844)
T 3j0a_A          332 SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLPKI---NLT  402 (844)
T ss_dssp             CSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCCCC---CTT
T ss_pred             HHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-ccccc---ccc
Confidence            7777777777777777777777666777777777777777777632     22566777777777766 33332   334


Q ss_pred             CcEEEccCCcccccCC-cccCCCCCCCEEEccCCcCCccCch-hhcCcCCCCEEECcCCcCc-----ccCChhhhCCCCC
Q 041300          383 LTKLILRGNQLTGRLP-TEIGSLIELEYLDFSANKFNNSVPE-SLGNLLKLHYLGLSNNQFV-----LELPKELEKLVQL  455 (716)
Q Consensus       383 L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~-----~~~~~~~~~l~~L  455 (716)
                      ++.|++++|++++... ..+..+++|+.|+|++|.+++..+. .+..+++|+.|++++|.++     +..+..|.++++|
T Consensus       403 l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L  482 (844)
T 3j0a_A          403 ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHL  482 (844)
T ss_dssp             CCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCE
T ss_pred             cceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccc
Confidence            5666666666654211 1234667777777777777654332 3445667777777777765     2334456667777


Q ss_pred             CEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCcccccCCCccccCCCCcccccCCC
Q 041300          456 SELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNSTAFRNAPVEALEGNK  535 (716)
Q Consensus       456 ~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~  535 (716)
                      ++|+|++|.+++..|..+..+++|+.|+|++|+|++..+..+.  ++|+.||+++|++++.+|..  +.......+.+|+
T Consensus       483 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np  558 (844)
T 3j0a_A          483 QVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNK  558 (844)
T ss_dssp             ECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEEC
T ss_pred             cEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCC
Confidence            7777777777777777777777777777777777776666655  66777777777777766643  4455555666777


Q ss_pred             CCCC
Q 041300          536 ELCG  539 (716)
Q Consensus       536 ~~c~  539 (716)
                      +.|.
T Consensus       559 ~~C~  562 (844)
T 3j0a_A          559 FICE  562 (844)
T ss_dssp             CCCS
T ss_pred             cccc
Confidence            7663

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.6e-50  Score=465.82  Aligned_cols=478  Identities=22%  Similarity=0.205  Sum_probs=373.5

Q ss_pred             EEEcCCCCCccccCCCCCCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcccc
Q 041300           55 NISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFN  134 (716)
Q Consensus        55 ~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N  134 (716)
                      .++.+++++. .++. .+.  +++++|+|++|.+.++.+..|.++++|++|+|++|.+++..|..|+.+++|++|+|++|
T Consensus         8 ~~~cs~~~L~-~ip~-~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n   83 (680)
T 1ziw_A            8 VADCSHLKLT-QVPD-DLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN   83 (680)
T ss_dssp             EEECCSSCCS-SCCS-CSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred             eeECCCCCcc-cccc-ccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC
Confidence            4666677775 4432 232  78999999999999988889999999999999999999999999999999999999999


Q ss_pred             cCccCCCccccCCCCCceeecccccccCCCCccccCCcCCcEEEeecccccccccccccCCCCCceeeCCCCCc------
Q 041300          135 ELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPL------  208 (716)
Q Consensus       135 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~~~~------  208 (716)
                      .+++..+..|.++++|++|+|++|.+++..|..|+++++|++|++++|.+++..+..+.+++.|++|+++....      
T Consensus        84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  163 (680)
T 1ziw_A           84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE  163 (680)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHH
T ss_pred             ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHH
Confidence            99977777899999999999999999988889999999999999999999999999999999999999986432      


Q ss_pred             c--cCCCCccCEEEeeCCcCcccCCCcccc----------------------------ccccEEEccCCcCccccCcccc
Q 041300          209 S--VGNLTNLKSLGLMDNHLSGSIPPSFGN----------------------------SMLTWLTLSGNHFTGYLPHNIC  258 (716)
Q Consensus       209 ~--~~~l~~L~~L~l~~n~l~~~~~~~~~~----------------------------~~L~~L~L~~n~l~~~~~~~~~  258 (716)
                      .  +..+++|++|++++|.+++..|..+..                            ..|+.|++++|.+++..+..+.
T Consensus       164 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~  243 (680)
T 1ziw_A          164 ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL  243 (680)
T ss_dssp             HHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG
T ss_pred             HhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh
Confidence            2  235689999999999999887765542                            4588899999999999888888


Q ss_pred             CCCC--ccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCcccc-----ccC----C
Q 041300          259 RGGL--LEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYG-----EIS----S  327 (716)
Q Consensus       259 ~~~~--L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~-----~~~----~  327 (716)
                      .++.  |+.|++++|++.+..|..|.++++|+.|++++|.+++..+..+..+++|++|++++|...+     .+|    .
T Consensus       244 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~  323 (680)
T 1ziw_A          244 GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF  323 (680)
T ss_dssp             GGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTT
T ss_pred             ccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChh
Confidence            7754  9999999999999999999999999999999999998877777766666666666554332     111    2


Q ss_pred             CCCCCCCCCEEEcccCcCcccCcccccCCCC----------------------------CCEEEccCCccccccCcccCC
Q 041300          328 NWGKCPKLGTLNVSMNNITGGIPREIGNMSQ----------------------------LQALDLSLNHIVGEIPKELGK  379 (716)
Q Consensus       328 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~----------------------------L~~L~L~~n~l~~~~~~~~~~  379 (716)
                      .|..+++|++|++++|.+++..+..|.++++                            |+.|++++|++++..|..+..
T Consensus       324 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~  403 (680)
T 1ziw_A          324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW  403 (680)
T ss_dssp             TTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTT
T ss_pred             hcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhC
Confidence            4555556666666666655555554544444                            444444556666666777888


Q ss_pred             CCCCcEEEccCCcccccCC-cccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCc--ccCChhhhCCCCCC
Q 041300          380 LNSLTKLILRGNQLTGRLP-TEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFV--LELPKELEKLVQLS  456 (716)
Q Consensus       380 l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~  456 (716)
                      +++|+.|++++|++++.+| ..+.++++|++|++++|.+.+..+..|..+++|+.|++++|.+.  +..|..+..+++|+
T Consensus       404 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~  483 (680)
T 1ziw_A          404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT  483 (680)
T ss_dssp             CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCC
T ss_pred             CCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCC
Confidence            8888888888888876555 56788888888888888888777777888888888888888775  45677777888888


Q ss_pred             EEECCCCcCccccchhccCCCCCCEEECcCCcCcccCC--------cCCcCCCCCCEEEccCCcccccCCC-ccccCCCC
Q 041300          457 ELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIP--------NCFEGMHGLSIIDISDNQLQGPVPN-STAFRNAP  527 (716)
Q Consensus       457 ~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~--------~~~~~~~~L~~l~ls~N~l~~~~p~-~~~~~~~~  527 (716)
                      .|++++|.+++..+..+..+++|+.|++++|++++..+        ..|.++++|+.|++++|+++...+. ...+....
T Consensus       484 ~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~  563 (680)
T 1ziw_A          484 ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELK  563 (680)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             EEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcc
Confidence            88888888887777777778888888888888776422        2366777888888888887743332 23344444


Q ss_pred             cccccCCCC
Q 041300          528 VEALEGNKE  536 (716)
Q Consensus       528 ~~~~~~n~~  536 (716)
                      ...+.+|..
T Consensus       564 ~L~Ls~N~l  572 (680)
T 1ziw_A          564 IIDLGLNNL  572 (680)
T ss_dssp             EEECCSSCC
T ss_pred             eeECCCCCC
Confidence            455555543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.9e-50  Score=458.95  Aligned_cols=459  Identities=19%  Similarity=0.176  Sum_probs=403.6

Q ss_pred             CCEEEEEcCCCCCccccCCCCCCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEE
Q 041300           51 GRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLS  130 (716)
Q Consensus        51 ~~v~~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  130 (716)
                      .+++.|++++|.+.+ +.+..|..+++|++|+|++|.+.+..|.+|.++++|++|+|++|.+++..+..|+.+++|++|+
T Consensus        56 ~~L~~L~Ls~n~l~~-i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  134 (606)
T 3vq2_A           56 SELQWLDLSRCEIET-IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLN  134 (606)
T ss_dssp             TTCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEE
T ss_pred             ccCcEEeCCCCcccc-cCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEe
Confidence            479999999999984 5467899999999999999999999999999999999999999999988888999999999999


Q ss_pred             cccccCcc-CCCccccCCCCCceeecccccccCCCCccccCCcCCc----EEEeecccccccccccccCCCCCceeeCCC
Q 041300          131 FQFNELDG-SIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIV----RLYINNNSLSGSILTNIGNLKFLFELDLSF  205 (716)
Q Consensus       131 L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~----~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~  205 (716)
                      +++|.+.+ .+|..|.++++|++|++++|.+++..|..|+.+++|+    +|++++|.+++..+..+... .|+.|+++.
T Consensus       135 L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~  213 (606)
T 3vq2_A          135 VAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRG  213 (606)
T ss_dssp             CCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEES
T ss_pred             CCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccC
Confidence            99999986 5699999999999999999999999999898887765    89999999987666666555 788888876


Q ss_pred             CC-------cccCCCCccCEEEe---------------------------------eCCcCcccCCCccccccccEEEcc
Q 041300          206 LP-------LSVGNLTNLKSLGL---------------------------------MDNHLSGSIPPSFGNSMLTWLTLS  245 (716)
Q Consensus       206 ~~-------~~~~~l~~L~~L~l---------------------------------~~n~l~~~~~~~~~~~~L~~L~L~  245 (716)
                      ..       ..+.++++|+.+++                                 ..|.+.+..|.......|+.|+++
T Consensus       214 n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~  293 (606)
T 3vq2_A          214 NFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLA  293 (606)
T ss_dssp             CCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEE
T ss_pred             CccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEec
Confidence            43       23445555555444                                 566777777773334589999999


Q ss_pred             CCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccc-
Q 041300          246 GNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGE-  324 (716)
Q Consensus       246 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~-  324 (716)
                      +|.+... | .+..++.|+.|++++|.+ +.+| .+ .+++|+.|++++|...+..  .+..+++|++|++++|.+++. 
T Consensus       294 ~~~~~~l-~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~  366 (606)
T 3vq2_A          294 GVSIKYL-E-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSG  366 (606)
T ss_dssp             SCCCCCC-C-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEE
T ss_pred             Cccchhh-h-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCc
Confidence            9999764 4 788889999999999999 6777 45 9999999999999665443  677899999999999999876 


Q ss_pred             -cCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccC-cccCCCCCCcEEEccCCcccccCCcccC
Q 041300          325 -ISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIP-KELGKLNSLTKLILRGNQLTGRLPTEIG  402 (716)
Q Consensus       325 -~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~  402 (716)
                       .+..+..+++|++|++++|.+++ +|..+..+++|+.|++++|++.+..| ..+..+++|+.|++++|++++..|..+.
T Consensus       367 ~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  445 (606)
T 3vq2_A          367 CCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL  445 (606)
T ss_dssp             ECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTT
T ss_pred             chhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhc
Confidence             37788899999999999999985 56889999999999999999998877 6899999999999999999999999999


Q ss_pred             CCCCCCEEEccCCcCCc-cCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCE
Q 041300          403 SLIELEYLDFSANKFNN-SVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEK  481 (716)
Q Consensus       403 ~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~  481 (716)
                      .+++|++|++++|.+.+ ..|..+..+++|+.|++++|++++..|..+..+++|++|++++|++++..|..+..+++|+.
T Consensus       446 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  525 (606)
T 3vq2_A          446 GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLST  525 (606)
T ss_dssp             TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCE
T ss_pred             CCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCE
Confidence            99999999999999997 47889999999999999999999999999999999999999999999999999999999999


Q ss_pred             EECcCCcCcccCCcCCcCCC-CCCEEEccCCcccccCCCc
Q 041300          482 LNLSHNNLSGLIPNCFEGMH-GLSIIDISDNQLQGPVPNS  520 (716)
Q Consensus       482 L~ls~N~l~~~~~~~~~~~~-~L~~l~ls~N~l~~~~p~~  520 (716)
                      |++++|+++. +|..+..++ +|+.+++++|++.+..+..
T Consensus       526 L~l~~N~l~~-~p~~~~~l~~~L~~l~l~~N~~~c~c~~~  564 (606)
T 3vq2_A          526 LDCSFNRIET-SKGILQHFPKSLAFFNLTNNSVACICEHQ  564 (606)
T ss_dssp             EECTTSCCCC-EESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred             EECCCCcCcc-cCHhHhhhcccCcEEEccCCCcccCCccH
Confidence            9999999995 555588887 5999999999999877653

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.8e-50  Score=454.43  Aligned_cols=462  Identities=22%  Similarity=0.214  Sum_probs=401.9

Q ss_pred             CCEEEEEcCCCCCccccCCCCCCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEE
Q 041300           51 GRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLS  130 (716)
Q Consensus        51 ~~v~~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  130 (716)
                      .+++.|++++|.+.+ +.+.+|..+++|++|||++|.+.++.+..|.++++|++|+|++|.+++..|..|+.+++|++|+
T Consensus        28 ~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (570)
T 2z63_A           28 FSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (570)
T ss_dssp             SSCCEEECCSCCCCE-ECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             ccccEEEccCCccCc-cChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence            468999999999984 5567899999999999999999998899999999999999999999988889999999999999


Q ss_pred             cccccCccCCCccccCCCCCceeecccccccC-CCCccccCCcCCcEEEeecccccccccccccCCCCC----ceeeCCC
Q 041300          131 FQFNELDGSIPPEVCQLSSIEELFLYSNHLNG-SLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFL----FELDLSF  205 (716)
Q Consensus       131 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L----~~L~l~~  205 (716)
                      +++|.+++..+..|+++++|++|++++|.+++ ..|..|+++++|++|++++|.+++..+..+..++.|    ..++++.
T Consensus       107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~  186 (570)
T 2z63_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL  186 (570)
T ss_dssp             CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred             ccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCC
Confidence            99999997777689999999999999999987 469999999999999999999998888888888877    7788775


Q ss_pred             CC------cccCCCCccCEEEeeCCcCcc-------------------------------cCCCcc---ccccccEEEcc
Q 041300          206 LP------LSVGNLTNLKSLGLMDNHLSG-------------------------------SIPPSF---GNSMLTWLTLS  245 (716)
Q Consensus       206 ~~------~~~~~l~~L~~L~l~~n~l~~-------------------------------~~~~~~---~~~~L~~L~L~  245 (716)
                      ..      ..+.. .+|+.|++++|....                               .....+   ....++.++++
T Consensus       187 n~l~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~  265 (570)
T 2z63_A          187 NPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA  265 (570)
T ss_dssp             CCCCEECTTTTTT-CEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEE
T ss_pred             CCceecCHHHhcc-CcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhh
Confidence            42      23333 378999888874221                               001111   11246777777


Q ss_pred             CC-cCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccc
Q 041300          246 GN-HFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGE  324 (716)
Q Consensus       246 ~n-~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~  324 (716)
                      ++ .+.+..+..+..++.|+.|++++|.+. .+|..+..+ +|+.|++++|.+.....   ..+++|+.|++++|.+.+.
T Consensus       266 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~---~~l~~L~~L~l~~n~~~~~  340 (570)
T 2z63_A          266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNA  340 (570)
T ss_dssp             ETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCB---CBCSSCCEEEEESCBSCCB
T ss_pred             cchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccccCc---ccccccCEEeCcCCccccc
Confidence            77 777788888889999999999999998 578888888 99999999999984433   4678999999999998876


Q ss_pred             cCCCCCCCCCCCEEEcccCcCcccC--cccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCC-ccc
Q 041300          325 ISSNWGKCPKLGTLNVSMNNITGGI--PREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLP-TEI  401 (716)
Q Consensus       325 ~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~  401 (716)
                      .+.  ..+++|+.|++++|.+++..  +..+..+++|++|++++|.+.+..+. +..+++|+.|++++|++++..+ ..+
T Consensus       341 ~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~  417 (570)
T 2z63_A          341 FSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVF  417 (570)
T ss_dssp             CCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTT
T ss_pred             ccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhh
Confidence            654  78899999999999998664  67889999999999999999865544 9999999999999999997766 468


Q ss_pred             CCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCc-ccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCC
Q 041300          402 GSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFV-LELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLE  480 (716)
Q Consensus       402 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~  480 (716)
                      ..+++|++|++++|.+.+..|..+.++++|++|++++|+++ +.+|..+..+++|++|++++|++++..|..+..+++|+
T Consensus       418 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  497 (570)
T 2z63_A          418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ  497 (570)
T ss_dssp             TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             hcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCC
Confidence            89999999999999999999999999999999999999997 57889999999999999999999998899999999999


Q ss_pred             EEECcCCcCcccCCcCCcCCCCCCEEEccCCcccccCCCccc
Q 041300          481 KLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNSTA  522 (716)
Q Consensus       481 ~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~~p~~~~  522 (716)
                      .|++++|++++.+|..|..+++|+.|++++|+++|.+|....
T Consensus       498 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~  539 (570)
T 2z63_A          498 VLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY  539 (570)
T ss_dssp             EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHH
T ss_pred             EEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHH
Confidence            999999999999899999999999999999999999887543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=3.8e-49  Score=463.26  Aligned_cols=455  Identities=20%  Similarity=0.166  Sum_probs=401.0

Q ss_pred             CCEEEEEcCCCCCccccCCCCCCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCcc--ccCCCCCCE
Q 041300           51 GRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAE--VGLLTHLKV  128 (716)
Q Consensus        51 ~~v~~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~--~~~l~~L~~  128 (716)
                      ..++.|+|++|...+.+.+.+|.++++|++|+|++|.+.+..|.+|.++++|++|+|++|.+++.+|..  |+.+++|++
T Consensus        48 ~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~  127 (844)
T 3j0a_A           48 EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR  127 (844)
T ss_dssp             CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCE
T ss_pred             ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCE
Confidence            478999999998888888889999999999999999999999999999999999999999999866665  999999999


Q ss_pred             EEcccccCccCCC-ccccCCCCCceeecccccccCCCCccccCC--cCCcEEEeecccccccccccccCCCC------Cc
Q 041300          129 LSFQFNELDGSIP-PEVCQLSSIEELFLYSNHLNGSLPPFLGNL--SNIVRLYINNNSLSGSILTNIGNLKF------LF  199 (716)
Q Consensus       129 L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~------L~  199 (716)
                      |+|++|.+.+..+ ..|.++++|++|+|++|.+++..|..|..+  ++|+.|++++|.+++..+..+..+..      |+
T Consensus       128 L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~  207 (844)
T 3j0a_A          128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLE  207 (844)
T ss_dssp             EEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBS
T ss_pred             EECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCcee
Confidence            9999999987765 579999999999999999999999999888  89999999999999888877776665      88


Q ss_pred             eeeCCCCC------cc------------------------------------cCC--CCccCEEEeeCCcCcccCCCccc
Q 041300          200 ELDLSFLP------LS------------------------------------VGN--LTNLKSLGLMDNHLSGSIPPSFG  235 (716)
Q Consensus       200 ~L~l~~~~------~~------------------------------------~~~--l~~L~~L~l~~n~l~~~~~~~~~  235 (716)
                      .|+++...      ..                                    +..  .++|+.|++++|.+.+..|..|.
T Consensus       208 ~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~  287 (844)
T 3j0a_A          208 ILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE  287 (844)
T ss_dssp             EEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSS
T ss_pred             EEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhh
Confidence            88887531      11                                    111  26899999999999988888776


Q ss_pred             cc-cccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEE
Q 041300          236 NS-MLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFI  314 (716)
Q Consensus       236 ~~-~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  314 (716)
                      .. .|+.|++++|.+++..+..|..++.|+.|++++|.+.+..|..|..+++|+.|++++|.+++..+..|..+++|++|
T Consensus       288 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L  367 (844)
T 3j0a_A          288 TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTL  367 (844)
T ss_dssp             SCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEE
T ss_pred             cCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEE
Confidence            64 89999999999999999999999999999999999999999999999999999999999999998999999999999


Q ss_pred             EccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccC-cccCCCCCCcEEEccCCcc
Q 041300          315 DLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIP-KELGKLNSLTKLILRGNQL  393 (716)
Q Consensus       315 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l  393 (716)
                      ++++|.+++.     ..+++|+.|++++|+++. +|..   ..+++.|++++|++++... ..+..+++|+.|+|++|++
T Consensus       368 ~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~-l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l  438 (844)
T 3j0a_A          368 DLRDNALTTI-----HFIPSIPDIFLSGNKLVT-LPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRF  438 (844)
T ss_dssp             EEETCCSCCC-----SSCCSCSEEEEESCCCCC-CCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCC
T ss_pred             ECCCCCCCcc-----cCCCCcchhccCCCCccc-cccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcc
Confidence            9999999854     237899999999999984 4433   5689999999999986432 2356899999999999999


Q ss_pred             cccCCc-ccCCCCCCCEEEccCCcCC-----ccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCcc
Q 041300          394 TGRLPT-EIGSLIELEYLDFSANKFN-----NSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGG  467 (716)
Q Consensus       394 ~~~~~~-~~~~l~~L~~L~Ls~N~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~  467 (716)
                      ++..+. .+..+++|+.|+|++|.++     +..+..|.++++|+.|+|++|++++..|..|..+++|+.|+|++|++++
T Consensus       439 ~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  518 (844)
T 3j0a_A          439 SSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV  518 (844)
T ss_dssp             CCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSS
T ss_pred             cccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCc
Confidence            865443 3567899999999999997     4445678899999999999999999889999999999999999999998


Q ss_pred             ccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCcccccCCC
Q 041300          468 EIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPN  519 (716)
Q Consensus       468 ~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~~p~  519 (716)
                      ..|..+.  ++|+.|++++|+|++.+|..|.   +|+.+++++|++.|.++.
T Consensus       519 l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~  565 (844)
T 3j0a_A          519 LSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECEL  565 (844)
T ss_dssp             CCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSC
T ss_pred             cChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCccccccc
Confidence            7777665  8999999999999999998764   789999999999987764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=2e-49  Score=445.14  Aligned_cols=468  Identities=19%  Similarity=0.190  Sum_probs=387.3

Q ss_pred             CcceeeeeeCCC------------CCEEEEEcCCCCCccccCCCCCCCCCCCcEEECCCCCccccCcccccCCCCCCEEE
Q 041300           39 PCAWYGISCNDA------------GRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYIS  106 (716)
Q Consensus        39 ~c~w~gv~c~~~------------~~v~~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  106 (716)
                      +|.|.|+ |+..            .+++.|++++|++.+. .+..|..+++|++|+|++|++.+..|.+|.++++|++|+
T Consensus         3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   80 (549)
T 2z81_A            3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD   80 (549)
T ss_dssp             EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             cCCCCce-EECCCCccccccccCCCCccEEECcCCccCcc-ChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEE
Confidence            5899998 8632            2689999999999854 466899999999999999999999999999999999999


Q ss_pred             CcCCcCcccCCccccCCCCCCEEEcccccCccC-CCccccCCCCCceeeccccc-ccCCCCccccCCcCCcEEEeecccc
Q 041300          107 LDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGS-IPPEVCQLSSIEELFLYSNH-LNGSLPPFLGNLSNIVRLYINNNSL  184 (716)
Q Consensus       107 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~L~~n~l  184 (716)
                      |++|.+++..|..|+.+++|++|++++|.+++. .|..|.++++|++|++++|. +....+..|.++++|++|++++|.+
T Consensus        81 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l  160 (549)
T 2z81_A           81 LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL  160 (549)
T ss_dssp             CTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred             CCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence            999999988888899999999999999999863 56789999999999999998 4444457899999999999999999


Q ss_pred             cccccccccCCCCCceeeCCCCCc-----c-cCCCCccCEEEeeCCcCcccC--CCcc--ccccccEEEccCCcCccccC
Q 041300          185 SGSILTNIGNLKFLFELDLSFLPL-----S-VGNLTNLKSLGLMDNHLSGSI--PPSF--GNSMLTWLTLSGNHFTGYLP  254 (716)
Q Consensus       185 ~~~~~~~l~~l~~L~~L~l~~~~~-----~-~~~l~~L~~L~l~~n~l~~~~--~~~~--~~~~L~~L~L~~n~l~~~~~  254 (716)
                      ++..+..+..++.|+.|+++....     . +..+++|++|++++|.+.+..  |..+  ....|+.|++++|.+++..+
T Consensus       161 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  240 (549)
T 2z81_A          161 RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF  240 (549)
T ss_dssp             CEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHH
T ss_pred             cccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHH
Confidence            999999999999999999865432     1 246889999999999998742  1111  23479999999999887544


Q ss_pred             c----cccCCCCccEEEecCCcccccC------CcccccCCCCcEEEccCCcCCCc-----cchhhCCCCCCCEEEccCC
Q 041300          255 H----NICRGGLLEAFIVSENHFQGTI------PESLRNCTSLIRVRLNGNNLTGN-----ISEALGLYPNLTFIDLSRN  319 (716)
Q Consensus       255 ~----~~~~~~~L~~L~l~~n~l~~~~------p~~l~~l~~L~~L~l~~n~l~~~-----~~~~~~~~~~L~~L~Ls~n  319 (716)
                      .    .+.....|+.+++++|.+.+..      ...+..+.+|+.|.+.++.+...     .+..+...++|+.|++++|
T Consensus       241 ~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n  320 (549)
T 2z81_A          241 NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS  320 (549)
T ss_dssp             HHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESS
T ss_pred             HHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccC
Confidence            3    3455788999999999887642      23456778999999999887643     1222344578999999999


Q ss_pred             ccccccCCCC-CCCCCCCEEEcccCcCcccCcc---cccCCCCCCEEEccCCccccccC--cccCCCCCCcEEEccCCcc
Q 041300          320 NFYGEISSNW-GKCPKLGTLNVSMNNITGGIPR---EIGNMSQLQALDLSLNHIVGEIP--KELGKLNSLTKLILRGNQL  393 (716)
Q Consensus       320 ~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~N~l  393 (716)
                      .+.. +|..+ ..+++|++|++++|++++..|.   .++.+++|++|++++|++++..+  ..+..+++|++|++++|++
T Consensus       321 ~l~~-ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l  399 (549)
T 2z81_A          321 KVFL-VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF  399 (549)
T ss_dssp             CCCC-CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred             cccc-CCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCC
Confidence            9874 45444 5799999999999999987643   47889999999999999986533  4588899999999999999


Q ss_pred             cccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhc
Q 041300          394 TGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQI  473 (716)
Q Consensus       394 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~  473 (716)
                      + .+|..+..+++|++|++++|.++. +|..+  .++|++|++++|++++..    ..+++|++|++++|+++ .+|. .
T Consensus       400 ~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~  469 (549)
T 2z81_A          400 H-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-A  469 (549)
T ss_dssp             C-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-G
T ss_pred             c-cCChhhcccccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-c
Confidence            8 678889999999999999999984 44333  268999999999998643    47889999999999998 5665 4


Q ss_pred             cCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCcccccCCC
Q 041300          474 CSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPN  519 (716)
Q Consensus       474 ~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~~p~  519 (716)
                      ..+++|+.|++++|++++.+|..|..+++|+.|++++|++.|.+|.
T Consensus       470 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  515 (549)
T 2z81_A          470 SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  515 (549)
T ss_dssp             GGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred             ccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence            6789999999999999999999999999999999999999988774

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.8e-47  Score=431.57  Aligned_cols=472  Identities=20%  Similarity=0.185  Sum_probs=403.3

Q ss_pred             EEcCCCCCccccCCCCCCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEccccc
Q 041300           56 ISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNE  135 (716)
Q Consensus        56 l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~  135 (716)
                      ++.++.++. .++. .+  .+.+++|||++|.+.++.+.+|.++++|++|+|++|.+++..|..|+.+++|++|+|++|.
T Consensus        12 ~~c~~~~l~-~ip~-~l--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~   87 (570)
T 2z63_A           12 YQCMELNFY-KIPD-NL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP   87 (570)
T ss_dssp             EECCSSCCS-SCCS-SS--CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             EEeCCCCcc-ccCC-Cc--cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc
Confidence            444455554 3422 22  2579999999999999999999999999999999999998888999999999999999999


Q ss_pred             CccCCCccccCCCCCceeecccccccCCCCccccCCcCCcEEEeecccccc-cccccccCCCCCceeeCCCC------Cc
Q 041300          136 LDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSG-SILTNIGNLKFLFELDLSFL------PL  208 (716)
Q Consensus       136 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~~------~~  208 (716)
                      +++..|..|.++++|++|++++|.+++..+..|+++++|++|++++|.+++ ..|..++++++|+.|+++..      +.
T Consensus        88 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~  167 (570)
T 2z63_A           88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT  167 (570)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGG
T ss_pred             CCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHH
Confidence            998888999999999999999999998877789999999999999999987 46889999999999999864      34


Q ss_pred             ccCCCCcc----CEEEeeCCcCcccCCCccccccccEEEccCCcCcc-------------------------------cc
Q 041300          209 SVGNLTNL----KSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTG-------------------------------YL  253 (716)
Q Consensus       209 ~~~~l~~L----~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~-------------------------------~~  253 (716)
                      .+..+++|    +.|++++|.+.+..|..+....|+.|++++|....                               ..
T Consensus       168 ~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~  247 (570)
T 2z63_A          168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD  247 (570)
T ss_dssp             GGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECC
T ss_pred             HccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcc
Confidence            56666777    89999999999988888887789999999884321                               11


Q ss_pred             CccccCCC--CccEEEecCC-cccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCC
Q 041300          254 PHNICRGG--LLEAFIVSEN-HFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWG  330 (716)
Q Consensus       254 ~~~~~~~~--~L~~L~l~~n-~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~  330 (716)
                      ...+..+.  .++.+.++.+ .+.+..|..+..+++|+.|++++|.++. +|..+..+ +|++|++++|.+.. +|.  .
T Consensus       248 ~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n~~~~-l~~--~  322 (570)
T 2z63_A          248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNF-GWQHLELVNCKFGQ-FPT--L  322 (570)
T ss_dssp             TTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCC-CCSEEEEESCBCSS-CCB--C
T ss_pred             hhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccC-CccEEeeccCcccc-cCc--c
Confidence            11111111  3566777777 7778889999999999999999999985 56667777 99999999999984 343  4


Q ss_pred             CCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCcccccc--CcccCCCCCCcEEEccCCcccccCCcccCCCCCCC
Q 041300          331 KCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEI--PKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELE  408 (716)
Q Consensus       331 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  408 (716)
                      .+++|+.|++++|.+.+..+.  ..+++|++|++++|.+++..  |..+..+++|+.|++++|++++..+. +..+++|+
T Consensus       323 ~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~  399 (570)
T 2z63_A          323 KLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLE  399 (570)
T ss_dssp             BCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCC
T ss_pred             cccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCC
Confidence            789999999999999876655  78999999999999998654  67788999999999999999965544 99999999


Q ss_pred             EEEccCCcCCccCc-hhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCc-cccchhccCCCCCCEEECcC
Q 041300          409 YLDFSANKFNNSVP-ESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFG-GEIPFQICSLKSLEKLNLSH  486 (716)
Q Consensus       409 ~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~-~~~p~~~~~l~~L~~L~ls~  486 (716)
                      .|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+.++++|++|++++|.+. +.+|..+..+++|+.|++++
T Consensus       400 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~  479 (570)
T 2z63_A          400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ  479 (570)
T ss_dssp             EEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred             EEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCC
Confidence            99999999987766 57899999999999999999999999999999999999999998 57899999999999999999


Q ss_pred             CcCcccCCcCCcCCCCCCEEEccCCcccccCCCc-cccCCCCcccccCCCCCCC
Q 041300          487 NNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNS-TAFRNAPVEALEGNKELCG  539 (716)
Q Consensus       487 N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~~c~  539 (716)
                      |++++..|..|..+++|+.|++++|++++.+|.. ..+.......+.+|+..|.
T Consensus       480 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  533 (570)
T 2z63_A          480 CQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  533 (570)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence            9999999999999999999999999999877653 4556666777888988875

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=5.1e-46  Score=417.50  Aligned_cols=476  Identities=22%  Similarity=0.235  Sum_probs=383.5

Q ss_pred             eeeCCCCCEEEEEcCCCCCccccCCCCCCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCC
Q 041300           45 ISCNDAGRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLT  124 (716)
Q Consensus        45 v~c~~~~~v~~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  124 (716)
                      .+|...| +  .|.++++++ .++.. +  .++|++|||++|.+.+..|..|.++++|++|+|++|.+++..|.+|+.++
T Consensus         2 ~~C~~~~-~--c~~~~~~l~-~ip~~-~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~   74 (549)
T 2z81_A            2 LSCDASG-V--CDGRSRSFT-SIPSG-L--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLG   74 (549)
T ss_dssp             CEECTTS-E--EECTTSCCS-SCCSC-C--CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             ccCCCCc-e--EECCCCccc-ccccc-C--CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccc
Confidence            4687655 3  789999887 55442 2  37999999999999999999999999999999999999998899999999


Q ss_pred             CCCEEEcccccCccCCCccccCCCCCceeecccccccCC-CCccccCCcCCcEEEeecccccccc-cccccCCCCCceee
Q 041300          125 HLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGS-LPPFLGNLSNIVRLYINNNSLSGSI-LTNIGNLKFLFELD  202 (716)
Q Consensus       125 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~  202 (716)
                      +|++|+|++|.+++..|..|.++++|++|+|++|.+++. .|..|+++++|++|++++|.+.+.+ +..+..++.|++|+
T Consensus        75 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~  154 (549)
T 2z81_A           75 SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELE  154 (549)
T ss_dssp             TCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE
T ss_pred             cCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeee
Confidence            999999999999988888899999999999999999874 5788999999999999999844444 46888999999888


Q ss_pred             CCC------CCcccCCCCccCEEEeeCCcCcccCCCcc-c-cccccEEEccCCcCcccc--C-ccccCCCCccEEEecCC
Q 041300          203 LSF------LPLSVGNLTNLKSLGLMDNHLSGSIPPSF-G-NSMLTWLTLSGNHFTGYL--P-HNICRGGLLEAFIVSEN  271 (716)
Q Consensus       203 l~~------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~-~~~L~~L~L~~n~l~~~~--~-~~~~~~~~L~~L~l~~n  271 (716)
                      ++.      .|..+..+++|++|+++.|.+.. +|..+ . ..+|++|++++|.+++..  + ......+.|+.|++++|
T Consensus       155 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n  233 (549)
T 2z81_A          155 IKALSLRNYQSQSLKSIRDIHHLTLHLSESAF-LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS  233 (549)
T ss_dssp             EEETTCCEECTTTTTTCSEEEEEEEECSBSTT-HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESC
T ss_pred             ccCCcccccChhhhhccccCceEecccCcccc-cchhhHhhcccccEEEccCCccccccccccchhhhhhcccceecccc
Confidence            764      46677888899999999888763 33333 2 347899999999888752  1 22334678889999998


Q ss_pred             cccccCC----cccccCCCCcEEEccCCcCCCcc------chhhCCCCCCCEEEccCCcccccc-----CCCCCCCCCCC
Q 041300          272 HFQGTIP----ESLRNCTSLIRVRLNGNNLTGNI------SEALGLYPNLTFIDLSRNNFYGEI-----SSNWGKCPKLG  336 (716)
Q Consensus       272 ~l~~~~p----~~l~~l~~L~~L~l~~n~l~~~~------~~~~~~~~~L~~L~Ls~n~l~~~~-----~~~~~~l~~L~  336 (716)
                      .+.+..+    ..+..+++|+.+++++|.+.+..      ...+..+++++.|++.++.+....     +..+...++|+
T Consensus       234 ~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~  313 (549)
T 2z81_A          234 VLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVK  313 (549)
T ss_dssp             EEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCC
T ss_pred             ccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccce
Confidence            8876443    33466788999999998876532      233566788999999888765421     11123357899


Q ss_pred             EEEcccCcCcccCcccc-cCCCCCCEEEccCCccccccCc---ccCCCCCCcEEEccCCcccccCC--cccCCCCCCCEE
Q 041300          337 TLNVSMNNITGGIPREI-GNMSQLQALDLSLNHIVGEIPK---ELGKLNSLTKLILRGNQLTGRLP--TEIGSLIELEYL  410 (716)
Q Consensus       337 ~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L  410 (716)
                      .|++++|.+. .+|..+ ..+++|++|++++|++++..|.   .+..+++|+.|++++|++++..+  ..+..+++|++|
T Consensus       314 ~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L  392 (549)
T 2z81_A          314 RITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSL  392 (549)
T ss_dssp             EEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEE
T ss_pred             EEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEE
Confidence            9999999998 555555 6799999999999999987643   47789999999999999986532  458899999999


Q ss_pred             EccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCc
Q 041300          411 DFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLS  490 (716)
Q Consensus       411 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~  490 (716)
                      ++++|.++ .+|..+..+++|++|++++|+++. +|..+  .++|++|++++|++++.+    ..+++|++|++++|+|+
T Consensus       393 ~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~  464 (549)
T 2z81_A          393 DISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK  464 (549)
T ss_dssp             ECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS
T ss_pred             ECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC
Confidence            99999998 678888999999999999999974 44443  258999999999998753    57899999999999999


Q ss_pred             ccCCcCCcCCCCCCEEEccCCcccccCCC-ccccCCCCcccccCCCCCCC
Q 041300          491 GLIPNCFEGMHGLSIIDISDNQLQGPVPN-STAFRNAPVEALEGNKELCG  539 (716)
Q Consensus       491 ~~~~~~~~~~~~L~~l~ls~N~l~~~~p~-~~~~~~~~~~~~~~n~~~c~  539 (716)
                      . +|. ...+++|+.||+++|++++.+|. ...+.......+.+|++.|.
T Consensus       465 ~-ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  512 (549)
T 2z81_A          465 T-LPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  512 (549)
T ss_dssp             S-CCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCC
T ss_pred             c-CCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCC
Confidence            5 554 46789999999999999998776 35566677777888887773

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2.5e-45  Score=419.63  Aligned_cols=472  Identities=22%  Similarity=0.252  Sum_probs=351.7

Q ss_pred             CCccee----eeeeCCC----------CCEEEEEcCCCCCccccCCCCCCCCCCCcEEECCCCCccccCcccccCCCCCC
Q 041300           38 SPCAWY----GISCNDA----------GRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLS  103 (716)
Q Consensus        38 ~~c~w~----gv~c~~~----------~~v~~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~  103 (716)
                      +||.+.    .|.|...          ..++.|||++|.|+ .+++.+|.++++|++|||++|+|.++.|.+|.++++|+
T Consensus        25 ~~c~~~~~~~~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~  103 (635)
T 4g8a_A           25 EPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS  103 (635)
T ss_dssp             CCSEEEETTTEEECTTSCCSSCCSSSCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred             CCccccCCCCEEECCCCCcCccCCCCCcCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCC
Confidence            567654    3678631          36899999999998 56678999999999999999999999999999999999


Q ss_pred             EEECcCCcCcccCCccccCCCCCCEEEcccccCccCCCccccCCCCCceeecccccccCC-CCccccCCcCCcEEEeecc
Q 041300          104 YISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGS-LPPFLGNLSNIVRLYINNN  182 (716)
Q Consensus       104 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~L~~n  182 (716)
                      +|+|++|+|++..+..|+++++|++|+|++|.+++..+..|+++++|++|+|++|.+++. .|..++.+++|++|++++|
T Consensus       104 ~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N  183 (635)
T 4g8a_A          104 TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN  183 (635)
T ss_dssp             EEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred             EEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence            999999999988888899999999999999999988888899999999999999999764 5788999999999999999


Q ss_pred             cccccccccccCCCCCc----eeeCCCCC-----cccCCCCccCEEEeeCCcCcccCC----------------------
Q 041300          183 SLSGSILTNIGNLKFLF----ELDLSFLP-----LSVGNLTNLKSLGLMDNHLSGSIP----------------------  231 (716)
Q Consensus       183 ~l~~~~~~~l~~l~~L~----~L~l~~~~-----~~~~~l~~L~~L~l~~n~l~~~~~----------------------  231 (716)
                      ++++..+..+..+..++    .++++..+     ........++.+++.+|......+                      
T Consensus       184 ~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~  263 (635)
T 4g8a_A          184 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN  263 (635)
T ss_dssp             CCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTT
T ss_pred             cccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccc
Confidence            99988887777665543    45554432     233334455666666654321100                      


Q ss_pred             ---------Ccccc----------------------------ccccEEEccCCcCccccCccccCCCCccEEEecCCccc
Q 041300          232 ---------PSFGN----------------------------SMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQ  274 (716)
Q Consensus       232 ---------~~~~~----------------------------~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  274 (716)
                               ..+..                            ..++.+++.++.+...  ..+.....++.|++.+|.+.
T Consensus       264 ~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~  341 (635)
T 4g8a_A          264 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFG  341 (635)
T ss_dssp             SCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEES
T ss_pred             ccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhccccccc
Confidence                     00000                            0233333333333222  12233445566666666655


Q ss_pred             ccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCcccc--ccCCCCCCCCCCCEEEcccCcCcccCccc
Q 041300          275 GTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYG--EISSNWGKCPKLGTLNVSMNNITGGIPRE  352 (716)
Q Consensus       275 ~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  352 (716)
                      ...+.   .+..|+.+.+..|.+....  ....+++|+.+++++|.+..  ..+..+..+.+|+.|++..|.+.. .+..
T Consensus       342 ~~~~~---~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~  415 (635)
T 4g8a_A          342 QFPTL---KLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSN  415 (635)
T ss_dssp             SCCCC---BCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSC
T ss_pred             CcCcc---cchhhhhcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-cccc
Confidence            43332   3445666666666554332  23356778888888887754  234445567778888888777764 3456


Q ss_pred             ccCCCCCCEEEccCCccccccC-cccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcC-CccCchhhcCcCC
Q 041300          353 IGNMSQLQALDLSLNHIVGEIP-KELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKF-NNSVPESLGNLLK  430 (716)
Q Consensus       353 ~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~  430 (716)
                      +..+++|+.++++.|......+ ..+..+++++.++++.|.+.+..+..+..++.|+.|+|++|.+ .+..|..|..+++
T Consensus       416 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~  495 (635)
T 4g8a_A          416 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN  495 (635)
T ss_dssp             CTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred             ccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccc
Confidence            7778888888888877765443 4577888888899999988888888888888899999988874 3456778888888


Q ss_pred             CCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCCcCC-CCCCEEEcc
Q 041300          431 LHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGM-HGLSIIDIS  509 (716)
Q Consensus       431 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~-~~L~~l~ls  509 (716)
                      |++|+|++|++++..|..|.++++|++|+|++|++++..|..|..+++|+.|++++|+|++..|+.|..+ ++|++|+++
T Consensus       496 L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~  575 (635)
T 4g8a_A          496 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT  575 (635)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECT
T ss_pred             cCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEee
Confidence            9999999999888888888888899999999999888888888888899999999999988888888887 578999999


Q ss_pred             CCcccccCC
Q 041300          510 DNQLQGPVP  518 (716)
Q Consensus       510 ~N~l~~~~p  518 (716)
                      +|++.+...
T Consensus       576 ~Np~~C~C~  584 (635)
T 4g8a_A          576 QNDFACTCE  584 (635)
T ss_dssp             TCCBCCSGG
T ss_pred             CCCCcccCC
Confidence            999887654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=4.3e-46  Score=415.01  Aligned_cols=431  Identities=20%  Similarity=0.216  Sum_probs=253.8

Q ss_pred             EEEEcCCCCCccccCCCCCCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEccc
Q 041300           54 TNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQF  133 (716)
Q Consensus        54 ~~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~  133 (716)
                      +.|+++++++. .++. .+.  ++|++|||++|.+.+..|..|.++++|++|+|++|.+++..|..|+.+++|++|+|++
T Consensus         3 ~~l~ls~n~l~-~ip~-~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~   78 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVPK-DLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH   78 (520)
T ss_dssp             CEEECTTSCCS-SCCC-SCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred             ceEecCCCCcc-cccc-ccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence            46899999998 4643 333  8999999999999988888999999999999999999988899999999999999999


Q ss_pred             ccCccCCCccccCCCCCceeecccccccC-CCCccccCCcCCcEEEeecccccccccccccCCCCCceeeCCCCCcccCC
Q 041300          134 NELDGSIPPEVCQLSSIEELFLYSNHLNG-SLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGN  212 (716)
Q Consensus       134 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~  212 (716)
                      |.++. +|..  .+++|++|+|++|.+++ ..|..|+++++|++|++++|.+++.   .+..++.|              
T Consensus        79 N~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L--------------  138 (520)
T 2z7x_B           79 NKLVK-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---SVLPIAHL--------------  138 (520)
T ss_dssp             SCCCE-EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GGGGGTTS--------------
T ss_pred             Cceee-cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh---hccccccc--------------
Confidence            99984 5555  89999999999999987 4689999999999999999998863   34444433              


Q ss_pred             CCccCEEEeeCCcC--cccCCCccccc--cccEEEccCCcCccccCc-cccCCCCccEEEecCCc-------ccccCCcc
Q 041300          213 LTNLKSLGLMDNHL--SGSIPPSFGNS--MLTWLTLSGNHFTGYLPH-NICRGGLLEAFIVSENH-------FQGTIPES  280 (716)
Q Consensus       213 l~~L~~L~l~~n~l--~~~~~~~~~~~--~L~~L~L~~n~l~~~~~~-~~~~~~~L~~L~l~~n~-------l~~~~p~~  280 (716)
                        +|+.|++++|.+  .+..|..+...  ....+++++|.+.+..+. .+..++.|+.+++++|.       +.+.+| .
T Consensus       139 --~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~  215 (520)
T 2z7x_B          139 --NISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-K  215 (520)
T ss_dssp             --CEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-G
T ss_pred             --eeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-h
Confidence              125555555555  44444444332  133344555554443332 23444555555555554       333333 4


Q ss_pred             cccCCCCcEEEccCCcCCCccchhhC---CCCCCCEEEccCCccccccCCCC-----CCCCCCCEEEcccCcCcccCc-c
Q 041300          281 LRNCTSLIRVRLNGNNLTGNISEALG---LYPNLTFIDLSRNNFYGEISSNW-----GKCPKLGTLNVSMNNITGGIP-R  351 (716)
Q Consensus       281 l~~l~~L~~L~l~~n~l~~~~~~~~~---~~~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~-~  351 (716)
                      +..+++|+.|++++|.+++.....+.   ..++|++|++++|.+++.+|..+     ..+++|+.+++++|.+  .+| .
T Consensus       216 l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~  293 (520)
T 2z7x_B          216 LQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQS  293 (520)
T ss_dssp             GGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTH
T ss_pred             hccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchh
Confidence            44555555555555544432111110   12345555555555554444444     4445555555555544  222 2


Q ss_pred             cc-------------------------cCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccc--cCCcccCCC
Q 041300          352 EI-------------------------GNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTG--RLPTEIGSL  404 (716)
Q Consensus       352 ~~-------------------------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l  404 (716)
                      .+                         ..+++|++|++++|++++..|..+..+++|+.|++++|++++  .+|..+..+
T Consensus       294 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l  373 (520)
T 2z7x_B          294 YIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQM  373 (520)
T ss_dssp             HHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTC
T ss_pred             hhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhC
Confidence            22                         344555555555555554445555555555555555555543  233344555


Q ss_pred             CCCCEEEccCCcCCccCch-hhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEE
Q 041300          405 IELEYLDFSANKFNNSVPE-SLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLN  483 (716)
Q Consensus       405 ~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~  483 (716)
                      ++|++|++++|.+.+.+|. .+..+++|+.|++++|++++..|..+.  ++|+.|++++|+++ .+|..+..+++|+.|+
T Consensus       374 ~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~  450 (520)
T 2z7x_B          374 KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELN  450 (520)
T ss_dssp             TTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEE
T ss_pred             CCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEE
Confidence            5555555555555542332 244455555555555555444443332  34555555555555 3444444555555555


Q ss_pred             CcCCcCcccCCcCCcCCCCCCEEEccCCccccc
Q 041300          484 LSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGP  516 (716)
Q Consensus       484 ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~  516 (716)
                      +++|+++.+.+..|..+++|+.|++++|++++.
T Consensus       451 L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~  483 (520)
T 2z7x_B          451 VASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  483 (520)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCCCcCCccCHHHhccCCcccEEECcCCCCccc
Confidence            555555533323345555555555555555443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.9e-47  Score=434.05  Aligned_cols=452  Identities=20%  Similarity=0.258  Sum_probs=372.8

Q ss_pred             CCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCc------c------cCCccccCCCCCCEEEcccccCccCCCcc
Q 041300           76 PQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLS------G------KIPAEVGLLTHLKVLSFQFNELDGSIPPE  143 (716)
Q Consensus        76 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~------~------~~p~~~~~l~~L~~L~L~~N~l~~~~~~~  143 (716)
                      .+++.|+|++|.+.|.+|.+|+++++|++|+|++|.+.      +      .+|...  +..|+ +++++|.+.+.+|..
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~  157 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED  157 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence            57889999999999999999999999999999999762      2      333333  45677 888888888877766


Q ss_pred             ccCC-------------------CCCceeecc--cccccCCCCccccCCcCCcEEEeeccccccc-ccccccCCCCCcee
Q 041300          144 VCQL-------------------SSIEELFLY--SNHLNGSLPPFLGNLSNIVRLYINNNSLSGS-ILTNIGNLKFLFEL  201 (716)
Q Consensus       144 ~~~l-------------------~~L~~L~L~--~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L  201 (716)
                      +..+                   ..++.+.+.  +|.+++ +|..|+++++|++|+|++|.+++. ++..... ... ..
T Consensus       158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~-~~~-~~  234 (636)
T 4eco_A          158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWEN-ENS-EY  234 (636)
T ss_dssp             SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSC-TTS-HH
T ss_pred             HHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccc-ccc-ch
Confidence            6521                   123333333  688998 899999999999999999999974 1111000 000 00


Q ss_pred             eCCCCCcccC--CCCccCEEEeeCCcCcccCCCccccc-cccEEEccCCc-Ccc-ccCccccCC------CCccEEEecC
Q 041300          202 DLSFLPLSVG--NLTNLKSLGLMDNHLSGSIPPSFGNS-MLTWLTLSGNH-FTG-YLPHNICRG------GLLEAFIVSE  270 (716)
Q Consensus       202 ~l~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~-l~~-~~~~~~~~~------~~L~~L~l~~  270 (716)
                      ..+.+|..+.  ++++|++|++++|.+.+.+|..+... +|++|++++|. +++ .+|..+..+      +.|+.|++++
T Consensus       235 ~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~  314 (636)
T 4eco_A          235 AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY  314 (636)
T ss_dssp             HHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS
T ss_pred             hcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCC
Confidence            0001455666  77799999999999999999888765 89999999998 998 888888776      8999999999


Q ss_pred             CcccccCCc--ccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCC-CCEEEcccCcCcc
Q 041300          271 NHFQGTIPE--SLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPK-LGTLNVSMNNITG  347 (716)
Q Consensus       271 n~l~~~~p~--~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~  347 (716)
                      |+++ .+|.  .+.++++|+.|++++|+++|.+| .+..+++|++|++++|.++ .+|..+..+++ |++|++++|+++ 
T Consensus       315 n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-  390 (636)
T 4eco_A          315 NNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-  390 (636)
T ss_dssp             SCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-
T ss_pred             CcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-
Confidence            9999 7888  89999999999999999998888 8899999999999999999 77888999999 999999999999 


Q ss_pred             cCcccccCCC--CCCEEEccCCccccccCcccC-------CCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCC
Q 041300          348 GIPREIGNMS--QLQALDLSLNHIVGEIPKELG-------KLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFN  418 (716)
Q Consensus       348 ~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~-------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  418 (716)
                      .+|..+..++  +|++|++++|.+++..|..+.       .+++|+.|++++|+++...+..+..+++|++|+|++|.++
T Consensus       391 ~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~  470 (636)
T 4eco_A          391 YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT  470 (636)
T ss_dssp             SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred             ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC
Confidence            7788877755  899999999999999998888       7889999999999999544444567999999999999999


Q ss_pred             ccCchhhcCc-------CCCCEEECcCCcCcccCChhhh--CCCCCCEEECCCCcCccccchhccCCCCCCEEEC-----
Q 041300          419 NSVPESLGNL-------LKLHYLGLSNNQFVLELPKELE--KLVQLSELDASHNLFGGEIPFQICSLKSLEKLNL-----  484 (716)
Q Consensus       419 ~~~~~~~~~l-------~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l-----  484 (716)
                      ...+..+...       ++|+.|+|++|+++ .+|..+.  .+++|+.|++++|++++ +|..+..+++|+.|++     
T Consensus       471 ~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~  548 (636)
T 4eco_A          471 EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRD  548 (636)
T ss_dssp             BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBC
T ss_pred             CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcc
Confidence            4444444433       39999999999999 6888886  99999999999999997 8999999999999999     


Q ss_pred             -cCCcCcccCCcCCcCCCCCCEEEccCCcccccCCCccccCCCCcccccCCCCCCCCC
Q 041300          485 -SHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGV  541 (716)
Q Consensus       485 -s~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~~c~~~  541 (716)
                       ++|++.+.+|..+..+++|+.|++++|++ +.+|.. .+.......+.+|+..|...
T Consensus       549 ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~-~~~~L~~L~Ls~N~l~~~~~  604 (636)
T 4eco_A          549 AQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK-ITPNISVLDIKDNPNISIDL  604 (636)
T ss_dssp             TTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCTTCCEEECCSCTTCEEEC
T ss_pred             cccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh-HhCcCCEEECcCCCCccccH
Confidence             56888999999999999999999999999 666654 23566677778888777543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2e-45  Score=423.81  Aligned_cols=449  Identities=20%  Similarity=0.243  Sum_probs=334.4

Q ss_pred             CCCcEEECCCCCccccCcccccCCCCCCEEEC-cCCcCcccCCccccCC-CCCC-----EEEc----------ccccCcc
Q 041300           76 PQLVHLDLSLNGFFGTIPSQIGNLTKLSYISL-DSNQLSGKIPAEVGLL-THLK-----VLSF----------QFNELDG  138 (716)
Q Consensus        76 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L-s~N~l~~~~p~~~~~l-~~L~-----~L~L----------~~N~l~~  138 (716)
                      .+++.|+|++|.+.|.+|.+|++|++|++|+| ++|.+.|..|-..... ..+.     .+..          ....+..
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            57889999999999999999999999999999 8898877644221111 0000     0000          0000100


Q ss_pred             -----------CCCccccCCCCCceeeccc--ccccCCCCccccCCcCCcEEEeeccccccc-ccccccCCCCCceeeCC
Q 041300          139 -----------SIPPEVCQLSSIEELFLYS--NHLNGSLPPFLGNLSNIVRLYINNNSLSGS-ILTNIGNLKFLFELDLS  204 (716)
Q Consensus       139 -----------~~~~~~~~l~~L~~L~L~~--N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~  204 (716)
                                 ..+........++.+.+..  |.+++ +|..|+++++|+.|+|++|.+++. ++..+..... ..+ -.
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~-n~~-~g  479 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANS-DYA-KQ  479 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTS-HHH-HH
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCccccccccccc-ccc-cc
Confidence                       0111112333455555554  78887 788888888888888888888872 1111110000 000 01


Q ss_pred             CCCcccC--CCCccCEEEeeCCcCcccCCCccccc-cccEEEccCCc-Ccc-ccCccccCC-------CCccEEEecCCc
Q 041300          205 FLPLSVG--NLTNLKSLGLMDNHLSGSIPPSFGNS-MLTWLTLSGNH-FTG-YLPHNICRG-------GLLEAFIVSENH  272 (716)
Q Consensus       205 ~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~-l~~-~~~~~~~~~-------~~L~~L~l~~n~  272 (716)
                      .+|..+.  ++++|++|+|++|.+.+.+|..+... +|+.|++++|+ +++ .+|..+..+       +.|+.|++++|+
T Consensus       480 ~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~  559 (876)
T 4ecn_A          480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN  559 (876)
T ss_dssp             HTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred             cCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence            1234444  66688888888888888888777654 78889999887 887 677655544       489999999999


Q ss_pred             ccccCCc--ccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCC-CCEEEcccCcCcccC
Q 041300          273 FQGTIPE--SLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPK-LGTLNVSMNNITGGI  349 (716)
Q Consensus       273 l~~~~p~--~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~  349 (716)
                      ++ .+|.  .+.++++|+.|++++|+++ .+| .+..+++|+.|+|++|.+. .+|..+..+++ |+.|+|++|+++ .+
T Consensus       560 L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~l  634 (876)
T 4ecn_A          560 LE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YI  634 (876)
T ss_dssp             CC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SC
T ss_pred             CC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cC
Confidence            99 7787  8999999999999999998 556 8888999999999999998 77778888998 999999999998 67


Q ss_pred             cccccCCCC--CCEEEccCCccccccCccc---C--CCCCCcEEEccCCcccccCCccc-CCCCCCCEEEccCCcCCccC
Q 041300          350 PREIGNMSQ--LQALDLSLNHIVGEIPKEL---G--KLNSLTKLILRGNQLTGRLPTEI-GSLIELEYLDFSANKFNNSV  421 (716)
Q Consensus       350 ~~~~~~l~~--L~~L~L~~n~l~~~~~~~~---~--~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~  421 (716)
                      |..+..++.  |+.|++++|++.+.+|...   .  .+++|+.|+|++|+++ .+|..+ ..+++|+.|+|++|.+. .+
T Consensus       635 p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~i  712 (876)
T 4ecn_A          635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SI  712 (876)
T ss_dssp             CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CC
T ss_pred             chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-cc
Confidence            777777654  9999999999987665332   2  3458999999999998 455554 58899999999999998 45


Q ss_pred             chhhcC--------cCCCCEEECcCCcCcccCChhhh--CCCCCCEEECCCCcCccccchhccCCCCCCEEECcC-----
Q 041300          422 PESLGN--------LLKLHYLGLSNNQFVLELPKELE--KLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSH-----  486 (716)
Q Consensus       422 ~~~~~~--------l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~-----  486 (716)
                      |..+..        +++|+.|+|++|+++ .+|..+.  .+++|+.|+|++|.+++ +|..+..+++|+.|+|++     
T Consensus       713 p~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls  790 (876)
T 4ecn_A          713 PENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAE  790 (876)
T ss_dssp             CTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTT
T ss_pred             ChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcc
Confidence            544332        238999999999998 6788886  89999999999999997 788889999999999976     


Q ss_pred             -CcCcccCCcCCcCCCCCCEEEccCCcccccCCCccccCCCCcccccCCCCCC
Q 041300          487 -NNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNSTAFRNAPVEALEGNKELC  538 (716)
Q Consensus       487 -N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~~c  538 (716)
                       |++.+.+|..|..+++|+.|++++|++ +.+|.. .+.......+.+|+...
T Consensus       791 ~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~-l~~~L~~LdLs~N~l~~  841 (876)
T 4ecn_A          791 GNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK-LTPQLYILDIADNPNIS  841 (876)
T ss_dssp             CCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCSSSCEEECCSCTTCE
T ss_pred             cccccccChHHHhcCCCCCEEECCCCCC-CccCHh-hcCCCCEEECCCCCCCc
Confidence             888999999999999999999999999 677765 23455666677776544

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1e-45  Score=412.04  Aligned_cols=429  Identities=20%  Similarity=0.182  Sum_probs=361.1

Q ss_pred             CCEEEEEcCCCCCccccCCCCCCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEE
Q 041300           51 GRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLS  130 (716)
Q Consensus        51 ~~v~~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  130 (716)
                      .+++.|++++|.+.+ +.+..|..+++|++|+|++|++.+..|..|.++++|++|+|++|.++ .+|..  .+++|++|+
T Consensus        21 ~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~   96 (520)
T 2z7x_B           21 QKTTILNISQNYISE-LWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLD   96 (520)
T ss_dssp             TTCSEEECCSSCCCC-CCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEE
T ss_pred             ccccEEECCCCcccc-cChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEe
Confidence            579999999999985 33457899999999999999999999999999999999999999999 45655  899999999


Q ss_pred             cccccCcc-CCCccccCCCCCceeecccccccCCCCccccCCcCC--cEEEeecccc--cccccccccCCCC-CceeeCC
Q 041300          131 FQFNELDG-SIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNI--VRLYINNNSL--SGSILTNIGNLKF-LFELDLS  204 (716)
Q Consensus       131 L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L--~~L~L~~n~l--~~~~~~~l~~l~~-L~~L~l~  204 (716)
                      |++|.+++ .+|..|+++++|++|++++|.+++   ..|..+++|  +.|++++|.+  ++..|..+..+.. ...++++
T Consensus        97 L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~  173 (520)
T 2z7x_B           97 LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP  173 (520)
T ss_dssp             CCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECC
T ss_pred             ccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEec
Confidence            99999997 478999999999999999999986   467888888  9999999999  7788888877663 1223333


Q ss_pred             C-------CCcccCCCCccCEEEeeCCc-------CcccCCCccccccccEEEccCCcCccccCcccc---CCCCccEEE
Q 041300          205 F-------LPLSVGNLTNLKSLGLMDNH-------LSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNIC---RGGLLEAFI  267 (716)
Q Consensus       205 ~-------~~~~~~~l~~L~~L~l~~n~-------l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~---~~~~L~~L~  267 (716)
                      .       .+..+.++++|+.|++++|.       +.+.+|.......|+.|++++|.+++..+..+.   ..+.|+.|+
T Consensus       174 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~  253 (520)
T 2z7x_B          174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS  253 (520)
T ss_dssp             SSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEE
T ss_pred             cCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEE
Confidence            2       23356789999999999997       666555333445899999999988764332221   245899999


Q ss_pred             ecCCcccccCCccc-----ccCCCCcEEEccCCcCCCccchhhCCC---CCCCEEEccCCccccccCCCCCCCCCCCEEE
Q 041300          268 VSENHFQGTIPESL-----RNCTSLIRVRLNGNNLTGNISEALGLY---PNLTFIDLSRNNFYGEISSNWGKCPKLGTLN  339 (716)
Q Consensus       268 l~~n~l~~~~p~~l-----~~l~~L~~L~l~~n~l~~~~~~~~~~~---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  339 (716)
                      +++|++.+.+|..+     .++++|+.+++++|.+ ..+...+..+   ++|+.|++++|.+....  .+..+++|++|+
T Consensus       254 l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~  330 (520)
T 2z7x_B          254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLD  330 (520)
T ss_dssp             EEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEE
T ss_pred             eecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEE
Confidence            99999999999988     8999999999999999 3332444333   67999999999987542  126889999999


Q ss_pred             cccCcCcccCcccccCCCCCCEEEccCCcccc--ccCcccCCCCCCcEEEccCCcccccCCc-ccCCCCCCCEEEccCCc
Q 041300          340 VSMNNITGGIPREIGNMSQLQALDLSLNHIVG--EIPKELGKLNSLTKLILRGNQLTGRLPT-EIGSLIELEYLDFSANK  416 (716)
Q Consensus       340 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~  416 (716)
                      +++|++++..|..+..+++|++|++++|++++  .+|..+..+++|+.|++++|++++.+|. .+..+++|+.|++++|.
T Consensus       331 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~  410 (520)
T 2z7x_B          331 FSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI  410 (520)
T ss_dssp             CCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSC
T ss_pred             eECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCC
Confidence            99999999899999999999999999999996  5567899999999999999999984555 48889999999999999


Q ss_pred             CCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCccc
Q 041300          417 FNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGL  492 (716)
Q Consensus       417 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~  492 (716)
                      +++..|..+.  ++|+.|++++|+++ .+|..+..+++|++|++++|+++...+..+..+++|+.|++++|++++.
T Consensus       411 l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~  483 (520)
T 2z7x_B          411 LTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  483 (520)
T ss_dssp             CCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCccc
Confidence            9887776654  79999999999999 7888888999999999999999954444489999999999999999864

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2.4e-42  Score=394.84  Aligned_cols=487  Identities=21%  Similarity=0.178  Sum_probs=374.6

Q ss_pred             CCcceeeeeeCCCCCEEEEEcCCCCCccccCCCCCCCC-CCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccC
Q 041300           38 SPCAWYGISCNDAGRVTNISLRNTGLSGTLRDFSFSSF-PQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKI  116 (716)
Q Consensus        38 ~~c~w~gv~c~~~~~v~~l~l~~~~l~~~~~~~~f~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  116 (716)
                      -|..|..-.|...+  +.++-++.+++ .++.    .+ +.+++|||++|+|+++.+.+|.++++|++|+|++|.|+++.
T Consensus        20 ~p~~~~~c~~~~~~--~~~~c~~~~l~-~vP~----~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~   92 (635)
T 4g8a_A           20 IPESWEPCVEVVPN--ITYQCMELNFY-KIPD----NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE   92 (635)
T ss_dssp             -----CCSEEEETT--TEEECTTSCCS-SCCS----SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred             CCCCCCCccccCCC--CEEECCCCCcC-ccCC----CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcC
Confidence            47788765554322  34678888886 4432    23 37999999999999999999999999999999999999888


Q ss_pred             CccccCCCCCCEEEcccccCccCCCccccCCCCCceeecccccccCCCCccccCCcCCcEEEeeccccccc-ccccccCC
Q 041300          117 PAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGS-ILTNIGNL  195 (716)
Q Consensus       117 p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l  195 (716)
                      |.+|+++++|++|+|++|++++..+..|.++++|++|+|++|.+++..+..|+++++|++|+|++|.+++. .+..+..+
T Consensus        93 ~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l  172 (635)
T 4g8a_A           93 DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL  172 (635)
T ss_dssp             TTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGC
T ss_pred             hhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccc
Confidence            88999999999999999999988888999999999999999999998888999999999999999999864 57788899


Q ss_pred             CCCceeeCCCCC------cccCCCCc----cCEEEeeCCcCcccCCCccccccccEEEccCCcCcccc-CccccCCC---
Q 041300          196 KFLFELDLSFLP------LSVGNLTN----LKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYL-PHNICRGG---  261 (716)
Q Consensus       196 ~~L~~L~l~~~~------~~~~~l~~----L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~~~---  261 (716)
                      +.|++|+++...      ..+..+.+    ...++++.|.+....+..+....+..+++.+|...... +..+..+.   
T Consensus       173 ~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~  252 (635)
T 4g8a_A          173 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLE  252 (635)
T ss_dssp             TTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCE
T ss_pred             hhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccc
Confidence            999999988643      33333332    44788889998877777776667777888777543211 11112222   


Q ss_pred             ------------------------------------------------------CccEEEecCCcccccCCcccccCCCC
Q 041300          262 ------------------------------------------------------LLEAFIVSENHFQGTIPESLRNCTSL  287 (716)
Q Consensus       262 ------------------------------------------------------~L~~L~l~~n~l~~~~p~~l~~l~~L  287 (716)
                                                                            .++.+.+..+.+....  .+..+..|
T Consensus       253 ~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L  330 (635)
T 4g8a_A          253 VHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGW  330 (635)
T ss_dssp             EEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCC
T ss_pred             cccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc--ccccchhh
Confidence                                                                  2233333333332211  23334455


Q ss_pred             cEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcc--cCcccccCCCCCCEEEcc
Q 041300          288 IRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITG--GIPREIGNMSQLQALDLS  365 (716)
Q Consensus       288 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~  365 (716)
                      +.|++.+|.+......   .++.|+.++++.|.+...  ..+..+++|+.|+++.|.+..  ..+..+..+.+|+.+++.
T Consensus       331 ~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~  405 (635)
T 4g8a_A          331 QHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLS  405 (635)
T ss_dssp             SEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECC
T ss_pred             hhhhcccccccCcCcc---cchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhcc
Confidence            5666666555543332   245566666666655432  234467889999999988753  345566778889999999


Q ss_pred             CCccccccCcccCCCCCCcEEEccCCcccccCC-cccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCc-c
Q 041300          366 LNHIVGEIPKELGKLNSLTKLILRGNQLTGRLP-TEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFV-L  443 (716)
Q Consensus       366 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~  443 (716)
                      .|.+. ..+..+..+++|+.++++.|+.....+ ..+..+.+++.++++.|.+.+..+..+..++.|+.|++++|.+. +
T Consensus       406 ~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~  484 (635)
T 4g8a_A          406 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN  484 (635)
T ss_dssp             SCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG
T ss_pred             ccccc-cccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccc
Confidence            98887 456678889999999999988775544 45788999999999999999999999999999999999999854 4


Q ss_pred             cCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCcccccCCCcc-c
Q 041300          444 ELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNST-A  522 (716)
Q Consensus       444 ~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~~p~~~-~  522 (716)
                      ..|..|..+++|++|||++|++++..|..|.++++|+.|+|++|+|+++.|..|.++++|++||+++|++++..|..- .
T Consensus       485 ~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~  564 (635)
T 4g8a_A          485 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH  564 (635)
T ss_dssp             EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTC
T ss_pred             cCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHh
Confidence            578889999999999999999999999999999999999999999999999999999999999999999999887642 2


Q ss_pred             c-CCCCcccccCCCCCCC
Q 041300          523 F-RNAPVEALEGNKELCG  539 (716)
Q Consensus       523 ~-~~~~~~~~~~n~~~c~  539 (716)
                      + .......+.+|++.|.
T Consensus       565 l~~~L~~L~L~~Np~~C~  582 (635)
T 4g8a_A          565 FPSSLAFLNLTQNDFACT  582 (635)
T ss_dssp             CCTTCCEEECTTCCBCCS
T ss_pred             hhCcCCEEEeeCCCCccc
Confidence            2 3456677899999994

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.8e-43  Score=397.07  Aligned_cols=450  Identities=19%  Similarity=0.163  Sum_probs=302.1

Q ss_pred             EEEEEcCCCCCccccCCCCCCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcc
Q 041300           53 VTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQ  132 (716)
Q Consensus        53 v~~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  132 (716)
                      .+.++++++++.+ ++.. +  .++|++|||++|.+.+..|.+|.++++|++|+|++|.+++..|..|+.+++|++|+|+
T Consensus        33 ~~~l~ls~~~L~~-ip~~-~--~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  108 (562)
T 3a79_B           33 ESMVDYSNRNLTH-VPKD-L--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS  108 (562)
T ss_dssp             CCEEECTTSCCCS-CCTT-S--CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CcEEEcCCCCCcc-CCCC-C--CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence            3789999999984 5432 3  2899999999999999988999999999999999999999889999999999999999


Q ss_pred             cccCccCCCccccCCCCCceeecccccccCC-CCccccCCcCCcEEEeecccccccccccccCCCCCceeeCCCCC----
Q 041300          133 FNELDGSIPPEVCQLSSIEELFLYSNHLNGS-LPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLP----  207 (716)
Q Consensus       133 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~~~----  207 (716)
                      +|.++. +|..  .+++|++|+|++|.+++. .|..|+++++|++|++++|.+++.....+..+ .|+.|+++...    
T Consensus       109 ~N~l~~-lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L-~L~~L~L~~n~l~~~  184 (562)
T 3a79_B          109 HNRLQN-ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL-HLSCILLDLVSYHIK  184 (562)
T ss_dssp             TSCCCE-ECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTS-CEEEEEEEESSCCCC
T ss_pred             CCcCCc-cCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhc-eeeEEEeeccccccc
Confidence            999984 5555  899999999999999974 46899999999999999999986333332222 22444433221    


Q ss_pred             ----cccCCCC-ccCEEEeeCCcCcccCCCcccc--ccccEEEccCCc-----CccccCccccCCCCccEEEecCCcccc
Q 041300          208 ----LSVGNLT-NLKSLGLMDNHLSGSIPPSFGN--SMLTWLTLSGNH-----FTGYLPHNICRGGLLEAFIVSENHFQG  275 (716)
Q Consensus       208 ----~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~--~~L~~L~L~~n~-----l~~~~~~~~~~~~~L~~L~l~~n~l~~  275 (716)
                          ..+..+. ..-.+++++|.+.+.++.....  ..|+.+++++|.     +.+. ...+..++.++.+++.++.+.+
T Consensus       185 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~-~~~l~~l~~L~~L~L~~~~l~~  263 (562)
T 3a79_B          185 GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF-LSELTRGPTLLNVTLQHIETTW  263 (562)
T ss_dssp             SSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHH-HHHHHSCSSCEEEEEEEEEECH
T ss_pred             ccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHH-HHHHhccCcceEEEecCCcCcH
Confidence                1111111 0112334444444333322111  144455555442     1111 1123334444444444444332


Q ss_pred             cC----CcccccCCCCcEEEccCCcCCCccchhh-----CCCCCCCEEEccCCccccccC-CCCC---CCCCCCEEEccc
Q 041300          276 TI----PESLRNCTSLIRVRLNGNNLTGNISEAL-----GLYPNLTFIDLSRNNFYGEIS-SNWG---KCPKLGTLNVSM  342 (716)
Q Consensus       276 ~~----p~~l~~l~~L~~L~l~~n~l~~~~~~~~-----~~~~~L~~L~Ls~n~l~~~~~-~~~~---~l~~L~~L~L~~  342 (716)
                      ..    +.. ...++|++|++++|.+++.+|..+     ..++.|+.++++.|.+  .+| ..+.   ...+|+.|++++
T Consensus       264 ~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~  340 (562)
T 3a79_B          264 KCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISD  340 (562)
T ss_dssp             HHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEES
T ss_pred             HHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccC
Confidence            11    111 112356666666666665555444     3334444444444443  112 1111   124577788887


Q ss_pred             CcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCccccc--CCcccCCCCCCCEEEccCCcCCcc
Q 041300          343 NNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGR--LPTEIGSLIELEYLDFSANKFNNS  420 (716)
Q Consensus       343 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~  420 (716)
                      |.+....  ....+++|++|++++|++++..|..+..+++|+.|++++|++++.  .|..+..+++|++|++++|.+++.
T Consensus       341 n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~  418 (562)
T 3a79_B          341 TPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSH  418 (562)
T ss_dssp             SCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSC
T ss_pred             CCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCc
Confidence            7775332  125778888888888888877788888888888888888888753  345678888888888888888873


Q ss_pred             Cc-hhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCCcC
Q 041300          421 VP-ESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEG  499 (716)
Q Consensus       421 ~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~  499 (716)
                      +| ..+..+++|++|++++|++++..|..+.  ++|++|++++|+++ .+|..+..+++|+.|++++|+|+.+.+..|..
T Consensus       419 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~  495 (562)
T 3a79_B          419 AYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDR  495 (562)
T ss_dssp             CSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTT
T ss_pred             cChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhc
Confidence            44 4577788888888888888766655443  57888888888887 56666668888888888888888655455888


Q ss_pred             CCCCCEEEccCCcccccCCC
Q 041300          500 MHGLSIIDISDNQLQGPVPN  519 (716)
Q Consensus       500 ~~~L~~l~ls~N~l~~~~p~  519 (716)
                      +++|+.|++++|++.|.++.
T Consensus       496 l~~L~~L~l~~N~~~c~c~~  515 (562)
T 3a79_B          496 LTSLQYIWLHDNPWDCTCPG  515 (562)
T ss_dssp             CTTCCCEECCSCCBCCCHHH
T ss_pred             CCCCCEEEecCCCcCCCcch
Confidence            88888888888888876553

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.3e-41  Score=372.31  Aligned_cols=372  Identities=20%  Similarity=0.170  Sum_probs=284.1

Q ss_pred             CCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccC-CccccCCCCCCEEEcccccCccCCCccccCCCCCceee
Q 041300           76 PQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKI-PAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELF  154 (716)
Q Consensus        76 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  154 (716)
                      ++|++|||++|.+.+..|..|.++++|++|+|++|.+.+.+ |..|..+++|++|+|++|.+++..|..|.++++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            68999999999999888999999999999999999987444 66789999999999999999988899999999999999


Q ss_pred             cccccccCCCCcc--ccCCcCCcEEEeecccccccccccccCCCCCceeeCCCCCcccCCCCccCEEEeeCCcCcccCCC
Q 041300          155 LYSNHLNGSLPPF--LGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPP  232 (716)
Q Consensus       155 L~~N~l~~~~p~~--~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  232 (716)
                      |++|.+++..|..  |.++++|++|+|++|.+++..+..+                 +.++++|++|++++|.+.+..+.
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----------------~~~l~~L~~L~L~~n~l~~~~~~  172 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF-----------------FLNMRRFHVLDLTFNKVKSICEE  172 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGG-----------------GGGCTTCCEEECTTCCBSCCCTT
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccc-----------------cCCCCcccEEeCCCCcccccChh
Confidence            9999998755544  8889999999999998886554431                 33445788888888888877776


Q ss_pred             cccc---ccccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCC--
Q 041300          233 SFGN---SMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGL--  307 (716)
Q Consensus       233 ~~~~---~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~--  307 (716)
                      .+..   ..++.|++++|.+.+..+..+..                .....+..+++|+.|++++|++++..+..+..  
T Consensus       173 ~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~----------------~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~  236 (455)
T 3v47_A          173 DLLNFQGKHFTLLRLSSITLQDMNEYWLGW----------------EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAI  236 (455)
T ss_dssp             TSGGGTTCEEEEEECTTCBCTTCSTTCTTH----------------HHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHT
T ss_pred             hhhccccccccccccccCcccccchhhccc----------------cccccccccceeeeEecCCCcccccchhhhhccc
Confidence            6644   36777777777776544332210                00112234566777777777777666555433  


Q ss_pred             -CCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCccccc--CCCCCCEEEccCCccccccCcccCCCCCCc
Q 041300          308 -YPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIG--NMSQLQALDLSLNHIVGEIPKELGKLNSLT  384 (716)
Q Consensus       308 -~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  384 (716)
                       .++|+.|++++|.+.+...              ..+.+....+..+.  ..++|++|++++|.+.+..|..+..+++|+
T Consensus       237 ~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~  302 (455)
T 3v47_A          237 AGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLE  302 (455)
T ss_dssp             TTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             cccceeeEeecccccccccc--------------chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCC
Confidence             2677777777776553211              11122222222222  236788888888888888888888888888


Q ss_pred             EEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCc
Q 041300          385 KLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNL  464 (716)
Q Consensus       385 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~  464 (716)
                      .|++++|++++..|..+..+++|++|+|++|.+++..|..|.++++|++|+|++|++++..|..+..+++|++|++++|+
T Consensus       303 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  382 (455)
T 3v47_A          303 QLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ  382 (455)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc
Confidence            88888888888778888888889999999998888778888888999999999999988888888889999999999999


Q ss_pred             CccccchhccCCCCCCEEECcCCcCcccCC
Q 041300          465 FGGEIPFQICSLKSLEKLNLSHNNLSGLIP  494 (716)
Q Consensus       465 l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~  494 (716)
                      +++..+..+..+++|+.|++++|++++..|
T Consensus       383 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          383 LKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             cccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            987777778889999999999999987765

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=8.8e-42  Score=383.44  Aligned_cols=429  Identities=20%  Similarity=0.148  Sum_probs=343.2

Q ss_pred             CCEEEEEcCCCCCccccCCCCCCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEE
Q 041300           51 GRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLS  130 (716)
Q Consensus        51 ~~v~~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  130 (716)
                      ..++.|++++|.+.+ +.+.+|..+++|++|+|++|.+.++.|.+|.++++|++|+|++|.++ .+|..  .+++|++|+
T Consensus        52 ~~L~~L~Ls~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~  127 (562)
T 3a79_B           52 PRTKALSLSQNSISE-LRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLD  127 (562)
T ss_dssp             TTCCEEECCSSCCCC-CCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEE
T ss_pred             CCcCEEECCCCCccc-cChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEE
Confidence            579999999999984 44678999999999999999999999999999999999999999999 56655  899999999


Q ss_pred             cccccCccC-CCccccCCCCCceeecccccccCCCCccccCCcCC--cEEEeecccc--cccccccccCCCCCce--eeC
Q 041300          131 FQFNELDGS-IPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNI--VRLYINNNSL--SGSILTNIGNLKFLFE--LDL  203 (716)
Q Consensus       131 L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L--~~L~L~~n~l--~~~~~~~l~~l~~L~~--L~l  203 (716)
                      |++|.+++. +|..|.++++|++|++++|.+++.   .|..+++|  +.|++++|.+  ++..+..+..+.. +.  +++
T Consensus       128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~-~~l~l~l  203 (562)
T 3a79_B          128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNT-TVLHLVF  203 (562)
T ss_dssp             CCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCE-EEEEEEE
T ss_pred             CCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCc-ceEEEEe
Confidence            999999974 468999999999999999999863   45556666  9999999999  8888888877652 22  233


Q ss_pred             CC-------CCcccCCCCccCEEEeeCCcC-----cccCCCccccccccEEEccCCcCccccCcc---ccCCCCccEEEe
Q 041300          204 SF-------LPLSVGNLTNLKSLGLMDNHL-----SGSIPPSFGNSMLTWLTLSGNHFTGYLPHN---ICRGGLLEAFIV  268 (716)
Q Consensus       204 ~~-------~~~~~~~l~~L~~L~l~~n~l-----~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---~~~~~~L~~L~l  268 (716)
                      +.       ....+..+++|+.+++++|..     .+.++.......++.|+++++.+.+.....   ......|+.|++
T Consensus       204 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l  283 (562)
T 3a79_B          204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI  283 (562)
T ss_dssp             CSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEE
T ss_pred             cCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEE
Confidence            32       123456788999999999852     111111112235777777777665421111   112358999999


Q ss_pred             cCCcccccCCccc-----ccCCCCcEEEccCCcCCCccchhhCC---CCCCCEEEccCCccccccCCCCCCCCCCCEEEc
Q 041300          269 SENHFQGTIPESL-----RNCTSLIRVRLNGNNLTGNISEALGL---YPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNV  340 (716)
Q Consensus       269 ~~n~l~~~~p~~l-----~~l~~L~~L~l~~n~l~~~~~~~~~~---~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  340 (716)
                      ++|.+.+.+|..+     .+++.|+.+++..+.+ ..+...+..   ..+|++|++++|.+....  ....+++|++|++
T Consensus       284 ~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l  360 (562)
T 3a79_B          284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNF  360 (562)
T ss_dssp             EEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEEC
T ss_pred             eccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEEC
Confidence            9999999898887     7777777777777777 222222221   267999999999986432  1267899999999


Q ss_pred             ccCcCcccCcccccCCCCCCEEEccCCccccc--cCcccCCCCCCcEEEccCCcccccCCc-ccCCCCCCCEEEccCCcC
Q 041300          341 SMNNITGGIPREIGNMSQLQALDLSLNHIVGE--IPKELGKLNSLTKLILRGNQLTGRLPT-EIGSLIELEYLDFSANKF  417 (716)
Q Consensus       341 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l  417 (716)
                      ++|++++..|..+..+++|++|++++|++++.  .|..+..+++|+.|++++|++++.+|. .+..+++|++|++++|.+
T Consensus       361 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l  440 (562)
T 3a79_B          361 TQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML  440 (562)
T ss_dssp             CSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCC
T ss_pred             CCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCC
Confidence            99999998999999999999999999999863  356789999999999999999984554 588999999999999999


Q ss_pred             CccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccC
Q 041300          418 NNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLI  493 (716)
Q Consensus       418 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~  493 (716)
                      ++..|..+.  ++|++|++++|+++ .+|..+..+++|++|++++|+++...+..+..+++|+.|++++|.+.+..
T Consensus       441 ~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c  513 (562)
T 3a79_B          441 TGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC  513 (562)
T ss_dssp             CGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCH
T ss_pred             Ccchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCc
Confidence            877766554  69999999999998 67777779999999999999999544444899999999999999998643

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=2.6e-41  Score=370.04  Aligned_cols=369  Identities=21%  Similarity=0.194  Sum_probs=282.0

Q ss_pred             CCCCEEECcCCcCcccCCccccCCCCCCEEEcccccCccC-CCccccCCCCCceeecccccccCCCCccccCCcCCcEEE
Q 041300          100 TKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGS-IPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLY  178 (716)
Q Consensus       100 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  178 (716)
                      ++|++|+|++|.+++..|..|+.+++|++|+|++|.+.+. .+..|.++++|++|+|++|.+++..|..|+++++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            7899999999999988899999999999999999998754 467799999999999999999999999999999999999


Q ss_pred             eecccccccccccccCCCCCceeeCCCCCcccCCCCccCEEEeeCCcCcccCCCc-ccc-ccccEEEccCCcCccccCcc
Q 041300          179 INNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPS-FGN-SMLTWLTLSGNHFTGYLPHN  256 (716)
Q Consensus       179 L~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~-~~L~~L~L~~n~l~~~~~~~  256 (716)
                      +++|.+++..+..                ..+..+++|++|++++|.+.+..|.. +.. .+|++|++++|.+++     
T Consensus       110 L~~n~l~~~~~~~----------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-----  168 (455)
T 3v47_A          110 LTQCNLDGAVLSG----------------NFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS-----  168 (455)
T ss_dssp             CTTSCCBTHHHHS----------------STTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC-----
T ss_pred             CCCCCCCccccCc----------------ccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc-----
Confidence            9999988644332                11334457777888888777655543 222 244445544444444     


Q ss_pred             ccCCCCccEEEecCCcccccCCcccccC--CCCcEEEccCCcCCCccchh--------hCCCCCCCEEEccCCccccccC
Q 041300          257 ICRGGLLEAFIVSENHFQGTIPESLRNC--TSLIRVRLNGNNLTGNISEA--------LGLYPNLTFIDLSRNNFYGEIS  326 (716)
Q Consensus       257 ~~~~~~L~~L~l~~n~l~~~~p~~l~~l--~~L~~L~l~~n~l~~~~~~~--------~~~~~~L~~L~Ls~n~l~~~~~  326 (716)
                                         ..+..+..+  .+|+.|++++|.+.+..+..        +..+++|++|++++|.+++..+
T Consensus       169 -------------------~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~  229 (455)
T 3v47_A          169 -------------------ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMA  229 (455)
T ss_dssp             -------------------CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHH
T ss_pred             -------------------cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccch
Confidence                               344444333  45555555555555433322        2234566666666666665554


Q ss_pred             CCCCCC---CCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCC--CCCCcEEEccCCcccccCCccc
Q 041300          327 SNWGKC---PKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGK--LNSLTKLILRGNQLTGRLPTEI  401 (716)
Q Consensus       327 ~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~N~l~~~~~~~~  401 (716)
                      ..+...   ++|+.|++++|.+.+..              +..+.+.+..+..+..  .++|+.|++++|++++..|..+
T Consensus       230 ~~~~~~~~~~~L~~L~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  295 (455)
T 3v47_A          230 KRFFDAIAGTKIQSLILSNSYNMGSS--------------FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVF  295 (455)
T ss_dssp             HHHHHHTTTCCEEEEECTTCTTTSCC--------------TTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTT
T ss_pred             hhhhccccccceeeEeeccccccccc--------------cchhhhccCcccccccccccCceEEEecCccccccchhhc
Confidence            443322   55666666666544321              1111222222222322  3689999999999999999999


Q ss_pred             CCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCE
Q 041300          402 GSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEK  481 (716)
Q Consensus       402 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~  481 (716)
                      ..+++|++|+|++|.+.+..|..|.++++|++|++++|++.+..|..+..+++|++|++++|++++..|..+..+++|++
T Consensus       296 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  375 (455)
T 3v47_A          296 SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKE  375 (455)
T ss_dssp             TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             ccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccE
Confidence            99999999999999999988999999999999999999999888999999999999999999999988999999999999


Q ss_pred             EECcCCcCcccCCcCCcCCCCCCEEEccCCcccccCCCccc
Q 041300          482 LNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNSTA  522 (716)
Q Consensus       482 L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~~p~~~~  522 (716)
                      |++++|++++..+..|..+++|+.|++++|++++.+|....
T Consensus       376 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~  416 (455)
T 3v47_A          376 LALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY  416 (455)
T ss_dssp             EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHH
T ss_pred             EECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchH
Confidence            99999999998888899999999999999999999886543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=2.6e-40  Score=342.13  Aligned_cols=289  Identities=30%  Similarity=0.558  Sum_probs=188.3

Q ss_pred             hHHHHHHHHHHhhcccCCCCCCCCCcCCCCCCCCCCCCcc--eeeeeeCCC---CCEEEEEcCCCCCcc--ccCCCCCCC
Q 041300            2 NEEADALLKWKASLQSHNQSLLPSWTNASTNVSSKISPCA--WYGISCNDA---GRVTNISLRNTGLSG--TLRDFSFSS   74 (716)
Q Consensus         2 ~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~c~--w~gv~c~~~---~~v~~l~l~~~~l~~--~~~~~~f~~   74 (716)
                      ++|++||++||+++ .+|. .+.+|....       +||.  |.||+|+..   ++|+.|+++++++.|  .+ +..|..
T Consensus         5 ~~~~~aL~~~k~~~-~~~~-~l~~W~~~~-------~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~-~~~l~~   74 (313)
T 1ogq_A            5 PQDKQALLQIKKDL-GNPT-TLSSWLPTT-------DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPI-PSSLAN   74 (313)
T ss_dssp             HHHHHHHHHHHHHT-TCCG-GGTTCCTTS-------CTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEEC-CGGGGG
T ss_pred             HHHHHHHHHHHHhc-CCcc-cccCCCCCC-------CCCcCCCcceEeCCCCCCceEEEEECCCCCccCCccc-ChhHhC
Confidence            68999999999999 4554 678896544       8998  999999853   688888888888776  55 346666


Q ss_pred             CCCCcEEECCC-CCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcccccCccCCCccccCCCCCcee
Q 041300           75 FPQLVHLDLSL-NGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEEL  153 (716)
Q Consensus        75 l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  153 (716)
                      +++|++|+|++ |.+.+.+|..|.++++|++|+|++|.+++.+|..|+.+++|++|+|++|.+.+.+|..|..+++|++|
T Consensus        75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  154 (313)
T 1ogq_A           75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI  154 (313)
T ss_dssp             CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred             CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeE
Confidence            77777777763 66666666666666667777766666666666666666666666666666666666666666666666


Q ss_pred             ecccccccCCCCccccCCc-CCcEEEeecccccccccccccCCCCCceeeCCCCCcccCCCCccCEEEeeCCcCcccCCC
Q 041300          154 FLYSNHLNGSLPPFLGNLS-NIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPP  232 (716)
Q Consensus       154 ~L~~N~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  232 (716)
                      +|++|.+++.+|..|..++ +|+.|++++|.+++..                                          |.
T Consensus       155 ~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~------------------------------------------~~  192 (313)
T 1ogq_A          155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI------------------------------------------PP  192 (313)
T ss_dssp             ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEEC------------------------------------------CG
T ss_pred             ECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccC------------------------------------------Ch
Confidence            6666666655565555554 5555555555554433                                          33


Q ss_pred             ccccccccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCC
Q 041300          233 SFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLT  312 (716)
Q Consensus       233 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~  312 (716)
                      .+....|++|++++|.+++                        ..|..+..+++|+.|++++|.+++.++. +..+++|+
T Consensus       193 ~~~~l~L~~L~Ls~N~l~~------------------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~  247 (313)
T 1ogq_A          193 TFANLNLAFVDLSRNMLEG------------------------DASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLN  247 (313)
T ss_dssp             GGGGCCCSEEECCSSEEEE------------------------CCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCC
T ss_pred             HHhCCcccEEECcCCcccC------------------------cCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCC
Confidence            3322223444444444433                        3444455555666666666666554444 55566667


Q ss_pred             EEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCc
Q 041300          313 FIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNH  368 (716)
Q Consensus       313 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  368 (716)
                      +|++++|.+++.+|..+..+++|+.|++++|++++.+|.. ..+++|+.|++++|.
T Consensus       248 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             EEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred             EEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence            7777777766666666666777777777777776666654 666777777777776

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=3.1e-39  Score=350.58  Aligned_cols=387  Identities=22%  Similarity=0.251  Sum_probs=162.2

Q ss_pred             CEEEEEcCCCCCccccCCCCCCCCCCCcEEECCCCCccccCcccccCCCCC-------------CEEECcCCcCcccCCc
Q 041300           52 RVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKL-------------SYISLDSNQLSGKIPA  118 (716)
Q Consensus        52 ~v~~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L-------------~~L~Ls~N~l~~~~p~  118 (716)
                      +++.++++++++ |.+ +.+|+.+++|++|++++|.+.+.+|..++++++|             ++|++++|.+++ +|.
T Consensus        12 ~L~~L~l~~n~l-~~i-P~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~   88 (454)
T 1jl5_A           12 FLQEPLRHSSNL-TEM-PVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPE   88 (454)
T ss_dssp             ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCS
T ss_pred             cchhhhcccCch-hhC-ChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCC
Confidence            455566666665 455 3345666666666666666666666666655543             555666555553 222


Q ss_pred             cccCCCCCCEEEcccccCccCCCccccCCCCCceeecccccccCCCCccccCCcCCcEEEeecccccccccccccCCCCC
Q 041300          119 EVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFL  198 (716)
Q Consensus       119 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  198 (716)
                      .   .++|++|++++|.+++ +|..   +++|++|++++|.+++.. ..   .++|++|++++|.+++ +|         
T Consensus        89 ~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~-~~---~~~L~~L~L~~n~l~~-lp---------  147 (454)
T 1jl5_A           89 L---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALS-DL---PPLLEYLGVSNNQLEK-LP---------  147 (454)
T ss_dssp             C---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCC-SC---CTTCCEEECCSSCCSS-CC---------
T ss_pred             C---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCccc-CC---CCCCCEEECcCCCCCC-Cc---------
Confidence            1   2455555665555554 3322   245555555555555321 11   1455555555555543 21         


Q ss_pred             ceeeCCCCCcccCCCCccCEEEeeCCcCcccCCCccccccccEEEccCCcCccccCccccCCCCccEEEecCCcccccCC
Q 041300          199 FELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIP  278 (716)
Q Consensus       199 ~~L~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p  278 (716)
                                .+.++++|++|++++|.+++ +|...  ..|++|++++|.+++ +| .+..++.|+.|++++|.+++ +|
T Consensus       148 ----------~~~~l~~L~~L~l~~N~l~~-lp~~~--~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~  211 (454)
T 1jl5_A          148 ----------ELQNSSFLKIIDVDNNSLKK-LPDLP--PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LP  211 (454)
T ss_dssp             ----------CCTTCTTCCEEECCSSCCSC-CCCCC--TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CC
T ss_pred             ----------ccCCCCCCCEEECCCCcCcc-cCCCc--ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CC
Confidence                      12334455666666666554 33322  245566666665554 23 35555555555555555553 22


Q ss_pred             cccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCC
Q 041300          279 ESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQ  358 (716)
Q Consensus       279 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  358 (716)
                      ...   ++|+.|++++|.++. +| .+..+++|++|++++|++++. |.   .+++|+.|++++|++++ +|..   +++
T Consensus       212 ~~~---~~L~~L~l~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~N~l~~-l~~~---~~~  278 (454)
T 1jl5_A          212 DLP---LSLESIVAGNNILEE-LP-ELQNLPFLTTIYADNNLLKTL-PD---LPPSLEALNVRDNYLTD-LPEL---PQS  278 (454)
T ss_dssp             CCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSC-CS---CCTTCCEEECCSSCCSC-CCCC---CTT
T ss_pred             CCc---CcccEEECcCCcCCc-cc-ccCCCCCCCEEECCCCcCCcc-cc---cccccCEEECCCCcccc-cCcc---cCc
Confidence            211   355555555555552 22 245555555555555555542 21   12455555555555553 2221   245


Q ss_pred             CCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcC
Q 041300          359 LQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSN  438 (716)
Q Consensus       359 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  438 (716)
                      |+.|++++|++++. |..   .++|+.|++++|++++. +.   ..++|+.|++++|++++ +|..   +++|++|++++
T Consensus       279 L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~i-~~---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~  346 (454)
T 1jl5_A          279 LTFLDVSENIFSGL-SEL---PPNLYYLNASSNEIRSL-CD---LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASF  346 (454)
T ss_dssp             CCEEECCSSCCSEE-SCC---CTTCCEEECCSSCCSEE-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCS
T ss_pred             CCEEECcCCccCcc-cCc---CCcCCEEECcCCcCCcc-cC---CcCcCCEEECCCCcccc-cccc---CCcCCEEECCC
Confidence            55555555555531 111   13455555555555431 11   01345555555555553 3322   34555555555


Q ss_pred             CcCcccCChhhhCCCCCCEEECCCCcCcc--ccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCcccc-
Q 041300          439 NQFVLELPKELEKLVQLSELDASHNLFGG--EIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQG-  515 (716)
Q Consensus       439 N~l~~~~~~~~~~l~~L~~L~ls~N~l~~--~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~-  515 (716)
                      |+++. +|.   .+++|++|++++|++++  .+|..+..        ++.|++.+.+|..   +++|+.||+++|++++ 
T Consensus       347 N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~  411 (454)
T 1jl5_A          347 NHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPEL---PQNLKQLHVETNPLREF  411 (454)
T ss_dssp             SCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC----------------------------
T ss_pred             Ccccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHh--------hhhcccccccccc---cCcCCEEECCCCcCCcc
Confidence            55552 333   24455555555555554  33333221        1223333333331   2678888888888887 


Q ss_pred             -cCC
Q 041300          516 -PVP  518 (716)
Q Consensus       516 -~~p  518 (716)
                       .+|
T Consensus       412 ~~iP  415 (454)
T 1jl5_A          412 PDIP  415 (454)
T ss_dssp             ----
T ss_pred             ccch
Confidence             444

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=7.5e-39  Score=347.61  Aligned_cols=384  Identities=24%  Similarity=0.276  Sum_probs=237.6

Q ss_pred             CCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCC-------------CEEEcccccCccCC
Q 041300           74 SFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHL-------------KVLSFQFNELDGSI  140 (716)
Q Consensus        74 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L-------------~~L~L~~N~l~~~~  140 (716)
                      ..+.|++|++++|.+ +.+|.+|+++++|++|++++|.+.+.+|..++.+++|             ++|++++|.+++. 
T Consensus         9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l-   86 (454)
T 1jl5_A            9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL-   86 (454)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC-
T ss_pred             ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccC-
Confidence            357899999999999 7889899999999999999999999999999988865             8888888887753 


Q ss_pred             CccccCCCCCceeecccccccCCCCccccCCcCCcEEEeecccccccccccccCCCCCceeeCCCCCcccCCCCccCEEE
Q 041300          141 PPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLG  220 (716)
Q Consensus       141 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~L~~L~  220 (716)
                      |..   .++|++|++++|.+++ +|..   +++|++|++++|.+++..     .+                 .++|++|+
T Consensus        87 p~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~-----~~-----------------~~~L~~L~  137 (454)
T 1jl5_A           87 PEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALS-----DL-----------------PPLLEYLG  137 (454)
T ss_dssp             CSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCC-----SC-----------------CTTCCEEE
T ss_pred             CCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCccc-----CC-----------------CCCCCEEE
Confidence            331   3678888888888876 4543   367888888888776311     00                 14788888


Q ss_pred             eeCCcCcccCCCcccc-ccccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCC
Q 041300          221 LMDNHLSGSIPPSFGN-SMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTG  299 (716)
Q Consensus       221 l~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~  299 (716)
                      +++|.+++ +|. +.. .+|++|++++|.+++ +|..   ...|+.|++++|++++ +| .+.++++|+.|++++|++++
T Consensus       138 L~~n~l~~-lp~-~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~  209 (454)
T 1jl5_A          138 VSNNQLEK-LPE-LQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK  209 (454)
T ss_dssp             CCSSCCSS-CCC-CTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS
T ss_pred             CcCCCCCC-Ccc-cCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc
Confidence            88888886 554 443 478888888888876 3433   2478888888888876 45 57888888888888888876


Q ss_pred             ccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCC
Q 041300          300 NISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGK  379 (716)
Q Consensus       300 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  379 (716)
                      .. ..   .++|++|++++|.++ .+| .+..+++|++|++++|++++ +|.   .+++|++|++++|++++ +|..   
T Consensus       210 l~-~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---  275 (454)
T 1jl5_A          210 LP-DL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---  275 (454)
T ss_dssp             CC-CC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---
T ss_pred             CC-CC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---
Confidence            32 21   257888888888887 444 37788888888888888875 333   24778888888888875 4443   


Q ss_pred             CCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCc-CCCCEEECcCCcCcccCChhhhCCCCCCEE
Q 041300          380 LNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNL-LKLHYLGLSNNQFVLELPKELEKLVQLSEL  458 (716)
Q Consensus       380 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  458 (716)
                      +++|+.|++++|++++. |..   .++|+.|++++|.+++. +    .+ ++|++|++++|++++ +|..   +++|++|
T Consensus       276 ~~~L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L  342 (454)
T 1jl5_A          276 PQSLTFLDVSENIFSGL-SEL---PPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIE-LPAL---PPRLERL  342 (454)
T ss_dssp             CTTCCEEECCSSCCSEE-SCC---CTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEE
T ss_pred             cCcCCEEECcCCccCcc-cCc---CCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcccc-cccc---CCcCCEE
Confidence            36788888888888752 211   25788888888888752 2    22 478888888888875 4443   4678888


Q ss_pred             ECCCCcCccccchhccCCCCCCEEECcCCcCcc--cCCcCCcCCCCCCEEEccCCcccccCCCccccCCCCcccccCCCC
Q 041300          459 DASHNLFGGEIPFQICSLKSLEKLNLSHNNLSG--LIPNCFEGMHGLSIIDISDNQLQGPVPNSTAFRNAPVEALEGNKE  536 (716)
Q Consensus       459 ~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~--~~~~~~~~~~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~  536 (716)
                      ++++|++++ +|.   .+++|+.|++++|++++  .+|..+.        +++.|.+.+.+|..  ........+.+|+.
T Consensus       343 ~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~--------~L~~n~~~~~i~~~--~~~L~~L~ls~N~l  408 (454)
T 1jl5_A          343 IASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVE--------DLRMNSHLAEVPEL--PQNLKQLHVETNPL  408 (454)
T ss_dssp             ECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCC--------EEECCC------------------------
T ss_pred             ECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHH--------hhhhcccccccccc--cCcCCEEECCCCcC
Confidence            888888874 554   46788888888888877  4555443        23456666666642  23444555566654


Q ss_pred             C
Q 041300          537 L  537 (716)
Q Consensus       537 ~  537 (716)
                      .
T Consensus       409 ~  409 (454)
T 1jl5_A          409 R  409 (454)
T ss_dssp             -
T ss_pred             C
Confidence            3

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.1e-37  Score=343.03  Aligned_cols=238  Identities=18%  Similarity=0.165  Sum_probs=160.3

Q ss_pred             hhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCC
Q 041300          304 ALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSL  383 (716)
Q Consensus       304 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  383 (716)
                      .|..+++|++|++++|.+.+..+..|..+++|+.|++++|++++..+..+..+++|+.|++++|.+.+..+..|..+++|
T Consensus       123 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L  202 (477)
T 2id5_A          123 MFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRL  202 (477)
T ss_dssp             TTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTC
T ss_pred             HccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCccc
Confidence            33444455555555555555555555566666666666666665555566666777777777777766666666677777


Q ss_pred             cEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCC
Q 041300          384 TKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHN  463 (716)
Q Consensus       384 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N  463 (716)
                      +.|++++|.+.+.+|.......+|+.|+|++|.+++..+..+..+++|+.|+|++|++++..+..|..+++|++|++++|
T Consensus       203 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  282 (477)
T 2id5_A          203 KVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGG  282 (477)
T ss_dssp             CEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSS
T ss_pred             ceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCC
Confidence            77777777666666665555667777777777777555566777777888888888777766777777778888888888


Q ss_pred             cCccccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCcccccCCCccccCCCCcccccCCCCCCCCC
Q 041300          464 LFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGV  541 (716)
Q Consensus       464 ~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~~c~~~  541 (716)
                      ++++..|..|..+++|+.|++++|+|++..+..|..+++|+.|++++|++.+..+....+.......+.++...|..+
T Consensus       283 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p  360 (477)
T 2id5_A          283 QLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATP  360 (477)
T ss_dssp             CCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEES
T ss_pred             ccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCc
Confidence            887777777888888888888888888777777777888888888888887655433222222223345556666543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=4.1e-37  Score=337.01  Aligned_cols=345  Identities=27%  Similarity=0.393  Sum_probs=188.1

Q ss_pred             CCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcccccCccCCCccccCCCCCceee
Q 041300           75 FPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELF  154 (716)
Q Consensus        75 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  154 (716)
                      +++++.|++++|.+.. +| .+..+++|++|+|++|.+++..|  ++.+++|++|++++|.+.+..+  +.++++|++|+
T Consensus        45 l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~  118 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT  118 (466)
T ss_dssp             HHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred             hccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence            4456666666666543 22 25556666666666666654332  5666666666666666654433  66666666666


Q ss_pred             cccccccCCCCccccCCcCCcEEEeecccccccccccccCCCCCceeeCCCCCcccCCCCccCEEEeeCCcCcccCCCcc
Q 041300          155 LYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSF  234 (716)
Q Consensus       155 L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  234 (716)
                      +++|.+++..+  |.++++|++|++++|.+++..  .+.                  .+++|++|+++ |.+.+. ++..
T Consensus       119 L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~------------------~l~~L~~L~l~-~~~~~~-~~~~  174 (466)
T 1o6v_A          119 LFNNQITDIDP--LKNLTNLNRLELSSNTISDIS--ALS------------------GLTSLQQLSFG-NQVTDL-KPLA  174 (466)
T ss_dssp             CCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCG--GGT------------------TCTTCSEEEEE-ESCCCC-GGGT
T ss_pred             CCCCCCCCChH--HcCCCCCCEEECCCCccCCCh--hhc------------------cCCcccEeecC-CcccCc-hhhc
Confidence            66666654432  566666666666666655311  122                  23344444443 222211 1111


Q ss_pred             ccccccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEE
Q 041300          235 GNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFI  314 (716)
Q Consensus       235 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  314 (716)
                      ....|++|++++|.+++                        .  ..+..+++|+.|++++|.+++..+  ++.+++|++|
T Consensus       175 ~l~~L~~L~l~~n~l~~------------------------~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L  226 (466)
T 1o6v_A          175 NLTTLERLDISSNKVSD------------------------I--SVLAKLTNLESLIATNNQISDITP--LGILTNLDEL  226 (466)
T ss_dssp             TCTTCCEEECCSSCCCC------------------------C--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEE
T ss_pred             cCCCCCEEECcCCcCCC------------------------C--hhhccCCCCCEEEecCCccccccc--ccccCCCCEE
Confidence            11133333333333322                        1  123444555555555555554433  3445555555


Q ss_pred             EccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCccc
Q 041300          315 DLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLT  394 (716)
Q Consensus       315 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  394 (716)
                      ++++|.+++.  ..+..+++|+.|++++|.+++..+  +..+++|+.|++++|.+++..+  +..+++|+.|++++|+++
T Consensus       227 ~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~  300 (466)
T 1o6v_A          227 SLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE  300 (466)
T ss_dssp             ECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCS
T ss_pred             ECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCccc
Confidence            5555555442  234555566666666666654433  5556666666666666654332  556666666666666665


Q ss_pred             ccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhcc
Q 041300          395 GRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQIC  474 (716)
Q Consensus       395 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~  474 (716)
                      +..+  +..+++|+.|++++|.+++..|  +..+++|+.|++++|++++.  ..+..+++|+.|++++|++++..|  +.
T Consensus       301 ~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~  372 (466)
T 1o6v_A          301 DISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LA  372 (466)
T ss_dssp             CCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GT
T ss_pred             Cchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hh
Confidence            4332  5566666666666666665444  55666666666666666643  356666666777777776666555  56


Q ss_pred             CCCCCCEEECcCCcCcc
Q 041300          475 SLKSLEKLNLSHNNLSG  491 (716)
Q Consensus       475 ~l~~L~~L~ls~N~l~~  491 (716)
                      .+++|+.|++++|++++
T Consensus       373 ~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          373 NLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             TCTTCCEEECCCEEEEC
T ss_pred             cCCCCCEEeccCCcccC
Confidence            66677777777776665

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=9.1e-37  Score=334.27  Aligned_cols=349  Identities=25%  Similarity=0.366  Sum_probs=291.4

Q ss_pred             cCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcccccCccCCCccccCCCCCceeecccccccCCCCccccCCcCCcE
Q 041300           97 GNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVR  176 (716)
Q Consensus        97 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  176 (716)
                      ..+++|+.|++++|.+.. +| .+..+++|++|+|++|.+.+..+  +..+++|++|++++|.+++..+  |.++++|++
T Consensus        43 ~~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~  116 (466)
T 1o6v_A           43 TDLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG  116 (466)
T ss_dssp             HHHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             hHhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence            346789999999999984 55 37889999999999999986544  8999999999999999987655  889999999


Q ss_pred             EEeecccccccccccccCCCCCceeeCCCCCcccCCCCccCEEEeeCCcCcccCCCccccccccEEEccCCcCccccCcc
Q 041300          177 LYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHN  256 (716)
Q Consensus       177 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  256 (716)
                      |++++|.+++..+                    +.++++|++|++++|.+.+. +                        .
T Consensus       117 L~L~~n~l~~~~~--------------------~~~l~~L~~L~l~~n~l~~~-~------------------------~  151 (466)
T 1o6v_A          117 LTLFNNQITDIDP--------------------LKNLTNLNRLELSSNTISDI-S------------------------A  151 (466)
T ss_dssp             EECCSSCCCCCGG--------------------GTTCTTCSEEEEEEEEECCC-G------------------------G
T ss_pred             EECCCCCCCCChH--------------------HcCCCCCCEEECCCCccCCC-h------------------------h
Confidence            9999998775321                    33455777888877776632 1                        2


Q ss_pred             ccCCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCC
Q 041300          257 ICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLG  336 (716)
Q Consensus       257 ~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  336 (716)
                      +..++.|+.|+++ |.+.+..  .+.++++|+.|++++|.++..  ..+..+++|++|++++|.+.+..+  +..+++|+
T Consensus       152 ~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~  224 (466)
T 1o6v_A          152 LSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLD  224 (466)
T ss_dssp             GTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCC
T ss_pred             hccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCC
Confidence            3445566666664 3444332  378899999999999999875  347889999999999999988765  77899999


Q ss_pred             EEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCc
Q 041300          337 TLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANK  416 (716)
Q Consensus       337 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~  416 (716)
                      .|++++|++++.  ..+..+++|+.|++++|.+++..+  +..+++|+.|++++|++++..+  +..+++|+.|++++|.
T Consensus       225 ~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~  298 (466)
T 1o6v_A          225 ELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQ  298 (466)
T ss_dssp             EEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSC
T ss_pred             EEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCc
Confidence            999999999864  468899999999999999986554  8899999999999999996544  8899999999999999


Q ss_pred             CCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcC
Q 041300          417 FNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNC  496 (716)
Q Consensus       417 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~  496 (716)
                      +.+..+  +..+++|+.|++++|++++..|  +..+++|++|++++|.+++.  ..+..+++|+.|++++|++++..|  
T Consensus       299 l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--  370 (466)
T 1o6v_A          299 LEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--  370 (466)
T ss_dssp             CSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--
T ss_pred             ccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--
Confidence            997654  8899999999999999997655  78899999999999999975  468899999999999999999887  


Q ss_pred             CcCCCCCCEEEccCCcccccC
Q 041300          497 FEGMHGLSIIDISDNQLQGPV  517 (716)
Q Consensus       497 ~~~~~~L~~l~ls~N~l~~~~  517 (716)
                      +..+++|+.|++++|++++.+
T Consensus       371 ~~~l~~L~~L~l~~n~~~~~p  391 (466)
T 1o6v_A          371 LANLTRITQLGLNDQAWTNAP  391 (466)
T ss_dssp             GTTCTTCCEEECCCEEEECCC
T ss_pred             hhcCCCCCEEeccCCcccCCc
Confidence            889999999999999999853

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=5e-37  Score=333.56  Aligned_cols=358  Identities=22%  Similarity=0.183  Sum_probs=261.6

Q ss_pred             CCCCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcccccCccCCCccccCCCC
Q 041300           70 FSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSS  149 (716)
Q Consensus        70 ~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  149 (716)
                      .++..+++|++||+++|.+.+. | .|..+++|++|+|++|.+++. |  ++.+++|++|++++|.+++. +  +.++++
T Consensus        36 ~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~  107 (457)
T 3bz5_A           36 ISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTK  107 (457)
T ss_dssp             EEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTT
T ss_pred             cChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCc
Confidence            3567789999999999999875 4 689999999999999999864 4  88999999999999999875 3  889999


Q ss_pred             CceeecccccccCCCCccccCCcCCcEEEeecccccccccccccCCCCCceeeCCCCCcccCCCCccCEEEeeCCcCccc
Q 041300          150 IEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGS  229 (716)
Q Consensus       150 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~L~~L~l~~n~l~~~  229 (716)
                      |++|++++|.+++. |  ++.+++|++|++++|.+++.   .                  +..+++|++|++++|...+.
T Consensus       108 L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~------------------l~~l~~L~~L~l~~n~~~~~  163 (457)
T 3bz5_A          108 LTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---D------------------VSHNTQLTELDCHLNKKITK  163 (457)
T ss_dssp             CCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---C------------------CTTCTTCCEEECTTCSCCCC
T ss_pred             CCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---c------------------cccCCcCCEEECCCCCcccc
Confidence            99999999999874 3  88899999999999988752   1                  23445788888888855444


Q ss_pred             CCCccccccccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCC
Q 041300          230 IPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYP  309 (716)
Q Consensus       230 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~  309 (716)
                      ++ ......|++|++++|.+++. |  +..++.|+.|++++|++++.   .+..+++|+.|++++|++++. |  +..++
T Consensus       164 ~~-~~~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~  233 (457)
T 3bz5_A          164 LD-VTPQTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D--VTPLT  233 (457)
T ss_dssp             CC-CTTCTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCT
T ss_pred             cc-cccCCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C--ccccC
Confidence            42 22234677888888777763 2  55666777777777777654   366667777777777777663 3  55666


Q ss_pred             CCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEcc
Q 041300          310 NLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILR  389 (716)
Q Consensus       310 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  389 (716)
                      +|+.|++++|++++..   +..+++|+.|+++.|              +|+.|++++|.+.+.+|  +..+++|+.|+++
T Consensus       234 ~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls  294 (457)
T 3bz5_A          234 QLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVT  294 (457)
T ss_dssp             TCSEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCT
T ss_pred             CCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECC
Confidence            7777777777776543   334566666666544              35566777777666555  4567778888888


Q ss_pred             CCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCcccc
Q 041300          390 GNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEI  469 (716)
Q Consensus       390 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~  469 (716)
                      +|...+.+|.   ...+|+.|++++|             ++|++|++++|++++. +  +..+++|+.|++++|++++  
T Consensus       295 ~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--  353 (457)
T 3bz5_A          295 HNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--  353 (457)
T ss_dssp             TCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--
T ss_pred             CCcccceecc---CCCcceEechhhc-------------ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--
Confidence            8876666653   3345555555544             6788899999988873 3  7788889999999998875  


Q ss_pred             chhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCcccccCCCc
Q 041300          470 PFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNS  520 (716)
Q Consensus       470 p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~~p~~  520 (716)
                            ++.|+.|++++|+++|.     ..+..|..+++++|+++|.+|..
T Consensus       354 ------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~  393 (457)
T 3bz5_A          354 ------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD  393 (457)
T ss_dssp             ------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred             ------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence                  35667778888888876     23456778899999999988753

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=5.1e-37  Score=333.48  Aligned_cols=354  Identities=20%  Similarity=0.192  Sum_probs=294.8

Q ss_pred             CCEEEEEcCCCCCccccCCCCCCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEE
Q 041300           51 GRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLS  130 (716)
Q Consensus        51 ~~v~~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  130 (716)
                      .+++.|+++++++.+ +  ..|..+++|++|+|++|.+.+. |  ++.+++|++|++++|.+++. |  ++.+++|++|+
T Consensus        42 ~~L~~L~Ls~n~l~~-~--~~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~  112 (457)
T 3bz5_A           42 ATLTSLDCHNSSITD-M--TGIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLN  112 (457)
T ss_dssp             TTCCEEECCSSCCCC-C--TTGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEE
T ss_pred             CCCCEEEccCCCccc-C--hhhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEE
Confidence            478999999999986 3  2689999999999999999875 3  89999999999999999975 3  89999999999


Q ss_pred             cccccCccCCCccccCCCCCceeecccccccCCCCccccCCcCCcEEEeecccccccccccccCCCCCceeeCCCCCccc
Q 041300          131 FQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSV  210 (716)
Q Consensus       131 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~  210 (716)
                      +++|.+++. |  +..+++|++|++++|.+++.   .++++++|+.|++++|...+.+                    .+
T Consensus       113 L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--------------------~~  166 (457)
T 3bz5_A          113 CDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--------------------DV  166 (457)
T ss_dssp             CCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--------------------CC
T ss_pred             CCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--------------------cc
Confidence            999999974 4  89999999999999999975   3889999999999999644322                    23


Q ss_pred             CCCCccCEEEeeCCcCcccCCCccccccccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEE
Q 041300          211 GNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRV  290 (716)
Q Consensus       211 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L  290 (716)
                      ..+++|++|++++|.+++. | ......|+.|++++|.+++.   .+..++.|+.|++++|++++ +|  +..+++|+.|
T Consensus       167 ~~l~~L~~L~ls~n~l~~l-~-l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L  238 (457)
T 3bz5_A          167 TPQTQLTTLDCSFNKITEL-D-VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYF  238 (457)
T ss_dssp             TTCTTCCEEECCSSCCCCC-C-CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEE
T ss_pred             ccCCcCCEEECCCCcccee-c-cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEE
Confidence            4566899999999999874 4 33345899999999999986   37788999999999999998 45  8899999999


Q ss_pred             EccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccc
Q 041300          291 RLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIV  370 (716)
Q Consensus       291 ~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  370 (716)
                      ++++|++++..   +..+++|+.|+++.|              +|+.|++++|.+.+.+|  ++.+++|+.|++++|...
T Consensus       239 ~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l  299 (457)
T 3bz5_A          239 DCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQL  299 (457)
T ss_dssp             ECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTC
T ss_pred             EeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCccc
Confidence            99999999875   456789999998876              45678889998887776  568899999999999987


Q ss_pred             cccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhh
Q 041300          371 GEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELE  450 (716)
Q Consensus       371 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  450 (716)
                      +.+|.   ..++|+.|++++|             ++|+.|++++|++++. +  +..+++|+.|++++|++++       
T Consensus       300 ~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~-------  353 (457)
T 3bz5_A          300 YLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD-------  353 (457)
T ss_dssp             CEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB-------
T ss_pred             ceecc---CCCcceEechhhc-------------ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC-------
Confidence            77764   3455666665554             6889999999999874 3  8889999999999999885       


Q ss_pred             CCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCCc
Q 041300          451 KLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFE  498 (716)
Q Consensus       451 ~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~  498 (716)
                       ++.|..|++++|.+.|.     ..+..|+.+++++|+++|.+|..+.
T Consensus       354 -l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~  395 (457)
T 3bz5_A          354 -FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLL  395 (457)
T ss_dssp             -CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCB
T ss_pred             -ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHh
Confidence             34567778999999875     2456788899999999999887554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.9e-36  Score=333.20  Aligned_cols=300  Identities=20%  Similarity=0.165  Sum_probs=201.7

Q ss_pred             CCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcccccCccCCCccccCCCCCceeec
Q 041300           76 PQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFL  155 (716)
Q Consensus        76 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  155 (716)
                      +.+++|||++|.+.+..+..|.++++|++|+|++|.+++..|..|+++++|++|+|++|.++...+..|.++++|++|+|
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  111 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI  111 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred             CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence            58999999999999998999999999999999999999888999999999999999999999777778899999999999


Q ss_pred             ccccccCCCCccccCCcCCcEEEeecccccccccccccCCCCCceeeCCCCCcccCCCCccCEEEeeCCcCcccCCCccc
Q 041300          156 YSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFG  235 (716)
Q Consensus       156 ~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  235 (716)
                      ++|.+++..|..|.++++|++|++++|.+++..+..+.                  .+++|++|++++|.+++..+..+.
T Consensus       112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~------------------~l~~L~~L~l~~n~l~~~~~~~l~  173 (477)
T 2id5_A          112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS------------------GLNSLEQLTLEKCNLTSIPTEALS  173 (477)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSST------------------TCTTCCEEEEESCCCSSCCHHHHT
T ss_pred             CCCccccCChhHccccccCCEEECCCCccceeChhhcc------------------CCCCCCEEECCCCcCcccChhHhc
Confidence            99999999899999999999999999998865554444                  444788888888887754444343


Q ss_pred             c-ccccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEE
Q 041300          236 N-SMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFI  314 (716)
Q Consensus       236 ~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  314 (716)
                      . ..|+.|++++|.+.+..+..+..++.|+.|++++|.+.+.+|.......+|+.|++++|+++...+..+..+++|++|
T Consensus       174 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  253 (477)
T 2id5_A          174 HLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFL  253 (477)
T ss_dssp             TCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEE
T ss_pred             ccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCee
Confidence            3 256666666666665555555555555555555555544444444444455555555555554444445555555555


Q ss_pred             EccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcc
Q 041300          315 DLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQL  393 (716)
Q Consensus       315 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  393 (716)
                      +|++|.+++..+..|..+++|+.|+|++|++++..|..|..+++|+.|++++|++++..+..|..+++|+.|++++|.+
T Consensus       254 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  332 (477)
T 2id5_A          254 NLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL  332 (477)
T ss_dssp             ECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred             ECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence            5555555544444444444455555444444444444444444444444444444433333344444444444444444

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=3.4e-35  Score=314.35  Aligned_cols=311  Identities=20%  Similarity=0.199  Sum_probs=194.7

Q ss_pred             CCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcccccCccCCCccccCCCCCcee
Q 041300           74 SFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEEL  153 (716)
Q Consensus        74 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  153 (716)
                      .+++++.|++++|.+..+.+..|..+++|++|+|++|.+++..+..|+.+++|++|+|++|.+.+..|..|.++++|++|
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            46789999999999887777778889999999999999988777889999999999999999988888888889999999


Q ss_pred             ecccccccCCCCccccCCcCCcEEEeecccccccccccccCCCCCceeeCCCCCcccCCCCccCEEEeeCCcCcccCCCc
Q 041300          154 FLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPS  233 (716)
Q Consensus       154 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  233 (716)
                      +|++|.++...+..|.++++|++|++++|.+++..+..+.                  .+++|++|++++|.+++..   
T Consensus       123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~------------------~l~~L~~L~l~~n~l~~~~---  181 (390)
T 3o6n_A          123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ------------------ATTSLQNLQLSSNRLTHVD---  181 (390)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTS------------------SCTTCCEEECCSSCCSBCC---
T ss_pred             ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhcc------------------CCCCCCEEECCCCcCCccc---
Confidence            9999988866666678888888888888877654433333                  3335556666555554210   


Q ss_pred             cccccccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCE
Q 041300          234 FGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTF  313 (716)
Q Consensus       234 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~  313 (716)
                                                                     +..+++|+.|++++|.+++.     ...++|++
T Consensus       182 -----------------------------------------------~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~  209 (390)
T 3o6n_A          182 -----------------------------------------------LSLIPSLFHANVSYNLLSTL-----AIPIAVEE  209 (390)
T ss_dssp             -----------------------------------------------GGGCTTCSEEECCSSCCSEE-----ECCSSCSE
T ss_pred             -----------------------------------------------cccccccceeeccccccccc-----CCCCcceE
Confidence                                                           12233444444444444321     12235555


Q ss_pred             EEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcc
Q 041300          314 IDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQL  393 (716)
Q Consensus       314 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  393 (716)
                      |++++|.+......   ..++|+.|++++|.+++.  ..+..+++|++|++++|.+++..|..+..+++|+.|++++|++
T Consensus       210 L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  284 (390)
T 3o6n_A          210 LDASHNSINVVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL  284 (390)
T ss_dssp             EECCSSCCCEEECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCC
T ss_pred             EECCCCeeeecccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcC
Confidence            66666555543221   124556666666665532  3455556666666666666555555555555555555555555


Q ss_pred             cccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhc
Q 041300          394 TGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQI  473 (716)
Q Consensus       394 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~  473 (716)
                      ++ +|..+..+++|++|+|++|.+.                         .+|..+..+++|++|++++|.++.. +  +
T Consensus       285 ~~-~~~~~~~l~~L~~L~L~~n~l~-------------------------~~~~~~~~l~~L~~L~L~~N~i~~~-~--~  335 (390)
T 3o6n_A          285 VA-LNLYGQPIPTLKVLDLSHNHLL-------------------------HVERNQPQFDRLENLYLDHNSIVTL-K--L  335 (390)
T ss_dssp             CE-EECSSSCCTTCCEEECCSSCCC-------------------------CCGGGHHHHTTCSEEECCSSCCCCC-C--C
T ss_pred             cc-cCcccCCCCCCCEEECCCCcce-------------------------ecCccccccCcCCEEECCCCcccee-C--c
Confidence            53 3333444455555555555554                         2333344444455555555554432 1  3


Q ss_pred             cCCCCCCEEECcCCcCcc
Q 041300          474 CSLKSLEKLNLSHNNLSG  491 (716)
Q Consensus       474 ~~l~~L~~L~ls~N~l~~  491 (716)
                      ..+++|+.|++++|+++.
T Consensus       336 ~~~~~L~~L~l~~N~~~~  353 (390)
T 3o6n_A          336 STHHTLKNLTLSHNDWDC  353 (390)
T ss_dssp             CTTCCCSEEECCSSCEEH
T ss_pred             hhhccCCEEEcCCCCccc
Confidence            445666666666666654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=4.4e-35  Score=330.68  Aligned_cols=289  Identities=20%  Similarity=0.187  Sum_probs=187.1

Q ss_pred             CCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcccccCccCCCccccCCCCCcee
Q 041300           74 SFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEEL  153 (716)
Q Consensus        74 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  153 (716)
                      .+++++.|++++|.+..+.+..|.++++|++|+|++|.+.+..|..|+.+++|++|+|++|.+++..|..|+++++|++|
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            46788999999999988777778889999999999999998888889999999999999999998888888899999999


Q ss_pred             ecccccccCCCCccccCCcCCcEEEeecccccccccccccCCCCCceeeCCCCCcccCCCCccCEEEeeCCcCcccCCCc
Q 041300          154 FLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPS  233 (716)
Q Consensus       154 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  233 (716)
                      +|++|.+++..+..|+++++|++|+|++|.+++..+..+..                  +++|++|++++|.+++..   
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------------------l~~L~~L~L~~N~l~~~~---  187 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA------------------TTSLQNLQLSSNRLTHVD---  187 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTT------------------CTTCCEEECTTSCCSBCC---
T ss_pred             EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhc------------------CCcCcEEECcCCCCCCcC---
Confidence            99999988777777788888888888888877554444433                  335556666555554321   


Q ss_pred             cccccccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCE
Q 041300          234 FGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTF  313 (716)
Q Consensus       234 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~  313 (716)
                                                                     +..+++|+.|++++|.+++.     ...++|+.
T Consensus       188 -----------------------------------------------~~~l~~L~~L~l~~n~l~~l-----~~~~~L~~  215 (597)
T 3oja_B          188 -----------------------------------------------LSLIPSLFHANVSYNLLSTL-----AIPIAVEE  215 (597)
T ss_dssp             -----------------------------------------------GGGCTTCSEEECCSSCCSEE-----ECCTTCSE
T ss_pred             -----------------------------------------------hhhhhhhhhhhcccCccccc-----cCCchhhe
Confidence                                                           11233444444444444321     12335556


Q ss_pred             EEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcc
Q 041300          314 IDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQL  393 (716)
Q Consensus       314 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  393 (716)
                      |++++|.+....+..   .++|+.|+|++|.+++  +..+..+++|+.|++++|.+++..|..|..+++|+.|+|++|++
T Consensus       216 L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  290 (597)
T 3oja_B          216 LDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL  290 (597)
T ss_dssp             EECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCC
T ss_pred             eeccCCccccccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCC
Confidence            666666555433221   1456666666666654  24455566666666666666655555566666666666666665


Q ss_pred             cccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCc
Q 041300          394 TGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFV  442 (716)
Q Consensus       394 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  442 (716)
                      ++ +|..+..+++|+.|+|++|.+. .+|..+..+++|+.|+|++|.++
T Consensus       291 ~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~  337 (597)
T 3oja_B          291 VA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV  337 (597)
T ss_dssp             CE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC
T ss_pred             CC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCC
Confidence            53 3444444555555555555554 33444444445555555554443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=8.6e-35  Score=311.21  Aligned_cols=335  Identities=22%  Similarity=0.227  Sum_probs=235.5

Q ss_pred             CCCCCCEEECcCCcCcccCCccccCCCCCCEEEcccccCccCCCccccCCCCCceeecccccccCCCCccccCCcCCcEE
Q 041300           98 NLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRL  177 (716)
Q Consensus        98 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  177 (716)
                      .+.+|++|++++|.+....+..|..+++|++|+|++|.+.+..+..|..+++|++|+|++|.+++..|..|+++++|++|
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            36789999999999986666668889999999999999988777888888889999998888888777778777777777


Q ss_pred             EeecccccccccccccCCCCCceeeCCCCCcccCCCCccCEEEeeCCcCcccCCCccccccccEEEccCCcCccccCccc
Q 041300          178 YINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNI  257 (716)
Q Consensus       178 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~  257 (716)
                      ++++|.++...+..+                  .++++|++|++++|.+                               
T Consensus       123 ~L~~n~l~~l~~~~~------------------~~l~~L~~L~L~~n~l-------------------------------  153 (390)
T 3o6n_A          123 VLERNDLSSLPRGIF------------------HNTPKLTTLSMSNNNL-------------------------------  153 (390)
T ss_dssp             ECCSSCCCCCCTTTT------------------TTCTTCCEEECCSSCC-------------------------------
T ss_pred             ECCCCccCcCCHHHh------------------cCCCCCcEEECCCCcc-------------------------------
Confidence            777776652111111                  1222333333333322                               


Q ss_pred             cCCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCE
Q 041300          258 CRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGT  337 (716)
Q Consensus       258 ~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  337 (716)
                                      .+..|..+.++++|+.|++++|++++..                           +..+++|+.
T Consensus       154 ----------------~~~~~~~~~~l~~L~~L~l~~n~l~~~~---------------------------~~~l~~L~~  190 (390)
T 3o6n_A          154 ----------------ERIEDDTFQATTSLQNLQLSSNRLTHVD---------------------------LSLIPSLFH  190 (390)
T ss_dssp             ----------------CBCCTTTTSSCTTCCEEECCSSCCSBCC---------------------------GGGCTTCSE
T ss_pred             ----------------CccChhhccCCCCCCEEECCCCcCCccc---------------------------cccccccce
Confidence                            2233334445556666666666555431                           233344555


Q ss_pred             EEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcC
Q 041300          338 LNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKF  417 (716)
Q Consensus       338 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  417 (716)
                      |++++|.+++.     ...++|+.|++++|.+... |..  ..++|+.|++++|++++.  ..+..+++|++|++++|.+
T Consensus       191 L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l  260 (390)
T 3o6n_A          191 ANVSYNLLSTL-----AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNEL  260 (390)
T ss_dssp             EECCSSCCSEE-----ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC
T ss_pred             eeccccccccc-----CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcC
Confidence            55555544421     2234566677777766643 222  236788888888888753  5677888889999999988


Q ss_pred             CccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCC
Q 041300          418 NNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCF  497 (716)
Q Consensus       418 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~  497 (716)
                      .+..|..|..+++|+.|++++|++++ +|..+..+++|++|++++|++. .+|..+..+++|+.|++++|+++...   +
T Consensus       261 ~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~---~  335 (390)
T 3o6n_A          261 EKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---L  335 (390)
T ss_dssp             CEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---C
T ss_pred             CCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC---c
Confidence            88888888889999999999999885 5666678899999999999998 56777888999999999999998763   6


Q ss_pred             cCCCCCCEEEccCCcccccCCCccccCCCCcccccCCCCCCCC
Q 041300          498 EGMHGLSIIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGG  540 (716)
Q Consensus       498 ~~~~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~~c~~  540 (716)
                      ..+++|+.|++++|++.+... ...+.......+.+++..|..
T Consensus       336 ~~~~~L~~L~l~~N~~~~~~~-~~~~~~~~~~~~~~~~~~c~~  377 (390)
T 3o6n_A          336 STHHTLKNLTLSHNDWDCNSL-RALFRNVARPAVDDADQHCKI  377 (390)
T ss_dssp             CTTCCCSEEECCSSCEEHHHH-HHHTTTCCTTTBCCCCSCCCT
T ss_pred             hhhccCCEEEcCCCCccchhH-HHHHHHHHhhcccccCceecc
Confidence            778999999999999987432 223444444455666667754

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=1.3e-34  Score=326.96  Aligned_cols=335  Identities=22%  Similarity=0.228  Sum_probs=222.7

Q ss_pred             CCCCCEEECcCCcCcccCCccccCCCCCCEEEcccccCccCCCccccCCCCCceeecccccccCCCCccccCCcCCcEEE
Q 041300           99 LTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLY  178 (716)
Q Consensus        99 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  178 (716)
                      +.+++.|++++|.+...++..|+.+++|++|+|++|.+.+..|..|..+++|++|+|++|.+++..|..|+++++|++|+
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            67889999999999877777788899999999999999988888888999999999999988888887788888777777


Q ss_pred             eecccccccccccccCCCCCceeeCCCCCcccCCCCccCEEEeeCCcCcccCCCccccccccEEEccCCcCccccCcccc
Q 041300          179 INNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNIC  258 (716)
Q Consensus       179 L~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~  258 (716)
                      |++|.+++..+..|                  .++++|++|++++|.                                 
T Consensus       130 L~~n~l~~l~~~~~------------------~~l~~L~~L~Ls~N~---------------------------------  158 (597)
T 3oja_B          130 LERNDLSSLPRGIF------------------HNTPKLTTLSMSNNN---------------------------------  158 (597)
T ss_dssp             CCSSCCCCCCTTTT------------------TTCTTCCEEECCSSC---------------------------------
T ss_pred             eeCCCCCCCCHHHh------------------ccCCCCCEEEeeCCc---------------------------------
Confidence            77776653222111                  122233333333332                                 


Q ss_pred             CCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEE
Q 041300          259 RGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTL  338 (716)
Q Consensus       259 ~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  338 (716)
                                    +.+..|..|.++++|+.|++++|.+++..   +..+++|+.|++++|.+.+.              
T Consensus       159 --------------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l--------------  207 (597)
T 3oja_B          159 --------------LERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTL--------------  207 (597)
T ss_dssp             --------------CCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEE--------------
T ss_pred             --------------CCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccc--------------
Confidence                          22333444555666666666666666542   23345555555555554432              


Q ss_pred             EcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCC
Q 041300          339 NVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFN  418 (716)
Q Consensus       339 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  418 (716)
                                     ....+|+.|++++|.+....+..   .++|+.|+|++|.+++  +..+..+++|+.|+|++|.+.
T Consensus       208 ---------------~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~  267 (597)
T 3oja_B          208 ---------------AIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELE  267 (597)
T ss_dssp             ---------------ECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCC
T ss_pred             ---------------cCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccC
Confidence                           22234555555555554322211   2456666666666664  245666777777777777777


Q ss_pred             ccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCCc
Q 041300          419 NSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFE  498 (716)
Q Consensus       419 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~  498 (716)
                      +..|..|..+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|++++..   +.
T Consensus       268 ~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~  342 (597)
T 3oja_B          268 KIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LS  342 (597)
T ss_dssp             EEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CC
T ss_pred             CCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hh
Confidence            6667777777777777777777764 4555566777888888888877 46666777788888888888887653   56


Q ss_pred             CCCCCCEEEccCCcccccCCCccccCCCCcccccCCCCCCCCC
Q 041300          499 GMHGLSIIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGV  541 (716)
Q Consensus       499 ~~~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~~c~~~  541 (716)
                      .+++|+.|++++|++.|... ...+.......+.++...|+..
T Consensus       343 ~~~~L~~L~l~~N~~~~~~~-~~~~~~~~~~~~~~~~~~C~~~  384 (597)
T 3oja_B          343 THHTLKNLTLSHNDWDCNSL-RALFRNVARPAVDDADQHCKID  384 (597)
T ss_dssp             TTCCCSEEECCSSCEEHHHH-HHHTTTCCTTTBCCCCCCCCTT
T ss_pred             hcCCCCEEEeeCCCCCChhH-HHHHHHHhhhccccccccCCcc
Confidence            67788899999999887532 2334445555567777788653

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=1.8e-33  Score=296.17  Aligned_cols=103  Identities=23%  Similarity=0.383  Sum_probs=59.3

Q ss_pred             CCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcccccCccCCCccccCCCCCc
Q 041300           72 FSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIE  151 (716)
Q Consensus        72 f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  151 (716)
                      +..+++|++|++++|.+... + .+..+++|++|++++|.+++..+  +..+++|++|++++|.++..  +.+..+++|+
T Consensus        40 ~~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~  113 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLR  113 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCS
T ss_pred             chhcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCC
Confidence            34566677777777776543 2 36667777777777777664322  66666666666666666532  2455556666


Q ss_pred             eeecccccccCCCCccccCCcCCcEEEeecc
Q 041300          152 ELFLYSNHLNGSLPPFLGNLSNIVRLYINNN  182 (716)
Q Consensus       152 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n  182 (716)
                      +|++++|.+++..+  +..+++|++|++++|
T Consensus       114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n  142 (347)
T 4fmz_A          114 ELYLNEDNISDISP--LANLTKMYSLNLGAN  142 (347)
T ss_dssp             EEECTTSCCCCCGG--GTTCTTCCEEECTTC
T ss_pred             EEECcCCcccCchh--hccCCceeEEECCCC
Confidence            66666655553322  444444444444444

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=2.8e-33  Score=294.65  Aligned_cols=307  Identities=24%  Similarity=0.370  Sum_probs=163.0

Q ss_pred             ccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcccccCccCCCccccCCCCCceeecccccccCCCCccccCCcCCc
Q 041300           96 IGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIV  175 (716)
Q Consensus        96 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~  175 (716)
                      +..+++|++|++++|.+.. +| .+..+++|++|++++|.++...+  +..+++|++|++++|.++..  +.|.++++|+
T Consensus        40 ~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~  113 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLR  113 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCS
T ss_pred             chhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCC
Confidence            4567777788887777763 33 36677777777777777764332  66677777777777766542  2455555666


Q ss_pred             EEEeecccccccccccccCCCCCceeeCCCCCcccCCCCccCEEEeeCCcCcccCCCccccccccEEEccCCcCccccCc
Q 041300          176 RLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPH  255 (716)
Q Consensus       176 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  255 (716)
                      +|++++|.+++..+                    +..+++|++|++++|..                             
T Consensus       114 ~L~l~~n~i~~~~~--------------------~~~l~~L~~L~l~~n~~-----------------------------  144 (347)
T 4fmz_A          114 ELYLNEDNISDISP--------------------LANLTKMYSLNLGANHN-----------------------------  144 (347)
T ss_dssp             EEECTTSCCCCCGG--------------------GTTCTTCCEEECTTCTT-----------------------------
T ss_pred             EEECcCCcccCchh--------------------hccCCceeEEECCCCCC-----------------------------
Confidence            66555555442111                    11222333333333321                             


Q ss_pred             cccCCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCC
Q 041300          256 NICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKL  335 (716)
Q Consensus       256 ~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  335 (716)
                                        ...+ ..+..+++|+.|++++|.+.+..+  +..+++|++|++++|.+.+..+  +..+++|
T Consensus       145 ------------------~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L  201 (347)
T 4fmz_A          145 ------------------LSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSL  201 (347)
T ss_dssp             ------------------CCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTC
T ss_pred             ------------------cccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCcc
Confidence                              1111 124556666666666666664433  4555566666666655554322  4445555


Q ss_pred             CEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCC
Q 041300          336 GTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSAN  415 (716)
Q Consensus       336 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N  415 (716)
                      +.|++++|.+++..+  +..+++|++|++++|.+                        ++..+  +..+++|++|++++|
T Consensus       202 ~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l------------------------~~~~~--~~~l~~L~~L~l~~n  253 (347)
T 4fmz_A          202 HYFTAYVNQITDITP--VANMTRLNSLKIGNNKI------------------------TDLSP--LANLSQLTWLEIGTN  253 (347)
T ss_dssp             CEEECCSSCCCCCGG--GGGCTTCCEEECCSSCC------------------------CCCGG--GTTCTTCCEEECCSS
T ss_pred             ceeecccCCCCCCch--hhcCCcCCEEEccCCcc------------------------CCCcc--hhcCCCCCEEECCCC
Confidence            555555555543322  44444555555555544                        43221  444555555555555


Q ss_pred             cCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCc
Q 041300          416 KFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPN  495 (716)
Q Consensus       416 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~  495 (716)
                      .+++.  ..+..+++|++|++++|++++.  ..+..+++|++|++++|.+++..|..+..+++|+.|++++|++++..| 
T Consensus       254 ~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-  328 (347)
T 4fmz_A          254 QISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-  328 (347)
T ss_dssp             CCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-
T ss_pred             ccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-
Confidence            55432  2344555555555555555432  235555556666666666555555555566666666666666655544 


Q ss_pred             CCcCCCCCCEEEccCCccc
Q 041300          496 CFEGMHGLSIIDISDNQLQ  514 (716)
Q Consensus       496 ~~~~~~~L~~l~ls~N~l~  514 (716)
                       +..+++|+.||+++|+++
T Consensus       329 -~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          329 -LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             -GGGCTTCSEESSSCC---
T ss_pred             -hhhhhccceeehhhhccc
Confidence             555666666666666553

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=6.3e-34  Score=294.18  Aligned_cols=256  Identities=25%  Similarity=0.429  Sum_probs=202.7

Q ss_pred             CCCcEEEccCCcCCC--ccchhhCCCCCCCEEEccC-CccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCE
Q 041300          285 TSLIRVRLNGNNLTG--NISEALGLYPNLTFIDLSR-NNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQA  361 (716)
Q Consensus       285 ~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  361 (716)
                      .+++.|++++|.+++  .+|..+..+++|++|++++ |.+.+.+|..+..+++|++|++++|++++.+|..+..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            356677777777776  6666777777777777773 7777777777777777777777777777777777777888888


Q ss_pred             EEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCC-CCCEEEccCCcCCccCchhhcCcCCCCEEECcCCc
Q 041300          362 LDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLI-ELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQ  440 (716)
Q Consensus       362 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~  440 (716)
                      |++++|.+++.+|..+..+++|++|++++|++++.+|..+..++ +|++|++++|.+++..|..+..+. |+.|++++|+
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~  208 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence            88888888777777777888888888888888777777777777 788888888888777787777776 8888888888


Q ss_pred             CcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCcccccCCCc
Q 041300          441 FVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNS  520 (716)
Q Consensus       441 l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~~p~~  520 (716)
                      +++..|..+..+++|+.|++++|.+++.+|. +..+++|++|++++|++++.+|..|..+++|+.|++++|+++|.+|..
T Consensus       209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~  287 (313)
T 1ogq_A          209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG  287 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred             ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence            8877788888888888888888888766665 777888888888888888888888888888888888888888888887


Q ss_pred             cccCCCCcccccCCCCCCCCCC
Q 041300          521 TAFRNAPVEALEGNKELCGGVK  542 (716)
Q Consensus       521 ~~~~~~~~~~~~~n~~~c~~~~  542 (716)
                      ..+.......+.+|+.+|+.+.
T Consensus       288 ~~l~~L~~l~l~~N~~lc~~p~  309 (313)
T 1ogq_A          288 GNLQRFDVSAYANNKCLCGSPL  309 (313)
T ss_dssp             TTGGGSCGGGTCSSSEEESTTS
T ss_pred             ccccccChHHhcCCCCccCCCC
Confidence            7777777778888888887643

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=100.00  E-value=5.1e-32  Score=282.89  Aligned_cols=289  Identities=18%  Similarity=0.216  Sum_probs=232.9

Q ss_pred             CccCEEEeeCCcCcccCCCccccccccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEcc
Q 041300          214 TNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLN  293 (716)
Q Consensus       214 ~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~  293 (716)
                      .+++.++++++.++ .+|..+. ..++.|++++|.+++..+..+..++.|+.|++++|.+++..|..|.++++|++|+++
T Consensus        33 c~l~~l~~~~~~l~-~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           33 CHLRVVQCSDLGLK-AVPKEIS-PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             EETTEEECCSSCCS-SCCSCCC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             ccCCEEECCCCCcc-ccCCCCC-CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            36888999998887 4555443 478899999999988888888888899999999999888888888888999999999


Q ss_pred             CCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcc--cCcccccCCCCCCEEEccCCcccc
Q 041300          294 GNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITG--GIPREIGNMSQLQALDLSLNHIVG  371 (716)
Q Consensus       294 ~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~  371 (716)
                      +|.++...+..+   ++|++|++++|.+++..+..|..+++|+.|++++|.++.  ..+..+..+ +|++|++++|++++
T Consensus       111 ~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~  186 (332)
T 2ft3_A          111 KNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG  186 (332)
T ss_dssp             SSCCCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred             CCcCCccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence            998885544332   788999999998887777778888899999999988853  667777777 88889999998884


Q ss_pred             ccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhC
Q 041300          372 EIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEK  451 (716)
Q Consensus       372 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  451 (716)
                       +|..+.  ++|+.|++++|++++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|+++ .+|..+..
T Consensus       187 -l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~  262 (332)
T 2ft3_A          187 -IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD  262 (332)
T ss_dssp             -CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred             -cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence             555443  68888899999888777778888888999999999888877778888888999999998888 67777888


Q ss_pred             CCCCCEEECCCCcCccccchhccCC------CCCCEEECcCCcCc--ccCCcCCcCCCCCCEEEccCCc
Q 041300          452 LVQLSELDASHNLFGGEIPFQICSL------KSLEKLNLSHNNLS--GLIPNCFEGMHGLSIIDISDNQ  512 (716)
Q Consensus       452 l~~L~~L~ls~N~l~~~~p~~~~~l------~~L~~L~ls~N~l~--~~~~~~~~~~~~L~~l~ls~N~  512 (716)
                      +++|++|++++|.+++..+..|+..      +.|+.|++++|.+.  ...|..|..+++|+.+++++|+
T Consensus       263 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             CccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            8889999999998887776666553      56888888888887  5667788888888888888875

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=100.00  E-value=1.5e-31  Score=279.12  Aligned_cols=289  Identities=20%  Similarity=0.219  Sum_probs=183.7

Q ss_pred             ccCEEEeeCCcCcccCCCccccccccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEccC
Q 041300          215 NLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNG  294 (716)
Q Consensus       215 ~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~  294 (716)
                      +++.++++++.++. +|..+. ..++.|++++|.+++..+..+..++.|+.|++++|.+++..|..|.++++|++|++++
T Consensus        32 ~l~~l~~~~~~l~~-lp~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  109 (330)
T 1xku_A           32 HLRVVQCSDLGLEK-VPKDLP-PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK  109 (330)
T ss_dssp             ETTEEECTTSCCCS-CCCSCC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCeEEEecCCCccc-cCccCC-CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence            57777777777763 444332 3577777777777766666666677777777777777766666677777777777777


Q ss_pred             CcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcc--cCcccccCCCCCCEEEccCCccccc
Q 041300          295 NNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITG--GIPREIGNMSQLQALDLSLNHIVGE  372 (716)
Q Consensus       295 n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~  372 (716)
                      |+++......   .++|++|++++|.+++..+..|..+++|+.|++++|.++.  ..+..+..+++|++|++++|.++. 
T Consensus       110 n~l~~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-  185 (330)
T 1xku_A          110 NQLKELPEKM---PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-  185 (330)
T ss_dssp             SCCSBCCSSC---CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-
T ss_pred             CcCCccChhh---cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-
Confidence            7766433222   2566777777777666655556666677777777766643  455566666677777777776663 


Q ss_pred             cCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCC
Q 041300          373 IPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKL  452 (716)
Q Consensus       373 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  452 (716)
                      +|..+.  ++|+.|++++|++++..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+++ .+|..+..+
T Consensus       186 l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l  262 (330)
T 1xku_A          186 IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADH  262 (330)
T ss_dssp             CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTC
T ss_pred             CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccC
Confidence            444332  56667777777666666666666666777777777666655556666666777777777666 556666666


Q ss_pred             CCCCEEECCCCcCccccchhccCC------CCCCEEECcCCcCcc--cCCcCCcCCCCCCEEEccCCc
Q 041300          453 VQLSELDASHNLFGGEIPFQICSL------KSLEKLNLSHNNLSG--LIPNCFEGMHGLSIIDISDNQ  512 (716)
Q Consensus       453 ~~L~~L~ls~N~l~~~~p~~~~~l------~~L~~L~ls~N~l~~--~~~~~~~~~~~L~~l~ls~N~  512 (716)
                      ++|++|++++|.+++..+..|+..      +.|+.|++++|.+..  ..|..|..+.+++.+++++|+
T Consensus       263 ~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          263 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             SSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             CCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            666777777776665555555432      556666666666643  445566666666666666663

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=100.00  E-value=1.2e-31  Score=280.14  Aligned_cols=288  Identities=20%  Similarity=0.228  Sum_probs=140.4

Q ss_pred             CCCEEECcCCcCcccCCccccCCCCCCEEEcccccCccCCCccccCCCCCceeecccccccCCCCccccCCcCCcEEEee
Q 041300          101 KLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYIN  180 (716)
Q Consensus       101 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~  180 (716)
                      +|+.+++++|.++ .+|..+.  ++|++|++++|.+.+..|..|.++++|++|+|++|.+++..|..|+++++|++|+++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            3555555555554 3343332  455555555555555555555555555555555555555555555555555555555


Q ss_pred             cccccccccccccCCCCCceeeCCCCCcccCCCCccCEEEeeCCcCcccCCCccccccccEEEccCCcCccccCccccCC
Q 041300          181 NNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRG  260 (716)
Q Consensus       181 ~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~  260 (716)
                      +|.++. ++..+                  .  ++|++|++++|.+.+                       ..+..+..+
T Consensus       111 ~n~l~~-l~~~~------------------~--~~L~~L~l~~n~i~~-----------------------~~~~~~~~l  146 (332)
T 2ft3_A          111 KNHLVE-IPPNL------------------P--SSLVELRIHDNRIRK-----------------------VPKGVFSGL  146 (332)
T ss_dssp             SSCCCS-CCSSC------------------C--TTCCEEECCSSCCCC-----------------------CCSGGGSSC
T ss_pred             CCcCCc-cCccc------------------c--ccCCEEECCCCccCc-----------------------cCHhHhCCC
Confidence            555441 11110                  0  234444444444432                       222223333


Q ss_pred             CCccEEEecCCccc--ccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEE
Q 041300          261 GLLEAFIVSENHFQ--GTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTL  338 (716)
Q Consensus       261 ~~L~~L~l~~n~l~--~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  338 (716)
                      +.|+.|++++|.++  +..+..+..+ +|+.|++++|++++...                         .+.  ++|+.|
T Consensus       147 ~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~-------------------------~~~--~~L~~L  198 (332)
T 2ft3_A          147 RNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPK-------------------------DLP--ETLNEL  198 (332)
T ss_dssp             SSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCS-------------------------SSC--SSCSCC
T ss_pred             ccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCc-------------------------ccc--CCCCEE
Confidence            33333333333332  1333334333 44444444444443221                         111  344455


Q ss_pred             EcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCC
Q 041300          339 NVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFN  418 (716)
Q Consensus       339 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  418 (716)
                      ++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|.++
T Consensus       199 ~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~  277 (332)
T 2ft3_A          199 HLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT  277 (332)
T ss_dssp             BCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCC
T ss_pred             ECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCC
Confidence            55555555444444555555555555555555444444555555555555555555 44444555555555555555555


Q ss_pred             ccCchhhcC------cCCCCEEECcCCcCc--ccCChhhhCCCCCCEEECCCCc
Q 041300          419 NSVPESLGN------LLKLHYLGLSNNQFV--LELPKELEKLVQLSELDASHNL  464 (716)
Q Consensus       419 ~~~~~~~~~------l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~ls~N~  464 (716)
                      +..+..|..      ...|+.|++++|++.  ...|..|..+++|+.+++++|+
T Consensus       278 ~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          278 KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             BCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             ccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            444444433      245666666666665  4555666667777777776664

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=100.00  E-value=2.7e-31  Score=277.25  Aligned_cols=131  Identities=18%  Similarity=0.195  Sum_probs=71.9

Q ss_pred             CCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEc
Q 041300          333 PKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDF  412 (716)
Q Consensus       333 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  412 (716)
                      ++|++|++++|++++..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+++ .+|..+..+++|++|++
T Consensus       192 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l  270 (330)
T 1xku_A          192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYL  270 (330)
T ss_dssp             TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEEC
T ss_pred             ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEEC
Confidence            44555555555555444555555555555555555555444445555555555555555555 44555555555666666


Q ss_pred             cCCcCCccCchhhcC------cCCCCEEECcCCcCcc--cCChhhhCCCCCCEEECCCCc
Q 041300          413 SANKFNNSVPESLGN------LLKLHYLGLSNNQFVL--ELPKELEKLVQLSELDASHNL  464 (716)
Q Consensus       413 s~N~l~~~~~~~~~~------l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~ls~N~  464 (716)
                      ++|.+++..+..|..      ...|+.|++++|.+..  ..|..|..+..++.+++++|+
T Consensus       271 ~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          271 HNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             CSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             CCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            666555544444432      2456677777776642  445666667777777777764

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.98  E-value=5.4e-35  Score=320.43  Aligned_cols=365  Identities=20%  Similarity=0.156  Sum_probs=173.9

Q ss_pred             CCCcEEECCCCCccccCccc-ccCCCCCCEEECcCCcCcc----cCCccccCCCCCCEEEcccccCccCCCcccc-CCC-
Q 041300           76 PQLVHLDLSLNGFFGTIPSQ-IGNLTKLSYISLDSNQLSG----KIPAEVGLLTHLKVLSFQFNELDGSIPPEVC-QLS-  148 (716)
Q Consensus        76 ~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~-  148 (716)
                      ++|++|||++|++....... +..+++|++|+|++|.++.    .++..+..+++|++|+|++|.+....+..+. .++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            45667777777765443332 6667777777777777663    2345566667777777777776654333332 344 


Q ss_pred             ---CCceeecccccccC----CCCccccCCcCCcEEEeecccccccccccccCCCCCceeeCCCCCcccCCCCccCEEEe
Q 041300          149 ---SIEELFLYSNHLNG----SLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGL  221 (716)
Q Consensus       149 ---~L~~L~L~~N~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~L~~L~l  221 (716)
                         +|++|+|++|.++.    .++..|..+++|++|++++|.+++..+..+...             .....++|++|++
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~-------------l~~~~~~L~~L~L  149 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEG-------------LLDPQCRLEKLQL  149 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHH-------------HTSTTCCCCEEEC
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHH-------------HhcCCCcceEEEC
Confidence               57777777777663    346666777777777777777664333222110             0111234555555


Q ss_pred             eCCcCcccCCCccccccccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccc-----cCCCCcEEEccCCc
Q 041300          222 MDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLR-----NCTSLIRVRLNGNN  296 (716)
Q Consensus       222 ~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~-----~l~~L~~L~l~~n~  296 (716)
                      ++|.+++.....+                   +..+...+.|+.|++++|.+....+..+.     .+++|+.|++++|.
T Consensus       150 ~~n~l~~~~~~~l-------------------~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~  210 (461)
T 1z7x_W          150 EYCSLSAASCEPL-------------------ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG  210 (461)
T ss_dssp             TTSCCBGGGHHHH-------------------HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC
T ss_pred             CCCCCCHHHHHHH-------------------HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCC
Confidence            5555543221111                   11111122223333333322221111111     13355555555555


Q ss_pred             CCCc----cchhhCCCCCCCEEEccCCcccccc-----CCCCCCCCCCCEEEcccCcCccc----CcccccCCCCCCEEE
Q 041300          297 LTGN----ISEALGLYPNLTFIDLSRNNFYGEI-----SSNWGKCPKLGTLNVSMNNITGG----IPREIGNMSQLQALD  363 (716)
Q Consensus       297 l~~~----~~~~~~~~~~L~~L~Ls~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~  363 (716)
                      ++..    ++..+..+++|++|++++|.+++..     +..+..+++|++|++++|.++..    ++..+..+++|++|+
T Consensus       211 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~  290 (461)
T 1z7x_W          211 VTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELS  290 (461)
T ss_dssp             CBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEE
T ss_pred             CcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEE
Confidence            5542    2334444555555555555554321     11122344555555555554432    233344445555555


Q ss_pred             ccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCcc----CchhhcCcCCCCEEECcCC
Q 041300          364 LSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNS----VPESLGNLLKLHYLGLSNN  439 (716)
Q Consensus       364 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N  439 (716)
                      +++|.+.+..+..+...                   .....++|+.|++++|.+++.    ++..+..+++|++|++++|
T Consensus       291 Ls~n~i~~~~~~~l~~~-------------------l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n  351 (461)
T 1z7x_W          291 LAGNELGDEGARLLCET-------------------LLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN  351 (461)
T ss_dssp             CTTCCCHHHHHHHHHHH-------------------HTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS
T ss_pred             CCCCCCchHHHHHHHHH-------------------hccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC
Confidence            55554443222221110                   001123444555555544433    2333444455555555555


Q ss_pred             cCcccCChhhhC-----CCCCCEEECCCCcCcc----ccchhccCCCCCCEEECcCCcCcc
Q 041300          440 QFVLELPKELEK-----LVQLSELDASHNLFGG----EIPFQICSLKSLEKLNLSHNNLSG  491 (716)
Q Consensus       440 ~l~~~~~~~~~~-----l~~L~~L~ls~N~l~~----~~p~~~~~l~~L~~L~ls~N~l~~  491 (716)
                      ++....+..+..     .++|++|++++|.+++    .+|..+..+++|++|++++|+++.
T Consensus       352 ~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          352 RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             ccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence            554333332221     3455555555555553    445555555555556665555543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.98  E-value=1.9e-32  Score=284.72  Aligned_cols=279  Identities=20%  Similarity=0.243  Sum_probs=152.3

Q ss_pred             hHHHHHHHHHHhhcccCCCCCCCCCcCCCCCCCCCCCCcceeeeeeCCCCCEEEEEcCCCCCccccCCCCCCCCCCCcEE
Q 041300            2 NEEADALLKWKASLQSHNQSLLPSWTNASTNVSSKISPCAWYGISCNDAGRVTNISLRNTGLSGTLRDFSFSSFPQLVHL   81 (716)
Q Consensus         2 ~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~c~w~gv~c~~~~~v~~l~l~~~~l~~~~~~~~f~~l~~L~~L   81 (716)
                      .+|++||++||.++..++.+.+.+|..+.   ....++|.|.|+.|+...             ..+   .....+.++.|
T Consensus        26 ~~~~~aLl~~k~~~~~~~~~~~~~w~~~~---~~~~~~~~~~g~~~~~~~-------------~~l---~~~~~~~l~~L   86 (328)
T 4fcg_A           26 RPYHDVLSQWQRHYNADRNRWHSAWRQAN---SNNPQIETRTGRALKATA-------------DLL---EDATQPGRVAL   86 (328)
T ss_dssp             CCHHHHHHHHHHHHHHCCTTHHHHHHHHT---TTCTTSCCSHHHHHHHHH-------------HHH---HHHTSTTCCEE
T ss_pred             chHHHHHHHHHHhccCCchhhhhhhcccc---cccccccccCCcchhhhH-------------HHH---hcccccceeEE
Confidence            46889999999998667766667783111   012378999999995210             000   00123445555


Q ss_pred             ECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcccccCccCCCccccCCCCCceeeccccccc
Q 041300           82 DLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLN  161 (716)
Q Consensus        82 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  161 (716)
                      +|++|.+. .+|..+..+++|++|+|++|.++ .+|..++.+++|++|+|++|.++ .+|..+..+++|++|+|++|.+.
T Consensus        87 ~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~  163 (328)
T 4fcg_A           87 ELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPEL  163 (328)
T ss_dssp             EEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTC
T ss_pred             EccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCc
Confidence            55555555 34444555666666666666655 55555555666666666666555 44555555566666666655555


Q ss_pred             CCCCcccc---------CCcCCcEEEeecccccccccccccCCCCCceeeCCCCCcccCCCCccCEEEeeCCcCcccCCC
Q 041300          162 GSLPPFLG---------NLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPP  232 (716)
Q Consensus       162 ~~~p~~~~---------~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  232 (716)
                      +.+|..+.         ++++|++|++++|.++ .+|..                  +.++++|++|++++|.+++. |+
T Consensus       164 ~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~------------------l~~l~~L~~L~L~~N~l~~l-~~  223 (328)
T 4fcg_A          164 TELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPAS------------------IANLQNLKSLKIRNSPLSAL-GP  223 (328)
T ss_dssp             CCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGG------------------GGGCTTCCEEEEESSCCCCC-CG
T ss_pred             cccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHh------------------hcCCCCCCEEEccCCCCCcC-ch
Confidence            55555443         3666666666666655 22222                  23333556666666665532 22


Q ss_pred             ccccccccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCC
Q 041300          233 SFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLT  312 (716)
Q Consensus       233 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~  312 (716)
                      .                       +..++.|+.|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+..+++|+
T Consensus       224 ~-----------------------l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~  280 (328)
T 4fcg_A          224 A-----------------------IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLE  280 (328)
T ss_dssp             G-----------------------GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCC
T ss_pred             h-----------------------hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCC
Confidence            2                       22333344444444444444444455555555555555555555555555555555


Q ss_pred             EEEccCCccccccCCCCCCCCCCCEEEcccCcC
Q 041300          313 FIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNI  345 (716)
Q Consensus       313 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  345 (716)
                      +|+|++|.+.+.+|..+..+++|+.+++..+.+
T Consensus       281 ~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          281 KLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ  313 (328)
T ss_dssp             EEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred             EEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence            555555555555555555555555555554443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=7.2e-35  Score=319.44  Aligned_cols=361  Identities=21%  Similarity=0.214  Sum_probs=244.6

Q ss_pred             CCCCEEECcCCcCcccCCcc-ccCCCCCCEEEcccccCcc----CCCccccCCCCCceeecccccccCCCCccc-cCCc-
Q 041300          100 TKLSYISLDSNQLSGKIPAE-VGLLTHLKVLSFQFNELDG----SIPPEVCQLSSIEELFLYSNHLNGSLPPFL-GNLS-  172 (716)
Q Consensus       100 ~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~-~~l~-  172 (716)
                      ++|++|+|++|.++...... +..+++|++|+|++|.++.    .++..+..+++|++|+|++|.++...+..+ ..++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            46788888888887544333 6778888888888888774    345566777888888888888765444333 2344 


Q ss_pred             ---CCcEEEeecccccccccccccCCCCCceeeCCCCCcccCCCCccCEEEeeCCcCcccCCCccccccccEEEccCCcC
Q 041300          173 ---NIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHF  249 (716)
Q Consensus       173 ---~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l  249 (716)
                         +|++|++++|.++......              ++..+..+++|++|++++|.+.+..+.                 
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~--------------l~~~l~~~~~L~~L~Ls~n~i~~~~~~-----------------  131 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGV--------------LSSTLRTLPTLQELHLSDNLLGDAGLQ-----------------  131 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHH--------------HHHHTTSCTTCCEEECCSSBCHHHHHH-----------------
T ss_pred             CCCceeEEEccCCCCCHHHHHH--------------HHHHHccCCceeEEECCCCcCchHHHH-----------------
Confidence               5777777777766321100              112233344666666666655432111                 


Q ss_pred             ccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCcc----chhhCCCCCCCEEEccCCcccccc
Q 041300          250 TGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNI----SEALGLYPNLTFIDLSRNNFYGEI  325 (716)
Q Consensus       250 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~Ls~n~l~~~~  325 (716)
                            .+..                   ......++|++|++++|+++...    +..+..+++|++|++++|.++...
T Consensus       132 ------~l~~-------------------~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~  186 (461)
T 1z7x_W          132 ------LLCE-------------------GLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAG  186 (461)
T ss_dssp             ------HHHH-------------------HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred             ------HHHH-------------------HHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHH
Confidence                  1110                   00111234555555555554422    334445566666666666665433


Q ss_pred             CCCCC-----CCCCCCEEEcccCcCccc----CcccccCCCCCCEEEccCCcccccc-----CcccCCCCCCcEEEccCC
Q 041300          326 SSNWG-----KCPKLGTLNVSMNNITGG----IPREIGNMSQLQALDLSLNHIVGEI-----PKELGKLNSLTKLILRGN  391 (716)
Q Consensus       326 ~~~~~-----~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~L~~N  391 (716)
                      +..+.     ..++|++|++++|.+++.    ++..+..+++|++|++++|.+++..     +..+..+++|+.|++++|
T Consensus       187 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n  266 (461)
T 1z7x_W          187 VRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC  266 (461)
T ss_dssp             HHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             HHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC
Confidence            32222     245777788888777753    4666777888888888888887543     223345788999999999


Q ss_pred             ccccc----CCcccCCCCCCCEEEccCCcCCccCchhhcC-----cCCCCEEECcCCcCccc----CChhhhCCCCCCEE
Q 041300          392 QLTGR----LPTEIGSLIELEYLDFSANKFNNSVPESLGN-----LLKLHYLGLSNNQFVLE----LPKELEKLVQLSEL  458 (716)
Q Consensus       392 ~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L  458 (716)
                      ++++.    ++..+..+++|++|++++|.+.+..+..+..     .++|+.|++++|.++..    ++..+..+++|++|
T Consensus       267 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L  346 (461)
T 1z7x_W          267 GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLEL  346 (461)
T ss_dssp             CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEE
T ss_pred             CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEE
Confidence            98854    5666777899999999999997655544443     36999999999999865    45667788999999


Q ss_pred             ECCCCcCccccchhccC-----CCCCCEEECcCCcCcc----cCCcCCcCCCCCCEEEccCCccccc
Q 041300          459 DASHNLFGGEIPFQICS-----LKSLEKLNLSHNNLSG----LIPNCFEGMHGLSIIDISDNQLQGP  516 (716)
Q Consensus       459 ~ls~N~l~~~~p~~~~~-----l~~L~~L~ls~N~l~~----~~~~~~~~~~~L~~l~ls~N~l~~~  516 (716)
                      ++++|.+++..+..+..     .++|+.|++++|+++.    .+|..+..+++|+.||+++|++++.
T Consensus       347 ~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          347 QISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA  413 (461)
T ss_dssp             ECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred             EccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence            99999998776655543     6799999999999986    6788888899999999999998753

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=2.1e-29  Score=265.50  Aligned_cols=281  Identities=17%  Similarity=0.143  Sum_probs=189.9

Q ss_pred             CCcceeeeeeCCCCCEEEEEcCCCCCccccCCCCCCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCC
Q 041300           38 SPCAWYGISCNDAGRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIP  117 (716)
Q Consensus        38 ~~c~w~gv~c~~~~~v~~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  117 (716)
                      .+|.|.|+ |+         .+++++. .++. .+  .++|++|++++|.+.++.+..|.++++|++|+|++|.+++..|
T Consensus        28 ~~C~~~~~-c~---------~~~~~l~-~iP~-~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~   93 (353)
T 2z80_A           28 LSCDRNGI-CK---------GSSGSLN-SIPS-GL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEE   93 (353)
T ss_dssp             CEECTTSE-EE---------CCSTTCS-SCCT-TC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECT
T ss_pred             CCCCCCeE-ee---------CCCCCcc-cccc-cc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCH
Confidence            56888887 64         4556665 3433 22  3589999999999998888889999999999999999998888


Q ss_pred             ccccCCCCCCEEEcccccCccCCCccccCCCCCceeecccccccCCCC-ccccCCcCCcEEEeeccc-ccccccccccCC
Q 041300          118 AEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLP-PFLGNLSNIVRLYINNNS-LSGSILTNIGNL  195 (716)
Q Consensus       118 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l  195 (716)
                      ..|+.+++|++|+|++|.+++..+..|.++++|++|++++|.++...+ ..|.++++|++|++++|. +++..+..+   
T Consensus        94 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~---  170 (353)
T 2z80_A           94 DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF---  170 (353)
T ss_dssp             TTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT---
T ss_pred             hhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHc---
Confidence            899999999999999999997666669999999999999999986655 588999999999999984 554333333   


Q ss_pred             CCCceeeCCCCCcccCCCCccCEEEeeCCcCcccCCCccccc-cccEEEccCCcCccccCccccCCCCccEEEecCCccc
Q 041300          196 KFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNS-MLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQ  274 (716)
Q Consensus       196 ~~L~~L~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  274 (716)
                                     ..+++|++|++++|.+.+..|..+... +|++|++++|.++......+..++.|+.|++++|.++
T Consensus       171 ---------------~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~  235 (353)
T 2z80_A          171 ---------------AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLD  235 (353)
T ss_dssp             ---------------TTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCT
T ss_pred             ---------------cCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccc
Confidence                           445577888888888777666666543 5677777776665443333334555666666666555


Q ss_pred             ccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCcccc----ccCCCCCCCCCCCEEEcccCcCcccCc
Q 041300          275 GTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYG----EISSNWGKCPKLGTLNVSMNNITGGIP  350 (716)
Q Consensus       275 ~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~  350 (716)
                      +..+..+..                     ....+.++.++++++.+.+    .+|..+..+++|+.|++++|+++...+
T Consensus       236 ~~~~~~l~~---------------------~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~  294 (353)
T 2z80_A          236 TFHFSELST---------------------GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPD  294 (353)
T ss_dssp             TCCCC---------------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCT
T ss_pred             ccccccccc---------------------ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCH
Confidence            443332221                     1123344455555554443    233344555566666666666653333


Q ss_pred             ccccCCCCCCEEEccCCcccc
Q 041300          351 REIGNMSQLQALDLSLNHIVG  371 (716)
Q Consensus       351 ~~~~~l~~L~~L~L~~n~l~~  371 (716)
                      ..|..+++|++|++++|.+.+
T Consensus       295 ~~~~~l~~L~~L~L~~N~~~~  315 (353)
T 2z80_A          295 GIFDRLTSLQKIWLHTNPWDC  315 (353)
T ss_dssp             TTTTTCTTCCEEECCSSCBCC
T ss_pred             HHHhcCCCCCEEEeeCCCccC
Confidence            334566666666666666654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=2.3e-29  Score=259.73  Aligned_cols=250  Identities=21%  Similarity=0.263  Sum_probs=199.4

Q ss_pred             EEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccc--cCCCCCCCCCCCEEEccc
Q 041300          265 AFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGE--ISSNWGKCPKLGTLNVSM  342 (716)
Q Consensus       265 ~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~  342 (716)
                      .++++++.++ .+|..+.  ++|+.|++++|+++...+..|..+++|++|++++|.++..  .+..+..+++|++|++++
T Consensus        11 ~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~   87 (306)
T 2z66_A           11 EIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF   87 (306)
T ss_dssp             EEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred             EEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence            3444444444 2333322  5677788888887766666677788888888888877643  244556678888888888


Q ss_pred             CcCcccCcccccCCCCCCEEEccCCccccccC-cccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCc-c
Q 041300          343 NNITGGIPREIGNMSQLQALDLSLNHIVGEIP-KELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNN-S  420 (716)
Q Consensus       343 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~  420 (716)
                      |.++. +|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+ .
T Consensus        88 n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  166 (306)
T 2z66_A           88 NGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF  166 (306)
T ss_dssp             CSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred             Ccccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence            88874 56668888888888888888886554 568888889999999998888888888888899999999998876 5


Q ss_pred             CchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCCcCC
Q 041300          421 VPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGM  500 (716)
Q Consensus       421 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~  500 (716)
                      .|..+..+++|++|++++|++++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..|..+..+
T Consensus       167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~  246 (306)
T 2z66_A          167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF  246 (306)
T ss_dssp             ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCC
T ss_pred             chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhh
Confidence            77888888999999999999988888888889999999999999988777788889999999999999999888888888


Q ss_pred             C-CCCEEEccCCcccccCC
Q 041300          501 H-GLSIIDISDNQLQGPVP  518 (716)
Q Consensus       501 ~-~L~~l~ls~N~l~~~~p  518 (716)
                      + +|+.|++++|++++..+
T Consensus       247 ~~~L~~L~L~~N~~~~~c~  265 (306)
T 2z66_A          247 PSSLAFLNLTQNDFACTCE  265 (306)
T ss_dssp             CTTCCEEECTTCCEECSGG
T ss_pred             hccCCEEEccCCCeecccC
Confidence            4 89999999999987644

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=1.4e-29  Score=266.92  Aligned_cols=279  Identities=17%  Similarity=0.156  Sum_probs=162.5

Q ss_pred             ccCEEEeeCCcCcccCCCccccccccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEccC
Q 041300          215 NLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNG  294 (716)
Q Consensus       215 ~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~  294 (716)
                      .....+++++.++. +|..+. ..+++|++++|.+++..+..+.                        ++++|+.|++++
T Consensus        32 ~~~~c~~~~~~l~~-iP~~~~-~~L~~L~l~~n~i~~~~~~~~~------------------------~l~~L~~L~L~~   85 (353)
T 2z80_A           32 RNGICKGSSGSLNS-IPSGLT-EAVKSLDLSNNRITYISNSDLQ------------------------RCVNLQALVLTS   85 (353)
T ss_dssp             TTSEEECCSTTCSS-CCTTCC-TTCCEEECTTSCCCEECTTTTT------------------------TCTTCCEEECTT
T ss_pred             CCeEeeCCCCCccc-cccccc-ccCcEEECCCCcCcccCHHHhc------------------------cCCCCCEEECCC
Confidence            33445666666653 333222 2455555555555554444444                        444555555555


Q ss_pred             CcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCc-ccccCCCCCCEEEccCC-ccccc
Q 041300          295 NNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIP-REIGNMSQLQALDLSLN-HIVGE  372 (716)
Q Consensus       295 n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~  372 (716)
                      |++++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|++++..+ ..+..+++|++|++++| .+.+.
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~  165 (353)
T 2z80_A           86 NGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI  165 (353)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE
T ss_pred             CccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccccc
Confidence            55444444444445555555555555544333334445555555555555543322 24555555555555555 34444


Q ss_pred             cCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhh--
Q 041300          373 IPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELE--  450 (716)
Q Consensus       373 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--  450 (716)
                      .+..+..+++|+.|++++|++++..|..+..+++|++|++++|.+....+..+..+++|+.|++++|.+++..+..+.  
T Consensus       166 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  245 (353)
T 2z80_A          166 QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTG  245 (353)
T ss_dssp             CTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-----
T ss_pred             CHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccc
Confidence            445555556666666666666555555566666666666666665433333334456666666666666544333322  


Q ss_pred             -CCCCCCEEECCCCcCcc----ccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCcccccCCC
Q 041300          451 -KLVQLSELDASHNLFGG----EIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPN  519 (716)
Q Consensus       451 -~l~~L~~L~ls~N~l~~----~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~~p~  519 (716)
                       ....++.++++++.+.+    .+|..+..+++|+.|++++|+++.+.+..|..+++|+.|++++|++.+.+|.
T Consensus       246 ~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~  319 (353)
T 2z80_A          246 ETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  319 (353)
T ss_dssp             -CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             cccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence             34567777777777765    3677788899999999999999966556678999999999999999987764

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=3.3e-28  Score=265.20  Aligned_cols=250  Identities=22%  Similarity=0.237  Sum_probs=203.9

Q ss_pred             cEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccC
Q 041300          264 EAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMN  343 (716)
Q Consensus       264 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  343 (716)
                      ..++.+++.++ .+|..+.  ++++.|+|++|++++..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|
T Consensus        57 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n  133 (452)
T 3zyi_A           57 SKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN  133 (452)
T ss_dssp             CEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             cEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence            34455555554 3444332  57788888888888877888888888888888888888887788888888888888888


Q ss_pred             cCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccC-CcccccCCcccCCCCCCCEEEccCCcCCccCc
Q 041300          344 NITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRG-NQLTGRLPTEIGSLIELEYLDFSANKFNNSVP  422 (716)
Q Consensus       344 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  422 (716)
                      ++++..+..|..+++|++|+|++|++....+..|..+++|+.|++++ |.+....+..+.++++|++|+|++|.+++. |
T Consensus       134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~  212 (452)
T 3zyi_A          134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P  212 (452)
T ss_dssp             CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C
T ss_pred             cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c
Confidence            88877777788888888888888888876667788888888888888 455544445688888999999999988754 3


Q ss_pred             hhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCCcCCCC
Q 041300          423 ESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHG  502 (716)
Q Consensus       423 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~  502 (716)
                       .+..+++|+.|+|++|++++..|..|.++++|+.|++++|++++..|..|..+++|+.|+|++|+|++..+..|..+++
T Consensus       213 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  291 (452)
T 3zyi_A          213 -NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRY  291 (452)
T ss_dssp             -CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTT
T ss_pred             -cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccC
Confidence             4778889999999999998888888999999999999999999888888999999999999999999888888899999


Q ss_pred             CCEEEccCCcccccCC
Q 041300          503 LSIIDISDNQLQGPVP  518 (716)
Q Consensus       503 L~~l~ls~N~l~~~~p  518 (716)
                      |+.|++++|++.+...
T Consensus       292 L~~L~L~~Np~~CdC~  307 (452)
T 3zyi_A          292 LVELHLHHNPWNCDCD  307 (452)
T ss_dssp             CCEEECCSSCEECSTT
T ss_pred             CCEEEccCCCcCCCCC
Confidence            9999999999887654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=4.9e-28  Score=262.86  Aligned_cols=249  Identities=23%  Similarity=0.271  Sum_probs=192.5

Q ss_pred             EEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCc
Q 041300          265 AFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNN  344 (716)
Q Consensus       265 ~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  344 (716)
                      .++.+++.++ .+|..+.  ++++.|+|++|++++..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|+
T Consensus        47 ~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~  123 (440)
T 3zyj_A           47 KVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR  123 (440)
T ss_dssp             EEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred             EEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence            4444555544 3344333  567777777777777777777777778888888877777766777777888888888888


Q ss_pred             CcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccC-CcccccCCcccCCCCCCCEEEccCCcCCccCch
Q 041300          345 ITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRG-NQLTGRLPTEIGSLIELEYLDFSANKFNNSVPE  423 (716)
Q Consensus       345 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  423 (716)
                      ++...+..|..+++|++|++++|.+....+..|..+++|+.|++++ |.+....+..|.++++|++|+|++|.++. +| 
T Consensus       124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-  201 (440)
T 3zyj_A          124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-  201 (440)
T ss_dssp             CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-
T ss_pred             CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-
Confidence            7766666777788888888888888766666777888888888887 44444444467788888888888888874 34 


Q ss_pred             hhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCC
Q 041300          424 SLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGL  503 (716)
Q Consensus       424 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L  503 (716)
                      .+..+++|+.|+|++|++++..|..|.++++|+.|++++|++++..+..|..+++|+.|+|++|+|+...+..|..+++|
T Consensus       202 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  281 (440)
T 3zyj_A          202 NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL  281 (440)
T ss_dssp             CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTC
T ss_pred             ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCC
Confidence            47778888888888888888888888888889999999998888888888888999999999999998888888888999


Q ss_pred             CEEEccCCcccccCC
Q 041300          504 SIIDISDNQLQGPVP  518 (716)
Q Consensus       504 ~~l~ls~N~l~~~~p  518 (716)
                      +.|++++|++.+...
T Consensus       282 ~~L~L~~Np~~CdC~  296 (440)
T 3zyj_A          282 ERIHLHHNPWNCNCD  296 (440)
T ss_dssp             CEEECCSSCEECSST
T ss_pred             CEEEcCCCCccCCCC
Confidence            999999999876543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.96  E-value=2.5e-30  Score=283.36  Aligned_cols=216  Identities=20%  Similarity=0.219  Sum_probs=143.5

Q ss_pred             CCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEc
Q 041300          285 TSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDL  364 (716)
Q Consensus       285 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  364 (716)
                      ++|+.|+|++|.+++..+..|..+++|++|+|++|.+++..+  +..+++|++|+|++|.+++..+     .++|++|++
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L  106 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA  106 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence            356666666666666666666666666666666666665544  6666667777777666664322     266777777


Q ss_pred             cCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhc-CcCCCCEEECcCCcCcc
Q 041300          365 SLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLG-NLLKLHYLGLSNNQFVL  443 (716)
Q Consensus       365 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~  443 (716)
                      ++|.+++..+.   .+++|+.|++++|.+++..|..+..+++|+.|+|++|.+++..|..+. .+++|+.|+|++|.+++
T Consensus       107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~  183 (487)
T 3oja_A          107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD  183 (487)
T ss_dssp             CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence            77777654433   345677777777777766666667777777777777777766666654 56777777777777765


Q ss_pred             cCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCccc
Q 041300          444 ELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQ  514 (716)
Q Consensus       444 ~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~  514 (716)
                      ..+  +..+++|+.|+|++|.+++..| .+..+++|+.|++++|+|++ +|..+..+++|+.|++++|++.
T Consensus       184 ~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          184 VKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             EEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred             ccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence            422  2346777777777777775444 36677777777777777775 4555677777777777777776

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=1.5e-28  Score=253.51  Aligned_cols=257  Identities=22%  Similarity=0.238  Sum_probs=174.4

Q ss_pred             CccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCc--cchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEE
Q 041300          262 LLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGN--ISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLN  339 (716)
Q Consensus       262 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  339 (716)
                      .++.|++++|+++...+..|.++++|+.|++++|.++..  .+..+..+++|++|++++|.+.. ++..+..+++|++|+
T Consensus        29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~  107 (306)
T 2z66_A           29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLD  107 (306)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEEE
T ss_pred             CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEEE
Confidence            455555555555544444566667777777777776633  24455566777777777777764 344466777777777


Q ss_pred             cccCcCcccCc-ccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccc-cCCcccCCCCCCCEEEccCCcC
Q 041300          340 VSMNNITGGIP-REIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTG-RLPTEIGSLIELEYLDFSANKF  417 (716)
Q Consensus       340 L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l  417 (716)
                      +++|++++..+ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++ ..|..+..+++|++|++++|.+
T Consensus       108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l  187 (306)
T 2z66_A          108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL  187 (306)
T ss_dssp             CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred             CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCc
Confidence            77777775544 466777777777777777777777777777777777777777765 4667777777888888888887


Q ss_pred             CccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCC-CCCEEECcCCcCcccCC--
Q 041300          418 NNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLK-SLEKLNLSHNNLSGLIP--  494 (716)
Q Consensus       418 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~-~L~~L~ls~N~l~~~~~--  494 (716)
                      ++..|..+..+++|+.|++++|++++..+..+..+++|+.|++++|.+++..|..+..++ +|+.|++++|.+++.-+  
T Consensus       188 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~  267 (306)
T 2z66_A          188 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ  267 (306)
T ss_dssp             CEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGH
T ss_pred             CCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChH
Confidence            777677777777888888888887766666777777888888888888777777777774 78888888888765321  


Q ss_pred             cCCcCCCCCCEEEccCCcccccCCC
Q 041300          495 NCFEGMHGLSIIDISDNQLQGPVPN  519 (716)
Q Consensus       495 ~~~~~~~~L~~l~ls~N~l~~~~p~  519 (716)
                      .....+...+.+....+.+.+..|.
T Consensus       268 ~~~~~l~~~~~~~~~~~~~~C~~p~  292 (306)
T 2z66_A          268 SFLQWIKDQRQLLVEVERMECATPS  292 (306)
T ss_dssp             HHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred             HHHHHHHhhhhhhccccccccCCch
Confidence            1111122333444555666555443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=7.4e-31  Score=297.06  Aligned_cols=433  Identities=15%  Similarity=0.122  Sum_probs=240.1

Q ss_pred             CCcceeeeeeCCCCCEEEEEcCCCCCccccCCCCCCCCCCCcEEECCCCCc---cccCccccc------------CCCCC
Q 041300           38 SPCAWYGISCNDAGRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGF---FGTIPSQIG------------NLTKL  102 (716)
Q Consensus        38 ~~c~w~gv~c~~~~~v~~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i---~~~~~~~~~------------~l~~L  102 (716)
                      .|+.|.++.+...   ..+.+.+. .. ...+..+..+++|++|+|+++..   .+.+|..++            .+++|
T Consensus        40 vck~W~~~~~~~~---~~l~~~~~-~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L  114 (592)
T 3ogk_B           40 VCRRWFKIDSETR---EHVTMALC-YT-ATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQL  114 (592)
T ss_dssp             SCHHHHHHHHHHC---CEEEESCG-GG-SCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTC
T ss_pred             HhHHHHHhhhccc---cEEEEeec-cc-cChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCC
Confidence            4558999864321   22333322 11 11123456678899999987643   123333332            67888


Q ss_pred             CEEECcCCcCcccCCccccCC--CCCCEEEccccc-Ccc-CCCccccCCCCCceeecccccccCC----CCccccCCcCC
Q 041300          103 SYISLDSNQLSGKIPAEVGLL--THLKVLSFQFNE-LDG-SIPPEVCQLSSIEELFLYSNHLNGS----LPPFLGNLSNI  174 (716)
Q Consensus       103 ~~L~Ls~N~l~~~~p~~~~~l--~~L~~L~L~~N~-l~~-~~~~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L  174 (716)
                      ++|+|++|.+++..+..+...  .+|++|+|++|. +.. .++.....+++|++|+|++|.+++.    ++..+.++++|
T Consensus       115 ~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L  194 (592)
T 3ogk_B          115 KSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSL  194 (592)
T ss_dssp             CEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCC
T ss_pred             CeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCc
Confidence            888888888876666666553  348888888876 211 1122234678888888888887655    23345567888


Q ss_pred             cEEEeecccccccccccccCCCCCceeeCCCCCcccCCCCccCEEEeeCCcCcccCCCcccc-ccccEEEccCCcCc---
Q 041300          175 VRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGN-SMLTWLTLSGNHFT---  250 (716)
Q Consensus       175 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~---  250 (716)
                      ++|++++|.+++.....+              +..+.++++|++|++++|.+.+ +|..+.. .+|+.|+++.....   
T Consensus       195 ~~L~L~~n~~~~~~~~~l--------------~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~  259 (592)
T 3ogk_B          195 EVLNFYMTEFAKISPKDL--------------ETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGM  259 (592)
T ss_dssp             CEEECTTCCCSSCCHHHH--------------HHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTC
T ss_pred             cEEEeeccCCCccCHHHH--------------HHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccch
Confidence            888888887763221111              1112234466666666666554 2233322 25666666542221   


Q ss_pred             cccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccc-hhhCCCCCCCEEEccCCcccc-ccCCC
Q 041300          251 GYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNIS-EALGLYPNLTFIDLSRNNFYG-EISSN  328 (716)
Q Consensus       251 ~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~Ls~n~l~~-~~~~~  328 (716)
                      ...+..+..+++|+.+.++++. ...+|..+..+++|+.|++++|.++.... ..+..+++|++|+++ +.+.. .++..
T Consensus       260 ~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~  337 (592)
T 3ogk_B          260 PEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVL  337 (592)
T ss_dssp             TTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHH
T ss_pred             HHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHH
Confidence            1222334445566666666542 23455566666777777777776554332 334666777777776 33332 22223


Q ss_pred             CCCCCCCCEEEcc-----------cCcCccc-CcccccCCCCCCEEEccCCccccccCcccCC-CCCCcEEEcc----CC
Q 041300          329 WGKCPKLGTLNVS-----------MNNITGG-IPREIGNMSQLQALDLSLNHIVGEIPKELGK-LNSLTKLILR----GN  391 (716)
Q Consensus       329 ~~~l~~L~~L~L~-----------~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~----~N  391 (716)
                      +..+++|++|+++           .|.+++. ++.....+++|++|+++.|.+++..+..+.. +++|+.|+++    .|
T Consensus       338 ~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n  417 (592)
T 3ogk_B          338 AQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREE  417 (592)
T ss_dssp             HHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCS
T ss_pred             HHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCc
Confidence            3456667777777           2445432 1222344667777777666666555544443 6667777774    45


Q ss_pred             ccccc-----CCcccCCCCCCCEEEccCCc--CCccCchhhc-CcCCCCEEECcCCcCcc-cCChhhhCCCCCCEEECCC
Q 041300          392 QLTGR-----LPTEIGSLIELEYLDFSANK--FNNSVPESLG-NLLKLHYLGLSNNQFVL-ELPKELEKLVQLSELDASH  462 (716)
Q Consensus       392 ~l~~~-----~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~-~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~ls~  462 (716)
                      .+++.     ++..+.++++|+.|++++|.  +++..+..+. .+++|++|++++|++++ .++..+..+++|++|++++
T Consensus       418 ~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~  497 (592)
T 3ogk_B          418 RITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRG  497 (592)
T ss_dssp             CCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEES
T ss_pred             cccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccC
Confidence            55532     22224456666666665432  4443333332 35666666666666654 2333345566666666666


Q ss_pred             CcCccc-cchhccCCCCCCEEECcCCcCccc
Q 041300          463 NLFGGE-IPFQICSLKSLEKLNLSHNNLSGL  492 (716)
Q Consensus       463 N~l~~~-~p~~~~~l~~L~~L~ls~N~l~~~  492 (716)
                      |.+++. ++..+..+++|+.|++++|+++..
T Consensus       498 n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          498 CCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             CCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             CCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            666543 233334566666666666666543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=3.1e-28  Score=248.38  Aligned_cols=210  Identities=22%  Similarity=0.210  Sum_probs=133.8

Q ss_pred             CCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCc-cccccCcccCCCCCCcEEE
Q 041300          309 PNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNH-IVGEIPKELGKLNSLTKLI  387 (716)
Q Consensus       309 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~  387 (716)
                      ++|++|++++|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|. +....|..+..+++|++|+
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~  111 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence            455666666666655555555566666666666666665555566666666666666665 5544455566666666666


Q ss_pred             ccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCcc
Q 041300          388 LRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGG  467 (716)
Q Consensus       388 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~  467 (716)
                      +++|++++..|..+..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|++++|.+++
T Consensus       112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  191 (285)
T 1ozn_A          112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH  191 (285)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence            66666665555556666666666666666665555556666666666666666665555556666667777777777666


Q ss_pred             ccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCcccccCC
Q 041300          468 EIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVP  518 (716)
Q Consensus       468 ~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~~p  518 (716)
                      ..|..+..+++|+.|++++|++++..+..|..+++|+.|++++|++.+..+
T Consensus       192 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~  242 (285)
T 1ozn_A          192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (285)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence            666666667777777777777766655666667777777777777765444

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=4.7e-28  Score=247.05  Aligned_cols=207  Identities=21%  Similarity=0.198  Sum_probs=124.9

Q ss_pred             CCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCc-CcccCcccccCCCCCCEEE
Q 041300          285 TSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNN-ITGGIPREIGNMSQLQALD  363 (716)
Q Consensus       285 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~  363 (716)
                      ++|+.|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|. ++...|..+..+++|++|+
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~  111 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence            355555555555555555555555566666666666555555555556666666666664 5544455556666666666


Q ss_pred             ccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcc
Q 041300          364 LSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVL  443 (716)
Q Consensus       364 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  443 (716)
                      +++|.+++..|..+..+++|++|++++|++++..+..+..+++|+.|+|++|.+++..+..+..+++|+.|++++|++++
T Consensus       112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  191 (285)
T 1ozn_A          112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH  191 (285)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence            66666665555556666666666666666665444445666666666666666665555556666666666666666665


Q ss_pred             cCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcc
Q 041300          444 ELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSG  491 (716)
Q Consensus       444 ~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~  491 (716)
                      ..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus       192 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (285)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence            556666666666666666666665555556666666666666666653

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=9.6e-28  Score=249.28  Aligned_cols=225  Identities=20%  Similarity=0.262  Sum_probs=133.6

Q ss_pred             CCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEc
Q 041300          285 TSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDL  364 (716)
Q Consensus       285 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  364 (716)
                      ..++.|++++|.++ .+|..+..+++|++|+|++|.++ .+|..++.+++|++|+|++|.++ .+|..+..+++|++|++
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI  157 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred             cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence            34444444444444 22333333444555555555544 34444445555555555555554 34444555555555555


Q ss_pred             cCCccccccCcccC---------CCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEE
Q 041300          365 SLNHIVGEIPKELG---------KLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLG  435 (716)
Q Consensus       365 ~~n~l~~~~~~~~~---------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  435 (716)
                      ++|.+.+.+|..+.         .+++|++|++++|+++ .+|..+..+++|++|+|++|.+++ +|..+..+++|++|+
T Consensus       158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~  235 (328)
T 4fcg_A          158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELD  235 (328)
T ss_dssp             EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEE
T ss_pred             CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEE
Confidence            55544444444433         3666666666666666 556666666666666666666663 444566666677777


Q ss_pred             CcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCccc
Q 041300          436 LSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQ  514 (716)
Q Consensus       436 Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~  514 (716)
                      +++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+..+++|+.+++..|.+.
T Consensus       236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             CcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            7776666666666666677777777776666666766667777777777777777677777777777777777665544

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=3.3e-27  Score=257.34  Aligned_cols=228  Identities=23%  Similarity=0.210  Sum_probs=169.1

Q ss_pred             CCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEc
Q 041300          261 GLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNV  340 (716)
Q Consensus       261 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  340 (716)
                      +.++.|++++|++++..+..|.++++|+.|+|++|++++..+..|..+++|++|+|++|.+++..+..|..+++|++|+|
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            34555666666666666666667777777777777777666667777777777777777777666666777777777777


Q ss_pred             ccCcCcccCcccccCCCCCCEEEccC-CccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCc
Q 041300          341 SMNNITGGIPREIGNMSQLQALDLSL-NHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNN  419 (716)
Q Consensus       341 ~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  419 (716)
                      ++|+++...+..|..+++|+.|++++ |.+....+..|..+++|+.|++++|++++. | .+..+++|+.|+|++|.+++
T Consensus       155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~  232 (452)
T 3zyi_A          155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPE  232 (452)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSE
T ss_pred             CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcc
Confidence            77777766666777777777777777 444433444577777888888888887743 3 47777888888888888887


Q ss_pred             cCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCc
Q 041300          420 SVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLS  490 (716)
Q Consensus       420 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~  490 (716)
                      ..|..|.++++|+.|++++|++++..+..|..+++|+.|+|++|++++..+..+..+++|+.|++++|.+.
T Consensus       233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence            77888888888888888888888777788888888888888888888777777778888888888888775

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=3.8e-27  Score=255.86  Aligned_cols=228  Identities=22%  Similarity=0.230  Sum_probs=163.9

Q ss_pred             CCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEc
Q 041300          261 GLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNV  340 (716)
Q Consensus       261 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  340 (716)
                      +.++.|++++|++.+..+..|.++++|+.|+|++|.++...+..|..+++|++|+|++|+++...+..|..+++|++|+|
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  143 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL  143 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence            34555555555555555566666677777777777777666666777777777777777777666666777777777777


Q ss_pred             ccCcCcccCcccccCCCCCCEEEccC-CccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCc
Q 041300          341 SMNNITGGIPREIGNMSQLQALDLSL-NHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNN  419 (716)
Q Consensus       341 ~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  419 (716)
                      ++|+++...+..|..+++|++|++++ |.+....+..|..+++|+.|++++|+++ .+| .+..+++|+.|+|++|.+++
T Consensus       144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~  221 (440)
T 3zyj_A          144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSA  221 (440)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCE
T ss_pred             CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCc
Confidence            77777766666677777777777777 3444334446777777777777777776 334 46777778888888888877


Q ss_pred             cCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCc
Q 041300          420 SVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLS  490 (716)
Q Consensus       420 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~  490 (716)
                      ..|..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..+..+++|+.|++++|.+.
T Consensus       222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            77777778888888888888887777777777888888888888888777777777888888888888775

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.95  E-value=2.7e-29  Score=259.53  Aligned_cols=247  Identities=17%  Similarity=0.176  Sum_probs=195.1

Q ss_pred             CCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCC-CccchhhC-------CCCCCCEEEccCCccccccCCCC-
Q 041300          259 RGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLT-GNISEALG-------LYPNLTFIDLSRNNFYGEISSNW-  329 (716)
Q Consensus       259 ~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~-~~~~~~~~-------~~~~L~~L~Ls~n~l~~~~~~~~-  329 (716)
                      ..+.|+.+++++|.+  .+|..+...  |+.|++++|.++ ...+..+.       .+++|++|++++|.+++..|..+ 
T Consensus        41 ~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  116 (312)
T 1wwl_A           41 GGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL  116 (312)
T ss_dssp             EEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred             cCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence            334455566666666  445544433  677777777773 33444443       67889999999999988777765 


Q ss_pred             -CCCCCCCEEEcccCcCcccCcccccCC-----CCCCEEEccCCccccccCcccCCCCCCcEEEccCCccccc--CCccc
Q 041300          330 -GKCPKLGTLNVSMNNITGGIPREIGNM-----SQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGR--LPTEI  401 (716)
Q Consensus       330 -~~l~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~  401 (716)
                       ..+++|++|++++|++++. |..+..+     ++|++|++++|++.+..|..+..+++|++|++++|++.+.  .+..+
T Consensus       117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  195 (312)
T 1wwl_A          117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL  195 (312)
T ss_dssp             SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred             HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence             7889999999999999877 7777776     8999999999999988778899999999999999997754  23334


Q ss_pred             --CCCCCCCEEEccCCcCCcc---CchhhcCcCCCCEEECcCCcCcccCC-hhhhCCCCCCEEECCCCcCccccchhccC
Q 041300          402 --GSLIELEYLDFSANKFNNS---VPESLGNLLKLHYLGLSNNQFVLELP-KELEKLVQLSELDASHNLFGGEIPFQICS  475 (716)
Q Consensus       402 --~~l~~L~~L~Ls~N~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~ls~N~l~~~~p~~~~~  475 (716)
                        ..+++|++|+|++|.+++.   ....+..+++|++|++++|++++..| ..+..+++|++|++++|.++ .+|..+. 
T Consensus       196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-  273 (312)
T 1wwl_A          196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-  273 (312)
T ss_dssp             CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC-
T ss_pred             HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc-
Confidence              7889999999999999832   22445678999999999999987664 45667889999999999998 6777666 


Q ss_pred             CCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCcccc
Q 041300          476 LKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQG  515 (716)
Q Consensus       476 l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~  515 (716)
                       ++|+.|++++|+|++. |. +..+++|+.|++++|++++
T Consensus       274 -~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          274 -AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             -SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             -CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence             8999999999999987 55 8899999999999999976

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=5.1e-30  Score=290.17  Aligned_cols=408  Identities=15%  Similarity=0.057  Sum_probs=294.1

Q ss_pred             CcccccCCCCCCEEECcCCcC---cccCCcccc------------CCCCCCEEEcccccCccCCCccccCC--CCCceee
Q 041300           92 IPSQIGNLTKLSYISLDSNQL---SGKIPAEVG------------LLTHLKVLSFQFNELDGSIPPEVCQL--SSIEELF  154 (716)
Q Consensus        92 ~~~~~~~l~~L~~L~Ls~N~l---~~~~p~~~~------------~l~~L~~L~L~~N~l~~~~~~~~~~l--~~L~~L~  154 (716)
                      .+..+..+++|++|+|+++..   .+.+|..++            .+++|++|+|++|.+++..+..+...  .+|++|+
T Consensus        65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~  144 (592)
T 3ogk_B           65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLK  144 (592)
T ss_dssp             HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEE
T ss_pred             hHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEE
Confidence            345566788899999987542   123333322            67888888888888776656666553  3488888


Q ss_pred             ccccc-ccC-CCCccccCCcCCcEEEeecccccccccccccCCCCCceeeCCCCCcccCCCCccCEEEeeCCcCcccC--
Q 041300          155 LYSNH-LNG-SLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSI--  230 (716)
Q Consensus       155 L~~N~-l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~L~~L~l~~n~l~~~~--  230 (716)
                      |++|. ++. ..+....++++|++|+|++|.+++.....+              +.....+++|++|++++|.+++..  
T Consensus       145 L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l--------------~~~~~~~~~L~~L~L~~n~~~~~~~~  210 (592)
T 3ogk_B          145 LDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWL--------------HELAQHNTSLEVLNFYMTEFAKISPK  210 (592)
T ss_dssp             EESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHH--------------HHHHHHCCCCCEEECTTCCCSSCCHH
T ss_pred             CcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHH--------------HHHHhcCCCccEEEeeccCCCccCHH
Confidence            88876 211 112223467888888888888765421111              112234568999999999887322  


Q ss_pred             --CCccc-cccccEEEccCCcCccccCccccCCCCccEEEecCCccc---ccCCcccccCCCCcEEEccCCcCCCccchh
Q 041300          231 --PPSFG-NSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQ---GTIPESLRNCTSLIRVRLNGNNLTGNISEA  304 (716)
Q Consensus       231 --~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~---~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~  304 (716)
                        +..+. .++|+.|++++|.+.+ ++..+..++.|+.|.++.....   ...+..+..+++|+.|.++++.. ...+..
T Consensus       211 ~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~  288 (592)
T 3ogk_B          211 DLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPIL  288 (592)
T ss_dssp             HHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGG
T ss_pred             HHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHH
Confidence              22222 2479999999999987 4577888999999999864332   33456677889999999988643 456677


Q ss_pred             hCCCCCCCEEEccCCccccccC-CCCCCCCCCCEEEcccCcCc-ccCcccccCCCCCCEEEcc-----------CCcccc
Q 041300          305 LGLYPNLTFIDLSRNNFYGEIS-SNWGKCPKLGTLNVSMNNIT-GGIPREIGNMSQLQALDLS-----------LNHIVG  371 (716)
Q Consensus       305 ~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~-----------~n~l~~  371 (716)
                      +..+++|++|++++|.+++... ..+..+++|+.|+++ +.+. +.++..+..+++|++|+++           .|.+++
T Consensus       289 ~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~  367 (592)
T 3ogk_B          289 FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQ  367 (592)
T ss_dssp             GGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCH
T ss_pred             HhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCH
Confidence            7888999999999999875433 335789999999999 4443 3344455678999999999           466664


Q ss_pred             ccC-cccCCCCCCcEEEccCCcccccCCcccCC-CCCCCEEEcc----CCcCCcc-----CchhhcCcCCCCEEECcCCc
Q 041300          372 EIP-KELGKLNSLTKLILRGNQLTGRLPTEIGS-LIELEYLDFS----ANKFNNS-----VPESLGNLLKLHYLGLSNNQ  440 (716)
Q Consensus       372 ~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~Ls----~N~l~~~-----~~~~~~~l~~L~~L~Ls~N~  440 (716)
                      ... .....+++|++|+++.|++++..+..+.. +++|+.|+++    .|.+++.     ++..+.++++|+.|++++|.
T Consensus       368 ~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~  447 (592)
T 3ogk_B          368 RGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQ  447 (592)
T ss_dssp             HHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCG
T ss_pred             HHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCC
Confidence            322 23456899999999999998776666655 8899999996    7788763     34446789999999998644


Q ss_pred             --CcccCChhhh-CCCCCCEEECCCCcCccc-cchhccCCCCCCEEECcCCcCccc-CCcCCcCCCCCCEEEccCCcccc
Q 041300          441 --FVLELPKELE-KLVQLSELDASHNLFGGE-IPFQICSLKSLEKLNLSHNNLSGL-IPNCFEGMHGLSIIDISDNQLQG  515 (716)
Q Consensus       441 --l~~~~~~~~~-~l~~L~~L~ls~N~l~~~-~p~~~~~l~~L~~L~ls~N~l~~~-~~~~~~~~~~L~~l~ls~N~l~~  515 (716)
                        ++...+..+. .+++|+.|++++|.+++. ++..+..+++|++|++++|.++.. ++..+..+++|+.|++++|+++.
T Consensus       448 ~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~  527 (592)
T 3ogk_B          448 GGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM  527 (592)
T ss_dssp             GGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred             CCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence              6655444444 478999999999999863 455668899999999999998754 34445678999999999999875


Q ss_pred             c
Q 041300          516 P  516 (716)
Q Consensus       516 ~  516 (716)
                      .
T Consensus       528 ~  528 (592)
T 3ogk_B          528 T  528 (592)
T ss_dssp             T
T ss_pred             H
Confidence            3

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.95  E-value=8.3e-29  Score=256.51  Aligned_cols=257  Identities=19%  Similarity=0.156  Sum_probs=164.6

Q ss_pred             ccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccC
Q 041300          239 LTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSR  318 (716)
Q Consensus       239 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~  318 (716)
                      ++..+++.+.+.......+...+.|+.|++++|.+++..|..|.++++|+.|++++|.+++..+  +..+++|++|++++
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~   89 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN   89 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence            4455566666655444444455566667777776666666666777777777777777765543  66677777777777


Q ss_pred             CccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCC
Q 041300          319 NNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLP  398 (716)
Q Consensus       319 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  398 (716)
                      |.+++..+     .++|++|++++|++++..+.   .+++|++|++++|++++..+..+..+++|+.|++++|++++..+
T Consensus        90 n~l~~l~~-----~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  161 (317)
T 3o53_A           90 NYVQELLV-----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF  161 (317)
T ss_dssp             SEEEEEEE-----CTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred             CccccccC-----CCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence            77665432     26677777777777655433   24567777777777766656666667777777777777766555


Q ss_pred             ccc-CCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCC
Q 041300          399 TEI-GSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLK  477 (716)
Q Consensus       399 ~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~  477 (716)
                      ..+ ..+++|++|+|++|.+++. + ....+++|++|++++|++++ +|..+..+++|+.|++++|.++ .+|..+..++
T Consensus       162 ~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~  237 (317)
T 3o53_A          162 AELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ  237 (317)
T ss_dssp             GGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCT
T ss_pred             HHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCC
Confidence            554 3566777777777777644 2 22236667777777777764 3334666677777777777776 3555666667


Q ss_pred             CCCEEECcCCcCc-ccCCcCCcCCCCCCEEEcc
Q 041300          478 SLEKLNLSHNNLS-GLIPNCFEGMHGLSIIDIS  509 (716)
Q Consensus       478 ~L~~L~ls~N~l~-~~~~~~~~~~~~L~~l~ls  509 (716)
                      +|+.|++++|++. +.+|..+..++.|+.++++
T Consensus       238 ~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             TCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred             CCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence            7777777777776 5555666666666666666

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.95  E-value=4.3e-27  Score=262.73  Aligned_cols=86  Identities=29%  Similarity=0.342  Sum_probs=45.8

Q ss_pred             CCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEEC
Q 041300          357 SQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGL  436 (716)
Q Consensus       357 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  436 (716)
                      ++|+.|++++|.+++ +|   ..+++|+.|++++|+++ .+|.   .+++|+.|+|++|.|+ .+|..+.++++|+.|+|
T Consensus       221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L  291 (622)
T 3g06_A          221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL  291 (622)
T ss_dssp             TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred             CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence            445555555555543 33   23345555555555555 2333   3455666666666665 44555566666666666


Q ss_pred             cCCcCcccCChhhhC
Q 041300          437 SNNQFVLELPKELEK  451 (716)
Q Consensus       437 s~N~l~~~~~~~~~~  451 (716)
                      ++|++++..|..+..
T Consensus       292 ~~N~l~~~~~~~l~~  306 (622)
T 3g06_A          292 EGNPLSERTLQALRE  306 (622)
T ss_dssp             CSCCCCHHHHHHHHH
T ss_pred             cCCCCCCcCHHHHHh
Confidence            666666555555443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=3.8e-28  Score=250.88  Aligned_cols=252  Identities=22%  Similarity=0.195  Sum_probs=134.7

Q ss_pred             CCCccCEEEeeCCcCcccCCCccccccccEEEccCCcCcc-ccCcccc-------CCCCccEEEecCCcccccCCccc--
Q 041300          212 NLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTG-YLPHNIC-------RGGLLEAFIVSENHFQGTIPESL--  281 (716)
Q Consensus       212 ~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~-------~~~~L~~L~l~~n~l~~~~p~~l--  281 (716)
                      ..++|+.|++++|.+  .+|..+... ++.|++++|.++. ..+..+.       .++.|+.|++++|++++.+|..+  
T Consensus        41 ~~~~L~~l~l~~n~l--~~p~~~~~~-L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  117 (312)
T 1wwl_A           41 GGRSLEYLLKRVDTE--ADLGQFTDI-IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE  117 (312)
T ss_dssp             EEEECTTHHHHCCTT--CCCHHHHHH-HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred             cCCCceeEeeccccc--ccHHHHHHH-HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence            344777888888888  556544433 7888888888743 3333332       35555555555555555555544  


Q ss_pred             ccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCE
Q 041300          282 RNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQA  361 (716)
Q Consensus       282 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  361 (716)
                      ..+++|+.|++++|++++. |..+..++                   ...+++|++|++++|++++..|..++.+++|++
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~-------------------~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  177 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATR-DAWLAELQ-------------------QWLKPGLKVLSIAQAHSLNFSCEQVRVFPALST  177 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSS-SSHHHHHH-------------------TTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCE
T ss_pred             hcCCCccEEEccCCCCcch-hHHHHHHH-------------------HhhcCCCcEEEeeCCCCccchHHHhccCCCCCE
Confidence            4555555555555555544 33333330                   000144445555555544444444455555555


Q ss_pred             EEccCCccccc--cCccc--CCCCCCcEEEccCCcccc---cCCcccCCCCCCCEEEccCCcCCccCc-hhhcCcCCCCE
Q 041300          362 LDLSLNHIVGE--IPKEL--GKLNSLTKLILRGNQLTG---RLPTEIGSLIELEYLDFSANKFNNSVP-ESLGNLLKLHY  433 (716)
Q Consensus       362 L~L~~n~l~~~--~~~~~--~~l~~L~~L~L~~N~l~~---~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~  433 (716)
                      |++++|++.+.  .+..+  ..+++|++|++++|++++   .....+..+++|++|+|++|.+++..| ..+..+++|++
T Consensus       178 L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~  257 (312)
T 1wwl_A          178 LDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNS  257 (312)
T ss_dssp             EECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCE
T ss_pred             EECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCE
Confidence            55555554432  12222  445555555555555541   111222345556666666666655443 33444556666


Q ss_pred             EECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcc
Q 041300          434 LGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSG  491 (716)
Q Consensus       434 L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~  491 (716)
                      |+|++|+++ .+|..+.  ++|++||+++|++++. |. +..+++|+.|++++|++++
T Consensus       258 L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          258 LNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             EECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             EECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            666666665 4454443  5666666666666654 44 6666677777777776654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=3.8e-28  Score=251.53  Aligned_cols=265  Identities=22%  Similarity=0.210  Sum_probs=217.0

Q ss_pred             cCEEEeeCCcCcccCCCccccc-cccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEccC
Q 041300          216 LKSLGLMDNHLSGSIPPSFGNS-MLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNG  294 (716)
Q Consensus       216 L~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~  294 (716)
                      ++..+++.+.+....+..+... +|++|++++|.+++..+..+..++.|+.|++++|.+++..+  +..+++|++|++++
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~   89 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN   89 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence            4444555555543333333322 68888888888888777788888899999999999887654  88899999999999


Q ss_pred             CcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccC
Q 041300          295 NNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIP  374 (716)
Q Consensus       295 n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  374 (716)
                      |++++..+     .++|++|++++|.+++..+..   +++|++|++++|++++..+..+..+++|++|++++|.+++..+
T Consensus        90 n~l~~l~~-----~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  161 (317)
T 3o53_A           90 NYVQELLV-----GPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF  161 (317)
T ss_dssp             SEEEEEEE-----CTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred             CccccccC-----CCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence            99886542     389999999999999876544   5789999999999998888889999999999999999998777


Q ss_pred             cccC-CCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCC
Q 041300          375 KELG-KLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLV  453 (716)
Q Consensus       375 ~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  453 (716)
                      ..+. .+++|++|++++|++++. + ....+++|++|+|++|.+++. |..+..+++|+.|++++|+++ .+|..+..++
T Consensus       162 ~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~  237 (317)
T 3o53_A          162 AELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ  237 (317)
T ss_dssp             GGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCT
T ss_pred             HHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCC
Confidence            7764 789999999999999865 3 344589999999999999964 455899999999999999998 4678899999


Q ss_pred             CCCEEECCCCcCc-cccchhccCCCCCCEEECcC-CcCcccCC
Q 041300          454 QLSELDASHNLFG-GEIPFQICSLKSLEKLNLSH-NNLSGLIP  494 (716)
Q Consensus       454 ~L~~L~ls~N~l~-~~~p~~~~~l~~L~~L~ls~-N~l~~~~~  494 (716)
                      +|+.|++++|.+. +.+|..+..+++|+.+++++ +.+++..|
T Consensus       238 ~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~  280 (317)
T 3o53_A          238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE  280 (317)
T ss_dssp             TCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred             CCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence            9999999999998 77888999999999999984 45555443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=5.4e-25  Score=245.81  Aligned_cols=262  Identities=24%  Similarity=0.251  Sum_probs=207.4

Q ss_pred             ccCEEEeeCCcCcccCCCccccccccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEccC
Q 041300          215 NLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNG  294 (716)
Q Consensus       215 ~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~  294 (716)
                      +++.|++++|.++ .+|..+. .+|+.|++++|.++... .   .+++|+.|++++|++++ +|.   .+++|+.|++++
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~-~~L~~L~L~~N~l~~lp-~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~  110 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP-AHITTLVIPDNNLTSLP-A---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFS  110 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC-TTCSEEEECSCCCSCCC-C---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECS
T ss_pred             CCcEEEecCCCcC-ccChhhC-CCCcEEEecCCCCCCCC-C---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcC
Confidence            5888999999888 5566554 68999999999988543 3   46789999999999885 444   678899999999


Q ss_pred             CcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccC
Q 041300          295 NNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIP  374 (716)
Q Consensus       295 n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  374 (716)
                      |++++...    .+++|+.|++++|++++. |.   .+++|++|++++|++++. |.   .+++|+.|++++|.+++ +|
T Consensus       111 N~l~~l~~----~l~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~-l~  177 (622)
T 3g06_A          111 NPLTHLPA----LPSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS-LP  177 (622)
T ss_dssp             CCCCCCCC----CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CC
T ss_pred             CcCCCCCC----CCCCcCEEECCCCCCCcC-CC---CCCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCC-Cc
Confidence            99987544    568899999999998864 33   248899999999998853 33   35789999999999985 55


Q ss_pred             cccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCC
Q 041300          375 KELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQ  454 (716)
Q Consensus       375 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  454 (716)
                         ..+++|+.|++++|++++ +|.   .+++|+.|++++|.++. +|.   .+++|+.|++++|++++ +|   ..+++
T Consensus       178 ---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~  242 (622)
T 3g06_A          178 ---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP---VLPSE  242 (622)
T ss_dssp             ---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC---CCCTT
T ss_pred             ---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC---CCCCc
Confidence               456889999999999985 444   34789999999999984 443   24789999999999985 55   45678


Q ss_pred             CCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCcccccCCC
Q 041300          455 LSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPN  519 (716)
Q Consensus       455 L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~~p~  519 (716)
                      |+.|++++|.++. +|.   .+++|+.|++++|+|+ .+|..|..+++|+.|++++|++++.+|.
T Consensus       243 L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~  302 (622)
T 3g06_A          243 LKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  302 (622)
T ss_dssp             CCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred             CcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence            9999999999984 554   5688999999999998 5577889999999999999999876553

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.94  E-value=1.6e-25  Score=227.05  Aligned_cols=212  Identities=26%  Similarity=0.230  Sum_probs=173.5

Q ss_pred             CCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEc
Q 041300          309 PNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLIL  388 (716)
Q Consensus       309 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  388 (716)
                      ++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            46777788877777776667777788888888888887776677788888888888888888777777888888888888


Q ss_pred             cCCcccccCCcccCCCCCCCEEEccCCcCCcc-CchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCC----EEECCCC
Q 041300          389 RGNQLTGRLPTEIGSLIELEYLDFSANKFNNS-VPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLS----ELDASHN  463 (716)
Q Consensus       389 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~----~L~ls~N  463 (716)
                      ++|++++..+..+..+++|++|++++|.+.+. +|..+..+++|++|++++|++++..+..+..+.+|+    .|++++|
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n  187 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence            88888876666788888888888888888764 578888889999999999998877777777776666    8999999


Q ss_pred             cCccccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCcccccCCCcc
Q 041300          464 LFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNST  521 (716)
Q Consensus       464 ~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~~p~~~  521 (716)
                      .+++..+..+. ..+|+.|++++|++++..+..|..+++|+.|++++|++.+..|...
T Consensus       188 ~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~  244 (276)
T 2z62_A          188 PMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID  244 (276)
T ss_dssp             CCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTH
T ss_pred             cccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCchH
Confidence            99866655554 4589999999999998888889999999999999999999877553

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=3.6e-26  Score=250.39  Aligned_cols=237  Identities=20%  Similarity=0.163  Sum_probs=193.9

Q ss_pred             CCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEE
Q 041300          259 RGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTL  338 (716)
Q Consensus       259 ~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  338 (716)
                      ..+.|+.|++++|.+++..|..|..+++|+.|+|++|.+++..+  +..+++|++|+|++|.+++..+     .++|++|
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L  104 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETL  104 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEE
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEE
Confidence            34478999999999998888888999999999999999887665  8888999999999998886543     2789999


Q ss_pred             EcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccC-CCCCCCEEEccCCcC
Q 041300          339 NVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIG-SLIELEYLDFSANKF  417 (716)
Q Consensus       339 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l  417 (716)
                      ++++|.+++..+.   .+++|+.|++++|.+++..|..+..+++|+.|+|++|.+++..|..+. .+++|+.|+|++|.+
T Consensus       105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l  181 (487)
T 3oja_A          105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI  181 (487)
T ss_dssp             ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred             ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence            9999998876554   457889999999999888888888889999999999999887777775 788999999999998


Q ss_pred             CccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCc-ccCCcC
Q 041300          418 NNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLS-GLIPNC  496 (716)
Q Consensus       418 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~-~~~~~~  496 (716)
                      ++..+  +..+++|+.|+|++|.+++. |..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.+. +.+|..
T Consensus       182 ~~~~~--~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~  257 (487)
T 3oja_A          182 YDVKG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDF  257 (487)
T ss_dssp             CEEEC--CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHH
T ss_pred             ccccc--cccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHH
Confidence            86633  34588899999999999864 4458888899999999999985 6777888899999999999887 556666


Q ss_pred             CcCCCCCCEEEcc
Q 041300          497 FEGMHGLSIIDIS  509 (716)
Q Consensus       497 ~~~~~~L~~l~ls  509 (716)
                      +..++.|+.++++
T Consensus       258 ~~~l~~L~~l~~~  270 (487)
T 3oja_A          258 FSKNQRVQTVAKQ  270 (487)
T ss_dssp             HTTCHHHHHHHHH
T ss_pred             HHhCCCCcEEecc
Confidence            7666666666654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.93  E-value=5e-25  Score=222.55  Aligned_cols=217  Identities=21%  Similarity=0.221  Sum_probs=166.0

Q ss_pred             CCcceeeeeeCCCCCEEEEEcCCCCCccccCCCCCCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCC
Q 041300           38 SPCAWYGISCNDAGRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIP  117 (716)
Q Consensus        38 ~~c~w~gv~c~~~~~v~~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  117 (716)
                      +.|.|.|+.|...+.++.++++++++.. ++. .+  .+++++|+|++|.+....+..|.++++|++|+|++|.++...+
T Consensus         3 ~~C~~~~~~C~c~~~~~~l~~~~~~l~~-ip~-~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~   78 (270)
T 2o6q_A            3 ALCKKDGGVCSCNNNKNSVDCSSKKLTA-IPS-NI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA   78 (270)
T ss_dssp             CCBGGGTCSBEEETTTTEEECTTSCCSS-CCS-CC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCT
T ss_pred             ccCCCCCCCCEeCCCCCEEEccCCCCCc-cCC-CC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeCh
Confidence            7899999999866677899999999873 432 22  2679999999999998888889999999999999999997777


Q ss_pred             ccccCCCCCCEEEcccccCccCCCccccCCCCCceeecccccccCCCCccccCCcCCcEEEeecccccccccccccCCCC
Q 041300          118 AEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKF  197 (716)
Q Consensus       118 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  197 (716)
                      ..|..+++|++|+|++|.+.+..+..|..+++|++|+|++|.+++..+..|.++++|++|+|++|.+++..+..+     
T Consensus        79 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-----  153 (270)
T 2o6q_A           79 GIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVF-----  153 (270)
T ss_dssp             TTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT-----
T ss_pred             hhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHc-----
Confidence            778999999999999999998777788999999999999999998888889999999999999998875443333     


Q ss_pred             CceeeCCCCCcccCCCCccCEEEeeCCcCcccCCCccccccccEEEccCCcCccccCccccCCCCccEEEecCCcccccC
Q 041300          198 LFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTI  277 (716)
Q Consensus       198 L~~L~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~  277 (716)
                                   ..+++|++|++++|.+++..+..|                       ..++.|+.|++++|.+++..
T Consensus       154 -------------~~l~~L~~L~L~~n~l~~~~~~~~-----------------------~~l~~L~~L~L~~N~l~~~~  197 (270)
T 2o6q_A          154 -------------DKLTSLKELRLYNNQLKRVPEGAF-----------------------DKLTELKTLKLDNNQLKRVP  197 (270)
T ss_dssp             -------------TTCTTCCEEECCSSCCSCCCTTTT-----------------------TTCTTCCEEECCSSCCSCCC
T ss_pred             -------------cCCcccceeEecCCcCcEeChhHh-----------------------ccCCCcCEEECCCCcCCcCC
Confidence                         344467777777777665444333                       33444555555555555444


Q ss_pred             CcccccCCCCcEEEccCCcCCC
Q 041300          278 PESLRNCTSLIRVRLNGNNLTG  299 (716)
Q Consensus       278 p~~l~~l~~L~~L~l~~n~l~~  299 (716)
                      +..+..+++|+.|++++|.+..
T Consensus       198 ~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          198 EGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             TTTTTTCTTCCEEECCSSCBCC
T ss_pred             HHHhccccCCCEEEecCCCeeC
Confidence            4555666666777777666553

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=8e-25  Score=221.98  Aligned_cols=207  Identities=25%  Similarity=0.221  Sum_probs=175.8

Q ss_pred             CCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEc
Q 041300          285 TSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDL  364 (716)
Q Consensus       285 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  364 (716)
                      ++|+.|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|.++++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            46888888888888877778888888888888888888877778888889999999999888887788888899999999


Q ss_pred             cCCccccccCcccCCCCCCcEEEccCCccccc-CCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCC----EEECcCC
Q 041300          365 SLNHIVGEIPKELGKLNSLTKLILRGNQLTGR-LPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLH----YLGLSNN  439 (716)
Q Consensus       365 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~----~L~Ls~N  439 (716)
                      ++|.+.+..+..+..+++|++|++++|++++. +|..+..+++|++|++++|.+++..+..+..+.+|+    .|++++|
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n  187 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence            99998877666788889999999999998864 578888999999999999999887777787777777    8999999


Q ss_pred             cCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCccc
Q 041300          440 QFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGL  492 (716)
Q Consensus       440 ~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~  492 (716)
                      ++.+..+..+. ..+|++|++++|.+++..+..+..+++|+.|++++|++++.
T Consensus       188 ~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  239 (276)
T 2z62_A          188 PMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  239 (276)
T ss_dssp             CCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred             cccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence            99876665554 44899999999999977777788999999999999999864

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=3.2e-28  Score=275.51  Aligned_cols=427  Identities=17%  Similarity=0.170  Sum_probs=223.0

Q ss_pred             CCcceeeeeeCCCCCEEEEEcCCCCCccccCCCCCCCCCCCcEEECCCCCccc---cCcc------------cccCCCCC
Q 041300           38 SPCAWYGISCNDAGRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFG---TIPS------------QIGNLTKL  102 (716)
Q Consensus        38 ~~c~w~gv~c~~~~~v~~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~---~~~~------------~~~~l~~L  102 (716)
                      .|+.|.++..   .....+++.+....  .+...+..+++|++|+++++....   ..|.            .+..+++|
T Consensus        33 vck~W~~~~~---~~~~~l~~~~~~~~--~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L  107 (594)
T 2p1m_B           33 VCKSWYEIER---WCRRKVFIGNCYAV--SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWL  107 (594)
T ss_dssp             SCHHHHHHHH---HHCCEEEESSTTSS--CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTC
T ss_pred             HHHHHHHhhh---hhceEEeecccccc--CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCC
Confidence            4668998832   12345566544321  112345677889999999876321   1121            13457788


Q ss_pred             CEEECcCCcCcccCCcccc-CCCCCCEEEcccc-cCccC-CCccccCCCCCceeecccccccCCCCcccc----CCcCCc
Q 041300          103 SYISLDSNQLSGKIPAEVG-LLTHLKVLSFQFN-ELDGS-IPPEVCQLSSIEELFLYSNHLNGSLPPFLG----NLSNIV  175 (716)
Q Consensus       103 ~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~----~l~~L~  175 (716)
                      ++|+|++|.+++..+..+. .+++|++|+|++| .++.. ++..+..+++|++|+|++|.+++..+..+.    .+++|+
T Consensus       108 ~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~  187 (594)
T 2p1m_B          108 EEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLV  187 (594)
T ss_dssp             CEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCC
T ss_pred             CeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCc
Confidence            8888888888766666664 6788888888887 44432 333345778888888888887765544443    556788


Q ss_pred             EEEeeccc--ccccccccccCCCCCceeeCCCCCcccCCCCccCEEEeeCCcCcccCCCcccc-ccccEEEccCC-----
Q 041300          176 RLYINNNS--LSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGN-SMLTWLTLSGN-----  247 (716)
Q Consensus       176 ~L~L~~n~--l~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~L~~n-----  247 (716)
                      +|++++|.  ++......+                 ...+++|++|++++|...+.++..+.. .+|+.|+++.+     
T Consensus       188 ~L~l~~~~~~~~~~~l~~l-----------------~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~  250 (594)
T 2p1m_B          188 SLNISCLASEVSFSALERL-----------------VTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVR  250 (594)
T ss_dssp             EEECTTCCSCCCHHHHHHH-----------------HHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCC
T ss_pred             EEEecccCCcCCHHHHHHH-----------------HHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccc
Confidence            88887775  221111111                 112345555665555211112222222 24555554332     


Q ss_pred             --cCccccCccccCCCCccEEE-ecCCcccccCCcccccCCCCcEEEccCCcCCCccc-hhhCCCCCCCEEEccCCcccc
Q 041300          248 --HFTGYLPHNICRGGLLEAFI-VSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNIS-EALGLYPNLTFIDLSRNNFYG  323 (716)
Q Consensus       248 --~l~~~~~~~~~~~~~L~~L~-l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~Ls~n~l~~  323 (716)
                        .+.+. +..+..++.|+.+. +.... ...++..+..+++|+.|++++|.++.... ..+..+++|++|++++| +..
T Consensus       251 ~~~~~~l-~~~l~~~~~L~~Ls~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~  327 (594)
T 2p1m_B          251 PDVYSGL-SVALSGCKELRCLSGFWDAV-PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IED  327 (594)
T ss_dssp             HHHHHHH-HHHHHTCTTCCEEECCBTCC-GGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHH
T ss_pred             hhhHHHH-HHHHhcCCCcccccCCcccc-hhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCH
Confidence              23322 22445556666662 22221 12333444456677777777766553322 22445667777777666 332


Q ss_pred             c-cCCCCCCCCCCCEEEccc---------CcCcccCccccc-CCCCCCEEEccCCccccccCcccC-CCCCCcEEEcc--
Q 041300          324 E-ISSNWGKCPKLGTLNVSM---------NNITGGIPREIG-NMSQLQALDLSLNHIVGEIPKELG-KLNSLTKLILR--  389 (716)
Q Consensus       324 ~-~~~~~~~l~~L~~L~L~~---------n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~--  389 (716)
                      . ++.....+++|+.|+++.         +.+++.....+. ++++|+.|++..|.+++..+..+. .+++|+.|+++  
T Consensus       328 ~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~  407 (594)
T 2p1m_B          328 AGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCII  407 (594)
T ss_dssp             HHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEES
T ss_pred             HHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecc
Confidence            1 111122356666666632         334332222222 356666666666666554443333 35666666666  


Q ss_pred             C----Cccccc-----CCcccCCCCCCCEEEccCCcCCccCchhhcC-cCCCCEEECcCCcCcccCChhh-hCCCCCCEE
Q 041300          390 G----NQLTGR-----LPTEIGSLIELEYLDFSANKFNNSVPESLGN-LLKLHYLGLSNNQFVLELPKEL-EKLVQLSEL  458 (716)
Q Consensus       390 ~----N~l~~~-----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L  458 (716)
                      +    |.+++.     ++..+..+++|+.|+|++ .+++..+..+.. +++|+.|++++|.+++..+..+ ..+++|++|
T Consensus       408 ~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L  486 (594)
T 2p1m_B          408 EPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKL  486 (594)
T ss_dssp             STTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEE
T ss_pred             cCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEE
Confidence            2    334311     111134455666666655 444433333333 5566666666666544333333 445566666


Q ss_pred             ECCCCcCccccch-hccCCCCCCEEECcCCcCc
Q 041300          459 DASHNLFGGEIPF-QICSLKSLEKLNLSHNNLS  490 (716)
Q Consensus       459 ~ls~N~l~~~~p~-~~~~l~~L~~L~ls~N~l~  490 (716)
                      ++++|.+++..+. ....+++|+.|++++|+++
T Consensus       487 ~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          487 EIRDCPFGDKALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             EEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred             ECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence            6666665433332 2233556666666666553

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.93  E-value=2.6e-24  Score=217.27  Aligned_cols=205  Identities=21%  Similarity=0.272  Sum_probs=139.1

Q ss_pred             CCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccC
Q 041300          311 LTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRG  390 (716)
Q Consensus       311 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  390 (716)
                      .+.++++++.++. +|..+.  ++++.|++++|++++..+..|..+++|++|++++|.++...+..|..+++|++|++++
T Consensus        18 ~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~   94 (270)
T 2o6q_A           18 KNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD   94 (270)
T ss_dssp             TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred             CCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence            4445555555543 222221  3455666666665555555566666666666666666644444456666666666666


Q ss_pred             CcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccc
Q 041300          391 NQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIP  470 (716)
Q Consensus       391 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p  470 (716)
                      |++++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|.+++..+
T Consensus        95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  174 (270)
T 2o6q_A           95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE  174 (270)
T ss_dssp             SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence            66665555556667777777777777776666667777777777777777776555567777788888888888877666


Q ss_pred             hhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCcccccCC
Q 041300          471 FQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVP  518 (716)
Q Consensus       471 ~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~~p  518 (716)
                      ..|..+++|+.|++++|++++..+..|..+++|+.|++++|++.+..+
T Consensus       175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred             hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence            677788888888888888887777778888888888888888877654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=8.5e-28  Score=272.06  Aligned_cols=417  Identities=14%  Similarity=0.089  Sum_probs=289.6

Q ss_pred             cEEECCCCCccccCcccccCCCCCCEEECcCCcCcc---cCC------------ccccCCCCCCEEEcccccCccCCCcc
Q 041300           79 VHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSG---KIP------------AEVGLLTHLKVLSFQFNELDGSIPPE  143 (716)
Q Consensus        79 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~---~~p------------~~~~~l~~L~~L~L~~N~l~~~~~~~  143 (716)
                      +.++++..... .....+..+++|++|+|+++....   ..|            ..+..+++|++|+|++|.+++..+..
T Consensus        46 ~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~  124 (594)
T 2p1m_B           46 RKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL  124 (594)
T ss_dssp             CEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH
T ss_pred             eEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHH
Confidence            35566544322 222446778999999999976321   112            12346789999999999988766666


Q ss_pred             cc-CCCCCceeecccc-cccCC-CCccccCCcCCcEEEeecccccccccccccCCCCCceeeCCCCCcccCCCCccCEEE
Q 041300          144 VC-QLSSIEELFLYSN-HLNGS-LPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLG  220 (716)
Q Consensus       144 ~~-~l~~L~~L~L~~N-~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~L~~L~  220 (716)
                      +. .+++|++|+|++| .++.. ++..+.++++|++|++++|.+++..+..+..+              ...+++|++|+
T Consensus       125 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~--------------~~~~~~L~~L~  190 (594)
T 2p1m_B          125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHF--------------PDTYTSLVSLN  190 (594)
T ss_dssp             HHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGS--------------CTTCCCCCEEE
T ss_pred             HHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHH--------------hhcCCcCcEEE
Confidence            65 6899999999998 55432 34445578999999999998876554444322              23566889999


Q ss_pred             eeCCc--Cccc-CCCcc-ccccccEEEccCCcCccccCccccCCCCccEEEecCC-------cccccCCcccccCCCCcE
Q 041300          221 LMDNH--LSGS-IPPSF-GNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSEN-------HFQGTIPESLRNCTSLIR  289 (716)
Q Consensus       221 l~~n~--l~~~-~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n-------~l~~~~p~~l~~l~~L~~  289 (716)
                      +++|.  +... ++... ..++|+.|++++|...+.++..+..++.|+.|.++.+       .+.+ ++..+.++++|+.
T Consensus       191 l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~  269 (594)
T 2p1m_B          191 ISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRC  269 (594)
T ss_dssp             CTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCE
T ss_pred             ecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCccc
Confidence            98886  2111 11111 1257999999999433336677778889999996544       3443 3346788999999


Q ss_pred             E-EccCCcCCCccchhhCCCCCCCEEEccCCccccccC-CCCCCCCCCCEEEcccCcCccc-CcccccCCCCCCEEEcc-
Q 041300          290 V-RLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEIS-SNWGKCPKLGTLNVSMNNITGG-IPREIGNMSQLQALDLS-  365 (716)
Q Consensus       290 L-~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~-  365 (716)
                      | .+.+... ...+..+..+++|++|++++|.+++... ..+..+++|+.|++++| ++.. ++.....+++|+.|++. 
T Consensus       270 Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~  347 (594)
T 2p1m_B          270 LSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFP  347 (594)
T ss_dssp             EECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEEC
T ss_pred             ccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEec
Confidence            8 3433322 2344444567899999999999775432 23567899999999988 4422 23333458999999993 


Q ss_pred             --------CCccccccCcccC-CCCCCcEEEccCCcccccCCcccC-CCCCCCEEEcc--C----CcCCcc-----Cchh
Q 041300          366 --------LNHIVGEIPKELG-KLNSLTKLILRGNQLTGRLPTEIG-SLIELEYLDFS--A----NKFNNS-----VPES  424 (716)
Q Consensus       366 --------~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls--~----N~l~~~-----~~~~  424 (716)
                              .+.+++.....+. .+++|+.|.+..|.+++.....+. .+++|+.|+++  +    |.+++.     ++..
T Consensus       348 ~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l  427 (594)
T 2p1m_B          348 SEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAI  427 (594)
T ss_dssp             SCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHH
T ss_pred             CcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHH
Confidence                    3556543333333 478999999999999876555554 58899999999  4    566532     2223


Q ss_pred             hcCcCCCCEEECcCCcCcccCChhhhC-CCCCCEEECCCCcCccccchhc-cCCCCCCEEECcCCcCcccCCc-CCcCCC
Q 041300          425 LGNLLKLHYLGLSNNQFVLELPKELEK-LVQLSELDASHNLFGGEIPFQI-CSLKSLEKLNLSHNNLSGLIPN-CFEGMH  501 (716)
Q Consensus       425 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~ls~N~l~~~~p~~~-~~l~~L~~L~ls~N~l~~~~~~-~~~~~~  501 (716)
                      +..+++|+.|++++ .++...+..+.. +++|+.|++++|.+++..+..+ ..+++|+.|++++|.++..... ....++
T Consensus       428 ~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~  506 (594)
T 2p1m_B          428 VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE  506 (594)
T ss_dssp             HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGG
T ss_pred             HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCC
Confidence            67789999999987 666555555555 8899999999999987666555 6689999999999999654433 445588


Q ss_pred             CCCEEEccCCccc
Q 041300          502 GLSIIDISDNQLQ  514 (716)
Q Consensus       502 ~L~~l~ls~N~l~  514 (716)
                      +|+.|++++|+++
T Consensus       507 ~L~~L~l~~~~~~  519 (594)
T 2p1m_B          507 TMRSLWMSSCSVS  519 (594)
T ss_dssp             GSSEEEEESSCCB
T ss_pred             CCCEEeeeCCCCC
Confidence            9999999999884

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.92  E-value=9.2e-24  Score=215.08  Aligned_cols=203  Identities=23%  Similarity=0.184  Sum_probs=133.2

Q ss_pred             CCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEE
Q 041300          307 LYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKL  386 (716)
Q Consensus       307 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  386 (716)
                      .+++++++++++|.++.. |..+  .++++.|++++|.+++..+..|..+++|++|++++|.+++..+.  ..+++|+.|
T Consensus         8 ~l~~l~~l~~~~~~l~~i-p~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L   82 (290)
T 1p9a_G            8 KVASHLEVNCDKRNLTAL-PPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTL   82 (290)
T ss_dssp             CSTTCCEEECTTSCCSSC-CSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEE
T ss_pred             ccCCccEEECCCCCCCcC-CCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEE
Confidence            344455555555555432 2222  14555666666666655555666666666666666666543322  556667777


Q ss_pred             EccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCc
Q 041300          387 ILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFG  466 (716)
Q Consensus       387 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~  466 (716)
                      ++++|+++ .+|..+..+++|++|++++|++++..+..|.++++|++|+|++|++++..+..|..+++|+.|++++|+++
T Consensus        83 ~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  161 (290)
T 1p9a_G           83 DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT  161 (290)
T ss_dssp             ECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             ECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence            77777766 45666667777777777777777666666777777777777777777666666777777777777777777


Q ss_pred             cccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCccccc
Q 041300          467 GEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGP  516 (716)
Q Consensus       467 ~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~  516 (716)
                      +..+..+..+++|+.|++++|+|+. +|..+..+.+|+.+++++|++.+.
T Consensus       162 ~l~~~~~~~l~~L~~L~L~~N~l~~-ip~~~~~~~~L~~l~L~~Np~~C~  210 (290)
T 1p9a_G          162 ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPWLCN  210 (290)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             ccCHHHhcCcCCCCEEECCCCcCCc-cChhhcccccCCeEEeCCCCccCc
Confidence            6666666777888888888888874 455555667788888888887654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.91  E-value=1.8e-23  Score=212.92  Aligned_cols=204  Identities=25%  Similarity=0.202  Sum_probs=156.8

Q ss_pred             cccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCC
Q 041300          281 LRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQ  360 (716)
Q Consensus       281 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  360 (716)
                      +.++++++.+++++|.++..++..   .++++.|++++|.+++..+..|..+++|+.|++++|.+++..+.  ..+++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~   80 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG   80 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred             ccccCCccEEECCCCCCCcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence            456667777777777777544332   25677778888777777777777778888888888877754332  6778888


Q ss_pred             EEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCc
Q 041300          361 ALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQ  440 (716)
Q Consensus       361 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~  440 (716)
                      +|++++|+++ .+|..+..+++|+.|++++|++++..+..|..+++|++|+|++|.+++..+..|..+++|+.|+|++|+
T Consensus        81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  159 (290)
T 1p9a_G           81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN  159 (290)
T ss_dssp             EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence            8888888887 567777788888888888888887666778888888888888888887777777888888888888888


Q ss_pred             CcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcc
Q 041300          441 FVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSG  491 (716)
Q Consensus       441 l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~  491 (716)
                      ++...+..|..+++|+.|++++|+++ .+|..+..+++|+.+++++|.+..
T Consensus       160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence            88666666778888888888888888 567777777888888888888763

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.91  E-value=5.5e-24  Score=215.07  Aligned_cols=202  Identities=22%  Similarity=0.209  Sum_probs=125.4

Q ss_pred             CCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEE
Q 041300          308 YPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLI  387 (716)
Q Consensus       308 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  387 (716)
                      +++|+.|++++|.+...  ..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus        40 l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  115 (272)
T 3rfs_A           40 LNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV  115 (272)
T ss_dssp             HTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             ccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence            44455555555554422  2344555555555555555542  2455666666666666666655555556666666666


Q ss_pred             ccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCcc
Q 041300          388 LRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGG  467 (716)
Q Consensus       388 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~  467 (716)
                      +++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|++|++++|.+++
T Consensus       116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  195 (272)
T 3rfs_A          116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS  195 (272)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc
Confidence            66666665555556666666666666666665555556666667777777776665555556666777777777777776


Q ss_pred             ccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCcccccCCCc
Q 041300          468 EIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNS  520 (716)
Q Consensus       468 ~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~~p~~  520 (716)
                      ..|..+..+++|+.|++++|.+.+.       +++++.++++.|.++|.+|..
T Consensus       196 ~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          196 VPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNS  241 (272)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCT
T ss_pred             cCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCc
Confidence            6666666777777777777766543       345667777777777776653

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.90  E-value=4.4e-25  Score=232.98  Aligned_cols=251  Identities=20%  Similarity=0.241  Sum_probs=174.8

Q ss_pred             EEecCCcccccCCcccccCCCCcEEEccCCcCCCccc----hhhCCCC-CCCEEEccCCccccccCCCCCCC-----CCC
Q 041300          266 FIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNIS----EALGLYP-NLTFIDLSRNNFYGEISSNWGKC-----PKL  335 (716)
Q Consensus       266 L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~----~~~~~~~-~L~~L~Ls~n~l~~~~~~~~~~l-----~~L  335 (716)
                      +.++.|.+++.+|..+...++|+.|++++|.++...+    ..+..++ +|++|+|++|.+++..+..+..+     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            3455555665666555555667777777777776655    5666666 77777777777776655555443     778


Q ss_pred             CEEEcccCcCcccCcccc----cCC-CCCCEEEccCCccccccCccc----CC-CCCCcEEEccCCcccccCC----ccc
Q 041300          336 GTLNVSMNNITGGIPREI----GNM-SQLQALDLSLNHIVGEIPKEL----GK-LNSLTKLILRGNQLTGRLP----TEI  401 (716)
Q Consensus       336 ~~L~L~~n~l~~~~~~~~----~~l-~~L~~L~L~~n~l~~~~~~~~----~~-l~~L~~L~L~~N~l~~~~~----~~~  401 (716)
                      ++|+|++|++++..+..+    ..+ ++|++|++++|.+++..+..+    .. .++|++|+|++|++++..+    ..+
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l  162 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL  162 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence            888888888776665543    333 788888888888876554443    33 2578888888888874332    333


Q ss_pred             CCCC-CCCEEEccCCcCCccCchhhc----Cc-CCCCEEECcCCcCccc----CChhhhCC-CCCCEEECCCCcCccccc
Q 041300          402 GSLI-ELEYLDFSANKFNNSVPESLG----NL-LKLHYLGLSNNQFVLE----LPKELEKL-VQLSELDASHNLFGGEIP  470 (716)
Q Consensus       402 ~~l~-~L~~L~Ls~N~l~~~~~~~~~----~l-~~L~~L~Ls~N~l~~~----~~~~~~~l-~~L~~L~ls~N~l~~~~p  470 (716)
                      ..++ +|++|+|++|.+++..+..+.    .+ ++|++|+|++|.+...    ++..+... ++|++||+++|.+++..+
T Consensus       163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  242 (362)
T 3goz_A          163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL  242 (362)
T ss_dssp             HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred             hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence            4554 888888888888876665444    34 5899999999988753    44455553 489999999999887554


Q ss_pred             ----hhccCCCCCCEEECcCCcCcccC-------CcCCcCCCCCCEEEccCCccccc
Q 041300          471 ----FQICSLKSLEKLNLSHNNLSGLI-------PNCFEGMHGLSIIDISDNQLQGP  516 (716)
Q Consensus       471 ----~~~~~l~~L~~L~ls~N~l~~~~-------~~~~~~~~~L~~l~ls~N~l~~~  516 (716)
                          ..+..+++|+.|++++|.+....       +..+..+++|+.||+++|++.+.
T Consensus       243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence                34567788999999999854332       34677888899999999998764

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=3.2e-23  Score=209.41  Aligned_cols=209  Identities=21%  Similarity=0.212  Sum_probs=156.5

Q ss_pred             ccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCE
Q 041300          282 RNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQA  361 (716)
Q Consensus       282 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  361 (716)
                      ..+++|+.|++++|.++..  ..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++..+..+..+++|++
T Consensus        38 ~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  113 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE  113 (272)
T ss_dssp             HHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             ccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence            3556666677776666532  2356667777777777777653  35667777777777777777766666777778888


Q ss_pred             EEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcC
Q 041300          362 LDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQF  441 (716)
Q Consensus       362 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  441 (716)
                      |++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++
T Consensus       114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  193 (272)
T 3rfs_A          114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL  193 (272)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence            88888887766666677788888888888888766666677788888888888888877777778888888888888888


Q ss_pred             cccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCCcCCC
Q 041300          442 VLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMH  501 (716)
Q Consensus       442 ~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~  501 (716)
                      ++..+..+..+++|+.|++++|.+.+       .+++|+.|+++.|+++|.+|..+..+.
T Consensus       194 ~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          194 KSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA  246 (272)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred             CccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccccC
Confidence            87777777888888888888887763       356788888888999888888776554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.90  E-value=1.4e-23  Score=216.54  Aligned_cols=224  Identities=16%  Similarity=0.163  Sum_probs=176.8

Q ss_pred             CCcEEEccCCcCCCccch---hhCCCCCCCEEEccCCccccccCCCC--CCCCCCCEEEcccCcCcccCc----ccccCC
Q 041300          286 SLIRVRLNGNNLTGNISE---ALGLYPNLTFIDLSRNNFYGEISSNW--GKCPKLGTLNVSMNNITGGIP----REIGNM  356 (716)
Q Consensus       286 ~L~~L~l~~n~l~~~~~~---~~~~~~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~----~~~~~l  356 (716)
                      .++.+.+.++.++.....   .+..+++|++|++++|.+.+..|..+  ..+++|++|++++|.+++..+    ..+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            466777777666532111   11224668999999999888888777  888899999999999887544    344578


Q ss_pred             CCCCEEEccCCccccccCcccCCCCCCcEEEccCCccccc--C--CcccCCCCCCCEEEccCCcCCccCch----hhcCc
Q 041300          357 SQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGR--L--PTEIGSLIELEYLDFSANKFNNSVPE----SLGNL  428 (716)
Q Consensus       357 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~--~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l  428 (716)
                      ++|++|++++|++.+..+..+..+++|++|+|++|++.+.  +  +..+..+++|++|+|++|.++. ++.    .+..+
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l  223 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAG  223 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHT
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcC
Confidence            8999999999999888888899999999999999987642  2  2334688899999999999973 332    35778


Q ss_pred             CCCCEEECcCCcCcccCChhhhCC---CCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCE
Q 041300          429 LKLHYLGLSNNQFVLELPKELEKL---VQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSI  505 (716)
Q Consensus       429 ~~L~~L~Ls~N~l~~~~~~~~~~l---~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~  505 (716)
                      ++|++|+|++|++++..|..+..+   ++|++|++++|+++ .+|..+.  ++|+.|++++|+|++. |. +..+++|+.
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~  298 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDN  298 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSC
T ss_pred             CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccE
Confidence            999999999999998778777776   69999999999999 5676664  7999999999999975 33 678899999


Q ss_pred             EEccCCcccc
Q 041300          506 IDISDNQLQG  515 (716)
Q Consensus       506 l~ls~N~l~~  515 (716)
                      |++++|+++.
T Consensus       299 L~L~~N~l~~  308 (310)
T 4glp_A          299 LTLDGNPFLV  308 (310)
T ss_dssp             EECSSTTTSC
T ss_pred             EECcCCCCCC
Confidence            9999999874

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.89  E-value=6.7e-23  Score=202.95  Aligned_cols=196  Identities=15%  Similarity=0.165  Sum_probs=116.2

Q ss_pred             CCCEEEccCCccccccCCCCCCCCCCCEEEcccCc-CcccCcccccCCCCCCEEEccC-CccccccCcccCCCCCCcEEE
Q 041300          310 NLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNN-ITGGIPREIGNMSQLQALDLSL-NHIVGEIPKELGKLNSLTKLI  387 (716)
Q Consensus       310 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~  387 (716)
                      ++++|++++|++++..+..|..+++|++|++++|+ ++...+..|.++++|++|++++ |++++..+..|..+++|+.|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            45555555555555555455555555555555554 5544444555566666666665 566544445555666666666


Q ss_pred             ccCCcccccCCcccCCCCCCC---EEEccCC-cCCccCchhhcCcCCCC-EEECcCCcCcccCChhhhCCCCCCEEECCC
Q 041300          388 LRGNQLTGRLPTEIGSLIELE---YLDFSAN-KFNNSVPESLGNLLKLH-YLGLSNNQFVLELPKELEKLVQLSELDASH  462 (716)
Q Consensus       388 L~~N~l~~~~~~~~~~l~~L~---~L~Ls~N-~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~  462 (716)
                      +++|++++ +|. +..+++|+   +|++++| .+++..+..|.++++|+ .|++++|+++...+..+.. ++|++|++++
T Consensus       112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~  188 (239)
T 2xwt_C          112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK  188 (239)
T ss_dssp             EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred             CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence            66666653 343 55555555   6666666 66655555566666666 6666666666333333433 5667777777


Q ss_pred             Cc-CccccchhccCC-CCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCC
Q 041300          463 NL-FGGEIPFQICSL-KSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDN  511 (716)
Q Consensus       463 N~-l~~~~p~~~~~l-~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N  511 (716)
                      |+ +++..+..|..+ ++|+.|++++|++++..+.   .+++|+.|+++++
T Consensus       189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~  236 (239)
T 2xwt_C          189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT  236 (239)
T ss_dssp             CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred             CCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence            73 665555666666 6777777777777654433   4556667776654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.89  E-value=1.1e-22  Score=201.53  Aligned_cols=196  Identities=19%  Similarity=0.155  Sum_probs=150.9

Q ss_pred             CCcEEEccCCcCCCccchhhCCCCCCCEEEccCCc-cccccCCCCCCCCCCCEEEccc-CcCcccCcccccCCCCCCEEE
Q 041300          286 SLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNN-FYGEISSNWGKCPKLGTLNVSM-NNITGGIPREIGNMSQLQALD  363 (716)
Q Consensus       286 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~  363 (716)
                      +|+.|++++|++++..+..|..+++|++|++++|. ++...+..|..+++|++|++++ |++++..+..|.++++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            67788888888877777777778888888888886 7766666777888888888887 888777667788888888888


Q ss_pred             ccCCccccccCcccCCCCCCc---EEEccCC-cccccCCcccCCCCCCC-EEEccCCcCCccCchhhcCcCCCCEEECcC
Q 041300          364 LSLNHIVGEIPKELGKLNSLT---KLILRGN-QLTGRLPTEIGSLIELE-YLDFSANKFNNSVPESLGNLLKLHYLGLSN  438 (716)
Q Consensus       364 L~~n~l~~~~~~~~~~l~~L~---~L~L~~N-~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  438 (716)
                      +++|++++ +|. +..+++|+   .|++++| ++++..+..|.++++|+ .|++++|.++...+..|.. ++|+.|++++
T Consensus       112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~  188 (239)
T 2xwt_C          112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK  188 (239)
T ss_dssp             EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred             CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence            88888875 555 77777777   8888888 88766666788888888 8888888887444444554 7888888888


Q ss_pred             Cc-CcccCChhhhCC-CCCCEEECCCCcCccccchhccCCCCCCEEECcCC
Q 041300          439 NQ-FVLELPKELEKL-VQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHN  487 (716)
Q Consensus       439 N~-l~~~~~~~~~~l-~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N  487 (716)
                      |+ ++...+..|..+ ++|+.|++++|++++..+.   .+++|+.|+++++
T Consensus       189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~  236 (239)
T 2xwt_C          189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT  236 (239)
T ss_dssp             CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred             CCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence            85 876667778888 8888888888888754333   5678888888776

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.89  E-value=2.1e-24  Score=230.22  Aligned_cols=240  Identities=22%  Similarity=0.262  Sum_probs=181.6

Q ss_pred             CCcccccCCCCcEEEccCCcCCCccc----hhhCCCCCCCEEEccCCc---cccccCCCC-------CCCCCCCEEEccc
Q 041300          277 IPESLRNCTSLIRVRLNGNNLTGNIS----EALGLYPNLTFIDLSRNN---FYGEISSNW-------GKCPKLGTLNVSM  342 (716)
Q Consensus       277 ~p~~l~~l~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~Ls~n~---l~~~~~~~~-------~~l~~L~~L~L~~  342 (716)
                      ++..+..+++|+.|++++|.++...+    ..+..+++|++|+|++|.   +.+.+|..+       ..+++|++|+|++
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~  103 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  103 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence            44556677778888888887776533    335677888888888753   333334333       5778888888888


Q ss_pred             CcCcc----cCcccccCCCCCCEEEccCCccccccCcccC----CC---------CCCcEEEccCCccc-ccCC---ccc
Q 041300          343 NNITG----GIPREIGNMSQLQALDLSLNHIVGEIPKELG----KL---------NSLTKLILRGNQLT-GRLP---TEI  401 (716)
Q Consensus       343 n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~l---------~~L~~L~L~~N~l~-~~~~---~~~  401 (716)
                      |.+++    .+|..+..+++|++|+|++|.+++..+..+.    .+         ++|++|++++|+++ +.++   ..+
T Consensus       104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l  183 (386)
T 2ca6_A          104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF  183 (386)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence            88886    4666778888999999999988754443333    33         78999999999887 3333   356


Q ss_pred             CCCCCCCEEEccCCcCCc-----cCchhhcCcCCCCEEECcCCcCc----ccCChhhhCCCCCCEEECCCCcCccc----
Q 041300          402 GSLIELEYLDFSANKFNN-----SVPESLGNLLKLHYLGLSNNQFV----LELPKELEKLVQLSELDASHNLFGGE----  468 (716)
Q Consensus       402 ~~l~~L~~L~Ls~N~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~ls~N~l~~~----  468 (716)
                      ..+++|+.|+|++|.++.     ..+..+..+++|+.|+|++|.++    ..+|..+..+++|+.|+|++|.+++.    
T Consensus       184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~  263 (386)
T 2ca6_A          184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA  263 (386)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred             HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence            678899999999998873     33447788899999999999986    56778888899999999999999866    


Q ss_pred             cchhc--cCCCCCCEEECcCCcCcc----cCCcCC-cCCCCCCEEEccCCccccc
Q 041300          469 IPFQI--CSLKSLEKLNLSHNNLSG----LIPNCF-EGMHGLSIIDISDNQLQGP  516 (716)
Q Consensus       469 ~p~~~--~~l~~L~~L~ls~N~l~~----~~~~~~-~~~~~L~~l~ls~N~l~~~  516 (716)
                      ++..+  +.+++|+.|++++|+++.    .+|..+ ..+++|+.|++++|++++.
T Consensus       264 l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~  318 (386)
T 2ca6_A          264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  318 (386)
T ss_dssp             HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence            45566  348999999999999987    466666 5689999999999998754

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.89  E-value=3.2e-22  Score=199.58  Aligned_cols=180  Identities=23%  Similarity=0.240  Sum_probs=120.9

Q ss_pred             CCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccC
Q 041300          335 LGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSA  414 (716)
Q Consensus       335 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~  414 (716)
                      .+.++++++.++ .+|..+.  ++++.|++++|.+++..+..|..+++|++|+|++|++++..+..+..+++|++|+|++
T Consensus        16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   92 (251)
T 3m19_A           16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN   92 (251)
T ss_dssp             GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence            445555555555 2333332  4566666666666655555666666666666666666665555566666677777777


Q ss_pred             CcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCC
Q 041300          415 NKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIP  494 (716)
Q Consensus       415 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~  494 (716)
                      |.+++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|++++..+..+..+++|+.|++++|++++..+
T Consensus        93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  172 (251)
T 3m19_A           93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH  172 (251)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence            77666656666667777777777777765555556677777777777777776666667777778888888888777777


Q ss_pred             cCCcCCCCCCEEEccCCcccccC
Q 041300          495 NCFEGMHGLSIIDISDNQLQGPV  517 (716)
Q Consensus       495 ~~~~~~~~L~~l~ls~N~l~~~~  517 (716)
                      ..|..+++|+.|++++|++.+..
T Consensus       173 ~~~~~l~~L~~L~l~~N~~~c~~  195 (251)
T 3m19_A          173 GAFDRLGKLQTITLFGNQFDCSR  195 (251)
T ss_dssp             TTTTTCTTCCEEECCSCCBCTTS
T ss_pred             HHHhCCCCCCEEEeeCCceeCCc
Confidence            77777788888888888877653

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.89  E-value=4.4e-24  Score=225.37  Aligned_cols=251  Identities=17%  Similarity=0.144  Sum_probs=145.1

Q ss_pred             EEccCCcCccccCccccCCCCccEEEecCCcccccCC----cccccCC-CCcEEEccCCcCCCccchhhCCC-----CCC
Q 041300          242 LTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIP----ESLRNCT-SLIRVRLNGNNLTGNISEALGLY-----PNL  311 (716)
Q Consensus       242 L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p----~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~~-----~~L  311 (716)
                      ++++.|.+++.+|..+.....|+.|++++|.+++..+    ..+..++ +|++|++++|.+++..+..+..+     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            3444444444444444444445555555555554444    4455555 66666666666665555444432     666


Q ss_pred             CEEEccCCccccccCCCC----CCC-CCCCEEEcccCcCcccCccccc----C-CCCCCEEEccCCccccccC----ccc
Q 041300          312 TFIDLSRNNFYGEISSNW----GKC-PKLGTLNVSMNNITGGIPREIG----N-MSQLQALDLSLNHIVGEIP----KEL  377 (716)
Q Consensus       312 ~~L~Ls~n~l~~~~~~~~----~~l-~~L~~L~L~~n~l~~~~~~~~~----~-l~~L~~L~L~~n~l~~~~~----~~~  377 (716)
                      ++|+|++|.+++..+..+    ..+ ++|++|++++|++++..+..+.    . .++|++|++++|.+++..+    ..+
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l  162 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL  162 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence            666666666665444322    223 5677777777776655444332    2 2467777777777764332    233


Q ss_pred             CCCC-CCcEEEccCCcccccCCccc----CCC-CCCCEEEccCCcCCcc----CchhhcC-cCCCCEEECcCCcCcccCC
Q 041300          378 GKLN-SLTKLILRGNQLTGRLPTEI----GSL-IELEYLDFSANKFNNS----VPESLGN-LLKLHYLGLSNNQFVLELP  446 (716)
Q Consensus       378 ~~l~-~L~~L~L~~N~l~~~~~~~~----~~l-~~L~~L~Ls~N~l~~~----~~~~~~~-l~~L~~L~Ls~N~l~~~~~  446 (716)
                      ..++ +|++|+|++|++++..+..+    ..+ ++|++|+|++|.+++.    ++..+.. .++|++|+|++|+++...+
T Consensus       163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  242 (362)
T 3goz_A          163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL  242 (362)
T ss_dssp             HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred             hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence            4444 67777777777765544333    233 4777777777777653    3334444 3477777777777765433


Q ss_pred             ----hhhhCCCCCCEEECCCCcCcccc-------chhccCCCCCCEEECcCCcCccc
Q 041300          447 ----KELEKLVQLSELDASHNLFGGEI-------PFQICSLKSLEKLNLSHNNLSGL  492 (716)
Q Consensus       447 ----~~~~~l~~L~~L~ls~N~l~~~~-------p~~~~~l~~L~~L~ls~N~l~~~  492 (716)
                          ..+..+++|++|++++|.+.+..       +..+..+++|+.||+++|++...
T Consensus       243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence                22355677777777777744332       33556677788888888887654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.88  E-value=1.2e-23  Score=219.92  Aligned_cols=231  Identities=16%  Similarity=0.168  Sum_probs=150.7

Q ss_pred             CCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccc-cCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEE
Q 041300          285 TSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGE-ISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALD  363 (716)
Q Consensus       285 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  363 (716)
                      ++++.|++++|.+.+..+.. ..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..++.+++|++|+
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~  148 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN  148 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSC-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred             ccceEEEcCCccccccchhh-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence            56666666666666554443 3456677777777766544 555566667777777777776666666666777777777


Q ss_pred             ccCC-ccccc-cCcccCCCCCCcEEEccCC-ccccc-CCcccCCCC-CCCEEEccCC--cCC-ccCchhhcCcCCCCEEE
Q 041300          364 LSLN-HIVGE-IPKELGKLNSLTKLILRGN-QLTGR-LPTEIGSLI-ELEYLDFSAN--KFN-NSVPESLGNLLKLHYLG  435 (716)
Q Consensus       364 L~~n-~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~-~L~~L~Ls~N--~l~-~~~~~~~~~l~~L~~L~  435 (716)
                      +++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|++++|  .++ +.++..+..+++|+.|+
T Consensus       149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~  228 (336)
T 2ast_B          149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD  228 (336)
T ss_dssp             CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred             CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence            7777 55542 4555666777777777777 66643 455566677 7777777777  444 34556666777888888


Q ss_pred             CcCCc-CcccCChhhhCCCCCCEEECCCCc-CccccchhccCCCCCCEEECcCCcCcccCCcCCcCC-CCCCEEEccCCc
Q 041300          436 LSNNQ-FVLELPKELEKLVQLSELDASHNL-FGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGM-HGLSIIDISDNQ  512 (716)
Q Consensus       436 Ls~N~-l~~~~~~~~~~l~~L~~L~ls~N~-l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~-~~L~~l~ls~N~  512 (716)
                      +++|. ++...+..+..+++|++|++++|. +.......+..+++|+.|++++| ++   ...+..+ ..+..|++++|+
T Consensus       229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~n~  304 (336)
T 2ast_B          229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHLQINCSH  304 (336)
T ss_dssp             CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTSEESCCC
T ss_pred             CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCcceEEeccc
Confidence            88887 665666677777888888888874 32222235667888888888887 32   2233333 236666788888


Q ss_pred             ccccCCCc
Q 041300          513 LQGPVPNS  520 (716)
Q Consensus       513 l~~~~p~~  520 (716)
                      +++..|..
T Consensus       305 l~~~~~~~  312 (336)
T 2ast_B          305 FTTIARPT  312 (336)
T ss_dssp             SCCTTCSS
T ss_pred             CccccCCc
Confidence            88776643

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.88  E-value=9.8e-24  Score=224.97  Aligned_cols=239  Identities=20%  Similarity=0.204  Sum_probs=178.8

Q ss_pred             ccccCCCCccEEEecCCcccccCC----cccccCCCCcEEEccCCc---CCCccchhh-------CCCCCCCEEEccCCc
Q 041300          255 HNICRGGLLEAFIVSENHFQGTIP----ESLRNCTSLIRVRLNGNN---LTGNISEAL-------GLYPNLTFIDLSRNN  320 (716)
Q Consensus       255 ~~~~~~~~L~~L~l~~n~l~~~~p----~~l~~l~~L~~L~l~~n~---l~~~~~~~~-------~~~~~L~~L~Ls~n~  320 (716)
                      ..+...+.|+.|++++|.+....+    ..+..+++|+.|+|++|.   +++.+|..+       ..+++|++|+|++|.
T Consensus        26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~  105 (386)
T 2ca6_A           26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA  105 (386)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred             HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence            334445566666666666665422    336677788888888753   334444433       677888888888888


Q ss_pred             ccc----ccCCCCCCCCCCCEEEcccCcCcccCccccc----CC---------CCCCEEEccCCccc-cccC---cccCC
Q 041300          321 FYG----EISSNWGKCPKLGTLNVSMNNITGGIPREIG----NM---------SQLQALDLSLNHIV-GEIP---KELGK  379 (716)
Q Consensus       321 l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~l---------~~L~~L~L~~n~l~-~~~~---~~~~~  379 (716)
                      +++    .++..+..+++|++|+|++|.++...+..+.    .+         ++|++|++++|+++ +..+   ..+..
T Consensus       106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~  185 (386)
T 2ca6_A          106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS  185 (386)
T ss_dssp             CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence            876    3556677788889999998888754443333    33         88999999999987 3344   35667


Q ss_pred             CCCCcEEEccCCcccc-----cCCcccCCCCCCCEEEccCCcCC----ccCchhhcCcCCCCEEECcCCcCccc----CC
Q 041300          380 LNSLTKLILRGNQLTG-----RLPTEIGSLIELEYLDFSANKFN----NSVPESLGNLLKLHYLGLSNNQFVLE----LP  446 (716)
Q Consensus       380 l~~L~~L~L~~N~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~----~~  446 (716)
                      +++|+.|++++|+++.     ..+..+..+++|+.|+|++|.++    ..+|..+..+++|+.|+|++|.++..    ++
T Consensus       186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~  265 (386)
T 2ca6_A          186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV  265 (386)
T ss_dssp             CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred             CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH
Confidence            8899999999998872     34447888899999999999986    56777888899999999999998865    45


Q ss_pred             hhhhC--CCCCCEEECCCCcCcc----ccchhc-cCCCCCCEEECcCCcCcccC
Q 041300          447 KELEK--LVQLSELDASHNLFGG----EIPFQI-CSLKSLEKLNLSHNNLSGLI  493 (716)
Q Consensus       447 ~~~~~--l~~L~~L~ls~N~l~~----~~p~~~-~~l~~L~~L~ls~N~l~~~~  493 (716)
                      ..+..  +++|+.|++++|.+++    .+|..+ .++++|+.|++++|++++..
T Consensus       266 ~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            66643  8899999999999987    477776 66899999999999998765

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.88  E-value=1.3e-23  Score=219.73  Aligned_cols=235  Identities=18%  Similarity=0.181  Sum_probs=174.1

Q ss_pred             CCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCc-cchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEE
Q 041300          261 GLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGN-ISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLN  339 (716)
Q Consensus       261 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  339 (716)
                      +.++.+++++|.+.+..+. +..+++|+.|++++|.+++. .+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus        70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~  148 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN  148 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred             ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence            4566666666666655554 44678888888888887765 667778888888888888888877777777888888888


Q ss_pred             cccC-cCccc-CcccccCCCCCCEEEccCC-ccccc-cCcccCCCC-CCcEEEccCC--ccc-ccCCcccCCCCCCCEEE
Q 041300          340 VSMN-NITGG-IPREIGNMSQLQALDLSLN-HIVGE-IPKELGKLN-SLTKLILRGN--QLT-GRLPTEIGSLIELEYLD  411 (716)
Q Consensus       340 L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~-~L~~L~L~~N--~l~-~~~~~~~~~l~~L~~L~  411 (716)
                      +++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|++++|  .++ +.++..+..+++|+.|+
T Consensus       149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~  228 (336)
T 2ast_B          149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD  228 (336)
T ss_dssp             CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred             CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence            8888 57653 5666778888999999988 88754 466677888 8999999988  444 34566677888999999


Q ss_pred             ccCCc-CCccCchhhcCcCCCCEEECcCCc-CcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcC
Q 041300          412 FSANK-FNNSVPESLGNLLKLHYLGLSNNQ-FVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNL  489 (716)
Q Consensus       412 Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l  489 (716)
                      +++|. +++..+..+..+++|+.|++++|. +.......+..+++|+.|++++| +....-..+.  ..++.|++++|++
T Consensus       229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l  305 (336)
T 2ast_B          229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHF  305 (336)
T ss_dssp             CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCS
T ss_pred             CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccC
Confidence            99998 776777788888999999999985 32222235778889999999988 4432222222  2366667899999


Q ss_pred             cccCCcCCcC
Q 041300          490 SGLIPNCFEG  499 (716)
Q Consensus       490 ~~~~~~~~~~  499 (716)
                      ++..|..+..
T Consensus       306 ~~~~~~~~~~  315 (336)
T 2ast_B          306 TTIARPTIGN  315 (336)
T ss_dssp             CCTTCSSCSS
T ss_pred             ccccCCcccc
Confidence            9888876653

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.88  E-value=1.4e-22  Score=209.03  Aligned_cols=154  Identities=25%  Similarity=0.263  Sum_probs=78.4

Q ss_pred             CCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccc--c--CcccCCCCCCcEEEccCCcccccCCc----ccC
Q 041300          331 KCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGE--I--PKELGKLNSLTKLILRGNQLTGRLPT----EIG  402 (716)
Q Consensus       331 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~--~~~~~~l~~L~~L~L~~N~l~~~~~~----~~~  402 (716)
                      .+++|++|++++|++++..+..+..+++|++|++++|++.+.  .  +..+..+++|++|+|++|+++. ++.    .+.
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~  221 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAA  221 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHH
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHh
Confidence            344444444444444444444444455555555555544321  1  1122345555555555555541 111    124


Q ss_pred             CCCCCCEEEccCCcCCccCchhhcCc---CCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCC
Q 041300          403 SLIELEYLDFSANKFNNSVPESLGNL---LKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSL  479 (716)
Q Consensus       403 ~l~~L~~L~Ls~N~l~~~~~~~~~~l---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L  479 (716)
                      .+++|++|+|++|.+.+..|..+..+   ++|++|+|++|+++ .+|..+.  ++|++|++++|++++. |. +..+++|
T Consensus       222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L  296 (310)
T 4glp_A          222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEV  296 (310)
T ss_dssp             HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCC
T ss_pred             cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCc
Confidence            44555555555555555445444444   45666666666665 3444442  4666666666666643 22 4556666


Q ss_pred             CEEECcCCcCc
Q 041300          480 EKLNLSHNNLS  490 (716)
Q Consensus       480 ~~L~ls~N~l~  490 (716)
                      +.|++++|+|+
T Consensus       297 ~~L~L~~N~l~  307 (310)
T 4glp_A          297 DNLTLDGNPFL  307 (310)
T ss_dssp             SCEECSSTTTS
T ss_pred             cEEECcCCCCC
Confidence            77777777665

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.88  E-value=7.3e-22  Score=203.06  Aligned_cols=192  Identities=24%  Similarity=0.340  Sum_probs=109.6

Q ss_pred             CCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEE
Q 041300          308 YPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLI  387 (716)
Q Consensus       308 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  387 (716)
                      +++|++|++++|.+... + .+..+++|++|++++|.+++..+  +..+++|++|++++|.+++.  ..+..+++|+.|+
T Consensus        40 l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~  113 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLD  113 (308)
T ss_dssp             HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEE
T ss_pred             cCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEE
Confidence            34445555555544432 1 34445555555555555553332  55555555555555555532  2455556666666


Q ss_pred             ccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCcc
Q 041300          388 LRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGG  467 (716)
Q Consensus       388 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~  467 (716)
                      +++|++++. + .+..+++|++|++++|.+++..+  +..+++|+.|++++|++++.. . +..+++|+.|++++|.+++
T Consensus       114 l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~-~-l~~l~~L~~L~l~~n~l~~  187 (308)
T 1h6u_A          114 LTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLT-P-LANLSKLTTLKADDNKISD  187 (308)
T ss_dssp             CTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCC
T ss_pred             CCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCCh-h-hcCCCCCCEEECCCCccCc
Confidence            666666542 2 25566666666666666654333  556666666666666665422 2 5666666666666666664


Q ss_pred             ccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCcccc
Q 041300          468 EIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQG  515 (716)
Q Consensus       468 ~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~  515 (716)
                      ..+  +..+++|+.|++++|++++..+  +..+++|+.|++++|++++
T Consensus       188 ~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          188 ISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             Chh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence            433  5566677777777777765543  5666777777777777654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=1.4e-21  Score=194.86  Aligned_cols=159  Identities=21%  Similarity=0.200  Sum_probs=95.2

Q ss_pred             CCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEcc
Q 041300          334 KLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFS  413 (716)
Q Consensus       334 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls  413 (716)
                      +++.|+|++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|+|++|++++..+..+..+++|++|+|+
T Consensus        36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  115 (251)
T 3m19_A           36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG  115 (251)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcC
Confidence            45555555555555544455555555555555555555445555555555666666665555444555566666666666


Q ss_pred             CCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCccc
Q 041300          414 ANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGL  492 (716)
Q Consensus       414 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~  492 (716)
                      +|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|++++..+..+..+++|+.|++++|++++.
T Consensus       116 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          116 GNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            6666655555556666666666666666655555566666666666666666665555666666777777777766643

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.87  E-value=8.7e-22  Score=202.52  Aligned_cols=196  Identities=23%  Similarity=0.317  Sum_probs=150.7

Q ss_pred             cccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCC
Q 041300          281 LRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQ  360 (716)
Q Consensus       281 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  360 (716)
                      +..+++|+.|++++|.++.. + .+..+++|++|++++|.+.+..+  +..+++|++|++++|++++.  ..+..+++|+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~  110 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIK  110 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred             HHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence            34566777777777777653 2 46677788888888888776544  77788888888888887753  3577888888


Q ss_pred             EEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCc
Q 041300          361 ALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQ  440 (716)
Q Consensus       361 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~  440 (716)
                      +|++++|++++. + .+..+++|+.|++++|++++..+  +..+++|+.|++++|.+++..+  +..+++|+.|++++|+
T Consensus       111 ~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~  184 (308)
T 1h6u_A          111 TLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNK  184 (308)
T ss_dssp             EEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             EEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCc
Confidence            888888888753 3 37788888888888888875433  7788888888888888876443  7888888899999888


Q ss_pred             CcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCccc
Q 041300          441 FVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGL  492 (716)
Q Consensus       441 l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~  492 (716)
                      +++..+  +..+++|++|++++|++++..+  +..+++|+.|++++|++++.
T Consensus       185 l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~  232 (308)
T 1h6u_A          185 ISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQ  232 (308)
T ss_dssp             CCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECC
T ss_pred             cCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecC
Confidence            875433  7788889999999999886654  78889999999999998753

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.85  E-value=5.4e-21  Score=200.58  Aligned_cols=240  Identities=19%  Similarity=0.137  Sum_probs=153.1

Q ss_pred             EEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccC-CCCCCCCCCCE-EEccc
Q 041300          265 AFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEIS-SNWGKCPKLGT-LNVSM  342 (716)
Q Consensus       265 ~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~-L~L~~  342 (716)
                      +++.++++++ .+|..+  .+++++|+|++|+|+...+.+|..+++|++|+|++|++.+.++ ..|.+++++.. +.++.
T Consensus        13 ~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           13 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             EEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             EEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            4555555555 344433  2467777777777776666677777777777777777655433 45667776654 55566


Q ss_pred             CcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccC-CcccccCCcccCCCC-CCCEEEccCCcCCcc
Q 041300          343 NNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRG-NQLTGRLPTEIGSLI-ELEYLDFSANKFNNS  420 (716)
Q Consensus       343 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~  420 (716)
                      |+++...|..|..+++|++|++++|++....+..+....++..|++.+ |++....+..|..+. .++.|+|++|.|+.+
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i  169 (350)
T 4ay9_X           90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI  169 (350)
T ss_dssp             TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred             CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence            777777777777777777777777777765555566666677777754 456655445555553 577778888887754


Q ss_pred             CchhhcCcCCCCEEECcC-CcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCCcC
Q 041300          421 VPESLGNLLKLHYLGLSN-NQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEG  499 (716)
Q Consensus       421 ~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~  499 (716)
                      .+..| ...+|+.|++++ |.++...+..|..+++|++||+++|+|+...+..+   .+|+.|.+.++.--..+| .+..
T Consensus       170 ~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP-~l~~  244 (350)
T 4ay9_X          170 HNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLP-TLEK  244 (350)
T ss_dssp             CTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCC-CTTT
T ss_pred             Chhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCC-Cchh
Confidence            44443 345677777764 55554444567777788888888888775444333   445555544433222344 3677


Q ss_pred             CCCCCEEEccCCc
Q 041300          500 MHGLSIIDISDNQ  512 (716)
Q Consensus       500 ~~~L~~l~ls~N~  512 (716)
                      +++|+.++++++.
T Consensus       245 l~~L~~l~l~~~~  257 (350)
T 4ay9_X          245 LVALMEASLTYPS  257 (350)
T ss_dssp             CCSCCEEECSCHH
T ss_pred             CcChhhCcCCCCc
Confidence            7788888886544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.85  E-value=5.5e-21  Score=184.77  Aligned_cols=180  Identities=22%  Similarity=0.248  Sum_probs=138.4

Q ss_pred             cceeeeeeCCCCCEEEEEcCCCCCccccCCCCCCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCcc
Q 041300           40 CAWYGISCNDAGRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAE  119 (716)
Q Consensus        40 c~w~gv~c~~~~~v~~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  119 (716)
                      |.|.+|.|...+           +. .++   ..-.++|++|++++|.+.+..+..|..+++|++|+|++|.+++..+..
T Consensus         7 C~~~~v~c~~~~-----------l~-~~p---~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~   71 (208)
T 2o6s_A            7 CSGTTVECYSQG-----------RT-SVP---TGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGV   71 (208)
T ss_dssp             EETTEEECCSSC-----------CS-SCC---SCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT
T ss_pred             ECCCEEEecCCC-----------cc-CCC---CCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhh
Confidence            789999997432           22 221   223468999999999999888888999999999999999999777777


Q ss_pred             ccCCCCCCEEEcccccCccCCCccccCCCCCceeecccccccCCCCccccCCcCCcEEEeecccccccccccccCCCCCc
Q 041300          120 VGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLF  199 (716)
Q Consensus       120 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  199 (716)
                      |..+++|++|+|++|.+++..+..|..+++|++|+|++|.+++..+..|.++++|++|++++|.+++..+..+..     
T Consensus        72 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~-----  146 (208)
T 2o6s_A           72 FNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDR-----  146 (208)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT-----
T ss_pred             cCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhcc-----
Confidence            899999999999999999777777899999999999999999888888999999999999999888654444444     


Q ss_pred             eeeCCCCCcccCCCCccCEEEeeCCcCcccCCCccccccccEEEccCCcCccccCcccc
Q 041300          200 ELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNIC  258 (716)
Q Consensus       200 ~L~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~  258 (716)
                                   +++|++|++++|.+.+..|      .+++|+++.|.+++.+|..++
T Consensus       147 -------------l~~L~~L~l~~N~~~~~~~------~l~~L~~~~n~~~g~ip~~~~  186 (208)
T 2o6s_A          147 -------------LTSLQYIWLHDNPWDCTCP------GIRYLSEWINKHSGVVRNSAG  186 (208)
T ss_dssp             -------------CTTCCEEECCSCCBCCCTT------TTHHHHHHHHHCTTTBBCTTS
T ss_pred             -------------CCCccEEEecCCCeecCCC------CHHHHHHHHHhCCceeeccCc
Confidence                         4466777777776654332      355555666666555554443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.84  E-value=5.3e-20  Score=193.00  Aligned_cols=220  Identities=15%  Similarity=0.081  Sum_probs=106.5

Q ss_pred             ccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCcc-chhhCCCCCCCE-EEccCCccccccCCCCCCCCCCCEEEc
Q 041300          263 LEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNI-SEALGLYPNLTF-IDLSRNNFYGEISSNWGKCPKLGTLNV  340 (716)
Q Consensus       263 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~-L~Ls~n~l~~~~~~~~~~l~~L~~L~L  340 (716)
                      ++.|++++|+|+.+.+..|.++++|++|+|++|++.+.+ +.+|..++++.+ +.++.|+++...+..|..+++|++|++
T Consensus        32 l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l  111 (350)
T 4ay9_X           32 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLI  111 (350)
T ss_dssp             CSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEE
T ss_pred             CCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccc
Confidence            444444444444333344455555555555555543322 234445554443 334445555555555555555555555


Q ss_pred             ccCcCcccCcccccCCCCCCEEEccC-CccccccCcccCCCC-CCcEEEccCCcccccCCcccCCCCCCCEEEccC-CcC
Q 041300          341 SMNNITGGIPREIGNMSQLQALDLSL-NHIVGEIPKELGKLN-SLTKLILRGNQLTGRLPTEIGSLIELEYLDFSA-NKF  417 (716)
Q Consensus       341 ~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l  417 (716)
                      ++|+++...+..+....++..|++.+ +++....+..|..+. .++.|++++|+|+. ++.......+|+.|++++ |.+
T Consensus       112 ~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l  190 (350)
T 4ay9_X          112 SNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNL  190 (350)
T ss_dssp             EEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTC
T ss_pred             cccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC-CChhhccccchhHHhhccCCcc
Confidence            55555544444444444555555543 344433334444443 35556666666653 333333344555666543 444


Q ss_pred             CccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCC
Q 041300          418 NNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHN  487 (716)
Q Consensus       418 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N  487 (716)
                      +...+..|.++++|++|++++|+|+...+..   +.+|+.|.+.++.--..+| .+..+++|+.++++++
T Consensus       191 ~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          191 EELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP  256 (350)
T ss_dssp             CCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred             cCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence            4333345556666666666666665333222   2344444433332222344 2455666666666544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.83  E-value=3.4e-20  Score=179.20  Aligned_cols=130  Identities=22%  Similarity=0.274  Sum_probs=52.3

Q ss_pred             CCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEcc
Q 041300          310 NLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILR  389 (716)
Q Consensus       310 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  389 (716)
                      +|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|+++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  108 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN  108 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence            44444444444443333334444444444444444443333333444444444444444443333333344444444444


Q ss_pred             CCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCC
Q 041300          390 GNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNN  439 (716)
Q Consensus       390 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  439 (716)
                      +|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|
T Consensus       109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N  158 (208)
T 2o6s_A          109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN  158 (208)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred             CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence            44443333333333344444444444443333333333333333333333

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.81  E-value=2.4e-19  Score=174.53  Aligned_cols=155  Identities=21%  Similarity=0.258  Sum_probs=112.5

Q ss_pred             CEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCC
Q 041300          360 QALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNN  439 (716)
Q Consensus       360 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  439 (716)
                      +.++++++.++ .+|..+.  ++|+.|++++|++++..+..|..+++|+.|+|++|.+++..|..|.++++|++|+|++|
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            45566666665 3444332  46677777777776665556777777777777777777666777777777777777777


Q ss_pred             cCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCcccccC
Q 041300          440 QFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPV  517 (716)
Q Consensus       440 ~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~~  517 (716)
                      +++...+..|.++++|++|+|++|++++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|++++|++.+..
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  168 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDC  168 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCC
Confidence            777555555677778888888888887777777888888888888888888877777888888888888888887643

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.81  E-value=1.5e-19  Score=199.40  Aligned_cols=186  Identities=22%  Similarity=0.320  Sum_probs=100.2

Q ss_pred             CccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcc
Q 041300          262 LLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVS  341 (716)
Q Consensus       262 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  341 (716)
                      .++.|++++|.+++ +|..+  +++|+.|++++|+++.. |   ..+++|++|++++|.+++ +|. +..  +|+.|+|+
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~i-p---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALISL-P---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCccc-c---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            56666666666665 44433  25566666666666632 2   334566666666666665 333 333  56666666


Q ss_pred             cCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccC
Q 041300          342 MNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSV  421 (716)
Q Consensus       342 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  421 (716)
                      +|++++ +|.   .+++|+.|++++|.+++ +|.   .+++|+.|+|++|++++ +|. +.  ++|+.|+|++|.|+ .+
T Consensus       129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l  195 (571)
T 3cvr_A          129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL  195 (571)
T ss_dssp             SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred             CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence            666654 333   45566666666666653 333   34556666666666654 444 43  55666666666665 33


Q ss_pred             chhhcCcCCC-------CEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccC
Q 041300          422 PESLGNLLKL-------HYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICS  475 (716)
Q Consensus       422 ~~~~~~l~~L-------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~  475 (716)
                      |. +..  +|       +.|+|++|+|+ .+|..+..+++|+.|++++|.+++.+|..+..
T Consensus       196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred             hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence            33 332  44       55555555555 34444445555555555555555555554443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.81  E-value=2.1e-19  Score=174.86  Aligned_cols=156  Identities=21%  Similarity=0.236  Sum_probs=113.0

Q ss_pred             CEEEccCCccccccCcccCCCCCCcEEEccCCcccccCC-cccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcC
Q 041300          360 QALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLP-TEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSN  438 (716)
Q Consensus       360 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  438 (716)
                      +.+++++|.++ .+|..+.  +.++.|+|++|++++..+ ..|..+++|+.|+|++|.|++..+..|.++++|++|+|++
T Consensus        14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            35666666665 3444332  235666777777665533 3356677777777777777766666777777777777777


Q ss_pred             CcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCcccccCC
Q 041300          439 NQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVP  518 (716)
Q Consensus       439 N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~~p  518 (716)
                      |++++..+..|..+++|++|++++|++++..|..|..+++|+.|+|++|+|++..|..|..+++|+.|++++|++.+..+
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            77776666677777888888888888887777788888888888888888888878888888888888888888887654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.81  E-value=1.9e-19  Score=198.48  Aligned_cols=186  Identities=22%  Similarity=0.315  Sum_probs=82.2

Q ss_pred             cccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEcc
Q 041300          238 MLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLS  317 (716)
Q Consensus       238 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls  317 (716)
                      +++.|++++|.+++ +|..+  .+.|+.|++++|+++ .+|   ..+++|+.|++++|++++ +|. +..  +|++|+|+
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            34455555555544 23222  134555555555544 233   223445555555555544 222 222  45555555


Q ss_pred             CCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccC
Q 041300          318 RNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRL  397 (716)
Q Consensus       318 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  397 (716)
                      +|.+++ +|.   .+++|+.|++++|++++ +|.   .+++|++|++++|++++ +|. +.  ++|+.|+|++|+|+ .+
T Consensus       129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l  195 (571)
T 3cvr_A          129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL  195 (571)
T ss_dssp             SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred             CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence            555544 222   34445555555555543 222   33445555555555543 333 32  44555555555554 33


Q ss_pred             CcccCCCCCC-------CEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhC
Q 041300          398 PTEIGSLIEL-------EYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEK  451 (716)
Q Consensus       398 ~~~~~~l~~L-------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  451 (716)
                      |. +..  +|       +.|+|++|.|+ .+|..+..+++|+.|+|++|++++..|..+..
T Consensus       196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred             hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence            33 322  34       45555555554 23444444555555555555554444444443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.81  E-value=1.3e-19  Score=190.82  Aligned_cols=158  Identities=26%  Similarity=0.233  Sum_probs=82.1

Q ss_pred             CCEEEccCCccccccCcccC-CCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECc
Q 041300          359 LQALDLSLNHIVGEIPKELG-KLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLS  437 (716)
Q Consensus       359 L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  437 (716)
                      ++.|+|++|+|++..+..+. .+++|+.|+|++|+|++..+..|..+++|++|+|++|.|+...+..|.++++|+.|+|+
T Consensus        41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  120 (361)
T 2xot_A           41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY  120 (361)
T ss_dssp             CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence            44455555554444444444 44555555555555554444445555555555555555554444445555555555555


Q ss_pred             CCcCcccCChhhhCCCCCCEEECCCCcCccccchhc---cCCCCCCEEECcCCcCcccCCcCCcCCCC--CCEEEccCCc
Q 041300          438 NNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQI---CSLKSLEKLNLSHNNLSGLIPNCFEGMHG--LSIIDISDNQ  512 (716)
Q Consensus       438 ~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~---~~l~~L~~L~ls~N~l~~~~~~~~~~~~~--L~~l~ls~N~  512 (716)
                      +|+++...|..|..+++|+.|+|++|++++..+..+   ..+++|+.|+|++|+|+.+.+..|..++.  ++.|++++|+
T Consensus       121 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          121 NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP  200 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred             CCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence            555555445555555555555555555554333333   34566666666666666554455555554  3566666666


Q ss_pred             cccc
Q 041300          513 LQGP  516 (716)
Q Consensus       513 l~~~  516 (716)
                      +.+.
T Consensus       201 ~~C~  204 (361)
T 2xot_A          201 LECD  204 (361)
T ss_dssp             EECC
T ss_pred             ccCC
Confidence            6543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.79  E-value=7.1e-19  Score=172.35  Aligned_cols=160  Identities=23%  Similarity=0.252  Sum_probs=133.0

Q ss_pred             CCcceeeeeeCCCCCEEEEEcCCCCCccccCCCCCCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCC
Q 041300           38 SPCAWYGISCNDAGRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIP  117 (716)
Q Consensus        38 ~~c~w~gv~c~~~~~v~~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  117 (716)
                      ..|.|.+|.|...           ++. .++. .  -.++|++|+|++|.+.+..|..|.++++|++|+|++|.|+...+
T Consensus        17 ~~Cs~~~v~c~~~-----------~l~-~ip~-~--~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~   81 (229)
T 3e6j_A           17 CSCSGTTVDCRSK-----------RHA-SVPA-G--IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPV   81 (229)
T ss_dssp             CEEETTEEECTTS-----------CCS-SCCS-C--CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             CEEeCCEeEccCC-----------CcC-ccCC-C--CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcCh
Confidence            6899999999642           222 3322 1  23789999999999999999999999999999999999987777


Q ss_pred             ccccCCCCCCEEEcccccCccCCCccccCCCCCceeecccccccCCCCccccCCcCCcEEEeecccccccccccccCCCC
Q 041300          118 AEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKF  197 (716)
Q Consensus       118 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  197 (716)
                      ..|..+++|++|+|++|.+++..+..|..+++|++|+|++|.++ .+|..+.++++|++|+|++|.+++..+..+.    
T Consensus        82 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~----  156 (229)
T 3e6j_A           82 GVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFD----  156 (229)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTT----
T ss_pred             hhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHh----
Confidence            78899999999999999999888888999999999999999998 6788899999999999999999865444444    


Q ss_pred             CceeeCCCCCcccCCCCccCEEEeeCCcCcccCC
Q 041300          198 LFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIP  231 (716)
Q Consensus       198 L~~L~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~  231 (716)
                                    .+++|+.|++++|.+....+
T Consensus       157 --------------~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          157 --------------RLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             --------------TCTTCCEEECTTSCBCTTBG
T ss_pred             --------------CCCCCCEEEeeCCCccCCcc
Confidence                          44577888888888775443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.79  E-value=8.9e-19  Score=178.36  Aligned_cols=171  Identities=23%  Similarity=0.324  Sum_probs=91.4

Q ss_pred             CCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEE
Q 041300          307 LYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKL  386 (716)
Q Consensus       307 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  386 (716)
                      .+++|+.|++++|.+...  ..+..+++|+.|++++|++++..+  +..+++|++|++++|.+++               
T Consensus        44 ~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~---------------  104 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD---------------  104 (291)
T ss_dssp             HHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC---------------
T ss_pred             hcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC---------------
Confidence            345566666666655533  124445555555555555554332  4445555555555555442               


Q ss_pred             EccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCc
Q 041300          387 ILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFG  466 (716)
Q Consensus       387 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~  466 (716)
                                + +.+..+++|++|++++|.+.+.  ..+..+++|+.|++++|++++.  ..+..+++|++|++++|.++
T Consensus       105 ----------~-~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~  169 (291)
T 1h6t_A          105 ----------L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS  169 (291)
T ss_dssp             ----------G-GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred             ----------C-hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccc
Confidence                      1 1244555555555555555432  2345555555555555555532  34555566666666666665


Q ss_pred             cccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCcccc
Q 041300          467 GEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQG  515 (716)
Q Consensus       467 ~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~  515 (716)
                      +..|  +..+++|+.|++++|+++.. + .+..+++|+.|++++|++..
T Consensus       170 ~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          170 DIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred             cchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence            4443  55666666666666666653 2 25666666666666666654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.79  E-value=1.2e-18  Score=170.66  Aligned_cols=156  Identities=24%  Similarity=0.301  Sum_probs=112.8

Q ss_pred             CCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcC
Q 041300          359 LQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSN  438 (716)
Q Consensus       359 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  438 (716)
                      .+.++.+++.+. .+|..+.  ++|+.|+|++|++++..|..+..+++|++|+|++|.+....+..|..+++|++|+|++
T Consensus        21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            455666666665 4444332  5677777777777766666677777777777777777655556667777777777777


Q ss_pred             CcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCcccccCC
Q 041300          439 NQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVP  518 (716)
Q Consensus       439 N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~~p  518 (716)
                      |++++..+..|..+++|++|++++|+++ .+|..+..+++|+.|++++|+|++..+..|..+++|+.|++++|++.+..+
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            7777666666777777888888888777 567777778888888888888887777778888888888888888877654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.79  E-value=1.2e-18  Score=169.42  Aligned_cols=151  Identities=19%  Similarity=0.247  Sum_probs=91.3

Q ss_pred             EEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCc
Q 041300          337 TLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANK  416 (716)
Q Consensus       337 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~  416 (716)
                      .++++++.++. +|..+.  ++|+.|++++|+|++..+..|..+++|+.|+|++|++++..|..|.++++|++|+|++|.
T Consensus        15 ~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           15 IVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             EEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            44444444442 233222  455566666666655445555566666666666666665555666666666666666666


Q ss_pred             CCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCc
Q 041300          417 FNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLS  490 (716)
Q Consensus       417 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~  490 (716)
                      |+...+..|.++++|++|+|++|++++..|..|..+++|+.|+|++|.+++..+..+..+++|+.|++++|.+.
T Consensus        92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            66554455566666666666666666655666666666666666666666666666666677777777777665

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.79  E-value=7.1e-19  Score=179.09  Aligned_cols=184  Identities=23%  Similarity=0.293  Sum_probs=130.4

Q ss_pred             EecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCc
Q 041300          267 IVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNIT  346 (716)
Q Consensus       267 ~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  346 (716)
                      .+..+.+.+..  .+..+++|+.|++++|.++..  ..+..+++|++|++++|.+++..+  +..+++|+.|++++|+++
T Consensus        30 ~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~  103 (291)
T 1h6t_A           30 NLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK  103 (291)
T ss_dssp             HTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             HhcCCCccccc--chhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC
Confidence            34555554432  345788999999999999876  347889999999999999998655  889999999999999998


Q ss_pred             ccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhc
Q 041300          347 GGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLG  426 (716)
Q Consensus       347 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  426 (716)
                      +.  ..+..+++|++|++++|++++.  ..+..+++|+.|++++|++++.  ..+..+++|+.|++++|.+++..+  +.
T Consensus       104 ~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~  175 (291)
T 1h6t_A          104 DL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LA  175 (291)
T ss_dssp             CG--GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GT
T ss_pred             CC--hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hc
Confidence            63  3488899999999999998753  4566777777777777777643  456666666666666666665433  55


Q ss_pred             CcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCc
Q 041300          427 NLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFG  466 (716)
Q Consensus       427 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~  466 (716)
                      .+++|+.|++++|.++. ++ .+..+++|+.|++++|.+.
T Consensus       176 ~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          176 GLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             TCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred             CCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCccc
Confidence            56666666666665553 22 2444444555555444443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.79  E-value=1.4e-18  Score=168.98  Aligned_cols=152  Identities=21%  Similarity=0.188  Sum_probs=98.9

Q ss_pred             EEEcccCcCcccCcccccCCCCCCEEEccCCccccccC-cccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCC
Q 041300          337 TLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIP-KELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSAN  415 (716)
Q Consensus       337 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N  415 (716)
                      .+++++|.++. +|..+.  ..+++|++++|++++..+ ..|..+++|+.|+|++|++++..+..|..+++|++|+|++|
T Consensus        15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           15 TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            45555555543 333322  334566666666665433 33566666666666666666655556666777777777777


Q ss_pred             cCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcc
Q 041300          416 KFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSG  491 (716)
Q Consensus       416 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~  491 (716)
                      .+++..+..|.++++|++|+|++|++++..|..|..+++|++|+|++|++++..|..|..+++|+.|++++|.+.+
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred             ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence            7766666666677777777777777776666667777777777777777776667777777777777777777764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.78  E-value=1.3e-18  Score=183.23  Aligned_cols=175  Identities=23%  Similarity=0.187  Sum_probs=90.1

Q ss_pred             EEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCC-CCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCC
Q 041300          289 RVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWG-KCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLN  367 (716)
Q Consensus       289 ~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  367 (716)
                      .+++++++++..+. .+  .+.++.|+|++|.+++..+..|. .+++|+.|+|++|+|++..+..|..+++|++|+|++|
T Consensus        22 ~l~c~~~~l~~iP~-~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           22 ILSCSKQQLPNVPQ-SL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             EEECCSSCCSSCCS-SC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EEEeCCCCcCccCc-cC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence            44555555543222 11  23355555555555555554454 5555555555555555555555555555555555555


Q ss_pred             ccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhh---cCcCCCCEEECcCCcCccc
Q 041300          368 HIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESL---GNLLKLHYLGLSNNQFVLE  444 (716)
Q Consensus       368 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~~  444 (716)
                      ++++..+..|..+++|+.|+|++|++++..|..|..+++|+.|+|++|.|++..+..|   ..+++|+.|+|++|+++..
T Consensus        99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l  178 (361)
T 2xot_A           99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL  178 (361)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred             cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence            5554444455555555555555555555555555555555555555555554333333   3455555555555555543


Q ss_pred             CChhhhCCCC--CCEEECCCCcCc
Q 041300          445 LPKELEKLVQ--LSELDASHNLFG  466 (716)
Q Consensus       445 ~~~~~~~l~~--L~~L~ls~N~l~  466 (716)
                      .+..+..++.  ++.|++++|.+.
T Consensus       179 ~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          179 PLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CHHHhhhccHhhcceEEecCCCcc
Confidence            3344444443  244555555443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.78  E-value=3.1e-20  Score=212.64  Aligned_cols=218  Identities=22%  Similarity=0.204  Sum_probs=124.0

Q ss_pred             HHHHHHHHHHhhcccCCCCCCCCCcCCCCCCCCCCCCcceeeeeeCCCCCEEEEEcCCCCCccccCCCCCCCCCCCcEEE
Q 041300            3 EEADALLKWKASLQSHNQSLLPSWTNASTNVSSKISPCAWYGISCNDAGRVTNISLRNTGLSGTLRDFSFSSFPQLVHLD   82 (716)
Q Consensus         3 ~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~c~w~gv~c~~~~~v~~l~l~~~~l~~~~~~~~f~~l~~L~~L~   82 (716)
                      .++++|+++.......      +|.....+.......++|.+++++ .++++.|+|.++++... +.      ..|+.++
T Consensus       132 ~~~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~~l~L~~n~~~~~-~~------~~l~~l~  197 (727)
T 4b8c_D          132 CTKQALMEMADTLTDS------KTAKKQQPTGDSTPSGTATNSAVS-TPLTPKIELFANGKDEA-NQ------ALLQHKK  197 (727)
T ss_dssp             CCCHHHHHHHHHHHHH------HTTC------------------------------------------------------
T ss_pred             cchhhhhhhhhhcccc------cCcccCCCcCCCCccccCCCceec-CCccceEEeeCCCCCcc-hh------hHhhcCc
Confidence            4567888887766322      232222122222345789998886 47899999999888642 11      2234444


Q ss_pred             CCCCCccc---------cCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcccccCccCCCccccCCCCCcee
Q 041300           83 LSLNGFFG---------TIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEEL  153 (716)
Q Consensus        83 Ls~n~i~~---------~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  153 (716)
                      |+.|.|.+         ..+..|..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.|+ .+|..|..+++|++|
T Consensus       198 Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L  275 (727)
T 4b8c_D          198 LSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVL  275 (727)
T ss_dssp             ------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEE
T ss_pred             cCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEE
Confidence            44444432         45778999999999999999998 67777778999999999999998 788889999999999


Q ss_pred             ecccccccCCCCccccCCcCCcEEEeecccccccccccccCCCCCceeeCCCCCcccCCCCccCEEEeeCCcCcccCCCc
Q 041300          154 FLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPS  233 (716)
Q Consensus       154 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  233 (716)
                      +|++|.|+ .+|..|+++++|+.|+|++|.|+ .+|.                  .+.++++|+.|+|++|.+++.+|..
T Consensus       276 ~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~------------------~~~~l~~L~~L~L~~N~l~~~~p~~  335 (727)
T 4b8c_D          276 DLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPW------------------EFGNLCNLQFLGVEGNPLEKQFLKI  335 (727)
T ss_dssp             ECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCS------------------STTSCTTCCCEECTTSCCCSHHHHH
T ss_pred             eCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccCh------------------hhhcCCCccEEeCCCCccCCCChHH
Confidence            99999998 66888999999999999999886 3333                  3445568888999999999888877


Q ss_pred             cccc--cccEEEccCCcCccccCcc
Q 041300          234 FGNS--MLTWLTLSGNHFTGYLPHN  256 (716)
Q Consensus       234 ~~~~--~L~~L~L~~n~l~~~~~~~  256 (716)
                      +...  ....++|++|.+++.+|..
T Consensus       336 ~~~~~~~~~~l~l~~N~l~~~~p~~  360 (727)
T 4b8c_D          336 LTEKSVTGLIFYLRDNRPEIPLPHE  360 (727)
T ss_dssp             HHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred             HhhcchhhhHHhhccCcccCcCccc
Confidence            7553  3345678888887766653

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.78  E-value=1.4e-18  Score=193.74  Aligned_cols=171  Identities=25%  Similarity=0.292  Sum_probs=87.6

Q ss_pred             ccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCE
Q 041300          282 RNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQA  361 (716)
Q Consensus       282 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  361 (716)
                      ..+++|+.|++++|.+....  .+..+++|+.|+|++|.+.+..+  +..+++|+.|+|++|.+++.  ..+..+++|+.
T Consensus        40 ~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~  113 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKS  113 (605)
T ss_dssp             HHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCCE
T ss_pred             hcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCCE
Confidence            34555555666665555432  34555555555555555554433  45555555555555555532  24455555555


Q ss_pred             EEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcC
Q 041300          362 LDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQF  441 (716)
Q Consensus       362 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  441 (716)
                      |+|++|.+.+.  ..+..+++|+.|+|++|++++.  ..+..+++|+.|+|++|.+.+..|  +..+++|+.|+|++|++
T Consensus       114 L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i  187 (605)
T 1m9s_A          114 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI  187 (605)
T ss_dssp             EECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             EEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC
Confidence            55555555431  2344555555555555555533  344555555555555555554333  44555555555555555


Q ss_pred             cccCChhhhCCCCCCEEECCCCcCc
Q 041300          442 VLELPKELEKLVQLSELDASHNLFG  466 (716)
Q Consensus       442 ~~~~~~~~~~l~~L~~L~ls~N~l~  466 (716)
                      ++.  ..+..+++|+.|+|++|.+.
T Consensus       188 ~~l--~~l~~l~~L~~L~L~~N~l~  210 (605)
T 1m9s_A          188 SDL--RALAGLKNLDVLELFSQECL  210 (605)
T ss_dssp             CBC--GGGTTCTTCSEEECCSEEEE
T ss_pred             CCC--hHHccCCCCCEEEccCCcCc
Confidence            432  23445555555555555544

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.77  E-value=1.6e-18  Score=193.32  Aligned_cols=191  Identities=23%  Similarity=0.287  Sum_probs=162.7

Q ss_pred             cccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEcc
Q 041300          238 MLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLS  317 (716)
Q Consensus       238 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls  317 (716)
                      .+..+.+..+.+.+..+  +..+..|+.|++++|.+... + .+..+++|+.|+|++|.+++..+  +..+++|+.|+|+
T Consensus        22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls   95 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD   95 (605)
T ss_dssp             HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred             HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence            45566777777776544  45677899999999999854 3 58899999999999999998765  8889999999999


Q ss_pred             CCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccC
Q 041300          318 RNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRL  397 (716)
Q Consensus       318 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  397 (716)
                      +|.+.+.  ..+..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|++++..
T Consensus        96 ~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~  169 (605)
T 1m9s_A           96 ENKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV  169 (605)
T ss_dssp             SSCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCG
T ss_pred             CCCCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCch
Confidence            9999864  3688999999999999999864  4688999999999999999865  67889999999999999999765


Q ss_pred             CcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCccc
Q 041300          398 PTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLE  444 (716)
Q Consensus       398 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  444 (716)
                      |  +..+++|+.|+|++|.|.+.  ..+..+++|+.|+|++|++...
T Consensus       170 ~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          170 P--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             G--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred             h--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence            5  88999999999999999864  4688999999999999999854

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.75  E-value=5e-18  Score=162.27  Aligned_cols=150  Identities=17%  Similarity=0.225  Sum_probs=69.8

Q ss_pred             CCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEEC
Q 041300          357 SQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGL  436 (716)
Q Consensus       357 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  436 (716)
                      ++|+.|++++|.++ .+| .+..+++|++|++++|.++  .+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  119 (197)
T 4ezg_A           44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI  119 (197)
T ss_dssp             HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred             CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence            33444444444443 222 2334444444444444332  1123444444444444444444434444444455555555


Q ss_pred             cCCcCcccCChhhhCCCCCCEEECCCCc-CccccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCccc
Q 041300          437 SNNQFVLELPKELEKLVQLSELDASHNL-FGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQ  514 (716)
Q Consensus       437 s~N~l~~~~~~~~~~l~~L~~L~ls~N~-l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~  514 (716)
                      ++|++++..|..+..+++|++|++++|. ++ .+| .+..+++|+.|++++|++++..  .+..+++|+.|++++|++.
T Consensus       120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          120 SHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             CSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC---
T ss_pred             cCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccC
Confidence            5555544444445555555555555554 33 233 3455555566666666555432  4555566666666666654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.74  E-value=1.3e-17  Score=159.33  Aligned_cols=151  Identities=19%  Similarity=0.272  Sum_probs=80.0

Q ss_pred             CCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEE
Q 041300          332 CPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLD  411 (716)
Q Consensus       332 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  411 (716)
                      +++|+.|++++|.++ .+| .+..+++|++|++++|.++  .+..+..+++|++|++++|++++..+..+..+++|++|+
T Consensus        43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            344444444444444 222 3444555555555555443  223455555555555555555554555555555666666


Q ss_pred             ccCCcCCccCchhhcCcCCCCEEECcCCc-CcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCc
Q 041300          412 FSANKFNNSVPESLGNLLKLHYLGLSNNQ-FVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLS  490 (716)
Q Consensus       412 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~  490 (716)
                      +++|.+++..|..+..+++|++|++++|+ +. .+| .+..+++|+.|++++|.+++. + .+..+++|+.|++++|++.
T Consensus       119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC---
T ss_pred             ecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccC
Confidence            66666555555555556666666666665 33 333 455566666666666666542 2 4556666666666666654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.74  E-value=3.7e-18  Score=170.96  Aligned_cols=167  Identities=21%  Similarity=0.250  Sum_probs=94.3

Q ss_pred             CCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccC
Q 041300          335 LGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSA  414 (716)
Q Consensus       335 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~  414 (716)
                      +..++++.|.+++..  .+..+++|++|++++|.++. ++ .+..+++|+.|++++|++++..+  +..+++|+.|+|++
T Consensus        21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~   94 (263)
T 1xeu_A           21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR   94 (263)
T ss_dssp             HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred             HHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence            334444444444222  34445555555555555542 23 34555555555555555553322  55555566666666


Q ss_pred             CcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCC
Q 041300          415 NKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIP  494 (716)
Q Consensus       415 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~  494 (716)
                      |.+++. |. +.. ++|+.|++++|++++.  ..+..+++|+.|++++|++++. + .+..+++|+.|++++|++++.  
T Consensus        95 N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--  165 (263)
T 1xeu_A           95 NRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--  165 (263)
T ss_dssp             SCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--
T ss_pred             CccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--
Confidence            655542 21 112 5666666666666542  2466666666667766666643 2 456667777777777777665  


Q ss_pred             cCCcCCCCCCEEEccCCccccc
Q 041300          495 NCFEGMHGLSIIDISDNQLQGP  516 (716)
Q Consensus       495 ~~~~~~~~L~~l~ls~N~l~~~  516 (716)
                      ..+..+++|+.|++++|++.+.
T Consensus       166 ~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          166 GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             TTSTTCCCCCEEEEEEEEEECC
T ss_pred             HHhccCCCCCEEeCCCCcccCC
Confidence            5566777777777777777654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.73  E-value=9.8e-18  Score=159.34  Aligned_cols=132  Identities=23%  Similarity=0.324  Sum_probs=81.4

Q ss_pred             cEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCch-hhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCC
Q 041300          384 TKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPE-SLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASH  462 (716)
Q Consensus       384 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~  462 (716)
                      +.+++++|+++ .+|..+..  +|++|++++|.+.+..+. .|..+++|++|+|++|++++..|..|.++++|++|++++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            44555555554 33433322  555666666666544443 355666666666666666665566666666666666666


Q ss_pred             CcCccccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCcccccCC
Q 041300          463 NLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVP  518 (716)
Q Consensus       463 N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~~p  518 (716)
                      |++++..+..|..+++|+.|++++|+|++..|..|..+++|+.|++++|++.+..+
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            66666666666666777777777777776666677777777777777777766544

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.72  E-value=9.9e-18  Score=174.11  Aligned_cols=222  Identities=12%  Similarity=0.001  Sum_probs=154.8

Q ss_pred             cCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCc----CcccCcccccCCCC
Q 041300          283 NCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNN----ITGGIPREIGNMSQ  358 (716)
Q Consensus       283 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~~~~~~l~~  358 (716)
                      +|++|+.|++.+ .++.+...+|..+++|+.+++++|.+....+..|..+.++..+.+..+.    ........|.++..
T Consensus        99 g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~  177 (329)
T 3sb4_A           99 GKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP  177 (329)
T ss_dssp             ECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred             ccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence            377777777777 7777777777777888888888887777777777777766666655422    22233445556666


Q ss_pred             CC-EEEccCCcc-ccccCcccCCCCCCcEEEccCCcccccCCccc-CCCCCCCEEEccCCcCCccCchhhcCcCCCCEEE
Q 041300          359 LQ-ALDLSLNHI-VGEIPKELGKLNSLTKLILRGNQLTGRLPTEI-GSLIELEYLDFSANKFNNSVPESLGNLLKLHYLG  435 (716)
Q Consensus       359 L~-~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  435 (716)
                      |+ .+.+....- .......-....+++.+.+.++-.. .....+ ..+++|+.|+|++|.++.+.+.+|.++++|+.|+
T Consensus       178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~  256 (329)
T 3sb4_A          178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIK  256 (329)
T ss_dssp             CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEE
T ss_pred             cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEE
Confidence            66 444433221 1111111123455666766654222 111111 2367899999999888877778899999999999


Q ss_pred             CcCCcCcccCChhhhCCCCCC-EEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEc
Q 041300          436 LSNNQFVLELPKELEKLVQLS-ELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDI  508 (716)
Q Consensus       436 Ls~N~l~~~~~~~~~~l~~L~-~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~l  508 (716)
                      +.+| +....+.+|.++.+|+ .+++.+ .++.+.+.+|.++++|+.+++++|+++.+.+.+|.++++|+.++.
T Consensus       257 l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          257 LPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             CCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             CCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            9888 7777778899999998 999988 777677888999999999999999999888889999999988864

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.72  E-value=2.2e-18  Score=197.22  Aligned_cols=182  Identities=24%  Similarity=0.262  Sum_probs=92.0

Q ss_pred             ccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCC
Q 041300          324 EISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGS  403 (716)
Q Consensus       324 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  403 (716)
                      ..+..+..+++|+.|+|++|.+. .+|..+..+++|++|+|++|.|+ .+|..|..+++|+.|+|++|+|+ .+|..++.
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~  291 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS  291 (727)
T ss_dssp             -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred             cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence            34555666666777777777766 44555556677777777777776 56666667777777777777776 55666777


Q ss_pred             CCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCC-CCEEECCCCcCccccchhccCCCCCCEE
Q 041300          404 LIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQ-LSELDASHNLFGGEIPFQICSLKSLEKL  482 (716)
Q Consensus       404 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-L~~L~ls~N~l~~~~p~~~~~l~~L~~L  482 (716)
                      +++|++|+|++|.|+ .+|..|..+++|+.|+|++|.+++.+|..+..+.. +..+++++|.+++.+|.      .|+.|
T Consensus       292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l  364 (727)
T 4b8c_D          292 CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFI  364 (727)
T ss_dssp             GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C----
T ss_pred             CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------cccee
Confidence            777777777777765 45656777777777777777776666665543321 12356677777666654      34455


Q ss_pred             ECcCC--------cCcccCCcCCcCCCCCCEEEccCCcccc
Q 041300          483 NLSHN--------NLSGLIPNCFEGMHGLSIIDISDNQLQG  515 (716)
Q Consensus       483 ~ls~N--------~l~~~~~~~~~~~~~L~~l~ls~N~l~~  515 (716)
                      ++++|        .+.+..+..+..+..+....++.|-+.+
T Consensus       365 ~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~  405 (727)
T 4b8c_D          365 EINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQ  405 (727)
T ss_dssp             -------------------------------------CCCG
T ss_pred             EeecccccccccCCccccccchhhcccccceeeeecccccc
Confidence            55555        3444444445555566666777777654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.71  E-value=5e-20  Score=204.34  Aligned_cols=121  Identities=17%  Similarity=0.219  Sum_probs=87.0

Q ss_pred             ccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEccc
Q 041300          263 LEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSM  342 (716)
Q Consensus       263 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  342 (716)
                      |+.|++++|.+++ +|. +.++++|+.|+|++|.++ .+|..+..+++|+.|+|++|.+++ +| .++.+++|+.|+|++
T Consensus       443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~  517 (567)
T 1dce_A          443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN  517 (567)
T ss_dssp             CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred             ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence            5556666666654 344 677777777777777777 456677777888888888888876 34 677788888888888


Q ss_pred             CcCcccC-cccccCCCCCCEEEccCCccccccCcc---cCCCCCCcEEEc
Q 041300          343 NNITGGI-PREIGNMSQLQALDLSLNHIVGEIPKE---LGKLNSLTKLIL  388 (716)
Q Consensus       343 n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~L~L  388 (716)
                      |++++.. |..+..+++|+.|+|++|.+++..|..   +..+++|+.|++
T Consensus       518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            8888766 778888888888888888887654422   334777887764

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.71  E-value=2.2e-17  Score=165.28  Aligned_cols=170  Identities=20%  Similarity=0.224  Sum_probs=90.7

Q ss_pred             CCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEE
Q 041300          284 CTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALD  363 (716)
Q Consensus       284 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  363 (716)
                      +.++..+++++|.++...  .+..+++|++|++++|.++.. + .+..+++|+.|++++|++++..+  +..+++|++|+
T Consensus        18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~   91 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred             HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence            344555566666665433  344555666666666655532 2 34445555555555555553332  44455555555


Q ss_pred             ccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcc
Q 041300          364 LSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVL  443 (716)
Q Consensus       364 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  443 (716)
                      +++|++++                         +|. +.. ++|+.|+|++|.+++.  ..+..+++|+.|++++|++++
T Consensus        92 L~~N~l~~-------------------------l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~  142 (263)
T 1xeu_A           92 VNRNRLKN-------------------------LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS  142 (263)
T ss_dssp             CCSSCCSC-------------------------CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCB
T ss_pred             CCCCccCC-------------------------cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCC
Confidence            55555443                         221 111 4555555555555532  235555556666666666553


Q ss_pred             cCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCccc
Q 041300          444 ELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGL  492 (716)
Q Consensus       444 ~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~  492 (716)
                      . + .+..+++|+.|++++|.+++.  ..+..+++|+.|++++|+++..
T Consensus       143 ~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          143 I-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             C-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             C-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            2 2 455566666666666666644  4456667777777777776654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.70  E-value=1.7e-17  Score=172.25  Aligned_cols=282  Identities=10%  Similarity=0.035  Sum_probs=161.6

Q ss_pred             CCCCcEEECCCCCccccCcccccC-CCCCCEEECcCCcCc--ccCCccccCCCCCCEEEcccccCccCCCccccC-----
Q 041300           75 FPQLVHLDLSLNGFFGTIPSQIGN-LTKLSYISLDSNQLS--GKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQ-----  146 (716)
Q Consensus        75 l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-----  146 (716)
                      +.+++.|+++++ +....-..+.. +++|++|||++|++.  ...+..+   +.++.+.+..|.   +.+.+|.+     
T Consensus        24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~---I~~~aF~~~~~~~   96 (329)
T 3sb4_A           24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANF---VPAYAFSNVVNGV   96 (329)
T ss_dssp             HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTE---ECTTTTEEEETTE
T ss_pred             hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccccc---cccccccccccc---cCHHHhccccccc
Confidence            445666666653 11111122333 566777777777665  2222222   223444444442   23344555     


Q ss_pred             ---CCCCceeecccccccCCCCccccCCcCCcEEEeecccccccccccccCCCCCceeeCCC----------CCcccCCC
Q 041300          147 ---LSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSF----------LPLSVGNL  213 (716)
Q Consensus       147 ---l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~----------~~~~~~~l  213 (716)
                         +++|++|+|.+ .++.+.+.+|.++++|+.|++.+|.++...+..|..+..+..+....          ....|.++
T Consensus        97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~  175 (329)
T 3sb4_A           97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG  175 (329)
T ss_dssp             EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred             ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence               67777777766 66666666677777777777777766655555555555444444332          11122333


Q ss_pred             CccC-EEEeeCCcCcccCCCccccccccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEc
Q 041300          214 TNLK-SLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRL  292 (716)
Q Consensus       214 ~~L~-~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l  292 (716)
                      ..|+ .+.+....   .++..+.                   ........+..+.+.++-...........+++|+.+++
T Consensus       176 ~~L~~~i~~~~~~---~l~~~~~-------------------~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L  233 (329)
T 3sb4_A          176 EPLETTIQVGAMG---KLEDEIM-------------------KAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDI  233 (329)
T ss_dssp             CCCEEEEEECTTC---CHHHHHH-------------------HTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEEC
T ss_pred             cccceeEEecCCC---cHHHHHh-------------------hcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEEC
Confidence            3333 22222110   0111000                   00001222333333332111111111123678888888


Q ss_pred             cCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCC-EEEcccCcCcccCcccccCCCCCCEEEccCCcccc
Q 041300          293 NGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLG-TLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVG  371 (716)
Q Consensus       293 ~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  371 (716)
                      .+|+++.+...+|..+++|+.+++++| +..+.+..|.+|++|+ .+++.+ .++...+.+|.++++|+.+++++|.++.
T Consensus       234 ~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~  311 (329)
T 3sb4_A          234 SKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITT  311 (329)
T ss_dssp             TTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCE
T ss_pred             CCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCc
Confidence            888888877888888888888888887 7777777888888888 888887 6776777888888888888888888887


Q ss_pred             ccCcccCCCCCCcEEEc
Q 041300          372 EIPKELGKLNSLTKLIL  388 (716)
Q Consensus       372 ~~~~~~~~l~~L~~L~L  388 (716)
                      ..+..|.++++|+.++.
T Consensus       312 I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          312 LGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             ECTTTTCTTCCCCEEEC
T ss_pred             cchhhhcCCcchhhhcc
Confidence            77778888888888764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.69  E-value=7.4e-19  Score=194.95  Aligned_cols=190  Identities=21%  Similarity=0.201  Sum_probs=123.0

Q ss_pred             CCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCc-------------CcccCcccccCCCCCCEEE-ccCCccccc
Q 041300          307 LYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNN-------------ITGGIPREIGNMSQLQALD-LSLNHIVGE  372 (716)
Q Consensus       307 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-------------l~~~~~~~~~~l~~L~~L~-L~~n~l~~~  372 (716)
                      ..++|+.|+|++|.++ .+|..++.+++|+.|++++|.             +.+..|..++.+++|+.|+ ++.|.+.  
T Consensus       347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~--  423 (567)
T 1dce_A          347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD--  423 (567)
T ss_dssp             TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH--
T ss_pred             cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc--
Confidence            4556666666666665 445556666666666665543             3334444445555555554 3433321  


Q ss_pred             cCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCC
Q 041300          373 IPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKL  452 (716)
Q Consensus       373 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  452 (716)
                               .|..+.+++|.++...+      ..|+.|+|++|.+++ +|. +..+++|+.|+|++|+++ .+|..++.+
T Consensus       424 ---------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l  485 (567)
T 1dce_A          424 ---------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAAL  485 (567)
T ss_dssp             ---------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGC
T ss_pred             ---------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcC
Confidence                     22233334444443221      147778888888775 454 777788888888888877 667777788


Q ss_pred             CCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccC-CcCCcCCCCCCEEEccCCcccccCCC
Q 041300          453 VQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLI-PNCFEGMHGLSIIDISDNQLQGPVPN  519 (716)
Q Consensus       453 ~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~-~~~~~~~~~L~~l~ls~N~l~~~~p~  519 (716)
                      ++|+.|+|++|.+++ +| .+..+++|+.|+|++|+|++.. |..|..+++|+.|++++|++++.+|.
T Consensus       486 ~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~  551 (567)
T 1dce_A          486 RCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI  551 (567)
T ss_dssp             TTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred             CCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence            888888888888875 55 6777888888888888887776 77777888888888888888776553

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.69  E-value=6.5e-17  Score=153.66  Aligned_cols=129  Identities=25%  Similarity=0.296  Sum_probs=66.4

Q ss_pred             CEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCc-ccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcC
Q 041300          360 QALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPT-EIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSN  438 (716)
Q Consensus       360 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  438 (716)
                      +++++++|+++ .+|..+..  +|+.|++++|++++..+. .+..+++|++|+|++|.|++..|..|.++++|++|+|++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            34444444443 33333221  445555555555433332 244555555555555555555455555555555555555


Q ss_pred             CcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcc
Q 041300          439 NQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSG  491 (716)
Q Consensus       439 N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~  491 (716)
                      |++++..+..|.++++|++|++++|++++..|..+..+++|+.|++++|.+++
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence            55555555555555555555555555555555555555556666666665554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.67  E-value=1.6e-16  Score=150.89  Aligned_cols=131  Identities=28%  Similarity=0.310  Sum_probs=100.8

Q ss_pred             cEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCC
Q 041300          384 TKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHN  463 (716)
Q Consensus       384 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N  463 (716)
                      +.+++++|.++ .+|..+.  ++|+.|+|++|.++ .+|..|.++++|+.|+|++|++++..+..|.++++|++|+|++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            45666666665 4444432  46777777777776 45677777788888888888887777777888888888888888


Q ss_pred             cCccccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCcccccCC
Q 041300          464 LFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVP  518 (716)
Q Consensus       464 ~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~~p  518 (716)
                      ++++..|..|..+++|+.|+|++|+|+...+..|..+++|+.|++++|++.+...
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~  143 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN  143 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence            8887777788888888888888888888777788888899999999999876543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.66  E-value=5.2e-16  Score=145.42  Aligned_cols=134  Identities=23%  Similarity=0.320  Sum_probs=115.2

Q ss_pred             cceeeeeeCCCCCEEEEEcCCCCCccccCCCCCCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCcc
Q 041300           40 CAWYGISCNDAGRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAE  119 (716)
Q Consensus        40 c~w~gv~c~~~~~v~~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  119 (716)
                      |.|.+|.|..           +++. .++   ....++|++|++++|++.+..+..|..+++|++|+|++|.+++..+..
T Consensus         7 C~~~~l~~~~-----------~~l~-~~p---~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~   71 (177)
T 2o6r_A            7 CSGTEIRCNS-----------KGLT-SVP---TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGV   71 (177)
T ss_dssp             EETTEEECCS-----------SCCS-SCC---TTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT
T ss_pred             eCCCEEEecC-----------CCCc-cCC---CCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhH
Confidence            6788887753           3333 232   223478999999999999888888999999999999999999877778


Q ss_pred             ccCCCCCCEEEcccccCccCCCccccCCCCCceeecccccccCCCCccccCCcCCcEEEeecccccccc
Q 041300          120 VGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSI  188 (716)
Q Consensus       120 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~  188 (716)
                      |+.+++|++|+|++|.+++..+..|..+++|++|+|++|.+++..+..|..+++|++|++++|.+++..
T Consensus        72 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A           72 FDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             ccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence            899999999999999999888888999999999999999999888888899999999999999988644

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=99.66  E-value=6.9e-17  Score=163.63  Aligned_cols=88  Identities=32%  Similarity=0.616  Sum_probs=74.9

Q ss_pred             cCCcccccccCCCceEEEEEEcC------CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP------SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ  697 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~------~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~  697 (716)
                      .+|...+.||+|+||+||+|++.      ++..||||+++..   .. ...++|.+|+++|++++|||||+++|+|.+++
T Consensus        13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~---~~-~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~   88 (299)
T 4asz_A           13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDA---SD-NARKDFHREAELLTNLQHEHIVKFYGVCVEGD   88 (299)
T ss_dssp             GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSC---CH-HHHHHHHHHHHHHTTCCCTTBCCEEEEECSSS
T ss_pred             HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCC---Ch-HHHHHHHHHHHHHHhCCCCCCccEEEEEeeCC
Confidence            46778899999999999999763      4678999999753   22 24578999999999999999999999999999


Q ss_pred             eeeEEEcccCCCCHHhHh
Q 041300          698 HSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       698 ~~~lv~Ey~~~GsL~~~l  715 (716)
                      ..|||||||++|+|.++|
T Consensus        89 ~~~lV~Ey~~~G~L~~~l  106 (299)
T 4asz_A           89 PLIMVFEYMKHGDLNKFL  106 (299)
T ss_dssp             SEEEEEECCTTCBHHHHH
T ss_pred             EEEEEEEcCCCCcHHHHH
Confidence            999999999999999987

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.66  E-value=5.6e-15  Score=156.62  Aligned_cols=218  Identities=13%  Similarity=0.117  Sum_probs=110.4

Q ss_pred             CcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccC
Q 041300          287 LIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSL  366 (716)
Q Consensus       287 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  366 (716)
                      |+.+.+.. .++.+...+|..+++|+.++++.|.++......|. +.+|+.+.+.. .++.....+|.++++|+.+++..
T Consensus       159 L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~  235 (401)
T 4fdw_A          159 VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPE  235 (401)
T ss_dssp             CCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCT
T ss_pred             ceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEecCC
Confidence            44444432 33333334444444444444444444443333333 34444444442 23333344444444455554443


Q ss_pred             CccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCC-----ccCchhhcCcCCCCEEECcCCcC
Q 041300          367 NHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFN-----NSVPESLGNLLKLHYLGLSNNQF  441 (716)
Q Consensus       367 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-----~~~~~~~~~l~~L~~L~Ls~N~l  441 (716)
                      | ++.....+|.+ .+|+.+.+. +.++.+....|.++++|+.+++.+|.+.     ...+.+|.++++|+.+.+. +.+
T Consensus       236 ~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i  311 (401)
T 4fdw_A          236 N-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESI  311 (401)
T ss_dssp             T-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTC
T ss_pred             C-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-Cce
Confidence            2 33233334444 445555552 2333344445555555555555555443     2444566666666666666 335


Q ss_pred             cccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCCcCCC-CCCEEEccCCcc
Q 041300          442 VLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMH-GLSIIDISDNQL  513 (716)
Q Consensus       442 ~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~-~L~~l~ls~N~l  513 (716)
                      +.....+|.++.+|+.+++..| ++...+.+|.++ +|+.+++++|.+....+..|.+++ +++.|.+..+.+
T Consensus       312 ~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          312 RILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             CEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             EEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence            5455556666666666666443 444555666666 677777777766666666666663 456666655443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.66  E-value=4.5e-16  Score=144.52  Aligned_cols=132  Identities=21%  Similarity=0.120  Sum_probs=74.9

Q ss_pred             CCCCEEEccCCccc-cccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEE
Q 041300          357 SQLQALDLSLNHIV-GEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLG  435 (716)
Q Consensus       357 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  435 (716)
                      ++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++.  ..+..+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            45556666666655 44555555566666666666666543  4555666666666666666655555555566666666


Q ss_pred             CcCCcCcccC-ChhhhCCCCCCEEECCCCcCccccc---hhccCCCCCCEEECcCCcCc
Q 041300          436 LSNNQFVLEL-PKELEKLVQLSELDASHNLFGGEIP---FQICSLKSLEKLNLSHNNLS  490 (716)
Q Consensus       436 Ls~N~l~~~~-~~~~~~l~~L~~L~ls~N~l~~~~p---~~~~~l~~L~~L~ls~N~l~  490 (716)
                      +++|++++.. +..+..+++|+.|++++|.+++..+   ..+..+++|+.|++++|.+.
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            6666665321 1445555556666666665554433   34555555666666555554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.66  E-value=5e-15  Score=156.97  Aligned_cols=251  Identities=11%  Similarity=0.106  Sum_probs=197.1

Q ss_pred             cCCCccccccccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCC
Q 041300          229 SIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLY  308 (716)
Q Consensus       229 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~  308 (716)
                      .....|....|+.+.+..+ ++.+....|.+ ..|+.+.+.. .+..+.+..|.+|++|+.+++.+|+++.....+|. .
T Consensus       127 I~~~aF~~~~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~  202 (401)
T 4fdw_A          127 IPKDAFRNSQIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-Y  202 (401)
T ss_dssp             ECTTTTTTCCCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-T
T ss_pred             ehHhhcccCCccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-e
Confidence            3344454456666666555 55555555655 3577777775 56666777888899999999999888888888887 4


Q ss_pred             CCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEc
Q 041300          309 PNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLIL  388 (716)
Q Consensus       309 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  388 (716)
                      .+|+.+.+..+ +..+....|.++++|+.+++..| ++.....+|.+ .+|+.+.+ .+.++.....+|.++++|+.+++
T Consensus       203 ~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l  278 (401)
T 4fdw_A          203 AGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTT  278 (401)
T ss_dssp             CCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEE
T ss_pred             cccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEe
Confidence            88999999854 77777888999999999999864 66566677777 78999999 45566677788999999999999


Q ss_pred             cCCccc-----ccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCC
Q 041300          389 RGNQLT-----GRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHN  463 (716)
Q Consensus       389 ~~N~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N  463 (716)
                      .+|.+.     ...+..|.++++|+.++|. +.+..+...+|.++++|+.+.+..| ++.....+|.++ +|+.+++++|
T Consensus       279 ~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n  355 (401)
T 4fdw_A          279 YGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGT  355 (401)
T ss_dssp             ESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCS
T ss_pred             CCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCC
Confidence            888765     4566788999999999998 4577777889999999999999665 666777889999 9999999999


Q ss_pred             cCccccchhccCCC-CCCEEECcCCcCc
Q 041300          464 LFGGEIPFQICSLK-SLEKLNLSHNNLS  490 (716)
Q Consensus       464 ~l~~~~p~~~~~l~-~L~~L~ls~N~l~  490 (716)
                      .+....+..|.+++ .++.|++..+.+.
T Consensus       356 ~~~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          356 TPPQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             SCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             CCcccccccccCCCCCccEEEeCHHHHH
Confidence            98877777888875 7889999888654

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=99.66  E-value=8.9e-17  Score=165.20  Aligned_cols=88  Identities=30%  Similarity=0.647  Sum_probs=76.7

Q ss_pred             cCCcccccccCCCceEEEEEEcC------CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP------SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ  697 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~------~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~  697 (716)
                      .+|...++||+|+||+||+|++.      +++.||||+++..   .. ...++|.+|+++|++++|||||+++|+|.+++
T Consensus        41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~---~~-~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~  116 (329)
T 4aoj_A           41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEA---SE-SARQDFQREAELLTMLQHQHIVRFFGVCTEGR  116 (329)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCC---SH-HHHHHHHHHHHHHTTCCCTTBCCEEEEECSSS
T ss_pred             HHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcC---CH-HHHHHHHHHHHHHHhCCCCCCCcEEEEEEECC
Confidence            45777889999999999999864      4678999999753   22 24578999999999999999999999999999


Q ss_pred             eeeEEEcccCCCCHHhHh
Q 041300          698 HSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       698 ~~~lv~Ey~~~GsL~~~l  715 (716)
                      ..|||||||++|+|.++|
T Consensus       117 ~~~lV~Ey~~~G~L~~~l  134 (329)
T 4aoj_A          117 PLLMVFEYMRHGDLNRFL  134 (329)
T ss_dssp             SEEEEEECCTTCBHHHHH
T ss_pred             EEEEEEEcCCCCcHHHHH
Confidence            999999999999999986

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=99.65  E-value=1.1e-16  Score=162.87  Aligned_cols=88  Identities=22%  Similarity=0.368  Sum_probs=74.9

Q ss_pred             CCcccccccCCCceEEEEEEcC------CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCe
Q 041300          625 DFDAEYCIGNGGHGSVYRAELP------SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQH  698 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~~------~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~  698 (716)
                      ++...+.||+|+||+||+|.+.      +++.||||+++....  . ...++|.+|+.++++++|||||+++|+|.+++.
T Consensus        27 ~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~--~-~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~  103 (308)
T 4gt4_A           27 AVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAE--G-PLREEFRHEAMLRARLQHPNVVCLLGVVTKDQP  103 (308)
T ss_dssp             GEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CC--C--CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred             HCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccC--h-HHHHHHHHHHHHHHhCCCCCCCCcceEEEECCE
Confidence            4566778999999999999863      467899999975321  1 245789999999999999999999999999999


Q ss_pred             eeEEEcccCCCCHHhHh
Q 041300          699 SFLVYEFLERGSLAAIL  715 (716)
Q Consensus       699 ~~lv~Ey~~~GsL~~~l  715 (716)
                      .+||||||++|+|.++|
T Consensus       104 ~~lV~Ey~~~G~L~~~L  120 (308)
T 4gt4_A          104 LSMIFSYCSHGDLHEFL  120 (308)
T ss_dssp             CEEEEECCSSCBHHHHH
T ss_pred             EEEEEEcCCCCcHHHHH
Confidence            99999999999999987

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.65  E-value=5e-16  Score=144.21  Aligned_cols=136  Identities=24%  Similarity=0.272  Sum_probs=122.4

Q ss_pred             CCCCCcEEEccCCccc-ccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCE
Q 041300          379 KLNSLTKLILRGNQLT-GRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSE  457 (716)
Q Consensus       379 ~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  457 (716)
                      ..++|+.|++++|+++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|++++.+|..+..+++|++
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            3478999999999998 67888889999999999999999876  77899999999999999999878888888999999


Q ss_pred             EECCCCcCcccc-chhccCCCCCCEEECcCCcCcccCC---cCCcCCCCCCEEEccCCccccc
Q 041300          458 LDASHNLFGGEI-PFQICSLKSLEKLNLSHNNLSGLIP---NCFEGMHGLSIIDISDNQLQGP  516 (716)
Q Consensus       458 L~ls~N~l~~~~-p~~~~~l~~L~~L~ls~N~l~~~~~---~~~~~~~~L~~l~ls~N~l~~~  516 (716)
                      |++++|.+++.. +..+..+++|+.|++++|++++..+   ..+..+++|+.|++++|.+...
T Consensus       100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  162 (168)
T 2ell_A          100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA  162 (168)
T ss_dssp             EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred             EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence            999999999753 3788999999999999999998766   5789999999999999998754

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.64  E-value=5.3e-16  Score=140.89  Aligned_cols=126  Identities=25%  Similarity=0.274  Sum_probs=57.8

Q ss_pred             CCcEEEccCCccc-ccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEEC
Q 041300          382 SLTKLILRGNQLT-GRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDA  460 (716)
Q Consensus       382 ~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l  460 (716)
                      +|+.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|++++.+|..+..+++|++|++
T Consensus        18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            3444444444443 33333344444444444444444432  33444444444444444444334444444444555555


Q ss_pred             CCCcCccc-cchhccCCCCCCEEECcCCcCcccCC---cCCcCCCCCCEEEcc
Q 041300          461 SHNLFGGE-IPFQICSLKSLEKLNLSHNNLSGLIP---NCFEGMHGLSIIDIS  509 (716)
Q Consensus       461 s~N~l~~~-~p~~~~~l~~L~~L~ls~N~l~~~~~---~~~~~~~~L~~l~ls  509 (716)
                      ++|.+++. .+..+..+++|+.|++++|++++..+   ..+..+++|+.||++
T Consensus        96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            55554432 22444555555555555555554433   344555555555554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.63  E-value=2.2e-15  Score=141.11  Aligned_cols=134  Identities=24%  Similarity=0.243  Sum_probs=97.1

Q ss_pred             CcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCC
Q 041300          383 LTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASH  462 (716)
Q Consensus       383 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~  462 (716)
                      .+.+++++|+++ .+|..+  .++|+.|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++
T Consensus         9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            345666666665 333332  24677777777777765556667777777777777777765556677777888888888


Q ss_pred             CcCccccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCcccccCCC
Q 041300          463 NLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPN  519 (716)
Q Consensus       463 N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~~p~  519 (716)
                      |.+++..+..+..+++|+.|++++|++++..+..|..+++|+.|++++|++.+..|.
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  142 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  142 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCcc
Confidence            888876666677888888888888888877777778888888888888888876653

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.63  E-value=7.1e-16  Score=140.02  Aligned_cols=127  Identities=21%  Similarity=0.135  Sum_probs=81.3

Q ss_pred             CCCCEEEccCCccc-cccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEE
Q 041300          357 SQLQALDLSLNHIV-GEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLG  435 (716)
Q Consensus       357 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  435 (716)
                      ++|+.|++++|.++ +.+|..+..+++|+.|++++|++++.  ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            45566666666665 45555556666666666666666544  4566666677777777776655666666667777777


Q ss_pred             CcCCcCccc-CChhhhCCCCCCEEECCCCcCccccc---hhccCCCCCCEEECc
Q 041300          436 LSNNQFVLE-LPKELEKLVQLSELDASHNLFGGEIP---FQICSLKSLEKLNLS  485 (716)
Q Consensus       436 Ls~N~l~~~-~~~~~~~l~~L~~L~ls~N~l~~~~p---~~~~~l~~L~~L~ls  485 (716)
                      +++|++++. .+..+..+++|++|++++|.+++..+   ..+..+++|+.|+++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            777776642 23566667777777777777765554   456667777777765

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.62  E-value=3.6e-15  Score=141.54  Aligned_cols=127  Identities=26%  Similarity=0.316  Sum_probs=79.9

Q ss_pred             CEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCC
Q 041300          360 QALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNN  439 (716)
Q Consensus       360 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  439 (716)
                      +++++++|.++ .+|..+.  ++|+.|++++|+++ .+|..+..+++|+.|+|++|.|++..+..|.++++|++|+|++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            34555555554 3443332  35666666666665 44555666666666666666666655566666666666666666


Q ss_pred             cCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCc
Q 041300          440 QFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLS  490 (716)
Q Consensus       440 ~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~  490 (716)
                      ++++..+..|.++++|+.|+|++|.++...+..|..+++|+.|++++|.+.
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            666666666666677777777777776555556666777777777777765

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=99.61  E-value=9.4e-16  Score=157.62  Aligned_cols=90  Identities=21%  Similarity=0.338  Sum_probs=73.4

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ++|...+.||+|+||+||+|+. .+|+.||||++...... . ...+.|.+|+++|++++|||||++++++.+++..|||
T Consensus        24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~-~-~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiV  101 (350)
T 4b9d_A           24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMS-S-KEREESRREVAVLANMKHPNIVQYRESFEENGSLYIV  101 (350)
T ss_dssp             CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSC-H-HHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred             cceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCC-H-HHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEE
Confidence            4688899999999999999964 56899999999764322 2 2456799999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      ||||++|+|.++|
T Consensus       102 mEy~~gg~L~~~i  114 (350)
T 4b9d_A          102 MDYCEGGDLFKRI  114 (350)
T ss_dssp             EECCTTCBHHHHH
T ss_pred             EeCCCCCcHHHHH
Confidence            9999999999987

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=99.59  E-value=1.4e-15  Score=153.99  Aligned_cols=88  Identities=30%  Similarity=0.424  Sum_probs=74.3

Q ss_pred             hcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      .+++...+.||+|+||+||+|++.+  .||||+++....  .....++|.+|+++|++++|||||+++|+|. ++..+||
T Consensus        35 ~~~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~--~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~-~~~~~iV  109 (307)
T 3omv_A           35 ASEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDP--TPEQFQAFRNEVAVLRKTRHVNILLFMGYMT-KDNLAIV  109 (307)
T ss_dssp             TTSCCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSC--CHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEE
T ss_pred             HHHeEEeeEEeeCCCcEEEEEEECC--cEEEEEEEecCC--CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEE-CCeEEEE
Confidence            3567888999999999999998753  699999975332  2224578999999999999999999999985 4568999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      ||||++|+|.++|
T Consensus       110 mEy~~gGsL~~~l  122 (307)
T 3omv_A          110 TQWCEGSSLYKHL  122 (307)
T ss_dssp             EECCSSCBHHHHH
T ss_pred             EEcCCCCCHHHHH
Confidence            9999999999987

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.58  E-value=1.7e-13  Score=145.86  Aligned_cols=328  Identities=9%  Similarity=0.029  Sum_probs=202.8

Q ss_pred             ccCCCCCCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcccccCccCCCcccc
Q 041300           66 TLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVC  145 (716)
Q Consensus        66 ~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~  145 (716)
                      .|.+.+|.++.+|+.++|.. .+..+...+|.++++|+.++|..+ ++.+...+|.++.+|+.+.+..+ +......+|.
T Consensus        61 sIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~  137 (394)
T 4fs7_A           61 SIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFK  137 (394)
T ss_dssp             EECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTT
T ss_pred             EhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeee
Confidence            46678899999999999974 477677788999999999999765 66566678888888988877654 4445556676


Q ss_pred             CCCCCceeecccccccCCCCccccCCcCCcEEEeecccccccccccccCCCCCceeeCCCC-----CcccCCCCccCEEE
Q 041300          146 QLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFL-----PLSVGNLTNLKSLG  220 (716)
Q Consensus       146 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~~-----~~~~~~l~~L~~L~  220 (716)
                      ++..++......  +.......|.++++|+.+.+.++. .......|.++..|+.+++...     ...+.++..|+.+.
T Consensus       138 ~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i~  214 (394)
T 4fs7_A          138 GCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLENME  214 (394)
T ss_dssp             TCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBCC
T ss_pred             cccccccccCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCCceEeCchhhccccccceee
Confidence            665444333322  233455678888888888887553 3344455666666666554321     12334444454444


Q ss_pred             eeCCcCcccCCCccccccccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCc
Q 041300          221 LMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGN  300 (716)
Q Consensus       221 l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~  300 (716)
                      +..+... .                        .+.+.....|+.+.+... +.......+.++..|+.+.+..+.. ..
T Consensus       215 ~~~~~~~-i------------------------~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~-~i  267 (394)
T 4fs7_A          215 FPNSLYY-L------------------------GDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL-RI  267 (394)
T ss_dssp             CCTTCCE-E------------------------CTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC-EE
T ss_pred             cCCCceE-e------------------------ehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcc-ee
Confidence            4333211 1                        111222234444444322 2223344556666677776665532 24


Q ss_pred             cchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCC
Q 041300          301 ISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKL  380 (716)
Q Consensus       301 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  380 (716)
                      ....|.....++.+....+.+   ....|..+.+|+.+.+..+ ++.....+|.++.+|+.+++..+ ++.....+|.++
T Consensus       268 ~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c  342 (394)
T 4fs7_A          268 GGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGC  342 (394)
T ss_dssp             CSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTC
T ss_pred             eccccccccccceeccCceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCC
Confidence            455666667777776665533   2345667777777777643 55455567777777777777643 555556677777


Q ss_pred             CCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEE
Q 041300          381 NSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYL  434 (716)
Q Consensus       381 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  434 (716)
                      .+|+.+.+..+ ++.+-..+|.++++|+.+++..+ +. ....+|.++++|+.+
T Consensus       343 ~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          343 TSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             TTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred             CCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence            78888887766 55555667778888888888654 32 234567777777654

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=99.58  E-value=9.4e-16  Score=154.89  Aligned_cols=91  Identities=18%  Similarity=0.272  Sum_probs=78.6

Q ss_pred             cCCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ++|...++||+|+||+||+|+ ..+++.||||++.+...... ...+.+.+|+++|++++|||||++++++.+++..|+|
T Consensus        32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~-~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yiv  110 (311)
T 4aw0_A           32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKE-NKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFG  110 (311)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHT-TCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCH-HHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence            469999999999999999996 45789999999975322111 1346799999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      ||||++|+|.++|
T Consensus       111 mEy~~gG~L~~~i  123 (311)
T 4aw0_A          111 LSYAKNGELLKYI  123 (311)
T ss_dssp             ECCCTTEEHHHHH
T ss_pred             EecCCCCCHHHHH
Confidence            9999999999987

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.58  E-value=1.2e-13  Score=146.94  Aligned_cols=81  Identities=7%  Similarity=-0.050  Sum_probs=52.5

Q ss_pred             ccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcccccCccCCCccccCCCCCceeecccccccCCCCcc
Q 041300           88 FFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPF  167 (716)
Q Consensus        88 i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~  167 (716)
                      ++.+...+|.++++|+.+.|..+ ++.+...+|.++++|+.+++..+ ++.+...+|.++.+|+.+.+..+ +.......
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a  135 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA  135 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred             EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee
Confidence            44555677888888888888643 66566667888888888888654 55455566777777777666543 33344444


Q ss_pred             ccCC
Q 041300          168 LGNL  171 (716)
Q Consensus       168 ~~~l  171 (716)
                      |.+.
T Consensus       136 F~~~  139 (394)
T 4fs7_A          136 FKGC  139 (394)
T ss_dssp             TTTC
T ss_pred             eecc
Confidence            5444

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=99.55  E-value=5.9e-15  Score=148.32  Aligned_cols=88  Identities=25%  Similarity=0.393  Sum_probs=73.2

Q ss_pred             CcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEe----CCeee
Q 041300          626 FDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSH----AQHSF  700 (716)
Q Consensus       626 ~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~----~~~~~  700 (716)
                      |...++||+|+||+||+|.. .++..||||++.......  ...+.|.+|++++++++|||||++++++.+    ++..|
T Consensus        28 ~~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~--~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~  105 (290)
T 3fpq_A           28 LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTK--SERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIV  105 (290)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCH--HHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEE
T ss_pred             EEeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCH--HHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEE
Confidence            35667899999999999965 468899999997643221  245679999999999999999999999865    34579


Q ss_pred             EEEcccCCCCHHhHh
Q 041300          701 LVYEFLERGSLAAIL  715 (716)
Q Consensus       701 lv~Ey~~~GsL~~~l  715 (716)
                      ||||||++|+|.++|
T Consensus       106 lvmEy~~gg~L~~~l  120 (290)
T 3fpq_A          106 LVTELMTSGTLKTYL  120 (290)
T ss_dssp             EEEECCCSCBHHHHH
T ss_pred             EEEeCCCCCCHHHHH
Confidence            999999999999987

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=99.54  E-value=5.1e-15  Score=151.91  Aligned_cols=88  Identities=32%  Similarity=0.478  Sum_probs=76.8

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ..|...+.||+|+||+||+|.. .+|+.||||++......    ..+.+.+|+++|++++|||||++++++.+++..|||
T Consensus        74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~----~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iv  149 (346)
T 4fih_A           74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQ----RRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVV  149 (346)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCS----SGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred             HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchh----HHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence            4588888999999999999965 46999999999753221    234588999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      ||||++|+|.+++
T Consensus       150 mEy~~gg~L~~~l  162 (346)
T 4fih_A          150 MEFLEGGALTDIV  162 (346)
T ss_dssp             ECCCTTEEHHHHH
T ss_pred             EeCCCCCcHHHHH
Confidence            9999999999876

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.54  E-value=1.4e-14  Score=135.45  Aligned_cols=16  Identities=6%  Similarity=0.208  Sum_probs=6.9

Q ss_pred             CcCCCCCCEEEccCCc
Q 041300          497 FEGMHGLSIIDISDNQ  512 (716)
Q Consensus       497 ~~~~~~L~~l~ls~N~  512 (716)
                      +..+++|+.||+++|.
T Consensus       136 ~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A          136 IYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             HHHCTTCSEETTEECC
T ss_pred             HHHCCccceeCCCcCC
Confidence            3344444444444444

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.53  E-value=1.4e-14  Score=135.50  Aligned_cols=135  Identities=21%  Similarity=0.154  Sum_probs=115.4

Q ss_pred             cccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCC
Q 041300          352 EIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKL  431 (716)
Q Consensus       352 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  431 (716)
                      .+..+.+|+.|++++|+++. +|......++|+.|++++|++++.  ..+..+++|++|++++|.+++..+..+..+++|
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   90 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             hcCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence            46678999999999999984 455333344999999999999975  679999999999999999997766667999999


Q ss_pred             CEEECcCCcCcccCCh--hhhCCCCCCEEECCCCcCccccch----hccCCCCCCEEECcCCcCcc
Q 041300          432 HYLGLSNNQFVLELPK--ELEKLVQLSELDASHNLFGGEIPF----QICSLKSLEKLNLSHNNLSG  491 (716)
Q Consensus       432 ~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~ls~N~l~~~~p~----~~~~l~~L~~L~ls~N~l~~  491 (716)
                      ++|++++|++. .+|.  .+..+++|+.|++++|.+.. +|.    .+..+++|+.|++++|.+..
T Consensus        91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            99999999996 4555  78899999999999999984 455    48899999999999998764

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=99.53  E-value=6.1e-15  Score=150.34  Aligned_cols=87  Identities=31%  Similarity=0.408  Sum_probs=69.7

Q ss_pred             cCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC----ee
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ----HS  699 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~----~~  699 (716)
                      +++...++||+|+||+||+|++ +|+.||||++...    .. ....+.+|+..+.+++|||||+++|+|.+++    ..
T Consensus         3 r~i~L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~----~~-~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~   76 (303)
T 3hmm_A            3 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSR----EE-RSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQL   76 (303)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEE-TTEEEEEEEECGG----GH-HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEE
T ss_pred             cEEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECcc----ch-hhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEE
Confidence            3567788999999999999988 5889999999652    11 1223445566667899999999999998754    57


Q ss_pred             eEEEcccCCCCHHhHhC
Q 041300          700 FLVYEFLERGSLAAILS  716 (716)
Q Consensus       700 ~lv~Ey~~~GsL~~~l~  716 (716)
                      |||||||++|+|.++|+
T Consensus        77 ~lV~Ey~~~gsL~~~l~   93 (303)
T 3hmm_A           77 WLVSDYHEHGSLFDYLN   93 (303)
T ss_dssp             EEEEECCTTCBHHHHHH
T ss_pred             EEEecCCCCCcHHHHHH
Confidence            99999999999999873

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=99.52  E-value=1.2e-14  Score=153.12  Aligned_cols=88  Identities=32%  Similarity=0.478  Sum_probs=77.3

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ..|...+.||+|+||+||+|.. .+|+.||||++......    ..+.+.+|+++|++++|||||++++++.+++..|||
T Consensus       151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~----~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iV  226 (423)
T 4fie_A          151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQ----RRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVV  226 (423)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCS----SGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred             HhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchh----HHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEE
Confidence            4588889999999999999965 46899999999754221    235688999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      ||||++|+|.+++
T Consensus       227 mEy~~gG~L~~~i  239 (423)
T 4fie_A          227 MEFLEGGALTDIV  239 (423)
T ss_dssp             EECCTTEEHHHHH
T ss_pred             EeCCCCCcHHHHH
Confidence            9999999999876

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=99.51  E-value=1.3e-14  Score=144.50  Aligned_cols=90  Identities=22%  Similarity=0.347  Sum_probs=72.4

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ++|...+.||+|+||+||+|.. .+|+.||||++.+....... ..+.+.+|++++++++|||||++++++.+++..|+|
T Consensus        13 g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~-~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv   91 (275)
T 3hyh_A           13 GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSD-MQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMV   91 (275)
T ss_dssp             -CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC-------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             eCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHH-HHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEE
Confidence            5799999999999999999974 46899999999764332222 346799999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      |||| +|+|.+++
T Consensus        92 mEy~-~g~L~~~l  103 (275)
T 3hyh_A           92 IEYA-GNELFDYI  103 (275)
T ss_dssp             EECC-CEEHHHHH
T ss_pred             EeCC-CCCHHHHH
Confidence            9999 68998876

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=99.51  E-value=2e-14  Score=145.71  Aligned_cols=88  Identities=22%  Similarity=0.446  Sum_probs=72.7

Q ss_pred             CCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC------
Q 041300          625 DFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ------  697 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~------  697 (716)
                      +|...+.||+|+||+||+|+. .+|+.||||+++...   .....+.+.+|+++|++++|||||++++++.+.+      
T Consensus         6 dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~---~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~   82 (299)
T 4g31_A            6 DFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPN---RELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQ   82 (299)
T ss_dssp             HEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECS---SHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC------
T ss_pred             hCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccC---CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCcccccc
Confidence            588889999999999999964 468999999997532   1224567999999999999999999999987644      


Q ss_pred             ------eeeEEEcccCCCCHHhHh
Q 041300          698 ------HSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       698 ------~~~lv~Ey~~~GsL~~~l  715 (716)
                            ..|+|||||++|+|.+++
T Consensus        83 ~~~~~~~l~ivmE~~~gg~L~~~l  106 (299)
T 4g31_A           83 PSSPKVYLYIQMQLCRKENLKDWM  106 (299)
T ss_dssp             ----CEEEEEEEECCCSCCHHHHH
T ss_pred             ccCCCcEEEEEEecCCCCcHHHHH
Confidence                  368999999999999986

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.50  E-value=2.3e-16  Score=150.85  Aligned_cols=151  Identities=23%  Similarity=0.246  Sum_probs=82.5

Q ss_pred             CCCCEEEccCCccccccCc------ccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCC
Q 041300          357 SQLQALDLSLNHIVGEIPK------ELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLK  430 (716)
Q Consensus       357 ~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  430 (716)
                      ..++.++++.+.+.+..|.      .+..+++|+.|++++|++++ +| .+..+++|+.|++++|.++ .+|..+..+++
T Consensus        18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~   94 (198)
T 1ds9_A           18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADT   94 (198)
T ss_dssp             TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred             ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCc
Confidence            3444444444444444333      45555555555555555553 33 4555555555566555555 34444555556


Q ss_pred             CCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccc-hhccCCCCCCEEECcCCcCcccCCcC----------CcC
Q 041300          431 LHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIP-FQICSLKSLEKLNLSHNNLSGLIPNC----------FEG  499 (716)
Q Consensus       431 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p-~~~~~l~~L~~L~ls~N~l~~~~~~~----------~~~  499 (716)
                      |++|++++|++++ +| .+..+++|++|++++|.+++..+ ..+..+++|+.|++++|.+++.+|..          +..
T Consensus        95 L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~  172 (198)
T 1ds9_A           95 LEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKR  172 (198)
T ss_dssp             CSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHH
T ss_pred             CCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHh
Confidence            6666666666653 22 45555666666666666654322 34556666666666666665554432          556


Q ss_pred             CCCCCEEEccCCccc
Q 041300          500 MHGLSIIDISDNQLQ  514 (716)
Q Consensus       500 ~~~L~~l~ls~N~l~  514 (716)
                      +++|+.||  +|+++
T Consensus       173 l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          173 LPNLKKLD--GMPVD  185 (198)
T ss_dssp             CSSCSEEC--CGGGT
T ss_pred             CCCcEEEC--CcccC
Confidence            66777665  55544

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=99.50  E-value=1.3e-14  Score=148.50  Aligned_cols=84  Identities=26%  Similarity=0.347  Sum_probs=73.6

Q ss_pred             hcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL  701 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l  701 (716)
                      ...|...++||+|+||+||+|+. .+|+.||||+++....         +.+|++++++++|||||++++++.+++..||
T Consensus        57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~---------~~~E~~il~~l~HpnIV~l~~~~~~~~~~~i  127 (336)
T 4g3f_A           57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF---------RVEELVACAGLSSPRIVPLYGAVREGPWVNI  127 (336)
T ss_dssp             TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC---------CTHHHHTTTTCCCTTBCCEEEEEEETTEEEE
T ss_pred             hhheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh---------HHHHHHHHHhCCCCCCCcEEEEEEECCEEEE
Confidence            34677888999999999999964 4689999999975321         2469999999999999999999999999999


Q ss_pred             EEcccCCCCHHhHh
Q 041300          702 VYEFLERGSLAAIL  715 (716)
Q Consensus       702 v~Ey~~~GsL~~~l  715 (716)
                      |||||++|+|.++|
T Consensus       128 vmEy~~gg~L~~~l  141 (336)
T 4g3f_A          128 FMELLEGGSLGQLI  141 (336)
T ss_dssp             EECCCTTCBHHHHH
T ss_pred             EEeccCCCcHHHHH
Confidence            99999999999987

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=99.49  E-value=1.6e-14  Score=149.61  Aligned_cols=97  Identities=23%  Similarity=0.395  Sum_probs=79.2

Q ss_pred             HHHHHhhcCCcccccccCCCceEEEEEEcCC------CCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCC-CCcccc
Q 041300          617 DEIVRETNDFDAEYCIGNGGHGSVYRAELPS------GEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRH-RNIVKF  689 (716)
Q Consensus       617 ~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~------~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H-~niv~l  689 (716)
                      ++++...++|...+.||+|+||+||+|.+..      ++.||||++.....   ....++|.+|+++|.+++| ||||++
T Consensus        57 ~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~---~~~~~~~~~E~~il~~l~hhpnIV~l  133 (353)
T 4ase_A           57 SKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGAT---HSEHRALMSELKILIHIGHHLNVVNL  133 (353)
T ss_dssp             HHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCC---HHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred             cccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccC---hHHHHHHHHHHHHHHHcCCCCcEEEE
Confidence            4555666789999999999999999997532      35799999976322   1245679999999999965 899999


Q ss_pred             ceEEEeC-CeeeEEEcccCCCCHHhHhC
Q 041300          690 YGFCSHA-QHSFLVYEFLERGSLAAILS  716 (716)
Q Consensus       690 ~g~~~~~-~~~~lv~Ey~~~GsL~~~l~  716 (716)
                      +|+|.+. +..+||||||++|+|.++|+
T Consensus       134 ~g~~~~~~~~~~iV~Ey~~~G~L~~~L~  161 (353)
T 4ase_A          134 LGACTKPGGPLMVIVEFCKFGNLSTYLR  161 (353)
T ss_dssp             EEEECCTTSCCEEEEECCTTEEHHHHHH
T ss_pred             EEEEEecCCEEEEEEEcCCCCCHHHHHH
Confidence            9999765 56899999999999999873

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=99.49  E-value=5.5e-15  Score=149.32  Aligned_cols=90  Identities=23%  Similarity=0.336  Sum_probs=71.5

Q ss_pred             cCCcccccccCCCceEEEEEEc----CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCee
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL----PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHS  699 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~----~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~  699 (716)
                      ++|...+.||+|+||+||+|+.    ..++.||||++.+......  ....+.+|+++|++++|||||++++++.+++..
T Consensus        24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~--~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  101 (304)
T 3ubd_A           24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVR--DRVRTKMERDILVEVNHPFIVKLHYAFQTEGKL  101 (304)
T ss_dssp             GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEE--ECC------CCCCCCCCTTEECEEEEEEETTEE
T ss_pred             cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChH--HHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEE
Confidence            4689999999999999999964    2467999999976432211  234688999999999999999999999999999


Q ss_pred             eEEEcccCCCCHHhHh
Q 041300          700 FLVYEFLERGSLAAIL  715 (716)
Q Consensus       700 ~lv~Ey~~~GsL~~~l  715 (716)
                      |+|||||++|+|.++|
T Consensus       102 ~ivmEy~~gg~L~~~l  117 (304)
T 3ubd_A          102 YLILDFLRGGDLFTRL  117 (304)
T ss_dssp             EEEECCCTTCEEHHHH
T ss_pred             EEEEEcCCCCCHHHHH
Confidence            9999999999999886

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.48  E-value=2.8e-16  Score=150.21  Aligned_cols=132  Identities=23%  Similarity=0.236  Sum_probs=75.1

Q ss_pred             cccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCC
Q 041300          352 EIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKL  431 (716)
Q Consensus       352 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  431 (716)
                      .+..+++|++|++++|.+++ +| .+..+++|+.|++++|+++ .+|..+..+++|++|++++|.+++ +| .+..+++|
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L  117 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL  117 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence            55555555666665555553 34 5555556666666666655 344444445566666666666654 23 45556666


Q ss_pred             CEEECcCCcCcccCC-hhhhCCCCCCEEECCCCcCccccch----------hccCCCCCCEEECcCCcCc
Q 041300          432 HYLGLSNNQFVLELP-KELEKLVQLSELDASHNLFGGEIPF----------QICSLKSLEKLNLSHNNLS  490 (716)
Q Consensus       432 ~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~ls~N~l~~~~p~----------~~~~l~~L~~L~ls~N~l~  490 (716)
                      +.|++++|+++...+ ..+..+++|++|++++|.+.+..|.          .+..+++|+.||  +|.++
T Consensus       118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            666666666653222 3455666666666666666555443          256677777765  55554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.47  E-value=1.9e-13  Score=126.65  Aligned_cols=108  Identities=23%  Similarity=0.290  Sum_probs=74.0

Q ss_pred             CEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCC
Q 041300          408 EYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHN  487 (716)
Q Consensus       408 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N  487 (716)
                      +.+++++|.++. +|..+  .++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|+.|+|++|
T Consensus        12 ~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           12 TTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            456666666653 34333  256666666666666666666667777777777777777666666677777777777777


Q ss_pred             cCcccCCcCCcCCCCCCEEEccCCcccccCC
Q 041300          488 NLSGLIPNCFEGMHGLSIIDISDNQLQGPVP  518 (716)
Q Consensus       488 ~l~~~~~~~~~~~~~L~~l~ls~N~l~~~~p  518 (716)
                      +|++..+..|..+++|+.|++++|++.+..+
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            7777766777777788888888888776654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.47  E-value=1.6e-13  Score=127.22  Aligned_cols=103  Identities=23%  Similarity=0.237  Sum_probs=64.6

Q ss_pred             EEEcCCCCCccccCCCCCCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcccc
Q 041300           55 NISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFN  134 (716)
Q Consensus        55 ~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N  134 (716)
                      .++++++++.. ++. .+  .+.|++|+|++|.|.++.|..|.++++|++|+|++|+|++..+..|..+++|++|+|++|
T Consensus        13 ~l~~s~n~l~~-ip~-~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           13 TVDCSGKSLAS-VPT-GI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             EEECTTSCCSS-CCS-CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEEeCCCCcCc-cCc-cC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            45566666652 322 12  256677777777776666666667777777777777776555555666666666666666


Q ss_pred             cCccCCCccccCCCCCceeeccccccc
Q 041300          135 ELDGSIPPEVCQLSSIEELFLYSNHLN  161 (716)
Q Consensus       135 ~l~~~~~~~~~~l~~L~~L~L~~N~l~  161 (716)
                      .|++..+..|..+++|++|+|++|.++
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            666555555666666666666666655

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.45  E-value=3.1e-13  Score=125.68  Aligned_cols=104  Identities=22%  Similarity=0.256  Sum_probs=69.0

Q ss_pred             EEEEcCCCCCccccCCCCCCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEccc
Q 041300           54 TNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQF  133 (716)
Q Consensus        54 ~~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~  133 (716)
                      +.++++++++. .++. .+  .++|++|+|++|.|.+..|..|.++++|++|+|++|+|++..+..|..+++|++|+|++
T Consensus        15 ~~l~~~~n~l~-~iP~-~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPA-GI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSCCS-SCCS-CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCCC-ccCC-Cc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            45777777774 4432 22  26677777777777776677777777777777777777765555566777777777777


Q ss_pred             ccCccCCCccccCCCCCceeeccccccc
Q 041300          134 NELDGSIPPEVCQLSSIEELFLYSNHLN  161 (716)
Q Consensus       134 N~l~~~~~~~~~~l~~L~~L~L~~N~l~  161 (716)
                      |.|++..+..|..+++|++|+|++|.+.
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcc
Confidence            7776555555666666666666666665

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.44  E-value=4.6e-13  Score=124.55  Aligned_cols=108  Identities=22%  Similarity=0.279  Sum_probs=68.2

Q ss_pred             CEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCC
Q 041300          408 EYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHN  487 (716)
Q Consensus       408 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N  487 (716)
                      +.+++++|.+. .+|..+.  ++|+.|+|++|++++..|..|..+++|++|+|++|++++..+..|..+++|+.|+|++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            45555555554 3343332  45666666666666555666666666666666666666555555666777777777777


Q ss_pred             cCcccCCcCCcCCCCCCEEEccCCcccccCC
Q 041300          488 NLSGLIPNCFEGMHGLSIIDISDNQLQGPVP  518 (716)
Q Consensus       488 ~l~~~~~~~~~~~~~L~~l~ls~N~l~~~~p  518 (716)
                      +|+++.+..|..+++|+.|++++|++.+..+
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            7776666667777777777777777765543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.38  E-value=5.8e-11  Score=126.19  Aligned_cols=329  Identities=11%  Similarity=0.097  Sum_probs=209.0

Q ss_pred             ccCCCCCCCCC-CCcEEECCCCCccccCcccccCCCCCCEEECcCCc---CcccCCccccCCCCCCEEEcccccCccCCC
Q 041300           66 TLRDFSFSSFP-QLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQ---LSGKIPAEVGLLTHLKVLSFQFNELDGSIP  141 (716)
Q Consensus        66 ~~~~~~f~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~---l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~  141 (716)
                      .|.+.+|.+.. .|+.+.+..+ ++.+...+|.++++|+.+.+..|.   ++.+...+|..+.+|+.+.+..+ ++.+..
T Consensus        53 ~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~  130 (394)
T 4gt6_A           53 KIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDS  130 (394)
T ss_dssp             EECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECT
T ss_pred             EcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehh
Confidence            46677888774 5888888754 666777889999999999888764   66555677888888888877654 454666


Q ss_pred             ccccCCCCCceeecccccccCCCCccccCCcCCcEEEeecccccccccccccCCCCCceeeCCC-----CCcccCCCCcc
Q 041300          142 PEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSF-----LPLSVGNLTNL  216 (716)
Q Consensus       142 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~-----~~~~~~~l~~L  216 (716)
                      .+|..+.+|+.+.+..+ ++.+....|..+.+|+.+.+..+ ++......|.. ..|+.+.+..     -...+..+.++
T Consensus       131 ~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~i~~~af~~c~~l  207 (394)
T 4gt6_A          131 EAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTRIGTNAFSECFAL  207 (394)
T ss_dssp             TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCEECTTTTTTCTTC
T ss_pred             hhhhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccccccchhhhcccc
Confidence            77888888888888654 44466677888888888888654 33333444433 3455555432     12234555666


Q ss_pred             CEEEeeCCcCcccCCCccccccccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEccCCc
Q 041300          217 KSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNN  296 (716)
Q Consensus       217 ~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~  296 (716)
                      +......+.........+.........+          ..+.....+..+.+. +.+.......|.++..|+.+.+..+.
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~  276 (394)
T 4gt6_A          208 STITSDSESYPAIDNVLYEKSANGDYAL----------IRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDSV  276 (394)
T ss_dssp             CEEEECCSSSCBSSSCEEEECTTSCEEE----------EECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTTC
T ss_pred             ceecccccccccccceeecccccccccc----------cccccccccceEEcC-CcceEcccceeeecccccEEeccccc
Confidence            6665554433321111111100000000          001111223333332 22333445678888899998886543


Q ss_pred             CCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcc
Q 041300          297 LTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKE  376 (716)
Q Consensus       297 l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  376 (716)
                       ......+|..++.|+.+.+. +.++......|.+|.+|+.+++..+ ++.....+|.++.+|+.+.+..+ ++.....+
T Consensus       277 -~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~a  352 (394)
T 4gt6_A          277 -VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESA  352 (394)
T ss_dssp             -CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGG
T ss_pred             -ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhH
Confidence             34566778888999999996 4566677788999999999999754 66566778999999999999654 66566678


Q ss_pred             cCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcC
Q 041300          377 LGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKF  417 (716)
Q Consensus       377 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  417 (716)
                      |.++.+|+.+++.++....   ..+....+|+.+.+..|.+
T Consensus       353 F~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          353 FSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             GTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred             hhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence            9999999999999886542   4567778888888877655

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.38  E-value=8.5e-11  Score=124.92  Aligned_cols=93  Identities=10%  Similarity=0.006  Sum_probs=73.4

Q ss_pred             ccccCcccccCCC-CCCEEECcCCcCcccCCccccCCCCCCEEEccccc---CccCCCccccCCCCCceeecccccccCC
Q 041300           88 FFGTIPSQIGNLT-KLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNE---LDGSIPPEVCQLSSIEELFLYSNHLNGS  163 (716)
Q Consensus        88 i~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~---l~~~~~~~~~~l~~L~~L~L~~N~l~~~  163 (716)
                      ++.+...+|.++. .|+.+.+..+ ++.+...+|.++++|+.+.+..|.   ++.+...+|.++.+|+.+.+..+ ++.+
T Consensus        51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I  128 (394)
T 4gt6_A           51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEI  128 (394)
T ss_dssp             EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEE
T ss_pred             eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-ccee
Confidence            4455667888874 6999999864 776778899999999999998774   66566778999999999888765 5556


Q ss_pred             CCccccCCcCCcEEEeecc
Q 041300          164 LPPFLGNLSNIVRLYINNN  182 (716)
Q Consensus       164 ~p~~~~~l~~L~~L~L~~n  182 (716)
                      ....|.++.+|+.+.+..+
T Consensus       129 ~~~aF~~c~~L~~i~lp~~  147 (394)
T 4gt6_A          129 DSEAFHHCEELDTVTIPEG  147 (394)
T ss_dssp             CTTTTTTCTTCCEEECCTT
T ss_pred             hhhhhhhhcccccccccce
Confidence            7778888899998888644

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=99.36  E-value=6.7e-13  Score=139.98  Aligned_cols=90  Identities=26%  Similarity=0.468  Sum_probs=74.1

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC------
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA------  696 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~------  696 (716)
                      ++|...+.||+|+||+||+|.. .+|+.||||+++....  .....+.+.+|+++|++++|||||++++++...      
T Consensus        54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~--~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~  131 (398)
T 4b99_A           54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFD--VVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEF  131 (398)
T ss_dssp             SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTS--SHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTC
T ss_pred             CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECcccc--chHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccC
Confidence            4688899999999999999964 5799999999976432  222456789999999999999999999998643      


Q ss_pred             CeeeEEEcccCCCCHHhHhC
Q 041300          697 QHSFLVYEFLERGSLAAILS  716 (716)
Q Consensus       697 ~~~~lv~Ey~~~GsL~~~l~  716 (716)
                      +..|||||||+ |+|.++++
T Consensus       132 ~~~~ivmE~~~-g~L~~~i~  150 (398)
T 4b99_A          132 KSVYVVLDLME-SDLHQIIH  150 (398)
T ss_dssp             CCEEEEEECCS-EEHHHHHT
T ss_pred             CEEEEEEeCCC-CCHHHHHH
Confidence            56799999996 67988763

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.36  E-value=1e-12  Score=145.61  Aligned_cols=88  Identities=23%  Similarity=0.425  Sum_probs=77.8

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ++|...+.||+|+||+||+|.. .+|+.||||++....   . ...+.+.+|+++|+.++|||||++++++.+++..|||
T Consensus       157 ~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~---~-~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv  232 (573)
T 3uto_A          157 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPH---E-SDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMI  232 (573)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS---H-HHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEE
T ss_pred             cccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccc---h-hhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEE
Confidence            4688999999999999999964 568999999997532   1 2456789999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      ||||++|+|.++|
T Consensus       233 ~E~~~gg~L~~~i  245 (573)
T 3uto_A          233 YEFMSGGELFEKV  245 (573)
T ss_dssp             EECCCCCBHHHHH
T ss_pred             EeecCCCcHHHHH
Confidence            9999999999887

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=99.34  E-value=1.3e-12  Score=136.23  Aligned_cols=92  Identities=26%  Similarity=0.331  Sum_probs=77.6

Q ss_pred             HHHhhcCCcccccccCCCceEEEEEEc----CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEE
Q 041300          619 IVRETNDFDAEYCIGNGGHGSVYRAEL----PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFC  693 (716)
Q Consensus       619 ~~~~~~~~~~~~~ig~g~~g~v~~~~~----~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~  693 (716)
                      +....+.|...+.||+|+||+||+|+.    ..++.||||++.+..      ....+.+|++++..+ +|||||++++++
T Consensus        16 ~p~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~------~~~~~~~E~~~l~~~~~h~nIv~l~~~~   89 (361)
T 4f9c_A           16 VPQLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTS------HPIRIAAELQCLTVAGGQDNVMGVKYCF   89 (361)
T ss_dssp             SGGGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTS------CHHHHHHHHHHHHHTCSBTTBCCCSEEE
T ss_pred             cCCccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEcccc------CHHHHHHHHHHHHHhcCCCCCceEEEEE
Confidence            334456799999999999999999953    246789999986531      235688999999998 699999999999


Q ss_pred             EeCCeeeEEEcccCCCCHHhHhC
Q 041300          694 SHAQHSFLVYEFLERGSLAAILS  716 (716)
Q Consensus       694 ~~~~~~~lv~Ey~~~GsL~~~l~  716 (716)
                      .+.+..|+|||||++|+|.++++
T Consensus        90 ~~~~~~~lvmE~~~g~~L~~~~~  112 (361)
T 4f9c_A           90 RKNDHVVIAMPYLEHESFLDILN  112 (361)
T ss_dssp             EETTEEEEEEECCCCCCHHHHHT
T ss_pred             EECCEEEEEEeCCCcccHHHHHc
Confidence            99999999999999999998863

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.33  E-value=8.7e-14  Score=145.96  Aligned_cols=88  Identities=27%  Similarity=0.263  Sum_probs=42.8

Q ss_pred             CCCCCEEEccCCcCCcc----CchhhcCcCCCCEEECcCCcCccc----CChhhhCCCCCCEEECCCCcCcccc----ch
Q 041300          404 LIELEYLDFSANKFNNS----VPESLGNLLKLHYLGLSNNQFVLE----LPKELEKLVQLSELDASHNLFGGEI----PF  471 (716)
Q Consensus       404 l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~ls~N~l~~~~----p~  471 (716)
                      .++|+.|+|++|.|++.    ++..+..+++|++|+|++|.+...    ++..+...++|++|+|++|.++...    ..
T Consensus       154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~  233 (372)
T 3un9_A          154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR  233 (372)
T ss_dssp             TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence            34555555555555432    222334455555555555555432    1233444455566666666554322    22


Q ss_pred             hccCCCCCCEEECcCCcCcc
Q 041300          472 QICSLKSLEKLNLSHNNLSG  491 (716)
Q Consensus       472 ~~~~l~~L~~L~ls~N~l~~  491 (716)
                      .+...++|++|+|++|.|+.
T Consensus       234 ~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          234 AAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHHHCSSCCEEECTTSSCCH
T ss_pred             HHHhCCCCCEEeccCCCCCH
Confidence            23334556666666665553

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.32  E-value=7.9e-14  Score=146.31  Aligned_cols=143  Identities=19%  Similarity=0.146  Sum_probs=86.6

Q ss_pred             CCCCEEEcccCcCcccCcccc-cCCCCCCEEEccCCccccccCccc-----CCCCCCcEEEccCCccccc----CCcccC
Q 041300          333 PKLGTLNVSMNNITGGIPREI-GNMSQLQALDLSLNHIVGEIPKEL-----GKLNSLTKLILRGNQLTGR----LPTEIG  402 (716)
Q Consensus       333 ~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~N~l~~~----~~~~~~  402 (716)
                      ++|+.|+|++|.++......+ ..+++|+.|+|++|.+++.....+     ...++|+.|+|++|.++..    ++..+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            455555555555543222221 233456666666666654333332     2345677777777776532    233345


Q ss_pred             CCCCCCEEEccCCcCCccC----chhhcCcCCCCEEECcCCcCccc----CChhhhCCCCCCEEECCCCcCccccchhcc
Q 041300          403 SLIELEYLDFSANKFNNSV----PESLGNLLKLHYLGLSNNQFVLE----LPKELEKLVQLSELDASHNLFGGEIPFQIC  474 (716)
Q Consensus       403 ~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~  474 (716)
                      .+++|++|+|++|.|.+..    +..+...++|+.|+|++|.++..    +...+...++|++|||++|.|+......+.
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~  260 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLR  260 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence            6677888888888776432    44556677888888888888643    334455668899999999988765555444


Q ss_pred             C
Q 041300          475 S  475 (716)
Q Consensus       475 ~  475 (716)
                      .
T Consensus       261 ~  261 (372)
T 3un9_A          261 D  261 (372)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=99.31  E-value=5.4e-12  Score=129.37  Aligned_cols=103  Identities=30%  Similarity=0.537  Sum_probs=88.3

Q ss_pred             ccchHHHHHHhhcCCccc------ccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCC
Q 041300          612 GKLVYDEIVRETNDFDAE------YCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRN  685 (716)
Q Consensus       612 ~~~~~~~~~~~~~~~~~~------~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~n  685 (716)
                      ..+++.++..++.+|+..      +.||+|+||.||+|.. +++.||||++............+.|.+|++++++++|||
T Consensus        13 ~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~   91 (307)
T 2nru_A           13 HSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHEN   91 (307)
T ss_dssp             EECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCTT
T ss_pred             CcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCCC
Confidence            356788999999998887      8899999999999987 678999999875432222224567999999999999999


Q ss_pred             ccccceEEEeCCeeeEEEcccCCCCHHhHh
Q 041300          686 IVKFYGFCSHAQHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       686 iv~l~g~~~~~~~~~lv~Ey~~~GsL~~~l  715 (716)
                      |+++++++.+.+..++||||+++|+|.+++
T Consensus        92 i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l  121 (307)
T 2nru_A           92 LVELLGFSSDGDDLCLVYVYMPNGSLLDRL  121 (307)
T ss_dssp             BCCEEEEECSSSSCEEEEECCTTCBHHHHH
T ss_pred             eEEEEEEEecCCceEEEEEecCCCcHHHHH
Confidence            999999999999999999999999999876

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=99.31  E-value=1.6e-12  Score=143.37  Aligned_cols=92  Identities=20%  Similarity=0.197  Sum_probs=74.0

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccc--hhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeee
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQ--IADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSF  700 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~--~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~  700 (716)
                      ++|...++||+|+||+||+|+. .+|+.||||++.+......  .........++++++.++|||||++++++.+++..|
T Consensus       189 ddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~ly  268 (689)
T 3v5w_A          189 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLS  268 (689)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEE
T ss_pred             HHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEEE
Confidence            5799999999999999999964 4689999999975321111  111222344567788999999999999999999999


Q ss_pred             EEEcccCCCCHHhHh
Q 041300          701 LVYEFLERGSLAAIL  715 (716)
Q Consensus       701 lv~Ey~~~GsL~~~l  715 (716)
                      +|||||+||+|.++|
T Consensus       269 lVmEy~~GGdL~~~l  283 (689)
T 3v5w_A          269 FILDLMNGGDLHYHL  283 (689)
T ss_dssp             EEECCCCSCBHHHHH
T ss_pred             EEEecCCCCcHHHHH
Confidence            999999999999887

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=99.31  E-value=1.5e-12  Score=134.85  Aligned_cols=101  Identities=31%  Similarity=0.636  Sum_probs=87.5

Q ss_pred             ccchHHHHHHhhcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccce
Q 041300          612 GKLVYDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG  691 (716)
Q Consensus       612 ~~~~~~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g  691 (716)
                      ..+++.++....++|...+.||+|+||.||+|...+++.||||++.......   ....|.+|++++++++|||||++++
T Consensus        18 ~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~---~~~~~~~e~~~l~~l~h~~iv~~~~   94 (326)
T 3uim_A           18 KRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQG---GELQFQTEVEMISMAVHRNLLRLRG   94 (326)
T ss_dssp             EECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC--------CCCHHHHHHHGGGTCCCTTBCCCCE
T ss_pred             ceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCch---HHHHHHHHHHHHHhccCCCccceEE
Confidence            4567889999999999999999999999999988789999999997632211   2236899999999999999999999


Q ss_pred             EEEeCCeeeEEEcccCCCCHHhHh
Q 041300          692 FCSHAQHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       692 ~~~~~~~~~lv~Ey~~~GsL~~~l  715 (716)
                      ++..++..++|||||++|+|.+++
T Consensus        95 ~~~~~~~~~lv~e~~~~~~L~~~l  118 (326)
T 3uim_A           95 FCMTPTERLLVYPYMANGSVASCL  118 (326)
T ss_dssp             EECCSSCCEEEEECCTTCBHHHHH
T ss_pred             EEecCCceEEEEEeccCCCHHHHH
Confidence            999999999999999999999876

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=99.30  E-value=1.5e-12  Score=134.58  Aligned_cols=97  Identities=33%  Similarity=0.617  Sum_probs=84.3

Q ss_pred             hHHHHHHhhcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEE
Q 041300          615 VYDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCS  694 (716)
Q Consensus       615 ~~~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~  694 (716)
                      ++.++...+.+|...+.||+|+||.||+|...+++.||||++.....    ...+.|.+|++++++++|||||++++++.
T Consensus        30 ~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~----~~~~~~~~E~~~l~~l~h~~iv~~~~~~~  105 (321)
T 2qkw_B           30 PLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESS----QGIEEFETEIETLSFCRHPHLVSLIGFCD  105 (321)
T ss_dssp             CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCS----SHHHHHHHHHHGGGSCCCTTBCCEEEECC
T ss_pred             cHHHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccCh----HHHHHHHHHHHHHHhCCCCCEeeEEEEEc
Confidence            33445566789999999999999999999988899999999875321    14567999999999999999999999999


Q ss_pred             eCCeeeEEEcccCCCCHHhHh
Q 041300          695 HAQHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       695 ~~~~~~lv~Ey~~~GsL~~~l  715 (716)
                      ..+..++||||+++|+|.+++
T Consensus       106 ~~~~~~lv~e~~~~~~L~~~l  126 (321)
T 2qkw_B          106 ERNEMILIYKYMENGNLKRHL  126 (321)
T ss_dssp             CTTCCEEEEECCTTCBTGGGS
T ss_pred             CCCeEEEEEEcCCCCcHHHHH
Confidence            999999999999999999886

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=99.28  E-value=6.1e-12  Score=127.39  Aligned_cols=92  Identities=14%  Similarity=0.129  Sum_probs=79.4

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      +.|...+.||+|+||.||+|... +++.||||++........ ...+.|.+|++.+.+++|||||++++++..++..|+|
T Consensus        31 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~-~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv  109 (286)
T 3uqc_A           31 GRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPD-DVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVV  109 (286)
T ss_dssp             TTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCH-HHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             CcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCH-HHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEE
Confidence            46888999999999999999754 488999999986433222 2457799999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHhC
Q 041300          703 YEFLERGSLAAILS  716 (716)
Q Consensus       703 ~Ey~~~GsL~~~l~  716 (716)
                      |||+++|+|.++++
T Consensus       110 ~e~~~g~~L~~~l~  123 (286)
T 3uqc_A          110 AEWIRGGSLQEVAD  123 (286)
T ss_dssp             EECCCEEEHHHHHT
T ss_pred             EEecCCCCHHHHHh
Confidence            99999999999863

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=99.28  E-value=8.5e-12  Score=128.70  Aligned_cols=101  Identities=27%  Similarity=0.386  Sum_probs=83.1

Q ss_pred             ccchHHHHHHhhcC----------CcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhc
Q 041300          612 GKLVYDEIVRETND----------FDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTE  680 (716)
Q Consensus       612 ~~~~~~~~~~~~~~----------~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~  680 (716)
                      ..++++++..+++.          |...+.||+|+||.||+|... +|+.||||++.....    ...+.+.+|+.++++
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~----~~~~~~~~E~~~l~~   98 (321)
T 2c30_A           23 GVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQ----QRRELLFNEVVIMRD   98 (321)
T ss_dssp             --CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC----CSHHHHHHHHHHHTT
T ss_pred             CcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccch----hHHHHHHHHHHHHHh
Confidence            34566776666543          666778999999999999765 689999999975321    134678999999999


Q ss_pred             CCCCCccccceEEEeCCeeeEEEcccCCCCHHhHhC
Q 041300          681 IRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAILS  716 (716)
Q Consensus       681 l~H~niv~l~g~~~~~~~~~lv~Ey~~~GsL~~~l~  716 (716)
                      ++|||||++++++...+..++||||+++|+|.++++
T Consensus        99 l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~  134 (321)
T 2c30_A           99 YQHFNVVEMYKSYLVGEELWVLMEFLQGGALTDIVS  134 (321)
T ss_dssp             CCCTTBCCEEEEEEETTEEEEEECCCCSCBHHHHHT
T ss_pred             CCCCCcceEEEEEEECCEEEEEEecCCCCCHHHHHH
Confidence            999999999999999999999999999999998763

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.27  E-value=9e-12  Score=130.15  Aligned_cols=107  Identities=21%  Similarity=0.275  Sum_probs=74.8

Q ss_pred             cceeeeeeCCCCCEEEEEcCCC-CCccccCCCCCCCCCCCcEEECCC-CCccccCcccccCCCCCCEEECcCCcCcccCC
Q 041300           40 CAWYGISCNDAGRVTNISLRNT-GLSGTLRDFSFSSFPQLVHLDLSL-NGFFGTIPSQIGNLTKLSYISLDSNQLSGKIP  117 (716)
Q Consensus        40 c~w~gv~c~~~~~v~~l~l~~~-~l~~~~~~~~f~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  117 (716)
                      |.|..|.|.           ++ ++. .++.  +..+++|++|+|++ |.|.++.+..|.++++|++|+|++|+|++..|
T Consensus         8 C~~~~v~~~-----------~~n~l~-~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~   73 (347)
T 2ifg_A            8 HGSSGLRCT-----------RDGALD-SLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP   73 (347)
T ss_dssp             SSSSCEECC-----------SSCCCT-TTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECT
T ss_pred             ccCCEEEcC-----------CCCCCC-ccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCH
Confidence            666666664           33 454 3433  77777788888875 77777777777788888888888888877777


Q ss_pred             ccccCCCCCCEEEcccccCccCCCccccCCCCCceeeccccccc
Q 041300          118 AEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLN  161 (716)
Q Consensus       118 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  161 (716)
                      ..|+.|++|++|+|++|.|++..+..|..+. |+.|+|.+|.+.
T Consensus        74 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           74 DAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             TGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             HHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            7777777777777777777765555555554 666666666664

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=99.26  E-value=9.9e-12  Score=128.42  Aligned_cols=91  Identities=22%  Similarity=0.355  Sum_probs=79.0

Q ss_pred             hcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL  701 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l  701 (716)
                      .++|...+.||+|+||.||+|.. .+|+.||||++......  ....+.+.+|+++++.++|||||++++++...+..|+
T Consensus        14 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~--~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~l   91 (328)
T 3fe3_A           14 IGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLN--PTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYL   91 (328)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSC--HHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred             cCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCC--HHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEE
Confidence            45789999999999999999964 57899999999764321  1245678999999999999999999999999999999


Q ss_pred             EEcccCCCCHHhHh
Q 041300          702 VYEFLERGSLAAIL  715 (716)
Q Consensus       702 v~Ey~~~GsL~~~l  715 (716)
                      |||||++|+|.+++
T Consensus        92 v~e~~~~~~L~~~l  105 (328)
T 3fe3_A           92 IMEYASGGEVFDYL  105 (328)
T ss_dssp             EECCCTTCBHHHHH
T ss_pred             EEECCCCCcHHHHH
Confidence            99999999999876

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=99.25  E-value=5.1e-12  Score=133.20  Aligned_cols=89  Identities=25%  Similarity=0.492  Sum_probs=76.7

Q ss_pred             cCCcccccccCCCceEEEEEEcC----CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCee
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP----SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHS  699 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~----~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~  699 (716)
                      .+|...++||+|+||.||+|+..    ++..||||+++...  . ....++|.+|++++++++|||||+++|++.+++..
T Consensus        45 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~--~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~  121 (373)
T 2qol_A           45 TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGY--T-EKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPV  121 (373)
T ss_dssp             GGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTC--C-HHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSC
T ss_pred             hhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCcc--C-HHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCce
Confidence            47889999999999999999754    46789999997532  1 22456899999999999999999999999998999


Q ss_pred             eEEEcccCCCCHHhHh
Q 041300          700 FLVYEFLERGSLAAIL  715 (716)
Q Consensus       700 ~lv~Ey~~~GsL~~~l  715 (716)
                      ++|||||++|+|.+++
T Consensus       122 ~lv~e~~~~~sL~~~l  137 (373)
T 2qol_A          122 MIVTEYMENGSLDSFL  137 (373)
T ss_dssp             EEEEECCTTCBHHHHH
T ss_pred             EEEEeCCCCCcHHHHH
Confidence            9999999999999986

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.24  E-value=1.6e-11  Score=128.34  Aligned_cols=104  Identities=16%  Similarity=0.130  Sum_probs=94.6

Q ss_pred             EEECCCC-CccccCcccccCCCCCCEEECcC-CcCcccCCccccCCCCCCEEEcccccCccCCCccccCCCCCceeeccc
Q 041300           80 HLDLSLN-GFFGTIPSQIGNLTKLSYISLDS-NQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYS  157 (716)
Q Consensus        80 ~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  157 (716)
                      .++++++ ++.. +|. |..+++|++|+|++ |.|++..+..|+.|++|++|+|++|.|++..|..|.++++|++|+|++
T Consensus        12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            4688888 8875 666 99999999999996 999988888999999999999999999999999999999999999999


Q ss_pred             ccccCCCCccccCCcCCcEEEeecccccc
Q 041300          158 NHLNGSLPPFLGNLSNIVRLYINNNSLSG  186 (716)
Q Consensus       158 N~l~~~~p~~~~~l~~L~~L~L~~n~l~~  186 (716)
                      |.|++..+..|..++ |+.|+|.+|.+..
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             CccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            999988888888776 9999999998863

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=99.23  E-value=6.6e-12  Score=128.73  Aligned_cols=92  Identities=37%  Similarity=0.484  Sum_probs=79.2

Q ss_pred             HhhcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeee
Q 041300          621 RETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSF  700 (716)
Q Consensus       621 ~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~  700 (716)
                      ....+|...+.||+|+||.||+|+. .++.||||++.....  .....++|.+|++++++++|||||++++++...+..+
T Consensus        34 i~~~~y~i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~--~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~  110 (309)
T 3p86_A           34 IPWCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDF--HAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLS  110 (309)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEECCCCC--SHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTCCE
T ss_pred             CChhHceeeeEeecCCCeEEEEEEE-CCCcEEEEEecCCCC--CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCceE
Confidence            3346788899999999999999986 678899999976432  1224567999999999999999999999999999999


Q ss_pred             EEEcccCCCCHHhHh
Q 041300          701 LVYEFLERGSLAAIL  715 (716)
Q Consensus       701 lv~Ey~~~GsL~~~l  715 (716)
                      +|||||++|+|.+++
T Consensus       111 lv~e~~~~~~L~~~l  125 (309)
T 3p86_A          111 IVTEYLSRGSLYRLL  125 (309)
T ss_dssp             EEEECCTTCBHHHHH
T ss_pred             EEEecCCCCcHHHHH
Confidence            999999999999876

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=99.23  E-value=2.2e-11  Score=125.03  Aligned_cols=88  Identities=26%  Similarity=0.484  Sum_probs=77.4

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ++|...++||+|+||+||+|.. .+++.||+|++...   . ....+.|.+|++++.+++|||||++++++.+++..++|
T Consensus        10 ~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~---~-~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv   85 (310)
T 3s95_A           10 SDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRF---D-EETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFI   85 (310)
T ss_dssp             GGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCC---C-HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             hHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccC---C-HHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEE
Confidence            4688889999999999999975 46899999998542   2 22457899999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      |||+++|+|.+++
T Consensus        86 ~e~~~~~~L~~~l   98 (310)
T 3s95_A           86 TEYIKGGTLRGII   98 (310)
T ss_dssp             EECCTTCBHHHHH
T ss_pred             EEecCCCcHHHHH
Confidence            9999999999886

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.23  E-value=1.3e-11  Score=123.98  Aligned_cols=87  Identities=26%  Similarity=0.507  Sum_probs=77.8

Q ss_pred             cCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      .+|...+.||+|+||.||+|...++..||||++.....     ..+++.+|++++++++||||+++++++.+++..++||
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-----~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   84 (269)
T 4hcu_A           10 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM-----SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVF   84 (269)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTSB-----CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEE
T ss_pred             hhceeeheecCCCccEEEEEEecCCCeEEEEEeccccc-----CHHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEE
Confidence            46888899999999999999887888999999975321     3467999999999999999999999999989999999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      ||+++|+|.+++
T Consensus        85 e~~~~~~L~~~l   96 (269)
T 4hcu_A           85 EFMEHGCLSDYL   96 (269)
T ss_dssp             ECCTTCBHHHHH
T ss_pred             EeCCCCcHHHHH
Confidence            999999999886

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=99.23  E-value=3.8e-12  Score=136.47  Aligned_cols=99  Identities=21%  Similarity=0.283  Sum_probs=81.5

Q ss_pred             HHHHHHhhcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEE
Q 041300          616 YDEIVRETNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCS  694 (716)
Q Consensus       616 ~~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~  694 (716)
                      +.++....++|...++||+|+||+||+|+.. +++.||||++.+...... .....+.+|+.++..++|||||+++++|.
T Consensus        66 ~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~-~~~~~~~~E~~il~~~~hp~Iv~l~~~~~  144 (437)
T 4aw2_A           66 VKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKR-AETACFREERDVLVNGDSKWITTLHYAFQ  144 (437)
T ss_dssp             HHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHT-TTTCCHHHHHHHHHHSCTTTBCCEEEEEE
T ss_pred             hhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhH-HHHHHHHHHHHHHHhCCCCCEEEEEEEEe
Confidence            4455566788999999999999999999765 478899999965211111 01234889999999999999999999999


Q ss_pred             eCCeeeEEEcccCCCCHHhHh
Q 041300          695 HAQHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       695 ~~~~~~lv~Ey~~~GsL~~~l  715 (716)
                      +++..|+|||||++|+|.+++
T Consensus       145 ~~~~~~lV~Ey~~gg~L~~~l  165 (437)
T 4aw2_A          145 DDNNLYLVMDYYVGGDLLTLL  165 (437)
T ss_dssp             CSSEEEEEECCCTTCBHHHHH
T ss_pred             eCCEEEEEEecCCCCcHHHHH
Confidence            999999999999999999886

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=99.22  E-value=1.3e-11  Score=127.68  Aligned_cols=89  Identities=27%  Similarity=0.504  Sum_probs=76.3

Q ss_pred             cCCcccccccCCCceEEEEEEcC----CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCee
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP----SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHS  699 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~----~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~  699 (716)
                      ..|...+.||+|+||.||+|...    .+..||||++....   .....+.|.+|++++++++|||||++++++.+++..
T Consensus        49 ~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~  125 (325)
T 3kul_A           49 SRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGY---TERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLA  125 (325)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTC---CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCC
T ss_pred             hHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCC---CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCcc
Confidence            46788899999999999999764    34569999997532   122456799999999999999999999999988899


Q ss_pred             eEEEcccCCCCHHhHh
Q 041300          700 FLVYEFLERGSLAAIL  715 (716)
Q Consensus       700 ~lv~Ey~~~GsL~~~l  715 (716)
                      ++|||||++|+|.+++
T Consensus       126 ~lv~e~~~~~~L~~~l  141 (325)
T 3kul_A          126 MIVTEYMENGSLDTFL  141 (325)
T ss_dssp             EEEEECCTTCBHHHHH
T ss_pred             EEEeeCCCCCcHHHHH
Confidence            9999999999999886

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=99.22  E-value=1.3e-11  Score=129.95  Aligned_cols=90  Identities=24%  Similarity=0.475  Sum_probs=76.6

Q ss_pred             hcCCcccccccCCCceEEEEEEc--------CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEE
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAEL--------PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFC  693 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~--------~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~  693 (716)
                      .++|...+.||+|+||.||+|+.        .++..||||++....   .....+++.+|+++++++ +|||||+++++|
T Consensus        80 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~  156 (370)
T 2psq_A           80 RDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDA---TEKDLSDLVSEMEMMKMIGKHKNIINLLGAC  156 (370)
T ss_dssp             GGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTC---BHHHHHHHHHHHHHHHHSCCCTTBCCEEEEE
T ss_pred             HHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCc---CHHHHHHHHHHHHHHHHhcCCCCEeeEEEEE
Confidence            35688889999999999999964        234579999997532   222456799999999999 899999999999


Q ss_pred             EeCCeeeEEEcccCCCCHHhHh
Q 041300          694 SHAQHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       694 ~~~~~~~lv~Ey~~~GsL~~~l  715 (716)
                      .+.+..|+||||+++|+|.+++
T Consensus       157 ~~~~~~~lv~e~~~~g~L~~~l  178 (370)
T 2psq_A          157 TQDGPLYVIVEYASKGNLREYL  178 (370)
T ss_dssp             CSSSSCEEEEECCTTCBHHHHH
T ss_pred             ccCCCEEEEEEcCCCCCHHHHH
Confidence            9999999999999999999986

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=99.22  E-value=6.2e-12  Score=132.91  Aligned_cols=91  Identities=29%  Similarity=0.526  Sum_probs=78.4

Q ss_pred             hhcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeee
Q 041300          622 ETNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSF  700 (716)
Q Consensus       622 ~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~  700 (716)
                      ..++|...+.||+|+||.||+|... +++.||||++....   .....++|.+|++++++++|||||+++|+|..++..+
T Consensus       112 ~~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~  188 (377)
T 3cbl_A          112 NHEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETL---PPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIY  188 (377)
T ss_dssp             CGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTS---CHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCE
T ss_pred             chHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccC---CHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcE
Confidence            3457888999999999999999875 68999999987532   1113457899999999999999999999999888999


Q ss_pred             EEEcccCCCCHHhHh
Q 041300          701 LVYEFLERGSLAAIL  715 (716)
Q Consensus       701 lv~Ey~~~GsL~~~l  715 (716)
                      +|||||++|+|.+++
T Consensus       189 lv~e~~~~g~L~~~l  203 (377)
T 3cbl_A          189 IVMELVQGGDFLTFL  203 (377)
T ss_dssp             EEEECCTTCBHHHHH
T ss_pred             EEEEcCCCCCHHHHH
Confidence            999999999999886

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=99.22  E-value=1.9e-11  Score=127.94  Aligned_cols=92  Identities=21%  Similarity=0.259  Sum_probs=78.6

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccc--hhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeee
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQ--IADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSF  700 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~--~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~  700 (716)
                      +.|...+.||+|+||.||++... +|+.||||++........  ....+.+.+|++++.+++|||||++++++.+++..|
T Consensus        12 ~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~   91 (361)
T 2yab_A           12 DFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTDVV   91 (361)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEE
T ss_pred             hceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCEEE
Confidence            46888999999999999999654 689999999976432211  113467999999999999999999999999999999


Q ss_pred             EEEcccCCCCHHhHh
Q 041300          701 LVYEFLERGSLAAIL  715 (716)
Q Consensus       701 lv~Ey~~~GsL~~~l  715 (716)
                      +|||||++|+|.+++
T Consensus        92 lv~e~~~gg~L~~~l  106 (361)
T 2yab_A           92 LILELVSGGELFDFL  106 (361)
T ss_dssp             EEEECCCSCBHHHHH
T ss_pred             EEEEcCCCCcHHHHH
Confidence            999999999999986

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=99.22  E-value=2.1e-11  Score=124.11  Aligned_cols=91  Identities=25%  Similarity=0.355  Sum_probs=78.4

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      +.|...+.||+|+||.||+|.. .++..||||++........ ...+.|.+|+.++.+++|||||++++++.+++..|+|
T Consensus        11 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~-~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv   89 (294)
T 4eqm_A           11 ERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKE-ETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLV   89 (294)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCH-HHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEE
T ss_pred             ccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccH-HHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEE
Confidence            4688899999999999999964 4689999999865332222 2456799999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      |||+++|+|.+++
T Consensus        90 ~e~~~g~~L~~~l  102 (294)
T 4eqm_A           90 MEYIEGPTLSEYI  102 (294)
T ss_dssp             EECCCSCBHHHHH
T ss_pred             EeCCCCCCHHHHH
Confidence            9999999999876

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=99.22  E-value=4e-12  Score=135.20  Aligned_cols=98  Identities=17%  Similarity=0.294  Sum_probs=80.1

Q ss_pred             HHHHHhhcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEe
Q 041300          617 DEIVRETNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSH  695 (716)
Q Consensus       617 ~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~  695 (716)
                      .++.....+|...++||+|+||+||+|+.. +++.||||++.+...... ...+.+.+|+.+++.++|||||++++++.+
T Consensus        62 ~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~-~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~  140 (410)
T 3v8s_A           62 RDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKR-SDSAFFWEERDIMAFANSPWVVQLFYAFQD  140 (410)
T ss_dssp             HHHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHT-CCCSTHHHHHHHHHHCCCTTBCCEEEEEEC
T ss_pred             HhcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhh-HHHHHHHHHHHHHHhCCCCCCCeEEEEEEE
Confidence            344455678999999999999999999754 588999999865211110 012348899999999999999999999999


Q ss_pred             CCeeeEEEcccCCCCHHhHh
Q 041300          696 AQHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       696 ~~~~~lv~Ey~~~GsL~~~l  715 (716)
                      ++..|+|||||++|+|.+++
T Consensus       141 ~~~~~lV~E~~~gg~L~~~l  160 (410)
T 3v8s_A          141 DRYLYMVMEYMPGGDLVNLM  160 (410)
T ss_dssp             SSEEEEEECCCTTEEHHHHH
T ss_pred             CCEEEEEEeCCCCCcHHHHH
Confidence            99999999999999999876

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=99.21  E-value=2.1e-11  Score=126.42  Aligned_cols=71  Identities=25%  Similarity=0.515  Sum_probs=58.2

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ  697 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~  697 (716)
                      .+|...+.||+|+||.||+|+.. +++.||||++.....  . ...+.+.+|++++++++|||||++++++.+.+
T Consensus         6 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~--~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~   77 (332)
T 3qd2_B            6 TDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNR--E-LAREKVMREVKALAKLEHPGIVRYFNAWLETP   77 (332)
T ss_dssp             HHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCST--T-THHHHHHHHHHHHTSCCCTTBCCEEEEEEECC
T ss_pred             hcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCc--h-hHHHHHHHHHHHHHhCCCCCEeeEEEEEEEec
Confidence            46888899999999999999765 789999999975321  1 24577999999999999999999999986643

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=99.21  E-value=1.1e-11  Score=128.25  Aligned_cols=92  Identities=24%  Similarity=0.399  Sum_probs=71.9

Q ss_pred             cCCcccccccCCCceEEEEEEc----CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCee
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL----PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHS  699 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~----~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~  699 (716)
                      .+|...++||+|+||.||+++.    .+++.||||++.+............+.+|++++++++|||||++++++..++..
T Consensus        17 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~   96 (327)
T 3a62_A           17 ECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGKL   96 (327)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSCE
T ss_pred             HHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCEE
Confidence            5688999999999999999975    468899999997643222222345688999999999999999999999999999


Q ss_pred             eEEEcccCCCCHHhHh
Q 041300          700 FLVYEFLERGSLAAIL  715 (716)
Q Consensus       700 ~lv~Ey~~~GsL~~~l  715 (716)
                      |+|||||++|+|.+++
T Consensus        97 ~lv~e~~~~~~L~~~l  112 (327)
T 3a62_A           97 YLILEYLSGGELFMQL  112 (327)
T ss_dssp             EEEEECCTTEEHHHHH
T ss_pred             EEEEeCCCCCcHHHHH
Confidence            9999999999998876

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=99.21  E-value=2.3e-11  Score=123.99  Aligned_cols=89  Identities=24%  Similarity=0.418  Sum_probs=77.6

Q ss_pred             hcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL  701 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l  701 (716)
                      ...|...+.||+|+||+||+|.. .+++.||||++......    ..+.+.+|+.++++++|||||++++++..++..++
T Consensus        19 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~----~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~l   94 (297)
T 3fxz_A           19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQP----KKELIINEILVMRENKNPNIVNYLDSYLVGDELWV   94 (297)
T ss_dssp             GGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCS----CHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred             hhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeeccccc----HHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEE
Confidence            35688999999999999999974 56899999998653211    34678999999999999999999999999999999


Q ss_pred             EEcccCCCCHHhHh
Q 041300          702 VYEFLERGSLAAIL  715 (716)
Q Consensus       702 v~Ey~~~GsL~~~l  715 (716)
                      |||||++|+|.+++
T Consensus        95 v~e~~~~~~L~~~~  108 (297)
T 3fxz_A           95 VMEYLAGGSLTDVV  108 (297)
T ss_dssp             EEECCTTCBHHHHH
T ss_pred             EEECCCCCCHHHHH
Confidence            99999999999876

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=99.20  E-value=6.8e-12  Score=133.50  Aligned_cols=99  Identities=22%  Similarity=0.288  Sum_probs=81.6

Q ss_pred             HHHHHHhhcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEE
Q 041300          616 YDEIVRETNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCS  694 (716)
Q Consensus       616 ~~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~  694 (716)
                      +.+.....++|...++||+|+||+||+++.. +++.||||++.+...... ...+.+.+|+.++.+++|||||++++++.
T Consensus        53 ~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~-~~~~~~~~E~~il~~~~hp~Iv~l~~~~~  131 (412)
T 2vd5_A           53 LKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKR-GEVSCFREERDVLVNGDRRWITQLHFAFQ  131 (412)
T ss_dssp             HHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHH-GGGCCHHHHHHHHHHSCTTTBCCEEEEEE
T ss_pred             hhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhH-HHHHHHHHHHHHHHhcCCCCeeeEEEEEe
Confidence            3445556788999999999999999999764 689999999965211111 12234889999999999999999999999


Q ss_pred             eCCeeeEEEcccCCCCHHhHh
Q 041300          695 HAQHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       695 ~~~~~~lv~Ey~~~GsL~~~l  715 (716)
                      +.+..|+|||||++|+|.+++
T Consensus       132 ~~~~~~lVmE~~~gg~L~~~l  152 (412)
T 2vd5_A          132 DENYLYLVMEYYVGGDLLTLL  152 (412)
T ss_dssp             CSSEEEEEECCCCSCBHHHHH
T ss_pred             eCCEEEEEEcCCCCCcHHHHH
Confidence            999999999999999999886

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=99.20  E-value=2.3e-11  Score=123.08  Aligned_cols=88  Identities=24%  Similarity=0.479  Sum_probs=75.5

Q ss_pred             hcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ..+|...+.||+|+||.||+|...++..||||++.....     ..+++.+|++++.+++||||+++++++.+++..++|
T Consensus        23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-----~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv   97 (283)
T 3gen_A           23 PKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM-----SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFII   97 (283)
T ss_dssp             GGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTSB-----CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEE
T ss_pred             HHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCCC-----CHHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEE
Confidence            457888899999999999999988888999999975321     346799999999999999999999999998999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      |||+++|+|.+++
T Consensus        98 ~e~~~~~~L~~~l  110 (283)
T 3gen_A           98 TEYMANGCLLNYL  110 (283)
T ss_dssp             ECCCTTCBHHHHH
T ss_pred             EeccCCCcHHHHH
Confidence            9999999999886

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.20  E-value=1.8e-11  Score=132.63  Aligned_cols=89  Identities=25%  Similarity=0.443  Sum_probs=77.9

Q ss_pred             HhhcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeee
Q 041300          621 RETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSF  700 (716)
Q Consensus       621 ~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~  700 (716)
                      ....+|...+.||+|+||+||+|...++..||||+++...     ...++|.+|+++|++++|||||++++++. .+..+
T Consensus       185 i~~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~-----~~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~~~~  258 (454)
T 1qcf_A          185 IPRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS-----MSVEAFLAEANVMKTLQHDKLVKLHAVVT-KEPIY  258 (454)
T ss_dssp             CCGGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTS-----BCHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCE
T ss_pred             echHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCC-----ccHHHHHHHHHHHhhCCCCCEeeEEEEEe-CCccE
Confidence            3456788899999999999999998888899999997532     13578999999999999999999999986 66789


Q ss_pred             EEEcccCCCCHHhHh
Q 041300          701 LVYEFLERGSLAAIL  715 (716)
Q Consensus       701 lv~Ey~~~GsL~~~l  715 (716)
                      +|||||++|+|.+++
T Consensus       259 lv~e~~~~g~L~~~l  273 (454)
T 1qcf_A          259 IITEFMAKGSLLDFL  273 (454)
T ss_dssp             EEECCCTTCBHHHHH
T ss_pred             EEEeecCCCcHHHHH
Confidence            999999999999987

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=99.19  E-value=2e-11  Score=122.33  Aligned_cols=88  Identities=28%  Similarity=0.485  Sum_probs=78.1

Q ss_pred             hcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ..+|...+.||+|+||.||+|...++..||||++.....     ..+++.+|++++.+++|||||++++++.+++..++|
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-----~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv   81 (268)
T 3sxs_A            7 REEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSM-----SEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIV   81 (268)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTTB-----CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEE
T ss_pred             hhheeeeeeeccCCCceEEEEEecCceeEEEEEeccCCC-----cHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEE
Confidence            356888899999999999999988888899999975321     346799999999999999999999999988899999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      |||+++|+|.+++
T Consensus        82 ~e~~~~~~L~~~l   94 (268)
T 3sxs_A           82 TEYISNGCLLNYL   94 (268)
T ss_dssp             EECCTTCBHHHHH
T ss_pred             EEccCCCcHHHHH
Confidence            9999999999876

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=99.19  E-value=2.4e-11  Score=127.38  Aligned_cols=91  Identities=20%  Similarity=0.346  Sum_probs=78.3

Q ss_pred             hcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL  701 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l  701 (716)
                      .++|...+.||+|+||.||+|.. .+++.||||++......  ....+.+.+|++++++++|||||++++++.+++..|+
T Consensus        28 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~--~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~l  105 (362)
T 2bdw_A           28 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLS--ARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYL  105 (362)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCC--HHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred             ccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCC--HHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEE
Confidence            34688999999999999999965 46899999999764321  1244678999999999999999999999999999999


Q ss_pred             EEcccCCCCHHhHh
Q 041300          702 VYEFLERGSLAAIL  715 (716)
Q Consensus       702 v~Ey~~~GsL~~~l  715 (716)
                      |||||++|+|.+++
T Consensus       106 v~e~~~gg~L~~~l  119 (362)
T 2bdw_A          106 VFDLVTGGELFEDI  119 (362)
T ss_dssp             EECCCCSCBHHHHH
T ss_pred             EEecCCCCCHHHHH
Confidence            99999999998876

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=99.19  E-value=3.1e-11  Score=124.79  Aligned_cols=92  Identities=21%  Similarity=0.303  Sum_probs=78.2

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccc--hhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeee
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQ--IADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSF  700 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~--~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~  700 (716)
                      +.|...+.||+|+||.||++... ++..||||++........  ....+.+.+|++++.+++|||||++++++.+++..+
T Consensus        11 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~   90 (326)
T 2y0a_A           11 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVI   90 (326)
T ss_dssp             HHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             cceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence            45888899999999999999754 689999999976432211  113567999999999999999999999999999999


Q ss_pred             EEEcccCCCCHHhHh
Q 041300          701 LVYEFLERGSLAAIL  715 (716)
Q Consensus       701 lv~Ey~~~GsL~~~l  715 (716)
                      +|||||++|+|.+++
T Consensus        91 lv~e~~~~~~L~~~l  105 (326)
T 2y0a_A           91 LILELVAGGELFDFL  105 (326)
T ss_dssp             EEEECCCSCBHHHHH
T ss_pred             EEEEcCCCCCHHHHH
Confidence            999999999999986

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=99.19  E-value=1.8e-11  Score=126.93  Aligned_cols=91  Identities=23%  Similarity=0.288  Sum_probs=77.2

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ++|...++||+|+||+||+++.. +++.||||++.+...... .....+.+|+.++++++|||||++++++.+.+..|+|
T Consensus         5 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~-~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv   83 (337)
T 1o6l_A            5 NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAK-DEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFV   83 (337)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHT-TCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEE
T ss_pred             HHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhh-hHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEE
Confidence            56888999999999999999754 689999999975321111 1345688999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      ||||++|+|.+++
T Consensus        84 ~E~~~gg~L~~~l   96 (337)
T 1o6l_A           84 MEYANGGELFFHL   96 (337)
T ss_dssp             EECCTTCBHHHHH
T ss_pred             EeCCCCCcHHHHH
Confidence            9999999998876

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.19  E-value=1.4e-11  Score=135.04  Aligned_cols=89  Identities=30%  Similarity=0.552  Sum_probs=78.3

Q ss_pred             hhcCCcccccccCCCceEEEEEEcCC-CCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeee
Q 041300          622 ETNDFDAEYCIGNGGHGSVYRAELPS-GEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSF  700 (716)
Q Consensus       622 ~~~~~~~~~~ig~g~~g~v~~~~~~~-~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~  700 (716)
                      ...+|...+.||+|+||.||+|.... +..||||++.....     ..++|.+|+++|++++|||||+++|+|...+..+
T Consensus       218 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~-----~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~  292 (495)
T 1opk_A          218 ERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-----EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFY  292 (495)
T ss_dssp             CGGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSSS-----CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE
T ss_pred             CHHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCccc-----chHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEE
Confidence            34568888999999999999998754 78999999975321     3467999999999999999999999999999999


Q ss_pred             EEEcccCCCCHHhHh
Q 041300          701 LVYEFLERGSLAAIL  715 (716)
Q Consensus       701 lv~Ey~~~GsL~~~l  715 (716)
                      +|||||++|+|.+++
T Consensus       293 lv~E~~~~g~L~~~l  307 (495)
T 1opk_A          293 IITEFMTYGNLLDYL  307 (495)
T ss_dssp             EEEECCTTCBHHHHH
T ss_pred             EEEEccCCCCHHHHH
Confidence            999999999999987

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=99.19  E-value=3.7e-11  Score=123.86  Aligned_cols=89  Identities=20%  Similarity=0.252  Sum_probs=77.3

Q ss_pred             hcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL  701 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l  701 (716)
                      .+.|...+.||+|+||.||+|... ++..||+|.+...    . .....+.+|+++++.++|||||++++++.+.+..++
T Consensus         4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~----~-~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~l   78 (321)
T 1tki_A            4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVK----G-TDQVLVKKEISILNIARHRNILHLHESFESMEELVM   78 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCC----T-HHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEE
T ss_pred             hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecC----c-ccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEE
Confidence            356888999999999999999654 5889999998642    1 134568999999999999999999999999999999


Q ss_pred             EEcccCCCCHHhHhC
Q 041300          702 VYEFLERGSLAAILS  716 (716)
Q Consensus       702 v~Ey~~~GsL~~~l~  716 (716)
                      |||||++|+|.+++.
T Consensus        79 v~e~~~g~~L~~~l~   93 (321)
T 1tki_A           79 IFEFISGLDIFERIN   93 (321)
T ss_dssp             EECCCCCCBHHHHHT
T ss_pred             EEEeCCCCCHHHHHH
Confidence            999999999998863

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.18  E-value=2.3e-11  Score=131.67  Aligned_cols=89  Identities=26%  Similarity=0.503  Sum_probs=77.4

Q ss_pred             hhcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300          622 ETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL  701 (716)
Q Consensus       622 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l  701 (716)
                      ...+|...+.||+|+||.||+|...++..||||++.....     ..++|.+|+++|++++|||||++++++.+ +..++
T Consensus       182 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~-----~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~i  255 (452)
T 1fmk_A          182 PRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-----SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYI  255 (452)
T ss_dssp             CGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSS-----CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEE
T ss_pred             ChhHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCCC-----CHHHHHHHHHHHHhCCCCCEeeEEEEEcC-CceEE
Confidence            3456888999999999999999988778899999976321     34679999999999999999999999865 67899


Q ss_pred             EEcccCCCCHHhHhC
Q 041300          702 VYEFLERGSLAAILS  716 (716)
Q Consensus       702 v~Ey~~~GsL~~~l~  716 (716)
                      |||||++|+|.++++
T Consensus       256 v~e~~~~gsL~~~l~  270 (452)
T 1fmk_A          256 VTEYMSKGSLLDFLK  270 (452)
T ss_dssp             EECCCTTCBHHHHHS
T ss_pred             EehhhcCCCHHHHHH
Confidence            999999999999874

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=99.18  E-value=1.4e-11  Score=123.75  Aligned_cols=89  Identities=19%  Similarity=0.354  Sum_probs=76.7

Q ss_pred             cCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC--CeeeE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA--QHSFL  701 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~--~~~~l  701 (716)
                      .+|...+.||+|+||.||+|.. +++.||||++.....  .....++|.+|++++++++|||||++++++.+.  +..++
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~-~~~~~avK~~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~l   86 (271)
T 3kmu_A           10 KQLNFLTKLNENHSGELWKGRW-QGNDIVVKVLKVRDW--STRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTL   86 (271)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECCTTC--CHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEE
T ss_pred             HHhHHHHHhcCCCcceEEEEEE-CCeeEEEEEeccccc--CHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEe
Confidence            4688889999999999999987 488999999976422  122456799999999999999999999999876  67899


Q ss_pred             EEcccCCCCHHhHh
Q 041300          702 VYEFLERGSLAAIL  715 (716)
Q Consensus       702 v~Ey~~~GsL~~~l  715 (716)
                      ||||+++|+|.+++
T Consensus        87 v~e~~~~~~L~~~l  100 (271)
T 3kmu_A           87 ITHWMPYGSLYNVL  100 (271)
T ss_dssp             EEECCTTCBHHHHH
T ss_pred             eecccCCCcHHHHH
Confidence            99999999999986

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=99.18  E-value=1.9e-11  Score=125.68  Aligned_cols=91  Identities=24%  Similarity=0.402  Sum_probs=77.1

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      .+|...++||+|+||+||+++.. +|+.||||++.+...... ...+.+.+|+.+++.++|||||++++++.+.+..|+|
T Consensus         6 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~-~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv   84 (318)
T 1fot_A            6 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRL-KQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMI   84 (318)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHT-TCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEE
T ss_pred             HHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhh-hHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEE
Confidence            56888999999999999999754 689999999975321111 1345688999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      ||||++|+|.+++
T Consensus        85 ~e~~~gg~L~~~l   97 (318)
T 1fot_A           85 MDYIEGGELFSLL   97 (318)
T ss_dssp             ECCCCSCBHHHHH
T ss_pred             EeCCCCCCHHHHH
Confidence            9999999999886

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=99.18  E-value=2.4e-11  Score=126.15  Aligned_cols=94  Identities=24%  Similarity=0.418  Sum_probs=78.6

Q ss_pred             HHHhhcCCcccccccCCCceEEEEEEcCC------CCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccce
Q 041300          619 IVRETNDFDAEYCIGNGGHGSVYRAELPS------GEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYG  691 (716)
Q Consensus       619 ~~~~~~~~~~~~~ig~g~~g~v~~~~~~~------~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g  691 (716)
                      +.....+|...+.||+|+||.||+|....      ...||||.+....   .....+.+.+|+++++++ +|||||++++
T Consensus        41 ~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~~h~~iv~~~~  117 (333)
T 2i1m_A           41 WEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTA---HADEKEALMSELKIMSHLGQHENIVNLLG  117 (333)
T ss_dssp             GBCCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTC---CHHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             ccCCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhccccc---ChHHHHHHHHHHHHHHhhcCCCCeeeEEE
Confidence            33445778999999999999999997532      2479999997532   122456799999999999 8999999999


Q ss_pred             EEEeCCeeeEEEcccCCCCHHhHh
Q 041300          692 FCSHAQHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       692 ~~~~~~~~~lv~Ey~~~GsL~~~l  715 (716)
                      ++..++..++||||+++|+|.+++
T Consensus       118 ~~~~~~~~~lv~e~~~~g~L~~~l  141 (333)
T 2i1m_A          118 ACTHGGPVLVITEYCCYGDLLNFL  141 (333)
T ss_dssp             EECSSSSCEEEEECCTTEEHHHHH
T ss_pred             EEecCCceEEEEecCCCCcHHHHH
Confidence            999999999999999999999886

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=99.17  E-value=2e-11  Score=122.63  Aligned_cols=91  Identities=32%  Similarity=0.466  Sum_probs=72.5

Q ss_pred             cCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      .+|...+.||+|+||.||+|.. .+..||||++............+.+.+|+++++.++||||+++++++..++..++||
T Consensus         7 ~~~~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   85 (271)
T 3dtc_A            7 AELTLEEIIGIGGFGKVYRAFW-IGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVM   85 (271)
T ss_dssp             TSEEEEEEEEEETTEEEEEEEE-TTEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEEE
T ss_pred             hheeeeeeeccCCCeEEEEEEE-cCCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEEE
Confidence            5688899999999999999986 478999999875432222223467999999999999999999999999999999999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      ||+++|+|.+++
T Consensus        86 e~~~~~~L~~~~   97 (271)
T 3dtc_A           86 EFARGGPLNRVL   97 (271)
T ss_dssp             ECCTTEEHHHHH
T ss_pred             EcCCCCCHHHHh
Confidence            999999999876

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=99.17  E-value=4.3e-11  Score=124.56  Aligned_cols=91  Identities=23%  Similarity=0.329  Sum_probs=77.7

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeCCeeeE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHSFL  701 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~~~~~l  701 (716)
                      .+|...++||+|+||+||+++.. +++.||||++.+...... ...+.+.+|+.++.++ +|||||++++++.+.+..|+
T Consensus         9 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~-~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~l   87 (345)
T 3a8x_A            9 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDD-EDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF   87 (345)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSH-HHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred             hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcch-HHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEE
Confidence            46888999999999999999754 588999999976433222 2446688999999988 89999999999999999999


Q ss_pred             EEcccCCCCHHhHh
Q 041300          702 VYEFLERGSLAAIL  715 (716)
Q Consensus       702 v~Ey~~~GsL~~~l  715 (716)
                      |||||++|+|.+++
T Consensus        88 v~e~~~gg~L~~~l  101 (345)
T 3a8x_A           88 VIEYVNGGDLMFHM  101 (345)
T ss_dssp             EECCCCSCBHHHHH
T ss_pred             EEeCCCCCcHHHHH
Confidence            99999999998876

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=99.17  E-value=3.2e-11  Score=125.68  Aligned_cols=93  Identities=29%  Similarity=0.487  Sum_probs=79.3

Q ss_pred             HHhhcCCcccccccCCCceEEEEEEcC------CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEE
Q 041300          620 VRETNDFDAEYCIGNGGHGSVYRAELP------SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFC  693 (716)
Q Consensus       620 ~~~~~~~~~~~~ig~g~~g~v~~~~~~------~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~  693 (716)
                      ....++|...+.||+|+||.||+|+..      +++.||||++....   .....+.|.+|++++++++|||||++++++
T Consensus        43 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~  119 (343)
T 1luf_A           43 EYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEA---SADMQADFQREAALMAEFDNPNIVKLLGVC  119 (343)
T ss_dssp             BCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTC---CHHHHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred             EecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEecccc---CHHHHHHHHHHHHHHHhCCCCCEEEEEEEE
Confidence            344568999999999999999999753      34789999997532   122456799999999999999999999999


Q ss_pred             EeCCeeeEEEcccCCCCHHhHh
Q 041300          694 SHAQHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       694 ~~~~~~~lv~Ey~~~GsL~~~l  715 (716)
                      ..++..++||||+++|+|.+++
T Consensus       120 ~~~~~~~lv~e~~~~~~L~~~l  141 (343)
T 1luf_A          120 AVGKPMCLLFEYMAYGDLNEFL  141 (343)
T ss_dssp             CSSSSCEEEEECCTTCBHHHHH
T ss_pred             ccCCceEEEEecCCCCcHHHHH
Confidence            9999999999999999999986

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=99.17  E-value=2e-11  Score=126.00  Aligned_cols=89  Identities=27%  Similarity=0.377  Sum_probs=75.0

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ++|...+.||+|+||+||+|... +++.||||++......   ...+.+.+|+.+++.++|||||++++++.+++..|+|
T Consensus         7 ~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~---~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv   83 (323)
T 3tki_A            7 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAV---DCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLF   83 (323)
T ss_dssp             TCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC----------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEccccc---chHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEE
Confidence            57888999999999999999654 6899999998653211   1235689999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      ||||++|+|.+++
T Consensus        84 ~e~~~~~~L~~~l   96 (323)
T 3tki_A           84 LEYCSGGELFDRI   96 (323)
T ss_dssp             EECCTTEEGGGGS
T ss_pred             EEcCCCCcHHHHH
Confidence            9999999999876

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=99.17  E-value=1.2e-11  Score=130.00  Aligned_cols=97  Identities=23%  Similarity=0.410  Sum_probs=79.8

Q ss_pred             HHHHHHhhcCCcccccccCCCceEEEEEEc------CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccc
Q 041300          616 YDEIVRETNDFDAEYCIGNGGHGSVYRAEL------PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVK  688 (716)
Q Consensus       616 ~~~~~~~~~~~~~~~~ig~g~~g~v~~~~~------~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~  688 (716)
                      ...+....++|...+.||+|+||.||+|++      .+++.||||++....   .....+.|.+|++++.++ +|||||+
T Consensus        14 ~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~~hpniv~   90 (359)
T 3vhe_A           14 ASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGA---THSEHRALMSELKILIHIGHHLNVVN   90 (359)
T ss_dssp             HHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTC---CHHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred             cccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcC---CHHHHHHHHHHHHHHHhhcCCcceee
Confidence            345555677899999999999999999963      245789999997532   122346799999999999 8999999


Q ss_pred             cceEEEeCCe-eeEEEcccCCCCHHhHh
Q 041300          689 FYGFCSHAQH-SFLVYEFLERGSLAAIL  715 (716)
Q Consensus       689 l~g~~~~~~~-~~lv~Ey~~~GsL~~~l  715 (716)
                      +++++.+.+. .++|||||++|+|.+++
T Consensus        91 ~~~~~~~~~~~~~iv~e~~~~g~L~~~l  118 (359)
T 3vhe_A           91 LLGACTKPGGPLMVIVEFCKFGNLSTYL  118 (359)
T ss_dssp             EEEEECSTTSCCEEEEECCTTEEHHHHH
T ss_pred             eeeeeecCCCceEEEEEecCCCcHHHHH
Confidence            9999987654 89999999999999987

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=99.17  E-value=2.3e-11  Score=127.11  Aligned_cols=92  Identities=20%  Similarity=0.273  Sum_probs=76.5

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCc-cchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPC-DQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL  701 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~-~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l  701 (716)
                      +.|...+.||+|+||.||+|.. .+++.||||++...... ......+.+.+|+++++.++|||||++++++.+.+..|+
T Consensus        24 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~l  103 (351)
T 3c0i_A           24 DVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLYM  103 (351)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred             cceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEE
Confidence            4588899999999999999964 46899999998642111 011134679999999999999999999999999999999


Q ss_pred             EEcccCCCCHHhHh
Q 041300          702 VYEFLERGSLAAIL  715 (716)
Q Consensus       702 v~Ey~~~GsL~~~l  715 (716)
                      |||||++|+|.+++
T Consensus       104 v~e~~~g~~L~~~l  117 (351)
T 3c0i_A          104 VFEFMDGADLCFEI  117 (351)
T ss_dssp             EEECCSSCBHHHHH
T ss_pred             EEeCCCCCCHHHHH
Confidence            99999999998765

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=99.17  E-value=2.8e-11  Score=127.33  Aligned_cols=89  Identities=27%  Similarity=0.477  Sum_probs=76.3

Q ss_pred             cCCcccccccCCCceEEEEEEcC------CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP------SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ  697 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~------~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~  697 (716)
                      .+|...+.||+|+||+||+|.+.      ++..||||++....   ......+|.+|+.++++++|||||++++++.+.+
T Consensus        71 ~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~  147 (367)
T 3l9p_A           71 KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVC---SEQDELDFLMEALIISKFNHQNIVRCIGVSLQSL  147 (367)
T ss_dssp             GGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSC---CHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             hHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEeccccc---ChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCC
Confidence            56888899999999999999753      35689999997532   1224567999999999999999999999999988


Q ss_pred             eeeEEEcccCCCCHHhHh
Q 041300          698 HSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       698 ~~~lv~Ey~~~GsL~~~l  715 (716)
                      ..++|||||++|+|.+++
T Consensus       148 ~~~lv~e~~~~g~L~~~l  165 (367)
T 3l9p_A          148 PRFILLELMAGGDLKSFL  165 (367)
T ss_dssp             SCEEEEECCTTEEHHHHH
T ss_pred             CCEEEEEeCCCCCHHHHH
Confidence            999999999999999886

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=99.16  E-value=2.6e-11  Score=126.50  Aligned_cols=96  Identities=24%  Similarity=0.313  Sum_probs=79.6

Q ss_pred             HHhhcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCcc-chhhHHHHHHHHHHHhcCCCCCccccceEEEeCC
Q 041300          620 VRETNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCD-QIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ  697 (716)
Q Consensus       620 ~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~-~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~  697 (716)
                      ....++|...+.||+|+||.||+|.. .++..||||++....... .....+.+.+|++++++++|||||++++++.+.+
T Consensus        22 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~  101 (345)
T 3hko_A           22 LELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDEQ  101 (345)
T ss_dssp             HHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECSS
T ss_pred             hhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccCC
Confidence            34456799999999999999999965 468899999986431110 1113467999999999999999999999999999


Q ss_pred             eeeEEEcccCCCCHHhHh
Q 041300          698 HSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       698 ~~~lv~Ey~~~GsL~~~l  715 (716)
                      ..++|||||++|+|.+++
T Consensus       102 ~~~lv~e~~~gg~L~~~l  119 (345)
T 3hko_A          102 YICLVMELCHGGHLLDKL  119 (345)
T ss_dssp             EEEEEEECCCSCBHHHHE
T ss_pred             eEEEEEeCCCCCcHHHHH
Confidence            999999999999999876

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=99.16  E-value=4e-11  Score=126.28  Aligned_cols=86  Identities=22%  Similarity=0.419  Sum_probs=69.2

Q ss_pred             CcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEc
Q 041300          626 FDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYE  704 (716)
Q Consensus       626 ~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~E  704 (716)
                      +...++||+|+||.||+|.. .+|+.||||++....    ....++|.+|++++++++|||||++++++...+..++|||
T Consensus        91 ~~~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~----~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E  166 (373)
T 2x4f_A           91 VSKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRG----MKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVME  166 (373)
T ss_dssp             EEEEEECC-----CEEEEEETTTCCEEEEEEEECCS----HHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             eecceEEecCcCEEEEEEEEcCCCcEEEEEEEcccc----cccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEe
Confidence            34466899999999999964 468999999997632    1245679999999999999999999999999999999999


Q ss_pred             ccCCCCHHhHh
Q 041300          705 FLERGSLAAIL  715 (716)
Q Consensus       705 y~~~GsL~~~l  715 (716)
                      ||++|+|.+++
T Consensus       167 ~~~~~~L~~~l  177 (373)
T 2x4f_A          167 YVDGGELFDRI  177 (373)
T ss_dssp             CCTTCEEHHHH
T ss_pred             CCCCCcHHHHH
Confidence            99999998875

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.16  E-value=3.3e-11  Score=130.38  Aligned_cols=87  Identities=29%  Similarity=0.531  Sum_probs=76.1

Q ss_pred             hhcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC-eee
Q 041300          622 ETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ-HSF  700 (716)
Q Consensus       622 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~-~~~  700 (716)
                      ...+|...+.||+|+||.||+|.+. ++.||||+++...      ..+.|.+|+++|++++|||||++++++...+ ..+
T Consensus       191 ~~~~~~~~~~lG~G~fg~V~~~~~~-~~~vavK~~~~~~------~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~  263 (450)
T 1k9a_A          191 NMKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA------TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLY  263 (450)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEET-TEEEEEEEESSCT------TSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEE
T ss_pred             ChHHeEEEeeecCcCCeeEEEEEec-CCeEEEEEeCCch------HHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceE
Confidence            3467888899999999999999874 7799999997532      3367999999999999999999999997765 689


Q ss_pred             EEEcccCCCCHHhHh
Q 041300          701 LVYEFLERGSLAAIL  715 (716)
Q Consensus       701 lv~Ey~~~GsL~~~l  715 (716)
                      +|||||++|+|.+++
T Consensus       264 iv~e~~~~g~L~~~l  278 (450)
T 1k9a_A          264 IVTEYMAKGSLVDYL  278 (450)
T ss_dssp             EEEECCTTCBHHHHH
T ss_pred             EEEEecCCCcHHHHH
Confidence            999999999999987

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=99.16  E-value=5.6e-11  Score=120.33  Aligned_cols=89  Identities=22%  Similarity=0.337  Sum_probs=77.3

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      +.|...+.||+|+||.||++.. .++..||||++......   ...+.+.+|++++++++|||||++++++.+.+..++|
T Consensus        22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~---~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv   98 (285)
T 3is5_A           22 DLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQ---VPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIV   98 (285)
T ss_dssp             HHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCC---SCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccc---hhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEE
Confidence            4588899999999999999965 46889999998764321   1356799999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      |||+++|+|.+++
T Consensus        99 ~e~~~~~~L~~~l  111 (285)
T 3is5_A           99 METCEGGELLERI  111 (285)
T ss_dssp             ECCCSCCBHHHHH
T ss_pred             EEeCCCCcHHHHH
Confidence            9999999998875

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=99.16  E-value=2.3e-11  Score=128.12  Aligned_cols=91  Identities=20%  Similarity=0.353  Sum_probs=77.1

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ++|...++||+|+||.||++... +++.||||++.+...... ...+.+.+|++++++++|||||++++++.+.+..|+|
T Consensus        15 ~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~-~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv   93 (384)
T 4fr4_A           15 DHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVER-NEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMV   93 (384)
T ss_dssp             GGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHT-TCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             HHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccH-HHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEE
Confidence            46888999999999999999654 588999999865321111 1346788999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      ||||++|+|.+++
T Consensus        94 ~e~~~gg~L~~~l  106 (384)
T 4fr4_A           94 VDLLLGGDLRYHL  106 (384)
T ss_dssp             ECCCTTEEHHHHH
T ss_pred             EecCCCCcHHHHH
Confidence            9999999998876

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.15  E-value=3.1e-11  Score=133.42  Aligned_cols=90  Identities=26%  Similarity=0.489  Sum_probs=77.9

Q ss_pred             HhhcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeee
Q 041300          621 RETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSF  700 (716)
Q Consensus       621 ~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~  700 (716)
                      .....|...+.||+|+||.||+|.+.++..||||++.....     ..++|.+|+++|++++|||||++++++.+ +..+
T Consensus       264 i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~-----~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~~  337 (535)
T 2h8h_A          264 IPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-----SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIY  337 (535)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTSS-----CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCE
T ss_pred             cchhhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCCC-----CHHHHHHHHHHHHhCCCCCEeeEEEEEee-ccce
Confidence            34456888999999999999999988778899999976321     34679999999999999999999999865 6789


Q ss_pred             EEEcccCCCCHHhHhC
Q 041300          701 LVYEFLERGSLAAILS  716 (716)
Q Consensus       701 lv~Ey~~~GsL~~~l~  716 (716)
                      +|||||++|+|.++|+
T Consensus       338 lv~e~~~~gsL~~~l~  353 (535)
T 2h8h_A          338 IVTEYMSKGSLLDFLK  353 (535)
T ss_dssp             EEECCCTTEEHHHHHS
T ss_pred             EeeehhcCCcHHHHHh
Confidence            9999999999999874

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=99.15  E-value=3.1e-11  Score=125.85  Aligned_cols=91  Identities=21%  Similarity=0.294  Sum_probs=77.4

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ++|...+.||+|+||+||+++.. +|+.||||++.+...... ...+.+.+|++++++++|||||++++++.+.+..|+|
T Consensus        41 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~-~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv  119 (350)
T 1rdq_E           41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKL-KQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMV  119 (350)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHT-TCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             HHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccH-HHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEE
Confidence            46888999999999999999754 689999999865321111 1346788999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      |||+++|+|.+++
T Consensus       120 ~e~~~gg~L~~~l  132 (350)
T 1rdq_E          120 MEYVAGGEMFSHL  132 (350)
T ss_dssp             EECCTTCBHHHHH
T ss_pred             EcCCCCCcHHHHH
Confidence            9999999999876

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=99.15  E-value=3.9e-11  Score=125.26  Aligned_cols=87  Identities=26%  Similarity=0.405  Sum_probs=70.8

Q ss_pred             hcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL  701 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l  701 (716)
                      .+.|...+.||+|+||.||+|... +++.||||++....      ..+.+.+|++++.+++|||||++++++..++..++
T Consensus        52 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~------~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l  125 (349)
T 2w4o_A           52 SDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV------DKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISL  125 (349)
T ss_dssp             GGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC----------------CHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred             cCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch------hHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEE
Confidence            456888999999999999999765 57899999997531      23568899999999999999999999999999999


Q ss_pred             EEcccCCCCHHhHh
Q 041300          702 VYEFLERGSLAAIL  715 (716)
Q Consensus       702 v~Ey~~~GsL~~~l  715 (716)
                      ||||+++|+|.+++
T Consensus       126 v~e~~~~~~L~~~l  139 (349)
T 2w4o_A          126 VLELVTGGELFDRI  139 (349)
T ss_dssp             EECCCCSCBHHHHH
T ss_pred             EEEeCCCCCHHHHH
Confidence            99999999999876

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=99.15  E-value=3.4e-11  Score=129.51  Aligned_cols=91  Identities=20%  Similarity=0.337  Sum_probs=76.3

Q ss_pred             hcCCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL  701 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l  701 (716)
                      .++|...+.||+|+||.||++. ..+|+.||+|++.....  .....+.+.+|++++++++|||||++++++.+++..|+
T Consensus        10 ~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~--~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~l   87 (444)
T 3soa_A           10 TEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKL--SARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYL   87 (444)
T ss_dssp             HHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSC--HHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEE
T ss_pred             cCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccC--CHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEE
Confidence            3568889999999999999995 45788999999976432  11245679999999999999999999999999999999


Q ss_pred             EEcccCCCCHHhHh
Q 041300          702 VYEFLERGSLAAIL  715 (716)
Q Consensus       702 v~Ey~~~GsL~~~l  715 (716)
                      |||||++|+|.+++
T Consensus        88 v~E~~~gg~L~~~i  101 (444)
T 3soa_A           88 IFDLVTGGELFEDI  101 (444)
T ss_dssp             EECCCBCCBHHHHH
T ss_pred             EEEeCCCCCHHHHH
Confidence            99999999998875

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=99.15  E-value=6.1e-11  Score=124.37  Aligned_cols=88  Identities=24%  Similarity=0.330  Sum_probs=77.0

Q ss_pred             hcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL  701 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l  701 (716)
                      ...|...+.||+|+||.||+++.. +++.||||++.....     ..+.+.+|+.++++++|||||++++++.+++..++
T Consensus        19 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-----~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~l   93 (361)
T 3uc3_A           19 SDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAA-----IDENVQREIINHRSLRHPNIVRFKEVILTPTHLAI   93 (361)
T ss_dssp             TTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTT-----SCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred             CCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCcc-----ccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEE
Confidence            356889999999999999999754 689999999975322     22568899999999999999999999999999999


Q ss_pred             EEcccCCCCHHhHh
Q 041300          702 VYEFLERGSLAAIL  715 (716)
Q Consensus       702 v~Ey~~~GsL~~~l  715 (716)
                      |||||++|+|.+++
T Consensus        94 v~e~~~~~~L~~~l  107 (361)
T 3uc3_A           94 IMEYASGGELYERI  107 (361)
T ss_dssp             EEECCCSCBHHHHH
T ss_pred             EEEeCCCCCHHHHH
Confidence            99999999999876

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=99.15  E-value=9.3e-11  Score=120.29  Aligned_cols=92  Identities=27%  Similarity=0.438  Sum_probs=77.3

Q ss_pred             hcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL  701 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l  701 (716)
                      ..+|...+.||+|+||.||+|.. .+++.||||++........ ....++.+|++++++++||||+++++++...+..++
T Consensus        31 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~l  109 (310)
T 2wqm_A           31 LANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDA-KARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNI  109 (310)
T ss_dssp             GGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCH-HHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEE
T ss_pred             ccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCH-HHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEE
Confidence            35688999999999999999974 5789999999975332222 245679999999999999999999999999999999


Q ss_pred             EEcccCCCCHHhHh
Q 041300          702 VYEFLERGSLAAIL  715 (716)
Q Consensus       702 v~Ey~~~GsL~~~l  715 (716)
                      ||||+++|+|.+++
T Consensus       110 v~e~~~~~~L~~~l  123 (310)
T 2wqm_A          110 VLELADAGDLSRMI  123 (310)
T ss_dssp             EEECCCSCBHHHHH
T ss_pred             EEecCCCCCHHHHH
Confidence            99999999999876

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.15  E-value=4.9e-11  Score=119.45  Aligned_cols=87  Identities=26%  Similarity=0.480  Sum_probs=77.7

Q ss_pred             cCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      .+|...+.||+|+||.||+|...++..||||++.....     ..+++.+|++++++++||||+++++++.+++..++||
T Consensus         8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~-----~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   82 (267)
T 3t9t_A            8 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM-----SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVT   82 (267)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTTB-----CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEE
T ss_pred             hheeeeeEecCCCceeEEEEEecCCCeEEEEEccccCC-----CHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEE
Confidence            46888899999999999999887888999999976321     3367999999999999999999999999989999999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      ||+++|+|.+++
T Consensus        83 e~~~~~~L~~~~   94 (267)
T 3t9t_A           83 EFMEHGCLSDYL   94 (267)
T ss_dssp             CCCTTCBHHHHH
T ss_pred             eCCCCCcHHHHH
Confidence            999999999886

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=99.15  E-value=5.8e-11  Score=126.07  Aligned_cols=90  Identities=20%  Similarity=0.249  Sum_probs=78.5

Q ss_pred             cCCcccccccCC--CceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeee
Q 041300          624 NDFDAEYCIGNG--GHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSF  700 (716)
Q Consensus       624 ~~~~~~~~ig~g--~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~  700 (716)
                      ++|...++||+|  +||.||+|+.. +++.||||++......  ....+.+.+|++++++++|||||++++++.+++..+
T Consensus        25 ~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~  102 (389)
T 3gni_B           25 GCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACS--NEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELW  102 (389)
T ss_dssp             GGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSC--HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEE
T ss_pred             CcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccC--hHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEEE
Confidence            568899999999  99999999754 6899999999764321  224567889999999999999999999999999999


Q ss_pred             EEEcccCCCCHHhHh
Q 041300          701 LVYEFLERGSLAAIL  715 (716)
Q Consensus       701 lv~Ey~~~GsL~~~l  715 (716)
                      +|||||++|+|.+++
T Consensus       103 lv~e~~~~~~L~~~l  117 (389)
T 3gni_B          103 VVTSFMAYGSAKDLI  117 (389)
T ss_dssp             EEEECCTTCBHHHHH
T ss_pred             EEEEccCCCCHHHHH
Confidence            999999999999876

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=99.14  E-value=7.8e-11  Score=124.42  Aligned_cols=88  Identities=20%  Similarity=0.351  Sum_probs=77.0

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      +.|...+.||+|+||.||+|.. .+++.||+|++....   . .....+.+|++++.+++|||||++++++.+.+..++|
T Consensus        51 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~---~-~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv  126 (387)
T 1kob_A           51 DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPY---P-LDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLI  126 (387)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS---H-HHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEE
T ss_pred             cceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccc---h-hhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEE
Confidence            4688899999999999999965 468899999987532   1 1345789999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      ||||++|+|.+++
T Consensus       127 ~E~~~gg~L~~~l  139 (387)
T 1kob_A          127 LEFLSGGELFDRI  139 (387)
T ss_dssp             EECCCCCBHHHHT
T ss_pred             EEcCCCCcHHHHH
Confidence            9999999999886

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=99.14  E-value=6.6e-11  Score=121.94  Aligned_cols=89  Identities=26%  Similarity=0.447  Sum_probs=75.5

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC--eee
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ--HSF  700 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~--~~~  700 (716)
                      ..|...++||+|+||+||+|... +++.||||++......   ...+.+.+|++++++++|||||++++++...+  ..+
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~---~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   85 (319)
T 4euu_A            9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFL---RPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKV   85 (319)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGG---SCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEE
T ss_pred             CCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEecccccc---chHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEE
Confidence            46888899999999999999754 5899999999753221   13467889999999999999999999998765  679


Q ss_pred             EEEcccCCCCHHhHh
Q 041300          701 LVYEFLERGSLAAIL  715 (716)
Q Consensus       701 lv~Ey~~~GsL~~~l  715 (716)
                      +||||+++|+|.+++
T Consensus        86 lv~e~~~~~~L~~~l  100 (319)
T 4euu_A           86 LIMEFCPCGSLYTVL  100 (319)
T ss_dssp             EEEECCTTCBHHHHH
T ss_pred             EEEeCCCCCCHHHHH
Confidence            999999999999876

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=99.14  E-value=7.1e-11  Score=119.64  Aligned_cols=90  Identities=26%  Similarity=0.474  Sum_probs=78.1

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeCCeeeE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHSFL  701 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~~~~~l  701 (716)
                      .+|...+.||+|+||.||+|... +++.||||++.......  ....++.+|+..+.++ +|||||++++++.+++..++
T Consensus        11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~--~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~l   88 (289)
T 1x8b_A           11 TEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGS--VDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLI   88 (289)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTS--HHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEE
T ss_pred             chhhhhhhhcCCCceEEEEEEEcCCCceEEEEEeccccccc--HHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEE
Confidence            56888999999999999999754 68999999997643222  2456789999999999 99999999999999999999


Q ss_pred             EEcccCCCCHHhHh
Q 041300          702 VYEFLERGSLAAIL  715 (716)
Q Consensus       702 v~Ey~~~GsL~~~l  715 (716)
                      ||||+++|+|.+++
T Consensus        89 v~e~~~~~~L~~~l  102 (289)
T 1x8b_A           89 QNEYCNGGSLADAI  102 (289)
T ss_dssp             EEECCTTCBHHHHH
T ss_pred             EEEecCCCcHHHHH
Confidence            99999999999886

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=99.14  E-value=4.3e-11  Score=123.49  Aligned_cols=87  Identities=30%  Similarity=0.421  Sum_probs=73.6

Q ss_pred             hcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC----e
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ----H  698 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~----~  698 (716)
                      ..+|...++||+|+||+||+|+.. ++.||||++...    . .....+.+|+.++.+++|||||++++++..+.    .
T Consensus        23 ~~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~----~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~   96 (322)
T 3soc_A           23 SMPLQLLEVKARGRFGCVWKAQLL-NEYVAVKIFPIQ----D-KQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVD   96 (322)
T ss_dssp             TEEEEEEEEEECSTTCEEEEEEET-TEEEEEEEECGG----G-HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEE
T ss_pred             hhhchhhheecccCceEEEEEEEC-CCEEEEEEeecC----c-hHHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCce
Confidence            357889999999999999999874 789999998652    1 13355677999999999999999999998754    3


Q ss_pred             eeEEEcccCCCCHHhHh
Q 041300          699 SFLVYEFLERGSLAAIL  715 (716)
Q Consensus       699 ~~lv~Ey~~~GsL~~~l  715 (716)
                      .++|||||++|+|.+++
T Consensus        97 ~~lv~e~~~~g~L~~~l  113 (322)
T 3soc_A           97 LWLITAFHEKGSLSDFL  113 (322)
T ss_dssp             EEEEEECCTTCBHHHHH
T ss_pred             EEEEEecCCCCCHHHHH
Confidence            69999999999999886

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=99.14  E-value=3.1e-11  Score=130.73  Aligned_cols=92  Identities=25%  Similarity=0.364  Sum_probs=78.0

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ++|...+.||+|+||+||+|... +|+.||||++....... ......+.+|+++++.++|||||++++++..++..|+|
T Consensus        16 ~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~-~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv   94 (476)
T 2y94_A           16 GHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRS-LDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMV   94 (476)
T ss_dssp             TTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHH-TTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             cCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccC-HHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence            56888999999999999999754 68999999996532111 11345789999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHhC
Q 041300          703 YEFLERGSLAAILS  716 (716)
Q Consensus       703 ~Ey~~~GsL~~~l~  716 (716)
                      ||||++|+|.+++.
T Consensus        95 ~E~~~gg~L~~~l~  108 (476)
T 2y94_A           95 MEYVSGGELFDYIC  108 (476)
T ss_dssp             EECCSSEEHHHHTT
T ss_pred             EeCCCCCcHHHHHH
Confidence            99999999999873

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=99.14  E-value=3.8e-11  Score=125.28  Aligned_cols=92  Identities=23%  Similarity=0.399  Sum_probs=76.8

Q ss_pred             hcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeCCeee
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHSF  700 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~~~~~  700 (716)
                      .++|...++||+|+||+||+|+.. +++.||||++.+...... ...+.+.+|+.++..+ +|||||++++++.+.+..|
T Consensus        22 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~-~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~  100 (353)
T 3txo_A           22 IDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQD-DDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLF  100 (353)
T ss_dssp             -CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHH-TTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEE
T ss_pred             hhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcch-hHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEE
Confidence            467999999999999999999754 689999999975321111 1345688999999988 7999999999999999999


Q ss_pred             EEEcccCCCCHHhHh
Q 041300          701 LVYEFLERGSLAAIL  715 (716)
Q Consensus       701 lv~Ey~~~GsL~~~l  715 (716)
                      +|||||++|+|.+++
T Consensus       101 lv~E~~~gg~L~~~l  115 (353)
T 3txo_A          101 FVMEFVNGGDLMFHI  115 (353)
T ss_dssp             EEEECCCSCBHHHHH
T ss_pred             EEEeCCCCCcHHHHH
Confidence            999999999999876

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=99.14  E-value=5.4e-11  Score=122.28  Aligned_cols=90  Identities=27%  Similarity=0.504  Sum_probs=77.0

Q ss_pred             hcCCcccccccCCCceEEEEEEc------CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAEL------PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA  696 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~------~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~  696 (716)
                      ..+|...+.||+|+||.||+|..      .++..||||++....   .....+.+.+|++++++++|||||++++++.+.
T Consensus        22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~   98 (314)
T 2ivs_A           22 RKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENA---SPSELRDLLSEFNVLKQVNHPHVIKLYGACSQD   98 (314)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTC---CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSS
T ss_pred             hhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCC---CHHHHHHHHHHHHHHhhCCCCceeeEEEEEecC
Confidence            45688889999999999999964      245789999997532   122456799999999999999999999999999


Q ss_pred             CeeeEEEcccCCCCHHhHh
Q 041300          697 QHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       697 ~~~~lv~Ey~~~GsL~~~l  715 (716)
                      +..++||||+++|+|.+++
T Consensus        99 ~~~~lv~e~~~~~~L~~~l  117 (314)
T 2ivs_A           99 GPLLLIVEYAKYGSLRGFL  117 (314)
T ss_dssp             SSCEEEEECCTTCBHHHHH
T ss_pred             CceEEEEeecCCCCHHHHH
Confidence            9999999999999999886

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=99.13  E-value=3e-11  Score=124.02  Aligned_cols=91  Identities=23%  Similarity=0.322  Sum_probs=76.1

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCe----
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQH----  698 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~----  698 (716)
                      +.|...+.||+|+||.||+++. .+++.||||++........ .....|.+|++++.+++|||||++++++.....    
T Consensus        12 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~-~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~   90 (311)
T 3ork_A           12 DRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDP-SFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL   90 (311)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSH-HHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEE
T ss_pred             CcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCH-HHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCcc
Confidence            5688899999999999999974 5788999999976432222 244679999999999999999999999876543    


Q ss_pred             eeEEEcccCCCCHHhHh
Q 041300          699 SFLVYEFLERGSLAAIL  715 (716)
Q Consensus       699 ~~lv~Ey~~~GsL~~~l  715 (716)
                      .|+||||+++|+|.+++
T Consensus        91 ~~lv~e~~~g~~L~~~l  107 (311)
T 3ork_A           91 PYIVMEYVDGVTLRDIV  107 (311)
T ss_dssp             EEEEEECCCEEEHHHHH
T ss_pred             cEEEEecCCCCCHHHHH
Confidence            39999999999999886

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=99.13  E-value=4.3e-11  Score=126.47  Aligned_cols=92  Identities=22%  Similarity=0.309  Sum_probs=75.9

Q ss_pred             hcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeCCeee
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHSF  700 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~~~~~  700 (716)
                      ..+|...++||+|+||+||+++.. +++.||||++++....... ..+.+.+|+.++.++ +|||||++++++.+++..|
T Consensus        51 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~-~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~  129 (396)
T 4dc2_A           51 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDE-DIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLF  129 (396)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC-----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEE
T ss_pred             hhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHH-HHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEE
Confidence            357889999999999999999754 5789999999764322221 234588899999877 8999999999999999999


Q ss_pred             EEEcccCCCCHHhHh
Q 041300          701 LVYEFLERGSLAAIL  715 (716)
Q Consensus       701 lv~Ey~~~GsL~~~l  715 (716)
                      +|||||++|+|.+++
T Consensus       130 lV~E~~~gg~L~~~l  144 (396)
T 4dc2_A          130 FVIEYVNGGDLMFHM  144 (396)
T ss_dssp             EEEECCTTCBHHHHH
T ss_pred             EEEEcCCCCcHHHHH
Confidence            999999999998876

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=99.13  E-value=3.5e-11  Score=125.06  Aligned_cols=93  Identities=22%  Similarity=0.376  Sum_probs=77.1

Q ss_pred             hhcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeCCee
Q 041300          622 ETNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHS  699 (716)
Q Consensus       622 ~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~~~~  699 (716)
                      ...+|...++||+|+||+||+|+.. +++.||||++.+...... .....+.+|.+++..+ +|||||++++++.+.+..
T Consensus        15 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~-~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~~   93 (345)
T 1xjd_A           15 KIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMD-DDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENL   93 (345)
T ss_dssp             -CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHT-TCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEE
T ss_pred             ChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhh-hhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCEE
Confidence            4567999999999999999999764 588999999975321111 1345678899999877 999999999999999999


Q ss_pred             eEEEcccCCCCHHhHh
Q 041300          700 FLVYEFLERGSLAAIL  715 (716)
Q Consensus       700 ~lv~Ey~~~GsL~~~l  715 (716)
                      |+|||||++|+|.+++
T Consensus        94 ~lv~E~~~gg~L~~~l  109 (345)
T 1xjd_A           94 FFVMEYLNGGDLMYHI  109 (345)
T ss_dssp             EEEEECCTTCBHHHHH
T ss_pred             EEEEeCCCCCcHHHHH
Confidence            9999999999999876

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=99.13  E-value=5.2e-11  Score=121.22  Aligned_cols=88  Identities=36%  Similarity=0.561  Sum_probs=74.5

Q ss_pred             cCCcccccccCCCceEEEEEEc-----CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC--
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-----PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA--  696 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-----~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~--  696 (716)
                      ..|...+.||+|+||.||+|++     .+++.||||++...   . ....+.|.+|++++.+++|||||++++++...  
T Consensus        10 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~---~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~   85 (295)
T 3ugc_A           10 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHS---T-EEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGR   85 (295)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCC---C-HHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHH
T ss_pred             HHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccC---C-HHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCC
Confidence            5688899999999999999974     25789999998753   1 22456799999999999999999999999654  


Q ss_pred             CeeeEEEcccCCCCHHhHh
Q 041300          697 QHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       697 ~~~~lv~Ey~~~GsL~~~l  715 (716)
                      ...++|||||++|+|.+++
T Consensus        86 ~~~~lv~e~~~~~~L~~~l  104 (295)
T 3ugc_A           86 RNLKLIMEYLPYGSLRDYL  104 (295)
T ss_dssp             TSCEEEEECCTTCBHHHHH
T ss_pred             CceEEEEEeCCCCCHHHHH
Confidence            4579999999999999886

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=99.12  E-value=2.8e-11  Score=124.91  Aligned_cols=95  Identities=24%  Similarity=0.451  Sum_probs=79.8

Q ss_pred             HHHHhhcCCcccccccCCCceEEEEEEcC------CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccce
Q 041300          618 EIVRETNDFDAEYCIGNGGHGSVYRAELP------SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG  691 (716)
Q Consensus       618 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~~------~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g  691 (716)
                      ++....++|...+.||+|+||.||+|...      .+..||||++....   .......|.+|++++++++||||+++++
T Consensus        19 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~E~~~l~~l~h~~i~~~~~   95 (322)
T 1p4o_A           19 EWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAA---SMRERIEFLNEASVMKEFNCHHVVRLLG   95 (322)
T ss_dssp             TTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTS---CHHHHHHHHHHHHHGGGCCCTTBCCEEE
T ss_pred             hhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEeccccc---CHHHHHHHHHHHHHHHhcCCCCEeeeEE
Confidence            33445677999999999999999999643      36789999997532   1224467999999999999999999999


Q ss_pred             EEEeCCeeeEEEcccCCCCHHhHh
Q 041300          692 FCSHAQHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       692 ~~~~~~~~~lv~Ey~~~GsL~~~l  715 (716)
                      ++.+++..++||||+++|+|.+++
T Consensus        96 ~~~~~~~~~lv~e~~~~~~L~~~l  119 (322)
T 1p4o_A           96 VVSQGQPTLVIMELMTRGDLKSYL  119 (322)
T ss_dssp             EECSSSSCEEEEECCTTCBHHHHH
T ss_pred             EEccCCccEEEEEeCCCCcHHHHH
Confidence            999989999999999999999886

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=99.12  E-value=2.7e-11  Score=122.92  Aligned_cols=90  Identities=30%  Similarity=0.538  Sum_probs=78.5

Q ss_pred             HhhcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCee
Q 041300          621 RETNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHS  699 (716)
Q Consensus       621 ~~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~  699 (716)
                      ....+|...+.||+|+||.||+|... ++..||||++....     ...+.|.+|++++++++||||+++++++.+++..
T Consensus        10 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-----~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~   84 (288)
T 3kfa_A           10 MERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-----MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPF   84 (288)
T ss_dssp             CCGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCS-----THHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSE
T ss_pred             ccccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCH-----HHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCE
Confidence            34567889999999999999999765 47889999987531     1456799999999999999999999999999999


Q ss_pred             eEEEcccCCCCHHhHh
Q 041300          700 FLVYEFLERGSLAAIL  715 (716)
Q Consensus       700 ~lv~Ey~~~GsL~~~l  715 (716)
                      ++||||+++|+|.+++
T Consensus        85 ~~v~e~~~~~~L~~~~  100 (288)
T 3kfa_A           85 YIITEFMTYGNLLDYL  100 (288)
T ss_dssp             EEEEECCTTEEHHHHH
T ss_pred             EEEEEcCCCCcHHHHH
Confidence            9999999999999886

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=99.12  E-value=4.5e-11  Score=131.43  Aligned_cols=92  Identities=23%  Similarity=0.324  Sum_probs=77.7

Q ss_pred             hcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL  701 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l  701 (716)
                      ..+|...++||+|+||+||+|... +|+.||||++.+...... .....+.+|++++.+++|||||++++++.+.+..|+
T Consensus       183 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~-~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~l  261 (576)
T 2acx_A          183 KNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKR-KGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCL  261 (576)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHT-TCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred             ccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhh-HHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEE
Confidence            456888999999999999999754 689999999965321111 134568899999999999999999999999999999


Q ss_pred             EEcccCCCCHHhHh
Q 041300          702 VYEFLERGSLAAIL  715 (716)
Q Consensus       702 v~Ey~~~GsL~~~l  715 (716)
                      |||||++|+|.+++
T Consensus       262 VmEy~~gg~L~~~l  275 (576)
T 2acx_A          262 VLTLMNGGDLKFHI  275 (576)
T ss_dssp             EECCCCSCBHHHHH
T ss_pred             EEEcCCCCcHHHHH
Confidence            99999999999876

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=99.12  E-value=6.8e-11  Score=122.70  Aligned_cols=90  Identities=24%  Similarity=0.485  Sum_probs=75.9

Q ss_pred             hcCCcccccccCCCceEEEEEEc--------CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEE
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAEL--------PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFC  693 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~--------~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~  693 (716)
                      .++|...+.||+|+||.||+|..        .++..||||++....   .....+.+.+|+++++++ +||||+++++++
T Consensus        34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~  110 (334)
T 2pvf_A           34 RDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDA---TEKDLSDLVSEMEMMKMIGKHKNIINLLGAC  110 (334)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTC---CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             HhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCC---cHHHHHHHHHHHHHHHHhhcCCCEeeEEEEE
Confidence            45788899999999999999975        246789999997532   122456799999999999 899999999999


Q ss_pred             EeCCeeeEEEcccCCCCHHhHh
Q 041300          694 SHAQHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       694 ~~~~~~~lv~Ey~~~GsL~~~l  715 (716)
                      ...+..++||||+++|+|.+++
T Consensus       111 ~~~~~~~lv~e~~~~~~L~~~l  132 (334)
T 2pvf_A          111 TQDGPLYVIVEYASKGNLREYL  132 (334)
T ss_dssp             CSSSCCEEEEECCTTCBHHHHH
T ss_pred             ccCCceEEEEECCCCCcHHHHH
Confidence            9999999999999999999886

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=99.12  E-value=9.9e-11  Score=120.73  Aligned_cols=92  Identities=20%  Similarity=0.274  Sum_probs=78.3

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccc--hhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeee
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQ--IADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSF  700 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~--~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~  700 (716)
                      +.|...+.||+|+||.||+|... +++.||||++........  ....+++.+|++++.+++||||+++++++.+.+..+
T Consensus        12 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   91 (321)
T 2a2a_A           12 DFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTDVV   91 (321)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             ccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEE
Confidence            45888999999999999999754 689999999976432221  113567999999999999999999999999999999


Q ss_pred             EEEcccCCCCHHhHh
Q 041300          701 LVYEFLERGSLAAIL  715 (716)
Q Consensus       701 lv~Ey~~~GsL~~~l  715 (716)
                      +||||+++|+|.+++
T Consensus        92 lv~e~~~~~~L~~~l  106 (321)
T 2a2a_A           92 LILELVSGGELFDFL  106 (321)
T ss_dssp             EEECCCCSCBHHHHH
T ss_pred             EEEEcCCCCcHHHHH
Confidence            999999999999886

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=99.12  E-value=6.5e-11  Score=121.47  Aligned_cols=90  Identities=27%  Similarity=0.454  Sum_probs=74.4

Q ss_pred             hcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      .++|...+.||+|+||+||+|...+++.||||++.......  .....+.+|++++++++|||||++++++.+++..++|
T Consensus        20 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~--~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv   97 (311)
T 3niz_A           20 MEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDE--GIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLV   97 (311)
T ss_dssp             SCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC--------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEE
T ss_pred             HhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccc--hhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEE
Confidence            35788899999999999999988789999999997532211  1346789999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      ||||++ +|.+++
T Consensus        98 ~e~~~~-~l~~~~  109 (311)
T 3niz_A           98 FEFMEK-DLKKVL  109 (311)
T ss_dssp             EECCSE-EHHHHH
T ss_pred             EcCCCC-CHHHHH
Confidence            999985 776654

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=99.12  E-value=1e-10  Score=118.21  Aligned_cols=92  Identities=23%  Similarity=0.342  Sum_probs=78.1

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccc--hhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeee
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQ--IADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSF  700 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~--~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~  700 (716)
                      +.|...+.||+|+||.||++... +++.||||.+........  ....+.+.+|++++++++||||+++++++..++..+
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~   84 (283)
T 3bhy_A            5 DHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDVV   84 (283)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             hhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeEE
Confidence            35888899999999999999765 689999999875432211  113577999999999999999999999999999999


Q ss_pred             EEEcccCCCCHHhHh
Q 041300          701 LVYEFLERGSLAAIL  715 (716)
Q Consensus       701 lv~Ey~~~GsL~~~l  715 (716)
                      +||||+++|+|.+++
T Consensus        85 lv~e~~~~~~L~~~l   99 (283)
T 3bhy_A           85 LILELVSGGELFDFL   99 (283)
T ss_dssp             EEEECCCSCBHHHHH
T ss_pred             EEEeecCCCcHHHHH
Confidence            999999999999876

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=99.12  E-value=7.7e-11  Score=125.37  Aligned_cols=90  Identities=26%  Similarity=0.443  Sum_probs=76.1

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC--eee
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ--HSF  700 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~--~~~  700 (716)
                      ..|...++||+|+||+||+|... +++.||||++......   ...+.+.+|++++++++|||||++++++...+  ..+
T Consensus         9 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~   85 (396)
T 4eut_A            9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFL---RPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKV   85 (396)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGG---SCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEE
T ss_pred             CceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEecccccc---chHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeE
Confidence            46888999999999999999754 5899999999753211   13467889999999999999999999998765  679


Q ss_pred             EEEcccCCCCHHhHhC
Q 041300          701 LVYEFLERGSLAAILS  716 (716)
Q Consensus       701 lv~Ey~~~GsL~~~l~  716 (716)
                      +|||||++|+|.++++
T Consensus        86 lv~e~~~~g~L~~~l~  101 (396)
T 4eut_A           86 LIMEFCPCGSLYTVLE  101 (396)
T ss_dssp             EEECCCTTEEHHHHTT
T ss_pred             EEEecCCCCCHHHHHH
Confidence            9999999999998873

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=99.12  E-value=1.1e-10  Score=118.75  Aligned_cols=91  Identities=22%  Similarity=0.364  Sum_probs=78.0

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ..|...+.||+|+||.||++... +++.||+|++........ ...+.+.+|++++++++|||||++++++.+.+..++|
T Consensus        15 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~-~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv   93 (294)
T 2rku_A           15 RRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKP-HQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV   93 (294)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSH-HHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             cceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCH-HHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEE
Confidence            56888999999999999999754 578999999875432222 2456799999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      |||+++|+|.+++
T Consensus        94 ~e~~~~~~L~~~~  106 (294)
T 2rku_A           94 LELCRRRSLLELH  106 (294)
T ss_dssp             EECCTTCBHHHHH
T ss_pred             EecCCCCCHHHHH
Confidence            9999999998875

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=99.12  E-value=4.7e-11  Score=120.44  Aligned_cols=88  Identities=23%  Similarity=0.463  Sum_probs=76.0

Q ss_pred             hcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ...|...+.||+|+||.||+|...++..||||++.....     ..+.|.+|++++++++||||+++++++. .+..++|
T Consensus        12 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~-----~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v   85 (279)
T 1qpc_A           12 RETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSM-----SPDAFLAEANLMKQLQHQRLVRLYAVVT-QEPIYII   85 (279)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSS-----CHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEE
T ss_pred             HHhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCcc-----cHHHHHHHHHHHHhCCCcCcceEEEEEc-CCCcEEE
Confidence            356888999999999999999987788999999875321     3467999999999999999999999985 4568999


Q ss_pred             EcccCCCCHHhHhC
Q 041300          703 YEFLERGSLAAILS  716 (716)
Q Consensus       703 ~Ey~~~GsL~~~l~  716 (716)
                      |||+++|+|.++++
T Consensus        86 ~e~~~~~~L~~~l~   99 (279)
T 1qpc_A           86 TEYMENGSLVDFLK   99 (279)
T ss_dssp             EECCTTCBHHHHTT
T ss_pred             EecCCCCCHHHHHh
Confidence            99999999999873

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=99.11  E-value=7.3e-11  Score=118.85  Aligned_cols=91  Identities=26%  Similarity=0.374  Sum_probs=77.3

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ++|...+.||+|+||.||+|... +++.||||++...... .....+.+.+|++++++++||||+++++++..++..++|
T Consensus        11 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   89 (276)
T 2h6d_A           11 GHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIR-SLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMV   89 (276)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHH-HTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             ccEEEEeeecCCCCeEEEEEEECCCCceEEEEEecccccc-chhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEE
Confidence            56888999999999999999764 6899999998652111 111345789999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      |||+++|+|.+++
T Consensus        90 ~e~~~~~~L~~~l  102 (276)
T 2h6d_A           90 MEYVSGGELFDYI  102 (276)
T ss_dssp             EECCCSCBHHHHH
T ss_pred             EeccCCCcHHHHH
Confidence            9999999999876

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=99.11  E-value=5.6e-11  Score=122.09  Aligned_cols=90  Identities=26%  Similarity=0.466  Sum_probs=77.3

Q ss_pred             hcCCcccccccCCCceEEEEEEc------CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEe
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAEL------PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSH  695 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~------~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~  695 (716)
                      ...|...+.||+|+||.||+|..      .+++.||||++....   .....+.+.+|++++.++ +|||||++++++..
T Consensus        22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~   98 (313)
T 1t46_A           22 RNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSA---HLTEREALMSELKVLSYLGNHMNIVNLLGACTI   98 (313)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTC---CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred             hhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcch---hHHHHHHHHHHHHHHhhcccCCCeeeEEEEEec
Confidence            45788899999999999999974      346789999997532   112456799999999999 99999999999999


Q ss_pred             CCeeeEEEcccCCCCHHhHh
Q 041300          696 AQHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       696 ~~~~~lv~Ey~~~GsL~~~l  715 (716)
                      ++..++||||+++|+|.+++
T Consensus        99 ~~~~~lv~e~~~~~~L~~~l  118 (313)
T 1t46_A           99 GGPTLVITEYCCYGDLLNFL  118 (313)
T ss_dssp             SSSCEEEEECCTTEEHHHHH
T ss_pred             CCCcEEEEecCCCCCHHHHH
Confidence            99999999999999999886

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=99.11  E-value=5.3e-11  Score=120.12  Aligned_cols=92  Identities=26%  Similarity=0.457  Sum_probs=76.9

Q ss_pred             hcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL  701 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l  701 (716)
                      .++|...+.||+|+||.||+|... ++..||||++...... .......+.+|++++++++||||+++++++.+.+..++
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   86 (279)
T 3fdn_A            8 LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLE-KAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYL   86 (279)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHH-HHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEE
T ss_pred             cccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEE
Confidence            357888999999999999999654 5789999998652211 11124578999999999999999999999999999999


Q ss_pred             EEcccCCCCHHhHh
Q 041300          702 VYEFLERGSLAAIL  715 (716)
Q Consensus       702 v~Ey~~~GsL~~~l  715 (716)
                      ||||+++|+|.+++
T Consensus        87 v~e~~~~~~l~~~l  100 (279)
T 3fdn_A           87 ILEYAPLGTVYREL  100 (279)
T ss_dssp             EECCCTTEEHHHHH
T ss_pred             EEecCCCCcHHHHH
Confidence            99999999998875

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=99.11  E-value=1.2e-10  Score=117.72  Aligned_cols=91  Identities=20%  Similarity=0.346  Sum_probs=77.6

Q ss_pred             hcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL  701 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l  701 (716)
                      .++|...+.||+|+||.||+|.. .+++.||||++......  ....+.+.+|++++++++||||+++++++..++..++
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   82 (284)
T 3kk8_A            5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLS--ARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYL   82 (284)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCC--HHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred             hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCC--HHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEE
Confidence            35788899999999999999965 46889999999753321  1234678999999999999999999999999999999


Q ss_pred             EEcccCCCCHHhHh
Q 041300          702 VYEFLERGSLAAIL  715 (716)
Q Consensus       702 v~Ey~~~GsL~~~l  715 (716)
                      ||||+++|+|.+++
T Consensus        83 v~e~~~~~~l~~~~   96 (284)
T 3kk8_A           83 VFDLVTGGELFEDI   96 (284)
T ss_dssp             EECCCCSCBHHHHH
T ss_pred             EEecCCCCCHHHHH
Confidence            99999999998765

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=99.11  E-value=1.4e-10  Score=119.82  Aligned_cols=80  Identities=28%  Similarity=0.351  Sum_probs=70.9

Q ss_pred             cccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCC-CCCccccceEEEeCCeeeEEEccc
Q 041300          629 EYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR-HRNIVKFYGFCSHAQHSFLVYEFL  706 (716)
Q Consensus       629 ~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~-H~niv~l~g~~~~~~~~~lv~Ey~  706 (716)
                      .+.||+|+||.||+|... +++.||||++...       ....+.+|++++..++ |||||++++++.+++..|+|||||
T Consensus        16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-------~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~   88 (325)
T 3kn6_A           16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKR-------MEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELL   88 (325)
T ss_dssp             SCCSEEETTEEEEEEEETTTCCEEEEEEEEGG-------GHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCC
T ss_pred             CCccccCCCeEEEEEEECCCCCEEEEEEEChh-------hhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEcc
Confidence            478999999999999754 6899999998652       3456889999999997 999999999999999999999999


Q ss_pred             CCCCHHhHh
Q 041300          707 ERGSLAAIL  715 (716)
Q Consensus       707 ~~GsL~~~l  715 (716)
                      ++|+|.+++
T Consensus        89 ~~~~L~~~l   97 (325)
T 3kn6_A           89 NGGELFERI   97 (325)
T ss_dssp             CSCBHHHHH
T ss_pred             CCCcHHHHH
Confidence            999999876

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=99.11  E-value=7.2e-11  Score=124.93  Aligned_cols=90  Identities=26%  Similarity=0.456  Sum_probs=76.3

Q ss_pred             hcCCcccccccCCCceEEEEEEcC--------CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEE
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELP--------SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFC  693 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~--------~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~  693 (716)
                      .+.|...+.||+|+||.||+|+..        .+..||||++....   .....+++.+|+++++++ +|||||++++++
T Consensus        68 ~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~  144 (382)
T 3tt0_A           68 RDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDA---TEKDLSDLISEMEMMKMIGKHKNIINLLGAC  144 (382)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTC---CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             hhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeecccc---CHHHHHHHHHHHHHHHHhcCCchhhhheeee
Confidence            356888899999999999999741        23579999997632   122456799999999999 999999999999


Q ss_pred             EeCCeeeEEEcccCCCCHHhHh
Q 041300          694 SHAQHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       694 ~~~~~~~lv~Ey~~~GsL~~~l  715 (716)
                      ..++..++||||+++|+|.+++
T Consensus       145 ~~~~~~~lv~e~~~~g~L~~~l  166 (382)
T 3tt0_A          145 TQDGPLYVIVEYASKGNLREYL  166 (382)
T ss_dssp             CSSSSCEEEEECCTTCBHHHHH
T ss_pred             ccCCceEEEEEecCCCcHHHHH
Confidence            9999999999999999999986

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=99.11  E-value=1.2e-10  Score=120.78  Aligned_cols=92  Identities=22%  Similarity=0.359  Sum_probs=78.5

Q ss_pred             hcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL  701 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l  701 (716)
                      ...|...+.||+|+||.||++... +++.||+|++........ ...+.+.+|++++++++|||||++++++.+.+..|+
T Consensus        40 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l  118 (335)
T 2owb_A           40 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKP-HQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFV  118 (335)
T ss_dssp             TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSH-HHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE
T ss_pred             CCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCH-HHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEE
Confidence            356888999999999999999754 578999999875432222 245679999999999999999999999999999999


Q ss_pred             EEcccCCCCHHhHh
Q 041300          702 VYEFLERGSLAAIL  715 (716)
Q Consensus       702 v~Ey~~~GsL~~~l  715 (716)
                      |||||++|+|.+++
T Consensus       119 v~e~~~~~~L~~~~  132 (335)
T 2owb_A          119 VLELCRRRSLLELH  132 (335)
T ss_dssp             EECCCTTCBHHHHH
T ss_pred             EEecCCCCCHHHHH
Confidence            99999999998875

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=99.11  E-value=4e-11  Score=124.10  Aligned_cols=90  Identities=21%  Similarity=0.309  Sum_probs=75.2

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ++|...+.||+|+||+||+|.. .+++.||||++........ .....+.+|+++++.++|||||++++++..++..++|
T Consensus         9 ~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~-~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv   87 (336)
T 3h4j_B            9 GPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKS-DMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMV   87 (336)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHT-TCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             CCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccch-hHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence            5788899999999999999974 5789999999864211111 1235689999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      |||+ +|+|.+++
T Consensus        88 ~E~~-~g~l~~~l   99 (336)
T 3h4j_B           88 IEYA-GGELFDYI   99 (336)
T ss_dssp             ECCC-CEEHHHHH
T ss_pred             EECC-CCcHHHHH
Confidence            9999 78998875

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=99.10  E-value=1e-10  Score=128.09  Aligned_cols=91  Identities=27%  Similarity=0.435  Sum_probs=78.5

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ..|...++||+|+||.||+|... +++.||||++........ .....+.+|++++++++|||||++++++.+.+..++|
T Consensus        26 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv  104 (484)
T 3nyv_A           26 DRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQK-TDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLV  104 (484)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBS-SCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             CceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccc-hHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEE
Confidence            45888999999999999999754 689999999975433222 2457799999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      ||||++|+|.+++
T Consensus       105 ~e~~~~~~L~~~~  117 (484)
T 3nyv_A          105 GEVYTGGELFDEI  117 (484)
T ss_dssp             ECCCCSCBHHHHH
T ss_pred             EecCCCCCHHHHH
Confidence            9999999998875

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=99.10  E-value=1.2e-10  Score=122.25  Aligned_cols=89  Identities=31%  Similarity=0.465  Sum_probs=77.9

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ++|...+.||+|+||.||++... ++..||+|++....   .....+.+.+|++++.+++|||||++++++..++..++|
T Consensus        33 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv  109 (360)
T 3eqc_A           33 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEI---KPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISIC  109 (360)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCC---CHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEE
T ss_pred             ccceeeeeecCCCCeEEEEEEECCCCcEEEEEEecccc---CHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEE
Confidence            46888999999999999999754 68899999997632   122456799999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      ||||++|+|.+++
T Consensus       110 ~e~~~~~~L~~~l  122 (360)
T 3eqc_A          110 MEHMDGGSLDQVL  122 (360)
T ss_dssp             ECCCTTCBHHHHH
T ss_pred             EECCCCCCHHHHH
Confidence            9999999999876

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=99.10  E-value=1.3e-10  Score=127.69  Aligned_cols=93  Identities=23%  Similarity=0.290  Sum_probs=74.8

Q ss_pred             hcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccc---------hhhHHHHHHHHHHHhcCCCCCccccceE
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQ---------IADQKEFLTEVQALTEIRHRNIVKFYGF  692 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~---------~~~~~~~~~ei~~l~~l~H~niv~l~g~  692 (716)
                      ...|...++||+|+||+||+|... ++..||||++........         ....+++.+|++++++++|||||+++++
T Consensus        35 ~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~  114 (504)
T 3q5i_A           35 GESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDV  114 (504)
T ss_dssp             GGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred             ccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEEE
Confidence            457889999999999999999754 578999999975432110         0134678999999999999999999999


Q ss_pred             EEeCCeeeEEEcccCCCCHHhHh
Q 041300          693 CSHAQHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       693 ~~~~~~~~lv~Ey~~~GsL~~~l  715 (716)
                      +.+++..++|||||++|+|.+++
T Consensus       115 ~~~~~~~~lv~e~~~gg~L~~~l  137 (504)
T 3q5i_A          115 FEDKKYFYLVTEFYEGGELFEQI  137 (504)
T ss_dssp             EECSSEEEEEEECCTTCBHHHHH
T ss_pred             EEcCCEEEEEEecCCCCcHHHHH
Confidence            99999999999999999998875

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=99.10  E-value=1.2e-10  Score=119.44  Aligned_cols=92  Identities=21%  Similarity=0.350  Sum_probs=78.5

Q ss_pred             hcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL  701 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l  701 (716)
                      .++|...+.||+|+||.||+|... +++.||||++........ ...+.+.+|++++.+++||||+++++++..++..|+
T Consensus        33 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~-~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~l  111 (309)
T 2h34_A           33 FGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDP-VFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYV  111 (309)
T ss_dssp             -CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSH-HHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEE
T ss_pred             eccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCH-HHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEE
Confidence            367999999999999999999754 688999999975322221 234679999999999999999999999999999999


Q ss_pred             EEcccCCCCHHhHh
Q 041300          702 VYEFLERGSLAAIL  715 (716)
Q Consensus       702 v~Ey~~~GsL~~~l  715 (716)
                      ||||+++|+|.+++
T Consensus       112 v~e~~~~~~L~~~l  125 (309)
T 2h34_A          112 DMRLINGVDLAAML  125 (309)
T ss_dssp             EEECCCCEEHHHHH
T ss_pred             EEEecCCCCHHHHH
Confidence            99999999999876

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=99.10  E-value=6.2e-11  Score=119.50  Aligned_cols=92  Identities=25%  Similarity=0.444  Sum_probs=77.5

Q ss_pred             hcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL  701 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l  701 (716)
                      .++|...+.||+|+||.||+|.. .+++.||||++....... ....+.+.+|++++.+++||||+++++++.+.+..++
T Consensus        10 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   88 (278)
T 3cok_A           10 IEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYK-AGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYL   88 (278)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHH-TTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEE
T ss_pred             cccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhh-hhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEE
Confidence            35688899999999999999975 578999999986421111 1124678999999999999999999999999999999


Q ss_pred             EEcccCCCCHHhHh
Q 041300          702 VYEFLERGSLAAIL  715 (716)
Q Consensus       702 v~Ey~~~GsL~~~l  715 (716)
                      ||||+++|+|.+++
T Consensus        89 v~e~~~~~~L~~~l  102 (278)
T 3cok_A           89 VLEMCHNGEMNRYL  102 (278)
T ss_dssp             EEECCTTEEHHHHH
T ss_pred             EEecCCCCcHHHHH
Confidence            99999999999876

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=99.10  E-value=8.2e-11  Score=119.34  Aligned_cols=88  Identities=23%  Similarity=0.440  Sum_probs=75.3

Q ss_pred             cCCcccccccCCCceEEEEEEcCC-C-------CEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEe
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELPS-G-------EVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSH  695 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~~-~-------~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~  695 (716)
                      ++|...+.||+|+||.||+|.... +       ..||+|++....    ....+.|.+|++++++++|||||++++++..
T Consensus         8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~----~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~   83 (289)
T 4fvq_A            8 EDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAH----RNYSESFFEAASMMSKLSHKHLVLNYGVCVC   83 (289)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGG----GGGHHHHHHHHHHHHTSCCTTBCCEEEEECC
T ss_pred             hHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhccccc----HHHHHHHHHHHHHHHhCCCCCEeEEEEEEEe
Confidence            468888999999999999996432 3       479999986531    1245779999999999999999999999999


Q ss_pred             CCeeeEEEcccCCCCHHhHh
Q 041300          696 AQHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       696 ~~~~~lv~Ey~~~GsL~~~l  715 (716)
                      ++..++||||+++|+|.+++
T Consensus        84 ~~~~~lv~e~~~~~~L~~~l  103 (289)
T 4fvq_A           84 GDENILVQEFVKFGSLDTYL  103 (289)
T ss_dssp             TTCCEEEEECCTTCBHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHH
Confidence            99999999999999999886

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=99.10  E-value=1.7e-10  Score=118.73  Aligned_cols=88  Identities=28%  Similarity=0.427  Sum_probs=74.2

Q ss_pred             CCcccccccCCCceEEEEEEcC-----CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC--C
Q 041300          625 DFDAEYCIGNGGHGSVYRAELP-----SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA--Q  697 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~~-----~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~--~  697 (716)
                      .|...+.||+|+||+||++.+.     +++.||||++....   .....+.|.+|++++++++|||||++++++.+.  .
T Consensus        32 ~~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~  108 (318)
T 3lxp_A           32 YLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADA---GPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAA  108 (318)
T ss_dssp             GEEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTC---CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTT
T ss_pred             HHhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEecccc---ChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCc
Confidence            3578889999999999998653     57889999997632   122456799999999999999999999999884  5


Q ss_pred             eeeEEEcccCCCCHHhHh
Q 041300          698 HSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       698 ~~~lv~Ey~~~GsL~~~l  715 (716)
                      ..++||||+++|+|.+++
T Consensus       109 ~~~lv~e~~~~~~L~~~l  126 (318)
T 3lxp_A          109 SLQLVMEYVPLGSLRDYL  126 (318)
T ss_dssp             EEEEEECCCTTCBHHHHG
T ss_pred             eEEEEEecccCCcHHHHH
Confidence            679999999999999886

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=99.10  E-value=1.3e-10  Score=117.12  Aligned_cols=88  Identities=25%  Similarity=0.345  Sum_probs=76.6

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      +.|...+.||+|+||.||+|... ++..||+|++......    ..+.+.+|++++.+++||||+++++++.+++..++|
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~----~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv   84 (277)
T 3f3z_A            9 QYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVE----DVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLV   84 (277)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCS----CHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccc----hHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEE
Confidence            46888999999999999999754 5779999998753221    346799999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      |||+++|+|.+++
T Consensus        85 ~e~~~~~~L~~~~   97 (277)
T 3f3z_A           85 MELCTGGELFERV   97 (277)
T ss_dssp             EECCCSCBHHHHH
T ss_pred             EeccCCCcHHHHH
Confidence            9999999998875

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=99.10  E-value=9.8e-11  Score=128.40  Aligned_cols=90  Identities=23%  Similarity=0.351  Sum_probs=72.9

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ..|...+.||+|+||.||+|... ++..||||++........  ....+.+|++++++++|||||++++++.+.+..|+|
T Consensus        37 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~--~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv  114 (494)
T 3lij_A           37 EMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTS--SNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLV  114 (494)
T ss_dssp             HHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----C--TTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             cCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCch--HHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence            45888999999999999999754 688999999976432211  346789999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      ||||++|+|.+++
T Consensus       115 ~e~~~~g~L~~~~  127 (494)
T 3lij_A          115 MECYKGGELFDEI  127 (494)
T ss_dssp             EECCCSCBHHHHH
T ss_pred             EecCCCCcHHHHH
Confidence            9999999998765

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=99.09  E-value=1.1e-10  Score=120.11  Aligned_cols=89  Identities=25%  Similarity=0.443  Sum_probs=62.6

Q ss_pred             hcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL  701 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l  701 (716)
                      ..+|...+.||+|+||.||+|... +++.||||++.......   ..+.+.+|++++++++|||||++++++..++..++
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~---~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~l   80 (317)
T 2pmi_A            4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEG---TPSTAIREISLMKELKHENIVRLYDVIHTENKLTL   80 (317)
T ss_dssp             ---------------CEEEEEECSSSCCEEEEEEEECCSTTC---SCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEE
T ss_pred             ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccc---cHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEE
Confidence            356888899999999999999754 58999999997532111   23568899999999999999999999999999999


Q ss_pred             EEcccCCCCHHhHh
Q 041300          702 VYEFLERGSLAAIL  715 (716)
Q Consensus       702 v~Ey~~~GsL~~~l  715 (716)
                      |||||+ |+|.+++
T Consensus        81 v~e~~~-~~L~~~l   93 (317)
T 2pmi_A           81 VFEFMD-NDLKKYM   93 (317)
T ss_dssp             EEECCC-CBHHHHH
T ss_pred             EEEecC-CCHHHHH
Confidence            999999 5898875

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=99.09  E-value=1.1e-10  Score=120.87  Aligned_cols=90  Identities=28%  Similarity=0.497  Sum_probs=74.5

Q ss_pred             hcCCcccccccCCCceEEEEEEc------CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAEL------PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA  696 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~------~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~  696 (716)
                      ..+|...+.||+|+||.||+|..      .++..||||++....   ......+|.+|+.++++++||||+++++++...
T Consensus        29 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~  105 (327)
T 2yfx_A           29 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVC---SEQDELDFLMEALIISKFNHQNIVRCIGVSLQS  105 (327)
T ss_dssp             GGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSC---CHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             hhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEecccc---chhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCC
Confidence            45788999999999999999974      246789999996432   122456799999999999999999999999998


Q ss_pred             CeeeEEEcccCCCCHHhHh
Q 041300          697 QHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       697 ~~~~lv~Ey~~~GsL~~~l  715 (716)
                      +..|+||||+++|+|.+++
T Consensus       106 ~~~~lv~e~~~~~~L~~~l  124 (327)
T 2yfx_A          106 LPRFILMELMAGGDLKSFL  124 (327)
T ss_dssp             SSCEEEEECCTTEEHHHHH
T ss_pred             CCcEEEEecCCCCcHHHHH
Confidence            8999999999999999886

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.09  E-value=1.5e-08  Score=106.87  Aligned_cols=82  Identities=4%  Similarity=0.009  Sum_probs=43.8

Q ss_pred             CCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcccccCccCCCccccCCCCCc
Q 041300           72 FSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIE  151 (716)
Q Consensus        72 f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  151 (716)
                      |....+|+.+.+.. .++.+...+|.++.+|+.++|..+ ++.+...+|.+. +|+.+.+..+ +..+...+|.. .+|+
T Consensus        42 ~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~  116 (379)
T 4h09_A           42 YKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLD  116 (379)
T ss_dssp             GGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCS
T ss_pred             cccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcc
Confidence            44445666666653 355555566666677777766543 444445556655 4555555433 33333334443 2566


Q ss_pred             eeecccc
Q 041300          152 ELFLYSN  158 (716)
Q Consensus       152 ~L~L~~N  158 (716)
                      .+.+..+
T Consensus       117 ~i~lp~~  123 (379)
T 4h09_A          117 DFEFPGA  123 (379)
T ss_dssp             EEECCTT
T ss_pred             cccCCCc
Confidence            6666543

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=99.09  E-value=1.5e-10  Score=118.25  Aligned_cols=89  Identities=30%  Similarity=0.451  Sum_probs=73.0

Q ss_pred             cCCcccccccCCCceEEEEEEc-----CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC--
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-----PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA--  696 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-----~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~--  696 (716)
                      ..|...+.||+|+||.||+|.+     .+++.||||++......   ...+.+.+|++++.+++||||+++++++...  
T Consensus        21 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~---~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~   97 (302)
T 4e5w_A           21 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGG---NHIADLKKEIEILRNLYHENIVKYKGICTEDGG   97 (302)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC--------CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---
T ss_pred             hhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccc---hhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCC
Confidence            3578889999999999999984     35789999999753211   1346799999999999999999999999876  


Q ss_pred             CeeeEEEcccCCCCHHhHh
Q 041300          697 QHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       697 ~~~~lv~Ey~~~GsL~~~l  715 (716)
                      +..++||||+++|+|.+++
T Consensus        98 ~~~~lv~e~~~~~~L~~~l  116 (302)
T 4e5w_A           98 NGIKLIMEFLPSGSLKEYL  116 (302)
T ss_dssp             CCEEEEEECCTTCBHHHHH
T ss_pred             ceEEEEEEeCCCCcHHHHH
Confidence            5689999999999999886

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=99.09  E-value=1.3e-10  Score=121.05  Aligned_cols=90  Identities=31%  Similarity=0.464  Sum_probs=75.0

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ..|...+.||+|+||.||+|.. .+++.||||++........ ...++|.+|++++++++|||||++++++..++..++|
T Consensus        54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv  132 (348)
T 1u5q_A           54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSN-EKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLV  132 (348)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHH-HHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred             hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccch-HHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEE
Confidence            3478888999999999999974 5789999999975432222 2346799999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      ||||+ |+|.+++
T Consensus       133 ~e~~~-g~l~~~l  144 (348)
T 1u5q_A          133 MEYCL-GSASDLL  144 (348)
T ss_dssp             EECCS-EEHHHHH
T ss_pred             EecCC-CCHHHHH
Confidence            99998 6777664

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=99.09  E-value=7.8e-11  Score=120.66  Aligned_cols=83  Identities=36%  Similarity=0.663  Sum_probs=72.1

Q ss_pred             cCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      .+|...+.||+|+||.||+|+. .++.||||++...      ...+.|.+|++++++++|||||+++|++.  +..++||
T Consensus         8 ~~~~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~--~~~~lv~   78 (307)
T 2eva_A            8 KEIEVEEVVGRGAFGVVCKAKW-RAKDVAIKQIESE------SERKAFIVELRQLSRVNHPNIVKLYGACL--NPVCLVM   78 (307)
T ss_dssp             GGEEEEEEEECCSSSEEEEEEE-TTEEEEEEECSST------THHHHHHHHHHHHHHCCCTTBCCEEEBCT--TTTEEEE
T ss_pred             hHeeeeeEeecCCCceEEEEEE-CCeeEEEEEecCh------hHHHHHHHHHHHHhcCCCCCcCeEEEEEc--CCcEEEE
Confidence            4678889999999999999987 4788999998642      14567999999999999999999999886  4589999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      ||+++|+|.+++
T Consensus        79 e~~~~~~L~~~l   90 (307)
T 2eva_A           79 EYAEGGSLYNVL   90 (307)
T ss_dssp             ECCTTCBHHHHH
T ss_pred             EcCCCCCHHHHH
Confidence            999999999886

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=99.09  E-value=8.1e-11  Score=129.04  Aligned_cols=91  Identities=20%  Similarity=0.298  Sum_probs=77.1

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      .+|...++||+|+||+||+++.. +|+.||||++.+...... ...+.+.+|++++.+++|||||++++++.+.+..|+|
T Consensus       185 ~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~-~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV  263 (543)
T 3c4z_A          185 DWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKR-KGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLV  263 (543)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHT-TCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhh-HHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEE
Confidence            56888889999999999999764 689999999965321111 1345789999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      ||||++|+|.+++
T Consensus       264 mE~~~gg~L~~~l  276 (543)
T 3c4z_A          264 MTIMNGGDIRYHI  276 (543)
T ss_dssp             ECCCTTCBHHHHH
T ss_pred             EEeccCCCHHHHH
Confidence            9999999998876

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=99.09  E-value=7.1e-11  Score=124.08  Aligned_cols=91  Identities=23%  Similarity=0.331  Sum_probs=68.5

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHH-HhcCCCCCccccceEEEeCCeeeE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQA-LTEIRHRNIVKFYGFCSHAQHSFL  701 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~-l~~l~H~niv~l~g~~~~~~~~~l  701 (716)
                      .+|...++||+|+||+||+++.. +++.||||++.+....... ....+.+|..+ ++.++|||||++++++.+.+..|+
T Consensus        38 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~-~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~l  116 (373)
T 2r5t_A           38 SDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKK-EEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYF  116 (373)
T ss_dssp             GGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC--------------CCBCCCCCTTBCCEEEEEECSSEEEE
T ss_pred             hheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhH-HHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEE
Confidence            56889999999999999999754 5889999999764322221 33456777776 577899999999999999999999


Q ss_pred             EEcccCCCCHHhHh
Q 041300          702 VYEFLERGSLAAIL  715 (716)
Q Consensus       702 v~Ey~~~GsL~~~l  715 (716)
                      |||||++|+|.+++
T Consensus       117 v~E~~~gg~L~~~l  130 (373)
T 2r5t_A          117 VLDYINGGELFYHL  130 (373)
T ss_dssp             EEECCCSCBHHHHH
T ss_pred             EEeCCCCCcHHHHH
Confidence            99999999998876

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=99.09  E-value=8.1e-11  Score=122.71  Aligned_cols=92  Identities=24%  Similarity=0.456  Sum_probs=76.3

Q ss_pred             HhhcCCcccccccCCCceEEEEEEc------CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEE
Q 041300          621 RETNDFDAEYCIGNGGHGSVYRAEL------PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFC  693 (716)
Q Consensus       621 ~~~~~~~~~~~ig~g~~g~v~~~~~------~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~  693 (716)
                      ....+|...+.||+|+||.||+|..      .++..||||++.....   ....+.+.+|++++.++ +||||+++++++
T Consensus        42 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~  118 (344)
T 1rjb_A           42 FPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKAD---SSEREALMSELKMMTQLGSHENIVNLLGAC  118 (344)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC---------CHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             cCHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccC---HHHHHHHHHHHHHHHhhcCCCCeeeEEEEE
Confidence            3456788999999999999999974      2356899999975321   11346799999999999 899999999999


Q ss_pred             EeCCeeeEEEcccCCCCHHhHh
Q 041300          694 SHAQHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       694 ~~~~~~~lv~Ey~~~GsL~~~l  715 (716)
                      ...+..++||||+++|+|.+++
T Consensus       119 ~~~~~~~lv~e~~~~g~L~~~l  140 (344)
T 1rjb_A          119 TLSGPIYLIFEYCCYGDLLNYL  140 (344)
T ss_dssp             CSSSSCEEEEECCTTCBHHHHH
T ss_pred             eeCCccEEEEecCCCCcHHHHH
Confidence            9999999999999999999886

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=99.09  E-value=1.6e-10  Score=116.47  Aligned_cols=91  Identities=26%  Similarity=0.525  Sum_probs=76.6

Q ss_pred             hcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEe--CCee
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSH--AQHS  699 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~--~~~~  699 (716)
                      .++|...+.||+|+||.||++... +++.||||++......  ....+.+.+|++++++++||||+++++++..  .+..
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   82 (279)
T 2w5a_A            5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMT--EAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTL   82 (279)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCC--HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEE
T ss_pred             hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCC--HHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceE
Confidence            357888999999999999999754 6899999999754321  1245679999999999999999999998865  5678


Q ss_pred             eEEEcccCCCCHHhHh
Q 041300          700 FLVYEFLERGSLAAIL  715 (716)
Q Consensus       700 ~lv~Ey~~~GsL~~~l  715 (716)
                      ++||||+++|+|.+++
T Consensus        83 ~lv~e~~~~~~L~~~l   98 (279)
T 2w5a_A           83 YIVMEYCEGGDLASVI   98 (279)
T ss_dssp             EEEEECCTTEEHHHHH
T ss_pred             EEEEeCCCCCCHHHHH
Confidence            9999999999999886

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=99.08  E-value=2.6e-10  Score=117.24  Aligned_cols=87  Identities=23%  Similarity=0.357  Sum_probs=73.9

Q ss_pred             CCcc-cccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeCCeeeE
Q 041300          625 DFDA-EYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHSFL  701 (716)
Q Consensus       625 ~~~~-~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~~~~~l  701 (716)
                      .|.. .++||+|+||+||+|.. .+++.||||++.....    .....+.+|++++.++ +|||||++++++.+++..++
T Consensus        13 ~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~----~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~l   88 (316)
T 2ac3_A           13 VYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPG----HIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYL   88 (316)
T ss_dssp             SCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSS----CCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEE
T ss_pred             eEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcc----hhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEE
Confidence            4555 47899999999999974 4689999999975321    1346789999999985 79999999999999999999


Q ss_pred             EEcccCCCCHHhHh
Q 041300          702 VYEFLERGSLAAIL  715 (716)
Q Consensus       702 v~Ey~~~GsL~~~l  715 (716)
                      |||||++|+|.+++
T Consensus        89 v~e~~~~~~L~~~l  102 (316)
T 2ac3_A           89 VFEKMRGGSILSHI  102 (316)
T ss_dssp             EEECCTTCBHHHHH
T ss_pred             EEEcCCCCcHHHHH
Confidence            99999999999876

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=99.08  E-value=1e-10  Score=118.63  Aligned_cols=89  Identities=30%  Similarity=0.482  Sum_probs=75.3

Q ss_pred             cCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      ++|...+.||+|+||.||+|+..+++.||||++.......  ...+.+.+|++++++++|||||++++++..++..++||
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~   79 (288)
T 1ob3_A            2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDE--GIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVF   79 (288)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGG--CCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEE
T ss_pred             ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEecccccc--ccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEE
Confidence            3678889999999999999987779999999997532211  12367889999999999999999999999999999999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      ||+++ +|.+++
T Consensus        80 e~~~~-~l~~~~   90 (288)
T 1ob3_A           80 EHLDQ-DLKKLL   90 (288)
T ss_dssp             ECCSE-EHHHHH
T ss_pred             EecCC-CHHHHH
Confidence            99986 887765

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=99.08  E-value=9.8e-11  Score=119.39  Aligned_cols=93  Identities=22%  Similarity=0.333  Sum_probs=71.3

Q ss_pred             hcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccc----------------------hhhHHHHHHHHHHHh
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQ----------------------IADQKEFLTEVQALT  679 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~----------------------~~~~~~~~~ei~~l~  679 (716)
                      .++|...+.||+|+||.||+|.. .+++.||||++........                      ....+.+.+|+++++
T Consensus        12 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~   91 (298)
T 2zv2_A           12 LNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILK   91 (298)
T ss_dssp             ETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHH
T ss_pred             ecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHH
Confidence            35788999999999999999964 4688999999975321110                      001246899999999


Q ss_pred             cCCCCCccccceEEEe--CCeeeEEEcccCCCCHHhHh
Q 041300          680 EIRHRNIVKFYGFCSH--AQHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       680 ~l~H~niv~l~g~~~~--~~~~~lv~Ey~~~GsL~~~l  715 (716)
                      +++|||||++++++.+  .+..++||||+++|+|.+++
T Consensus        92 ~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~  129 (298)
T 2zv2_A           92 KLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVP  129 (298)
T ss_dssp             TCCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSS
T ss_pred             hCCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHh
Confidence            9999999999999987  56789999999999987653

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=99.08  E-value=1.5e-10  Score=119.44  Aligned_cols=92  Identities=29%  Similarity=0.503  Sum_probs=69.0

Q ss_pred             hhcCCcccccccCCCceEEEEEEcCC-C---CEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC
Q 041300          622 ETNDFDAEYCIGNGGHGSVYRAELPS-G---EVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ  697 (716)
Q Consensus       622 ~~~~~~~~~~ig~g~~g~v~~~~~~~-~---~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~  697 (716)
                      ...+|...+.||+|+||.||+|.... +   ..||||++.......  ...++|.+|++++++++|||||++++++....
T Consensus        21 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~--~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~   98 (323)
T 3qup_A           21 PEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIAS--SDIEEFLREAACMKEFDHPHVAKLVGVSLRSR   98 (323)
T ss_dssp             C---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------C--HHHHHHHHHHHHHTTCCCTTBCCCCEEEECC-
T ss_pred             ChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCH--HHHHHHHHHHHHHHHCCCCceehhhceeeccc
Confidence            34579999999999999999997653 2   279999997532222  24578999999999999999999999998776


Q ss_pred             ee------eEEEcccCCCCHHhHh
Q 041300          698 HS------FLVYEFLERGSLAAIL  715 (716)
Q Consensus       698 ~~------~lv~Ey~~~GsL~~~l  715 (716)
                      ..      ++||||+++|+|.+++
T Consensus        99 ~~~~~~~~~~v~e~~~~~~L~~~l  122 (323)
T 3qup_A           99 AKGRLPIPMVILPFMKHGDLHAFL  122 (323)
T ss_dssp             ------CEEEEEECCTTCBHHHHH
T ss_pred             cccCCCccEEEEEeccCCcHHHHH
Confidence            55      9999999999999876

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=99.08  E-value=1.7e-10  Score=118.29  Aligned_cols=90  Identities=27%  Similarity=0.457  Sum_probs=76.7

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ++|...+.||+|+||.||+|... +++.||||++....  ......+.+.+|++++++++|||||++++++...+..++|
T Consensus         3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv   80 (311)
T 4agu_A            3 EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESE--DDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLV   80 (311)
T ss_dssp             CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCC--C-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred             ccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccc--cchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEE
Confidence            46888899999999999999754 58999999986532  2222356788999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      ||||++|+|.+++
T Consensus        81 ~e~~~~~~l~~~~   93 (311)
T 4agu_A           81 FEYCDHTVLHELD   93 (311)
T ss_dssp             EECCSEEHHHHHH
T ss_pred             EEeCCCchHHHHH
Confidence            9999999988764

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=99.08  E-value=1.2e-10  Score=124.60  Aligned_cols=92  Identities=22%  Similarity=0.306  Sum_probs=73.7

Q ss_pred             hcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccc----hhhHHHHHHHHHHHhcCCCCCccccceEEEeCC
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQ----IADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ  697 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~----~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~  697 (716)
                      .+.|...+.||+|+||.||+|.. .+++.||||++........    ......+.+|++++++++|||||++++++. .+
T Consensus       134 ~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~-~~  212 (419)
T 3i6u_A          134 RDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFD-AE  212 (419)
T ss_dssp             HTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEE-SS
T ss_pred             hccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEe-cC
Confidence            46799999999999999999964 4688999999875321111    111235889999999999999999999985 55


Q ss_pred             eeeEEEcccCCCCHHhHh
Q 041300          698 HSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       698 ~~~lv~Ey~~~GsL~~~l  715 (716)
                      ..|+|||||++|+|.+++
T Consensus       213 ~~~lv~e~~~~g~L~~~l  230 (419)
T 3i6u_A          213 DYYIVLELMEGGELFDKV  230 (419)
T ss_dssp             EEEEEEECCTTCBGGGGT
T ss_pred             ceEEEEEcCCCCcHHHHH
Confidence            689999999999998876

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=99.08  E-value=1.4e-10  Score=116.72  Aligned_cols=89  Identities=27%  Similarity=0.377  Sum_probs=77.2

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ++|...+.||+|+||.||+|... +++.||||++......   ...+.+.+|+++++.++||||+++++++.+++..++|
T Consensus         7 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~---~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   83 (276)
T 2yex_A            7 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAV---DCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLF   83 (276)
T ss_dssp             HHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCT---THHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             cceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccch---hhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEE
Confidence            46888899999999999999754 6899999998753221   1346799999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      |||+++|+|.+++
T Consensus        84 ~e~~~~~~L~~~l   96 (276)
T 2yex_A           84 LEYCSGGELFDRI   96 (276)
T ss_dssp             EECCTTEEGGGGS
T ss_pred             EEecCCCcHHHHH
Confidence            9999999999876

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=99.07  E-value=8.1e-11  Score=122.69  Aligned_cols=92  Identities=20%  Similarity=0.311  Sum_probs=77.2

Q ss_pred             hcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeCCeee
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHSF  700 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~~~~~  700 (716)
                      ..+|...++||+|+||+||+|+.. +++.||||++.+...... ...+.+.+|+.++..+ +||+|+++++++.+.+..|
T Consensus        19 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~-~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~   97 (353)
T 2i0e_A           19 LTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQD-DDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY   97 (353)
T ss_dssp             CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHT-TCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEE
T ss_pred             hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcc-hHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEE
Confidence            467999999999999999999765 478999999975321111 1345688999999988 8999999999999999999


Q ss_pred             EEEcccCCCCHHhHh
Q 041300          701 LVYEFLERGSLAAIL  715 (716)
Q Consensus       701 lv~Ey~~~GsL~~~l  715 (716)
                      +|||||++|+|.+++
T Consensus        98 lv~E~~~gg~L~~~l  112 (353)
T 2i0e_A           98 FVMEYVNGGDLMYHI  112 (353)
T ss_dssp             EEEECCCSCBHHHHH
T ss_pred             EEEeCCCCCcHHHHH
Confidence            999999999999876

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=99.07  E-value=1.3e-10  Score=122.31  Aligned_cols=87  Identities=21%  Similarity=0.302  Sum_probs=74.7

Q ss_pred             hhcCCcccccccCCCceEEEEEE------cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCC---CCCccccceE
Q 041300          622 ETNDFDAEYCIGNGGHGSVYRAE------LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR---HRNIVKFYGF  692 (716)
Q Consensus       622 ~~~~~~~~~~ig~g~~g~v~~~~------~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~---H~niv~l~g~  692 (716)
                      ....|...++||+|+||.||+|.      ..+++.||||++...       ...++.+|++++.+++   |+|+++++++
T Consensus        63 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~-------~~~~~~~e~~~~~~l~~~~~~~iv~~~~~  135 (365)
T 3e7e_A           63 GSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPA-------NPWEFYIGTQLMERLKPSMQHMFMKFYSA  135 (365)
T ss_dssp             SSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSC-------CHHHHHHHHHHHHHSCGGGGGGBCCEEEE
T ss_pred             CCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCC-------ChhHHHHHHHHHHHhhhhhhhhhhhhhee
Confidence            34678889999999999999993      446889999998752       3456888888888887   9999999999


Q ss_pred             EEeCCeeeEEEcccCCCCHHhHh
Q 041300          693 CSHAQHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       693 ~~~~~~~~lv~Ey~~~GsL~~~l  715 (716)
                      +..++..++|||||++|+|.+++
T Consensus       136 ~~~~~~~~lv~e~~~~g~L~~~l  158 (365)
T 3e7e_A          136 HLFQNGSVLVGELYSYGTLLNAI  158 (365)
T ss_dssp             EECSSCEEEEECCCCSCBHHHHH
T ss_pred             eecCCCcEEEEeccCCCcHHHHH
Confidence            99999999999999999999987

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=99.07  E-value=5.9e-11  Score=123.34  Aligned_cols=85  Identities=21%  Similarity=0.312  Sum_probs=72.7

Q ss_pred             hcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeCCeee
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHSF  700 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~~~~~  700 (716)
                      .++|...+.||+|+||+||++... +++.||||++.+..        ..+.+|++++.++ +|||||++++++.+++..|
T Consensus        21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~--------~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~   92 (342)
T 2qr7_A           21 TDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSK--------RDPTEEIEILLRYGQHPNIITLKDVYDDGKYVY   92 (342)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTT--------CCCHHHHHHHHHHTTSTTBCCEEEEEECSSEEE
T ss_pred             cccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEccc--------CChHHHHHHHHHhcCCCCcCeEEEEEEcCCEEE
Confidence            356888999999999999999654 68899999997632        1245688888887 7999999999999999999


Q ss_pred             EEEcccCCCCHHhHh
Q 041300          701 LVYEFLERGSLAAIL  715 (716)
Q Consensus       701 lv~Ey~~~GsL~~~l  715 (716)
                      +|||||++|+|.+++
T Consensus        93 lv~E~~~gg~L~~~i  107 (342)
T 2qr7_A           93 VVTELMKGGELLDKI  107 (342)
T ss_dssp             EEECCCCSCBHHHHH
T ss_pred             EEEeCCCCCcHHHHH
Confidence            999999999999876

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=99.07  E-value=2.1e-10  Score=117.00  Aligned_cols=86  Identities=34%  Similarity=0.548  Sum_probs=71.1

Q ss_pred             hcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhc--CCCCCccccceEEEeC----
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTE--IRHRNIVKFYGFCSHA----  696 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~--l~H~niv~l~g~~~~~----  696 (716)
                      .++|...+.||+|+||+||+|+. +++.||||++...       ....+.+|.+++..  ++|||||++++++...    
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~-------~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~   78 (301)
T 3q4u_A            7 ARDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSSR-------DEKSWFRETELYNTVMLRHENILGFIASDMTSRHSS   78 (301)
T ss_dssp             GGGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECGG-------GHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTE
T ss_pred             cCcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEeccc-------cchhhHHHHHHHHHhhccCcCeeeEEEeeccccCCC
Confidence            35788999999999999999987 6889999998652       33556677777666  7999999999997653    


Q ss_pred             CeeeEEEcccCCCCHHhHhC
Q 041300          697 QHSFLVYEFLERGSLAAILS  716 (716)
Q Consensus       697 ~~~~lv~Ey~~~GsL~~~l~  716 (716)
                      ...++||||+++|+|.++++
T Consensus        79 ~~~~lv~e~~~~g~L~~~l~   98 (301)
T 3q4u_A           79 TQLWLITHYHEMGSLYDYLQ   98 (301)
T ss_dssp             EEEEEEECCCTTCBHHHHHT
T ss_pred             ceeEEehhhccCCCHHHHHh
Confidence            45799999999999999873

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=99.07  E-value=2.4e-10  Score=116.71  Aligned_cols=89  Identities=24%  Similarity=0.394  Sum_probs=77.4

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ..|...+.||+|+||.||+|.. .+++.||||++.......   ..+.+.+|+.++++++||||+++++++...+..++|
T Consensus        22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~---~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   98 (303)
T 3a7i_A           22 ELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAED---EIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWII   98 (303)
T ss_dssp             GTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCST---THHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred             HHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHH---HHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEE
Confidence            4588889999999999999964 468899999997543221   357799999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      |||+++|+|.+++
T Consensus        99 ~e~~~~~~L~~~~  111 (303)
T 3a7i_A           99 MEYLGGGSALDLL  111 (303)
T ss_dssp             EECCTTEEHHHHH
T ss_pred             EEeCCCCcHHHHH
Confidence            9999999999876

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=99.07  E-value=9.3e-11  Score=118.62  Aligned_cols=91  Identities=27%  Similarity=0.480  Sum_probs=76.5

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ++|...+.||+|+||.||+|... ++..||||++........ ...+.+.+|++++++++||||+++++++.+.+..++|
T Consensus        14 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   92 (284)
T 2vgo_A           14 DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKE-GVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLM   92 (284)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHT-TCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchH-HHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEE
Confidence            56888999999999999999754 578899999864211111 1246789999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      |||+++|+|.+++
T Consensus        93 ~e~~~~~~L~~~l  105 (284)
T 2vgo_A           93 LEFAPRGELYKEL  105 (284)
T ss_dssp             ECCCTTEEHHHHH
T ss_pred             EEeCCCCcHHHHH
Confidence            9999999998876

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=99.07  E-value=4.9e-11  Score=129.07  Aligned_cols=92  Identities=22%  Similarity=0.275  Sum_probs=69.5

Q ss_pred             hcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL  701 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l  701 (716)
                      .++|...++||+|+||.||+|.. .+++.||||++........ .....+.+|+.++++++|||||++++++...+..++
T Consensus       147 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~-~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~l  225 (446)
T 4ejn_A          147 MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAK-DEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCF  225 (446)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC--------------CCCCCSCTTSCCEEEEEEETTEEEE
T ss_pred             hHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhh-HHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEE
Confidence            45788999999999999999964 4689999999975321111 133568899999999999999999999999999999


Q ss_pred             EEcccCCCCHHhHh
Q 041300          702 VYEFLERGSLAAIL  715 (716)
Q Consensus       702 v~Ey~~~GsL~~~l  715 (716)
                      |||||++|+|.+++
T Consensus       226 v~e~~~~~~L~~~l  239 (446)
T 4ejn_A          226 VMEYANGGELFFHL  239 (446)
T ss_dssp             EECCCSSCBHHHHH
T ss_pred             EEeeCCCCcHHHHH
Confidence            99999999998876

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=99.07  E-value=1.1e-10  Score=127.69  Aligned_cols=90  Identities=22%  Similarity=0.391  Sum_probs=77.0

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ..|...++||+|+||+||+|... +++.||||++.......  .....+.+|++++++++|||||++++++.+.+..|+|
T Consensus        22 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~--~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv   99 (486)
T 3mwu_A           22 ERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKN--KDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIV   99 (486)
T ss_dssp             HHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBC--SCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             cceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccc--hHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEE
Confidence            45888999999999999999754 68999999986432111  1346799999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      ||||++|+|.+++
T Consensus       100 ~e~~~~~~L~~~~  112 (486)
T 3mwu_A          100 GELYTGGELFDEI  112 (486)
T ss_dssp             ECCCCSCBHHHHH
T ss_pred             EEcCCCCcHHHHH
Confidence            9999999998765

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=99.07  E-value=1.9e-10  Score=117.55  Aligned_cols=88  Identities=23%  Similarity=0.388  Sum_probs=74.8

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ..|...+.||+|+||.||+++.. +++.||||++.....    ...+.+.+|++++.+++||||+++++++.+.+..++|
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~----~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   84 (304)
T 2jam_A            9 KTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPA----FRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLV   84 (304)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC----------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             ccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccc----cchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEE
Confidence            46888999999999999999754 689999999975321    1335689999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      |||+++|+|.+++
T Consensus        85 ~e~~~~~~L~~~l   97 (304)
T 2jam_A           85 MQLVSGGELFDRI   97 (304)
T ss_dssp             ECCCCSCBHHHHH
T ss_pred             EEcCCCccHHHHH
Confidence            9999999998875

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=99.07  E-value=3.4e-10  Score=118.90  Aligned_cols=98  Identities=20%  Similarity=0.285  Sum_probs=80.0

Q ss_pred             HHHHhhcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccch----hhHHHHHHHHHHHhcC-CCCCccccce
Q 041300          618 EIVRETNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQI----ADQKEFLTEVQALTEI-RHRNIVKFYG  691 (716)
Q Consensus       618 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~----~~~~~~~~ei~~l~~l-~H~niv~l~g  691 (716)
                      .......+|...++||+|+||.||+|... +|+.||||++.........    ...+.+.+|+.++.++ +||||+++++
T Consensus        88 ~~~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~  167 (365)
T 2y7j_A           88 AAKEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLID  167 (365)
T ss_dssp             HHHHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEE
T ss_pred             hhhhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEE
Confidence            33344567899999999999999999764 6899999998754321111    1235688999999999 7999999999


Q ss_pred             EEEeCCeeeEEEcccCCCCHHhHh
Q 041300          692 FCSHAQHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       692 ~~~~~~~~~lv~Ey~~~GsL~~~l  715 (716)
                      ++...+..++|||||++|+|.+++
T Consensus       168 ~~~~~~~~~lv~e~~~g~~L~~~l  191 (365)
T 2y7j_A          168 SYESSSFMFLVFDLMRKGELFDYL  191 (365)
T ss_dssp             EEEBSSEEEEEECCCTTCBHHHHH
T ss_pred             EEeeCCEEEEEEEeCCCCcHHHHH
Confidence            999999999999999999999876

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=99.07  E-value=2.4e-10  Score=116.22  Aligned_cols=87  Identities=23%  Similarity=0.347  Sum_probs=73.6

Q ss_pred             CCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          625 DFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      .|....+||+|+||.||+|.. .+++.||||++....   . ...+.+.+|+.+++.++|||||++++++...+..++||
T Consensus        23 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~---~-~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~   98 (295)
T 2clq_A           23 ENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERD---S-RYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFM   98 (295)
T ss_dssp             TTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCC---C----HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             CCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCc---h-HHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEE
Confidence            355556899999999999974 568899999987532   1 13467999999999999999999999999999999999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      ||+++|+|.+++
T Consensus        99 e~~~~~~L~~~l  110 (295)
T 2clq_A           99 EQVPGGSLSALL  110 (295)
T ss_dssp             ECCSEEEHHHHH
T ss_pred             EeCCCCCHHHHH
Confidence            999999999876

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=99.07  E-value=5e-11  Score=124.77  Aligned_cols=92  Identities=20%  Similarity=0.309  Sum_probs=76.5

Q ss_pred             cCCcccccccCCCceEEEEEEc----CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeCCe
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL----PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQH  698 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~----~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~~~  698 (716)
                      .+|...++||+|+||.||+++.    .+++.||||+++...........+.+.+|++++.++ +||||+++++++...+.
T Consensus        54 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~  133 (355)
T 1vzo_A           54 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETK  133 (355)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTE
T ss_pred             cceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCce
Confidence            5788999999999999999975    368899999987532111111234578899999999 69999999999999999


Q ss_pred             eeEEEcccCCCCHHhHh
Q 041300          699 SFLVYEFLERGSLAAIL  715 (716)
Q Consensus       699 ~~lv~Ey~~~GsL~~~l  715 (716)
                      .++|||||++|+|.+++
T Consensus       134 ~~lv~e~~~~~~L~~~l  150 (355)
T 1vzo_A          134 LHLILDYINGGELFTHL  150 (355)
T ss_dssp             EEEEECCCCSCBHHHHH
T ss_pred             EEEEeecCCCCCHHHHH
Confidence            99999999999999886

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.07  E-value=3e-08  Score=104.60  Aligned_cols=310  Identities=9%  Similarity=0.016  Sum_probs=182.3

Q ss_pred             CEEEEEcCCCCCccccCCCCCCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEc
Q 041300           52 RVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSF  131 (716)
Q Consensus        52 ~v~~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  131 (716)
                      .++.+.+.. ++. .|.+.+|.++.+|+.++|..+ +..+...+|.++ +|+.+.+..+ +..+...+|... +|+.+.+
T Consensus        47 ~i~~v~ip~-~vt-~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i~l  120 (379)
T 4h09_A           47 RISEVRVNS-GIT-SIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDFEF  120 (379)
T ss_dssp             GCSEEEECT-TEE-EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEEEC
T ss_pred             CCEEEEeCC-Ccc-ChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-CcccccC
Confidence            466666653 343 677899999999999999754 776777889887 6888888754 554555677664 8999999


Q ss_pred             ccccCccCCCccccCCCCCceeecccccccCCCCccccCCcCCcEEEeecccccccccccccCCCCCceeeCCCCCcccC
Q 041300          132 QFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVG  211 (716)
Q Consensus       132 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~  211 (716)
                      ..+- ..+....|... +|+.+.+..+ ++.+....|....+++...+..+............ ..     .......+.
T Consensus       121 p~~~-~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~  191 (379)
T 4h09_A          121 PGAT-TEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLY-NK-----NKTILESYP  191 (379)
T ss_dssp             CTTC-CEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEE-ET-----TSSEEEECC
T ss_pred             CCcc-ccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceec-cc-----ccceecccc
Confidence            8653 33444455554 5666666543 45566777888888888877665432111000000 00     000011122


Q ss_pred             CCCccCEEEeeCCcCcccCCCccccccccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEE
Q 041300          212 NLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVR  291 (716)
Q Consensus       212 ~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~  291 (716)
                      ....+..+.+....                        .......+.....++.+.+..+ +.......|.++..|+.+.
T Consensus       192 ~~~~~~~~~~~~~~------------------------~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~  246 (379)
T 4h09_A          192 AAKTGTEFTIPSTV------------------------KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIA  246 (379)
T ss_dssp             TTCCCSEEECCTTC------------------------CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEE
T ss_pred             ccccccccccccce------------------------eEEeecccccccccceeeeccc-eeEEccccccCCccceEEE
Confidence            22233333322211                        1112223333344444444332 2223444556666677766


Q ss_pred             ccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCcccc
Q 041300          292 LNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVG  371 (716)
Q Consensus       292 l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  371 (716)
                      +..+ ++.....+|....+|+.+.+..+ +.......|..|.+|+.+.+.++.++.....+|.++.+|+.++|..+ ++.
T Consensus       247 lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~  323 (379)
T 4h09_A          247 IPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKT  323 (379)
T ss_dssp             ECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCE
T ss_pred             cCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccE
Confidence            6544 55555566666777777777543 55455566777777777777777676666667777777777777644 554


Q ss_pred             ccCcccCCCCCCcEEEccCCcccccCCcccCCCC
Q 041300          372 EIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLI  405 (716)
Q Consensus       372 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  405 (716)
                      +...+|.++.+|+.+.+..+ ++.+-..+|.++.
T Consensus       324 I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          324 IQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS  356 (379)
T ss_dssp             ECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred             EHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence            55567777777777777654 4444445565543

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.06  E-value=1.8e-10  Score=129.23  Aligned_cols=82  Identities=28%  Similarity=0.425  Sum_probs=69.4

Q ss_pred             cccCCCceEEEEEEcC---CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEcccC
Q 041300          631 CIGNGGHGSVYRAELP---SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLE  707 (716)
Q Consensus       631 ~ig~g~~g~v~~~~~~---~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~  707 (716)
                      .||+|+||.||+|.+.   ++..||||+++.....   ...++|.+|+++|++++|||||+++|+|.. +..++|||||+
T Consensus       343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~---~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~~~~lv~E~~~  418 (613)
T 2ozo_A          343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEK---ADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLVMEMAG  418 (613)
T ss_dssp             EEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSS---TTHHHHHHHHHHHTTCCCTTBCCEEEEEES-SSEEEEEECCT
T ss_pred             EEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCCh---HHHHHHHHHHHHHHhCCCCCEeeEEEEecc-CCeEEEEEeCC
Confidence            7999999999999653   4567999999764211   245789999999999999999999999976 56899999999


Q ss_pred             CCCHHhHhC
Q 041300          708 RGSLAAILS  716 (716)
Q Consensus       708 ~GsL~~~l~  716 (716)
                      +|+|.++++
T Consensus       419 ~g~L~~~l~  427 (613)
T 2ozo_A          419 GGPLHKFLV  427 (613)
T ss_dssp             TCBHHHHHT
T ss_pred             CCcHHHHHh
Confidence            999999873

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=99.06  E-value=2.7e-10  Score=115.42  Aligned_cols=90  Identities=33%  Similarity=0.480  Sum_probs=73.6

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhh---HHHHHHHHHHHhcCCCCCccccceEEEeCCee
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIAD---QKEFLTEVQALTEIRHRNIVKFYGFCSHAQHS  699 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~---~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~  699 (716)
                      .+|...+.||+|+||.||+|.. .+++.||||++...........   .+.|.+|++++++++||||+++++++.+..  
T Consensus        19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--   96 (287)
T 4f0f_A           19 NEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPP--   96 (287)
T ss_dssp             TTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTT--
T ss_pred             ccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCC--
Confidence            5688899999999999999975 4689999999975433222211   167999999999999999999999985544  


Q ss_pred             eEEEcccCCCCHHhHh
Q 041300          700 FLVYEFLERGSLAAIL  715 (716)
Q Consensus       700 ~lv~Ey~~~GsL~~~l  715 (716)
                      ++||||+++|+|.+++
T Consensus        97 ~lv~e~~~~~~L~~~l  112 (287)
T 4f0f_A           97 RMVMEFVPCGDLYHRL  112 (287)
T ss_dssp             EEEEECCTTCBHHHHH
T ss_pred             eEEEEecCCCCHHHHH
Confidence            7999999999998765

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=99.06  E-value=2.9e-10  Score=115.38  Aligned_cols=89  Identities=25%  Similarity=0.362  Sum_probs=73.9

Q ss_pred             CCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEe----CCee
Q 041300          625 DFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSH----AQHS  699 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~----~~~~  699 (716)
                      .|...+.||+|+||.||+|.. .++..||+|++......  ....+.+.+|++++++++|||||++++++..    ....
T Consensus        27 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~--~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~  104 (290)
T 1t4h_A           27 FLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLT--KSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCI  104 (290)
T ss_dssp             EEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSC--HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEE
T ss_pred             eEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhC--HHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceE
Confidence            467778899999999999965 46789999998754322  2245679999999999999999999999875    3457


Q ss_pred             eEEEcccCCCCHHhHh
Q 041300          700 FLVYEFLERGSLAAIL  715 (716)
Q Consensus       700 ~lv~Ey~~~GsL~~~l  715 (716)
                      ++||||+++|+|.+++
T Consensus       105 ~lv~e~~~~~~L~~~l  120 (290)
T 1t4h_A          105 VLVTELMTSGTLKTYL  120 (290)
T ss_dssp             EEEEECCCSCBHHHHH
T ss_pred             EEEEEecCCCCHHHHH
Confidence            9999999999999886

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=99.06  E-value=2.8e-10  Score=117.67  Aligned_cols=88  Identities=32%  Similarity=0.435  Sum_probs=74.7

Q ss_pred             cCCcccccccCCCceEEEEEEc-----CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEe--C
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-----PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSH--A  696 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-----~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~--~  696 (716)
                      ..|...+.||+|+||.||++++     .++..||||++....    ....+.+.+|++++++++||||+++++++..  .
T Consensus        23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~   98 (327)
T 3lxl_A           23 RHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSG----PDQQRDFQREIQILKALHSDFIVKYRGVSYGPGR   98 (327)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCC----HHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSS
T ss_pred             hhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCC----HHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCC
Confidence            4688899999999999999984     357899999997531    1245679999999999999999999999874  4


Q ss_pred             CeeeEEEcccCCCCHHhHh
Q 041300          697 QHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       697 ~~~~lv~Ey~~~GsL~~~l  715 (716)
                      ...++||||+++|+|.+++
T Consensus        99 ~~~~lv~e~~~~~~L~~~l  117 (327)
T 3lxl_A           99 QSLRLVMEYLPSGCLRDFL  117 (327)
T ss_dssp             CEEEEEEECCTTCBHHHHH
T ss_pred             ceEEEEEeecCCCCHHHHH
Confidence            5689999999999999876

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.05  E-value=1.8e-10  Score=119.48  Aligned_cols=89  Identities=26%  Similarity=0.473  Sum_probs=74.5

Q ss_pred             cCCcccccccCCCceEEEEEEcCC-----CCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCe
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELPS-----GEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQH  698 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~~-----~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~  698 (716)
                      ..|...+.||+|+||.||+|....     +..||||++....   .......|.+|++++.+++|||||++++++...+.
T Consensus        44 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~  120 (333)
T 1mqb_A           44 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGY---TEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKP  120 (333)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTC---CHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSS
T ss_pred             HHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCC---CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCC
Confidence            456677899999999999996532     2369999997532   11244679999999999999999999999998899


Q ss_pred             eeEEEcccCCCCHHhHh
Q 041300          699 SFLVYEFLERGSLAAIL  715 (716)
Q Consensus       699 ~~lv~Ey~~~GsL~~~l  715 (716)
                      .++||||+++|+|.+++
T Consensus       121 ~~lv~e~~~~~~L~~~l  137 (333)
T 1mqb_A          121 MMIITEYMENGALDKFL  137 (333)
T ss_dssp             EEEEEECCTTEEHHHHH
T ss_pred             cEEEEeCCCCCcHHHHH
Confidence            99999999999999886

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=99.05  E-value=2.5e-10  Score=117.46  Aligned_cols=89  Identities=22%  Similarity=0.389  Sum_probs=73.4

Q ss_pred             hcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEe----CC
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSH----AQ  697 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~----~~  697 (716)
                      ..+|...+.||+|+||.||++.. .+++.||||++...   . ....+.+.+|++++++++|||||++++++..    ..
T Consensus        28 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~  103 (317)
T 2buj_A           28 NKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCH---E-QQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKH  103 (317)
T ss_dssp             TEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEES---S-HHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEE
T ss_pred             CeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecC---C-HHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCc
Confidence            35788999999999999999975 57899999998652   1 1245679999999999999999999999973    34


Q ss_pred             eeeEEEcccCCCCHHhHh
Q 041300          698 HSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       698 ~~~lv~Ey~~~GsL~~~l  715 (716)
                      ..++||||+++|+|.+++
T Consensus       104 ~~~lv~e~~~~~~L~~~l  121 (317)
T 2buj_A          104 EAWLLLPFFKRGTLWNEI  121 (317)
T ss_dssp             EEEEEEECCTTCBHHHHH
T ss_pred             eeEEEEEeCCCCcHHHHH
Confidence            679999999999999876

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=99.05  E-value=2.7e-10  Score=115.41  Aligned_cols=91  Identities=22%  Similarity=0.389  Sum_probs=78.2

Q ss_pred             hcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL  701 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l  701 (716)
                      .+.|...+.||+|+||.||+|... +++.||||++.......  ...+.+.+|++++++++||||+++++++...+..++
T Consensus        21 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   98 (287)
T 2wei_A           21 AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKN--KDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYI   98 (287)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSS--SCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE
T ss_pred             hhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccch--HHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEEE
Confidence            357899999999999999999754 68899999986532221  135679999999999999999999999999999999


Q ss_pred             EEcccCCCCHHhHh
Q 041300          702 VYEFLERGSLAAIL  715 (716)
Q Consensus       702 v~Ey~~~GsL~~~l  715 (716)
                      ||||+++|+|.+++
T Consensus        99 v~e~~~~~~L~~~l  112 (287)
T 2wei_A           99 VGELYTGGELFDEI  112 (287)
T ss_dssp             EECCCCSCBHHHHH
T ss_pred             EEEccCCCCHHHHH
Confidence            99999999998765

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.05  E-value=3.1e-10  Score=114.98  Aligned_cols=87  Identities=28%  Similarity=0.418  Sum_probs=72.1

Q ss_pred             CCcccc-cccCCCceEEEEEEcC---CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeee
Q 041300          625 DFDAEY-CIGNGGHGSVYRAELP---SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSF  700 (716)
Q Consensus       625 ~~~~~~-~ig~g~~g~v~~~~~~---~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~  700 (716)
                      +|.... .||+|+||.||+|...   ++..||||++....   .....+++.+|++++++++||||+++++++ ..+..+
T Consensus        10 ~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-~~~~~~   85 (287)
T 1u59_A           10 NLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGT---EKADTEEMMREAQIMHQLDNPYIVRLIGVC-QAEALM   85 (287)
T ss_dssp             GEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSC---CHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-ESSSEE
T ss_pred             HhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCcc---chhHHHHHHHHHHHHHhCCCCCEeEEEEEe-cCCCcE
Confidence            344444 8999999999999753   57789999997632   222457799999999999999999999999 556789


Q ss_pred             EEEcccCCCCHHhHh
Q 041300          701 LVYEFLERGSLAAIL  715 (716)
Q Consensus       701 lv~Ey~~~GsL~~~l  715 (716)
                      +||||+++|+|.+++
T Consensus        86 lv~e~~~~~~L~~~l  100 (287)
T 1u59_A           86 LVMEMAGGGPLHKFL  100 (287)
T ss_dssp             EEEECCTTEEHHHHH
T ss_pred             EEEEeCCCCCHHHHH
Confidence            999999999999886

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=99.05  E-value=3e-10  Score=115.37  Aligned_cols=87  Identities=26%  Similarity=0.429  Sum_probs=73.0

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ++|...+.||+|+||+||+|... +++.||||++.......  .....+.+|++++++++|||||++++++.+++..++|
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~--~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv   79 (292)
T 3o0g_A            2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDE--GVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLV   79 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSST--THHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcC--CcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEE
Confidence            46888899999999999999754 68999999997643222  2346789999999999999999999999999999999


Q ss_pred             EcccCCCCHHh
Q 041300          703 YEFLERGSLAA  713 (716)
Q Consensus       703 ~Ey~~~GsL~~  713 (716)
                      ||||++ ++.+
T Consensus        80 ~e~~~~-~l~~   89 (292)
T 3o0g_A           80 FEFCDQ-DLKK   89 (292)
T ss_dssp             EECCSE-EHHH
T ss_pred             EecCCC-CHHH
Confidence            999986 4444

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=99.05  E-value=7.4e-11  Score=123.21  Aligned_cols=91  Identities=20%  Similarity=0.402  Sum_probs=77.1

Q ss_pred             hcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccch-------------hhHHHHHHHHHHHhcCCCCCcccc
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQI-------------ADQKEFLTEVQALTEIRHRNIVKF  689 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~-------------~~~~~~~~ei~~l~~l~H~niv~l  689 (716)
                      .++|...+.||+|+||.||+|.. +++.||||++.........             ...+.|.+|++++.+++||||+++
T Consensus        30 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~  108 (348)
T 2pml_X           30 INDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTC  108 (348)
T ss_dssp             ETTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCC
T ss_pred             cCceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceE
Confidence            35788999999999999999987 8999999998653211100             011679999999999999999999


Q ss_pred             ceEEEeCCeeeEEEcccCCCCHHhH
Q 041300          690 YGFCSHAQHSFLVYEFLERGSLAAI  714 (716)
Q Consensus       690 ~g~~~~~~~~~lv~Ey~~~GsL~~~  714 (716)
                      ++++.+.+..++||||+++|+|.++
T Consensus       109 ~~~~~~~~~~~lv~e~~~~~~L~~~  133 (348)
T 2pml_X          109 EGIITNYDEVYIIYEYMENDSILKF  133 (348)
T ss_dssp             SEEEESSSEEEEEEECCTTCBSSEE
T ss_pred             EEEEeeCCeEEEEEeccCCCcHHHH
Confidence            9999999999999999999999887

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=99.04  E-value=2.7e-10  Score=115.02  Aligned_cols=89  Identities=25%  Similarity=0.425  Sum_probs=73.7

Q ss_pred             hcCCcccccccCCCceEEEEEEcCC----CCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCe
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELPS----GEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQH  698 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~~----~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~  698 (716)
                      ...|...+.||+|+||.||+|....    +..||||++....   .....+.|.+|+.++++++|||||++++++ ..+.
T Consensus        14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~-~~~~   89 (281)
T 1mp8_A           14 RERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCT---SDSVREKFLQEALTMRQFDHPHIVKLIGVI-TENP   89 (281)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTT---SHHHHHHHHHHHHHHHTCCCTTBCCEEEEE-CSSS
T ss_pred             hHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccC---CHHHHHHHHHHHHHHHhCCCCccceEEEEE-ccCc
Confidence            3568889999999999999997532    4579999987532   122456799999999999999999999998 4567


Q ss_pred             eeEEEcccCCCCHHhHh
Q 041300          699 SFLVYEFLERGSLAAIL  715 (716)
Q Consensus       699 ~~lv~Ey~~~GsL~~~l  715 (716)
                      .++||||+++|+|.+++
T Consensus        90 ~~lv~e~~~~~~L~~~l  106 (281)
T 1mp8_A           90 VWIIMELCTLGELRSFL  106 (281)
T ss_dssp             CEEEEECCTTEEHHHHH
T ss_pred             cEEEEecCCCCCHHHHH
Confidence            89999999999999876

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=99.04  E-value=1.6e-10  Score=118.75  Aligned_cols=96  Identities=23%  Similarity=0.423  Sum_probs=78.4

Q ss_pred             HHHHHhhcCCcccccccCCCceEEEEEEc------CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCcccc
Q 041300          617 DEIVRETNDFDAEYCIGNGGHGSVYRAEL------PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKF  689 (716)
Q Consensus       617 ~~~~~~~~~~~~~~~ig~g~~g~v~~~~~------~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l  689 (716)
                      ..+....++|...+.||+|+||.||+|..      .+++.||||++....   .....+.+.+|++++.++ +|||||++
T Consensus        20 ~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~~hp~iv~~   96 (316)
T 2xir_A           20 SKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGA---THSEHRALMSELKILIHIGHHLNVVNL   96 (316)
T ss_dssp             HHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTC---CHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred             cceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCC---CcHHHHHHHHHHHHHHhcccCCCeeeE
Confidence            34444567899999999999999999963      346789999997532   122446799999999999 79999999


Q ss_pred             ceEEEeCC-eeeEEEcccCCCCHHhHh
Q 041300          690 YGFCSHAQ-HSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       690 ~g~~~~~~-~~~lv~Ey~~~GsL~~~l  715 (716)
                      ++++...+ ..++||||+++|+|.+++
T Consensus        97 ~~~~~~~~~~~~lv~e~~~~~~L~~~l  123 (316)
T 2xir_A           97 LGACTKPGGPLMVIVEFCKFGNLSTYL  123 (316)
T ss_dssp             EEEECCTTSCCEEEEECCTTEEHHHHH
T ss_pred             EEEEecCCCceEEEEEcCCCCcHHHHH
Confidence            99997755 489999999999999886

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=99.03  E-value=2.2e-10  Score=118.58  Aligned_cols=91  Identities=25%  Similarity=0.431  Sum_probs=73.9

Q ss_pred             hhcCCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeee
Q 041300          622 ETNDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSF  700 (716)
Q Consensus       622 ~~~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~  700 (716)
                      ..++|...+.||+|+||.||+|. ..+++.||||++.......  ...+.+.+|++++++++|||||++++++.+++..+
T Consensus        32 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~--~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~  109 (329)
T 3gbz_A           32 SIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEE--GVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLH  109 (329)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC----------CHHHHHHGGGCCCTTBCCEEEEEEETTEEE
T ss_pred             chhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEccccccc--ccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEE
Confidence            34679999999999999999996 4468899999997532211  13456889999999999999999999999999999


Q ss_pred             EEEcccCCCCHHhHh
Q 041300          701 LVYEFLERGSLAAIL  715 (716)
Q Consensus       701 lv~Ey~~~GsL~~~l  715 (716)
                      +|||||++ +|.+++
T Consensus       110 lv~e~~~~-~L~~~~  123 (329)
T 3gbz_A          110 LIFEYAEN-DLKKYM  123 (329)
T ss_dssp             EEEECCSE-EHHHHH
T ss_pred             EEEecCCC-CHHHHH
Confidence            99999984 898875

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=99.03  E-value=3e-10  Score=115.96  Aligned_cols=89  Identities=25%  Similarity=0.478  Sum_probs=75.0

Q ss_pred             hcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL  701 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l  701 (716)
                      .+.|...+.||+|+||.||+|... ++..||+|++.....    ...+.|.+|++++.+++||||+++++++..++..++
T Consensus        18 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~----~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   93 (302)
T 2j7t_A           18 NEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSE----EELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWI   93 (302)
T ss_dssp             GGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC--------CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEE
T ss_pred             ccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCH----HHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEE
Confidence            356888899999999999999765 588999999875321    134679999999999999999999999999999999


Q ss_pred             EEcccCCCCHHhHh
Q 041300          702 VYEFLERGSLAAIL  715 (716)
Q Consensus       702 v~Ey~~~GsL~~~l  715 (716)
                      ||||+++|+|.+++
T Consensus        94 v~e~~~~~~l~~~~  107 (302)
T 2j7t_A           94 MIEFCPGGAVDAIM  107 (302)
T ss_dssp             EEECCTTEEHHHHH
T ss_pred             EEEeCCCCcHHHHH
Confidence            99999999998875

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=99.03  E-value=3.5e-10  Score=115.39  Aligned_cols=87  Identities=25%  Similarity=0.467  Sum_probs=74.4

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEe-------
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSH-------  695 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~-------  695 (716)
                      ++|...+.||+|+||.||+|.. .+++.||||++...     ....+.+.+|++++++++||||+++++++.+       
T Consensus         6 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-----~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~   80 (303)
T 1zy4_A            6 SDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT-----EEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKP   80 (303)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEE-----HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC-
T ss_pred             ccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEecc-----HHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhh
Confidence            4688889999999999999975 47899999998642     1245679999999999999999999999865       


Q ss_pred             ------CCeeeEEEcccCCCCHHhHh
Q 041300          696 ------AQHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       696 ------~~~~~lv~Ey~~~GsL~~~l  715 (716)
                            .+..++||||+++|+|.+++
T Consensus        81 ~~~~~~~~~~~lv~e~~~~~~L~~~l  106 (303)
T 1zy4_A           81 MTAVKKKSTLFIQMEYCENGTLYDLI  106 (303)
T ss_dssp             -----CEEEEEEEEECCCSCBHHHHH
T ss_pred             hcccccCCceEEEEecCCCCCHHHhh
Confidence                  35679999999999999886

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=99.03  E-value=3.9e-10  Score=116.53  Aligned_cols=88  Identities=36%  Similarity=0.566  Sum_probs=73.7

Q ss_pred             cCCcccccccCCCceEEEEEEc-----CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC-
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-----PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ-  697 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-----~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~-  697 (716)
                      ..|...+.||+|+||.||++++     .+++.||||++....   . ...+.|.+|++++++++|||||++++++...+ 
T Consensus        41 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~---~-~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~  116 (326)
T 2w1i_A           41 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHST---E-EHLRDFEREIEILKSLQHDNIVKYKGVCYSAGR  116 (326)
T ss_dssp             GGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCC---S-HHHHHHHHHHHHHHTCCCTTBCCEEEEECC---
T ss_pred             HHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCC---H-HHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCC
Confidence            4688889999999999999974     357899999997531   1 24567999999999999999999999986644 


Q ss_pred             -eeeEEEcccCCCCHHhHh
Q 041300          698 -HSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       698 -~~~lv~Ey~~~GsL~~~l  715 (716)
                       ..++||||+++|+|.+++
T Consensus       117 ~~~~lv~e~~~~~~L~~~l  135 (326)
T 2w1i_A          117 RNLKLIMEYLPYGSLRDYL  135 (326)
T ss_dssp             -CCEEEECCCTTCBHHHHH
T ss_pred             CceEEEEECCCCCCHHHHH
Confidence             679999999999999886

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=99.02  E-value=1.1e-10  Score=119.33  Aligned_cols=91  Identities=30%  Similarity=0.468  Sum_probs=63.9

Q ss_pred             hhcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeee
Q 041300          622 ETNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSF  700 (716)
Q Consensus       622 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~  700 (716)
                      ...+|...+.||+|+||.||+|.. .+++.||||++......   ...+++.+|++++.+++||||+++++++...+..+
T Consensus        13 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   89 (303)
T 2vwi_A           13 NRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQ---TSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELW   89 (303)
T ss_dssp             CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC-------------------CCCCCCCTTBCCEEEEEESSSCEE
T ss_pred             chhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcc---hhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcE
Confidence            356799999999999999999975 36889999998653211   13467899999999999999999999999999999


Q ss_pred             EEEcccCCCCHHhHh
Q 041300          701 LVYEFLERGSLAAIL  715 (716)
Q Consensus       701 lv~Ey~~~GsL~~~l  715 (716)
                      +||||+++|+|.+++
T Consensus        90 lv~e~~~~~~L~~~l  104 (303)
T 2vwi_A           90 LVMKLLSGGSVLDII  104 (303)
T ss_dssp             EEEECCTTCBHHHHH
T ss_pred             EEehhccCCchHHHH
Confidence            999999999999876

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=99.02  E-value=1.9e-10  Score=120.98  Aligned_cols=88  Identities=27%  Similarity=0.509  Sum_probs=71.8

Q ss_pred             CCcccccccCCCceEEEEEEcC--CC--CEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEe-CCee
Q 041300          625 DFDAEYCIGNGGHGSVYRAELP--SG--EVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSH-AQHS  699 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~~--~~--~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~-~~~~  699 (716)
                      .|...++||+|+||+||+|...  ++  ..||||.+....  . ....++|.+|+.++++++|||||+++++|.. ++..
T Consensus        90 ~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~--~-~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~  166 (373)
T 3c1x_A           90 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRIT--D-IGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSP  166 (373)
T ss_dssp             EEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCS--C-SHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCC
T ss_pred             eeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCC--C-HHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCe
Confidence            4666789999999999999753  22  368999987532  1 1245789999999999999999999999865 4578


Q ss_pred             eEEEcccCCCCHHhHh
Q 041300          700 FLVYEFLERGSLAAIL  715 (716)
Q Consensus       700 ~lv~Ey~~~GsL~~~l  715 (716)
                      ++||||+++|+|.+++
T Consensus       167 ~lv~e~~~~g~L~~~l  182 (373)
T 3c1x_A          167 LVVLPYMKHGDLRNFI  182 (373)
T ss_dssp             EEEEECCTTCBHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            9999999999999986

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=99.02  E-value=1.9e-10  Score=116.27  Aligned_cols=84  Identities=30%  Similarity=0.531  Sum_probs=72.2

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEe-------
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSH-------  695 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~-------  695 (716)
                      .+|...+.||+|+||.||+|... +++.||||++....        ..+.+|++++++++||||+++++++..       
T Consensus        11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--------~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   82 (284)
T 2a19_B           11 MDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN--------EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPET   82 (284)
T ss_dssp             HHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS--------GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC---
T ss_pred             cccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc--------HHHHHHHHHHHhCCCCCEEEEeeeEeccccCccc
Confidence            46888999999999999999765 68999999987521        347789999999999999999999864       


Q ss_pred             ---------CCeeeEEEcccCCCCHHhHh
Q 041300          696 ---------AQHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       696 ---------~~~~~lv~Ey~~~GsL~~~l  715 (716)
                               ....++||||+++|+|.+++
T Consensus        83 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~l  111 (284)
T 2a19_B           83 SSKNSSRSKTKCLFIQMEFCDKGTLEQWI  111 (284)
T ss_dssp             ------CCEEEEEEEEECCCCSCBHHHHH
T ss_pred             ccccccccCcceEEEEEeccCCCCHHHHH
Confidence                     34579999999999999986

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=99.02  E-value=3.7e-10  Score=115.99  Aligned_cols=87  Identities=29%  Similarity=0.522  Sum_probs=71.8

Q ss_pred             hcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL  701 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l  701 (716)
                      ...|...+.||+|+||.||+|... +|+.||||++....      ..+++.+|++++.+++||||+++++++...+..++
T Consensus        28 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~------~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l  101 (314)
T 3com_A           28 EEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES------DLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWI  101 (314)
T ss_dssp             --CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTS------CCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEE
T ss_pred             hhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchH------HHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEE
Confidence            456888999999999999999754 58999999987531      23568999999999999999999999999999999


Q ss_pred             EEcccCCCCHHhHh
Q 041300          702 VYEFLERGSLAAIL  715 (716)
Q Consensus       702 v~Ey~~~GsL~~~l  715 (716)
                      ||||+++|+|.+++
T Consensus       102 v~e~~~~~~L~~~~  115 (314)
T 3com_A          102 VMEYCGAGSVSDII  115 (314)
T ss_dssp             EEECCTTEEHHHHH
T ss_pred             EeecCCCCCHHHHH
Confidence            99999999999876

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=99.02  E-value=3.4e-10  Score=117.00  Aligned_cols=89  Identities=29%  Similarity=0.569  Sum_probs=73.5

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCE--EEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeCCee
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEV--VAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHS  699 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~--vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~~~~  699 (716)
                      ++|...+.||+|+||.||+|... ++..  ||||++.....   ....+.+.+|++++.++ +||||+++++++.+.+..
T Consensus        25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~---~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~  101 (327)
T 1fvr_A           25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYAS---KDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYL  101 (327)
T ss_dssp             GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC---------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEE
T ss_pred             HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccc---hHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCce
Confidence            46888999999999999999653 4554  49999875321   11345799999999999 999999999999999999


Q ss_pred             eEEEcccCCCCHHhHh
Q 041300          700 FLVYEFLERGSLAAIL  715 (716)
Q Consensus       700 ~lv~Ey~~~GsL~~~l  715 (716)
                      ++||||+++|+|.+++
T Consensus       102 ~lv~e~~~~~~L~~~l  117 (327)
T 1fvr_A          102 YLAIEYAPHGNLLDFL  117 (327)
T ss_dssp             EEEECCCTTCBHHHHH
T ss_pred             EEEEecCCCCCHHHHH
Confidence            9999999999999986

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=99.02  E-value=3.3e-10  Score=117.33  Aligned_cols=90  Identities=27%  Similarity=0.501  Sum_probs=76.6

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ++|...++||+|+||.||+|... +++.||||++.....  .....+.+.+|++++.+++|||||++++++.+.+..++|
T Consensus        25 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv  102 (331)
T 4aaa_A           25 EKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDD--DKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLV  102 (331)
T ss_dssp             GGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSS--CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred             hhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCC--chHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEE
Confidence            46888899999999999999754 589999999865322  222346688999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      |||+++|+|.+++
T Consensus       103 ~e~~~~~~l~~~~  115 (331)
T 4aaa_A          103 FEFVDHTILDDLE  115 (331)
T ss_dssp             EECCSEEHHHHHH
T ss_pred             EecCCcchHHHHH
Confidence            9999999888763

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=99.02  E-value=5.4e-10  Score=113.77  Aligned_cols=93  Identities=22%  Similarity=0.308  Sum_probs=77.4

Q ss_pred             hcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCcc-----chhhHHHHHHHHHHHhcCC-CCCccccceEEEe
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCD-----QIADQKEFLTEVQALTEIR-HRNIVKFYGFCSH  695 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~-----~~~~~~~~~~ei~~l~~l~-H~niv~l~g~~~~  695 (716)
                      ..+|...+.||+|+||.||+|... +++.||||++.......     .....+.+.+|++++.+++ ||||+++++++..
T Consensus        16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~   95 (298)
T 1phk_A           16 YENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYET   95 (298)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEC
T ss_pred             hhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeecc
Confidence            357889999999999999999754 68899999997532111     0112456889999999996 9999999999999


Q ss_pred             CCeeeEEEcccCCCCHHhHh
Q 041300          696 AQHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       696 ~~~~~lv~Ey~~~GsL~~~l  715 (716)
                      .+..++||||+++|+|.+++
T Consensus        96 ~~~~~lv~e~~~~~~L~~~l  115 (298)
T 1phk_A           96 NTFFFLVFDLMKKGELFDYL  115 (298)
T ss_dssp             SSEEEEEEECCTTCBHHHHH
T ss_pred             CCeEEEEEeccCCCcHHHHH
Confidence            99999999999999999886

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=99.01  E-value=1.8e-10  Score=118.13  Aligned_cols=89  Identities=22%  Similarity=0.275  Sum_probs=71.7

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeCCeeeE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHSFL  701 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~~~~~l  701 (716)
                      ++|...++||+|+||+||+|... +++.||||++......  .....++.+|+..+.++ +|||||+++++|.+++..++
T Consensus        57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~--~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~l  134 (311)
T 3p1a_A           57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRG--PKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYL  134 (311)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCS--HHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred             hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccC--hHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEE
Confidence            46888999999999999999765 6899999998653221  12344566777666655 99999999999999999999


Q ss_pred             EEcccCCCCHHhHh
Q 041300          702 VYEFLERGSLAAIL  715 (716)
Q Consensus       702 v~Ey~~~GsL~~~l  715 (716)
                      ||||| +|+|.+++
T Consensus       135 v~e~~-~~~L~~~~  147 (311)
T 3p1a_A          135 QTELC-GPSLQQHC  147 (311)
T ss_dssp             EEECC-CCBHHHHH
T ss_pred             EEecc-CCCHHHHH
Confidence            99999 67888765

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=99.01  E-value=2.7e-10  Score=114.84  Aligned_cols=86  Identities=29%  Similarity=0.527  Sum_probs=73.0

Q ss_pred             hcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC-CeeeE
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA-QHSFL  701 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~-~~~~l  701 (716)
                      ..+|...+.||+|+||.||+|.. .++.||||++....      ..+.|.+|++++++++|||||++++++.+. +..++
T Consensus        20 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~------~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~l   92 (278)
T 1byg_A           20 MKELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDA------TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYI   92 (278)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEE-TTEEEEEEECCCCC--------HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEE
T ss_pred             hhhceEEeEEecCCCceEEEEEE-cCCEEEEEEecchh------HHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEE
Confidence            35688899999999999999987 47899999987521      346799999999999999999999997654 46899


Q ss_pred             EEcccCCCCHHhHh
Q 041300          702 VYEFLERGSLAAIL  715 (716)
Q Consensus       702 v~Ey~~~GsL~~~l  715 (716)
                      ||||+++|+|.+++
T Consensus        93 v~e~~~~~~L~~~l  106 (278)
T 1byg_A           93 VTEYMAKGSLVDYL  106 (278)
T ss_dssp             EECCCTTEEHHHHH
T ss_pred             EEecCCCCCHHHHH
Confidence            99999999999876

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=99.01  E-value=2.1e-10  Score=118.33  Aligned_cols=91  Identities=22%  Similarity=0.318  Sum_probs=71.3

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCc----cchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCe
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPC----DQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQH  698 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~----~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~  698 (716)
                      ++|...+.||+|+||.||+|.. .+++.||||++......    ........+.+|++++++++||||+++++++..++ 
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~-   88 (322)
T 2ycf_A           10 DEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAED-   88 (322)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESSS-
T ss_pred             hceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCCc-
Confidence            4688899999999999999965 45789999999753211    01112345889999999999999999999986654 


Q ss_pred             eeEEEcccCCCCHHhHh
Q 041300          699 SFLVYEFLERGSLAAIL  715 (716)
Q Consensus       699 ~~lv~Ey~~~GsL~~~l  715 (716)
                      .|+||||+++|+|.+++
T Consensus        89 ~~lv~e~~~~~~L~~~~  105 (322)
T 2ycf_A           89 YYIVLELMEGGELFDKV  105 (322)
T ss_dssp             EEEEEECCTTEETHHHH
T ss_pred             eEEEEecCCCCcHHHHH
Confidence            89999999999998876

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.01  E-value=3.5e-10  Score=127.25  Aligned_cols=83  Identities=30%  Similarity=0.454  Sum_probs=69.0

Q ss_pred             ccccCCCceEEEEEEcC---CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEccc
Q 041300          630 YCIGNGGHGSVYRAELP---SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFL  706 (716)
Q Consensus       630 ~~ig~g~~g~v~~~~~~---~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  706 (716)
                      +.||+|+||.||+|.+.   .++.||||+++.... . ....++|.+|++++.+++|||||+++++|. .+..++|||||
T Consensus       375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~-~-~~~~~~~~~E~~il~~l~hpnIv~l~~~~~-~~~~~lv~E~~  451 (635)
T 4fl3_A          375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEAN-D-PALKDELLAEANVMQQLDNPYIVRMIGICE-AESWMLVMEMA  451 (635)
T ss_dssp             EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGG-C-GGGHHHHHHHHHHHHHCCCTTBCCEEEEEE-SSSEEEEEECC
T ss_pred             CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccC-C-HHHHHHHHHHHHHHHhCCCCCEeeEEEEEe-cCCEEEEEEcc
Confidence            47999999999999543   457899999975321 1 124578999999999999999999999996 45689999999


Q ss_pred             CCCCHHhHh
Q 041300          707 ERGSLAAIL  715 (716)
Q Consensus       707 ~~GsL~~~l  715 (716)
                      ++|+|.+++
T Consensus       452 ~~g~L~~~l  460 (635)
T 4fl3_A          452 ELGPLNKYL  460 (635)
T ss_dssp             TTEEHHHHH
T ss_pred             CCCCHHHHH
Confidence            999999886

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=99.01  E-value=2.5e-10  Score=115.92  Aligned_cols=89  Identities=28%  Similarity=0.410  Sum_probs=71.6

Q ss_pred             cCCcccc-cccCCCceEEEEEEc---CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCee
Q 041300          624 NDFDAEY-CIGNGGHGSVYRAEL---PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHS  699 (716)
Q Consensus       624 ~~~~~~~-~ig~g~~g~v~~~~~---~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~  699 (716)
                      ..|.... .||+|+||.||+|..   ..+..||||++.....  .....++|.+|++++++++||||+++++++ ..+..
T Consensus        16 ~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-~~~~~   92 (291)
T 1xbb_A           16 KLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEAN--DPALKDELLAEANVMQQLDNPYIVRMIGIC-EAESW   92 (291)
T ss_dssp             GGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-------CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-ESSSE
T ss_pred             hhhhhccCccccccCeeeEeeeecCCCceeeEEEEeeccccc--CHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-CCCCc
Confidence            4566666 899999999999954   2467899999975321  112356799999999999999999999999 56778


Q ss_pred             eEEEcccCCCCHHhHh
Q 041300          700 FLVYEFLERGSLAAIL  715 (716)
Q Consensus       700 ~lv~Ey~~~GsL~~~l  715 (716)
                      ++||||+++|+|.+++
T Consensus        93 ~lv~e~~~~~~L~~~l  108 (291)
T 1xbb_A           93 MLVMEMAELGPLNKYL  108 (291)
T ss_dssp             EEEEECCTTEEHHHHH
T ss_pred             EEEEEeCCCCCHHHHH
Confidence            9999999999999886

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=99.00  E-value=2.1e-10  Score=117.78  Aligned_cols=93  Identities=25%  Similarity=0.453  Sum_probs=71.4

Q ss_pred             HhhcCCcccccccCCCceEEEEEEcC----CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC
Q 041300          621 RETNDFDAEYCIGNGGHGSVYRAELP----SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA  696 (716)
Q Consensus       621 ~~~~~~~~~~~ig~g~~g~v~~~~~~----~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~  696 (716)
                      .....|...+.||+|+||.||+|...    .+..||||++.....  .....+.|.+|++++++++||||+++++++...
T Consensus        31 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~  108 (313)
T 3brb_A           31 IDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNS--SQREIEEFLSEAACMKDFSHPNVIRLLGVCIEM  108 (313)
T ss_dssp             CCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CC--CHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC-
T ss_pred             cCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEecccc--chhHHHHHHHHHHHHhcCCCCCeeeeeEEEeec
Confidence            34567888999999999999999653    244899999975322  122456799999999999999999999999775


Q ss_pred             Ce-----eeEEEcccCCCCHHhHh
Q 041300          697 QH-----SFLVYEFLERGSLAAIL  715 (716)
Q Consensus       697 ~~-----~~lv~Ey~~~GsL~~~l  715 (716)
                      +.     .++||||+++|+|.+++
T Consensus       109 ~~~~~~~~~~v~e~~~~~~L~~~l  132 (313)
T 3brb_A          109 SSQGIPKPMVILPFMKYGDLHTYL  132 (313)
T ss_dssp             ------CEEEEEECCTTCBHHHHH
T ss_pred             cccCCcccEEEEecccCCCHHHHH
Confidence            53     49999999999999876

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=99.00  E-value=4.3e-10  Score=114.55  Aligned_cols=89  Identities=25%  Similarity=0.449  Sum_probs=72.4

Q ss_pred             cCCcccccccCCCceEEEEEEcCC----CCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEe-CCe
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELPS----GEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSH-AQH  698 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~~----~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~-~~~  698 (716)
                      ..|...++||+|+||.||+|...+    ...||||.+....   .....+.|.+|++++++++|||||+++++|.. ++.
T Consensus        25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~  101 (298)
T 3f66_A           25 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRIT---DIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGS  101 (298)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCC---SHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSC
T ss_pred             eehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCC---CHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCc
Confidence            457788999999999999997532    2358999987532   22245679999999999999999999999754 457


Q ss_pred             eeEEEcccCCCCHHhHh
Q 041300          699 SFLVYEFLERGSLAAIL  715 (716)
Q Consensus       699 ~~lv~Ey~~~GsL~~~l  715 (716)
                      .++||||+++|+|.+++
T Consensus       102 ~~~v~e~~~~~~L~~~l  118 (298)
T 3f66_A          102 PLVVLPYMKHGDLRNFI  118 (298)
T ss_dssp             CEEEEECCTTCBHHHHH
T ss_pred             eEEEEeCCCCCCHHHHH
Confidence            89999999999999886

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=99.00  E-value=6.8e-10  Score=115.52  Aligned_cols=87  Identities=31%  Similarity=0.509  Sum_probs=75.0

Q ss_pred             HhhcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhc--CCCCCccccceEEEeCC-
Q 041300          621 RETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTE--IRHRNIVKFYGFCSHAQ-  697 (716)
Q Consensus       621 ~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~--l~H~niv~l~g~~~~~~-  697 (716)
                      ...++|...+.||+|+||.||+|+. +++.||||++...       ....+.+|++++..  ++||||+++++++...+ 
T Consensus        39 ~~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~-------~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~  110 (342)
T 1b6c_B           39 TIARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSR-------EERSWFREAEIYQTVMLRHENILGFIAADNKDNG  110 (342)
T ss_dssp             HHHHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECGG-------GHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCS
T ss_pred             cccccEEEEeeecCCCCcEEEEEEE-cCccEEEEEeCch-------hHHHHHHHHHHHHHhhcCCCcEEEEEeeecccCC
Confidence            3346799999999999999999987 5889999998642       34568889998887  79999999999998875 


Q ss_pred             ---eeeEEEcccCCCCHHhHh
Q 041300          698 ---HSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       698 ---~~~lv~Ey~~~GsL~~~l  715 (716)
                         ..++||||+++|+|.+++
T Consensus       111 ~~~~~~lv~e~~~~g~L~~~l  131 (342)
T 1b6c_B          111 TWTQLWLVSDYHEHGSLFDYL  131 (342)
T ss_dssp             SCCCEEEEECCCTTCBHHHHH
T ss_pred             ccceeEEEEeecCCCcHHHHH
Confidence               789999999999999886

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=99.00  E-value=6.9e-10  Score=115.18  Aligned_cols=86  Identities=28%  Similarity=0.470  Sum_probs=71.9

Q ss_pred             hhcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC--CCCCccccceEEEeC---
Q 041300          622 ETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI--RHRNIVKFYGFCSHA---  696 (716)
Q Consensus       622 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l--~H~niv~l~g~~~~~---  696 (716)
                      ..++|...+.||+|+||.||+|+.. ++.||||++...       ....+.+|.+++...  +|||||++++++...   
T Consensus        35 ~~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~-------~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~  106 (337)
T 3mdy_A           35 IAKQIQMVKQIGKGRYGEVWMGKWR-GEKVAVKVFFTT-------EEASWFRETEIYQTVLMRHENILGFIAADIKGTGS  106 (337)
T ss_dssp             HHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEEEGG-------GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGG
T ss_pred             cccceEEEeEeecCCCeEEEEEEEC-CceEEEEEEecc-------ccchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCC
Confidence            3457999999999999999999874 889999998642       234556666666655  999999999999887   


Q ss_pred             -CeeeEEEcccCCCCHHhHh
Q 041300          697 -QHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       697 -~~~~lv~Ey~~~GsL~~~l  715 (716)
                       ...++|||||++|+|.+++
T Consensus       107 ~~~~~lv~e~~~~g~L~~~l  126 (337)
T 3mdy_A          107 WTQLYLITDYHENGSLYDYL  126 (337)
T ss_dssp             GCEEEEEECCCTTCBHHHHH
T ss_pred             CCceEEEEeccCCCcHHHHh
Confidence             6789999999999999886

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=98.99  E-value=5.1e-10  Score=113.49  Aligned_cols=88  Identities=31%  Similarity=0.453  Sum_probs=73.6

Q ss_pred             hcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      .+.|...+.||+|+||.||+|...  ..||||++.....  .....+.|.+|++++++++||||+++++++ ..+..++|
T Consensus        23 ~~~y~~~~~lG~G~~g~Vy~~~~~--~~vavK~~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-~~~~~~lv   97 (289)
T 3og7_A           23 DGQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAP--TPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TAPQLAIV   97 (289)
T ss_dssp             TTSCEEEEEEEECSSEEEEEEESS--SEEEEEEESCSSC--CHHHHHHHHHHHHHHTTCCCTTBCCEEEEE-CSSSCEEE
T ss_pred             ccceeeeeEecCCCCeEEEEEEEc--CceEEEEEeccCC--CHHHHHHHHHHHHHHHhCCCCcEEEEEeec-cCCccEEE
Confidence            457889999999999999999864  3599999975432  222456799999999999999999999965 55668999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      |||+++|+|.+++
T Consensus        98 ~e~~~~~~L~~~l  110 (289)
T 3og7_A           98 TQWCEGSSLYHHL  110 (289)
T ss_dssp             EECCCEEEHHHHH
T ss_pred             EEecCCCcHHHHH
Confidence            9999999999876

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...

Probab=98.98  E-value=5.4e-10  Score=113.85  Aligned_cols=89  Identities=33%  Similarity=0.523  Sum_probs=72.5

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ++|...+.||+|+||.||+|... +++.||||++.......  .....+.+|++++++++||||+++++++..++..++|
T Consensus         3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   80 (299)
T 2r3i_A            3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETE--GVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLV   80 (299)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC----------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             chhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccch--hhHHHHHHHHHHHHHcCCCCeeeEEEEEecCCceEEE
Confidence            46888899999999999999754 68999999987532111  1235688999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      |||++ |+|.+++
T Consensus        81 ~e~~~-~~L~~~~   92 (299)
T 2r3i_A           81 FEFLH-QDLKKFM   92 (299)
T ss_dssp             EECCS-EEHHHHH
T ss_pred             EEccc-CCHHHHH
Confidence            99998 5888875

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=98.98  E-value=6.5e-10  Score=115.71  Aligned_cols=89  Identities=18%  Similarity=0.299  Sum_probs=76.5

Q ss_pred             cCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCC--CCccccceEEEeCCeeeE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRH--RNIVKFYGFCSHAQHSFL  701 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H--~niv~l~g~~~~~~~~~l  701 (716)
                      ..|...+.||+|+||.||++...+++.||||++.....  .....+.|.+|++++.+++|  ||||++++++..++..++
T Consensus         9 ~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~--~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~l   86 (343)
T 3dbq_A            9 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEA--DNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYM   86 (343)
T ss_dssp             CEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTC--CHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred             CEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeecccc--chHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEE
Confidence            46888999999999999999888899999999875432  22245679999999999987  999999999999999999


Q ss_pred             EEcccCCCCHHhHh
Q 041300          702 VYEFLERGSLAAIL  715 (716)
Q Consensus       702 v~Ey~~~GsL~~~l  715 (716)
                      ||| +.+|+|.+++
T Consensus        87 v~e-~~~~~L~~~l   99 (343)
T 3dbq_A           87 VME-CGNIDLNSWL   99 (343)
T ss_dssp             EEC-CCSEEHHHHH
T ss_pred             EEe-CCCCCHHHHH
Confidence            999 5688999876

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=98.98  E-value=7.8e-10  Score=112.59  Aligned_cols=88  Identities=19%  Similarity=0.356  Sum_probs=71.8

Q ss_pred             CCcccccccCCCceEEEEEEcC-CC---CEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCee-
Q 041300          625 DFDAEYCIGNGGHGSVYRAELP-SG---EVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHS-  699 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~~-~~---~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~-  699 (716)
                      .|...++||+|+||.||+|... ++   ..||||++....   .....+.|.+|++++++++|||||++++++.+.+.. 
T Consensus        22 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   98 (298)
T 3pls_A           22 VTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRIT---EMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLP   98 (298)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCC---SHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCC
T ss_pred             EEccCceeccCCCceEEEEEEecCCCceeeeeeeeccccc---cHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCc
Confidence            3556689999999999999743 22   379999987532   222456799999999999999999999999876655 


Q ss_pred             eEEEcccCCCCHHhHh
Q 041300          700 FLVYEFLERGSLAAIL  715 (716)
Q Consensus       700 ~lv~Ey~~~GsL~~~l  715 (716)
                      ++||||+.+|+|.+++
T Consensus        99 ~~v~e~~~~~~L~~~~  114 (298)
T 3pls_A           99 HVLLPYMCHGDLLQFI  114 (298)
T ss_dssp             EEEECCCTTCBHHHHH
T ss_pred             EEEEecccCCCHHHHH
Confidence            9999999999999876

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=98.98  E-value=2.6e-10  Score=117.86  Aligned_cols=92  Identities=27%  Similarity=0.508  Sum_probs=77.6

Q ss_pred             HHHhhcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEe-
Q 041300          619 IVRETNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSH-  695 (716)
Q Consensus       619 ~~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~-  695 (716)
                      +....+.|...+.||+|+||.||+|.. .+++.||||++.....     ....+.+|+.++.++ +||||+++++++.. 
T Consensus        19 l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-----~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~   93 (326)
T 2x7f_A           19 LRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGD-----EEEEIKQEINMLKKYSHHRNIATYYGAFIKK   93 (326)
T ss_dssp             CCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSS-----TTHHHHHHHHHHHHHCCSTTBCCEEEEEEEC
T ss_pred             ccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCcc-----cHHHHHHHHHHHHhccCCCCeeeeeeEEeec
Confidence            334567899999999999999999975 4689999999875321     236789999999999 89999999999977 


Q ss_pred             -----CCeeeEEEcccCCCCHHhHh
Q 041300          696 -----AQHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       696 -----~~~~~lv~Ey~~~GsL~~~l  715 (716)
                           .+..++||||+++|+|.+++
T Consensus        94 ~~~~~~~~~~lv~e~~~~~~L~~~l  118 (326)
T 2x7f_A           94 NPPGMDDQLWLVMEFCGAGSVTDLI  118 (326)
T ss_dssp             C--CCCCEEEEEEECCTTEEHHHHH
T ss_pred             cCccccceEEEEEEcCCCCcHHHHH
Confidence                 45789999999999999886

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=98.98  E-value=7.7e-10  Score=114.48  Aligned_cols=85  Identities=21%  Similarity=0.399  Sum_probs=74.3

Q ss_pred             cCCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCC-CCCccccceEEEe--CCee
Q 041300          624 NDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR-HRNIVKFYGFCSH--AQHS  699 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~-H~niv~l~g~~~~--~~~~  699 (716)
                      ++|...+.||+|+||.||+|. ..+++.||||++...       ..+.+.+|++++.+++ ||||+++++++..  ....
T Consensus        36 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-------~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~  108 (330)
T 3nsz_A           36 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV-------KKKKIKREIKILENLRGGPNIITLADIVKDPVSRTP  108 (330)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC-------CHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCE
T ss_pred             CceEEEEEecccCCeEEEEEEECCCCcEEEEEEeccc-------chHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCce
Confidence            568889999999999999996 457899999998742       3467899999999997 9999999999987  5568


Q ss_pred             eEEEcccCCCCHHhHh
Q 041300          700 FLVYEFLERGSLAAIL  715 (716)
Q Consensus       700 ~lv~Ey~~~GsL~~~l  715 (716)
                      ++||||+++|+|.+++
T Consensus       109 ~lv~e~~~~~~l~~~~  124 (330)
T 3nsz_A          109 ALVFEHVNNTDFKQLY  124 (330)
T ss_dssp             EEEEECCCCCCHHHHG
T ss_pred             EEEEeccCchhHHHHH
Confidence            9999999999998875

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=98.97  E-value=5.6e-10  Score=117.18  Aligned_cols=100  Identities=22%  Similarity=0.339  Sum_probs=80.6

Q ss_pred             hHHHHHHhhcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCcc-------chhhHHHHHHHHHHHhcCCCCCcc
Q 041300          615 VYDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCD-------QIADQKEFLTEVQALTEIRHRNIV  687 (716)
Q Consensus       615 ~~~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~-------~~~~~~~~~~ei~~l~~l~H~niv  687 (716)
                      ...++......|...+.||+|+||.||+|...++..||||++.......       .....+.+.+|++++++++|||||
T Consensus        13 ~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv   92 (362)
T 3pg1_A           13 LIAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNIL   92 (362)
T ss_dssp             HHHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBC
T ss_pred             HHHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCcc
Confidence            4567777889999999999999999999987779999999986532211       111236799999999999999999


Q ss_pred             ccceEEEeCC-----eeeEEEcccCCCCHHhHh
Q 041300          688 KFYGFCSHAQ-----HSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       688 ~l~g~~~~~~-----~~~lv~Ey~~~GsL~~~l  715 (716)
                      ++++++...+     ..|+||||++ |+|.+++
T Consensus        93 ~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~  124 (362)
T 3pg1_A           93 GLRDIFVHFEEPAMHKLYLVTELMR-TDLAQVI  124 (362)
T ss_dssp             CCSEEEEECCTTTCCEEEEEEECCS-EEHHHHH
T ss_pred             ceeeeEEeccCCCcceEEEEEccCC-CCHHHHH
Confidence            9999996532     5799999998 5777764

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=98.97  E-value=6.9e-10  Score=114.89  Aligned_cols=85  Identities=21%  Similarity=0.246  Sum_probs=73.4

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeCCeeeE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHSFL  701 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~~~~~l  701 (716)
                      .+|...+.||+|+||+||+|.. .+++.||||++.....      ...+.+|+++++++ +||||+++++++..++..++
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~------~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~l   82 (330)
T 2izr_A            9 PNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSR------APQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAM   82 (330)
T ss_dssp             TTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCS------SCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEE
T ss_pred             CCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccc------hHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEE
Confidence            5688899999999999999974 5789999999865321      23588999999999 99999999999999999999


Q ss_pred             EEcccCCCCHHhHh
Q 041300          702 VYEFLERGSLAAIL  715 (716)
Q Consensus       702 v~Ey~~~GsL~~~l  715 (716)
                      ||||+ +|+|.+++
T Consensus        83 v~e~~-~~~L~~~~   95 (330)
T 2izr_A           83 VLELL-GPSLEDLF   95 (330)
T ss_dssp             EEECC-CCBHHHHH
T ss_pred             EEEeC-CCCHHHHH
Confidence            99999 99999876

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=98.96  E-value=7.5e-10  Score=117.30  Aligned_cols=89  Identities=18%  Similarity=0.293  Sum_probs=76.1

Q ss_pred             cCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCC--CCCccccceEEEeCCeeeE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR--HRNIVKFYGFCSHAQHSFL  701 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~--H~niv~l~g~~~~~~~~~l  701 (716)
                      ..|...+.||+|+||.||++...+++.||||++.....  .....+.|.+|++++.+++  |||||++++++..++..|+
T Consensus        56 ~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~l  133 (390)
T 2zmd_A           56 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEA--DNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYM  133 (390)
T ss_dssp             EEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTC--CHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred             CceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccc--cHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEE
Confidence            35888999999999999999877799999999975432  1224567999999999996  5999999999999999999


Q ss_pred             EEcccCCCCHHhHh
Q 041300          702 VYEFLERGSLAAIL  715 (716)
Q Consensus       702 v~Ey~~~GsL~~~l  715 (716)
                      ||| +.+|+|.+++
T Consensus       134 v~E-~~~~~L~~~l  146 (390)
T 2zmd_A          134 VME-CGNIDLNSWL  146 (390)
T ss_dssp             EEE-CCSEEHHHHH
T ss_pred             EEe-cCCCCHHHHH
Confidence            999 6788999876

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=98.96  E-value=8.2e-10  Score=111.40  Aligned_cols=89  Identities=24%  Similarity=0.436  Sum_probs=73.2

Q ss_pred             hcCCcccccccCCCceEEEEEEcCC----CCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCe
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELPS----GEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQH  698 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~~----~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~  698 (716)
                      ..+|...+.||+|+||.||+|....    +..||||.+....   .....+.|.+|++++++++||||+++++++.+ +.
T Consensus        11 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~   86 (281)
T 3cc6_A           11 REDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDC---TLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEE-EP   86 (281)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTS---CHHHHHHHHHHHHHHHHHCCTTBCCEEEEECS-SS
T ss_pred             ccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEeccccc---CchHHHHHHHHHHHHHhCCCCCcceEEEEEcC-CC
Confidence            4578889999999999999997532    3369999987632   12245679999999999999999999999854 55


Q ss_pred             eeEEEcccCCCCHHhHh
Q 041300          699 SFLVYEFLERGSLAAIL  715 (716)
Q Consensus       699 ~~lv~Ey~~~GsL~~~l  715 (716)
                      .++||||+++|+|.+++
T Consensus        87 ~~~v~e~~~~~~L~~~l  103 (281)
T 3cc6_A           87 TWIIMELYPYGELGHYL  103 (281)
T ss_dssp             CEEEEECCTTCBHHHHH
T ss_pred             CEEEEecCCCCCHHHHH
Confidence            79999999999999876

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=98.96  E-value=2.7e-10  Score=118.12  Aligned_cols=93  Identities=22%  Similarity=0.278  Sum_probs=76.6

Q ss_pred             hcCCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccc----hhhHHHHHHHHHHHhcCCCCCccccceEEEeCC
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQ----IADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ  697 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~----~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~  697 (716)
                      ..+|...+.||+|+||.||+|. ..+++.||||++........    ....+.+.+|++++++++|||||++++++.+.+
T Consensus        23 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~~  102 (335)
T 3dls_A           23 SQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQG  102 (335)
T ss_dssp             HHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECSS
T ss_pred             ccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeCC
Confidence            4578899999999999999996 45688999999976432211    002235788999999999999999999999999


Q ss_pred             eeeEEEcccCCC-CHHhHh
Q 041300          698 HSFLVYEFLERG-SLAAIL  715 (716)
Q Consensus       698 ~~~lv~Ey~~~G-sL~~~l  715 (716)
                      ..++||||+.+| +|.+++
T Consensus       103 ~~~lv~e~~~~g~~l~~~~  121 (335)
T 3dls_A          103 FFQLVMEKHGSGLDLFAFI  121 (335)
T ss_dssp             EEEEEEECCTTSCBHHHHH
T ss_pred             EEEEEEEeCCCCccHHHHH
Confidence            999999999887 998875

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=98.96  E-value=4.7e-10  Score=114.70  Aligned_cols=92  Identities=20%  Similarity=0.258  Sum_probs=71.6

Q ss_pred             hcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEe--CCee
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSH--AQHS  699 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~--~~~~  699 (716)
                      .++|...+.||+|+||.||++.. .+++.||||++..............+.+|++++++++||||+++++++..  .+..
T Consensus         4 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   83 (305)
T 2wtk_C            4 IGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKM   83 (305)
T ss_dssp             -CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CE
T ss_pred             ccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeE
Confidence            35789999999999999999975 46889999999753211111234679999999999999999999999853  4578


Q ss_pred             eEEEcccCCCCHHhHh
Q 041300          700 FLVYEFLERGSLAAIL  715 (716)
Q Consensus       700 ~lv~Ey~~~GsL~~~l  715 (716)
                      ++||||+++| |.+++
T Consensus        84 ~lv~e~~~~~-l~~~~   98 (305)
T 2wtk_C           84 YMVMEYCVCG-MQEML   98 (305)
T ss_dssp             EEEEECCSEE-HHHHH
T ss_pred             EEEehhccCC-HHHHH
Confidence            9999999987 55543

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=98.96  E-value=6.6e-10  Score=114.82  Aligned_cols=88  Identities=23%  Similarity=0.472  Sum_probs=68.5

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCC----EEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCe
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGE----VVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQH  698 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~----~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~  698 (716)
                      .+|...++||+|+||.||+|... +++    .||+|.+.....   ....++|.+|++++++++|||||+++++|..++ 
T Consensus        15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-   90 (327)
T 3poz_A           15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATS---PKANKEILDEAYVMASVDNPHVCRLLGICLTST-   90 (327)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC----------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSS-
T ss_pred             HHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccC---HHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC-
Confidence            46888999999999999999753 444    468888764321   124568999999999999999999999998754 


Q ss_pred             eeEEEcccCCCCHHhHh
Q 041300          699 SFLVYEFLERGSLAAIL  715 (716)
Q Consensus       699 ~~lv~Ey~~~GsL~~~l  715 (716)
                      .++|+||+++|+|.+++
T Consensus        91 ~~~v~e~~~~g~L~~~l  107 (327)
T 3poz_A           91 VQLITQLMPFGCLLDYV  107 (327)
T ss_dssp             EEEEEECCTTCBHHHHH
T ss_pred             eEEEEEecCCCcHHHHH
Confidence            78999999999999876

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=98.96  E-value=5.7e-10  Score=115.32  Aligned_cols=90  Identities=16%  Similarity=0.208  Sum_probs=75.1

Q ss_pred             cCCccc-ccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeCCeee
Q 041300          624 NDFDAE-YCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHSF  700 (716)
Q Consensus       624 ~~~~~~-~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~~~~~  700 (716)
                      +.|... +.||+|+||.||+|... +++.||||++.......  ....++.+|+.++..+ +||||+++++++...+..+
T Consensus        28 ~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~--~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~~~~~  105 (327)
T 3lm5_A           28 NFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQ--DCRAEILHEIAVLELAKSCPRVINLHEVYENTSEII  105 (327)
T ss_dssp             HHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTE--ECHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEE
T ss_pred             hEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcch--HHHHHHHHHHHHHHhccCCCCEEEEEEEEEeCCeEE
Confidence            345554 78999999999999654 68999999997643222  1356799999999999 5699999999999999999


Q ss_pred             EEEcccCCCCHHhHh
Q 041300          701 LVYEFLERGSLAAIL  715 (716)
Q Consensus       701 lv~Ey~~~GsL~~~l  715 (716)
                      +|||||++|+|.+++
T Consensus       106 lv~e~~~~~~L~~~~  120 (327)
T 3lm5_A          106 LILEYAAGGEIFSLC  120 (327)
T ss_dssp             EEEECCTTEEGGGGG
T ss_pred             EEEEecCCCcHHHHH
Confidence            999999999999876

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=98.95  E-value=5.4e-11  Score=123.60  Aligned_cols=91  Identities=20%  Similarity=0.234  Sum_probs=69.2

Q ss_pred             cCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCc----cchhhHHHHHHHHHHHhcCC---------CCCccccc
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPC----DQIADQKEFLTEVQALTEIR---------HRNIVKFY  690 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~----~~~~~~~~~~~ei~~l~~l~---------H~niv~l~  690 (716)
                      .+|...+.||+|+||+||+|+. +|+.||||++......    ......+.+.+|++++++++         |||+|++.
T Consensus        20 ~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l~   98 (336)
T 2vuw_A           20 EKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGLN   98 (336)
T ss_dssp             HHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCEE
T ss_pred             ccchheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhhc
Confidence            4688889999999999999987 6899999999764321    01113467899999988886         77777666


Q ss_pred             eEEE-----------------e-------------CCeeeEEEcccCCCCHHhHh
Q 041300          691 GFCS-----------------H-------------AQHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       691 g~~~-----------------~-------------~~~~~lv~Ey~~~GsL~~~l  715 (716)
                      +.+.                 +             .+..|+|||||++|++.+.+
T Consensus        99 ~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~  153 (336)
T 2vuw_A           99 SVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQM  153 (336)
T ss_dssp             EEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGG
T ss_pred             ceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHH
Confidence            6543                 2             57889999999999766544

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=98.95  E-value=7.1e-10  Score=116.31  Aligned_cols=95  Identities=25%  Similarity=0.276  Sum_probs=79.4

Q ss_pred             hHHHHHHhhcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCC-----CCCccc
Q 041300          615 VYDEIVRETNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR-----HRNIVK  688 (716)
Q Consensus       615 ~~~~~~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~-----H~niv~  688 (716)
                      ++.+.....+.|...++||+|+||.||+|.. .+++.||||++...     ....+.+.+|++++.+++     |||||+
T Consensus        26 ~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-----~~~~~~~~~e~~~l~~l~~~~~~h~~iv~  100 (360)
T 3llt_A           26 SWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNI-----KKYTRSAKIEADILKKIQNDDINNNNIVK  100 (360)
T ss_dssp             CCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC-----HHHHHHHHHHHHHHHHTCCCSTTGGGBCC
T ss_pred             eeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccc-----hhhhhhhHHHHHHHHHhcccCCCCCCeec
Confidence            3444445567899999999999999999975 46889999998642     113466888999999986     999999


Q ss_pred             cceEEEeCCeeeEEEcccCCCCHHhHh
Q 041300          689 FYGFCSHAQHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       689 l~g~~~~~~~~~lv~Ey~~~GsL~~~l  715 (716)
                      +++++...+..++||||+ +|+|.+++
T Consensus       101 ~~~~~~~~~~~~lv~e~~-~~~L~~~~  126 (360)
T 3llt_A          101 YHGKFMYYDHMCLIFEPL-GPSLYEII  126 (360)
T ss_dssp             EEEEEEETTEEEEEECCC-CCBHHHHH
T ss_pred             ccceeeECCeeEEEEcCC-CCCHHHHH
Confidence            999999999999999999 99999876

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=98.95  E-value=2.9e-10  Score=120.06  Aligned_cols=91  Identities=16%  Similarity=0.163  Sum_probs=71.3

Q ss_pred             hcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHH---HHHhcCCCCCccccc-------e
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEV---QALTEIRHRNIVKFY-------G  691 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei---~~l~~l~H~niv~l~-------g  691 (716)
                      .+.|...+.||+|+||+||+|.. .+|+.||||++......... ..+.|.+|+   +.+++++|||||+++       +
T Consensus        72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~-~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~  150 (377)
T 3byv_A           72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSN-AIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFD  150 (377)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTT-HHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSE
T ss_pred             CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchH-HHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhh
Confidence            45688889999999999999985 46899999999753222222 457799999   566677899999999       6


Q ss_pred             EEEeCCe-----------------eeEEEcccCCCCHHhHh
Q 041300          692 FCSHAQH-----------------SFLVYEFLERGSLAAIL  715 (716)
Q Consensus       692 ~~~~~~~-----------------~~lv~Ey~~~GsL~~~l  715 (716)
                      ++..++.                 .|+||||| +|+|.+++
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l  190 (377)
T 3byv_A          151 LVKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFG  190 (377)
T ss_dssp             EEECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHH
T ss_pred             hhhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHH
Confidence            6665532                 78999999 68999886

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=98.95  E-value=4e-10  Score=119.25  Aligned_cols=86  Identities=20%  Similarity=0.338  Sum_probs=67.6

Q ss_pred             HhhcCCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC---
Q 041300          621 RETNDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA---  696 (716)
Q Consensus       621 ~~~~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~---  696 (716)
                      ....+|...+.||+|+||.||+|. ..+++.||||++....        ....+|+++++.++|||||++++++...   
T Consensus         4 ~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~--------~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~   75 (383)
T 3eb0_A            4 TSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDP--------RYKNRELDIMKVLDHVNIIKLVDYFYTTGDE   75 (383)
T ss_dssp             --CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCT--------TSCCHHHHHHTTCCCTTBCCEEEEEEEC---
T ss_pred             cccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCc--------chHHHHHHHHHHcCCCCccchhheeeecCcc
Confidence            445689999999999999999996 4578999999986532        1234799999999999999999998543   


Q ss_pred             -----------------------------------CeeeEEEcccCCCCHHhHh
Q 041300          697 -----------------------------------QHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       697 -----------------------------------~~~~lv~Ey~~~GsL~~~l  715 (716)
                                                         ...++|||||+ |+|.+.+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l  128 (383)
T 3eb0_A           76 EPKPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVL  128 (383)
T ss_dssp             ----------------------------------CCEEEEEECCCS-EEHHHHH
T ss_pred             cccccccccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHH
Confidence                                               23789999999 4776654

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=98.95  E-value=6.1e-10  Score=112.95  Aligned_cols=90  Identities=31%  Similarity=0.493  Sum_probs=66.1

Q ss_pred             cCCcccccccCCCceEEEEEEcC--CCC--EEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCee
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP--SGE--VVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHS  699 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~--~~~--~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~  699 (716)
                      .+|...+.||+|+||.||+|.+.  ++.  .||||++........ ...+.|.+|++++.+++||||+++++++..++ .
T Consensus        18 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-~   95 (291)
T 1u46_A           18 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQP-EAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP-M   95 (291)
T ss_dssp             GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------C-HHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-C
T ss_pred             hHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCH-HHHHHHHHHHHHHHhCCCCCcccEEEEEccCC-c
Confidence            46888999999999999999753  333  689999875432222 24567999999999999999999999997654 8


Q ss_pred             eEEEcccCCCCHHhHh
Q 041300          700 FLVYEFLERGSLAAIL  715 (716)
Q Consensus       700 ~lv~Ey~~~GsL~~~l  715 (716)
                      ++||||+++|+|.+++
T Consensus        96 ~~v~e~~~~~~L~~~l  111 (291)
T 1u46_A           96 KMVTELAPLGSLLDRL  111 (291)
T ss_dssp             EEEEECCTTCBHHHHH
T ss_pred             eeeEecccCCCHHHHH
Confidence            9999999999999876

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=98.94  E-value=2.7e-10  Score=117.65  Aligned_cols=88  Identities=23%  Similarity=0.359  Sum_probs=71.3

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ++|...+.||+|+||.||+|... +++.||||++.......   ....+.+|++++++++|||||++++++..++..++|
T Consensus         2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~---~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv   78 (324)
T 3mtl_A            2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEG---APCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLV   78 (324)
T ss_dssp             CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC---------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEE
T ss_pred             CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccc---cchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEE
Confidence            46788899999999999999754 68899999986532111   112466899999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      |||++ |+|.+++
T Consensus        79 ~e~~~-~~l~~~~   90 (324)
T 3mtl_A           79 FEYLD-KDLKQYL   90 (324)
T ss_dssp             EECCS-EEHHHHH
T ss_pred             ecccc-cCHHHHH
Confidence            99998 5887765

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=98.94  E-value=7.5e-10  Score=116.31  Aligned_cols=90  Identities=22%  Similarity=0.351  Sum_probs=68.3

Q ss_pred             hcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC----
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ----  697 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~----  697 (716)
                      ...|...+.||+|+||.||+|.. .+|+.||||++....  ......+.+.+|++++++++|||||++++++...+    
T Consensus        24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~--~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~  101 (367)
T 1cm8_A           24 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPF--QSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDD  101 (367)
T ss_dssp             BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTT--SSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTT
T ss_pred             cceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccc--cCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCcccc
Confidence            35688899999999999999964 468999999996532  12224567899999999999999999999997653    


Q ss_pred             --eeeEEEcccCCCCHHhHh
Q 041300          698 --HSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       698 --~~~lv~Ey~~~GsL~~~l  715 (716)
                        ..|+||||| +++|.+++
T Consensus       102 ~~~~~lv~e~~-~~~L~~~~  120 (367)
T 1cm8_A          102 FTDFYLVMPFM-GTDLGKLM  120 (367)
T ss_dssp             CCCCEEEEECC-SEEHHHHH
T ss_pred             CceEEEEEecC-CCCHHHHH
Confidence              459999999 78998875

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.94  E-value=4.6e-10  Score=128.04  Aligned_cols=89  Identities=28%  Similarity=0.459  Sum_probs=73.4

Q ss_pred             cCCcccccccCCCceEEEEEEcC--CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCe---
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP--SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQH---  698 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~--~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~---  698 (716)
                      +.|...++||+|+||.||+|...  +++.||||++....   .......|.+|++++.+++|||||++++++...+.   
T Consensus        80 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~  156 (681)
T 2pzi_A           80 GQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSG---DAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGD  156 (681)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSC---CHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSC
T ss_pred             CceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccC---CHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCC
Confidence            57889999999999999999754  58899999986532   12245678999999999999999999999987665   


Q ss_pred             --eeEEEcccCCCCHHhHh
Q 041300          699 --SFLVYEFLERGSLAAIL  715 (716)
Q Consensus       699 --~~lv~Ey~~~GsL~~~l  715 (716)
                        .|+|||||++|+|.+++
T Consensus       157 ~~~~lv~E~~~g~~L~~~~  175 (681)
T 2pzi_A          157 PVGYIVMEYVGGQSLKRSK  175 (681)
T ss_dssp             EEEEEEEECCCCEECC---
T ss_pred             ceeEEEEEeCCCCcHHHHH
Confidence              69999999999998765

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.92  E-value=1.3e-09  Score=113.21  Aligned_cols=83  Identities=20%  Similarity=0.266  Sum_probs=44.6

Q ss_pred             CCCCCEEEccCCcCCccCchhhc---CcCCCCEEECcCCcCccc----CChhhhCCCCCCEEECCCCcCccccchhccC-
Q 041300          404 LIELEYLDFSANKFNNSVPESLG---NLLKLHYLGLSNNQFVLE----LPKELEKLVQLSELDASHNLFGGEIPFQICS-  475 (716)
Q Consensus       404 l~~L~~L~Ls~N~l~~~~~~~~~---~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~-  475 (716)
                      +++|++|+|.+|.+.+..+..+.   .+++|++|+|+.|.+...    ++..+..+++|+.|++++|.++...-..+.. 
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a  330 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS  330 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence            45666666666665533222222   355666777766666542    2223344566777777777665443333332 


Q ss_pred             CCCCCEEECcCCc
Q 041300          476 LKSLEKLNLSHNN  488 (716)
Q Consensus       476 l~~L~~L~ls~N~  488 (716)
                      +  ...+++++++
T Consensus       331 l--g~~~~~~~~~  341 (362)
T 2ra8_A          331 L--PMKIDVSDSQ  341 (362)
T ss_dssp             C--CSEEECCSBC
T ss_pred             c--CCEEEecCCc
Confidence            2  3456777665

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=98.92  E-value=1.3e-09  Score=112.14  Aligned_cols=87  Identities=29%  Similarity=0.450  Sum_probs=67.7

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEE--------
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCS--------  694 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~--------  694 (716)
                      ..|...+.||+|+||.||+|... +++.||||++...   . ....+++.+|++++++++|||||++++++.        
T Consensus        11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~---~-~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~   86 (320)
T 2i6l_A           11 SRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLT---D-PQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTD   86 (320)
T ss_dssp             TTEEEEEECC-----CEEEEEETTTTEEEEEEEEECC---S-HHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC
T ss_pred             CceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecC---C-hHHHHHHHHHHHHHHhcCCCCeeEEEEecccccccccc
Confidence            46888899999999999999765 4889999998753   1 224567999999999999999999999873        


Q ss_pred             ------eCCeeeEEEcccCCCCHHhHh
Q 041300          695 ------HAQHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       695 ------~~~~~~lv~Ey~~~GsL~~~l  715 (716)
                            +.+..++||||++ |+|.+++
T Consensus        87 ~~~~~~~~~~~~lv~e~~~-~~L~~~~  112 (320)
T 2i6l_A           87 DVGSLTELNSVYIVQEYME-TDLANVL  112 (320)
T ss_dssp             ----CCSCSEEEEEEECCS-EEHHHHH
T ss_pred             ccccccccCceeEEeeccC-CCHHHHh
Confidence                  3467899999998 6998876

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=98.92  E-value=1.2e-09  Score=116.00  Aligned_cols=82  Identities=21%  Similarity=0.267  Sum_probs=67.2

Q ss_pred             CCccc-ccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHh-cCCCCCccccceEEEe----CC
Q 041300          625 DFDAE-YCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALT-EIRHRNIVKFYGFCSH----AQ  697 (716)
Q Consensus       625 ~~~~~-~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~-~l~H~niv~l~g~~~~----~~  697 (716)
                      +|... ++||+|+||+||++.. .+++.||||++...         ..+.+|++++. ..+|||||++++++..    .+
T Consensus        62 ~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~~---------~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~  132 (400)
T 1nxk_A           62 DYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC---------PKARREVELHWRASQCPHIVRIVDVYENLYAGRK  132 (400)
T ss_dssp             TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS---------HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEE
T ss_pred             cceeccceeeeccCeEEEEEEECCCCCEEEEEEeCcc---------hhHHHHHHHHHHhcCCCCcceEeEEEeecccCCc
Confidence            45554 6899999999999964 46889999998641         34678888874 4589999999999876    55


Q ss_pred             eeeEEEcccCCCCHHhHh
Q 041300          698 HSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       698 ~~~lv~Ey~~~GsL~~~l  715 (716)
                      ..|+|||||++|+|.+++
T Consensus       133 ~~~lv~E~~~gg~L~~~l  150 (400)
T 1nxk_A          133 CLLIVMECLDGGELFSRI  150 (400)
T ss_dssp             EEEEEEECCCSEEHHHHH
T ss_pred             EEEEEEEeCCCCcHHHHH
Confidence            689999999999999886

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=98.91  E-value=9.9e-10  Score=118.13  Aligned_cols=90  Identities=23%  Similarity=0.431  Sum_probs=74.8

Q ss_pred             hcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC-----
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA-----  696 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~-----  696 (716)
                      .++|...++||+|+||.||+|.. .+++.||||++....  ......+.+.+|++++++++|||||++++++...     
T Consensus        25 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~--~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~  102 (432)
T 3n9x_A           25 PDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMF--EDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKF  102 (432)
T ss_dssp             CTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTT--TSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTC
T ss_pred             cCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchh--cChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcC
Confidence            35789999999999999999964 468899999997532  2222456799999999999999999999999776     


Q ss_pred             CeeeEEEcccCCCCHHhHh
Q 041300          697 QHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       697 ~~~~lv~Ey~~~GsL~~~l  715 (716)
                      +..|+|||||+ |+|.+++
T Consensus       103 ~~~~lv~e~~~-~~L~~~~  120 (432)
T 3n9x_A          103 DELYIVLEIAD-SDLKKLF  120 (432)
T ss_dssp             CCEEEEEECCS-EEHHHHH
T ss_pred             CeEEEEEecCC-cCHHHHH
Confidence            56899999997 5898875

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=98.91  E-value=1.6e-09  Score=122.34  Aligned_cols=89  Identities=25%  Similarity=0.434  Sum_probs=73.7

Q ss_pred             hcCCcccccccCCCceEEEEEEcCC----CCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCe
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELPS----GEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQH  698 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~~----~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~  698 (716)
                      ...|...+.||+|+||.||+|....    +..||||++....   .....+.|.+|+.++++++|||||+++|++. .+.
T Consensus       389 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~  464 (656)
T 2j0j_A          389 RERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCT---SDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENP  464 (656)
T ss_dssp             GGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTT---CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSS
T ss_pred             cccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccC---CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-cCc
Confidence            4568888999999999999997632    4579999986532   1224567999999999999999999999984 566


Q ss_pred             eeEEEcccCCCCHHhHh
Q 041300          699 SFLVYEFLERGSLAAIL  715 (716)
Q Consensus       699 ~~lv~Ey~~~GsL~~~l  715 (716)
                      .++|||||++|+|.+++
T Consensus       465 ~~lv~E~~~~g~L~~~l  481 (656)
T 2j0j_A          465 VWIIMELCTLGELRSFL  481 (656)
T ss_dssp             CEEEEECCTTCBHHHHH
T ss_pred             eEEEEEcCCCCcHHHHH
Confidence            89999999999999886

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=98.91  E-value=2e-09  Score=109.70  Aligned_cols=83  Identities=20%  Similarity=0.286  Sum_probs=69.0

Q ss_pred             cCCccc-ccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHH-hcCCCCCccccceEEEe----C
Q 041300          624 NDFDAE-YCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQAL-TEIRHRNIVKFYGFCSH----A  696 (716)
Q Consensus       624 ~~~~~~-~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l-~~l~H~niv~l~g~~~~----~  696 (716)
                      ++|... ++||+|+||.||++.. .+++.||||+++..         ..+.+|++++ +..+||||+++++++..    .
T Consensus        17 ~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~---------~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~   87 (299)
T 3m2w_A           17 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC---------PKARREVELHWRASQCPHIVRIVDVYENLYAGR   87 (299)
T ss_dssp             GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS---------HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTE
T ss_pred             cchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEeccc---------HHHHHHHHHHHHhccCCCchhHHhhhhhhcCCC
Confidence            345554 7899999999999964 56899999998641         3577888887 66699999999999977    6


Q ss_pred             CeeeEEEcccCCCCHHhHh
Q 041300          697 QHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       697 ~~~~lv~Ey~~~GsL~~~l  715 (716)
                      ...++||||+++|+|.+++
T Consensus        88 ~~~~lv~e~~~~~~L~~~l  106 (299)
T 3m2w_A           88 KCLLIVMECLDGGELFSRI  106 (299)
T ss_dssp             EEEEEEECCCCSCBHHHHH
T ss_pred             ceEEEEEeecCCCcHHHHH
Confidence            6789999999999999876

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=98.91  E-value=7.4e-10  Score=114.37  Aligned_cols=88  Identities=23%  Similarity=0.379  Sum_probs=70.4

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCC----EEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCe
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGE----VVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQH  698 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~----~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~  698 (716)
                      .+|...++||+|+||+||+|... ++.    .||+|.+.......   ..+.+.+|+.++++++|||||+++++|. .+.
T Consensus        13 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~---~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~   88 (325)
T 3kex_A           13 TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQ---SFQAVTDHMLAIGSLDHAHIVRLLGLCP-GSS   88 (325)
T ss_dssp             TTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCS---CBCSCCHHHHHHHTCCCTTBCCEEEEEC-BSS
T ss_pred             hHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHH---HHHHHHHHHHHHhcCCCCCcCeEEEEEc-CCc
Confidence            46888899999999999999753 444    38888875432111   2245788999999999999999999985 566


Q ss_pred             eeEEEcccCCCCHHhHh
Q 041300          699 SFLVYEFLERGSLAAIL  715 (716)
Q Consensus       699 ~~lv~Ey~~~GsL~~~l  715 (716)
                      .++||||+++|+|.+++
T Consensus        89 ~~~v~e~~~~~~L~~~l  105 (325)
T 3kex_A           89 LQLVTQYLPLGSLLDHV  105 (325)
T ss_dssp             EEEEEECCTTCBSHHHH
T ss_pred             cEEEEEeCCCCCHHHHH
Confidence            89999999999999876

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=98.91  E-value=1.5e-09  Score=115.01  Aligned_cols=90  Identities=29%  Similarity=0.533  Sum_probs=66.5

Q ss_pred             hcCCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCC-CCCccccceEEEeCC--e
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR-HRNIVKFYGFCSHAQ--H  698 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~-H~niv~l~g~~~~~~--~  698 (716)
                      ..+|...+.||+|+||.||+|. ..+++.||||++....  ......+.+.+|+.++.++. |||||++++++...+  .
T Consensus         8 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~--~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~   85 (388)
T 3oz6_A            8 LRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAF--QNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRD   85 (388)
T ss_dssp             HTTEEEEEC-------CEEEEEETTTCCEEEEEEECC----CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSC
T ss_pred             cCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccc--cChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCE
Confidence            4678999999999999999996 4568999999986532  22224567889999999997 999999999998654  6


Q ss_pred             eeEEEcccCCCCHHhHh
Q 041300          699 SFLVYEFLERGSLAAIL  715 (716)
Q Consensus       699 ~~lv~Ey~~~GsL~~~l  715 (716)
                      .|+|||||+ |+|.+++
T Consensus        86 ~~lv~e~~~-~~L~~~~  101 (388)
T 3oz6_A           86 VYLVFDYME-TDLHAVI  101 (388)
T ss_dssp             EEEEEECCS-EEHHHHH
T ss_pred             EEEEecccC-cCHHHHH
Confidence            799999998 5888765

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=98.90  E-value=9.6e-10  Score=119.33  Aligned_cols=89  Identities=24%  Similarity=0.408  Sum_probs=64.6

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC-----C
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA-----Q  697 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~-----~  697 (716)
                      +.|...++||+|+||+||+|.. .+++.||||++....  ......+.+.+|++++++++|||||++++++...     .
T Consensus        53 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~--~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~  130 (458)
T 3rp9_A           53 DRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVF--EDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFD  130 (458)
T ss_dssp             TTEEECCC-------CEEEEEECC--CEEEEEEECSTT--SSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCC
T ss_pred             CCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhh--cCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCc
Confidence            5788999999999999999964 468999999996532  2222456799999999999999999999999543     4


Q ss_pred             eeeEEEcccCCCCHHhHh
Q 041300          698 HSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       698 ~~~lv~Ey~~~GsL~~~l  715 (716)
                      ..|+|||||. |+|.+++
T Consensus       131 ~~~lv~e~~~-~~L~~~~  147 (458)
T 3rp9_A          131 ELYVVLEIAD-SDFKKLF  147 (458)
T ss_dssp             CEEEEECCCS-EEHHHHH
T ss_pred             eEEEEEeccc-cchhhhc
Confidence            6899999985 6888765

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=98.90  E-value=1.1e-09  Score=114.22  Aligned_cols=92  Identities=25%  Similarity=0.459  Sum_probs=69.6

Q ss_pred             hcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccch-hhHHHHHHHHHHHhcCCCCCccccceEEEeCCeee
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQI-ADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSF  700 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~-~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~  700 (716)
                      ...|...+.||+|+||.||+|... +|+.||||++......... ...+.+.+|++++++++|||||++++++...+..+
T Consensus         9 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   88 (346)
T 1ua2_A            9 AKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNIS   88 (346)
T ss_dssp             ----CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCE
T ss_pred             hcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCCceE
Confidence            467889999999999999999764 5899999999753221111 01246889999999999999999999999999999


Q ss_pred             EEEcccCCCCHHhHh
Q 041300          701 LVYEFLERGSLAAIL  715 (716)
Q Consensus       701 lv~Ey~~~GsL~~~l  715 (716)
                      +|||||++ +|.+++
T Consensus        89 lv~e~~~~-~l~~~~  102 (346)
T 1ua2_A           89 LVFDFMET-DLEVII  102 (346)
T ss_dssp             EEEECCSE-EHHHHH
T ss_pred             EEEEcCCC-CHHHHH
Confidence            99999996 787765

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=98.90  E-value=3.8e-10  Score=116.16  Aligned_cols=92  Identities=24%  Similarity=0.393  Sum_probs=76.6

Q ss_pred             HhhcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeee
Q 041300          621 RETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSF  700 (716)
Q Consensus       621 ~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~  700 (716)
                      ....+|...+.||+|+||.||+|....  .||||++........  ..+.|.+|++++++++||||+++++++..++..+
T Consensus        30 i~~~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~~--~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~  105 (319)
T 2y4i_B           30 IPFEQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNED--QLKAFKREVMAYRQTRHENVVLFMGACMSPPHLA  105 (319)
T ss_dssp             SCCSCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCCC--CCCCCCTTGGGGTTCCCTTBCCCCEEEECSSCEE
T ss_pred             CCHHHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCHH--HHHHHHHHHHHHhcCCCCCEeEEEEEEecCCceE
Confidence            345678899999999999999998643  499999875432111  2345888999999999999999999999999999


Q ss_pred             EEEcccCCCCHHhHhC
Q 041300          701 LVYEFLERGSLAAILS  716 (716)
Q Consensus       701 lv~Ey~~~GsL~~~l~  716 (716)
                      +||||+++|+|.++++
T Consensus       106 iv~e~~~~~~L~~~l~  121 (319)
T 2y4i_B          106 IITSLCKGRTLYSVVR  121 (319)
T ss_dssp             EECBCCCSEEHHHHTT
T ss_pred             EEeecccCCcHHHHHH
Confidence            9999999999999873

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=98.90  E-value=6.8e-10  Score=125.85  Aligned_cols=92  Identities=20%  Similarity=0.311  Sum_probs=76.7

Q ss_pred             hcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeCCeee
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHSF  700 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~~~~~  700 (716)
                      ..+|...++||+|+||+||+|+.. +++.||||++.+...... ...+.+.+|..++..+ +||+|+++++++.+.+..|
T Consensus       340 ~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~-~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~  418 (674)
T 3pfq_A          340 LTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQD-DDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY  418 (674)
T ss_dssp             CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHT-TTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEE
T ss_pred             ccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccH-HHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEE
Confidence            467999999999999999999754 588999999975321111 1345688899999988 7999999999999999999


Q ss_pred             EEEcccCCCCHHhHh
Q 041300          701 LVYEFLERGSLAAIL  715 (716)
Q Consensus       701 lv~Ey~~~GsL~~~l  715 (716)
                      +|||||++|+|.+++
T Consensus       419 lV~E~~~gg~L~~~l  433 (674)
T 3pfq_A          419 FVMEYVNGGDLMYHI  433 (674)
T ss_dssp             EEEECCCSCBHHHHH
T ss_pred             EEEeCcCCCcHHHHH
Confidence            999999999999876

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=98.90  E-value=1.3e-09  Score=118.20  Aligned_cols=89  Identities=21%  Similarity=0.360  Sum_probs=72.0

Q ss_pred             hcCCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC----
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ----  697 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~----  697 (716)
                      .+.|...+.||+|+||+||+|. ..+++.||||++....  ......+.+.+|+++++.++|||||++++++...+    
T Consensus        61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~--~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~  138 (464)
T 3ttj_A           61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPF--QNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEE  138 (464)
T ss_dssp             ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGG--GSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTT
T ss_pred             cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccc--cChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCcccc
Confidence            4578899999999999999995 4468899999997532  12224567899999999999999999999996543    


Q ss_pred             --eeeEEEcccCCCCHHhH
Q 041300          698 --HSFLVYEFLERGSLAAI  714 (716)
Q Consensus       698 --~~~lv~Ey~~~GsL~~~  714 (716)
                        ..|+|||||+++ |.+.
T Consensus       139 ~~~~~lv~E~~~~~-l~~~  156 (464)
T 3ttj_A          139 FQDVYLVMELMDAN-LCQV  156 (464)
T ss_dssp             CCEEEEEEECCSEE-HHHH
T ss_pred             CCeEEEEEeCCCCC-HHHH
Confidence              569999999875 5544

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=98.90  E-value=1.7e-09  Score=109.49  Aligned_cols=90  Identities=20%  Similarity=0.402  Sum_probs=69.8

Q ss_pred             hcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL  701 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l  701 (716)
                      .++|...+.||+|+||.||+|.. .+++.||||++.....  .....+.+..+...++.++||||+++++++.+++..++
T Consensus         6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~l   83 (290)
T 3fme_A            6 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVN--SQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWI   83 (290)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---C--HHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEE
T ss_pred             HHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccC--cHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEE
Confidence            35788899999999999999975 5788999999975321  11122334455556888999999999999999999999


Q ss_pred             EEcccCCCCHHhHh
Q 041300          702 VYEFLERGSLAAIL  715 (716)
Q Consensus       702 v~Ey~~~GsL~~~l  715 (716)
                      ||||+++ +|.+++
T Consensus        84 v~e~~~~-~l~~~l   96 (290)
T 3fme_A           84 CMELMDT-SLDKFY   96 (290)
T ss_dssp             EEECCSE-EHHHHH
T ss_pred             EEehhcc-chHHHH
Confidence            9999984 887664

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=98.89  E-value=1.6e-09  Score=116.49  Aligned_cols=83  Identities=24%  Similarity=0.308  Sum_probs=69.9

Q ss_pred             CCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeCCeeeEEE
Q 041300          625 DFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      .|...++||+|+||+||.+...+|+.||||++...       ..+.+.+|++++.++ +|||||++++++.+++..|+||
T Consensus        16 ~~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~-------~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~   88 (434)
T 2rio_A           16 LVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLID-------FCDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIAL   88 (434)
T ss_dssp             CEEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGG-------GHHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEE
T ss_pred             eeeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHH-------HHHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEE
Confidence            34556889999999997765567999999998642       235678999999876 8999999999999999999999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      |||+ |+|.+++
T Consensus        89 E~~~-gsL~~~l   99 (434)
T 2rio_A           89 ELCN-LNLQDLV   99 (434)
T ss_dssp             CCCS-EEHHHHH
T ss_pred             ecCC-CCHHHHH
Confidence            9996 6999876

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=98.89  E-value=2.1e-09  Score=112.26  Aligned_cols=89  Identities=28%  Similarity=0.488  Sum_probs=72.3

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC------
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA------  696 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~------  696 (716)
                      .+|...+.||+|+||.||+|.. .+++.||||++........  ....+.+|++++++++|||||++++++...      
T Consensus        17 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~--~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   94 (351)
T 3mi9_A           17 SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEG--FPITALREIKILQLLKHENVVNLIEICRTKASPYNR   94 (351)
T ss_dssp             GGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSS--SCHHHHHHHHHHHHCCCTTBCCEEEEEEEC------
T ss_pred             cceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEeccccccc--chHHHHHHHHHHHhccCCCcccHhheeecccccccc
Confidence            5788999999999999999975 5689999999865432221  245688999999999999999999999773      


Q ss_pred             --CeeeEEEcccCCCCHHhHh
Q 041300          697 --QHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       697 --~~~~lv~Ey~~~GsL~~~l  715 (716)
                        +..++|||||++ +|.+.+
T Consensus        95 ~~~~~~lv~e~~~~-~l~~~l  114 (351)
T 3mi9_A           95 CKGSIYLVFDFCEH-DLAGLL  114 (351)
T ss_dssp             --CEEEEEEECCSE-EHHHHH
T ss_pred             CCceEEEEEeccCC-CHHHHH
Confidence              467999999986 665543

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=98.88  E-value=2e-09  Score=113.30  Aligned_cols=90  Identities=20%  Similarity=0.338  Sum_probs=73.3

Q ss_pred             hcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC----
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ----  697 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~----  697 (716)
                      ..+|...+.||+|+||.||+|.. .+++.||||++.....  .....+.+.+|+.+++.++|||||++++++...+    
T Consensus        24 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~  101 (371)
T 2xrw_A           24 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQ--NQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEE  101 (371)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTS--SHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTT
T ss_pred             hhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccC--ChHHHHHHHHHHHHHHhcCCCCccceEEeecccccccc
Confidence            35788999999999999999964 4688999999975321  1224567899999999999999999999997654    


Q ss_pred             --eeeEEEcccCCCCHHhHh
Q 041300          698 --HSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       698 --~~~lv~Ey~~~GsL~~~l  715 (716)
                        ..++|||||++ +|.+++
T Consensus       102 ~~~~~lv~e~~~~-~l~~~~  120 (371)
T 2xrw_A          102 FQDVYIVMELMDA-NLCQVI  120 (371)
T ss_dssp             CCEEEEEEECCSE-EHHHHH
T ss_pred             ccceEEEEEcCCC-CHHHHH
Confidence              67999999985 676654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.88  E-value=1.4e-09  Score=112.84  Aligned_cols=155  Identities=21%  Similarity=0.232  Sum_probs=84.7

Q ss_pred             ccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccC--CCCCCCEEEccC--CcCCcc-----Cch
Q 041300          353 IGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIG--SLIELEYLDFSA--NKFNNS-----VPE  423 (716)
Q Consensus       353 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~Ls~--N~l~~~-----~~~  423 (716)
                      +..+++|+.|++++|.-. .++. + .+++|+.|++..+.++......+.  .+++|+.|+|+.  |...+.     +..
T Consensus       168 l~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~  244 (362)
T 2ra8_A          168 LDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP  244 (362)
T ss_dssp             HHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred             HhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence            344455555555544211 1121 2 245566666655554422222222  455666666542  111110     011


Q ss_pred             hh--cCcCCCCEEECcCCcCcccCChhhh---CCCCCCEEECCCCcCcccc----chhccCCCCCCEEECcCCcCcccCC
Q 041300          424 SL--GNLLKLHYLGLSNNQFVLELPKELE---KLVQLSELDASHNLFGGEI----PFQICSLKSLEKLNLSHNNLSGLIP  494 (716)
Q Consensus       424 ~~--~~l~~L~~L~Ls~N~l~~~~~~~~~---~l~~L~~L~ls~N~l~~~~----p~~~~~l~~L~~L~ls~N~l~~~~~  494 (716)
                      .+  ..+++|+.|+|++|.+....+..+.   .+++|++|+|+.|.+.+..    +..+..+++|+.|++++|.|+...-
T Consensus       245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~  324 (362)
T 2ra8_A          245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMK  324 (362)
T ss_dssp             GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHH
T ss_pred             HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHH
Confidence            12  2467899999988888754333332   4678999999999887643    3333456889999999998874432


Q ss_pred             cCCcC-CCCCCEEEccCCc
Q 041300          495 NCFEG-MHGLSIIDISDNQ  512 (716)
Q Consensus       495 ~~~~~-~~~L~~l~ls~N~  512 (716)
                      ..+.. +  ...+++++|+
T Consensus       325 ~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          325 KELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHHHC--CSEEECCSBC
T ss_pred             HHHHHHc--CCEEEecCCc
Confidence            33332 2  3567888777

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=98.87  E-value=3.7e-09  Score=109.66  Aligned_cols=85  Identities=29%  Similarity=0.450  Sum_probs=67.5

Q ss_pred             hcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHH--HhcCCCCCccccceEEEeC----
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQA--LTEIRHRNIVKFYGFCSHA----  696 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~--l~~l~H~niv~l~g~~~~~----  696 (716)
                      .++|...+.||+|+||.||+|+. +++.||||++...       ....+..|.++  +..++||||+++++++...    
T Consensus        12 ~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~-------~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~   83 (336)
T 3g2f_A           12 LDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFA-------NRQNFINEKNIYRVPLMEHDNIARFIVGDERVTADG   83 (336)
T ss_dssp             TTSEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEEGG-------GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTS
T ss_pred             hHHhheeeecccCCCeEEEEEEE-CCeEEEEEEeecc-------chhhHHHHHHHHHHHhccCcchhhheecccccccCC
Confidence            35788899999999999999976 6789999998642       23445555555  4458999999999876542    


Q ss_pred             -CeeeEEEcccCCCCHHhHh
Q 041300          697 -QHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       697 -~~~~lv~Ey~~~GsL~~~l  715 (716)
                       ...++|||||++|+|.+++
T Consensus        84 ~~~~~lv~e~~~~g~L~~~l  103 (336)
T 3g2f_A           84 RMEYLLVMEYYPNGSLXKYL  103 (336)
T ss_dssp             CEEEEEEECCCTTCBHHHHH
T ss_pred             CceEEEEEecCCCCcHHHHH
Confidence             2568999999999999886

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=98.87  E-value=3.3e-09  Score=109.48  Aligned_cols=88  Identities=23%  Similarity=0.470  Sum_probs=72.0

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCC----EEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCe
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGE----VVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQH  698 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~----~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~  698 (716)
                      .+|...++||+|+||.||+|... +++    .||+|.+......   ...+++.+|+.++++++|||||++++++..+. 
T Consensus        15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~---~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-   90 (327)
T 3lzb_A           15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSP---KANKEILDEAYVMASVDNPHVCRLLGICLTST-   90 (327)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSC---CCHHHHHHHHHHHTTCCBTTBCCCCEEEESSS-
T ss_pred             hHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCH---HHHHHHHHHHHHHHhCCCCCeeEEEEEEecCC-
Confidence            56888999999999999999743 444    4678877643221   14578999999999999999999999998654 


Q ss_pred             eeEEEcccCCCCHHhHh
Q 041300          699 SFLVYEFLERGSLAAIL  715 (716)
Q Consensus       699 ~~lv~Ey~~~GsL~~~l  715 (716)
                      .++|+||+++|+|.+++
T Consensus        91 ~~~v~~~~~~g~L~~~l  107 (327)
T 3lzb_A           91 VQLITQLMPFGCLLDYV  107 (327)
T ss_dssp             EEEEECCCSSCBHHHHH
T ss_pred             ceEEEEecCCCcHHHHH
Confidence            78999999999999876

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=98.87  E-value=2.4e-09  Score=111.87  Aligned_cols=89  Identities=24%  Similarity=0.439  Sum_probs=73.6

Q ss_pred             hcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC-----
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA-----  696 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~-----  696 (716)
                      .++|...+.||+|+||.||+|... +|+.||||++....   .......+.+|++++++++|||||++++++...     
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~   86 (353)
T 2b9h_A           10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFD---KPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENF   86 (353)
T ss_dssp             CTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCS---SHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTC
T ss_pred             ccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccc---cchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCcc
Confidence            457889999999999999999754 68899999996532   222456788999999999999999999998764     


Q ss_pred             CeeeEEEcccCCCCHHhHh
Q 041300          697 QHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       697 ~~~~lv~Ey~~~GsL~~~l  715 (716)
                      ...++||||++ |+|.+++
T Consensus        87 ~~~~lv~e~~~-~~L~~~~  104 (353)
T 2b9h_A           87 NEVYIIQELMQ-TDLHRVI  104 (353)
T ss_dssp             CCEEEEECCCS-EEHHHHH
T ss_pred             ceEEEEEeccC-ccHHHHH
Confidence            56899999998 5888765

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=98.86  E-value=2.5e-09  Score=112.52  Aligned_cols=90  Identities=27%  Similarity=0.392  Sum_probs=74.0

Q ss_pred             hcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCee--
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHS--  699 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~--  699 (716)
                      ...|...+.||+|+||.||+|.. .+|+.||||++.....  .....+.+.+|++++++++|||||++++++...+..  
T Consensus        41 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~  118 (371)
T 4exu_A           41 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQ--SEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRN  118 (371)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTS--SHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTT
T ss_pred             cccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEeccccc--chhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCccc
Confidence            35788899999999999999964 4688999999975322  222456789999999999999999999999877654  


Q ss_pred             ----eEEEcccCCCCHHhHh
Q 041300          700 ----FLVYEFLERGSLAAIL  715 (716)
Q Consensus       700 ----~lv~Ey~~~GsL~~~l  715 (716)
                          ++||||++ |+|.+++
T Consensus       119 ~~~~~lv~e~~~-~~l~~~~  137 (371)
T 4exu_A          119 FYDFYLVMPFMQ-TDLQKIM  137 (371)
T ss_dssp             CCCCEEEEECCC-EEHHHHT
T ss_pred             ceeEEEEEcccc-ccHHHHh
Confidence                99999998 5887764

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=98.86  E-value=5.5e-10  Score=124.20  Aligned_cols=89  Identities=25%  Similarity=0.410  Sum_probs=73.4

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEe------C
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSH------A  696 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~------~  696 (716)
                      +.|...+.||+|+||.||+|.. .+|+.||||++....   .....+.|.+|++++.+++|||||++++++..      .
T Consensus        14 grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~---~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~   90 (676)
T 3qa8_A           14 GPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQEL---SPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPN   90 (676)
T ss_dssp             ---CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCC---CHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTT
T ss_pred             CCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccC---CHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCC
Confidence            5799999999999999999965 468899999987532   12245679999999999999999999998755      5


Q ss_pred             CeeeEEEcccCCCCHHhHh
Q 041300          697 QHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       697 ~~~~lv~Ey~~~GsL~~~l  715 (716)
                      +..++|||||++|+|.+++
T Consensus        91 ~~~~LVmEy~~ggsL~~~L  109 (676)
T 3qa8_A           91 DLPLLAMEYCEGGDLRKYL  109 (676)
T ss_dssp             SSCCCEEECCSSCBHHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHH
Confidence            6779999999999999876

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=98.85  E-value=3.1e-09  Score=109.01  Aligned_cols=91  Identities=18%  Similarity=0.272  Sum_probs=77.3

Q ss_pred             hhcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCC--CCCccccceEEEeCCee
Q 041300          622 ETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR--HRNIVKFYGFCSHAQHS  699 (716)
Q Consensus       622 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~--H~niv~l~g~~~~~~~~  699 (716)
                      ....|...+.||+|+||.||++...+++.||||++......  ....+.+.+|++++.+++  ||||+++++++..++..
T Consensus        26 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~--~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~  103 (313)
T 3cek_A           26 KGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEAD--NQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYI  103 (313)
T ss_dssp             TTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCC--HHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSSEE
T ss_pred             ccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEecccccc--ccchHHHHHHHHHHHhccccCCceEEEEEEeecCCEE
Confidence            34578899999999999999998878999999999753321  224567999999999997  59999999999999999


Q ss_pred             eEEEcccCCCCHHhHh
Q 041300          700 FLVYEFLERGSLAAIL  715 (716)
Q Consensus       700 ~lv~Ey~~~GsL~~~l  715 (716)
                      ++||| +.+|+|.+++
T Consensus       104 ~lv~e-~~~~~L~~~l  118 (313)
T 3cek_A          104 YMVME-CGNIDLNSWL  118 (313)
T ss_dssp             EEEEC-CCSEEHHHHH
T ss_pred             EEEEe-cCCCcHHHHH
Confidence            99999 6788998876

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=98.85  E-value=3.5e-09  Score=111.12  Aligned_cols=89  Identities=24%  Similarity=0.298  Sum_probs=73.3

Q ss_pred             hcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC----
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ----  697 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~----  697 (716)
                      ...|...+.||+|+||.||+|.. .++..||||++....   .....+.+.+|++++.+++|||||++++++....    
T Consensus        26 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~  102 (364)
T 3qyz_A           26 GPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFE---HQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQM  102 (364)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTT---CHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTC
T ss_pred             cccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEecccc---CcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCcccc
Confidence            35789999999999999999964 468899999997532   2224467999999999999999999999997653    


Q ss_pred             -eeeEEEcccCCCCHHhHh
Q 041300          698 -HSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       698 -~~~lv~Ey~~~GsL~~~l  715 (716)
                       ..|+||||++ |+|.+++
T Consensus       103 ~~~~iv~e~~~-~~L~~~l  120 (364)
T 3qyz_A          103 KDVYIVQDLME-TDLYKLL  120 (364)
T ss_dssp             CCEEEEEECCS-EEHHHHH
T ss_pred             ceEEEEEcccC-cCHHHHH
Confidence             5799999998 4888765

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=98.85  E-value=5e-09  Score=108.18  Aligned_cols=88  Identities=28%  Similarity=0.504  Sum_probs=70.6

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHH-HHhcCCCCCccccceEEEeCCeeeE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQ-ALTEIRHRNIVKFYGFCSHAQHSFL  701 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~-~l~~l~H~niv~l~g~~~~~~~~~l  701 (716)
                      ++|...+.||+|+||.||+|.. .+++.||||++....  .. ....++.+|+. +++.++|||||++++++..++..++
T Consensus        22 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~--~~-~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~l   98 (327)
T 3aln_A           22 EDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTV--DE-KEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWI   98 (327)
T ss_dssp             CSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCC--CH-HHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEE
T ss_pred             HHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeeccc--Cc-hHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEE
Confidence            5688889999999999999975 468899999997532  11 13455667766 7788899999999999999999999


Q ss_pred             EEcccCCCCHHhHh
Q 041300          702 VYEFLERGSLAAIL  715 (716)
Q Consensus       702 v~Ey~~~GsL~~~l  715 (716)
                      ||||+++ +|.+++
T Consensus        99 v~e~~~~-~l~~~~  111 (327)
T 3aln_A           99 CMELMST-SFDKFY  111 (327)
T ss_dssp             EECCCSE-EHHHHH
T ss_pred             EEeecCC-ChHHHH
Confidence            9999996 776654

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=98.85  E-value=1.8e-09  Score=113.26  Aligned_cols=90  Identities=26%  Similarity=0.406  Sum_probs=67.8

Q ss_pred             hcCCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC-----
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA-----  696 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~-----  696 (716)
                      ...|...+.||+|+||.||+|. ..+|+.||||++....  ......+.+.+|++++++++|||||++++++...     
T Consensus        28 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~--~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~  105 (367)
T 2fst_X           28 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF--QSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEE  105 (367)
T ss_dssp             ETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTT--SSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGG
T ss_pred             CCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccc--cCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCcccc
Confidence            3578899999999999999996 4568899999996532  1222456789999999999999999999999754     


Q ss_pred             -CeeeEEEcccCCCCHHhHh
Q 041300          697 -QHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       697 -~~~~lv~Ey~~~GsL~~~l  715 (716)
                       ...|+|+||+ +|+|.+++
T Consensus       106 ~~~~~lv~e~~-~~~L~~~~  124 (367)
T 2fst_X          106 FNDVYLVTHLM-GADLNNIV  124 (367)
T ss_dssp             CCCCEEEEECC-CEECC---
T ss_pred             CCeEEEEeccc-CCCHHHHH
Confidence             4579999999 67887765

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=98.84  E-value=2.9e-09  Score=111.32  Aligned_cols=89  Identities=27%  Similarity=0.394  Sum_probs=73.0

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCe----
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQH----  698 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~----  698 (716)
                      ..|...+.||+|+||.||+|.. .+|+.||||++.....  .....+.+.+|+.++++++|||||++++++...+.    
T Consensus        24 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~  101 (353)
T 3coi_A           24 KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQ--SEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNF  101 (353)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTS--SHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGC
T ss_pred             ceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEeccccc--chHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccc
Confidence            5688889999999999999964 4688999999975321  22235678999999999999999999999987654    


Q ss_pred             --eeEEEcccCCCCHHhHh
Q 041300          699 --SFLVYEFLERGSLAAIL  715 (716)
Q Consensus       699 --~~lv~Ey~~~GsL~~~l  715 (716)
                        .++||||++ |+|.+++
T Consensus       102 ~~~~lv~e~~~-~~l~~~~  119 (353)
T 3coi_A          102 YDFYLVMPFMQ-TDLQKIM  119 (353)
T ss_dssp             CCCEEEEECCS-EEGGGTT
T ss_pred             eeEEEEecccc-CCHHHHh
Confidence              499999998 5887764

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=98.84  E-value=2.9e-09  Score=117.27  Aligned_cols=89  Identities=15%  Similarity=0.127  Sum_probs=64.6

Q ss_pred             cccccccCCCceEEEEEEcCCCCEEEEEEccccCCccch----hhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          627 DAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQI----ADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       627 ~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~----~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ...++||+|+||.||+|.+ .+..+|+|+..........    ...+.|.+|++++++++|||||++..++...+..|+|
T Consensus       339 ~~~~~LG~G~fg~Vy~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lV  417 (540)
T 3en9_A          339 IPEHLIGKGAEADIKRDSY-LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIM  417 (540)
T ss_dssp             ---------CCEEEEEEEC-SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEE
T ss_pred             CCCCEEeeCCCEEEEEEEE-CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEE
Confidence            4467899999999999965 5678999987543222111    1234589999999999999999888888888889999


Q ss_pred             EcccCCCCHHhHhC
Q 041300          703 YEFLERGSLAAILS  716 (716)
Q Consensus       703 ~Ey~~~GsL~~~l~  716 (716)
                      ||||++|+|.++++
T Consensus       418 mE~~~ggsL~~~l~  431 (540)
T 3en9_A          418 MSYINGKLAKDVIE  431 (540)
T ss_dssp             EECCCSEEHHHHST
T ss_pred             EECCCCCCHHHHHH
Confidence            99999999999874

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=98.84  E-value=3.6e-09  Score=112.82  Aligned_cols=83  Identities=22%  Similarity=0.391  Sum_probs=62.5

Q ss_pred             Ccc-cccccCCCceEEEEEEcC---CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEe--CCee
Q 041300          626 FDA-EYCIGNGGHGSVYRAELP---SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSH--AQHS  699 (716)
Q Consensus       626 ~~~-~~~ig~g~~g~v~~~~~~---~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~--~~~~  699 (716)
                      |.. .++||+|+||.||+|+..   ++..||||++....      ....+.+|++++++++|||||++++++..  ....
T Consensus        22 y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~------~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~   95 (405)
T 3rgf_A           22 FEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTG------ISMSACREIALLRELKHPNVISLQKVFLSHADRKV   95 (405)
T ss_dssp             EECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSS------CCHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEE
T ss_pred             hhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCC------CCHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeE
Confidence            443 457999999999999864   47789999997532      12468899999999999999999999965  5678


Q ss_pred             eEEEcccCCCCHHhHh
Q 041300          700 FLVYEFLERGSLAAIL  715 (716)
Q Consensus       700 ~lv~Ey~~~GsL~~~l  715 (716)
                      ++||||+++ +|.+++
T Consensus        96 ~lv~e~~~~-~l~~~~  110 (405)
T 3rgf_A           96 WLLFDYAEH-DLWHII  110 (405)
T ss_dssp             EEEEECCSE-EHHHHH
T ss_pred             EEEEeCCCC-CHHHHH
Confidence            999999985 776654

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=98.83  E-value=6.2e-09  Score=105.82  Aligned_cols=85  Identities=24%  Similarity=0.350  Sum_probs=73.9

Q ss_pred             cCCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeCCeeeE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHSFL  701 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~~~~~l  701 (716)
                      .+|...+.||+|+||.||+|. ..+++.||||++....      ..+.+.+|++++.++ +|++++++++++..+...++
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~------~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~l   83 (298)
T 1csn_A           10 VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS------DAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVL   83 (298)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT------TSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEE
T ss_pred             cceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCC------ccHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEE
Confidence            468889999999999999997 4578999999986532      123588899999999 89999999999999999999


Q ss_pred             EEcccCCCCHHhHh
Q 041300          702 VYEFLERGSLAAIL  715 (716)
Q Consensus       702 v~Ey~~~GsL~~~l  715 (716)
                      ||||+ +|+|.+++
T Consensus        84 v~e~~-~~~L~~~l   96 (298)
T 1csn_A           84 VIDLL-GPSLEDLL   96 (298)
T ss_dssp             EEECC-CCBHHHHH
T ss_pred             EEEec-CCCHHHHH
Confidence            99999 99999886

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.82  E-value=2.1e-10  Score=112.76  Aligned_cols=21  Identities=14%  Similarity=-0.108  Sum_probs=14.2

Q ss_pred             CCcceeeeeeCCCC-CEEEEEc
Q 041300           38 SPCAWYGISCNDAG-RVTNISL   58 (716)
Q Consensus        38 ~~c~w~gv~c~~~~-~v~~l~l   58 (716)
                      +.|.|.|+.|+..| +|+.+..
T Consensus        76 ~l~~~~g~i~~~~~~ki~~~v~   97 (267)
T 3rw6_A           76 ALKAVNYKILDRENRRISIIIN   97 (267)
T ss_dssp             HHHHTTSSCBCTTSCBCCCEEE
T ss_pred             HHHhcCcEEECCCCCEEEEEEe
Confidence            45789999998654 5544443

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=98.81  E-value=2.3e-09  Score=110.67  Aligned_cols=91  Identities=24%  Similarity=0.462  Sum_probs=70.7

Q ss_pred             hhcCCcccccccCCCceEEEEEEc--CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC---CCCCccccceEEE--
Q 041300          622 ETNDFDAEYCIGNGGHGSVYRAEL--PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI---RHRNIVKFYGFCS--  694 (716)
Q Consensus       622 ~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l---~H~niv~l~g~~~--  694 (716)
                      ...+|...+.||+|+||.||+|..  .+++.||||++........  ....+.+|+++++.+   +||||+++++++.  
T Consensus         9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~--~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~   86 (326)
T 1blx_A            9 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEG--MPLSTIREVAVLRHLETFEHPNVVRLFDVCTVS   86 (326)
T ss_dssp             GGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTS--CBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEE
T ss_pred             chhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCccccc--CCchhhHHHHHHHhhhccCCCCeEeeeeeeeec
Confidence            346799999999999999999975  4678999999875322111  123466777776665   8999999999997  


Q ss_pred             ---eCCeeeEEEcccCCCCHHhHh
Q 041300          695 ---HAQHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       695 ---~~~~~~lv~Ey~~~GsL~~~l  715 (716)
                         .....++||||++ |+|.+++
T Consensus        87 ~~~~~~~~~lv~e~~~-~~L~~~l  109 (326)
T 1blx_A           87 RTDRETKLTLVFEHVD-QDLTTYL  109 (326)
T ss_dssp             ECSSEEEEEEEEECCS-CBHHHHH
T ss_pred             ccCCCceEEEEEecCC-CCHHHHH
Confidence               4557899999998 6998875

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=98.81  E-value=1.7e-09  Score=116.01  Aligned_cols=85  Identities=21%  Similarity=0.310  Sum_probs=70.3

Q ss_pred             hcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeCCeeeE
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHSFL  701 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~~~~~l  701 (716)
                      ...|...++||+|+||+||.....+++.||||++.....       ..+.+|+++++++ +|||||++++++.+.+..|+
T Consensus        23 ~~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~-------~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~l   95 (432)
T 3p23_A           23 KISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECF-------SFADREVQLLRESDEHPNVIRYFCTEKDRQFQYI   95 (432)
T ss_dssp             TEEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTTE-------EECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEE
T ss_pred             cEEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHHH-------HHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEE
Confidence            346888899999999996655445789999999865211       2356899999999 89999999999999999999


Q ss_pred             EEcccCCCCHHhHh
Q 041300          702 VYEFLERGSLAAIL  715 (716)
Q Consensus       702 v~Ey~~~GsL~~~l  715 (716)
                      |||||+ |+|.+++
T Consensus        96 v~E~~~-g~L~~~l  108 (432)
T 3p23_A           96 AIELCA-ATLQEYV  108 (432)
T ss_dssp             EEECCS-EEHHHHH
T ss_pred             EEECCC-CCHHHHH
Confidence            999997 5998876

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=98.80  E-value=5.7e-09  Score=108.16  Aligned_cols=84  Identities=21%  Similarity=0.295  Sum_probs=65.1

Q ss_pred             hcCCcc-cccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHH-HHHhcCCCCCccccceEEEe----
Q 041300          623 TNDFDA-EYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEV-QALTEIRHRNIVKFYGFCSH----  695 (716)
Q Consensus       623 ~~~~~~-~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei-~~l~~l~H~niv~l~g~~~~----  695 (716)
                      .++|.. .++||+|+||+||+|... +++.||||++...         ....+|+ ..+..++||||+++++++..    
T Consensus        27 ~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~---------~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~   97 (336)
T 3fhr_A           27 TDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDS---------PKARQEVDHHWQASGGPHIVCILDVYENMHHG   97 (336)
T ss_dssp             GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESS---------HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETT
T ss_pred             cceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCc---------HHHHHHHHHHHHhcCCCChHHHHHHHhhccCC
Confidence            346777 457999999999999754 6899999998642         1122232 34667799999999999976    


Q ss_pred             CCeeeEEEcccCCCCHHhHh
Q 041300          696 AQHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       696 ~~~~~lv~Ey~~~GsL~~~l  715 (716)
                      ....++|||||++|+|.+++
T Consensus        98 ~~~~~lv~e~~~gg~L~~~l  117 (336)
T 3fhr_A           98 KRCLLIIMECMEGGELFSRI  117 (336)
T ss_dssp             EEEEEEEEECCTTEEHHHHH
T ss_pred             CceEEEEEeccCCCCHHHHH
Confidence            44579999999999999886

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=98.79  E-value=4.6e-09  Score=108.86  Aligned_cols=87  Identities=26%  Similarity=0.402  Sum_probs=71.4

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCC-CCCccccceEEEe------
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR-HRNIVKFYGFCSH------  695 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~-H~niv~l~g~~~~------  695 (716)
                      ..|...++||+|+||.||+|.. .+++.||||++...    .....+.+.+|+.++.++. |||||++++++..      
T Consensus        28 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~----~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~  103 (337)
T 3ll6_A           28 LRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSN----EEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESD  103 (337)
T ss_dssp             EEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEES----SHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTST
T ss_pred             ceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCC----chHHHHHHHHHHHHHHHhccCCChhhccccccccccccc
Confidence            4688899999999999999975 46899999998542    1224567899999999996 9999999999953      


Q ss_pred             --CCeeeEEEcccCCCCHHhHh
Q 041300          696 --AQHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       696 --~~~~~lv~Ey~~~GsL~~~l  715 (716)
                        ....++||||+. |+|.+++
T Consensus       104 ~~~~~~~lv~e~~~-g~L~~~l  124 (337)
T 3ll6_A          104 TGQAEFLLLTELCK-GQLVEFL  124 (337)
T ss_dssp             TSSEEEEEEEECCS-EEHHHHH
T ss_pred             cCCceEEEEEEecC-CCHHHHH
Confidence              334799999996 7888875

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=98.79  E-value=4.9e-09  Score=107.22  Aligned_cols=92  Identities=27%  Similarity=0.407  Sum_probs=69.7

Q ss_pred             hcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccc-hhhHHHHHHHHHHHhcCC---CCCccccceEEEeCC
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQ-IADQKEFLTEVQALTEIR---HRNIVKFYGFCSHAQ  697 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~-~~~~~~~~~ei~~l~~l~---H~niv~l~g~~~~~~  697 (716)
                      .+.|...+.||+|+||+||+|.. .+++.||||++........ ......+.+|++++++++   |||||++++++....
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~~   87 (308)
T 3g33_A            8 TSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATSR   87 (308)
T ss_dssp             --CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEECC
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeeccC
Confidence            46799999999999999999974 4689999999864321111 011245677887777664   999999999998755


Q ss_pred             -----eeeEEEcccCCCCHHhHh
Q 041300          698 -----HSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       698 -----~~~lv~Ey~~~GsL~~~l  715 (716)
                           ..++||||++ |+|.+++
T Consensus        88 ~~~~~~~~lv~e~~~-~~L~~~~  109 (308)
T 3g33_A           88 TDREIKVTLVFEHVD-QDLRTYL  109 (308)
T ss_dssp             SSSEEEEEEEEECCC-CBHHHHH
T ss_pred             CCCceeEEEEehhhh-cCHHHHH
Confidence                 4799999998 5998875

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=98.79  E-value=1.9e-09  Score=112.66  Aligned_cols=82  Identities=21%  Similarity=0.242  Sum_probs=69.0

Q ss_pred             cCCcccccccCCCceEEEEEEcCC---------CCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccc------
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELPS---------GEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVK------  688 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~~---------~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~------  688 (716)
                      ++|...+.||+|+||.||+|....         ++.||||++...         +.+.+|++++.+++|||||+      
T Consensus        42 ~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~---------~~~~~E~~~l~~l~h~niv~~~~~~~  112 (352)
T 2jii_A           42 RQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD---------GRLFNEQNFFQRAAKPLQVNKWKKLY  112 (352)
T ss_dssp             CEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT---------STHHHHHHHHHHHCCHHHHHHHHHHT
T ss_pred             CeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc---------chHHHHHHHHHHhcccchhhhhhhhc
Confidence            578899999999999999997653         788999998652         34789999999999999998      


Q ss_pred             ---------cceEEEe-CCeeeEEEcccCCCCHHhHh
Q 041300          689 ---------FYGFCSH-AQHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       689 ---------l~g~~~~-~~~~~lv~Ey~~~GsL~~~l  715 (716)
                               +++++.. .+..++||||| +|+|.+++
T Consensus       113 ~~~~~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l  148 (352)
T 2jii_A          113 STPLLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSAL  148 (352)
T ss_dssp             TCTTCSCCCCCEEEEETTTEEEEEEECC-CEEHHHHH
T ss_pred             cCCccCccchhhccccCCcEEEEEecCC-CcCHHHHH
Confidence                     6778876 67889999999 99999986

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=98.78  E-value=1.7e-09  Score=110.89  Aligned_cols=95  Identities=19%  Similarity=0.251  Sum_probs=68.4

Q ss_pred             HhhcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccch--hhHHHHHHHHHHHhcC----CCCCccccceEE
Q 041300          621 RETNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQI--ADQKEFLTEVQALTEI----RHRNIVKFYGFC  693 (716)
Q Consensus       621 ~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~--~~~~~~~~ei~~l~~l----~H~niv~l~g~~  693 (716)
                      ...++|...+.||+|+||.||+|.. .+++.||||++.........  .....+.+|+.++.++    +||||+++++++
T Consensus        28 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~~  107 (312)
T 2iwi_A           28 AFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDWF  107 (312)
T ss_dssp             -----CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEEC
T ss_pred             hhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEEE
Confidence            3356799999999999999999975 46889999999754322111  1223466899998888    899999999999


Q ss_pred             EeCCeeeEEEcc-cCCCCHHhHh
Q 041300          694 SHAQHSFLVYEF-LERGSLAAIL  715 (716)
Q Consensus       694 ~~~~~~~lv~Ey-~~~GsL~~~l  715 (716)
                      ...+..++|||| +++|+|.+++
T Consensus       108 ~~~~~~~~v~e~~~~~~~L~~~l  130 (312)
T 2iwi_A          108 ETQEGFMLVLERPLPAQDLFDYI  130 (312)
T ss_dssp             -----CEEEEECCSSEEEHHHHH
T ss_pred             ecCCeEEEEEEecCCCCCHHHHH
Confidence            998999999999 8999999876

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=98.78  E-value=2.8e-09  Score=111.03  Aligned_cols=91  Identities=23%  Similarity=0.169  Sum_probs=66.8

Q ss_pred             cCCcccccccCCCceEEEEEEcC----CCCEEEEEEccccCCccch-------hhHHHHHHHHHHHhcCCCCCccccceE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP----SGEVVAVKKFHSSIPCDQI-------ADQKEFLTEVQALTEIRHRNIVKFYGF  692 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~----~~~~vavK~l~~~~~~~~~-------~~~~~~~~ei~~l~~l~H~niv~l~g~  692 (716)
                      .+|...+.||+|+||.||+|...    .+..||||++.........       .....+.+|+..+..++||||++++++
T Consensus        37 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~~  116 (345)
T 2v62_A           37 NQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGS  116 (345)
T ss_dssp             CEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEEE
T ss_pred             ceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeecc
Confidence            56889999999999999999764    5678999998753211000       012347788899999999999999999


Q ss_pred             EEe----CCeeeEEEcccCCCCHHhHh
Q 041300          693 CSH----AQHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       693 ~~~----~~~~~lv~Ey~~~GsL~~~l  715 (716)
                      +..    ....|+||||| +|+|.+++
T Consensus       117 ~~~~~~~~~~~~lv~e~~-~~~L~~~l  142 (345)
T 2v62_A          117 GLTEFKGRSYRFMVMERL-GIDLQKIS  142 (345)
T ss_dssp             EEEESSSCEEEEEEEECE-EEEHHHHC
T ss_pred             cccccCCCcEEEEEEecc-CCCHHHHH
Confidence            988    67789999999 99999886

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=98.76  E-value=8.6e-09  Score=108.47  Aligned_cols=90  Identities=10%  Similarity=0.035  Sum_probs=60.3

Q ss_pred             hcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHH---HHHhcCCCCCccccc-------e
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEV---QALTEIRHRNIVKFY-------G  691 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei---~~l~~l~H~niv~l~-------g  691 (716)
                      ...|...+.||+|+||.||+|.. .+++.||||++....... ....+.+.+|+   ..+++ +|||+|+++       +
T Consensus        61 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~-~~~~~~~~~E~~~~~~l~~-~hp~iv~~~~~~~~p~d  138 (371)
T 3q60_A           61 ERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENS-RSELERLHEATFAAARLLG-ESPEEARDRRRLLLPSD  138 (371)
T ss_dssp             EEEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTH-HHHHHHHHHHHHHHHHHHC-----------CBCCCCE
T ss_pred             ceeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEeccccc-ccHHHHHHHHHHHHHHhcc-cChhhhhhceeEEeeeh
Confidence            34588899999999999999975 468899999998743222 22445677884   55566 799977644       5


Q ss_pred             EEEeC-----------------CeeeEEEcccCCCCHHhHh
Q 041300          692 FCSHA-----------------QHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       692 ~~~~~-----------------~~~~lv~Ey~~~GsL~~~l  715 (716)
                      ++..+                 ...|+|||||+ |+|.+++
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l  178 (371)
T 3q60_A          139 AVAVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLF  178 (371)
T ss_dssp             EEEETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHH
T ss_pred             heecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHH
Confidence            55443                 23799999999 8999986

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=98.74  E-value=1.3e-08  Score=106.64  Aligned_cols=87  Identities=24%  Similarity=0.309  Sum_probs=60.0

Q ss_pred             HHHHhhcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC
Q 041300          618 EIVRETNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA  696 (716)
Q Consensus       618 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~  696 (716)
                      ......++|...+.||+|+||.||+|.. .++..||||++.....     ....+.+|++.+..++|||||++++++...
T Consensus        17 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-----~~~~~~~~~~~l~~l~h~niv~~~~~~~~~   91 (360)
T 3e3p_A           17 RSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPR-----FRNRELQIMQDLAVLHHPNIVQLQSYFYTL   91 (360)
T ss_dssp             HHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCTT-----CCCHHHHHHHHHHHHCCTTBCCEEEEEEEE
T ss_pred             hchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCcc-----ccHHHHHHHHHHHhcCCCCcccHHHhhhcc
Confidence            3445667899999999999999999975 4689999999865321     123467788888999999999999999764


Q ss_pred             Ce-------eeEEEcccCCC
Q 041300          697 QH-------SFLVYEFLERG  709 (716)
Q Consensus       697 ~~-------~~lv~Ey~~~G  709 (716)
                      +.       .++||||++++
T Consensus        92 ~~~~~~~~~~~lv~e~~~~~  111 (360)
T 3e3p_A           92 GERDRRDIYLNVVMEYVPDT  111 (360)
T ss_dssp             CSSCTTCEEEEEEEECCSCB
T ss_pred             ccccccceeEEEEeeccccc
Confidence            43       78999999975

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=98.73  E-value=4.5e-09  Score=112.50  Aligned_cols=82  Identities=30%  Similarity=0.449  Sum_probs=65.1

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC----C-
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA----Q-  697 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~----~-  697 (716)
                      ..|...++||+|+||.||+|... +++.||||++....        ..+.+|++++++++|||||++++++...    + 
T Consensus        54 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~--------~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~  125 (420)
T 1j1b_A           54 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK--------RFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDE  125 (420)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCT--------TSCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTE
T ss_pred             ceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccc--------hhHHHHHHHHHHcCCCCccceeeEEeccCCCCcc
Confidence            35888899999999999999764 58999999986531        1234799999999999999999998652    1 


Q ss_pred             -eeeEEEcccCCCCHHhH
Q 041300          698 -HSFLVYEFLERGSLAAI  714 (716)
Q Consensus       698 -~~~lv~Ey~~~GsL~~~  714 (716)
                       ..++|||||++ ++.+.
T Consensus       126 ~~~~lv~e~~~~-~l~~~  142 (420)
T 1j1b_A          126 VYLNLVLDYVPE-TVYRV  142 (420)
T ss_dssp             EEEEEEEECCCE-EHHHH
T ss_pred             eeEEeehhcccc-cHHHH
Confidence             35799999986 45443

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=98.71  E-value=1.8e-08  Score=103.50  Aligned_cols=87  Identities=21%  Similarity=0.331  Sum_probs=61.8

Q ss_pred             hcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL  701 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l  701 (716)
                      ..+|...+.||+|+||.||+|... +++.||||++.....  .....+.+..+..+++.++||||+++++++..++..++
T Consensus        24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~l  101 (318)
T 2dyl_A           24 INDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGN--KEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFI  101 (318)
T ss_dssp             GGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSC--HHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred             hccccccceeeecCCeeEEEEEEecCCeEEEEEEeccccc--chHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEE
Confidence            356888899999999999999764 689999999976321  11122334455567888899999999999999999999


Q ss_pred             EEcccCCCCHH
Q 041300          702 VYEFLERGSLA  712 (716)
Q Consensus       702 v~Ey~~~GsL~  712 (716)
                      ||||+ ++.+.
T Consensus       102 v~e~~-~~~~~  111 (318)
T 2dyl_A          102 AMELM-GTCAE  111 (318)
T ss_dssp             EECCC-SEEHH
T ss_pred             EEecc-CCcHH
Confidence            99999 44443

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=98.71  E-value=2.4e-08  Score=107.12  Aligned_cols=86  Identities=19%  Similarity=0.302  Sum_probs=71.4

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC------CCCCccccceEEEeC
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI------RHRNIVKFYGFCSHA  696 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l------~H~niv~l~g~~~~~  696 (716)
                      ..|...++||+|+||.||+|.. .+++.||||++...     ....+++.+|++++..+      +|+||+++++++...
T Consensus        97 ~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~-----~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~  171 (429)
T 3kvw_A           97 YRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNE-----KRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFR  171 (429)
T ss_dssp             TTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSC-----HHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEET
T ss_pred             CcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCc-----cchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccC
Confidence            4688899999999999999964 45889999999752     11345678888887776      677999999999999


Q ss_pred             CeeeEEEcccCCCCHHhHh
Q 041300          697 QHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       697 ~~~~lv~Ey~~~GsL~~~l  715 (716)
                      +..++|||||. |+|.+++
T Consensus       172 ~~~~lv~e~~~-~~L~~~l  189 (429)
T 3kvw_A          172 NHICMTFELLS-MNLYELI  189 (429)
T ss_dssp             TEEEEEECCCC-CBHHHHH
T ss_pred             CeEEEEEeccC-CCHHHHH
Confidence            99999999997 6888775

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=98.70  E-value=4.9e-09  Score=111.16  Aligned_cols=80  Identities=26%  Similarity=0.353  Sum_probs=65.0

Q ss_pred             cCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCe-----
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQH-----  698 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~-----  698 (716)
                      ..|...++||+|+||.||+|+...+..||+|++.....        ...+|+++++.++|||||++++++...+.     
T Consensus        40 ~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~--------~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~  111 (394)
T 4e7w_A           40 IAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKR--------FKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEV  111 (394)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCTT--------SCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCE
T ss_pred             ceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCcc--------hHHHHHHHHHhCCCCCcceEEEEEEecCCCCCce
Confidence            46888999999999999999877666799998864221        12369999999999999999999966443     


Q ss_pred             -eeEEEcccCCCCH
Q 041300          699 -SFLVYEFLERGSL  711 (716)
Q Consensus       699 -~~lv~Ey~~~GsL  711 (716)
                       .++|||||+++.+
T Consensus       112 ~~~lv~e~~~~~l~  125 (394)
T 4e7w_A          112 FLNLVLEYVPETVY  125 (394)
T ss_dssp             EEEEEEECCSEEHH
T ss_pred             EEEEEeeccCccHH
Confidence             7899999998643

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=98.69  E-value=1.3e-08  Score=105.38  Aligned_cols=86  Identities=22%  Similarity=0.324  Sum_probs=72.6

Q ss_pred             cCCcccccccCCCceEEEEEEc--CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCC------ccccceEEEe
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL--PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRN------IVKFYGFCSH  695 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~n------iv~l~g~~~~  695 (716)
                      ..|...+.||+|+||.||+|..  .+++.||||++...    . ...+.+.+|++++..++|++      ++++++++..
T Consensus        14 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~----~-~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~   88 (339)
T 1z57_A           14 ARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNV----D-RYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEH   88 (339)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSS----H-HHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEE
T ss_pred             CceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecC----C-chhHHHHHHHHHHHHhhhcCCCCceeeEeeeccccc
Confidence            4788999999999999999964  36789999998642    1 13467889999998887665      9999999999


Q ss_pred             CCeeeEEEcccCCCCHHhHh
Q 041300          696 AQHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       696 ~~~~~lv~Ey~~~GsL~~~l  715 (716)
                      .+..++||||+ +|+|.+++
T Consensus        89 ~~~~~lv~e~~-~~~l~~~l  107 (339)
T 1z57_A           89 HGHICIVFELL-GLSTYDFI  107 (339)
T ss_dssp             TTEEEEEEECC-CCBHHHHH
T ss_pred             CCcEEEEEcCC-CCCHHHHH
Confidence            99999999999 88998876

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=98.69  E-value=9.2e-09  Score=107.91  Aligned_cols=92  Identities=21%  Similarity=0.285  Sum_probs=68.5

Q ss_pred             hcCCcccccccCCCceEEEEEEcCC------CCEEEEEEccccCCccch-------hhHHHHHHHHHHHhcCCCCCcccc
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELPS------GEVVAVKKFHSSIPCDQI-------ADQKEFLTEVQALTEIRHRNIVKF  689 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~~------~~~vavK~l~~~~~~~~~-------~~~~~~~~ei~~l~~l~H~niv~l  689 (716)
                      ..+|...+.||+|+||.||+|....      ++.||||++.........       .....+..|+..+..++|||||++
T Consensus        34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~  113 (364)
T 3op5_A           34 AAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKY  113 (364)
T ss_dssp             CCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCCE
T ss_pred             CCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCeE
Confidence            4579999999999999999997654      468999998753210000       001124556667888899999999


Q ss_pred             ceEEEeC----CeeeEEEcccCCCCHHhHh
Q 041300          690 YGFCSHA----QHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       690 ~g~~~~~----~~~~lv~Ey~~~GsL~~~l  715 (716)
                      ++++...    ...|+||||| +|+|.+++
T Consensus       114 ~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~  142 (364)
T 3op5_A          114 WGSGLHDKNGKSYRFMIMDRF-GSDLQKIY  142 (364)
T ss_dssp             EEEEEEEETTEEEEEEEEECE-EEEHHHHH
T ss_pred             EeeeeeccCCcceEEEEEeCC-CCCHHHHH
Confidence            9999775    4479999999 99999876

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=98.69  E-value=2.4e-08  Score=100.35  Aligned_cols=93  Identities=13%  Similarity=0.105  Sum_probs=69.4

Q ss_pred             HHHHHhhcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccc-----h---------hhHHHHHHHHHHHhcCC
Q 041300          617 DEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQ-----I---------ADQKEFLTEVQALTEIR  682 (716)
Q Consensus       617 ~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~-----~---------~~~~~~~~ei~~l~~l~  682 (716)
                      ..+......|...+.||+|+||.||+|...+|+.||||.++.......     .         .....+.+|++++++++
T Consensus        83 ~~~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~  162 (282)
T 1zar_A           83 HRLVRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ  162 (282)
T ss_dssp             HHHHHTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHhCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc
Confidence            344444556777899999999999999877789999999964321100     0         13456899999999999


Q ss_pred             CCCccccceEEEeCCeeeEEEcccCCCCHHh
Q 041300          683 HRNIVKFYGFCSHAQHSFLVYEFLERGSLAA  713 (716)
Q Consensus       683 H~niv~l~g~~~~~~~~~lv~Ey~~~GsL~~  713 (716)
                        | +++.+++. .+..++|||||++|+|.+
T Consensus       163 --~-~~v~~~~~-~~~~~lvmE~~~g~~L~~  189 (282)
T 1zar_A          163 --G-LAVPKVYA-WEGNAVLMELIDAKELYR  189 (282)
T ss_dssp             --T-SSSCCEEE-EETTEEEEECCCCEEGGG
T ss_pred             --C-CCcCeEEe-ccceEEEEEecCCCcHHH
Confidence              5 77777654 356799999999999987

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=98.68  E-value=1.5e-08  Score=107.57  Aligned_cols=86  Identities=20%  Similarity=0.304  Sum_probs=69.7

Q ss_pred             cCCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCC--------CCCccccceEEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR--------HRNIVKFYGFCS  694 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~--------H~niv~l~g~~~  694 (716)
                      ..|...++||+|+||+||+|. ..+++.||||++...    . ...+.+.+|++++.+++        |+|||++++++.
T Consensus        37 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~----~-~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~  111 (397)
T 1wak_A           37 GRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSA----E-HYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFK  111 (397)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC----H-HHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEE
T ss_pred             CeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecC----C-cchHHHHHHHHHHHHHhhcCCCCCCcceeeeeeccee
Confidence            568899999999999999996 456889999998742    1 13467899999999886        788999999997


Q ss_pred             ----eCCeeeEEEcccCCCCHHhHh
Q 041300          695 ----HAQHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       695 ----~~~~~~lv~Ey~~~GsL~~~l  715 (716)
                          .....++||||+ +|++.+++
T Consensus       112 ~~~~~~~~~~lv~e~~-~~~l~~~~  135 (397)
T 1wak_A          112 ISGVNGTHICMVFEVL-GHHLLKWI  135 (397)
T ss_dssp             EEETTEEEEEEEECCC-CCBHHHHH
T ss_pred             ecCCCCceEEEEEecc-CccHHHHH
Confidence                445789999999 55666553

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=98.68  E-value=1.8e-08  Score=102.26  Aligned_cols=86  Identities=21%  Similarity=0.319  Sum_probs=71.4

Q ss_pred             hcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEE-EeCCeee
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFC-SHAQHSF  700 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~-~~~~~~~  700 (716)
                      .++|...+.||+|+||.||+|+. .+++.||||++....      ...++.+|++++.+++|++++..++++ ...+..+
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~------~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~   81 (296)
T 3uzp_A            8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT------KHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNV   81 (296)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCS------SCCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEE
T ss_pred             ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCc------chhHHHHHHHHHHHhhcCCCCCccccccCCCCceE
Confidence            45788999999999999999974 578999999986532      123588999999999999988777777 4566789


Q ss_pred             EEEcccCCCCHHhHh
Q 041300          701 LVYEFLERGSLAAIL  715 (716)
Q Consensus       701 lv~Ey~~~GsL~~~l  715 (716)
                      +||||+ +|+|.+++
T Consensus        82 lv~e~~-~~~L~~~~   95 (296)
T 3uzp_A           82 MVMELL-GPSLEDLF   95 (296)
T ss_dssp             EEEECC-CCBHHHHH
T ss_pred             EEEEec-CCCHHHHH
Confidence            999999 99999876

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=98.67  E-value=8.4e-09  Score=106.13  Aligned_cols=94  Identities=19%  Similarity=0.295  Sum_probs=75.6

Q ss_pred             hhcCCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccch--hhHHHHHHHHHHHhcCC--CCCccccceEEEeC
Q 041300          622 ETNDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQI--ADQKEFLTEVQALTEIR--HRNIVKFYGFCSHA  696 (716)
Q Consensus       622 ~~~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~--~~~~~~~~ei~~l~~l~--H~niv~l~g~~~~~  696 (716)
                      ...+|...+.||+|+||.||+|. ..+++.||||++.........  ...+.+.+|++++.+++  |+|++++++++..+
T Consensus        41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~~  120 (320)
T 3a99_A           41 LESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERP  120 (320)
T ss_dssp             CTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECS
T ss_pred             ccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEecC
Confidence            34578899999999999999996 456889999999754322110  01234778999999996  59999999999999


Q ss_pred             CeeeEEEcccCC-CCHHhHh
Q 041300          697 QHSFLVYEFLER-GSLAAIL  715 (716)
Q Consensus       697 ~~~~lv~Ey~~~-GsL~~~l  715 (716)
                      +..++||||+.+ |+|.+++
T Consensus       121 ~~~~lv~e~~~~~~~L~~~l  140 (320)
T 3a99_A          121 DSFVLILERPEPVQDLFDFI  140 (320)
T ss_dssp             SEEEEEEECCSSEEEHHHHH
T ss_pred             CcEEEEEEcCCCCccHHHHH
Confidence            999999999986 8998875

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=98.64  E-value=4e-08  Score=99.63  Aligned_cols=86  Identities=21%  Similarity=0.319  Sum_probs=68.7

Q ss_pred             hcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEE-EeCCeee
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFC-SHAQHSF  700 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~-~~~~~~~  700 (716)
                      .+.|...+.||+|+||.||+|.. .+++.||||++....      ...++.+|++++..++|++++..++++ ..++..+
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~------~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~   81 (296)
T 4hgt_A            8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT------KHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNV   81 (296)
T ss_dssp             ---CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC---------CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEE
T ss_pred             CCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeecccc------cchHHHHHHHHHHHhcCCCCCCeeeeecCCCCceE
Confidence            46799999999999999999974 578899999875432      123488899999999999988888777 5566789


Q ss_pred             EEEcccCCCCHHhHh
Q 041300          701 LVYEFLERGSLAAIL  715 (716)
Q Consensus       701 lv~Ey~~~GsL~~~l  715 (716)
                      +||||+ +|+|.+++
T Consensus        82 lv~e~~-~~~L~~~~   95 (296)
T 4hgt_A           82 MVMELL-GPSLEDLF   95 (296)
T ss_dssp             EEEECC-CCBHHHHH
T ss_pred             EEEEcc-CCCHHHHH
Confidence            999999 99999876

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=98.62  E-value=2.9e-08  Score=104.49  Aligned_cols=86  Identities=21%  Similarity=0.305  Sum_probs=72.0

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCC-----------CCCccccce
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR-----------HRNIVKFYG  691 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~-----------H~niv~l~g  691 (716)
                      .+|...+.||+|+||.||+|.. .+++.||||++...    . .....+.+|++++.+++           ||||+++++
T Consensus        19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~----~-~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~   93 (373)
T 1q8y_A           19 ARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD----K-VYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLD   93 (373)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC----H-HHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCE
T ss_pred             CeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCC----c-cchhhhhHHHHHHHHhhcccccchhccccchHHHHHH
Confidence            5688999999999999999974 56889999998742    1 23467889999998886           899999999


Q ss_pred             EEEeCC----eeeEEEcccCCCCHHhHh
Q 041300          692 FCSHAQ----HSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       692 ~~~~~~----~~~lv~Ey~~~GsL~~~l  715 (716)
                      ++...+    ..++||||+ +|+|.+++
T Consensus        94 ~~~~~~~~~~~~~lv~e~~-~~~L~~~~  120 (373)
T 1q8y_A           94 HFNHKGPNGVHVVMVFEVL-GENLLALI  120 (373)
T ss_dssp             EEEEEETTEEEEEEEECCC-CEEHHHHH
T ss_pred             HhhccCCCCceEEEEEecC-CCCHHHHH
Confidence            997654    689999999 88998875

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=98.61  E-value=8.1e-08  Score=104.08  Aligned_cols=85  Identities=24%  Similarity=0.312  Sum_probs=68.9

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCC-CccccceEEEeCCeeeE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHR-NIVKFYGFCSHAQHSFL  701 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~-niv~l~g~~~~~~~~~l  701 (716)
                      ++|...++||+|+||.||+|.. .+++.||||++.....      ..++.+|++++..++|+ +++.+..++...+..++
T Consensus         7 ~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~------~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~l   80 (483)
T 3sv0_A            7 NKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTK------HPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVL   80 (483)
T ss_dssp             TTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCS------SCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEE
T ss_pred             CcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccc------cHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEE
Confidence            5788999999999999999974 5689999998765321      13488999999999874 55555566677788899


Q ss_pred             EEcccCCCCHHhHh
Q 041300          702 VYEFLERGSLAAIL  715 (716)
Q Consensus       702 v~Ey~~~GsL~~~l  715 (716)
                      ||||+ +|+|.+++
T Consensus        81 vme~~-g~sL~~ll   93 (483)
T 3sv0_A           81 VMDLL-GPSLEDLF   93 (483)
T ss_dssp             EEECC-CCBHHHHH
T ss_pred             EEECC-CCCHHHHH
Confidence            99999 99999886

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=98.55  E-value=7.6e-08  Score=101.62  Aligned_cols=87  Identities=28%  Similarity=0.348  Sum_probs=71.7

Q ss_pred             hcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCC-CC-----CccccceEEEe
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR-HR-----NIVKFYGFCSH  695 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~-H~-----niv~l~g~~~~  695 (716)
                      ..+|...+.||+|+||+||+|.. .+++.||||++...    . ....++.+|+.++..++ |+     ++|++++++..
T Consensus        53 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~----~-~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~  127 (382)
T 2vx3_A           53 MDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNK----K-AFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMF  127 (382)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSS----H-HHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEE
T ss_pred             eeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEecc----H-HHHHHHHHHHHHHHHHHhcccccceeEEEeeeeecc
Confidence            46799999999999999999964 46789999999742    1 13466888988888875 55     49999999999


Q ss_pred             CCeeeEEEcccCCCCHHhHh
Q 041300          696 AQHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       696 ~~~~~lv~Ey~~~GsL~~~l  715 (716)
                      .+..++||||++ |+|.+++
T Consensus       128 ~~~~~lv~e~~~-~~L~~~l  146 (382)
T 2vx3_A          128 RNHLCLVFEMLS-YNLYDLL  146 (382)
T ss_dssp             TTEEEEEEECCC-CBHHHHH
T ss_pred             CCceEEEEecCC-CCHHHHH
Confidence            999999999996 5998876

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=98.49  E-value=8.9e-08  Score=106.05  Aligned_cols=85  Identities=22%  Similarity=0.171  Sum_probs=60.6

Q ss_pred             cccCCCceEEEEE-EcCCCCEEEEEEccccCCcc------chhhHHHHHHHHHHHhcC-CCCCccccceEEEeCCeeeEE
Q 041300          631 CIGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCD------QIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       631 ~ig~g~~g~v~~~-~~~~~~~vavK~l~~~~~~~------~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ..+.|+.|.++.+ ++--|+.+|||++.+.....      .....++|.+|+++|+++ .|+||+++++++.+++..|||
T Consensus       241 ~~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLV  320 (569)
T 4azs_A          241 QPYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLV  320 (569)
T ss_dssp             C-C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEE
T ss_pred             ccccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEE
Confidence            3456666666654 23357889999997543211      112346799999999999 799999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      ||||+||+|.++|
T Consensus       321 MEyv~G~~L~d~i  333 (569)
T 4azs_A          321 MEKLPGRLLSDML  333 (569)
T ss_dssp             EECCCSEEHHHHH
T ss_pred             EecCCCCcHHHHH
Confidence            9999999999987

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=98.49  E-value=1.1e-07  Score=99.09  Aligned_cols=86  Identities=19%  Similarity=0.288  Sum_probs=70.3

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CC-CEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCC------ccccceEEEe
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SG-EVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRN------IVKFYGFCSH  695 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~-~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~n------iv~l~g~~~~  695 (716)
                      ++|...+.||+|+||+||+|... ++ ..||||++...    . ...+.+.+|++++++++|++      ++.+++++..
T Consensus        19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~----~-~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~   93 (355)
T 2eu9_A           19 ERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNV----G-KYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNF   93 (355)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSC----H-HHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEE
T ss_pred             ccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEccc----c-cchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeee
Confidence            57889999999999999999643 34 68999998642    1 13467889999999987776      8999999999


Q ss_pred             CCeeeEEEcccCCCCHHhHh
Q 041300          696 AQHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       696 ~~~~~lv~Ey~~~GsL~~~l  715 (716)
                      .+..++||||+ +|++.+++
T Consensus        94 ~~~~~lv~e~~-~~~l~~~l  112 (355)
T 2eu9_A           94 HGHMCIAFELL-GKNTFEFL  112 (355)
T ss_dssp             TTEEEEEEECC-CCBHHHHH
T ss_pred             CCeEEEEEecc-CCChHHHH
Confidence            99999999999 56676654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.43  E-value=3e-08  Score=92.71  Aligned_cols=115  Identities=15%  Similarity=0.143  Sum_probs=81.8

Q ss_pred             CCCCCCCCcEEECCCC-Ccccc----CcccccCCCCCCEEECcCCcCccc----CCccccCCCCCCEEEcccccCccC--
Q 041300           71 SFSSFPQLVHLDLSLN-GFFGT----IPSQIGNLTKLSYISLDSNQLSGK----IPAEVGLLTHLKVLSFQFNELDGS--  139 (716)
Q Consensus        71 ~f~~l~~L~~L~Ls~n-~i~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~--  139 (716)
                      .+...+.|++|+|++| .+...    +...+...++|++|+|++|.|...    +...+...+.|++|+|++|.|...  
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            3456778888888888 77532    344566778888888888888643    233455567888888888888743  


Q ss_pred             --CCccccCCCCCceeec--ccccccCCC----CccccCCcCCcEEEeeccccc
Q 041300          140 --IPPEVCQLSSIEELFL--YSNHLNGSL----PPFLGNLSNIVRLYINNNSLS  185 (716)
Q Consensus       140 --~~~~~~~l~~L~~L~L--~~N~l~~~~----p~~~~~l~~L~~L~L~~n~l~  185 (716)
                        +...+...++|++|+|  ++|.+....    ...+...++|++|+|++|.+.
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence              3455667778888888  778886543    234455688899999888875

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.39  E-value=1e-07  Score=89.06  Aligned_cols=18  Identities=22%  Similarity=0.239  Sum_probs=8.6

Q ss_pred             ccCCCCCCEEEccCC-ccc
Q 041300          353 IGNMSQLQALDLSLN-HIV  370 (716)
Q Consensus       353 ~~~l~~L~~L~L~~n-~l~  370 (716)
                      +...++|++|+|++| .+.
T Consensus        32 l~~~~~L~~L~L~~n~~i~   50 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIP   50 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCC
T ss_pred             HhcCCCCCEEEecCCCCCC
Confidence            334445555555555 443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.33  E-value=1.1e-07  Score=93.42  Aligned_cols=39  Identities=26%  Similarity=0.353  Sum_probs=16.5

Q ss_pred             CCCCCEEEccCCcCCc--cCchhhcCcCCCCEEECcCCcCc
Q 041300          404 LIELEYLDFSANKFNN--SVPESLGNLLKLHYLGLSNNQFV  442 (716)
Q Consensus       404 l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~  442 (716)
                      +++|+.|+|++|.|++  .+|..+..+++|+.|+|++|+|.
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~  209 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK  209 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC
Confidence            3444444444444443  12233334444444444444443

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=98.05  E-value=2.9e-06  Score=83.86  Aligned_cols=87  Identities=17%  Similarity=0.171  Sum_probs=59.4

Q ss_pred             CcccccccCCCceEEEEEEc-CCCCE--EEEEEccccCCc-c-------------------chhhHHHHHHHHHHHhcCC
Q 041300          626 FDAEYCIGNGGHGSVYRAEL-PSGEV--VAVKKFHSSIPC-D-------------------QIADQKEFLTEVQALTEIR  682 (716)
Q Consensus       626 ~~~~~~ig~g~~g~v~~~~~-~~~~~--vavK~l~~~~~~-~-------------------~~~~~~~~~~ei~~l~~l~  682 (716)
                      |.....||+|+||.||+|.. .+|+.  ||||+++..... .                   .......+.+|+..+.+++
T Consensus        49 ~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~  128 (258)
T 1zth_A           49 TAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAK  128 (258)
T ss_dssp             EEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHH
Confidence            56678999999999999986 67888  999987543111 0                   0011236889999999999


Q ss_pred             CCCccccceEEEeCCeeeEEEcccCC-C----CHHhH
Q 041300          683 HRNIVKFYGFCSHAQHSFLVYEFLER-G----SLAAI  714 (716)
Q Consensus       683 H~niv~l~g~~~~~~~~~lv~Ey~~~-G----sL~~~  714 (716)
                      |+++.....+..  +..++||||+.+ |    +|.++
T Consensus       129 ~~~i~~p~~~~~--~~~~lVmE~~g~~g~~~~~L~~~  163 (258)
T 1zth_A          129 EAGVSVPQPYTY--MKNVLLMEFIGEDELPAPTLVEL  163 (258)
T ss_dssp             HTTCCCCCEEEE--ETTEEEEECCEETTEECCBHHHH
T ss_pred             hCCCCCCeEEEc--CCCEEEEEecCCCCCccccHHHH
Confidence            887533222222  356899999942 4    66554

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=97.93  E-value=1.6e-06  Score=89.59  Aligned_cols=89  Identities=8%  Similarity=0.098  Sum_probs=57.4

Q ss_pred             cCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCc-----c-----chhhHHHH--------HHHHHHHhcCCCCC
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPC-----D-----QIADQKEF--------LTEVQALTEIRHRN  685 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~-----~-----~~~~~~~~--------~~ei~~l~~l~H~n  685 (716)
                      .-|.....||.|+||.||+|.-.+|+.||||+++.....     .     .......+        .+|...|.++.+.+
T Consensus        95 ~iY~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~g  174 (397)
T 4gyi_A           95 DVYSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEG  174 (397)
T ss_dssp             SCSEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CEEEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcC
Confidence            348888999999999999998888999999987542110     0     00011122        34556666665555


Q ss_pred             ccccceEEEeCCeeeEEEcccCCCCHHhH
Q 041300          686 IVKFYGFCSHAQHSFLVYEFLERGSLAAI  714 (716)
Q Consensus       686 iv~l~g~~~~~~~~~lv~Ey~~~GsL~~~  714 (716)
                      +.....+...  ..+|||||++++.|.++
T Consensus       175 v~vp~p~~~~--~~~LVME~i~G~~L~~l  201 (397)
T 4gyi_A          175 FPVPEPIAQS--RHTIVMSLVDALPMRQV  201 (397)
T ss_dssp             CSCCCEEEEE--TTEEEEECCSCEEGGGC
T ss_pred             CCCCeeeecc--CceEEEEecCCccHhhh
Confidence            4333323222  24799999999888664

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.84  E-value=4.2e-06  Score=76.00  Aligned_cols=34  Identities=12%  Similarity=0.074  Sum_probs=17.3

Q ss_pred             CCcEEECCCCCccccCcccccCCCCCCEEECcCC
Q 041300           77 QLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSN  110 (716)
Q Consensus        77 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N  110 (716)
                      .|++||+|++.|+..--..+.++++|++|+|++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C   95 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC   95 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence            4555555555554433334445555555555555

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=97.84  E-value=1.1e-05  Score=85.88  Aligned_cols=61  Identities=16%  Similarity=0.078  Sum_probs=46.6

Q ss_pred             hhcCCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCC
Q 041300          622 ETNDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRH  683 (716)
Q Consensus       622 ~~~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H  683 (716)
                      .+..|...++||+|+||.||+|. ..+|+.||||++........ ...+.|.+|+.++..++|
T Consensus        76 ~~~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~-~~~~~~~~E~~~~~~l~~  137 (413)
T 3dzo_A           76 RPRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPS-NAIKQMKEEVLRLRLLRG  137 (413)
T ss_dssp             CCEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC-----CCHHHHHHHHGGGGSTT
T ss_pred             CceeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccH-HHHHHHHHHHHHHHhhcc
Confidence            34567888999999999999997 55789999999874322221 134679999999999987

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.76  E-value=1.3e-05  Score=72.69  Aligned_cols=82  Identities=12%  Similarity=0.083  Sum_probs=34.3

Q ss_pred             CCCEEEccCCcCCccCchhhcCcCCCCEEECcCCc-CcccCChhhhCC----CCCCEEECCCCc-CccccchhccCCCCC
Q 041300          406 ELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQ-FVLELPKELEKL----VQLSELDASHNL-FGGEIPFQICSLKSL  479 (716)
Q Consensus       406 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l----~~L~~L~ls~N~-l~~~~p~~~~~l~~L  479 (716)
                      .|+.||++++.+++.--..+.++++|+.|+|++|. ++..--..+..+    ++|++|+|++|. ++...-..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            34444444444443333334444445555554443 332211222222    135555555542 443333334444555


Q ss_pred             CEEECcCC
Q 041300          480 EKLNLSHN  487 (716)
Q Consensus       480 ~~L~ls~N  487 (716)
                      +.|+++++
T Consensus       142 ~~L~L~~c  149 (176)
T 3e4g_A          142 KYLFLSDL  149 (176)
T ss_dssp             CEEEEESC
T ss_pred             CEEECCCC
Confidence            55555544

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.07  E-value=0.00038  Score=64.44  Aligned_cols=10  Identities=10%  Similarity=0.421  Sum_probs=4.4

Q ss_pred             CCCCEEEccC
Q 041300          357 SQLQALDLSL  366 (716)
Q Consensus       357 ~~L~~L~L~~  366 (716)
                      +.|+.|+|++
T Consensus        41 ~~L~~L~L~~   50 (197)
T 1pgv_A           41 TDLKEVNINN   50 (197)
T ss_dssp             SSCCEEECTT
T ss_pred             CCccEEECCC
Confidence            3444444444

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=97.06  E-value=0.0013  Score=64.74  Aligned_cols=88  Identities=13%  Similarity=0.006  Sum_probs=69.1

Q ss_pred             hhcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCC-CCCccccceEEEeCCeee
Q 041300          622 ETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR-HRNIVKFYGFCSHAQHSF  700 (716)
Q Consensus       622 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~-H~niv~l~g~~~~~~~~~  700 (716)
                      ...+|......+.|+.+.||+.... +..+++|+.......    ....+.+|+++++.+. |..+.++++++...+..|
T Consensus        12 ~l~~~~~~~~~~g~s~~~v~~~~~~-~~~~vlK~~~~~~~~----~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~   86 (263)
T 3tm0_A           12 LIEKYRCVKDTEGMSPAKVYKLVGE-NENLYLKMTDSRYKG----TTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSN   86 (263)
T ss_dssp             HHTTSEEEECCSCCSSSEEEEEECS-SCEEEEEEECGGGTT----STTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEE
T ss_pred             HhccceeEeeccCCCCCeEEEEECC-CCcEEEEeCCcccCC----CHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceE
Confidence            3456877888888999999999754 678999998642111    1235888999998884 677889999998888999


Q ss_pred             EEEcccCCCCHHhH
Q 041300          701 LVYEFLERGSLAAI  714 (716)
Q Consensus       701 lv~Ey~~~GsL~~~  714 (716)
                      +||||++|.+|.+.
T Consensus        87 lv~e~i~G~~l~~~  100 (263)
T 3tm0_A           87 LLMSEADGVLCSEE  100 (263)
T ss_dssp             EEEECCSSEEHHHH
T ss_pred             EEEEecCCeehhhc
Confidence            99999999998764

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.05  E-value=0.00096  Score=57.62  Aligned_cols=58  Identities=19%  Similarity=0.285  Sum_probs=45.0

Q ss_pred             EEECCCCcCc-cccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCccccc
Q 041300          457 ELDASHNLFG-GEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGP  516 (716)
Q Consensus       457 ~L~ls~N~l~-~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~  516 (716)
                      .++.+++.++ ..+|..+.  ++|+.|+|++|+|+.+.++.|..+++|+.|+|++|++.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~Cd   70 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCD   70 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCS
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeecc
Confidence            6777777775 24454322  4688999999999988888899999999999999998764

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.99  E-value=0.00054  Score=63.35  Aligned_cols=61  Identities=16%  Similarity=0.124  Sum_probs=26.3

Q ss_pred             CCCCCEEECCCCcCcccc----chhccCCCCCCEEECcCCc---Ccc----cCCcCCcCCCCCCEEEccCCc
Q 041300          452 LVQLSELDASHNLFGGEI----PFQICSLKSLEKLNLSHNN---LSG----LIPNCFEGMHGLSIIDISDNQ  512 (716)
Q Consensus       452 l~~L~~L~ls~N~l~~~~----p~~~~~l~~L~~L~ls~N~---l~~----~~~~~~~~~~~L~~l~ls~N~  512 (716)
                      -+.|++|+|++|.|+...    -..+..-+.|+.|+|++|.   +..    .+...+..-++|+.|+++.|.
T Consensus        97 N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A           97 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             CCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            344555555555544321    1223333445556655432   221    112233344556666665444

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=96.71  E-value=0.00099  Score=65.45  Aligned_cols=82  Identities=16%  Similarity=0.124  Sum_probs=60.0

Q ss_pred             cCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCC--ccccceEEEeCCeeeE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRN--IVKFYGFCSHAQHSFL  701 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~n--iv~l~g~~~~~~~~~l  701 (716)
                      .++....+.+.|..+.||+....+|..++||.....       ....+.+|+++++.+++.+  +.+++++...++..++
T Consensus        20 ~~~~~~~~~~gg~~~~v~~~~~~~g~~~vlK~~~~~-------~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~   92 (264)
T 1nd4_A           20 FGYDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSG-------ALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWL   92 (264)
T ss_dssp             TTCEEEECSCTTSSCEEEEEECTTSCCEEEEEECSC-------TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEE
T ss_pred             CCCceEecccCCCCceEEEEecCCCCeEEEEeCCcc-------cchhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEE
Confidence            345444444466679999998777888999987542       1134778888888886545  4568888877778899


Q ss_pred             EEcccCCCCHH
Q 041300          702 VYEFLERGSLA  712 (716)
Q Consensus       702 v~Ey~~~GsL~  712 (716)
                      ||||++|.++.
T Consensus        93 v~e~i~G~~l~  103 (264)
T 1nd4_A           93 LLGEVPGQDLL  103 (264)
T ss_dssp             EEECCSSEETT
T ss_pred             EEEecCCcccC
Confidence            99999998874

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.45  E-value=0.0052  Score=52.94  Aligned_cols=36  Identities=22%  Similarity=0.229  Sum_probs=16.6

Q ss_pred             CCcEEECCCCCccccCcccccCCCCCCEEECcCCcC
Q 041300           77 QLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQL  112 (716)
Q Consensus        77 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l  112 (716)
                      +|++|+|++|+|+.+.+..|..+++|++|+|++|.+
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            344555555554444444444444444444444433

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=94.24  E-value=0.037  Score=57.04  Aligned_cols=80  Identities=14%  Similarity=0.270  Sum_probs=55.7

Q ss_pred             cccccCCCceEEEEEEcCCCCEEEEEEcc--ccCCccchhhHHHHHHHHHHHhcCC--CCCccccceEEEeC---CeeeE
Q 041300          629 EYCIGNGGHGSVYRAELPSGEVVAVKKFH--SSIPCDQIADQKEFLTEVQALTEIR--HRNIVKFYGFCSHA---QHSFL  701 (716)
Q Consensus       629 ~~~ig~g~~g~v~~~~~~~~~~vavK~l~--~~~~~~~~~~~~~~~~ei~~l~~l~--H~niv~l~g~~~~~---~~~~l  701 (716)
                      .+.++.|.++.||+....+ ..+++|+..  .....   .....+.+|..+++.++  +..++++++++.+.   +..|+
T Consensus        43 ~~~l~~G~sn~~y~v~~~~-~~~vlr~~~~p~~~~~---~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~  118 (359)
T 3dxp_A           43 VEQFKGGQSNPTFKLVTPG-QTYVMRAKPGPKSKLL---PSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFY  118 (359)
T ss_dssp             EEECCC-CCSCEEEEECSS-CEEEEECCCC-------------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEE
T ss_pred             EEEcCCcccceEEEEEECC-ceEEEEeCCCCCCCCC---CcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEE
Confidence            4568999999999998754 577888765  32111   12345788999998886  45678888888766   45799


Q ss_pred             EEcccCCCCHH
Q 041300          702 VYEFLERGSLA  712 (716)
Q Consensus       702 v~Ey~~~GsL~  712 (716)
                      ||||++|..+.
T Consensus       119 vme~v~G~~l~  129 (359)
T 3dxp_A          119 IMEFVSGRVLW  129 (359)
T ss_dssp             EEECCCCBCCC
T ss_pred             EEEecCCeecC
Confidence            99999998763

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=92.43  E-value=0.28  Score=49.16  Aligned_cols=76  Identities=22%  Similarity=0.246  Sum_probs=59.0

Q ss_pred             ccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCC---CCCccccceEEEeCCeeeEEEc
Q 041300          628 AEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR---HRNIVKFYGFCSHAQHSFLVYE  704 (716)
Q Consensus       628 ~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~---H~niv~l~g~~~~~~~~~lv~E  704 (716)
                      ....++.|.+..+|+... ++..++||+-...       ....|.+|.+.|+.+.   ...++++++++...+..|+|||
T Consensus        40 ~~~~l~gG~~n~~y~v~~-~~~~~vlK~~~~~-------~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvme  111 (312)
T 3jr1_A           40 HKEKLYSGEMNEIWLIND-EVQTVFVKINERS-------YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLLE  111 (312)
T ss_dssp             EEEEECCSSSSEEEEEES-SSCEEEEEEEEGG-------GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEEE
T ss_pred             eeEEeCCccceeeeEEEE-CCCeEEEEeCCcc-------cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEEE
Confidence            345689999999999986 4667888986531       2456888988887773   3567888888887888999999


Q ss_pred             ccCCCCH
Q 041300          705 FLERGSL  711 (716)
Q Consensus       705 y~~~GsL  711 (716)
                      |+++..+
T Consensus       112 ~l~G~~~  118 (312)
T 3jr1_A          112 ALNKSKN  118 (312)
T ss_dssp             CCCCCCC
T ss_pred             eccCCCC
Confidence            9999764

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=92.32  E-value=0.24  Score=49.00  Aligned_cols=78  Identities=21%  Similarity=0.272  Sum_probs=53.6

Q ss_pred             CcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCC---CccccceEEEeCCeeeEE
Q 041300          626 FDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHR---NIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       626 ~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~---niv~l~g~~~~~~~~~lv  702 (716)
                      ......+|.|..+.||+.++.+|+.|.||+-......    ....|.+|.+.|+.+.-.   -+.+.+++    +..++|
T Consensus        17 v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~----~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~----~~~~lv   88 (288)
T 3f7w_A           17 VAAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPA----LDGLFRAEALGLDWLGRSFGSPVPQVAGW----DDRTLA   88 (288)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCC----CTTHHHHHHHHHHHHTCSTTCCSCCEEEE----ETTEEE
T ss_pred             eEEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCCcc----hhhHHHHHHHHHHHHHhhCCCCcceEEec----cCceEE
Confidence            4445668999999999999999999999986542211    124588899888877422   22333332    234899


Q ss_pred             EcccCCCCH
Q 041300          703 YEFLERGSL  711 (716)
Q Consensus       703 ~Ey~~~GsL  711 (716)
                      |||++++..
T Consensus        89 ~e~l~~~~~   97 (288)
T 3f7w_A           89 MEWVDERPP   97 (288)
T ss_dssp             EECCCCCCC
T ss_pred             EEeecccCC
Confidence            999987653

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=90.15  E-value=0.89  Score=44.21  Aligned_cols=82  Identities=12%  Similarity=0.112  Sum_probs=57.3

Q ss_pred             cCCcccccccCCCce-EEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCC-CCCccccceEEEeCCeee
Q 041300          624 NDFDAEYCIGNGGHG-SVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR-HRNIVKFYGFCSHAQHSF  700 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g-~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~-H~niv~l~g~~~~~~~~~  700 (716)
                      .++.... +..|..| .||+.... ++..+.||+-...       ...++.+|...|..+. +--+.++++++.+++..|
T Consensus        25 ~g~~~~~-~~~G~S~~~v~rl~~~~~~~~~~lk~~~~~-------~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~   96 (272)
T 4gkh_A           25 YGYRWAR-DNVGQSGATIYRLYGKPNAPELFLKHGKGS-------VANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAW   96 (272)
T ss_dssp             TTCEEEE-EECSSSSCEEEEEECCTTCCCEEEEEEETH-------HHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEE
T ss_pred             cCCeEEE-ccCCCcCCeEEEEEecCCCeEEEEEECCCC-------CHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEE
Confidence            3444433 3445544 68987654 4567888875431       3456888998888774 334668888998899999


Q ss_pred             EEEcccCCCCHHh
Q 041300          701 LVYEFLERGSLAA  713 (716)
Q Consensus       701 lv~Ey~~~GsL~~  713 (716)
                      +||||+++.++.+
T Consensus        97 lvme~l~G~~~~~  109 (272)
T 4gkh_A           97 LLTTAIPGKTAFQ  109 (272)
T ss_dssp             EEEECCCSEEHHH
T ss_pred             EEEEeeCCccccc
Confidence            9999999987654

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=90.05  E-value=0.32  Score=50.73  Aligned_cols=79  Identities=15%  Similarity=0.070  Sum_probs=48.4

Q ss_pred             cccccCCCceEEEEEEcC-CCCEEEEEEccccCC--c-cchhhHHHHHHHHHHHhcCCC--CCcc-ccceEEEeCCeeeE
Q 041300          629 EYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIP--C-DQIADQKEFLTEVQALTEIRH--RNIV-KFYGFCSHAQHSFL  701 (716)
Q Consensus       629 ~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~--~-~~~~~~~~~~~ei~~l~~l~H--~niv-~l~g~~~~~~~~~l  701 (716)
                      .+.+|.|.++.||++... +++.|+||...+...  . ........+.+|.+++..+..  +..| +++.+  +.+..++
T Consensus        35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--d~~~~~l  112 (397)
T 2olc_A           35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVT  112 (397)
T ss_dssp             EEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEE
T ss_pred             EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--cCCccEE
Confidence            346899999999999754 467899998654211  0 000012346778888877632  3444 44432  4556789


Q ss_pred             EEcccCCC
Q 041300          702 VYEFLERG  709 (716)
Q Consensus       702 v~Ey~~~G  709 (716)
                      ||||+++.
T Consensus       113 vmE~l~g~  120 (397)
T 2olc_A          113 VMEDLSHL  120 (397)
T ss_dssp             EECCCTTS
T ss_pred             EEEeCCCc
Confidence            99999864

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A

Probab=89.86  E-value=0.049  Score=58.09  Aligned_cols=62  Identities=10%  Similarity=-0.018  Sum_probs=18.0

Q ss_pred             cccccCCCceEEEEEEcCC-CCEEEE------EEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEe
Q 041300          629 EYCIGNGGHGSVYRAELPS-GEVVAV------KKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSH  695 (716)
Q Consensus       629 ~~~ig~g~~g~v~~~~~~~-~~~vav------K~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~  695 (716)
                      .+.+|   ||.||+|.+.. ..+|||      |..+......  .....|.+|..++...+|||+++.+++...
T Consensus       147 ~~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~~--e~~~~~~rea~l~~~~~H~niv~~h~f~~~  215 (463)
T 3cxl_A          147 YEHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGVSE--KRLTSLVRRATLKENEQIPKYEKIHNFKVH  215 (463)
T ss_dssp             TTTSS---BCCC---------CCBGGGC-------------------------------------CBCCCEEEE
T ss_pred             cccCC---chhhhcccccccCCchhhhhccCccccccccccc--cccccccccccccccccccccCCCcceEEe
Confidence            44565   99999998854 367888      7665422111  134568899999999999999999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	716
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-24
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-19
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-19
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-23
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-21
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-21
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-06
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	5e-21
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	7e-21
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	3e-20
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	9e-20
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-19
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-18
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-16
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	3e-19
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-19
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-16
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-14
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-06
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	1e-18
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	1e-18
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	2e-18
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	2e-18
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	3e-18
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	3e-18
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	3e-18
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	4e-18
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	5e-18
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	5e-18
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	1e-17
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	2e-17
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	2e-17
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	2e-17
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	3e-17
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	5e-17
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	6e-17
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	6e-17
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	6e-17
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	8e-17
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	1e-16
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	2e-16
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	2e-16
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	3e-16
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	4e-16
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	5e-16
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	7e-16
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	3e-15
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	3e-15
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	3e-15
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	3e-15
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	6e-15
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	7e-15
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	9e-15
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	1e-14
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	2e-14
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	2e-14
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	7e-14
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	1e-13
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	2e-13
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	2e-13
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	3e-13
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	5e-13
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	1e-12
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	1e-12
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	1e-12
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	1e-12
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	4e-12
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	4e-12
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	5e-12
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	7e-12
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	2e-11
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	4e-11
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-11
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	9e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.002
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	2e-10
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	3e-10
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	6e-10
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	3e-09
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-09
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	7e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	2e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	9e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.004
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.004
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	5e-06
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	4e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	8e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	1e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	4e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	4e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	5e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.002
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	4e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	7e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.001
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.003
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.003
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	9e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.001
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.001
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.003

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score =  100 bits (250), Expect = 6e-24
 Identities = 82/352 (23%), Positives = 134/352 (38%), Gaps = 53/352 (15%)

Query: 3   EEADALLKWKASLQSHNQSLLPSWTNASTNVSSKISPCAWYGISCNDAG---RVTNISLR 59
           ++  ALL+ K  L   N + L SW       ++      W G+ C+      RV N+ L 
Sbjct: 6   QDKQALLQIKKDL--GNPTTLSSWLP-----TTDCCNRTWLGVLCDTDTQTYRVNNLDLS 58

Query: 60  NTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSN-QLSGKIPA 118
              L                            IPS + NL  L+++ +     L G IP 
Sbjct: 59  GLNLPKPY-----------------------PIPSSLANLPYLNFLYIGGINNLVGPIPP 95

Query: 119 EVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLY 178
            +  LT L  L      + G+IP  + Q+ ++  L    N L+G+LPP + +L N+V + 
Sbjct: 96  AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155

Query: 179 INNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSM 238
            + N +SG+I  + G+   LF                        N L+G IPP+F N  
Sbjct: 156 FDGNRISGAIPDSYGSFSKLFTSMTI-----------------SRNRLTGKIPPTFANLN 198

Query: 239 LTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLT 298
           L ++ LS N   G            +   +++N     + +      +L  + L  N + 
Sbjct: 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKV-GLSKNLNGLDLRNNRIY 257

Query: 299 GNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIP 350
           G + + L     L  +++S NN  GEI    G   +      + N    G P
Sbjct: 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 87.9 bits (216), Expect = 2e-19
 Identities = 60/280 (21%), Positives = 110/280 (39%), Gaps = 20/280 (7%)

Query: 169 GNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNH-LS 227
                +  L ++  +L                     +P S+ NL  L  L +   + L 
Sbjct: 47  TQTYRVNNLDLSGLNLPKPY----------------PIPSSLANLPYLNFLYIGGINNLV 90

Query: 228 GSIPPSFGN-SMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTS 286
           G IPP+    + L +L ++  + +G +P  + +   L     S N   GT+P S+ +  +
Sbjct: 91  GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150

Query: 287 LIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNIT 346
           L+ +  +GN ++G I ++ G +  L        N              L  +++S N + 
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLE 210

Query: 347 GGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIE 406
           G      G+    Q + L+ N +  ++ K     N      LR N++ G LP  +  L  
Sbjct: 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLD-LRNNRIYGTLPQGLTQLKF 269

Query: 407 LEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELP 446
           L  L+ S N     +P+  GNL +      +NN+ +   P
Sbjct: 270 LHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 85.6 bits (210), Expect = 9e-19
 Identities = 59/258 (22%), Positives = 100/258 (38%), Gaps = 6/258 (2%)

Query: 287 LIRVRLNGNNLTGN--ISEALGLYPNLTFIDLSRN-NFYGEISSNWGKCPKLGTLNVSMN 343
           +  + L+G NL     I  +L   P L F+ +    N  G I     K  +L  L ++  
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 344 NITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGS 403
           N++G IP  +  +  L  LD S N + G +P  +  L +L  +   GN+++G +P   GS
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 404 LIELEYLDFSA-NKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASH 462
             +L      + N+    +P +  NL         N                     A +
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 463 NLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNSTA 522
           +L        +    +    +L +N + G +P     +  L  +++S N L G +P    
Sbjct: 232 SLAFDLGKVGLSKNLNGL--DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN 289

Query: 523 FRNAPVEALEGNKELCGG 540
            +   V A   NK LCG 
Sbjct: 290 LQRFDVSAYANNKCLCGS 307

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 79.0 bits (193), Expect = 1e-16
 Identities = 63/271 (23%), Positives = 104/271 (38%), Gaps = 6/271 (2%)

Query: 209 SVGNLTNLKSLGLMDNHLSG--SIPPSFGN-SMLTWLTLSGNH-FTGYLPHNICRGGLLE 264
           +      + +L L   +L     IP S  N   L +L + G +   G +P  I +   L 
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104

Query: 265 AFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGE 324
              ++  +  G IP+ L    +L+ +  + N L+G +  ++   PNL  I    N   G 
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164

Query: 325 ISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLT 384
           I  ++G   KL T      N   G          L  +DLS N + G+     G   + T
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN-T 223

Query: 385 KLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLE 444
           + I            ++G    L  LD   N+   ++P+ L  L  LH L +S N    E
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283

Query: 445 LPKELEKLVQLSELDASHNLFGGEIPFQICS 475
           +P +   L +      ++N      P   C+
Sbjct: 284 IP-QGGNLQRFDVSAYANNKCLCGSPLPACT 313

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 99.7 bits (247), Expect = 5e-23
 Identities = 68/389 (17%), Positives = 143/389 (36%), Gaps = 26/389 (6%)

Query: 123 LTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNN 182
           L            +  ++      L  +  L      +  S+   +  L+N+ ++  +NN
Sbjct: 21  LAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNN 76

Query: 183 SLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWL 242
            L+   +T + NL  L ++ ++   ++        +   +      +   +  + +    
Sbjct: 77  QLTD--ITPLKNLTKLVDILMNNNQIADITPLANLTN--LTGLTLFNNQITDIDPLKNLT 132

Query: 243 TLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNIS 302
            L+    +     +I     L +        Q T  + L N T+L R+ ++ N ++    
Sbjct: 133 NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV 192

Query: 303 EALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQAL 362
                  NL  +  + N          G    L  L+++ N +       + +++ L  L
Sbjct: 193 L--AKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDL 246

Query: 363 DLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVP 422
           DL+ N I    P  L  L  LT+L L  NQ++   P    + +    L+ +  +  + + 
Sbjct: 247 DLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPIS 304

Query: 423 ESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKL 482
               NL  L YL L  N      P  +  L +L  L  ++N         + +L ++  L
Sbjct: 305 ----NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWL 356

Query: 483 NLSHNNLSGLIPNCFEGMHGLSIIDISDN 511
           +  HN +S L P     +  ++ + ++D 
Sbjct: 357 SAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 95.5 bits (236), Expect = 1e-21
 Identities = 69/366 (18%), Positives = 127/366 (34%), Gaps = 34/366 (9%)

Query: 170 NLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLS----VGNLTNLKSLGLMDNH 225
            L+  ++  +   +++ ++  +  +L  +  L    L +     V  L NL  +   +N 
Sbjct: 20  ALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQ 77

Query: 226 LSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCT 285
           L+  I P    + L  + ++ N      P              ++      +        
Sbjct: 78  LTD-ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNR 136

Query: 286 SLIR-------------VRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKC 332
             +                L   +    +++   L    T   L  ++      S   K 
Sbjct: 137 LELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKL 196

Query: 333 PKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQ 392
             L +L  + N I+   P  I  ++ L  L L+ N +       L  L +LT L L  NQ
Sbjct: 197 TNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQ 252

Query: 393 LTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKL 452
           ++   P  +  L +L  L   AN+ +N  P  L  L  L  L L+ NQ   E    +  L
Sbjct: 253 ISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQL--EDISPISNL 306

Query: 453 VQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQ 512
             L+ L    N      P    SL  L++L  ++N +S    +    +  ++ +    NQ
Sbjct: 307 KNLTYLTLYFNNISDISPV--SSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQ 362

Query: 513 LQGPVP 518
           +    P
Sbjct: 363 ISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 95.1 bits (235), Expect = 1e-21
 Identities = 74/387 (19%), Positives = 135/387 (34%), Gaps = 27/387 (6%)

Query: 53  VTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQL 112
                L  T ++ T+   S +   Q+  L     G        +  L  L+ I+  +NQL
Sbjct: 24  KMKTVLGKTNVTDTV---SQTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQL 78

Query: 113 SGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLS 172
           +   P  +  LT L  +    N++    P                N+    + P     +
Sbjct: 79  TDITP--LKNLTKLVDILMNNNQIADITPLANLTN---LTGLTLFNNQITDIDPLKNLTN 133

Query: 173 NIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPP 232
                  +N     S L+ + +L+ L   +       + NLT L+ L +  N     I  
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSDISV 192

Query: 233 SFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRL 292
               + L  L  + N  +   P  I     L+   ++ N  +     +L + T+L  + L
Sbjct: 193 LAKLTNLESLIATNNQISDITPLGILTN--LDELSLNGNQLKD--IGTLASLTNLTDLDL 248

Query: 293 NGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPRE 352
             N ++      L     LT + L  N                   N+ +N         
Sbjct: 249 ANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALT----NLELNENQLEDISP 302

Query: 353 IGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDF 412
           I N+  L  L L  N+I    P  +  L  L +L    N+++    + + +L  + +L  
Sbjct: 303 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSA 358

Query: 413 SANKFNNSVPESLGNLLKLHYLGLSNN 439
             N+ ++  P  L NL ++  LGL++ 
Sbjct: 359 GHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.2 bits (116), Expect = 1e-06
 Identities = 21/115 (18%), Positives = 41/115 (35%), Gaps = 7/115 (6%)

Query: 20  QSLLPSWTNASTNVSSKISPCAWYGISCNDAGRVTNISLRNTGLSGTLRDFSFSSFPQLV 79
            ++ P     +                 ++   +T ++L    +S        SS  +L 
Sbjct: 276 SNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS---PVSSLTKLQ 332

Query: 80  HLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFN 134
            L  + N    +  S + NLT ++++S   NQ+S   P  +  LT +  L     
Sbjct: 333 RLFFANNKV--SDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.9 bits (225), Expect = 5e-21
 Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 5/92 (5%)

Query: 624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRH 683
            D      +G G  G V   +      VA+K        +    + EF+ E + +  + H
Sbjct: 4   KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIK-----EGSMSEDEFIEEAKVMMNLSH 58

Query: 684 RNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
             +V+ YG C+  +  F++ E++  G L   L
Sbjct: 59  EKLVQLYGVCTKQRPIFIITEYMANGCLLNYL 90

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.9 bits (225), Expect = 7e-21
 Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 5/88 (5%)

Query: 624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRH 683
           ++      IG+G  G V+     + + VA+K             +++F+ E + + ++ H
Sbjct: 5   SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGA-----MSEEDFIEEAEVMMKLSH 59

Query: 684 RNIVKFYGFCSHAQHSFLVYEFLERGSL 711
             +V+ YG C       LV+EF+E G L
Sbjct: 60  PKLVQLYGVCLEQAPICLVFEFMEHGCL 87

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.1 bits (223), Expect = 3e-20
 Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 4/94 (4%)

Query: 623 TNDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI 681
            +DF+    +G G  G V++    PSG V+A K  H  I   + A + + + E+Q L E 
Sbjct: 5   DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEI---KPAIRNQIIRELQVLHEC 61

Query: 682 RHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
               IV FYG         +  E ++ GSL  +L
Sbjct: 62  NSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVL 95

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.8 bits (217), Expect = 9e-20
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 8/98 (8%)

Query: 618 EIVRETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQA 677
           E+ RE         +G G  G V+         VAVK                FL E   
Sbjct: 9   EVPRE--TLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGS-----MSPDAFLAEANL 61

Query: 678 LTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
           + +++H+ +V+ Y   +     +++ E++E GSL   L
Sbjct: 62  MKQLQHQRLVRLYAVVTQEPI-YIITEYMENGSLVDFL 98

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 87.8 bits (216), Expect = 1e-19
 Identities = 48/268 (17%), Positives = 84/268 (31%), Gaps = 11/268 (4%)

Query: 263 LEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFY 322
                +  N          +N  +L  + L  N ++     A      L  + LS+N   
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 323 GEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNS 382
                      +L      +  +   +   +  M  ++ L  +     G        +  
Sbjct: 93  ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGTNPLKSSGIENGAFQGMKK 151

Query: 383 LTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFV 442
           L+ + +    +T       G    L  L    NK       SL  L  L  LGLS N   
Sbjct: 152 LSYIRIADTNITTIPQ---GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 208

Query: 443 LELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHG 502
                 L     L EL  ++N    ++P  +   K ++ + L +NN+S +  N F     
Sbjct: 209 AVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY 267

Query: 503 ------LSIIDISDNQLQGPVPNSTAFR 524
                  S + +  N +Q      + FR
Sbjct: 268 NTKKASYSGVSLFSNPVQYWEIQPSTFR 295

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 84.3 bits (207), Expect = 2e-18
 Identities = 51/305 (16%), Positives = 98/305 (32%), Gaps = 30/305 (9%)

Query: 40  CAWYGISCNDAGRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNL 99
           C    + C+D G               L        P    LDL  N           NL
Sbjct: 10  CHLRVVQCSDLG---------------LEKVPKDLPPDTALLDLQNNKITEIKDGDFKNL 54

Query: 100 TKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNH 159
             L  + L +N++S   P     L  L+ L    N+L   +P ++ +  +++EL ++ N 
Sbjct: 55  KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPK--TLQELRVHENE 111

Query: 160 LNGSLPPFLGNLSNIVRLYINN--NSLSGSILTNIGNLKFLFELDLS---FLPLSVGNLT 214
           +          L+ ++ + +       SG        +K L  + ++      +  G   
Sbjct: 112 ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP 171

Query: 215 NLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQ 274
           +L  L L  N ++     S              +    + +           +   N+  
Sbjct: 172 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 231

Query: 275 GTIPESLRNCTSLIRVRLNGNNLTGNISEA------LGLYPNLTFIDLSRNNF-YGEISS 327
             +P  L +   +  V L+ NN++   S             + + + L  N   Y EI  
Sbjct: 232 VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP 291

Query: 328 NWGKC 332
           +  +C
Sbjct: 292 STFRC 296

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 77.8 bits (190), Expect = 3e-16
 Identities = 45/230 (19%), Positives = 83/230 (36%), Gaps = 4/230 (1%)

Query: 306 GLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLS 365
            L P+   +DL  N        ++     L TL +  N I+   P     + +L+ L LS
Sbjct: 28  DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87

Query: 366 LNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESL 425
            N +     K    L  L        ++   +   +  +I +  L  +  K +     + 
Sbjct: 88  KNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV-ELGTNPLKSSGIENGAF 146

Query: 426 GNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLS 485
             + KL Y+ +++      +P+ L     L+EL    N         +  L +L KL LS
Sbjct: 147 QGMKKLSYIRIADTNI-TTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 203

Query: 486 HNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNSTAFRNAPVEALEGNK 535
            N++S +          L  + +++N+L          +   V  L  N 
Sbjct: 204 FNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN 253

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 77.0 bits (188), Expect = 5e-16
 Identities = 46/206 (22%), Positives = 77/206 (37%), Gaps = 4/206 (1%)

Query: 333 PKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQ 392
           P    L++  N IT     +  N+  L  L L  N I    P     L  L +L L  NQ
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 393 LTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKL 452
           L         +L EL   +    K   SV   L  ++ +  LG +  +         + +
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV-ELGTNPLKSSGIENGAFQGM 149

Query: 453 VQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQ 512
            +LS +  +       IP  +    SL +L+L  N ++ +     +G++ L+ + +S N 
Sbjct: 150 KKLSYIRIADTNI-TTIPQGLPP--SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 206

Query: 513 LQGPVPNSTAFRNAPVEALEGNKELC 538
           +      S A      E    N +L 
Sbjct: 207 ISAVDNGSLANTPHLRELHLNNNKLV 232

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.8 bits (212), Expect = 3e-19
 Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 8/93 (8%)

Query: 624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRH 683
            +      IG G  G V   +   G  VAVK   +       A  + FL E   +T++RH
Sbjct: 7   KELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKND------ATAQAFLAEASVMTQLRH 59

Query: 684 RNIVKFYGFCSHAQHS-FLVYEFLERGSLAAIL 715
            N+V+  G     +   ++V E++ +GSL   L
Sbjct: 60  SNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYL 92

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.0 bits (211), Expect = 4e-19
 Identities = 49/264 (18%), Positives = 87/264 (32%), Gaps = 6/264 (2%)

Query: 229 SIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLI 288
           ++P     +    + L GN  +     +      L    +  N        +      L 
Sbjct: 25  AVPVGIPAA-SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83

Query: 289 RVRLNGNNLTGNI-SEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITG 347
           ++ L+ N    ++          L  + L R          +     L  L +  N +  
Sbjct: 84  QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 143

Query: 348 GIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIEL 407
                  ++  L  L L  N I     +    L+SL +L+L  N++    P     L  L
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203

Query: 408 EYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGG 467
             L   AN  +    E+L  L  L YL L++N +V +  +       L +   S +    
Sbjct: 204 MTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD-CRARPLWAWLQKFRGSSSEVPC 262

Query: 468 EIPFQICSLKSLEKLNLSHNNLSG 491
            +P     L   +   L+ N+L G
Sbjct: 263 SLPQ---RLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.7 bits (192), Expect = 1e-16
 Identities = 46/283 (16%), Positives = 90/283 (31%), Gaps = 14/283 (4%)

Query: 142 PEVCQLSSIEELFLYSNHLN-GSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFL-- 198
           P  C   +  ++          ++P  +   +   R++++ N +S     +    + L  
Sbjct: 3   PGACVCYNEPKVTTSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTI 60

Query: 199 -----FELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGN-SMLTWLTLSGNHFTGY 252
                  L         G     +     +  L    P +F     L  L L        
Sbjct: 61  LWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL 120

Query: 253 LPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLT 312
            P        L+   + +N  Q    ++ R+  +L  + L+GN ++     A     +L 
Sbjct: 121 GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD 180

Query: 313 FIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGE 372
            + L +N         +    +L TL +  NN++      +  +  LQ L L+ N  V +
Sbjct: 181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240

Query: 373 IPKELGKLNSLTKLILRGNQLTGRLPTEIG--SLIELEYLDFS 413
                     L K     +++   LP  +    L  L   D  
Sbjct: 241 CR-ARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQ 282

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.5 bits (176), Expect = 2e-14
 Identities = 41/243 (16%), Positives = 73/243 (30%), Gaps = 7/243 (2%)

Query: 14  SLQSHNQSLLPSWTNASTNVSSKISPCAWYGISCNDAGRVTNISLRNTGLSGTLRDFSFS 73
            +     +   +  N +               +      +  + L +     ++   +F 
Sbjct: 43  RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFH 102

Query: 74  SFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQF 133
              +L  L L   G     P     L  L Y+ L  N L          L +L  L    
Sbjct: 103 GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG 162

Query: 134 NELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIG 193
           N +          L S++ L L+ N +    P    +L  ++ LY+  N+LS      + 
Sbjct: 163 NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA 222

Query: 194 NLKFLFELDLSFLPLS-----VGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNH 248
            L+ L  L L+  P             L+      + +  S+P            L+ N 
Sbjct: 223 PLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAG--RDLKRLAAND 280

Query: 249 FTG 251
             G
Sbjct: 281 LQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (110), Expect = 3e-06
 Identities = 28/150 (18%), Positives = 53/150 (35%), Gaps = 3/150 (2%)

Query: 372 EIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKL 431
            +P  +    +  ++ L GN+++        +   L  L   +N        +   L  L
Sbjct: 25  AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 432 HYLGLSNNQFVLEL-PKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLS 490
             L LS+N  +  + P     L +L  L           P     L +L+ L L  N L 
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 491 GLIPNCFEGMHGLSIIDISDNQLQGPVPNS 520
            L  + F  +  L+ + +  N++      +
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERA 172

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 85.2 bits (210), Expect = 1e-18
 Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 16/109 (14%)

Query: 616 YDEIVRETNDFDAEY---------CIGNGGHGSVYRAELPS----GEVVAVKKFHSSIPC 662
           +++      +F  E           IG G  G V    L         VA+K   S    
Sbjct: 9   FEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTE 68

Query: 663 DQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
            Q    ++FL+E   + +  H N++   G  + +    ++ EF+E GSL
Sbjct: 69  KQR---RDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSL 114

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 85.1 bits (210), Expect = 1e-18
 Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 4/94 (4%)

Query: 623 TNDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI 681
            + +D    +G G    V  AE   + ++VA+K             +     E+  L +I
Sbjct: 8   RDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKK---ALEGKEGSMENEIAVLHKI 64

Query: 682 RHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
           +H NIV          H +L+ + +  G L   +
Sbjct: 65  KHPNIVALDDIYESGGHLYLIMQLVSGGELFDRI 98

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.0 bits (207), Expect = 2e-18
 Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 8/94 (8%)

Query: 618 EIVRETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQA 677
           EI RE      E  +G G  G V+         VA+K              + FL E Q 
Sbjct: 13  EIPRE--SLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG-----TMSPEAFLQEAQV 65

Query: 678 LTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
           + ++RH  +V+ Y   S  +  ++V E++ +GSL
Sbjct: 66  MKKLRHEKLVQLYAVVSE-EPIYIVTEYMSKGSL 98

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 85.1 bits (210), Expect = 2e-18
 Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 5/93 (5%)

Query: 624 NDFDAEYCIGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR 682
           + +D    +G G  G V+R  E  +G   A K     +     +D++    E+Q ++ +R
Sbjct: 26  DHYDIHEELGTGAFGVVHRVTERATGNNFAAKF----VMTPHESDKETVRKEIQTMSVLR 81

Query: 683 HRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
           H  +V  +          ++YEF+  G L   +
Sbjct: 82  HPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKV 114

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 83.6 bits (206), Expect = 3e-18
 Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 6/101 (5%)

Query: 616 YDEIVRETNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTE 674
           YD+   E  D   ++ +G G +G VY          VAVK            + +EFL E
Sbjct: 9   YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-----MEVEEFLKE 63

Query: 675 VQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
              + EI+H N+V+  G C+     +++ EF+  G+L   L
Sbjct: 64  AAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYL 104

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 84.7 bits (209), Expect = 3e-18
 Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 5/93 (5%)

Query: 624 NDFDAEYCIGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR 682
           + +D    +G+G  G V+R  E  +G V   K  ++        D+     E+  + ++ 
Sbjct: 29  DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINT----PYPLDKYTVKNEISIMNQLH 84

Query: 683 HRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
           H  ++  +          L+ EFL  G L   +
Sbjct: 85  HPKLINLHDAFEDKYEMVLILEFLSGGELFDRI 117

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.1 bits (205), Expect = 3e-18
 Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 7/98 (7%)

Query: 618 EIVRETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQA 677
           EI            IG+G  G+VY+ +      VAVK  + + P  Q    + F  EV  
Sbjct: 4   EIPDG--QITVGQRIGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQ--QLQAFKNEVGV 57

Query: 678 LTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
           L + RH NI+ F G+ +      +V ++ E  SL   L
Sbjct: 58  LRKTRHVNILLFMGYSTA-PQLAIVTQWCEGSSLYHHL 94

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.7 bits (206), Expect = 4e-18
 Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 15/113 (13%)

Query: 613 KLVYD---EIVRETNDFDAEYCIGNGGHGSVYRAEL------PSGEVVAVKKFHSSIPCD 663
           +L YD   E  R  N       +G G  G V  A         +   VAVK      P  
Sbjct: 11  QLPYDHKWEFPR--NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLK---PSA 65

Query: 664 QIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
            + +++  ++E++ L+ +  H NIV   G C+    + ++ E+   G L   L
Sbjct: 66  HLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFL 118

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.7 bits (204), Expect = 5e-18
 Identities = 23/104 (22%), Positives = 49/104 (47%), Gaps = 8/104 (7%)

Query: 616 YDEIVRETN---DFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEF 671
           Y+ + R+ N    ++    +G+G  G VY+A+   +  + A K     I      + +++
Sbjct: 1   YEHVTRDLNPEDFWEIIGELGDGAFGKVYKAQNKETSVLAAAKV----IDTKSEEELEDY 56

Query: 672 LTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
           + E+  L    H NIVK      +  + +++ EF   G++ A++
Sbjct: 57  MVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVM 100

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 83.1 bits (205), Expect = 5e-18
 Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 2/85 (2%)

Query: 632 IGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
           IG+G  G+VY A  + + EVVA+KK   S         ++ + EV+ L ++RH N +++ 
Sbjct: 23  IGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSN-EKWQDIIKEVRFLQKLRHPNTIQYR 81

Query: 691 GFCSHAQHSFLVYEFLERGSLAAIL 715
           G       ++LV E+    +   + 
Sbjct: 82  GCYLREHTAWLVMEYCLGSASDLLE 106

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.0 bits (202), Expect = 1e-17
 Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 5/85 (5%)

Query: 632 IGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
           IG G  G+VY A ++ +G+ VA+++    +   Q   ++  + E+  + E ++ NIV + 
Sbjct: 28  IGQGASGTVYTAMDVATGQEVAIRQ----MNLQQQPKKELIINEILVMRENKNPNIVNYL 83

Query: 691 GFCSHAQHSFLVYEFLERGSLAAIL 715
                    ++V E+L  GSL  ++
Sbjct: 84  DSYLVGDELWVVMEYLAGGSLTDVV 108

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.2 bits (200), Expect = 2e-17
 Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 2/96 (2%)

Query: 621 RETNDFDAEYCIGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALT 679
           +   DF     +G G   +V  A EL +    A+K         +         E   ++
Sbjct: 5   KRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKE-NKVPYVTRERDVMS 63

Query: 680 EIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
            + H   VK Y      +  +    + + G L   +
Sbjct: 64  RLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYI 99

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 80.9 bits (199), Expect = 2e-17
 Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 6/98 (6%)

Query: 623 TNDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI 681
           ++ ++    +G GG   V+ A  L     VAVK   + +  D  +    F  E Q    +
Sbjct: 6   SDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDP-SFYLRFRREAQNAAAL 64

Query: 682 RHRNIVKFYGFCSHAQHS----FLVYEFLERGSLAAIL 715
            H  IV  Y        +    ++V E+++  +L  I+
Sbjct: 65  NHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIV 102

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.4 bits (198), Expect = 2e-17
 Identities = 23/94 (24%), Positives = 49/94 (52%), Gaps = 5/94 (5%)

Query: 625 DFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRH 683
           D++  Y IG G +G   +      G+++  K+       +   +++  ++EV  L E++H
Sbjct: 5   DYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEA--EKQMLVSEVNLLRELKH 62

Query: 684 RNIVKFYGFCSHAQHS--FLVYEFLERGSLAAIL 715
            NIV++Y       ++  ++V E+ E G LA+++
Sbjct: 63  PNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVI 96

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.2 bits (197), Expect = 3e-17
 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 6/87 (6%)

Query: 632 IGNGGHGSVYRAELP---SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVK 688
           +G+G  G+V +         + VAVK   +    +  A + E L E   + ++ +  IV+
Sbjct: 15  LGSGNFGTVKKGYYQMKKVVKTVAVKILKNEA--NDPALKDELLAEANVMQQLDNPYIVR 72

Query: 689 FYGFCSHAQHSFLVYEFLERGSLAAIL 715
             G C   +   LV E  E G L   L
Sbjct: 73  MIGICEA-ESWMLVMEMAELGPLNKYL 98

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.2 bits (195), Expect = 5e-17
 Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 2/93 (2%)

Query: 624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR 682
            DF+    +G G  G+VY A    S  ++A+K    +        + +   EV+  + +R
Sbjct: 6   EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKA-GVEHQLRREVEIQSHLR 64

Query: 683 HRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
           H NI++ YG+   A   +L+ E+   G++   L
Sbjct: 65  HPNILRLYGYFHDATRVYLILEYAPLGTVYREL 97

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.8 bits (196), Expect = 6e-17
 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 7/87 (8%)

Query: 632 IGNGGHGSVYRAEL---PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVK 688
           +G G  GSV +           VA+K         + AD +E + E Q + ++ +  IV+
Sbjct: 17  LGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGT---EKADTEEMMREAQIMHQLDNPYIVR 73

Query: 689 FYGFCSHAQHSFLVYEFLERGSLAAIL 715
             G C  A+   LV E    G L   L
Sbjct: 74  LIGVC-QAEALMLVMEMAGGGPLHKFL 99

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 79.9 bits (196), Expect = 6e-17
 Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 11/109 (10%)

Query: 613 KLVYDEIVRETNDFDAEYCIGNGGHGSVYRAELP------SGEVVAVKKFHSSIPCDQIA 666
           KL+  E  R  N+ +    IG G  G V++A  P         +VAVK        D   
Sbjct: 4   KLLSLEYPR--NNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADM-- 59

Query: 667 DQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
            Q +F  E   + E  + NIVK  G C+  +   L++E++  G L   L
Sbjct: 60  -QADFQREAALMAEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFL 107

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.9 bits (196), Expect = 6e-17
 Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 15/116 (12%)

Query: 610 FEGKLVYD----EIVRETNDFDAEYCIGNGGHGSVYRAEL------PSGEVVAVKKFHSS 659
           F    VY     E+ RE         +G G  G VY               VA+K  + +
Sbjct: 4   FSAADVYVPDEWEVARE--KITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEA 61

Query: 660 IPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
                + ++ EFL E   + E    ++V+  G  S  Q + ++ E + RG L + L
Sbjct: 62  ---ASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYL 114

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.8 bits (196), Expect = 8e-17
 Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 15/113 (13%)

Query: 613 KLVYD---EIVRETNDFDAEYCIGNGGHGSVYRAELPS------GEVVAVKKFHSSIPCD 663
           +  YD   E  RE  + +    +G+G  G V  A             VAVK         
Sbjct: 25  EYEYDLKWEFPRE--NLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEK---A 79

Query: 664 QIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
             ++++  ++E++ +T++  H NIV   G C+ +   +L++E+   G L   L
Sbjct: 80  DSSEREALMSELKMMTQLGSHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYL 132

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.0 bits (194), Expect = 1e-16
 Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 3/83 (3%)

Query: 632 IGNGGHGSVYRA-ELPSGEVVAVKKFH--SSIPCDQIADQKEFLTEVQALTEIRHRNIVK 688
           +G+G    V +  E  +G   A K      +    +   +++   EV  L EI+H N++ 
Sbjct: 18  LGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVIT 77

Query: 689 FYGFCSHAQHSFLVYEFLERGSL 711
            +    +     L+ E +  G L
Sbjct: 78  LHEVYENKTDVILILELVAGGEL 100

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.5 bits (190), Expect = 2e-16
 Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 10/98 (10%)

Query: 618 EIVRETNDFDAEYCIGNGGHGSVYRAELPS----GEVVAVKKFHSSIPCDQIADQKEFLT 673
           EI RE    +   CIG G  G V++    S       VA+K       C   + +++FL 
Sbjct: 3   EIQRE--RIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCK---NCTSDSVREKFLQ 57

Query: 674 EVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
           E   + +  H +IVK  G  +     +++ E    G L
Sbjct: 58  EALTMRQFDHPHIVKLIGVITE-NPVWIIMELCTLGEL 94

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.7 bits (191), Expect = 2e-16
 Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 4/93 (4%)

Query: 624 NDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR 682
            D+D    +G G +G V  A    + E VAVK          +   +    E+     + 
Sbjct: 5   EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMK---RAVDCPENIKKEICINKMLN 61

Query: 683 HRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
           H N+VKFYG        +L  E+   G L   +
Sbjct: 62  HENVVKFYGHRREGNIQYLFLEYCSGGELFDRI 94

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.5 bits (190), Expect = 3e-16
 Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 6/92 (6%)

Query: 624 NDFDAEYCIGNGGHGSVYRAELPS----GEVVAVKKFHSSIPCDQIADQKEFLTEVQALT 679
            D      +G+G  G V R E  +       VAVK     +         +F+ EV A+ 
Sbjct: 8   KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQP-EAMDDFIREVNAMH 66

Query: 680 EIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
            + HRN+++ YG         +V E    GSL
Sbjct: 67  SLDHRNLIRLYGVVLTPPM-KMVTELAPLGSL 97

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.5 bits (190), Expect = 4e-16
 Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 7/96 (7%)

Query: 624 NDFDAEYCIGNGGHGSVYRAELPSG---EVVAVKKFHSSIPCDQIADQKEFLTEVQALTE 680
           ND   +  IG G  G V +A +         A+K+       D   D ++F  E++ L +
Sbjct: 10  NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKD---DHRDFAGELEVLCK 66

Query: 681 I-RHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
           +  H NI+   G C H  + +L  E+   G+L   L
Sbjct: 67  LGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFL 102

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.4 bits (190), Expect = 5e-16
 Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 6/85 (7%)

Query: 632 IGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
           +G G  G V+R  E  S +    K         +  DQ     E+  L   RHRNI+  +
Sbjct: 13  LGRGEFGIVHRCVETSSKKTYMAKFVKV-----KGTDQVLVKKEISILNIARHRNILHLH 67

Query: 691 GFCSHAQHSFLVYEFLERGSLAAIL 715
                 +   +++EF+    +   +
Sbjct: 68  ESFESMEELVMIFEFISGLDIFERI 92

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 76.5 bits (187), Expect = 7e-16
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 2/85 (2%)

Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG 691
           IG G +G VY+A+   GE  A+KK       + I      + E+  L E++H NIVK Y 
Sbjct: 10  IGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGI--PSTTIREISILKELKHSNIVKLYD 67

Query: 692 FCSHAQHSFLVYEFLERGSLAAILS 716
                +   LV+E L++     +  
Sbjct: 68  VIHTKKRLVLVFEHLDQDLKKLLDV 92

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.9 bits (183), Expect = 3e-15
 Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 10/90 (11%)

Query: 631 CIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
            IG G  G V+R +   GE VAVK F S     +         E+     +RH NI+ F 
Sbjct: 10  SIGKGRFGEVWRGKW-RGEEVAVKIFSS-----REERSWFREAEIYQTVMLRHENILGFI 63

Query: 691 GFCSHAQHS----FLVYEFLERGSLAAILS 716
              +    +    +LV ++ E GSL   L+
Sbjct: 64  AADNKDNGTWTQLWLVSDYHEHGSLFDYLN 93

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.8 bits (183), Expect = 3e-15
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 8/85 (9%)

Query: 632 IGNGGHGSVYRAELP----SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIV 687
           IG G  G VY   L          AVK  +       I +  +FLTE   + +  H N++
Sbjct: 35  IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRI---TDIGEVSQFLTEGIIMKDFSHPNVL 91

Query: 688 KFYGFCSHAQHS-FLVYEFLERGSL 711
              G C  ++ S  +V  +++ G L
Sbjct: 92  SLLGICLRSEGSPLVVLPYMKHGDL 116

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.5 bits (182), Expect = 3e-15
 Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 10/99 (10%)

Query: 617 DEIVRETNDFDAEYCIGNGGHGSVYRAELPSGE-----VVAVKKFHSSIPCDQIADQKEF 671
            EI    +    +  IG G  G VY+  L +        VA+K   +     Q   + +F
Sbjct: 2   TEI--HPSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQ---RVDF 56

Query: 672 LTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGS 710
           L E   + +  H NI++  G  S  +   ++ E++E G+
Sbjct: 57  LGEAGIMGQFSHHNIIRLEGVISKYKPMMIITEYMENGA 95

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 74.7 bits (183), Expect = 3e-15
 Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 2/85 (2%)

Query: 624 NDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR 682
            DF     +G G  G V+      +G   A+K     I   ++   +    E   L+ + 
Sbjct: 4   QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEI-VVRLKQVEHTNDERLMLSIVT 62

Query: 683 HRNIVKFYGFCSHAQHSFLVYEFLE 707
           H  I++ +G    AQ  F++ +++E
Sbjct: 63  HPFIIRMWGTFQDAQQIFMIMDYIE 87

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 74.8 bits (183), Expect = 6e-15
 Identities = 19/96 (19%), Positives = 31/96 (32%), Gaps = 3/96 (3%)

Query: 624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQ--KEFLTEVQALTE 680
           NDF     IG GG G VY      +G++ A+K         +  +         +  ++ 
Sbjct: 4   NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVST 63

Query: 681 IRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAILS 716
                IV              + + +  G L   LS
Sbjct: 64  GDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLS 99

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.7 bits (180), Expect = 7e-15
 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 2/82 (2%)

Query: 632 IGNGGHGSVYRAE-LPSGEVVAVKKFH-SSIPCDQIADQKEFLTEVQALTEIRHRNIVKF 689
           +G G   +VY+A    + ++VA+KK         +    +  L E++ L E+ H NI+  
Sbjct: 6   LGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGL 65

Query: 690 YGFCSHAQHSFLVYEFLERGSL 711
                H  +  LV++F+E    
Sbjct: 66  LDAFGHKSNISLVFDFMETDLE 87

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.7 bits (178), Expect = 9e-15
 Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 7/89 (7%)

Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
           IG G   +VY+     +   VA  +           +++ F  E + L  ++H NIV+FY
Sbjct: 17  IGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKS--ERQRFKEEAEMLKGLQHPNIVRFY 74

Query: 691 GFCSHA----QHSFLVYEFLERGSLAAIL 715
                     +   LV E +  G+L   L
Sbjct: 75  DSWESTVKGKKCIVLVTELMTSGTLKTYL 103

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.0 bits (178), Expect = 1e-14
 Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 14/107 (13%)

Query: 618 EIVRETNDFDAEYCIGNGGHGSVYRAELPS--------GEVVAVKKFHSSIPCDQIADQK 669
           E+ R+         +G G  G V  AE              VAVK   S        D  
Sbjct: 9   ELPRD--RLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEK---DLS 63

Query: 670 EFLTEVQALTEI-RHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
           + ++E++ +  I +H+NI+   G C+     +++ E+  +G+L   L
Sbjct: 64  DLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYL 110

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.8 bits (178), Expect = 2e-14
 Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 3/94 (3%)

Query: 624 NDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALT-EI 681
            DF     +G G  G V+ AE   + +  A+K     +      D +  + E + L+   
Sbjct: 2   EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMD-DDVECTMVEKRVLSLAW 60

Query: 682 RHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
            H  +   +      ++ F V E+L  G L   +
Sbjct: 61  EHPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHI 94

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 71.6 bits (175), Expect = 2e-14
 Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 7/99 (7%)

Query: 625 DFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKE-----FLTEVQAL 678
           +++ +  +G G    V R    P+ +  AVK    +      A++ +      L EV  L
Sbjct: 4   NYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDIL 63

Query: 679 TEIR-HRNIVKFYGFCSHAQHSFLVYEFLERGSLAAILS 716
            ++  H NI++           FLV++ +++G L   L+
Sbjct: 64  RKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLT 102

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.7 bits (172), Expect = 7e-14
 Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 3/88 (3%)

Query: 625 DFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRH 683
           +F     IG G +G VY+A    +GEVVA+KK       + +      + E+  L E+ H
Sbjct: 3   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGV--PSTAIREISLLKELNH 60

Query: 684 RNIVKFYGFCSHAQHSFLVYEFLERGSL 711
            NIVK           +LV+EFL +   
Sbjct: 61  PNIVKLLDVIHTENKLYLVFEFLHQDLK 88

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.8 bits (170), Expect = 1e-13
 Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 10/99 (10%)

Query: 618 EIVRETNDFDAEYCIGNGGHGSVYRAE-LPSGEV----VAVKKFHSSIPCDQIADQKEFL 672
            I++ET +F     +G+G  G+VY+   +P GE     VA+K+   +         KE L
Sbjct: 4   RILKET-EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREA---TSPKANKEIL 59

Query: 673 TEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
            E   +  + + ++ +  G C  +    L+ + +  G L
Sbjct: 60  DEAYVMASVDNPHVCRLLGICLTSTV-QLITQLMPFGCL 97

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.2 bits (171), Expect = 2e-13
 Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 13/101 (12%)

Query: 618 EIVRETNDFDAEY----CIGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFL 672
           E+ +   +  A Y     +G+G +G+V  A +  +G  VA+KK +     +     K   
Sbjct: 8   EVTKTAWEVRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSEL--FAKRAY 65

Query: 673 TEVQALTEIRHRNIVKFYGFCSHAQHS------FLVYEFLE 707
            E++ L  +RH N++      +  +        +LV  F+ 
Sbjct: 66  RELRLLKHMRHENVIGLLDVFTPDETLDDFTDFYLVMPFMG 106

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.9 bits (170), Expect = 2e-13
 Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 4/76 (5%)

Query: 632 IGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
           IG G +G V  A +  +   VA+KK     P +     +  L E++ L   RH NI+   
Sbjct: 16  IGEGAYGMVCSAYDNVNKVRVAIKKIS---PFEHQTYCQRTLREIKILLRFRHENIIGIN 72

Query: 691 GFCSHAQHSFLVYEFL 706
                     +   +L
Sbjct: 73  DIIRAPTIEQMKDVYL 88

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.4 bits (169), Expect = 3e-13
 Identities = 22/94 (23%), Positives = 32/94 (34%), Gaps = 2/94 (2%)

Query: 624 NDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR 682
           NDFD    +G G  G V       +G   A+K     +   +  +    +TE + L   R
Sbjct: 5   NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAK-DEVAHTVTESRVLQNTR 63

Query: 683 HRNIVKFYGFCSHAQHSFLVYEFLERGSLAAILS 716
           H  +               V E+   G L   LS
Sbjct: 64  HPFLTALKYAFQTHDRLCFVMEYANGGELFFHLS 97

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.7 bits (167), Expect = 5e-13
 Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 15/101 (14%)

Query: 622 ETNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTE 680
           +   +     IGNG  G VY+A+L  SGE+VA+KK           D++    E+Q + +
Sbjct: 18  QEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQ--------DKRFKNRELQIMRK 69

Query: 681 IRHRNIVKFYGFCSHA------QHSFLVYEFLERGSLAAIL 715
           + H NIV+   F   +       +  LV +++         
Sbjct: 70  LDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVAR 110

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.9 bits (162), Expect = 1e-12
 Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 3/81 (3%)

Query: 632 IGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
           IG G +G+V++A+   + E+VA+K+       D        L E+  L E++H+NIV+ +
Sbjct: 10  IGEGTYGTVFKAKNRETHEIVALKRVRLDD--DDEGVPSSALREICLLKELKHKNIVRLH 67

Query: 691 GFCSHAQHSFLVYEFLERGSL 711
                 +   LV+EF ++   
Sbjct: 68  DVLHSDKKLTLVFEFCDQDLK 88

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.2 bits (163), Expect = 1e-12
 Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 5/98 (5%)

Query: 624 NDFDAEYCIGNGGHGSVYRAEL----PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALT 679
            +F+    +G G +G V+         +G++ A+K    +    +    +   TE Q L 
Sbjct: 24  ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLE 83

Query: 680 EIRHR-NIVKFYGFCSHAQHSFLVYEFLERGSLAAILS 716
            IR    +V  +          L+ +++  G L   LS
Sbjct: 84  HIRQSPFLVTLHYAFQTETKLHLILDYINGGELFTHLS 121

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (162), Expect = 1e-12
 Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 11/101 (10%)

Query: 620 VRETNDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQAL 678
             E + ++    IG G  G V++A    +G+ VA+KK       ++       L E++ L
Sbjct: 6   CDEVSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLME--NEKEGFPITALREIKIL 63

Query: 679 TEIRHRNIVKFYGFCSHAQ--------HSFLVYEFLERGSL 711
             ++H N+V     C              +LV++F E    
Sbjct: 64  QLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLA 104

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.3 bits (161), Expect = 1e-12
 Identities = 16/85 (18%), Positives = 30/85 (35%), Gaps = 5/85 (5%)

Query: 632 IGNGGHGSVYRA-ELPSGEVVAVKKFHSS--IPCDQIADQKEFLTEVQALTEIR--HRNI 686
           +G+GG GSVY    +     VA+K           ++ +      EV  L ++      +
Sbjct: 12  LGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGV 71

Query: 687 VKFYGFCSHAQHSFLVYEFLERGSL 711
           ++   +        L+ E  E    
Sbjct: 72  IRLLDWFERPDSFVLILERPEPVQD 96

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.1 bits (160), Expect = 4e-12
 Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 3/77 (3%)

Query: 623 TNDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI 681
              +     +G+G +GSV  A    +G  VAVKK         I   K    E++ L  +
Sbjct: 17  PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF--QSIIHAKRTYRELRLLKHM 74

Query: 682 RHRNIVKFYGFCSHAQH 698
           +H N++      + A+ 
Sbjct: 75  KHENVIGLLDVFTPARS 91

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 65.6 bits (159), Expect = 4e-12
 Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 11/96 (11%)

Query: 624 NDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR 682
           +D+     +G G +  V+ A  + + E V VK             +K+   E++ L  +R
Sbjct: 35  DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV-------KKKKIKREIKILENLR 87

Query: 683 -HRNIVKFYGFCSHAQHS--FLVYEFLERGSLAAIL 715
              NI+               LV+E +       + 
Sbjct: 88  GGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLY 123

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 64.9 bits (157), Expect = 5e-12
 Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 7/93 (7%)

Query: 620 VRETNDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQAL 678
           +R  N +     IG+G  G +Y    + +GE VA+K               +   E +  
Sbjct: 3   LRVGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVK------TKHPQLHIESKIY 56

Query: 679 TEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
             ++    +    +C       ++   L   SL
Sbjct: 57  KMMQGGVGIPTIRWCGAEGDYNVMVMELLGPSL 89

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.1 bits (158), Expect = 7e-12
 Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 15/90 (16%)

Query: 632 IGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKF 689
           +G G +G V +     + E  A+K            D  +   EV+      +  +IV+ 
Sbjct: 20  LGLGINGKVLQIFNKRTQEKFALKMLQ---------DCPKARREVELHWRASQCPHIVRI 70

Query: 690 YGFCSHA----QHSFLVYEFLERGSLAAIL 715
                +     +   +V E L+ G L + +
Sbjct: 71  VDVYENLYAGRKCLLIVMECLDGGELFSRI 100

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.4 bits (153), Expect = 2e-11
 Identities = 22/107 (20%), Positives = 35/107 (32%), Gaps = 9/107 (8%)

Query: 615 VYDEIVRETNDFDAEYCIGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLT 673
           V D        +     IG+G  G V  A +      VA+KK             K    
Sbjct: 8   VGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQT--HAKRAYR 65

Query: 674 EVQALTEIRHRNIVKFYGFCSH------AQHSFLVYEFLERGSLAAI 714
           E+  +  + H+NI+      +        Q  +LV E ++      I
Sbjct: 66  ELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVI 112

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.9 bits (152), Expect = 4e-11
 Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 2/93 (2%)

Query: 624 NDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR 682
           + FD    +G G  G V   +   SG   A+K         ++   +  L E + L  + 
Sbjct: 41  DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQ-KVVKLKQIEHTLNEKRILQAVN 99

Query: 683 HRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
              +VK         + ++V E++  G + + L
Sbjct: 100 FPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHL 132

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.0 bits (149), Expect = 4e-11
 Identities = 49/205 (23%), Positives = 75/205 (36%), Gaps = 8/205 (3%)

Query: 143 EVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELD 202
           EV +++S  E+     +L  +LPP L    +   L+++ N L    L  +     L +L+
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 203 LS----FLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNIC 258
           L           G L  L +L L  N L            LT L +S N  T      + 
Sbjct: 62  LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121

Query: 259 RGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSR 318
             G L+   +  N  +   P  L     L ++ L  NNLT   +  L    NL  + L  
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181

Query: 319 NNFYGEISSNWGKCPKLGTLNVSMN 343
           N+ Y  I   +     L    +  N
Sbjct: 182 NSLY-TIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (132), Expect = 5e-09
 Identities = 35/187 (18%), Positives = 57/187 (30%), Gaps = 7/187 (3%)

Query: 139 SIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSG----SILTNIGN 194
           ++PP++        L L  N L       L   + + +L ++   L+       L  +G 
Sbjct: 24  ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGT 81

Query: 195 LKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLP 254
           L        S   L              +   S  +    G   L  L L GN      P
Sbjct: 82  LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141

Query: 255 HNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFI 314
             +     LE   ++ N+        L    +L  + L  N+L   I +       L F 
Sbjct: 142 GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFA 200

Query: 315 DLSRNNF 321
            L  N +
Sbjct: 201 FLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 9e-08
 Identities = 46/190 (24%), Positives = 65/190 (34%), Gaps = 6/190 (3%)

Query: 276 TIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKL 335
            +P  L        + L+ N L       L  Y  LT ++L R           G  P L
Sbjct: 24  ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVL 79

Query: 336 GTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTG 395
           GTL++S N +           +    LD+S N +       L  L  L +L L+GN+L  
Sbjct: 80  GTLDLSHNQLQSLPLLGQTLPAL-TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138

Query: 396 RLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQL 455
             P  +    +LE L  + N         L  L  L  L L  N     +PK       L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL 197

Query: 456 SELDASHNLF 465
                  N +
Sbjct: 198 PFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (118), Expect = 3e-07
 Identities = 33/209 (15%), Positives = 59/209 (28%), Gaps = 11/209 (5%)

Query: 46  SCNDAGRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYI 105
             +       ++     L+    D           L LS N  +    + +   T+L+ +
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPPDLP----KDTTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 106 SLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLP 165
           +LD  +L+         L  L  L    N+L           +       ++   +  L 
Sbjct: 61  NLDRAELTKLQVDGT--LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG 118

Query: 166 PFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFEL-----DLSFLPLSVGNLTNLKSLG 220
              G           N   +          K                  +  L NL +L 
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178

Query: 221 LMDNHLSGSIPPSFGNSMLTWLTLSGNHF 249
           L +N L       FG+ +L +  L GN +
Sbjct: 179 LQENSLYTIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 6e-07
 Identities = 48/235 (20%), Positives = 75/235 (31%), Gaps = 31/235 (13%)

Query: 280 SLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLN 339
            +    S + V  +  NLT   +    L  + T + LS N                    
Sbjct: 5   EVSKVASHLEVNCDKRNLT---ALPPDLPKDTTILHLSENL------------------- 42

Query: 340 VSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPT 399
                +       +   ++L  L+L          +  G L  L  L L  NQL      
Sbjct: 43  -----LYTFSLATLMPYTRLTQLNLD--RAELTKLQVDGTLPVLGTLDLSHNQLQSLPLL 95

Query: 400 EIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELD 459
                      D S N+  +    +L  L +L  L L  N+     P  L    +L +L 
Sbjct: 96  GQTLPALTVL-DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154

Query: 460 ASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQ 514
            ++N         +  L++L+ L L  N+L   IP  F G H L    +  N   
Sbjct: 155 LANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (112), Expect = 2e-06
 Identities = 40/208 (19%), Positives = 66/208 (31%), Gaps = 24/208 (11%)

Query: 352 EIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLD 411
           E+  ++    ++    ++   +P +L K    T L L  N L       +     L  L+
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 412 FSANKFNNSVPESLGNLLKLHYLGLSNNQFVLE---------------------LPKELE 450
               +      +    +L    L  +  Q +                           L 
Sbjct: 62  LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121

Query: 451 KLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISD 510
            L +L EL    N      P  +     LEKL+L++NNL+ L      G+  L  + + +
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181

Query: 511 NQLQGPVPNSTAFRNAPVEALEGNKELC 538
           N L             P   L GN  LC
Sbjct: 182 NSLYTIPKGFFGSHLLPFAFLHGNPWLC 209

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 25/136 (18%), Positives = 49/136 (36%), Gaps = 7/136 (5%)

Query: 66  TLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTH 125
           +L   +     +L  L L  N      P  +    KL  +SL +N L+      +  L +
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN 173

Query: 126 LKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGS-----LPPFLGNLSNIVRLYIN 180
           L  L  Q N    +IP        +   FL+ N    +        +L + +  V ++  
Sbjct: 174 LDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENVYVWKQ 232

Query: 181 NNSLSGSILTNIGNLK 196
              +     +N+ +++
Sbjct: 233 GVDVKAMT-SNVASVQ 247

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.3 bits (145), Expect = 2e-10
 Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 13/106 (12%)

Query: 618 EIVRETNDFDAEYCIGNGGHGSVYRA------ELPSGEVVAVKKFHSSIPCDQIADQKEF 671
           E  R+         +G G  G V  A      +  +   VAVK           ++ +  
Sbjct: 9   EFPRD--RLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEG---ATHSEHRAL 63

Query: 672 LTEVQALTEIRHR-NIVKFYGFCSHAQHS-FLVYEFLERGSLAAIL 715
           ++E++ L  I H  N+V   G C+       ++ EF + G+L+  L
Sbjct: 64  MSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYL 109

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (143), Expect = 3e-10
 Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 7/91 (7%)

Query: 621 RETNDFDAEYCIGNGGHGSVYRAE--LPSGEVVAVKKFHSSIPCDQIADQKEFLTEV--- 675
           R    ++    IG G +G V++A      G  VA+K+        +       + EV   
Sbjct: 4   RADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQT--GEEGMPLSTIREVAVL 61

Query: 676 QALTEIRHRNIVKFYGFCSHAQHSFLVYEFL 706
           + L    H N+V+ +  C+ ++        L
Sbjct: 62  RHLETFEHPNVVRLFDVCTVSRTDRETKLTL 92

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 58.7 bits (141), Expect = 6e-10
 Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 8/80 (10%)

Query: 632 IGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRN-IVKF 689
           IG G  G ++    L + + VA+K           +D  +   E +    +     I   
Sbjct: 13  IGEGSFGVIFEGTNLLNNQQVAIKFEPRR------SDAPQLRDEYRTYKLLAGCTGIPNV 66

Query: 690 YGFCSHAQHSFLVYEFLERG 709
           Y F     H+ LV + L   
Sbjct: 67  YYFGQEGLHNVLVIDLLGPS 86

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 57.9 bits (138), Expect = 2e-09
 Identities = 54/331 (16%), Positives = 84/331 (25%), Gaps = 20/331 (6%)

Query: 77  QLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNEL 136
           Q   L+L+  G   ++P    +L  L       N L+ ++P     L  L V +     L
Sbjct: 39  QAHELELNNLGL-SSLPELPPHLESLV---ASCNSLT-ELPELPQSLKSLLVDNNNLKAL 93

Query: 137 DGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLK 196
               P     L  +         L          + ++    +         L  I    
Sbjct: 94  SDLPP----LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGN 149

Query: 197 FLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHN 256
              E       L         +  L           S          L       +L   
Sbjct: 150 NQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTI 209

Query: 257 ICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDL 316
                LL+         +                +                   L     
Sbjct: 210 YADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIF--SGLSELPPNLY 267

Query: 317 SRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKE 376
             N    EI S     P L  LNVS N +   +P        L+ L  S NH+  E+P+ 
Sbjct: 268 YLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHL-AEVPEL 322

Query: 377 LGKLNSLTKLILRGNQLTGRLPTEIGSLIEL 407
                +L +L +  N L    P    S+ +L
Sbjct: 323 PQ---NLKQLHVEYNPLRE-FPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 51.0 bits (120), Expect = 3e-07
 Identities = 55/327 (16%), Positives = 91/327 (27%), Gaps = 33/327 (10%)

Query: 122 LLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLS-------NI 174
           L      L      L  S+P     L   E L    N L   LP    +L        N+
Sbjct: 36  LDRQAHELELNNLGL-SSLPELPPHL---ESLVASCNSLT-ELPELPQSLKSLLVDNNNL 90

Query: 175 VRLYINNNSLSGSILTNIGNLKFLFELDLSF---LPLSVGNLTNLKSLGLMDNHLSGSIP 231
             L      L    ++N    K     + SF   + +   +L  L  L      ++    
Sbjct: 91  KALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNN 150

Query: 232 PSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVR 291
                  L  L      +             L    +   +        L+N   L  + 
Sbjct: 151 QLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIY 210

Query: 292 LNGNNLTGNISEALGLYPNLTFIDL--------SRNNFYGEISSNWGKCPKLGTLNVSMN 343
            + N L         L       +             F     + +    +L      +N
Sbjct: 211 ADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLN 270

Query: 344 NITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGS 403
             +  I         L+ L++S N ++ E+P        L +LI   N L   +P    +
Sbjct: 271 ASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLA-EVPELPQN 325

Query: 404 LIELEYLDFSANKFNN--SVPESLGNL 428
              L+ L    N       +PES+ +L
Sbjct: 326 ---LKQLHVEYNPLREFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.8 bits (117), Expect = 6e-07
 Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 9/94 (9%)

Query: 412 FSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPF 471
           +  N  +N +         L  L +SNN+ + ELP    +L     L AS N    E+P 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHLA-EVP- 320

Query: 472 QICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSI 505
                ++L++L++ +N L    P+  E +  L +
Sbjct: 321 --ELPQNLKQLHVEYNPLREF-PDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 45.6 bits (106), Expect = 1e-05
 Identities = 49/334 (14%), Positives = 90/334 (26%), Gaps = 27/334 (8%)

Query: 53  VTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQL 112
              + L N GLS +L +      P L  L  S N     +P    +L     + +D+N L
Sbjct: 40  AHELELNNLGLS-SLPE----LPPHLESLVASCNS-LTELPELPQSLK---SLLVDNNNL 90

Query: 113 SGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLS 172
                    L           +       PE+   S ++ + + +N L            
Sbjct: 91  KALSDLPPLLEYL------GVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEF 144

Query: 173 NIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPP 232
                           L  +  +            L +   + +    +++        P
Sbjct: 145 IAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLP 204

Query: 233 S---FGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIR 289
                        TL     +    +           +     F           + L  
Sbjct: 205 FLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPP 264

Query: 290 VRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGI 349
                N  +  I     L P+L  +++S N     +       P+L  L  S N++   +
Sbjct: 265 NLYYLNASSNEIRSLCDLPPSLEELNVSNNK----LIELPALPPRLERLIASFNHLA-EV 319

Query: 350 PREIGNMSQLQALDLSLNHIVGEIPKELGKLNSL 383
           P    N   L+ L +  N +  E P     +  L
Sbjct: 320 PELPQN---LKQLHVEYNPLR-EFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.4 bits (103), Expect = 3e-05
 Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 13/92 (14%)

Query: 131 FQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILT 190
           +  N     I        S+EEL + +N L   LP     L    RL  + N L+  +  
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLE---RLIASFNHLA-EVPE 321

Query: 191 NIGNLKFLFELDLSF-----LPLSVGNLTNLK 217
              NLK   +L + +      P    ++ +L+
Sbjct: 322 LPQNLK---QLHVEYNPLREFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.1 bits (97), Expect = 2e-04
 Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 8/80 (10%)

Query: 436 LSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPN 495
              N    E+    +    L EL+ S+N    E+P        LE+L  S N+L+ +   
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELP---ALPPRLERLIASFNHLAEVP-- 320

Query: 496 CFEGMHGLSIIDISDNQLQG 515
             E    L  + +  N L+ 
Sbjct: 321 --ELPQNLKQLHVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.6 bits (93), Expect = 5e-04
 Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 11/82 (13%)

Query: 212 NLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSEN 271
              +L+ L + +N L   +P       L  L  S NH    +P        L+   V  N
Sbjct: 282 LPPSLEELNVSNNKLI-ELPALPPR--LERLIASFNHLAE-VPELPQN---LKQLHVEYN 334

Query: 272 HFQGTIPESLRNCTSLIRVRLN 293
             +   P+   +   L   R+N
Sbjct: 335 PLR-EFPDIPESVEDL---RMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.2 bits (92), Expect = 7e-04
 Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 5/56 (8%)

Query: 73  SSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKV 128
           +  P+L  L  S N     +P    NL +L    ++ N L  + P     +  L++
Sbjct: 301 ALPPRLERLIASFN-HLAEVPELPQNLKQL---HVEYNPLR-EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 16/92 (17%), Positives = 29/92 (31%), Gaps = 9/92 (9%)

Query: 269 SENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSN 328
             N     I        SL  + ++ N L   +       P L  +  S N+    ++  
Sbjct: 268 YLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALP---PRLERLIASFNH----LAEV 319

Query: 329 WGKCPKLGTLNVSMNNITGGIPREIGNMSQLQ 360
                 L  L+V  N +    P    ++  L+
Sbjct: 320 PELPQNLKQLHVEYNPLR-EFPDIPESVEDLR 350

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 55.2 bits (132), Expect = 3e-09
 Identities = 10/84 (11%), Positives = 21/84 (25%), Gaps = 10/84 (11%)

Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSS------IPCDQIADQKEFLTEVQALTEIRHRN 685
           +G G   +V+           VK           +   +      F            R 
Sbjct: 8   MGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRA 67

Query: 686 IVKFYGFCSHAQHSF----LVYEF 705
           + K  G      +++    ++ E 
Sbjct: 68  LQKLQGLAVPKVYAWEGNAVLMEL 91

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 55.4 bits (132), Expect = 4e-09
 Identities = 40/227 (17%), Positives = 70/227 (30%), Gaps = 20/227 (8%)

Query: 170 NLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLS----VGNLTNLKSLGLMDNH 225
            L+N +++    ++++ ++     +L  +  L      ++    V  L NL  L L DN 
Sbjct: 17  ALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQ 74

Query: 226 LSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCT 285
           ++        N           +    +        +    + S      T    L N  
Sbjct: 75  IT--DLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 286 SLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNI 345
            L             I+    L        LS  N      +      KL TL    N I
Sbjct: 133 VL-------YLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKI 185

Query: 346 TGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQ 392
           +   P  + ++  L  + L  N I    P  L   ++L  + L  NQ
Sbjct: 186 SDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT-NQ 227

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.5 bits (114), Expect = 7e-07
 Identities = 28/220 (12%), Positives = 60/220 (27%), Gaps = 11/220 (5%)

Query: 146 QLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSF 205
            L++  ++    +++  ++     +L  I  L      ++   +  +  L  L  L+L  
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKD 72

Query: 206 LPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEA 265
             ++        +           +      + L  +       T         G     
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 266 FIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEI 325
            +         I              L+  N   +    L     LT +    N      
Sbjct: 133 VL---YLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD-- 187

Query: 326 SSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLS 365
            S     P L  +++  N I+   P  + N S L  + L+
Sbjct: 188 ISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.8 bits (107), Expect = 5e-06
 Identities = 32/228 (14%), Positives = 66/228 (28%), Gaps = 18/228 (7%)

Query: 283 NCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSM 342
              + I++    +N+T  +++A      +T +                    L  L +  
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQAD--LDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKD 72

Query: 343 NNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIG 402
           N IT   P +         L  +    V  I                 +       + + 
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 403 SLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASH 462
            L        + +           ++       L+           L  L +L+ L A  
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP----------LANLSKLTTLKADD 182

Query: 463 NLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISD 510
           N      P    SL +L +++L +N +S + P        L I+ +++
Sbjct: 183 NKISDISPL--ASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 31/207 (14%), Positives = 55/207 (26%), Gaps = 16/207 (7%)

Query: 280 SLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLN 339
           +  +   +  +   G  +T    E +    NL  ++L  N                  L+
Sbjct: 36  TQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELS 93

Query: 340 VSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPT 399
            +       I       +         +         L  L      I   + L G    
Sbjct: 94  GNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNL 153

Query: 400 EIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELD 459
           +            S      S    L NL KL  L   +N+  +     L  L  L E+ 
Sbjct: 154 QY----------LSIGNAQVSDLTPLANLSKLTTLKADDNK--ISDISPLASLPNLIEVH 201

Query: 460 ASHNLFGGEIPFQICSLKSLEKLNLSH 486
             +N      P    +  +L  + L++
Sbjct: 202 LKNNQISDVSPLA--NTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 4e-04
 Identities = 31/227 (13%), Positives = 63/227 (27%), Gaps = 17/227 (7%)

Query: 212 NLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSEN 271
            L N   +    ++++ ++  +  +  +T L+  G   T      +     L    + +N
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQADLDG-ITTLSAFGTGVTTI--EGVQYLNNLIGLELKDN 73

Query: 272 HFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGK 331
                 P             L            L     +  +   +             
Sbjct: 74  QITDLAPLK----------NLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVT 123

Query: 332 CPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGN 391
                +    +      I              LS+ +        L  L+ LT L    N
Sbjct: 124 PLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDN 183

Query: 392 QLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSN 438
           +++   P  + SL  L  +    N+ ++  P  L N   L  + L+N
Sbjct: 184 KISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.6 bits (127), Expect = 3e-08
 Identities = 39/267 (14%), Positives = 89/267 (33%), Gaps = 16/267 (5%)

Query: 269 SENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGE-ISS 327
           +  +    +   L +   +I  R   + +   ++E       +  +DLS +      +  
Sbjct: 8   TGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEHFSP-FRVQHMDLSNSVIEVSTLHG 65

Query: 328 NWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKE--------LGK 379
              +C KL  L++    ++  I   +   S L  L+LS      E   +        L +
Sbjct: 66  ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 125

Query: 380 LNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNN 439
           LN           +   +     ++ +L    +  N   + +   +     L +L LS++
Sbjct: 126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDS 185

Query: 440 QFV-LELPKELEKLVQLSELDASH-NLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCF 497
             +  +  +E  +L  L  L  S       E   ++  + +L+ L +      G +    
Sbjct: 186 VMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLK 245

Query: 498 EGMHGLSIIDISDNQLQGPVPNSTAFR 524
           E +  L    I+ +        +   +
Sbjct: 246 EALPHL---QINCSHFTTIARPTIGNK 269

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (119), Expect = 2e-07
 Identities = 40/279 (14%), Positives = 78/279 (27%), Gaps = 17/279 (6%)

Query: 80  HLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLS-GKIPAEVGLLTHLKVLSFQFNEL-D 137
            LDL+        P   G L     I+    +    +  AE      ++ +    + +  
Sbjct: 4   TLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEV 60

Query: 138 GSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKF 197
            ++   + Q S ++ L L    L+  +   L   SN+VRL ++  S   S       L  
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS-GFSEFALQTLLSS 119

Query: 198 LFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNI 257
              LD   L            + +     + +     G       +              
Sbjct: 120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 179

Query: 258 CRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNG-NNLTGNISEALGLYPNLTFIDL 316
                    +      +    +       L  + L+   ++       LG  P L  + +
Sbjct: 180 LD-------LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQV 232

Query: 317 SRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGN 355
                 G +       P    L ++ ++ T      IGN
Sbjct: 233 FGIVPDGTLQLLKEALPH---LQINCSHFTTIARPTIGN 268

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 6e-07
 Identities = 46/304 (15%), Positives = 94/304 (30%), Gaps = 49/304 (16%)

Query: 201 LDLS---FLPLSVGNLT--NLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPH 255
           LDL+     P   G L    + +     + +   +   F    +  + LS +        
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEV---- 60

Query: 256 NICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFID 315
                               T+   L  C+ L  + L G  L+  I   L    NL  ++
Sbjct: 61  -------------------STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 101

Query: 316 LSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPK 375
           LS  + + E +             ++++       + +       +  ++  ++ G    
Sbjct: 102 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG---- 157

Query: 376 ELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSAN-KFNNSVPESLGNLLKLHYL 434
                        R N     L T +     L +LD S +    N   +    L  L +L
Sbjct: 158 ------------YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL 205

Query: 435 GLSNNQFVL-ELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLI 493
            LS    ++ E   EL ++  L  L     +  G +       ++L  L ++ ++ + + 
Sbjct: 206 SLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQL---LKEALPHLQINCSHFTTIA 262

Query: 494 PNCF 497
               
Sbjct: 263 RPTI 266

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 40/267 (14%), Positives = 75/267 (28%), Gaps = 16/267 (5%)

Query: 51  GRVTNISLRNTGLSGTLRD---FSFSSFPQLVHLDLSLNGF-FGTIPSQIGNLTKLSYIS 106
           GR+ +  +       +  D       S  ++ H+DLS +     T+   +   +KL  +S
Sbjct: 18  GRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 77

Query: 107 LDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPP 166
           L+  +LS  I   +   ++L  L+            +    S      L  +        
Sbjct: 78  LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK 137

Query: 167 FLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHL 226
            +      V   I   +LSG       +           L     +              
Sbjct: 138 HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS--------DSVMLK 189

Query: 227 SGSIPPSFGNSMLTWLTLSG-NHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCT 285
           +      F  + L  L+LS            +     L+   V      GT+        
Sbjct: 190 NDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALP 249

Query: 286 SLIRVRLNGNNLTGNISEALGLYPNLT 312
            L   ++N ++ T      +G   N  
Sbjct: 250 HL---QINCSHFTTIARPTIGNKKNQE 273

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (126), Expect = 6e-08
 Identities = 13/102 (12%), Positives = 31/102 (30%), Gaps = 5/102 (4%)

Query: 405 IELEYLDFSANKFNNS-VPESLGNLLKLHYLGLSNNQF----VLELPKELEKLVQLSELD 459
           ++++ LD    + +++   E L  L +   + L +         ++   L     L+EL+
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 460 ASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMH 501
              N  G      +          +   +L            
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV 103

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (122), Expect = 2e-07
 Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 10/93 (10%)

Query: 359 LQALDLSLNHIVGEIPKEL-GKLNSLTKLILRGNQLTGRLPTEIGSLIE----LEYLDFS 413
           +Q+LD+    +      EL   L     + L    LT     +I S +     L  L+  
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 414 ANKFNNSVPESLGNLL-----KLHYLGLSNNQF 441
           +N+  +     +   L     K+  L L N   
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (118), Expect = 5e-07
 Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 9/87 (10%)

Query: 355 NMSQLQALDLSLNHIVGE----IPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIE---- 406
             S L+ L L+   +       +   L   +SL +L L  N L      ++   +     
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 407 -LEYLDFSANKFNNSVPESLGNLLKLH 432
            LE L      ++  + + L  L K  
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQALEKDK 453

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (114), Expect = 2e-06
 Identities = 15/83 (18%), Positives = 31/83 (37%), Gaps = 9/83 (10%)

Query: 381 NSLTKLILRGNQLTGRLPTEIGSLIE----LEYLDFSANKFNNSVPESLGNLLK-----L 431
           + L  L L    ++    + + + +     L  LD S N   ++    L   ++     L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 432 HYLGLSNNQFVLELPKELEKLVQ 454
             L L +  +  E+   L+ L +
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (111), Expect = 3e-06
 Identities = 12/82 (14%), Positives = 26/82 (31%), Gaps = 9/82 (10%)

Query: 308 YPNLTFIDLSRNNFYGE----ISSNWGKCPKLGTLNVSMNNITGGIPREIG-----NMSQ 358
              L  + L+  +        +++       L  L++S N +      ++          
Sbjct: 368 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCL 427

Query: 359 LQALDLSLNHIVGEIPKELGKL 380
           L+ L L   +   E+   L  L
Sbjct: 428 LEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (108), Expect = 8e-06
 Identities = 18/80 (22%), Positives = 27/80 (33%), Gaps = 9/80 (11%)

Query: 430 KLHYLGLSNNQF----VLELPKELEKLVQLSELDASHNLFGGEIPFQICS-----LKSLE 480
            L  L L++          L   L     L ELD S+N  G     Q+          LE
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 429

Query: 481 KLNLSHNNLSGLIPNCFEGM 500
           +L L     S  + +  + +
Sbjct: 430 QLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (105), Expect = 2e-05
 Identities = 10/93 (10%), Positives = 26/93 (27%), Gaps = 10/93 (10%)

Query: 310 NLTFIDLSRNNFYGE-ISSNWGKCPKLGTLNVSMNNITG----GIPREIGNMSQLQALDL 364
           ++  +D+          +       +   + +    +T      I   +     L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 365 SLNHIVGEIPKELGKL-----NSLTKLILRGNQ 392
             N +       + +        + KL L+   
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (104), Expect = 2e-05
 Identities = 13/84 (15%), Positives = 31/84 (36%), Gaps = 9/84 (10%)

Query: 332 CPKLGTLNVSMNNITG----GIPREIGNMSQLQALDLSLNHIVGEIPKELGK-----LNS 382
              L  L ++  +++      +   +     L+ LDLS N +      +L +        
Sbjct: 368 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCL 427

Query: 383 LTKLILRGNQLTGRLPTEIGSLIE 406
           L +L+L     +  +   + +L +
Sbjct: 428 LEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 1e-04
 Identities = 9/68 (13%), Positives = 23/68 (33%), Gaps = 5/68 (7%)

Query: 453 VQLSELDASHNLFGGEIPFQICS-LKSLEKLNLSHNNLSG----LIPNCFEGMHGLSIID 507
           + +  LD            ++   L+  + + L    L+      I +       L+ ++
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 508 ISDNQLQG 515
           +  N+L  
Sbjct: 62  LRSNELGD 69

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 3e-04
 Identities = 20/93 (21%), Positives = 31/93 (33%), Gaps = 15/93 (16%)

Query: 407 LEYLDFSANKFNNSVPESLGNLLK----LHYLGLSNNQFVLELPKELEKLVQ-----LSE 457
           L  L  +    ++S   SL   L     L  L LSNN        +L + V+     L +
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 430

Query: 458 LDASHNLFGGEIPFQICSLKSLEKLNLSHNNLS 490
           L      +  E+         L+ L     +L 
Sbjct: 431 LVLYDIYWSEEME------DRLQALEKDKPSLR 457

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 6e-04
 Identities = 16/117 (13%), Positives = 34/117 (29%), Gaps = 21/117 (17%)

Query: 149 SIEELFLYSNHLNGS-LPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLP 207
            I+ L +    L+ +     L  L     + +++  L+ +   +I +             
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISS------------- 49

Query: 208 LSVGNLTNLKSLGLMDNHLSGSIPPSFG------NSMLTWLTLSGNHFTGYLPHNIC 258
            ++     L  L L  N L               +  +  L+L     TG     + 
Sbjct: 50  -ALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 105

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 9e-04
 Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 10/92 (10%)

Query: 263 LEAFIVSENHFQGT-IPESLRNCTSLIRVRLNGNNLTG----NISEALGLYPNLTFIDLS 317
           +++  +           E L        VRL+   LT     +IS AL + P L  ++L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 318 RNNFYGEISSNWGK-----CPKLGTLNVSMNN 344
            N           +       K+  L++    
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 0.002
 Identities = 15/127 (11%), Positives = 29/127 (22%), Gaps = 27/127 (21%)

Query: 215 NLKSLGLMDNHLSGSIPPSFGNSM--LTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENH 272
           +++SL +    LS +        +     + L     T                      
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARC------------------ 44

Query: 273 FQGTIPESLRNCTSLIRVRLNGNNLTGNISEALG-----LYPNLTFIDLSRNNFYGEISS 327
               I  +LR   +L  + L  N L       +          +  + L      G    
Sbjct: 45  --KDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 102

Query: 328 NWGKCPK 334
                 +
Sbjct: 103 VLSSTLR 109

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.6 bits (122), Expect = 2e-07
 Identities = 11/73 (15%), Positives = 26/73 (35%), Gaps = 6/73 (8%)

Query: 632 IGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
           +G G   +V+ A+ + +   VA+K              +    E++ L  +   +  K  
Sbjct: 21  LGWGHFSTVWLAKDMVNNTHVAMKIVRGDK-----VYTEAAEDEIKLLQRVNDADNTKED 75

Query: 691 GFCSHAQHSFLVY 703
              ++     L +
Sbjct: 76  SMGANHILKLLDH 88

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.2 bits (109), Expect = 9e-07
 Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 6/107 (5%)

Query: 81  LDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSI 140
           L L+      T+   +  L  ++++ L  N+L    P  +  L  L+VL    N      
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDN--ALEN 57

Query: 141 PPEVCQLSSIEELFLYSNHLNG-SLPPFLGNLSNIVRLYINNNSLSG 186
              V  L  ++EL L +N L   +    L +   +V L +  NSL  
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.9 bits (108), Expect = 1e-06
 Identities = 28/117 (23%), Positives = 41/117 (35%), Gaps = 7/117 (5%)

Query: 292 LNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPR 351
           L   +LT  +   L     +T +DLS N       +       L  L  S N +      
Sbjct: 5   LAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALE--NVD 59

Query: 352 EIGNMSQLQALDLSLNHIVG-EIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIEL 407
            + N+ +LQ L L  N +      + L     L  L L+GN L          L E+
Sbjct: 60  GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.9 bits (108), Expect = 1e-06
 Identities = 29/108 (26%), Positives = 43/108 (39%), Gaps = 6/108 (5%)

Query: 386 LILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLEL 445
           L L    LT      +  L+ + +LD S N+   ++P +L  L  L  L    +   LE 
Sbjct: 3   LHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVL--QASDNALEN 57

Query: 446 PKELEKLVQLSELDASHN-LFGGEIPFQICSLKSLEKLNLSHNNLSGL 492
              +  L +L EL   +N L        + S   L  LNL  N+L   
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.1 bits (106), Expect = 2e-06
 Identities = 28/127 (22%), Positives = 47/127 (37%), Gaps = 9/127 (7%)

Query: 360 QALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNN 419
           + L L+   +   +   L +L  +T L L  N+L    P  + +L  LE L    +    
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQA--SDNAL 55

Query: 420 SVPESLGNLLKLHYLGLSNNQFV-LELPKELEKLVQLSELDASHNLF---GGEIPFQICS 475
              + + NL +L  L L NN+       + L    +L  L+   N      G        
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

Query: 476 LKSLEKL 482
           L S+  +
Sbjct: 116 LPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.6 bits (102), Expect = 7e-06
 Identities = 25/108 (23%), Positives = 38/108 (35%), Gaps = 6/108 (5%)

Query: 409 YLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGE 468
            L  +      +V   L  LL + +L LS+N+     P  L  L  L  L AS N     
Sbjct: 2   VLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENV 58

Query: 469 IPFQICSLKSLEKLNLSHNNLSGL-IPNCFEGMHGLSIIDISDNQLQG 515
                     L++L L +N L              L ++++  N L  
Sbjct: 59  DGVANL--PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.2 bits (96), Expect = 4e-05
 Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 8/119 (6%)

Query: 201 LDLSFLPLSV----GNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHN 256
           L L+   L+V      L  +  L L  N L   +PP+        +  + ++    +   
Sbjct: 3   LHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENVDGV 61

Query: 257 ICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLT---GNISEALGLYPNLT 312
                L E  + +    Q    + L +C  L+ + L GN+L    G       + P+++
Sbjct: 62  ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS 120

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 48.3 bits (113), Expect = 2e-06
 Identities = 40/327 (12%), Positives = 90/327 (27%), Gaps = 41/327 (12%)

Query: 125 HLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNG----SLPPFLGNLSNIVRLYIN 180
            LK+ +    +   S+   + +  S++E+ L  N +       L   + +  ++     +
Sbjct: 9   SLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 181 NNSLS----------GSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSI 230
           +                +L  +     L  + LS           L         L    
Sbjct: 68  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 127

Query: 231 PPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPE----------- 279
             + G        ++       +         L + I   N  +    +           
Sbjct: 128 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 187

Query: 280 --SLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGT 337
             +++   + IR     + L   ++    L       +   +     ++      P L  
Sbjct: 188 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 247

Query: 338 LNVSMNNITGGIPREIGNM------SQLQALDLSLNHIVGEIPKEL-----GKLNSLTKL 386
           L ++   ++      + +         LQ L L  N I  +  + L      K+  L  L
Sbjct: 248 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 307

Query: 387 ILRGNQLT--GRLPTEIGSLIELEYLD 411
            L GN+ +    +  EI  +       
Sbjct: 308 ELNGNRFSEEDDVVDEIREVFSTRGRG 334

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.9 bits (86), Expect = 0.004
 Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 8/90 (8%)

Query: 359 LQALDLSLNHI----VGEIPKELGKLNSLTKLILRGNQLTGR----LPTEIGSLIELEYL 410
           ++   L L+ I       +   L + +S+ +++L GN +       L   I S  +LE  
Sbjct: 5   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 64

Query: 411 DFSANKFNNSVPESLGNLLKLHYLGLSNNQ 440
           +FS         E    L  L    L   +
Sbjct: 65  EFSDIFTGRVKDEIPEALRLLLQALLKCPK 94

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.6 bits (85), Expect = 0.004
 Identities = 15/102 (14%), Positives = 29/102 (28%), Gaps = 6/102 (5%)

Query: 42  WYGISCNDAGRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQI----- 96
                      + +  L   G +  +  FS      L  L L  N         +     
Sbjct: 239 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID 298

Query: 97  GNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSF-QFNELD 137
             +  L ++ L+ N+ S +      +          + +ELD
Sbjct: 299 EKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELD 340

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (106), Expect = 5e-06
 Identities = 23/146 (15%), Positives = 44/146 (30%), Gaps = 5/146 (3%)

Query: 396 RLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQL 455
           +L   +    +            +     L        L   ++     L    E + +L
Sbjct: 11  QLKLIMSKRYDGSQQALDLKGLRS--DPDLVAQNIDVVLNRRSSMAAT-LRIIEENIPEL 67

Query: 456 SELDASHN--LFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQL 513
             L+ S+N      ++   +    +L+ LNLS N L             L  + +  N L
Sbjct: 68  LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL 127

Query: 514 QGPVPNSTAFRNAPVEALEGNKELCG 539
                + + + +A  E       L G
Sbjct: 128 SDTFRDQSTYISAIRERFPKLLRLDG 153

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (98), Expect = 4e-05
 Identities = 30/148 (20%), Positives = 57/148 (38%), Gaps = 15/148 (10%)

Query: 278 PESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDL-----SRNNFYGEISSNWGKC 332
           PE +     ++  R +G+    ++   L   P+L   ++      R++    +       
Sbjct: 6   PEQVEQLKLIMSKRYDGSQQALDLKG-LRSDPDLVAQNIDVVLNRRSSMAATLRIIEENI 64

Query: 333 PKLGTLNVSMNNITG--GIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRG 390
           P+L +LN+S N +     +   +     L+ L+LS N +  E   +  K   L +L L G
Sbjct: 65  PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDG 124

Query: 391 NQLTGRLPTE-------IGSLIELEYLD 411
           N L+     +            +L  LD
Sbjct: 125 NSLSDTFRDQSTYISAIRERFPKLLRLD 152

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 8e-04
 Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 3/138 (2%)

Query: 55  NISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSG 114
           + S +   L G   D    +    V L+   +    T+     N+ +L  ++L +N+L  
Sbjct: 21  DGSQQALDLKGLRSDPDLVAQNIDVVLNRRSS-MAATLRIIEENIPELLSLNLSNNRLYR 79

Query: 115 K--IPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLS 172
              + + V    +LK+L+   NEL      +  +   +EEL+L  N L+ +       +S
Sbjct: 80  LDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYIS 139

Query: 173 NIVRLYINNNSLSGSILT 190
            I   +     L G  L 
Sbjct: 140 AIRERFPKLLRLDGHELP 157

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 44.0 bits (102), Expect = 1e-05
 Identities = 39/186 (20%), Positives = 60/186 (32%), Gaps = 9/186 (4%)

Query: 282 RNCT-SLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEI-SSNWGKCPKLGTLN 339
             C      V   G  L         +  + T + L+ N          +G+ P L  L 
Sbjct: 4   AMCHCEGTTVDCTGRGLK---EIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLE 60

Query: 340 VSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPT 399
           +  N +TG  P      S +Q L L  N I     K    L+ L  L L  NQ++  +P 
Sbjct: 61  LKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG 120

Query: 400 EIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELD 459
               L  L  L+ + +   N           L    L+        P ++     +   D
Sbjct: 121 SFEHLNSLTSLNLA-SNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRD---VQIKD 176

Query: 460 ASHNLF 465
             H+ F
Sbjct: 177 LPHSEF 182

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.9 bits (99), Expect = 4e-05
 Identities = 45/186 (24%), Positives = 72/186 (38%), Gaps = 8/186 (4%)

Query: 337 TLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKEL-GKLNSLTKLILRGNQLTG 395
           T++ +   +   IPR+I        L L+ N +       L G+L  L KL L+ NQLTG
Sbjct: 12  TVDCTGRGLKE-IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG 68

Query: 396 RLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQL 455
             P        ++ L    NK      +    L +L  L L +NQ    +P   E L  L
Sbjct: 69  IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSL 128

Query: 456 SELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQG 515
           + L+ + N F           + L K +L+        P     +  + I D+  ++ + 
Sbjct: 129 TSLNLASNPFNCNCHLAWF-AEWLRKKSLNGGAARCGAP---SKVRDVQIKDLPHSEFKC 184

Query: 516 PVPNST 521
              NS 
Sbjct: 185 SSENSE 190

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.8 bits (91), Expect = 4e-04
 Identities = 27/167 (16%), Positives = 45/167 (26%), Gaps = 12/167 (7%)

Query: 139 SIPPEVCQLSSIEELFLYSN-------HLNGSLPPFLGNLSNIVRLYINNNSLSGSILTN 191
            IP ++       EL L  N              P L  L             +    ++
Sbjct: 22  EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79

Query: 192 IGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTG 251
           I  L+                L  LK+L L DN +S  +P SF +          ++   
Sbjct: 80  IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139

Query: 252 YLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLT 298
              H       L    ++    +   P  +R+        L  +   
Sbjct: 140 CNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIK---DLPHSEFK 183

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 4e-05
 Identities = 24/236 (10%), Positives = 50/236 (21%), Gaps = 8/236 (3%)

Query: 282 RNCT-SLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNV 340
           R C  S        + +T        L  N   +              +     L  + +
Sbjct: 4   RICHCSNRVFLCQESKVT---EIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEI 60

Query: 341 SMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLT----GR 396
           S N++   I  ++ +                         N      L  +         
Sbjct: 61  SQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD 120

Query: 397 LPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLS 456
           +         L  +  + N         +G   +   L L+ N                 
Sbjct: 121 VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDE 180

Query: 457 ELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQ 512
              + +N                  L++S   +  L     E +  L      + +
Sbjct: 181 LNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 5e-04
 Identities = 30/236 (12%), Positives = 61/236 (25%), Gaps = 15/236 (6%)

Query: 141 PPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFE 200
              +C  S+        + +   +P  L    N + L      L             L +
Sbjct: 2   HHRICHCSN-RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEK 57

Query: 201 LDLSFLPLSVG---------NLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTG 251
           +++S   +               +   +   +N L  +         L +L +S      
Sbjct: 58  IEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH 117

Query: 252 YLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLN--GNNLTGNISEALGLYP 309
               +           + +N    TI  +     S   V L    N +    + A     
Sbjct: 118 LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQ 177

Query: 310 NLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLS 365
                    NN     +  +        L++S   I       + N+ +L+A    
Sbjct: 178 LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 233

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.002
 Identities = 28/222 (12%), Positives = 58/222 (26%), Gaps = 7/222 (3%)

Query: 200 ELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGN-SMLTWLTLSGNHFTGYLPHNIC 258
           E  ++ +P  +    N   L  +   L      +F     L  + +S N     +  ++ 
Sbjct: 17  ESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVF 74

Query: 259 RGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLT----GNISEALGLYPNLTFI 314
                   I  E                     L  +N       ++ +   L   L  I
Sbjct: 75  SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDI 134

Query: 315 DLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIP 374
             + N    E +S  G   +   L ++ N I              +      N++     
Sbjct: 135 QDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPN 194

Query: 375 KELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANK 416
                 +    L +   ++       + +L +L        K
Sbjct: 195 DVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.002
 Identities = 39/222 (17%), Positives = 60/222 (27%), Gaps = 8/222 (3%)

Query: 229 SIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLI 288
            IP     +    L                  G LE   +S+N     I   + +    +
Sbjct: 22  EIPSDLPRN-AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 80

Query: 289 R--VRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEI--SSNWGKCPKLGTLNVSMNN 344
                   NNL     EA    PNL ++ +S                   L  +  ++N 
Sbjct: 81  HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINI 140

Query: 345 ITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSL 404
            T      +G   +   L L+ N I                 +   N L           
Sbjct: 141 HTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGA 200

Query: 405 IELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELP 446
                LD S  + ++     L NL KL      N +   +LP
Sbjct: 201 SGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLP 239

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 4e-05
 Identities = 27/197 (13%), Positives = 63/197 (31%), Gaps = 17/197 (8%)

Query: 170 NLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLS----VGNLTNLKSLGLMDNH 225
            L+  ++  +   +++ ++  +  +L  +  L    L +     V  L NL  +   +N 
Sbjct: 16  ALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQ 73

Query: 226 LSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCT 285
           L+        N       L  N+    +        L    + +         ++L N  
Sbjct: 74  LTD--ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 131

Query: 286 SLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNI 345
            L             IS+   L    +   L+ ++              L  L++S N +
Sbjct: 132 RLELSS-------NTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKV 184

Query: 346 TGGIPREIGNMSQLQAL 362
           +      +  ++ L++L
Sbjct: 185 SD--ISVLAKLTNLESL 199

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (97), Expect = 7e-05
 Identities = 29/138 (21%), Positives = 41/138 (29%), Gaps = 7/138 (5%)

Query: 280 SLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLN 339
              N      + L G  +   I            ID S N         +    +L TL 
Sbjct: 13  QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR--KLDGFPLLRRLKTLL 69

Query: 340 VSMNNITGGIPREIGNMSQLQALDLSLNHIVG-EIPKELGKLNSLTKLILRG---NQLTG 395
           V+ N I          +  L  L L+ N +V       L  L SLT L +          
Sbjct: 70  VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH 129

Query: 396 RLPTEIGSLIELEYLDFS 413
                I  + ++  LDF 
Sbjct: 130 YRLYVIYKVPQVRVLDFQ 147

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 0.001
 Identities = 24/136 (17%), Positives = 48/136 (35%), Gaps = 13/136 (9%)

Query: 94  SQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEEL 153
           +Q  N  +   + L   ++   I      L     + F  NE+          L  ++ L
Sbjct: 12  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR--KLDGFPLLRRLKTL 68

Query: 154 FLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSG-SILTNIGNLKFLFELDLSFLPLS--- 209
            + +N +          L ++  L + NNSL     L  + +LK L  L +   P++   
Sbjct: 69  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 128

Query: 210 ------VGNLTNLKSL 219
                 +  +  ++ L
Sbjct: 129 HYRLYVIYKVPQVRVL 144

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 0.003
 Identities = 17/101 (16%), Positives = 38/101 (37%), Gaps = 5/101 (4%)

Query: 413 SANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQ 472
           +A     +      N ++   L L   +    +      L Q   +D S N       F 
Sbjct: 4   TAELIEQA--AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFP 60

Query: 473 ICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQL 513
              L+ L+ L +++N +  +     + +  L+ + +++N L
Sbjct: 61  --LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL 99

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 0.003
 Identities = 27/134 (20%), Positives = 46/134 (34%), Gaps = 7/134 (5%)

Query: 332 CPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGN 391
             +   L++    I   I      + Q  A+D S N I          L  L  L++  N
Sbjct: 17  AVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKLDGFP--LLRRLKTLLVNNN 73

Query: 392 QLTGRLPTEIGSLIELEYLDFSANKFNN-SVPESLGNLLKLHYLGLSNNQFVLE---LPK 447
           ++         +L +L  L  + N        + L +L  L YL +  N    +      
Sbjct: 74  RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLY 133

Query: 448 ELEKLVQLSELDAS 461
            + K+ Q+  LD  
Sbjct: 134 VIYKVPQVRVLDFQ 147

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.9 bits (97), Expect = 1e-04
 Identities = 33/225 (14%), Positives = 63/225 (28%), Gaps = 41/225 (18%)

Query: 170 NLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLS----VGNLTNLKSLGLMDNH 225
             +  ++  +   S++ ++  N   L  + ++  +   +     +  L N+  L L  N 
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNK 79

Query: 226 LSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCT 285
           L+        N           +    L          +   +S  H   +    L +  
Sbjct: 80  LTD--IKPLANLKNLGWLFLDENKVKDLSSLKDLK---KLKSLSLEHNGISDINGLVHLP 134

Query: 286 SLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNI 345
            L  + L  N +T                                            +N 
Sbjct: 135 QLESLYLGNNKITDI---------------------------TVLSRLTKLDTLSLEDNQ 167

Query: 346 TGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRG 390
              I   +  +++LQ L LS NHI     + L  L +L  L L  
Sbjct: 168 ISDIV-PLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.5 bits (96), Expect = 1e-04
 Identities = 31/190 (16%), Positives = 69/190 (36%), Gaps = 23/190 (12%)

Query: 338 LNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRL 397
            N+   ++T  + +    ++ +  +  + + I       +  L ++TKL L GN+LT   
Sbjct: 29  DNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIK 84

Query: 398 PTEIGSLIELEYLDFSANKFN---------------NSVPESLGNLLKLHYLGLSNNQFV 442
           P      +   +LD +  K                 ++    +  L+ L  L        
Sbjct: 85  PLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNN 144

Query: 443 LELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHG 502
                 +   +   +  +  +    +I   +  L  L+ L LS N++S L      G+  
Sbjct: 145 KITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL--RALAGLKN 201

Query: 503 LSIIDISDNQ 512
           L ++++  +Q
Sbjct: 202 LDVLELF-SQ 210

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 4e-04
 Identities = 35/205 (17%), Positives = 73/205 (35%), Gaps = 20/205 (9%)

Query: 283 NCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWG--KCPKLGTLNV 340
                I+  L   ++T  +++      ++  I  + ++    I S  G    P +  L +
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQNE--LNSIDQIIANNSD----IKSVQGIQYLPNVTKLFL 75

Query: 341 SMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTE 400
           + N +T    + + N+  L  L L  N +      +           L+   L     ++
Sbjct: 76  NGNKLTD--IKPLANLKNLGWLFLDENKVKDLSSLK-------DLKKLKSLSLEHNGISD 126

Query: 401 IGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDA 460
           I  L+ L  L+      N     ++ + L         +  + ++   L  L +L  L  
Sbjct: 127 INGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYL 185

Query: 461 SHNLFGGEIPFQICSLKSLEKLNLS 485
           S N    ++   +  LK+L+ L L 
Sbjct: 186 SKNHI-SDLR-ALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 9e-04
 Identities = 29/177 (16%), Positives = 61/177 (34%), Gaps = 9/177 (5%)

Query: 71  SFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLS 130
           + +    +  +  + +         I  L  ++ + L+ N+L+   P     L +LK L 
Sbjct: 41  TQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-----LANLKNLG 93

Query: 131 FQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILT 190
           + F + +        +     +     ++    +   +           NN     ++L+
Sbjct: 94  WLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLS 153

Query: 191 NIGNLKFLFELDLSFLPLS-VGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSG 246
            +  L  L   D     +  +  LT L++L L  NH+S  +    G   L  L L  
Sbjct: 154 RLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS-DLRALAGLKNLDVLELFS 209

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 23/147 (15%), Positives = 44/147 (29%), Gaps = 4/147 (2%)

Query: 284 CTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSN-WGKCPKLGTLNVSM 342
                 +R   +    +    L    NLT + +        +         +L  L +  
Sbjct: 7   PHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65

Query: 343 NNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLT-GRLPTEI 401
           + +    P       +L  L+LS N +   +  +  +  SL +L+L GN L        +
Sbjct: 66  SGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCALRWL 124

Query: 402 GSLIELEYLDFSANKFNNSVPESLGNL 428
               E         K        L ++
Sbjct: 125 QRWEEEGLGGVPEQKLQCHGQGPLAHM 151

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 0.001
 Identities = 25/171 (14%), Positives = 46/171 (26%), Gaps = 19/171 (11%)

Query: 142 PEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFEL 201
           P+ C       L    +         L    N+  LYI N      +             
Sbjct: 2   PDACCPHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHL------------- 47

Query: 202 DLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGG 261
                   +  L  L++L ++ + L    P +F  +          +    L     +G 
Sbjct: 48  ----ELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL 103

Query: 262 LLEAFIVSENHFQGTI-PESLRNCTSLIRVRLNGNNLTGNISEALGLYPNL 311
            L+  ++S N    +     L+         +    L  +    L   PN 
Sbjct: 104 SLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPNA 154

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.003
 Identities = 22/132 (16%), Positives = 42/132 (31%), Gaps = 5/132 (3%)

Query: 77  QLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEV-GLLTHLKVLSFQFNE 135
               L  + +G        +     L+ + +++ Q    +       L  L+ L+   + 
Sbjct: 9   GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG 67

Query: 136 LDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNL 195
           L    P        +  L L  N    SL        ++  L ++ N L  S    +  L
Sbjct: 68  LRFVAPDAFHFTPRLSRLNLSFNA-LESLSWKTVQGLSLQELVLSGNPLHCSC--ALRWL 124

Query: 196 KFLFELDLSFLP 207
           +   E  L  +P
Sbjct: 125 QRWEEEGLGGVP 136

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	716
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.97
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.97
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.94
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.92
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.89
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.81
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.79
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.78
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.76
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.76
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.76
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.75
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.75
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.74
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.71
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	99.59
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	99.58
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	99.57
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	99.57
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	99.55
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.54
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	99.54
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	99.53
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	99.53
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	99.53
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	99.52
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.52
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.52
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	99.51
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.51
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	99.51
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.51
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	99.51
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.51
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	99.5
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	99.5
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	99.5
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	99.49
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.49
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	99.49
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.49
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	99.48
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	99.48
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	99.48
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	99.48
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.47
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	99.47
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	99.47
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	99.45
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	99.44
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	99.44
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	99.44
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	99.44
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	99.44
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	99.44
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	99.43
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	99.43
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	99.42
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	99.41
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	99.39
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	99.37
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	99.37
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	99.36
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.33
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	99.32
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	99.32
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	99.31
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	99.3
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	99.29
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	99.29
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.29
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.28
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	99.28
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.28
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	99.24
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	99.23
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	99.2
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	99.19
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	99.17
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	99.16
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	99.14
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	99.14
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	99.13
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	99.12
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	99.11
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	98.97
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	98.97
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	98.87
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.46
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.42
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	98.42
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	98.24
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.66
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.6
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.89
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.76
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	89.51
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	88.52

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=1.1e-38  Score=328.22  Aligned_cols=293  Identities=31%  Similarity=0.543  Sum_probs=175.3

Q ss_pred             ChHHHHHHHHHHhhcccCCCCCCCCCcCCCCCCCCCCCCc--ceeeeeeCCC---CCEEEEEcCCCCCccccCCCCCCCC
Q 041300            1 SNEEADALLKWKASLQSHNQSLLPSWTNASTNVSSKISPC--AWYGISCNDA---GRVTNISLRNTGLSGTLRDFSFSSF   75 (716)
Q Consensus         1 ~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~c--~w~gv~c~~~---~~v~~l~l~~~~l~~~~~~~~f~~l   75 (716)
                      .|+|++||++||+++ .+|. .+.+|...+       |||  +|.||+|+..   +||+.|+|+++++.|..        
T Consensus         4 ~~~e~~aLl~~k~~~-~~~~-~l~sW~~~~-------d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~--------   66 (313)
T d1ogqa_           4 NPQDKQALLQIKKDL-GNPT-TLSSWLPTT-------DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPY--------   66 (313)
T ss_dssp             CHHHHHHHHHHHHHT-TCCG-GGTTCCTTS-------CTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCE--------
T ss_pred             CHHHHHHHHHHHHHC-CCCC-cCCCCCCCC-------CCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCC--------
Confidence            378999999999999 4553 588996555       899  5999999853   37888888888877642        


Q ss_pred             CCCcEEECCCCCccccCcccccCCCCCCEEECcC-CcCcccCCccccCCCCCCEEEcccccCccCCCccccCCCCCceee
Q 041300           76 PQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDS-NQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELF  154 (716)
Q Consensus        76 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  154 (716)
                                     .+|.+++++++|++|+|++ |.+.|.+|..|+++++|++|+|++|++.+..+..+..+.+|+.++
T Consensus        67 ---------------~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~  131 (313)
T d1ogqa_          67 ---------------PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD  131 (313)
T ss_dssp             ---------------ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred             ---------------CCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccc
Confidence                           2344444555555555543 444444555555555555555555555554454455555555555


Q ss_pred             cccccccCCCCccccCCcCCcEEEeecccccccccccccCCCCCceeeCCCCCcccCCCCccCEEEeeCCcCcccCCCcc
Q 041300          155 LYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSF  234 (716)
Q Consensus       155 L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  234 (716)
                      +++|.+.+.+|..|.++++|+.+++++|.+++.+|..+..+..                 .++.+++++|++++..|..+
T Consensus       132 l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~-----------------l~~~l~~~~n~l~~~~~~~~  194 (313)
T d1ogqa_         132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK-----------------LFTSMTISRNRLTGKIPPTF  194 (313)
T ss_dssp             CCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCT-----------------TCCEEECCSSEEEEECCGGG
T ss_pred             cccccccccCchhhccCcccceeeccccccccccccccccccc-----------------cccccccccccccccccccc
Confidence            5555555555555555555555555555555444444333321                 12344444444444444444


Q ss_pred             ccccccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEE
Q 041300          235 GNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFI  314 (716)
Q Consensus       235 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  314 (716)
                      .......++++.+.+.                        +.+|..+..+++++.+++++|.+++.++ .+..+++|+.|
T Consensus       195 ~~l~~~~l~l~~~~~~------------------------~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L  249 (313)
T d1ogqa_         195 ANLNLAFVDLSRNMLE------------------------GDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGL  249 (313)
T ss_dssp             GGCCCSEEECCSSEEE------------------------ECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEE
T ss_pred             cccccccccccccccc------------------------cccccccccccccccccccccccccccc-ccccccccccc
Confidence            3333334444444443                        4444555555666666666666665543 35556677777


Q ss_pred             EccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCc
Q 041300          315 DLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNH  368 (716)
Q Consensus       315 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  368 (716)
                      +|++|++++.+|..++.+++|++|+|++|+++|.+|. ++.+++|+.+++++|+
T Consensus       250 ~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             ECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSS
T ss_pred             cCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCc
Confidence            7777777777777777777777777777777766663 4566777777777776

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.97  E-value=3.6e-30  Score=264.08  Aligned_cols=254  Identities=26%  Similarity=0.443  Sum_probs=175.8

Q ss_pred             CCcEEEccCCcCCC--ccchhhCCCCCCCEEEccC-CccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEE
Q 041300          286 SLIRVRLNGNNLTG--NISEALGLYPNLTFIDLSR-NNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQAL  362 (716)
Q Consensus       286 ~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  362 (716)
                      +++.|+|++|.+++  .+|..++.+++|++|+|++ |.+.|.+|..++++++|++|+|++|++.+..+..+..+.+|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            45556666666655  2455666666666666664 56666666666666777777777777766666666667777777


Q ss_pred             EccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCC-CEEEccCCcCCccCchhhcCcCCCCEEECcCCcC
Q 041300          363 DLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIEL-EYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQF  441 (716)
Q Consensus       363 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  441 (716)
                      ++++|.+.+.+|..+..++.|+.+++++|.+++.+|..+..+..+ +.+++++|++++..|..+..+.. ..++++++..
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l~l~~~~~  209 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLSRNML  209 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC-SEEECCSSEE
T ss_pred             ccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence            777777766667777777777777777777776677666666654 66777777777666666665543 3577777777


Q ss_pred             cccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCcccccCCCcc
Q 041300          442 VLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNST  521 (716)
Q Consensus       442 ~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~~p~~~  521 (716)
                      .+.+|..+..+++++.+++++|.+.+.+| .+..+++|+.|++++|++++.+|..|..+++|++|||++|+|+|.+|...
T Consensus       210 ~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~  288 (313)
T d1ogqa_         210 EGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG  288 (313)
T ss_dssp             EECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred             ccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcc
Confidence            77777777777777777777777765544 46667777777777777777777777777777777777777777777666


Q ss_pred             ccCCCCcccccCCCCCCCCC
Q 041300          522 AFRNAPVEALEGNKELCGGV  541 (716)
Q Consensus       522 ~~~~~~~~~~~~n~~~c~~~  541 (716)
                      .+.......+.+|+.+||.|
T Consensus       289 ~L~~L~~l~l~~N~~l~g~p  308 (313)
T d1ogqa_         289 NLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             TGGGSCGGGTCSSSEEESTT
T ss_pred             cCCCCCHHHhCCCccccCCC
Confidence            66666677777777777754

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.97  E-value=2e-28  Score=258.82  Aligned_cols=342  Identities=25%  Similarity=0.324  Sum_probs=231.8

Q ss_pred             CCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcccccCccCCCccccCCCCCce
Q 041300           73 SSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEE  152 (716)
Q Consensus        73 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  152 (716)
                      ..+.+|++|++++|.|..+  +.+..+++|++|+|++|+|++. | .++++++|++|++++|.+.+..  .+.++++|+.
T Consensus        41 ~~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l-~-~l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~  114 (384)
T d2omza2          41 TDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIADIT--PLANLTNLTG  114 (384)
T ss_dssp             HHHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCCE
T ss_pred             HHhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCCC-c-cccCCccccccccccccccccc--cccccccccc
Confidence            3456788888888888653  3577788888888888888754 3 3788888888888888887543  3778888888


Q ss_pred             eecccccccCCCCccccCCcCCcEEEeecccccccccccccCCCCCceeeCCC-CCcccCCCCccCEEEeeCCcCcccCC
Q 041300          153 LFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSF-LPLSVGNLTNLKSLGLMDNHLSGSIP  231 (716)
Q Consensus       153 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~  231 (716)
                      |++++|.+++..+  ......+..+....|.+..................... ....+.......              
T Consensus       115 L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------  178 (384)
T d2omza2         115 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLE--------------  178 (384)
T ss_dssp             EECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCC--------------
T ss_pred             ccccccccccccc--ccccccccccccccccccccccccccccccccccccccchhhhhccccccc--------------
Confidence            8888888775443  34456677777777776543332222111111111000 011111122222              


Q ss_pred             CccccccccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCC
Q 041300          232 PSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNL  311 (716)
Q Consensus       232 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L  311 (716)
                               ......|...  ....+..++.++.+++++|.+++..|  +..+++|+.|++++|.++..  ..+..+++|
T Consensus       179 ---------~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L  243 (384)
T d2omza2         179 ---------RLDISSNKVS--DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNL  243 (384)
T ss_dssp             ---------EEECCSSCCC--CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTC
T ss_pred             ---------cccccccccc--cccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhccccc
Confidence                     2222223222  12334455666777777777765544  34567788888888887753  356677888


Q ss_pred             CEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCC
Q 041300          312 TFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGN  391 (716)
Q Consensus       312 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  391 (716)
                      +.|++++|.+++..+  +..+++|++|++++|++++..  .+..++.++.++++.|.+.+  ...+..+++++.|++++|
T Consensus       244 ~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n  317 (384)
T d2omza2         244 TDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFN  317 (384)
T ss_dssp             SEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSS
T ss_pred             chhccccCccCCCCc--ccccccCCEeeccCcccCCCC--cccccccccccccccccccc--ccccchhcccCeEECCCC
Confidence            888888888876543  677888888888888887543  36778888888888888874  345777888889999999


Q ss_pred             cccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCC
Q 041300          392 QLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHN  463 (716)
Q Consensus       392 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N  463 (716)
                      ++++..  .+..+++|+.|++++|++++ ++ .+.++++|++|++++|++++..|  +.++++|+.|++++|
T Consensus       318 ~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         318 NISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            888653  37788889999999998875 33 58888899999999999886543  788889999999887

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.97  E-value=2.3e-28  Score=258.33  Aligned_cols=355  Identities=23%  Similarity=0.311  Sum_probs=215.2

Q ss_pred             ECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcccccCccCCCccccCCCCCceeeccccccc
Q 041300           82 DLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLN  161 (716)
Q Consensus        82 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  161 (716)
                      +++.+.+.+.+.  ...+.+|++|++++|.|+..  +.++.+++|++|+|++|++++..  .++++++|++|++++|.+.
T Consensus        28 ~l~~~~~~~~~~--~~~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~  101 (384)
T d2omza2          28 VLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIA  101 (384)
T ss_dssp             HTTCSSTTSEEC--HHHHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred             HhCCCCCCCccC--HHHhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCCCc--cccCCcccccccccccccc
Confidence            455556655443  34677899999999998843  45788999999999999998643  3888999999999999988


Q ss_pred             CCCCccccCCcCCcEEEeecccccccccccccCCCCCceeeCCCCCcccCCCCccCEEEeeCCcCcccCCCccccc-ccc
Q 041300          162 GSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNS-MLT  240 (716)
Q Consensus       162 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~L~  240 (716)
                      +..|  ++++++|+.|++.+|.+++.....                    ....+..+....|.+....+...... ...
T Consensus       102 ~i~~--l~~l~~L~~L~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  159 (384)
T d2omza2         102 DITP--LANLTNLTGLTLFNNQITDIDPLK--------------------NLTNLNRLELSSNTISDISALSGLTSLQQL  159 (384)
T ss_dssp             CCGG--GTTCTTCCEEECCSSCCCCCGGGT--------------------TCTTCSEEEEEEEEECCCGGGTTCTTCSEE
T ss_pred             cccc--cccccccccccccccccccccccc--------------------cccccccccccccccccccccccccccccc
Confidence            6543  788888999988888876433211                    12244555555554432221111100 111


Q ss_pred             EEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCc
Q 041300          241 WLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNN  320 (716)
Q Consensus       241 ~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~  320 (716)
                      ........+                             ..+...+.........|...  ....+..+++++.+++++|.
T Consensus       160 ~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~  208 (384)
T d2omza2         160 SFGNQVTDL-----------------------------KPLANLTTLERLDISSNKVS--DISVLAKLTNLESLIATNNQ  208 (384)
T ss_dssp             EEEESCCCC-----------------------------GGGTTCTTCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSC
T ss_pred             ccccccchh-----------------------------hhhccccccccccccccccc--cccccccccccceeeccCCc
Confidence            111111111                             11222223333333333322  12334445566666666666


Q ss_pred             cccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcc
Q 041300          321 FYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTE  400 (716)
Q Consensus       321 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  400 (716)
                      +++..+  +..+++|+.|++++|+++..  ..+..+++|+.|++++|.+++..  .+..+++|+.|++++|++++..  .
T Consensus       209 i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~--~  280 (384)
T d2omza2         209 ISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNIS--P  280 (384)
T ss_dssp             CCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCG--G
T ss_pred             cCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCC--cccccccCCEeeccCcccCCCC--c
Confidence            554432  34455666666666666532  24556666777777777666433  2556667777777777766432  3


Q ss_pred             cCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCC
Q 041300          401 IGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLE  480 (716)
Q Consensus       401 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~  480 (716)
                      +..++.++.++++.|.+.+.  ..+..+++++.|++++|++++..  .+..+++|++|++++|++++ ++ .+.++++|+
T Consensus       281 ~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~  354 (384)
T d2omza2         281 LAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNIN  354 (384)
T ss_dssp             GTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCC
T ss_pred             cccccccccccccccccccc--cccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCC
Confidence            55666777777777776642  34566677777777777776432  36667777777777777764 33 466777777


Q ss_pred             EEECcCCcCcccCCcCCcCCCCCCEEEccCC
Q 041300          481 KLNLSHNNLSGLIPNCFEGMHGLSIIDISDN  511 (716)
Q Consensus       481 ~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N  511 (716)
                      +|++++|+|++..|  +.++++|+.|++++|
T Consensus       355 ~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         355 WLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             EEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             EEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            77777777776654  667777777777776

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=1.4e-24  Score=221.05  Aligned_cols=267  Identities=21%  Similarity=0.210  Sum_probs=210.5

Q ss_pred             cccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEcc
Q 041300          238 MLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLS  317 (716)
Q Consensus       238 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls  317 (716)
                      ..++++-+++.++.. |..+  .+.++.|++++|+++...+..|.++++|++|++++|.+....+..|..+++|++|+++
T Consensus        11 ~~~~~~C~~~~L~~l-P~~l--~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          11 HLRVVQCSDLGLEKV-PKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             ETTEEECTTSCCCSC-CCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCEEEecCCCCCcc-CCCC--CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            345555555555533 3333  2456777777777776666678888888888888888888878888888888888888


Q ss_pred             CCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccc--cccCcccCCCCCCcEEEccCCcccc
Q 041300          318 RNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIV--GEIPKELGKLNSLTKLILRGNQLTG  395 (716)
Q Consensus       318 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~N~l~~  395 (716)
                      +|+++.... .  ..+.+..|++..|.+.+..+..+.....+..++...|...  ...+..+..+++|+.+++++|.++ 
T Consensus        88 ~n~l~~l~~-~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-  163 (305)
T d1xkua_          88 KNQLKELPE-K--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-  163 (305)
T ss_dssp             SSCCSBCCS-S--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-
T ss_pred             CCccCcCcc-c--hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-
Confidence            888875433 2  2357888888888888777777778888888888887543  234556788889999999999887 


Q ss_pred             cCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccC
Q 041300          396 RLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICS  475 (716)
Q Consensus       396 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~  475 (716)
                      .+|..+  +++|+.|++++|.+....+..|.+++.++.|++++|.+.+..+..+.++++|++|+|++|+++ .+|..+..
T Consensus       164 ~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~  240 (305)
T d1xkua_         164 TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD  240 (305)
T ss_dssp             SCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred             ccCccc--CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-cccccccc
Confidence            445433  578999999999998888888999999999999999999888888999999999999999998 56778999


Q ss_pred             CCCCCEEECcCCcCcccCCcCC------cCCCCCCEEEccCCccc
Q 041300          476 LKSLEKLNLSHNNLSGLIPNCF------EGMHGLSIIDISDNQLQ  514 (716)
Q Consensus       476 l~~L~~L~ls~N~l~~~~~~~~------~~~~~L~~l~ls~N~l~  514 (716)
                      +++|++|++++|+|+.+....|      ..+.+|+.|++++|+++
T Consensus       241 l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         241 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             ccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            9999999999999987655554      35678999999999986

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=5.6e-25  Score=224.13  Aligned_cols=284  Identities=20%  Similarity=0.219  Sum_probs=236.2

Q ss_pred             ccCEEEeeCCcCcccCCCccccccccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEccC
Q 041300          215 NLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNG  294 (716)
Q Consensus       215 ~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~  294 (716)
                      ..+.++.+++.++ .+|..+. ..+++|++++|+|+...+..|..++.|+.|++++|.+....|..|.+++.|+.|++++
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l~-~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDLP-PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK   88 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             cCCEEEecCCCCC-ccCCCCC-CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence            4677888888887 4465553 4799999999999988777899999999999999999988889999999999999999


Q ss_pred             CcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCc--ccCcccccCCCCCCEEEccCCccccc
Q 041300          295 NNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNIT--GGIPREIGNMSQLQALDLSLNHIVGE  372 (716)
Q Consensus       295 n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~  372 (716)
                      |+++.....   ..+.++.|+++.|.+.+..+..+.....+..++...|...  ...+..+..+++|+.+++++|.+. .
T Consensus        89 n~l~~l~~~---~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~  164 (305)
T d1xkua_          89 NQLKELPEK---MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-T  164 (305)
T ss_dssp             SCCSBCCSS---CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-S
T ss_pred             CccCcCccc---hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-c
Confidence            999865443   3468899999999998877767778888899999888654  334567888999999999999987 4


Q ss_pred             cCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCC
Q 041300          373 IPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKL  452 (716)
Q Consensus       373 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  452 (716)
                      +|..+  +++|+.|++++|..++..+..+..++.++.|++++|.+.+..+..+.++++|++|+|++|+++ .+|..+..+
T Consensus       165 l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l  241 (305)
T d1xkua_         165 IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADH  241 (305)
T ss_dssp             CCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTC
T ss_pred             cCccc--CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccc
Confidence            55443  578999999999999888889999999999999999999888999999999999999999998 568889999


Q ss_pred             CCCCEEECCCCcCccccchhc------cCCCCCCEEECcCCcCc--ccCCcCCcCCCCCCEEE
Q 041300          453 VQLSELDASHNLFGGEIPFQI------CSLKSLEKLNLSHNNLS--GLIPNCFEGMHGLSIID  507 (716)
Q Consensus       453 ~~L~~L~ls~N~l~~~~p~~~------~~l~~L~~L~ls~N~l~--~~~~~~~~~~~~L~~l~  507 (716)
                      ++|++|++++|+|+......|      ..+.+|+.|++++|.+.  .+.|.+|.-+.....++
T Consensus       242 ~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~~~~~~~~~  304 (305)
T d1xkua_         242 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQ  304 (305)
T ss_dssp             SSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEE
T ss_pred             cCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCHhHhcccccCcccc
Confidence            999999999999986544333      45688999999999986  45667776655544443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=6.4e-25  Score=221.05  Aligned_cols=209  Identities=22%  Similarity=0.209  Sum_probs=128.7

Q ss_pred             CCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEcc-CCccccccCcccCCCCCCcEEEc
Q 041300          310 NLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLS-LNHIVGEIPKELGKLNSLTKLIL  388 (716)
Q Consensus       310 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L  388 (716)
                      ++++|+|++|+|+...+..|.++++|++|++++|++....+..+..+..++.++.. .|.+....+..|.++++|+.|++
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l  112 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEec
Confidence            45555555555555544555555555555555555555555555555555555443 34444444555666666666666


Q ss_pred             cCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccc
Q 041300          389 RGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGE  468 (716)
Q Consensus       389 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~  468 (716)
                      ++|.+....+..+....+|+.+++++|.+++..+..|..+++|+.|++++|+++...+..|.++++|+.+++++|++++.
T Consensus       113 ~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i  192 (284)
T d1ozna_         113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV  192 (284)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             CCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhcccccc
Confidence            66666544455555566666666666666655555666666666666666666666666666666666666666666666


Q ss_pred             cchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCcccccCC
Q 041300          469 IPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVP  518 (716)
Q Consensus       469 ~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~~p  518 (716)
                      .|..|..+++|++|++++|++.+..+..|..+++|+.|++++|++.+..+
T Consensus       193 ~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~  242 (284)
T d1ozna_         193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (284)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             ChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCcc
Confidence            66666666667777777777766666666666777777777777765443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=9.7e-24  Score=212.35  Aligned_cols=223  Identities=20%  Similarity=0.201  Sum_probs=165.7

Q ss_pred             EEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcc-cCc
Q 041300          266 FIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVS-MNN  344 (716)
Q Consensus       266 L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~-~n~  344 (716)
                      +..+++.++ .+|..+.  +++++|+|++|+|+...+.+|..+++|++|++++|.+....+..+..++.+..+... .|.
T Consensus        16 v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~   92 (284)
T d1ozna_          16 TSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (284)
T ss_dssp             EECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             EEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            344444444 3344332  456777777777777766777777778888888777777777777777777777654 455


Q ss_pred             CcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchh
Q 041300          345 ITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPES  424 (716)
Q Consensus       345 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  424 (716)
                      ++...+..|.++++|++|++++|.+....+..+...++|+.+++++|++++..+..|..+++|+.|++++|.+.+..+..
T Consensus        93 ~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~  172 (284)
T d1ozna_          93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA  172 (284)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred             cccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhh
Confidence            66666777777888888888888777666666777777888888888887666667777778888888888887777777


Q ss_pred             hcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcc
Q 041300          425 LGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSG  491 (716)
Q Consensus       425 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~  491 (716)
                      |.++++|+.+++++|++++..|..|..+++|++||+++|++.+..+..|..+++|++|++++|.+..
T Consensus       173 f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             hccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCC
Confidence            7888888888888888887777888888888888888888887777778888888888888887764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=8.5e-23  Score=203.00  Aligned_cols=200  Identities=24%  Similarity=0.199  Sum_probs=136.8

Q ss_pred             CCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEcc
Q 041300          310 NLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILR  389 (716)
Q Consensus       310 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  389 (716)
                      .+.+++.+++.++. +|..+.  +++++|+|++|+|++..+..|.++++|++|+|++|+|+.. | .+..+++|+.|+|+
T Consensus        11 ~~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~Ls   85 (266)
T d1p9ag_          11 SHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTLDLS   85 (266)
T ss_dssp             TCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEEECC
T ss_pred             CCeEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-c-cccccccccccccc
Confidence            44445555555553 233221  3566666666666655555666666666666666666532 2 24556677777777


Q ss_pred             CCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCcccc
Q 041300          390 GNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEI  469 (716)
Q Consensus       390 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~  469 (716)
                      +|+++ ..+..+..+++|+.|++++|.+.+..+..+..+.+++.|++++|.++...+..+..++.|+.+++++|++++..
T Consensus        86 ~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~  164 (266)
T d1p9ag_          86 HNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP  164 (266)
T ss_dssp             SSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC
T ss_pred             ccccc-ccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccC
Confidence            77776 34556677777777777777777666667777777777777777777666666777778888888888888777


Q ss_pred             chhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCccccc
Q 041300          470 PFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGP  516 (716)
Q Consensus       470 p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~  516 (716)
                      +..|..+++|++|+|++|+|+ .+|..+..+++|+.|+|++|++.+.
T Consensus       165 ~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~Cd  210 (266)
T d1p9ag_         165 AGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN  210 (266)
T ss_dssp             TTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             ccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCC
Confidence            777778888888888888887 4566666778888888888887654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.6e-22  Score=199.48  Aligned_cols=200  Identities=27%  Similarity=0.209  Sum_probs=139.8

Q ss_pred             CCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEE
Q 041300          284 CTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALD  363 (716)
Q Consensus       284 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  363 (716)
                      ...+.+++.++++++.. |..+  .+++++|+|++|.|++..+..|..+++|++|+|++|+|+.. + .++.+++|++|+
T Consensus         9 ~~~~~~v~C~~~~L~~i-P~~l--p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~   83 (266)
T d1p9ag_           9 VASHLEVNCDKRNLTAL-PPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTLD   83 (266)
T ss_dssp             STTCCEEECTTSCCSSC-CSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEEE
T ss_pred             cCCCeEEEccCCCCCee-CcCc--CcCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-c-cccccccccccc
Confidence            34455556666666543 3222  14566677777766666556666667777777777766633 2 345677777777


Q ss_pred             ccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcc
Q 041300          364 LSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVL  443 (716)
Q Consensus       364 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  443 (716)
                      +++|+++ ..+..+..+++|+.|++++|.+....+..+..+.+++.|++++|.+....+..+..+++|+.|++++|++++
T Consensus        84 Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~  162 (266)
T d1p9ag_          84 LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE  162 (266)
T ss_dssp             CCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred             ccccccc-ccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccc
Confidence            7777776 345566777777777777777776666667777777888888887776666777777788888888888877


Q ss_pred             cCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCc
Q 041300          444 ELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLS  490 (716)
Q Consensus       444 ~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~  490 (716)
                      ..+..|..+++|++|||++|+|+ .+|..+..+++|+.|+|++|.+.
T Consensus       163 ~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         163 LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             cCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            66777777888888888888887 66777777888888888888765

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.81  E-value=8.8e-18  Score=173.84  Aligned_cols=152  Identities=26%  Similarity=0.213  Sum_probs=80.7

Q ss_pred             ccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCE
Q 041300          282 RNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQA  361 (716)
Q Consensus       282 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  361 (716)
                      ..++.|+.+++++|......    ....++..+.+..+.+....    ...+.+...++..+.+.+.. .   -......
T Consensus       201 ~~l~~L~~l~l~~n~~~~~~----~~~~~l~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~l~-~---l~~~~~~  268 (353)
T d1jl5a_         201 QNLPFLTTIYADNNLLKTLP----DLPPSLEALNVRDNYLTDLP----ELPQSLTFLDVSENIFSGLS-E---LPPNLYY  268 (353)
T ss_dssp             TTCTTCCEEECCSSCCSSCC----SCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSEES-C---CCTTCCE
T ss_pred             cccccccccccccccccccc----cccccccccccccccccccc----cccccccccccccccccccc-c---ccchhcc
Confidence            34555666666665544321    22345566666666554321    12334555555555443211 0   1123445


Q ss_pred             EEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcC
Q 041300          362 LDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQF  441 (716)
Q Consensus       362 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  441 (716)
                      .++..+.+.+.    ...+++|++|++++|+++ .+|.   .+++|+.|+|++|+|+ .+|..   +.+|++|++++|++
T Consensus       269 ~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~-~lp~---~~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L  336 (353)
T d1jl5a_         269 LNASSNEIRSL----CDLPPSLEELNVSNNKLI-ELPA---LPPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPL  336 (353)
T ss_dssp             EECCSSCCSEE----CCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCC
T ss_pred             cccccCccccc----cccCCCCCEEECCCCccC-cccc---ccCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcC
Confidence            55665555422    123466777777777776 4443   2456777777777776 34432   45677777777777


Q ss_pred             cccCChhhhCCCCCCEEECC
Q 041300          442 VLELPKELEKLVQLSELDAS  461 (716)
Q Consensus       442 ~~~~~~~~~~l~~L~~L~ls  461 (716)
                      + .+|..   ...|+.|.+.
T Consensus       337 ~-~lp~~---~~~L~~L~~~  352 (353)
T d1jl5a_         337 R-EFPDI---PESVEDLRMN  352 (353)
T ss_dssp             S-SCCCC---CTTCCEEECC
T ss_pred             C-CCCcc---ccccCeeECc
Confidence            6 34432   2356666553

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.79  E-value=4e-17  Score=168.82  Aligned_cols=95  Identities=27%  Similarity=0.328  Sum_probs=67.7

Q ss_pred             CCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcccccCccCCCccccCCCCCceeecc
Q 041300           77 QLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLY  156 (716)
Q Consensus        77 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  156 (716)
                      ++++|||++|.++. +|+.   .++|++|+|++|+|+ .+|+.   +.+|+.|++++|.++. ++. +  .+.|++|+++
T Consensus        39 ~l~~LdLs~~~L~~-lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~-l~~-l--p~~L~~L~L~  106 (353)
T d1jl5a_          39 QAHELELNNLGLSS-LPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKA-LSD-L--PPLLEYLGVS  106 (353)
T ss_dssp             TCSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CCS-C--CTTCCEEECC
T ss_pred             CCCEEEeCCCCCCC-CCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccch-hhh-h--cccccccccc
Confidence            68899999999874 5643   468899999999998 56755   4578888888888773 222 1  1357888888


Q ss_pred             cccccCCCCccccCCcCCcEEEeeccccc
Q 041300          157 SNHLNGSLPPFLGNLSNIVRLYINNNSLS  185 (716)
Q Consensus       157 ~N~l~~~~p~~~~~l~~L~~L~L~~n~l~  185 (716)
                      +|.++.. |. ++.+++|++|++++|.++
T Consensus       107 ~n~l~~l-p~-~~~l~~L~~L~l~~~~~~  133 (353)
T d1jl5a_         107 NNQLEKL-PE-LQNSSFLKIIDVDNNSLK  133 (353)
T ss_dssp             SSCCSSC-CC-CTTCTTCCEEECCSSCCS
T ss_pred             ccccccc-cc-hhhhccceeecccccccc
Confidence            8887643 43 566777777777777654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=2.4e-21  Score=208.83  Aligned_cols=110  Identities=21%  Similarity=0.277  Sum_probs=61.8

Q ss_pred             CCcEEECCCCCccccC-cccccCCCCCCEEECcCCcCcc----cCCccccCCCCCCEEEcccccCccC----CCcccc-C
Q 041300           77 QLVHLDLSLNGFFGTI-PSQIGNLTKLSYISLDSNQLSG----KIPAEVGLLTHLKVLSFQFNELDGS----IPPEVC-Q  146 (716)
Q Consensus        77 ~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~----~~~~~~-~  146 (716)
                      +|++||+++|++++.. ...+..+++|+.|+|++|.++.    .+...+..+++|+.|||++|.|+..    +...+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            4566666666665432 2234456666666666666652    2233455666677777776666421    111121 1


Q ss_pred             CCCCceeecccccccCC----CCccccCCcCCcEEEeecccccc
Q 041300          147 LSSIEELFLYSNHLNGS----LPPFLGNLSNIVRLYINNNSLSG  186 (716)
Q Consensus       147 l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~n~l~~  186 (716)
                      ..+|++|+|++|.++..    ++..+..+++|++|++++|.++.
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence            23577777777766543    23445666777777777777654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=2.5e-18  Score=167.94  Aligned_cols=199  Identities=15%  Similarity=0.100  Sum_probs=111.7

Q ss_pred             CCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccC-cccccCCCCCCEEEccC-CccccccCcccCCCCCCcEEE
Q 041300          310 NLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGI-PREIGNMSQLQALDLSL-NHIVGEIPKELGKLNSLTKLI  387 (716)
Q Consensus       310 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~  387 (716)
                      ++++|++++|.++...+..|.++++|++|++++|.+...+ +..|.+++.++++++.. |.+....+..|..+++|+.++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            4555555555555444445555555555555555554332 33455555566555443 445545555555666666666


Q ss_pred             ccCCcccccCCc-ccCCCCCCCEEEccCCcCCccCchhhcCcC-CCCEEECcCCcCcccCChhhhCCCCCCEE-ECCCCc
Q 041300          388 LRGNQLTGRLPT-EIGSLIELEYLDFSANKFNNSVPESLGNLL-KLHYLGLSNNQFVLELPKELEKLVQLSEL-DASHNL  464 (716)
Q Consensus       388 L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L-~ls~N~  464 (716)
                      +++|++....+. .+..+..+..+...++.+....+..|.+++ .++.|++++|+++...+..+. ..++.++ ++++|+
T Consensus       110 l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~-~~~l~~~~~l~~n~  188 (242)
T d1xwdc1         110 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFN-GTQLDELNLSDNNN  188 (242)
T ss_dssp             EESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTT-TCCEEEEECTTCTT
T ss_pred             cchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccccccccccc-chhhhccccccccc
Confidence            666655432221 122334444455555555554455555443 566677777777644444333 3344333 466677


Q ss_pred             CccccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEcc
Q 041300          465 FGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDIS  509 (716)
Q Consensus       465 l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls  509 (716)
                      ++...+..|.++++|++|++++|+|+.+.+..|.+++.|+.+++.
T Consensus       189 l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         189 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             CCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred             cccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence            775555567777888888888888876666667776666665553

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.6e-20  Score=202.17  Aligned_cols=113  Identities=23%  Similarity=0.247  Sum_probs=77.2

Q ss_pred             CCCEEECcCCcCcccC-CccccCCCCCCEEEcccccCcc----CCCccccCCCCCceeecccccccCCC----Ccccc-C
Q 041300          101 KLSYISLDSNQLSGKI-PAEVGLLTHLKVLSFQFNELDG----SIPPEVCQLSSIEELFLYSNHLNGSL----PPFLG-N  170 (716)
Q Consensus       101 ~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~----p~~~~-~  170 (716)
                      +|+.||+++|++++.. .+.+..+++|++|+|++|.++.    .++..+..+++|++|+|++|.|+...    ...+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            5889999999997532 3346678999999999998873    33455678899999999999886322    22222 2


Q ss_pred             CcCCcEEEeecccccccccccccCCCCCceeeCCCCCcccCCCCccCEEEeeCCcCc
Q 041300          171 LSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLS  227 (716)
Q Consensus       171 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~L~~L~l~~n~l~  227 (716)
                      ..+|++|+|++|.+++.....+              +..+..+++|++|++++|.+.
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l--------------~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVL--------------SSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHH--------------HHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCCCEEECCCCCccccccccc--------------cchhhccccccccccccccch
Confidence            3579999999998875432221              112334456777777777665

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=7e-18  Score=162.84  Aligned_cols=186  Identities=25%  Similarity=0.336  Sum_probs=108.3

Q ss_pred             CCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEE
Q 041300          308 YPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLI  387 (716)
Q Consensus       308 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  387 (716)
                      +.+|+.|++.+|.++..  ..+..+++|++|++++|++++..|  +..+++|+++++++|.++. + ..+..+++|+.++
T Consensus        40 l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~-i-~~l~~l~~L~~l~  113 (227)
T d1h6ua2          40 LDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLD  113 (227)
T ss_dssp             HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEE
T ss_pred             cCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeecccc--ccccccccccccccccccc-c-ccccccccccccc
Confidence            34555555555555432  234455555555555555554322  5555666666666665542 2 2355566666666


Q ss_pred             ccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCcc
Q 041300          388 LRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGG  467 (716)
Q Consensus       388 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~  467 (716)
                      ++++...+.  ..+...+.+..+.++++.+...  ..+..+++|+.|++++|.+...  ..+.++++|++|++++|++++
T Consensus       114 l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~  187 (227)
T d1h6ua2         114 LTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISD  187 (227)
T ss_dssp             CTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC
T ss_pred             ccccccccc--chhccccchhhhhchhhhhchh--hhhccccccccccccccccccc--hhhcccccceecccCCCccCC
Confidence            666655432  2344556666666666666532  2355566677777777766532  236667777777777777764


Q ss_pred             ccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEcc
Q 041300          468 EIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDIS  509 (716)
Q Consensus       468 ~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls  509 (716)
                      . + .+.++++|++|++++|+++.+.|  +..+++|+.|+++
T Consensus       188 l-~-~l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~ls  225 (227)
T d1h6ua2         188 I-S-PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT  225 (227)
T ss_dssp             C-G-GGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEE
T ss_pred             C-h-hhcCCCCCCEEECcCCcCCCCcc--cccCCCCCEEEee
Confidence            3 2 25667777777777777775533  6677777777775

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=9.1e-18  Score=162.03  Aligned_cols=190  Identities=23%  Similarity=0.305  Sum_probs=130.9

Q ss_pred             cccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCC
Q 041300          281 LRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQ  360 (716)
Q Consensus       281 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  360 (716)
                      ++.+.+|+.|++.+|+++..  ..+..+++|++|++++|.+++..+  +..+++++++++++|.++..  ..+.++++|+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i--~~l~~l~~L~  110 (227)
T d1h6ua2          37 QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIK  110 (227)
T ss_dssp             HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred             HHHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeecccc--cccccccccccccccccccc--cccccccccc
Confidence            34556677777777776643  246667777777777777765433  66677777777777776632  2466777778


Q ss_pred             EEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCc
Q 041300          361 ALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQ  440 (716)
Q Consensus       361 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~  440 (716)
                      .++++++...+.  ..+...+.+..+.++++.+...  ..+..+++|+.|++++|.+.+..  .+.++++|+.|+|++|+
T Consensus       111 ~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~  184 (227)
T d1h6ua2         111 TLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNK  184 (227)
T ss_dssp             EEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSC
T ss_pred             cccccccccccc--chhccccchhhhhchhhhhchh--hhhccccccccccccccccccch--hhcccccceecccCCCc
Confidence            887777776532  3355667777788877777533  33566777888888888776432  36778888888888888


Q ss_pred             CcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcC
Q 041300          441 FVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSH  486 (716)
Q Consensus       441 l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~  486 (716)
                      ++. ++ .+.++++|++|++++|++++..|  +.++++|+.|++++
T Consensus       185 l~~-l~-~l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         185 ISD-IS-PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN  226 (227)
T ss_dssp             CCC-CG-GGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEE
T ss_pred             cCC-Ch-hhcCCCCCCEEECcCCcCCCCcc--cccCCCCCEEEeeC
Confidence            764 33 37778888888888888875443  67888888888763

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=4.6e-18  Score=166.03  Aligned_cols=218  Identities=19%  Similarity=0.137  Sum_probs=153.1

Q ss_pred             cEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCcccccc-CCCCCCCCCCCEEEccc
Q 041300          264 EAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEI-SSNWGKCPKLGTLNVSM  342 (716)
Q Consensus       264 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~  342 (716)
                      +.++.++..++ .+|..+.  +++++|++++|+++...+.+|..+++|++|++++|.+...+ +..|..+++++.+.+..
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            34555555555 4444432  46788888888888777777888888888888888876543 45677788888888764


Q ss_pred             -CcCcccCcccccCCCCCCEEEccCCccccccCc-ccCCCCCCcEEEccCCcccccCCcccCCCC-CCCEEEccCCcCCc
Q 041300          343 -NNITGGIPREIGNMSQLQALDLSLNHIVGEIPK-ELGKLNSLTKLILRGNQLTGRLPTEIGSLI-ELEYLDFSANKFNN  419 (716)
Q Consensus       343 -n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~  419 (716)
                       |.+....+..|.++++|+++++++|.+....+. .+..+..+..+...++++....+..+.+++ .++.|++++|+++.
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~  167 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  167 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             cccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccc
Confidence             667777777788888888888888888643322 234556666667777777766666666654 67888888888886


Q ss_pred             cCchhhcCcCCCCE-EECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECc
Q 041300          420 SVPESLGNLLKLHY-LGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLS  485 (716)
Q Consensus       420 ~~~~~~~~l~~L~~-L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls  485 (716)
                      ..+..+. ..+++. +++++|+++...+..|.++++|++|++++|+++...+..|.+++.|+.+++.
T Consensus       168 i~~~~~~-~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         168 IHNCAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             ECTTTTT-TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred             ccccccc-chhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence            5554444 445444 4567788876555668888999999999999886656666766666665543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.74  E-value=2e-18  Score=161.78  Aligned_cols=157  Identities=24%  Similarity=0.274  Sum_probs=74.6

Q ss_pred             CCCEEEccCCcccccc-CcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEEC
Q 041300          358 QLQALDLSLNHIVGEI-PKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGL  436 (716)
Q Consensus       358 ~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  436 (716)
                      ++++|+|++|+|++.+ +..|..+++|+.|+|++|++....+..+..+++|++|+|++|+|....+..|.++++|++|+|
T Consensus        30 ~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L  109 (192)
T d1w8aa_          30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCccccccc
Confidence            4444444444444322 233444445555555555554444444444555555555555555444444555555555555


Q ss_pred             cCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCccccc
Q 041300          437 SNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGP  516 (716)
Q Consensus       437 s~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~  516 (716)
                      ++|+|++..+..|..+++|++|+|++|.+....+..+. ...++.+.+..|.++...|..+   .+++.+|++.|.+.+.
T Consensus       110 ~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~-~~~l~~~~l~~~~~~c~~p~~l---~~~~l~~L~~n~l~C~  185 (192)
T d1w8aa_         110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF-AEWLRKKSLNGGAARCGAPSKV---RDVQIKDLPHSEFKCS  185 (192)
T ss_dssp             CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHH-HHHHHHHCCSGGGCBBCSSTTT---TTSBGGGSCTTTCCCC
T ss_pred             CCccccccCHHHhcCCcccccccccccccccccchHHH-hhhhhhhcccCCCeEeCCChhh---cCCEeeecCHhhCcCC
Confidence            55555544444455555555555555554432211110 1123344455555555445433   3345566666666554


Q ss_pred             CC
Q 041300          517 VP  518 (716)
Q Consensus       517 ~p  518 (716)
                      .+
T Consensus       186 ~~  187 (192)
T d1w8aa_         186 SE  187 (192)
T ss_dssp             CC
T ss_pred             CC
Confidence            33

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=5.8e-17  Score=153.96  Aligned_cols=164  Identities=23%  Similarity=0.322  Sum_probs=80.8

Q ss_pred             CCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEE
Q 041300          308 YPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLI  387 (716)
Q Consensus       308 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  387 (716)
                      +.+|++|++++|.++...  .+..+++|++|++++|++++..  .++.+++|++|++++|++                  
T Consensus        45 L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i------------------  102 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKV------------------  102 (210)
T ss_dssp             HHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCC------------------
T ss_pred             hcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccc------------------
Confidence            345555666655554321  2344555555555555554322  234444555555555544                  


Q ss_pred             ccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCcc
Q 041300          388 LRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGG  467 (716)
Q Consensus       388 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~  467 (716)
                            ++ ++ .+..+++|+.|++++|.+..  ...+..++.++.+++++|.++.  +..+..+++|+++++++|++++
T Consensus       103 ------~~-l~-~l~~l~~L~~L~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~  170 (210)
T d1h6ta2         103 ------KD-LS-SLKDLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD  170 (210)
T ss_dssp             ------CC-GG-GGTTCTTCCEEECTTSCCCC--CGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC
T ss_pred             ------cc-cc-cccccccccccccccccccc--cccccccccccccccccccccc--cccccccccccccccccccccc
Confidence                  42 22 24444555555555554432  1234445555555555555542  2234445555555555555553


Q ss_pred             ccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEcc
Q 041300          468 EIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDIS  509 (716)
Q Consensus       468 ~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls  509 (716)
                      ..+  +.++++|+.|++++|+|+.+ | .+.++++|++|+++
T Consensus       171 i~~--l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         171 IVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELF  208 (210)
T ss_dssp             CGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEE
T ss_pred             ccc--ccCCCCCCEEECCCCCCCCC-h-hhcCCCCCCEEEcc
Confidence            222  45556666666666666543 2 35556666666654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.71  E-value=1.3e-17  Score=156.26  Aligned_cols=129  Identities=25%  Similarity=0.288  Sum_probs=77.2

Q ss_pred             CEEEccCCccccccCcccCCCCCCcEEEccCCcccccC-CcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcC
Q 041300          360 QALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRL-PTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSN  438 (716)
Q Consensus       360 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  438 (716)
                      ++++.++++++ .+|..+.  +++++|+|++|+|+..+ +..|.++++|+.|+|++|.+....+..|..+++|++|+|++
T Consensus        11 ~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            45666666666 4554432  45666666666665422 34455666666666666666655566666666666666666


Q ss_pred             CcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcc
Q 041300          439 NQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSG  491 (716)
Q Consensus       439 N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~  491 (716)
                      |+++...+..|.++++|++|+|++|+|++..|..|..+++|++|+|++|.+..
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             ccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccc
Confidence            66665555556666666666666666665555556666666666666665543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=6.2e-17  Score=153.73  Aligned_cols=179  Identities=23%  Similarity=0.297  Sum_probs=131.6

Q ss_pred             EecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCc
Q 041300          267 IVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNIT  346 (716)
Q Consensus       267 ~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  346 (716)
                      .+..+.+++.++.  ..+.+|+.|++++|.++...  .+..+++|++|++++|++++..  .++.+++|+.|++++|+++
T Consensus        30 ~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~  103 (210)
T d1h6ta2          30 NLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVK  103 (210)
T ss_dssp             HTTCSCTTSEECH--HHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred             HhCcCccCCccCH--HHhcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--ccccCcccccccccccccc
Confidence            3455555554442  35778999999999998653  4778999999999999998754  3678999999999999998


Q ss_pred             ccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhc
Q 041300          347 GGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLG  426 (716)
Q Consensus       347 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  426 (716)
                      +. + .+..+++|+.|++++|.+..  ...+..+++++.+++++|.+++  +..+..+++|+.+++++|++++..  .+.
T Consensus       104 ~l-~-~l~~l~~L~~L~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~--~l~  175 (210)
T d1h6ta2         104 DL-S-SLKDLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIV--PLA  175 (210)
T ss_dssp             CG-G-GGTTCTTCCEEECTTSCCCC--CGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCG--GGT
T ss_pred             cc-c-cccccccccccccccccccc--cccccccccccccccccccccc--cccccccccccccccccccccccc--ccc
Confidence            53 3 57889999999999998763  3457777888888888888764  234566777777777777776432  266


Q ss_pred             CcCCCCEEECcCCcCcccCChhhhCCCCCCEEECC
Q 041300          427 NLLKLHYLGLSNNQFVLELPKELEKLVQLSELDAS  461 (716)
Q Consensus       427 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls  461 (716)
                      ++++|+.|+|++|+++. ++ .+.++++|++|+|+
T Consensus       176 ~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         176 GLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             TCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEE
T ss_pred             CCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEcc
Confidence            66777777777776653 33 36666666666654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=1.2e-16  Score=150.40  Aligned_cols=162  Identities=28%  Similarity=0.352  Sum_probs=73.1

Q ss_pred             EccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccc
Q 041300          291 RLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIV  370 (716)
Q Consensus       291 ~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  370 (716)
                      .++.+.+++.+..  ..++++++|++++|.++..  ..+..+++|++|++++|++++..|  +.++++|++|++++|.+.
T Consensus        24 ~l~~~~~~~~~~~--~~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~   97 (199)
T d2omxa2          24 VLGKTNVTDTVSQ--TDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA   97 (199)
T ss_dssp             HTTCSSTTSEECH--HHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             HhCCCCCCCccCH--HHhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCccc--ccCCcccccccccccccc
Confidence            3445555543322  2345566666666665532  124445555555555555553322  445555555555555544


Q ss_pred             cccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhh
Q 041300          371 GEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELE  450 (716)
Q Consensus       371 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  450 (716)
                      . ++ .+..+++|+.|++++|.+...  ..+..+++|+.|++++|.+.. + ..+..+++|+.|++++|++++.  ..+.
T Consensus        98 ~-~~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l--~~l~  169 (199)
T d2omxa2          98 D-IT-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDL--KPLA  169 (199)
T ss_dssp             C-CG-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCC--GGGT
T ss_pred             c-cc-ccccccccccccccccccccc--cccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccCC--cccc
Confidence            2 11 244445555555555444321  224444444444444444432 1 1234444444444444444321  1233


Q ss_pred             CCCCCCEEECCCCcCc
Q 041300          451 KLVQLSELDASHNLFG  466 (716)
Q Consensus       451 ~l~~L~~L~ls~N~l~  466 (716)
                      ++++|++|++++|+++
T Consensus       170 ~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         170 NLTTLERLDISSNKVS  185 (199)
T ss_dssp             TCTTCCEEECCSSCCC
T ss_pred             CCCCCCEEECCCCCCC
Confidence            4444444444444443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=2.3e-16  Score=148.48  Aligned_cols=162  Identities=23%  Similarity=0.373  Sum_probs=87.1

Q ss_pred             CCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEE
Q 041300          331 KCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYL  410 (716)
Q Consensus       331 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  410 (716)
                      .+++++.|++++|.++..  ..+..+++|++|++++|++++..|  +.++++|+.|++++|.+.. ++ .+.+++.|+.|
T Consensus        38 ~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L  111 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGL  111 (199)
T ss_dssp             HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEE
T ss_pred             HhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCccc--ccCCccccccccccccccc-cc-ccccccccccc
Confidence            345566666666665532  234555666666666666654322  5556666666666665542 22 25556666666


Q ss_pred             EccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCc
Q 041300          411 DFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLS  490 (716)
Q Consensus       411 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~  490 (716)
                      ++++|.+...  ..+..+++|+.|++++|++.. + +.+..+++|+.|++++|++++..  .+.++++|+.|++++|+++
T Consensus       112 ~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         112 TLFNNQITDI--DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVS  185 (199)
T ss_dssp             ECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred             cccccccccc--cccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccCCc--cccCCCCCCEEECCCCCCC
Confidence            6666555432  234555666666666665542 2 23555556666666666655432  2455666666666666665


Q ss_pred             ccCCcCCcCCCCCCEE
Q 041300          491 GLIPNCFEGMHGLSII  506 (716)
Q Consensus       491 ~~~~~~~~~~~~L~~l  506 (716)
                      .+  +.+..+++|+.|
T Consensus       186 ~i--~~l~~L~~L~~L  199 (199)
T d2omxa2         186 DI--SVLAKLTNLESL  199 (199)
T ss_dssp             CC--GGGGGCTTCSEE
T ss_pred             CC--ccccCCCCCCcC
Confidence            43  134555555543

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=5.5e-16  Score=152.52  Aligned_cols=87  Identities=26%  Similarity=0.507  Sum_probs=78.2

Q ss_pred             cCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      ++|...+.||+|+||+||+|.+.+++.||||+++....     ..++|.+|++++++++|||||+++|+|.+++..++||
T Consensus         5 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~-----~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~lv~   79 (263)
T d1sm2a_           5 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM-----SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVF   79 (263)
T ss_dssp             SCEEEEEEEECCSSCCEEEEEETTTEEEEEEECCSSSS-----CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEE
T ss_pred             HHcEEEEEEeeCCCeEEEEEEECCCCEEEEEEECCCcC-----cHHHHHHHHHHHHhcCCCCcccccceeccCCceEEEE
Confidence            46788899999999999999988888999999975321     3467999999999999999999999999999999999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      |||++|+|.+++
T Consensus        80 E~~~~g~L~~~l   91 (263)
T d1sm2a_          80 EFMEHGCLSDYL   91 (263)
T ss_dssp             ECCTTCBHHHHH
T ss_pred             EecCCCcHHHHh
Confidence            999999999876

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=9.3e-16  Score=150.03  Aligned_cols=87  Identities=24%  Similarity=0.484  Sum_probs=78.3

Q ss_pred             cCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      ++|...++||+|+||+||+|++++++.||||+++....     ..++|.+|++++++++|||||+++|+|.+++..++||
T Consensus         4 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~l~~~~~-----~~~~~~~Ev~~~~~l~HpnIv~~~g~~~~~~~~~iv~   78 (258)
T d1k2pa_           4 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM-----SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIIT   78 (258)
T ss_dssp             CCCCCCCCCCEETTEEEEEEEETTTEEEEEEEEESSSS-----CHHHHHHHHHHHHTCCCTTBCCEEEEECCSSSEEEEE
T ss_pred             HHCEEeEEEecCCCeEEEEEEECCCCEEEEEEECcCcC-----CHHHHHHHHHHHHhcCCCceeeEEEEEeeCCceEEEE
Confidence            57888999999999999999998888999999976321     3467999999999999999999999999999999999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      |||++|+|.+++
T Consensus        79 Ey~~~g~l~~~~   90 (258)
T d1k2pa_          79 EYMANGCLLNYL   90 (258)
T ss_dssp             ECCTTEEHHHHH
T ss_pred             EccCCCcHHHhh
Confidence            999999998874

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=5.7e-16  Score=154.24  Aligned_cols=93  Identities=29%  Similarity=0.506  Sum_probs=79.8

Q ss_pred             HHHHhhcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC
Q 041300          618 EIVRETNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA  696 (716)
Q Consensus       618 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~  696 (716)
                      +++...++|...+.||+|+||+||+|... +++.||||+++....     ..++|.+|+++|++++|||||+++|+|.++
T Consensus        11 ~wei~~~~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~-----~~~~~~~E~~il~~l~HpnIv~~~~~~~~~   85 (287)
T d1opja_          11 KWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-----EVEEFLKEAAVMKEIKHPNLVQLLGVCTRE   85 (287)
T ss_dssp             TTBCCGGGEEEEEETTTTTTSSEEEEEEGGGTEEEEEEECCTTCS-----CHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             ccEecHHHeEEeeEEeeCCCeEEEEEEECCCCeEEEEEEECCccc-----hHHHHHHHHHHHHhCCCCCEecCCccEeeC
Confidence            33334567888999999999999999764 588999999975321     346799999999999999999999999999


Q ss_pred             CeeeEEEcccCCCCHHhHh
Q 041300          697 QHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       697 ~~~~lv~Ey~~~GsL~~~l  715 (716)
                      +..++|||||++|+|.+++
T Consensus        86 ~~~~iv~E~~~~g~l~~~l  104 (287)
T d1opja_          86 PPFYIITEFMTYGNLLDYL  104 (287)
T ss_dssp             SSCEEEEECCTTCBHHHHH
T ss_pred             CeeEEEeecccCcchHHHh
Confidence            9999999999999999876

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=8.5e-16  Score=151.88  Aligned_cols=88  Identities=23%  Similarity=0.463  Sum_probs=76.0

Q ss_pred             hcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      .++|...+.||+|+||+||+|.+++++.||||+++....     ..++|.+|++++++++|||||+++|+|. .+..++|
T Consensus        12 ~~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~~~~~~~-----~~~~~~~E~~~l~~l~HpnIv~~~g~~~-~~~~~iv   85 (272)
T d1qpca_          12 RETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSM-----SPDAFLAEANLMKQLQHQRLVRLYAVVT-QEPIYII   85 (272)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSS-----CHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEE
T ss_pred             HHHeEEeEEEecCCCcEEEEEEECCCCEEEEEEEccCcC-----CHHHHHHHHHHHHhCCCCCEeEEEeeec-cCCeEEE
Confidence            356888899999999999999988888999999975321     3467999999999999999999999875 4567999


Q ss_pred             EcccCCCCHHhHhC
Q 041300          703 YEFLERGSLAAILS  716 (716)
Q Consensus       703 ~Ey~~~GsL~~~l~  716 (716)
                      ||||++|+|.++++
T Consensus        86 ~Ey~~~g~L~~~~~   99 (272)
T d1qpca_          86 TEYMENGSLVDFLK   99 (272)
T ss_dssp             EECCTTCBHHHHTT
T ss_pred             EEeCCCCcHHHHHh
Confidence            99999999998763

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=1.8e-15  Score=151.55  Aligned_cols=89  Identities=28%  Similarity=0.512  Sum_probs=74.1

Q ss_pred             cCCcccccccCCCceEEEEEEcCC-C---CEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCee
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELPS-G---EVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHS  699 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~~-~---~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~  699 (716)
                      ..|...++||+|+||+||+|.... +   ..||||++.....   ....++|.+|+++|++++|||||+++|+|.+++..
T Consensus        26 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~~~  102 (299)
T d1jpaa_          26 SCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYT---EKQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPV  102 (299)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEECC---CCEEEEEEECCSSCC---HHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSC
T ss_pred             hhcEEeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccC---HHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEE
Confidence            345667899999999999997642 3   3689999875321   22456799999999999999999999999999999


Q ss_pred             eEEEcccCCCCHHhHh
Q 041300          700 FLVYEFLERGSLAAIL  715 (716)
Q Consensus       700 ~lv~Ey~~~GsL~~~l  715 (716)
                      ++|||||++|+|.+++
T Consensus       103 ~iv~Ey~~~g~L~~~~  118 (299)
T d1jpaa_         103 MIITEFMENGSLDSFL  118 (299)
T ss_dssp             EEEEECCTTEEHHHHH
T ss_pred             EEEEEecCCCcceeee
Confidence            9999999999999875

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=3.6e-15  Score=134.36  Aligned_cols=130  Identities=21%  Similarity=0.122  Sum_probs=100.0

Q ss_pred             CCCCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcccccCccCCCccccCCCC
Q 041300           70 FSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSS  149 (716)
Q Consensus        70 ~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  149 (716)
                      ..|.+..++++|||++|+|+.+ +..+..+++|++|+|++|.|+.. + .|..+++|++|++++|.++...+..+..+++
T Consensus        12 ~~~~n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~l-~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~   88 (162)
T d1a9na_          12 AQYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL-D-GFPLLRRLKTLLVNNNRICRIGEGLDQALPD   88 (162)
T ss_dssp             CEEECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE-C-CCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             HhccCcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCcc-C-CcccCcchhhhhcccccccCCCccccccccc
Confidence            3567778899999999999865 56677889999999999999844 3 5888999999999999998766666778999


Q ss_pred             CceeecccccccCCCC-ccccCCcCCcEEEeecccccccc---cccccCCCCCceee
Q 041300          150 IEELFLYSNHLNGSLP-PFLGNLSNIVRLYINNNSLSGSI---LTNIGNLKFLFELD  202 (716)
Q Consensus       150 L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~l~~L~~L~  202 (716)
                      |++|++++|.++.... ..+..+++|++|++++|.++...   +..+..++.|+.||
T Consensus        89 L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          89 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            9999999999875433 56788999999999999887432   11244455444444

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2.1e-15  Score=148.40  Aligned_cols=90  Identities=28%  Similarity=0.388  Sum_probs=76.0

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ++|...+.||+|+||+||+|+. .+|+.||||++......+   ..+.|.+|++++++++|||||++++++.+++..|+|
T Consensus         5 ~dy~~~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~---~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~~~~~~iv   81 (271)
T d1nvra_           5 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVD---CPENIKKEICINKMLNHENVVKFYGHRREGNIQYLF   81 (271)
T ss_dssp             TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC----------CHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             cceEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcch---HHHHHHHHHHHHHhCCCCCEeeEeeeeccCceeEEE
Confidence            4688899999999999999965 468999999997532211   335699999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHhC
Q 041300          703 YEFLERGSLAAILS  716 (716)
Q Consensus       703 ~Ey~~~GsL~~~l~  716 (716)
                      ||||++|+|.++|+
T Consensus        82 mEy~~gg~L~~~l~   95 (271)
T d1nvra_          82 LEYCSGGELFDRIE   95 (271)
T ss_dssp             EECCTTEEGGGGSB
T ss_pred             EeccCCCcHHHHHh
Confidence            99999999999873

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=6.4e-15  Score=147.32  Aligned_cols=92  Identities=21%  Similarity=0.307  Sum_probs=79.1

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccc--hhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeee
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQ--IADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSF  700 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~--~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~  700 (716)
                      +.|...+.||+|+||+||+|+. .+|+.||||++.+......  ....+.|.+|+++|++++|||||++++++.+++..|
T Consensus        10 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~   89 (293)
T d1jksa_          10 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVI   89 (293)
T ss_dssp             GTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             cCEEEeEEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEE
Confidence            4588899999999999999975 5689999999975433221  113577999999999999999999999999999999


Q ss_pred             EEEcccCCCCHHhHh
Q 041300          701 LVYEFLERGSLAAIL  715 (716)
Q Consensus       701 lv~Ey~~~GsL~~~l  715 (716)
                      +|||||++|+|.+++
T Consensus        90 iv~E~~~gg~L~~~i  104 (293)
T d1jksa_          90 LILELVAGGELFDFL  104 (293)
T ss_dssp             EEEECCCSCBHHHHH
T ss_pred             EEEEcCCCccccchh
Confidence            999999999999886

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.1e-15  Score=149.14  Aligned_cols=88  Identities=31%  Similarity=0.465  Sum_probs=74.6

Q ss_pred             hcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      .++|...+.||+|+||+||+|++.  ..||||+++......  ...++|.+|++++++++|||||+++|++. .+..++|
T Consensus         7 ~~~~~~~~~lG~G~fg~Vy~~~~~--~~vAvK~~~~~~~~~--~~~~~~~~E~~~l~~l~HpnIv~~~~~~~-~~~~~lv   81 (276)
T d1uwha_           7 DGQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTP--QQLQAFKNEVGVLRKTRHVNILLFMGYST-APQLAIV   81 (276)
T ss_dssp             TTCCCCCSEEEECSSCEEEEEESS--SEEEEEECCCSSCCT--THHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEE
T ss_pred             cccEEEEEEEeeCCCcEEEEEEEC--CEEEEEEEEcccCCH--HHHHHHHHHHHHHHhCCCCCEeeeeEEEe-ccEEEEE
Confidence            457888999999999999999874  359999997643222  24578999999999999999999999875 4568999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      ||||++|+|.+++
T Consensus        82 ~Ey~~~g~L~~~l   94 (276)
T d1uwha_          82 TQWCEGSSLYHHL   94 (276)
T ss_dssp             EECCCEEEHHHHH
T ss_pred             EecCCCCCHHHHH
Confidence            9999999999987

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=3.9e-15  Score=145.85  Aligned_cols=91  Identities=26%  Similarity=0.467  Sum_probs=77.8

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ++|...+.||+|+||+||+|+. .+++.||||++.+....+. ...+.+.+|++++++++|||||++++++.+++..|+|
T Consensus         6 ~dy~i~~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~-~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~iv   84 (263)
T d2j4za1           6 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKA-GVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLI   84 (263)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHT-TCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hHeEEEEEEecCCCcEEEEEEECCCCcEEEEEEEchHHccCh-HHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCEEEEE
Confidence            4688899999999999999975 4688999999865321111 1346789999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      ||||++|+|.+++
T Consensus        85 mEy~~~g~L~~~l   97 (263)
T d2j4za1          85 LEYAPLGTVYREL   97 (263)
T ss_dssp             EECCTTCBHHHHH
T ss_pred             EeecCCCcHHHHH
Confidence            9999999999876

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=4.9e-15  Score=145.79  Aligned_cols=90  Identities=27%  Similarity=0.548  Sum_probs=75.4

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEe--CCeee
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSH--AQHSF  700 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~--~~~~~  700 (716)
                      ++|...+.||+|+||+||+|+. .+|+.||||++...... + ...+.|.+|++++++++|||||++++++.+  .+..|
T Consensus         4 edy~~~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~-~-~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~   81 (269)
T d2java1           4 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMT-E-AEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLY   81 (269)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCTTSC-H-HHHHHHHHHHHHTTSCCCTTBCCEEEEEEC----CEE
T ss_pred             hhCEEeEEEecCCCeEEEEEEECCCCCEEEEEEEChhhCC-H-HHHHHHHHHHHHHHHCCCCCEeeEEEEEEeCCCCEEE
Confidence            4688899999999999999964 56899999999764322 2 245679999999999999999999999965  45679


Q ss_pred             EEEcccCCCCHHhHh
Q 041300          701 LVYEFLERGSLAAIL  715 (716)
Q Consensus       701 lv~Ey~~~GsL~~~l  715 (716)
                      +|||||++|+|.+++
T Consensus        82 ivmEy~~~g~L~~~i   96 (269)
T d2java1          82 IVMEYCEGGDLASVI   96 (269)
T ss_dssp             EEEECCTTEEHHHHH
T ss_pred             EEEecCCCCcHHHHH
Confidence            999999999999876

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.6e-14  Score=130.13  Aligned_cols=82  Identities=21%  Similarity=0.123  Sum_probs=32.0

Q ss_pred             CCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEEC
Q 041300          357 SQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGL  436 (716)
Q Consensus       357 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  436 (716)
                      ..+++|+|++|+|+ .++..+..+++|+.|+|++|+++..  +.+..+++|++|++++|.++...+..+..+++|+.|++
T Consensus        18 ~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L   94 (162)
T d1a9na_          18 VRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   94 (162)
T ss_dssp             TSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             CcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCcccccccccccccee
Confidence            33444444444443 2233333334444444444444321  12334444444444444444333333333444444444


Q ss_pred             cCCcC
Q 041300          437 SNNQF  441 (716)
Q Consensus       437 s~N~l  441 (716)
                      ++|++
T Consensus        95 ~~N~i   99 (162)
T d1a9na_          95 TNNSL   99 (162)
T ss_dssp             CSCCC
T ss_pred             ccccc
Confidence            44444

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.52  E-value=2.6e-15  Score=154.47  Aligned_cols=236  Identities=20%  Similarity=0.221  Sum_probs=133.1

Q ss_pred             ccccCCCCcEEEccCCcCCCc----cchhhCCCCCCCEEEccCCccccc----------cCCCCCCCCCCCEEEcccCcC
Q 041300          280 SLRNCTSLIRVRLNGNNLTGN----ISEALGLYPNLTFIDLSRNNFYGE----------ISSNWGKCPKLGTLNVSMNNI  345 (716)
Q Consensus       280 ~l~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~Ls~n~l~~~----------~~~~~~~l~~L~~L~L~~n~l  345 (716)
                      .+.+...|+.|+|++|.+...    +...+...++|+.++++++.....          +...+..+++|+.|+|++|.+
T Consensus        26 ~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i  105 (344)
T d2ca6a1          26 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF  105 (344)
T ss_dssp             HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred             HHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccc
Confidence            344445555555555555432    122334455566666655433211          111233456666666666666


Q ss_pred             ccc----CcccccCCCCCCEEEccCCccccccCcc-------------cCCCCCCcEEEccCCccccc----CCcccCCC
Q 041300          346 TGG----IPREIGNMSQLQALDLSLNHIVGEIPKE-------------LGKLNSLTKLILRGNQLTGR----LPTEIGSL  404 (716)
Q Consensus       346 ~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~-------------~~~l~~L~~L~L~~N~l~~~----~~~~~~~l  404 (716)
                      +..    +...+...++|+.|++++|.+.......             ....+.|+.+++++|+++..    +...+...
T Consensus       106 ~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~  185 (344)
T d2ca6a1         106 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH  185 (344)
T ss_dssp             CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred             ccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhh
Confidence            543    2223345566777777766654211110             12345677777777776532    12223456


Q ss_pred             CCCCEEEccCCcCCcc-----CchhhcCcCCCCEEECcCCcCccc----CChhhhCCCCCCEEECCCCcCccccchhc--
Q 041300          405 IELEYLDFSANKFNNS-----VPESLGNLLKLHYLGLSNNQFVLE----LPKELEKLVQLSELDASHNLFGGEIPFQI--  473 (716)
Q Consensus       405 ~~L~~L~Ls~N~l~~~-----~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~ls~N~l~~~~p~~~--  473 (716)
                      +.|+.|+|++|.+...     +...+..+++|+.|+|++|.++..    +...+...++|++|++++|.+++.....+  
T Consensus       186 ~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~  265 (344)
T d2ca6a1         186 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD  265 (344)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHH
T ss_pred             hhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHH
Confidence            6777888888777532     223455667788888888877532    33445667788888888888765433222  


Q ss_pred             --c--CCCCCCEEECcCCcCccc----CCcCCc-CCCCCCEEEccCCcccc
Q 041300          474 --C--SLKSLEKLNLSHNNLSGL----IPNCFE-GMHGLSIIDISDNQLQG  515 (716)
Q Consensus       474 --~--~l~~L~~L~ls~N~l~~~----~~~~~~-~~~~L~~l~ls~N~l~~  515 (716)
                        .  ..+.|++|++++|+|+..    +...+. ..++|+.|++++|++..
T Consensus       266 ~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         266 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             HhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence              2  235788888888887642    122232 46678888888888753

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=4.4e-15  Score=147.21  Aligned_cols=88  Identities=26%  Similarity=0.510  Sum_probs=76.3

Q ss_pred             hcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      .++|...+.||+|+||+||+|..+++..||||++.....     ..++|.+|+.++++++|||||+++|+|. .+..++|
T Consensus        16 ~~~~~i~~~iG~G~fg~Vy~~~~~~~~~vAiK~l~~~~~-----~~~~~~~E~~~l~~l~h~nIv~~~g~~~-~~~~~lv   89 (285)
T d1fmka3          16 RESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-----SPEAFLQEAQVMKKLRHEKLVQLYAVVS-EEPIYIV   89 (285)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSS-----CHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEE
T ss_pred             HHHEEEeeEEeeCCCeEEEEEEECCCCEEEEEEECcccC-----CHHHHHHHHHHHHhcccCCEeEEEEEEe-cCCeEEE
Confidence            356889999999999999999988888899999975321     3467999999999999999999999984 5668999


Q ss_pred             EcccCCCCHHhHhC
Q 041300          703 YEFLERGSLAAILS  716 (716)
Q Consensus       703 ~Ey~~~GsL~~~l~  716 (716)
                      ||||++|+|.++++
T Consensus        90 ~Ey~~~g~l~~~~~  103 (285)
T d1fmka3          90 TEYMSKGSLLDFLK  103 (285)
T ss_dssp             ECCCTTCBHHHHHS
T ss_pred             EEecCCCchhhhhh
Confidence            99999999988763

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=2.5e-14  Score=122.36  Aligned_cols=103  Identities=26%  Similarity=0.327  Sum_probs=76.7

Q ss_pred             cEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcccccCccCCCccccCCCCCceeecccc
Q 041300           79 VHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSN  158 (716)
Q Consensus        79 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  158 (716)
                      |+|||++|+++.. + .+..+++|++|++++|.|+ .+|..|+.+++|++|++++|.++.. | .+..+++|++|++++|
T Consensus         1 R~L~Ls~n~l~~l-~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTVL-C-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSSC-C-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCCCC-c-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCCC
Confidence            5678888888633 3 4777888888888888887 4566777888888888888888743 3 4778888888888888


Q ss_pred             cccCCCC-ccccCCcCCcEEEeecccccc
Q 041300          159 HLNGSLP-PFLGNLSNIVRLYINNNSLSG  186 (716)
Q Consensus       159 ~l~~~~p-~~~~~l~~L~~L~L~~n~l~~  186 (716)
                      .++...+ ..+..+++|++|++++|+++.
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            8875442 567778888888888888764

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=9.1e-15  Score=145.03  Aligned_cols=87  Identities=26%  Similarity=0.410  Sum_probs=71.5

Q ss_pred             CCccccc-ccCCCceEEEEEEcC---CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeee
Q 041300          625 DFDAEYC-IGNGGHGSVYRAELP---SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSF  700 (716)
Q Consensus       625 ~~~~~~~-ig~g~~g~v~~~~~~---~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~  700 (716)
                      +|...++ ||+|+||+||+|.+.   ++..||||+++...   .....++|.+|+++|++++|||||+++|+|.+ +..|
T Consensus         9 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~---~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~-~~~~   84 (285)
T d1u59a_           9 NLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGT---EKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALM   84 (285)
T ss_dssp             GEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSC---CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEE
T ss_pred             CeEECCcEEecccCeEEEEEEEecCCCcEEEEEEEEChhc---CHHHHHHHHHHHHHHHhCCCCCEeeEeeeecc-CeEE
Confidence            4555554 999999999999654   35579999997532   22245789999999999999999999999864 5689


Q ss_pred             EEEcccCCCCHHhHh
Q 041300          701 LVYEFLERGSLAAIL  715 (716)
Q Consensus       701 lv~Ey~~~GsL~~~l  715 (716)
                      +|||||++|+|.+++
T Consensus        85 lvmE~~~~g~L~~~l   99 (285)
T d1u59a_          85 LVMEMAGGGPLHKFL   99 (285)
T ss_dssp             EEEECCTTEEHHHHH
T ss_pred             EEEEeCCCCcHHHHh
Confidence            999999999999986

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1e-14  Score=145.19  Aligned_cols=178  Identities=19%  Similarity=0.177  Sum_probs=85.0

Q ss_pred             CCCEEEccCCccccc-cCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCC-cccccc-CcccCCCCCCcEE
Q 041300          310 NLTFIDLSRNNFYGE-ISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLN-HIVGEI-PKELGKLNSLTKL  386 (716)
Q Consensus       310 ~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L  386 (716)
                      +|++||++++.++.. +...+..+++|++|+++++.+++..+..++.+++|++|+++++ .+++.. ......+++|++|
T Consensus        47 ~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L  126 (284)
T d2astb2          47 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL  126 (284)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred             CCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcccc
Confidence            444555554444322 1222344455555555555554444444455555555555553 333211 1112334555555


Q ss_pred             EccCC-ccccc-CCcccC-CCCCCCEEEccCC--cCCcc-CchhhcCcCCCCEEECcCCc-CcccCChhhhCCCCCCEEE
Q 041300          387 ILRGN-QLTGR-LPTEIG-SLIELEYLDFSAN--KFNNS-VPESLGNLLKLHYLGLSNNQ-FVLELPKELEKLVQLSELD  459 (716)
Q Consensus       387 ~L~~N-~l~~~-~~~~~~-~l~~L~~L~Ls~N--~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~  459 (716)
                      +++++ .++.. +...+. ..+.|+.|+++++  .+++. +...+..+++|++|++++|. ++......+.++++|++|+
T Consensus       127 ~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~  206 (284)
T d2astb2         127 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLS  206 (284)
T ss_dssp             ECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred             ccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEE
Confidence            55553 22211 111111 2345666666543  22221 11223445666666666643 4444555566666666666


Q ss_pred             CCCC-cCccccchhccCCCCCCEEECcCC
Q 041300          460 ASHN-LFGGEIPFQICSLKSLEKLNLSHN  487 (716)
Q Consensus       460 ls~N-~l~~~~p~~~~~l~~L~~L~ls~N  487 (716)
                      +++| .+++.....+.++++|+.|+++++
T Consensus       207 L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         207 LSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            6663 455555555666677777777665

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=4.8e-15  Score=147.20  Aligned_cols=91  Identities=16%  Similarity=0.247  Sum_probs=77.8

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ++|...+.||+|+||+||+|+. .+++.||||++.+...... ...+.+.+|++++++++|||||++++++.+++..|+|
T Consensus         8 ~dy~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~-~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~iv   86 (288)
T d1uu3a_           8 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKE-NKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFG   86 (288)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHT-TCHHHHHHHHHHHHHCCSTTBCCEEEEEECSSEEEEE
T ss_pred             CCCEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccCH-HHHHHHHHHHHHHHHcCCCCeeEEEEEEEECCEEEEE
Confidence            4688999999999999999975 5689999999875321111 1346799999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      ||||++|+|.+++
T Consensus        87 mEy~~gg~L~~~~   99 (288)
T d1uu3a_          87 LSYAKNGELLKYI   99 (288)
T ss_dssp             ECCCTTEEHHHHH
T ss_pred             EEccCCCCHHHhh
Confidence            9999999999875

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=4.7e-15  Score=145.22  Aligned_cols=85  Identities=29%  Similarity=0.535  Sum_probs=72.7

Q ss_pred             cCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC-CeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA-QHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~-~~~~lv  702 (716)
                      ++|...++||+|+||.||+|.+ .|+.||||+++...      ..++|.+|++++++++|||||+++|+|.++ +..++|
T Consensus         7 ~~~~~~~~lG~G~fg~Vy~~~~-~~~~vAvK~i~~~~------~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv   79 (262)
T d1byga_           7 KELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDA------TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIV   79 (262)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEE-TTEEEEEEECCCCC--------HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEE
T ss_pred             HHeEEeEEEecCCCeEEEEEEE-CCeEEEEEEECcHH------HHHHHHHHHHHHHhCCCCCEeeEEEEEEecCCcEEEE
Confidence            4677888999999999999998 47889999996521      346799999999999999999999999654 567999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      |||+++|+|.++|
T Consensus        80 ~ey~~~g~L~~~l   92 (262)
T d1byga_          80 TEYMAKGSLVDYL   92 (262)
T ss_dssp             ECCCTTEEHHHHH
T ss_pred             EeccCCCCHHHHH
Confidence            9999999999987

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.7e-14  Score=143.46  Aligned_cols=88  Identities=24%  Similarity=0.435  Sum_probs=77.2

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ..|...+.||+|+||+||+|.. .+|+.||||++.....    ...+.+.+|++++++++|||||++++++.+++..|+|
T Consensus        20 ~~Y~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~----~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv   95 (293)
T d1yhwa1          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQ----PKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVV   95 (293)
T ss_dssp             TTBCSCEECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGC----SCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred             cccEEEEEEecCcCcEEEEEEECCCCCEEEEEEEecccC----hHHHHHHHHHHHHHhCCCCCEeeEeEEEEECCEEEEE
Confidence            4688899999999999999974 5689999999875321    1346799999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      ||||++|+|.+++
T Consensus        96 mEy~~gg~L~~~~  108 (293)
T d1yhwa1          96 MEYLAGGSLTDVV  108 (293)
T ss_dssp             EECCTTCBHHHHH
T ss_pred             EEecCCCcHHHHh
Confidence            9999999999865

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=8.4e-15  Score=146.97  Aligned_cols=89  Identities=22%  Similarity=0.350  Sum_probs=73.4

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      +.|...++||+|+||+||+|+. .+++.||||++.......   ..+.+.+|+++|++++|||||++++++.+++..|+|
T Consensus         9 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~---~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~lv   85 (307)
T d1a06a_           9 DIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEG---KEGSMENEIAVLHKIKHPNIVALDDIYESGGHLYLI   85 (307)
T ss_dssp             GTEEEEEESBSGGGGGEEEEEETTTCCEEEEEEEEC-------------CHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             cceEEEEEEeeccCeEEEEEEECCCCCEEEEEEEchHHhhh---HHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence            4588899999999999999965 468999999997643221   235688999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      ||||++|+|.++|
T Consensus        86 mE~~~gg~L~~~l   98 (307)
T d1a06a_          86 MQLVSGGELFDRI   98 (307)
T ss_dssp             ECCCCSCBHHHHH
T ss_pred             EeccCCCcHHHhh
Confidence            9999999999886

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=7.9e-15  Score=148.66  Aligned_cols=90  Identities=32%  Similarity=0.491  Sum_probs=78.7

Q ss_pred             hcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL  701 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l  701 (716)
                      .++|...+.||+|+||+||+|+. .+|+.||||+++....  . ...+.+.+|+.++++++|||||+++++|.+++..|+
T Consensus         5 ~d~y~~~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~--~-~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~i   81 (322)
T d1s9ja_           5 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIK--P-AIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISI   81 (322)
T ss_dssp             GGGEEEEEEEECCSSCCEEEEEETTTTEEEEEEEEECCCC--T-THHHHHHHHGGGGGGCCCTTBCCEEEEEECSSEEEE
T ss_pred             ccCCEEEEEEecCCCeEEEEEEECCCCcEEEEEEEChhhC--H-HHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEE
Confidence            45788899999999999999974 5689999999975321  1 245679999999999999999999999999999999


Q ss_pred             EEcccCCCCHHhHh
Q 041300          702 VYEFLERGSLAAIL  715 (716)
Q Consensus       702 v~Ey~~~GsL~~~l  715 (716)
                      |||||++|+|.+++
T Consensus        82 VmEy~~gg~L~~~l   95 (322)
T d1s9ja_          82 CMEHMDGGSLDQVL   95 (322)
T ss_dssp             EEECCTTEEHHHHH
T ss_pred             EEEcCCCCcHHHHH
Confidence            99999999999886

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.1e-14  Score=145.07  Aligned_cols=88  Identities=20%  Similarity=0.250  Sum_probs=77.4

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ++|...+.||+|+||+||+|.. .+++.||||+++...     .....+.+|+++|++++|||||++++++.+++..|+|
T Consensus         5 ~rY~i~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~~-----~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~lv   79 (321)
T d1tkia_           5 EKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG-----TDQVLVKKEISILNIARHRNILHLHESFESMEELVMI   79 (321)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT-----HHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEE
T ss_pred             cceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEcCCc-----ccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEE
Confidence            4688899999999999999964 468899999997531     1345688999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHhC
Q 041300          703 YEFLERGSLAAILS  716 (716)
Q Consensus       703 ~Ey~~~GsL~~~l~  716 (716)
                      ||||++|+|.++++
T Consensus        80 mE~~~gg~L~~~i~   93 (321)
T d1tkia_          80 FEFISGLDIFERIN   93 (321)
T ss_dssp             ECCCCCCBHHHHHT
T ss_pred             EecCCCCcHHHHHH
Confidence            99999999999873

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.49  E-value=5.8e-15  Score=151.76  Aligned_cols=187  Identities=21%  Similarity=0.187  Sum_probs=118.0

Q ss_pred             hCCCCCCCEEEccCCccccc----cCCCCCCCCCCCEEEcccCcCcccCcc-------------cccCCCCCCEEEccCC
Q 041300          305 LGLYPNLTFIDLSRNNFYGE----ISSNWGKCPKLGTLNVSMNNITGGIPR-------------EIGNMSQLQALDLSLN  367 (716)
Q Consensus       305 ~~~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~-------------~~~~l~~L~~L~L~~n  367 (716)
                      +...++|++|+|++|.++..    +...+..+++|+.|++++|.+......             .....+.|+.+++++|
T Consensus        89 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n  168 (344)
T d2ca6a1          89 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN  168 (344)
T ss_dssp             HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred             HhhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccc
Confidence            44556677777777666542    122233456677777777765421110             1134567788888887


Q ss_pred             cccccc----CcccCCCCCCcEEEccCCccccc-----CCcccCCCCCCCEEEccCCcCCcc----CchhhcCcCCCCEE
Q 041300          368 HIVGEI----PKELGKLNSLTKLILRGNQLTGR-----LPTEIGSLIELEYLDFSANKFNNS----VPESLGNLLKLHYL  434 (716)
Q Consensus       368 ~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~-----~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L  434 (716)
                      .+....    ...+...++|+.|+|++|+++..     +...+..+++|+.|+|++|.++..    +...+..+++|++|
T Consensus       169 ~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L  248 (344)
T d2ca6a1         169 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL  248 (344)
T ss_dssp             CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred             cccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhh
Confidence            775322    22345567788888888887532     234466778888888888887543    23456677888888


Q ss_pred             ECcCCcCcccCCh----hhhC--CCCCCEEECCCCcCcccc----chhc-cCCCCCCEEECcCCcCcc
Q 041300          435 GLSNNQFVLELPK----ELEK--LVQLSELDASHNLFGGEI----PFQI-CSLKSLEKLNLSHNNLSG  491 (716)
Q Consensus       435 ~Ls~N~l~~~~~~----~~~~--l~~L~~L~ls~N~l~~~~----p~~~-~~l~~L~~L~ls~N~l~~  491 (716)
                      +|++|.+...-..    .+..  ...|++||+++|.++...    ...+ .+.++|+.|++++|++..
T Consensus       249 ~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         249 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             hhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            8888888644222    2322  357889999999886532    2223 256789999999998864

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=99.49  E-value=2.2e-14  Score=146.45  Aligned_cols=88  Identities=23%  Similarity=0.425  Sum_probs=77.9

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ++|...+.||+|+||+||+|+. .+|+.||||++....   . ...+.+.+|++++++++|||||++++++.+++..|+|
T Consensus        26 ~~Y~i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~---~-~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv  101 (350)
T d1koaa2          26 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPH---E-SDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMI  101 (350)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECCCS---H-HHHHHHHHHHHHHHHTCCTTBCCEEEEEEETTEEEEE
T ss_pred             cCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEcccc---h-hhHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence            4688999999999999999964 568999999997532   1 2456799999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      ||||++|+|.+++
T Consensus       102 mE~~~gg~L~~~l  114 (350)
T d1koaa2         102 YEFMSGGELFEKV  114 (350)
T ss_dssp             ECCCCSCBHHHHH
T ss_pred             EEcCCCCCHHHHH
Confidence            9999999999887

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=9.9e-15  Score=145.24  Aligned_cols=213  Identities=19%  Similarity=0.200  Sum_probs=125.9

Q ss_pred             CCCCcEEEccCCcCCCc-cchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccC-cCccc-CcccccCCCCCC
Q 041300          284 CTSLIRVRLNGNNLTGN-ISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMN-NITGG-IPREIGNMSQLQ  360 (716)
Q Consensus       284 l~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~  360 (716)
                      ..+|++|+++++.++.. ....+..+++|++|+++++.+++..+..+..+++|++|+++++ .++.. +.....++++|+
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~  124 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  124 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcc
Confidence            34666666666665533 2334566667777777777666555555666677777777764 34422 122234567777


Q ss_pred             EEEccCC-ccccc-cCcccC-CCCCCcEEEccCCc--cccc-CCcccCCCCCCCEEEccCC-cCCccCchhhcCcCCCCE
Q 041300          361 ALDLSLN-HIVGE-IPKELG-KLNSLTKLILRGNQ--LTGR-LPTEIGSLIELEYLDFSAN-KFNNSVPESLGNLLKLHY  433 (716)
Q Consensus       361 ~L~L~~n-~l~~~-~~~~~~-~l~~L~~L~L~~N~--l~~~-~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~  433 (716)
                      +|+++++ .+++. ....+. ..++|+.|+++++.  ++.. +.....++++|++|++++| .+++.....+.++++|++
T Consensus       125 ~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~  204 (284)
T d2astb2         125 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH  204 (284)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred             ccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCE
Confidence            7777774 33321 111222 23567778777642  3321 1222345778888888875 466666677778888888


Q ss_pred             EECcCC-cCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCCcC
Q 041300          434 LGLSNN-QFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEG  499 (716)
Q Consensus       434 L~Ls~N-~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~  499 (716)
                      |++++| .++......+..+++|+.|+++++--.+.++.....+++|+   +..++++...+..+..
T Consensus       205 L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~---i~~~~ls~~~~~~~~~  268 (284)
T d2astb2         205 LSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ---INCSHFTTIARPTIGN  268 (284)
T ss_dssp             EECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSE---ESCCCSCCTTCSSCSS
T ss_pred             EECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCcccc---ccCccCCCCCCCccCc
Confidence            888884 56655556677788888888887722222333334455554   4667777665555543

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.3e-14  Score=140.88  Aligned_cols=88  Identities=25%  Similarity=0.383  Sum_probs=72.8

Q ss_pred             CcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEe----CCeee
Q 041300          626 FDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSH----AQHSF  700 (716)
Q Consensus       626 ~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~----~~~~~  700 (716)
                      |...++||+|+||+||+|.. .+++.||||++......  ....+.|.+|+++|++++|||||++++++.+    ....|
T Consensus        11 ~~~~~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~~--~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~~~   88 (270)
T d1t4ha_          11 LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLT--KSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIV   88 (270)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSC--HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEE
T ss_pred             EEeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCC--HHHHHHHHHHHHHHHhCCCCCeeeEEEEEeeccccCCEEE
Confidence            35667899999999999975 46889999998764322  1245679999999999999999999999865    34579


Q ss_pred             EEEcccCCCCHHhHh
Q 041300          701 LVYEFLERGSLAAIL  715 (716)
Q Consensus       701 lv~Ey~~~GsL~~~l  715 (716)
                      +|||||++|+|.+++
T Consensus        89 ivmE~~~~g~L~~~l  103 (270)
T d1t4ha_          89 LVTELMTSGTLKTYL  103 (270)
T ss_dssp             EEEECCCSCBHHHHH
T ss_pred             EEEeCCCCCcHHHHH
Confidence            999999999999886

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.5e-14  Score=142.94  Aligned_cols=83  Identities=29%  Similarity=0.449  Sum_probs=67.1

Q ss_pred             ccccCCCceEEEEEEcCC---CCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEccc
Q 041300          630 YCIGNGGHGSVYRAELPS---GEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFL  706 (716)
Q Consensus       630 ~~ig~g~~g~v~~~~~~~---~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  706 (716)
                      +.||+|+||+||+|.+.+   ++.||||+++.... +. ...++|.+|+++|++++|||||+++|+|.+ +..++|||||
T Consensus        13 k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~-~~-~~~~~~~~E~~il~~l~HpnIv~~~g~~~~-~~~~lvmE~~   89 (277)
T d1xbba_          13 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEAN-DP-ALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMA   89 (277)
T ss_dssp             EEEEECSSEEEEEEEEECSSSEEEEEEEEEC------C-HHHHHHHHHHHHHHTCCCTTBCCEEEEEES-SSEEEEEECC
T ss_pred             CCcccCCCeEEEEEEEccCCcCeEEEEEEEChhhC-CH-HHHHHHHHHHHHHHhCCCCCCceEEEEecc-CCEEEEEEcC
Confidence            579999999999997543   46899999975322 22 245689999999999999999999999864 5578999999


Q ss_pred             CCCCHHhHh
Q 041300          707 ERGSLAAIL  715 (716)
Q Consensus       707 ~~GsL~~~l  715 (716)
                      ++|+|.+++
T Consensus        90 ~~g~L~~~l   98 (277)
T d1xbba_          90 ELGPLNKYL   98 (277)
T ss_dssp             TTEEHHHHH
T ss_pred             CCCcHHHHH
Confidence            999999886

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.2e-14  Score=144.32  Aligned_cols=87  Identities=22%  Similarity=0.426  Sum_probs=76.1

Q ss_pred             CCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          625 DFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      .|...+.||+|+||+||+|+. .+++.||||++..... .   ..+.|.+|+++|++++|||||++++++.+++..|+||
T Consensus        13 ~Y~i~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~-~---~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lvm   88 (288)
T d2jfla1          13 FWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSE-E---ELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILI   88 (288)
T ss_dssp             TEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSSS-G---GGGGTHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             CeEEeEEEeeCCCcEEEEEEECCCCeEEEEEEECcCCH-H---HHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCeEEEEE
Confidence            577888999999999999975 4689999999975321 1   3457999999999999999999999999999999999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      |||++|+|.+++
T Consensus        89 Ey~~~g~L~~~~  100 (288)
T d2jfla1          89 EFCAGGAVDAVM  100 (288)
T ss_dssp             ECCTTEEHHHHH
T ss_pred             ecCCCCcHHHHH
Confidence            999999999875

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.48  E-value=1.7e-14  Score=144.80  Aligned_cols=90  Identities=28%  Similarity=0.414  Sum_probs=76.7

Q ss_pred             CCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          625 DFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      .|...+.||+|+||+||+|+ ..+++.||||++........ ...+.|.+|+++|++++|||||++++++.+++..|+||
T Consensus        16 ~y~~l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~-~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv~   94 (309)
T d1u5ra_          16 LFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSN-EKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM   94 (309)
T ss_dssp             HEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCHH-HHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             hcEeeEEEecCCCeEEEEEEECCCCcEEEEEEEchhhccCH-HHHHHHHHHHHHHHHCCCCCEeeEEEEEEECCEEEEEE
Confidence            48888899999999999996 45788999999976433222 24567999999999999999999999999999999999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      |||++|+|..++
T Consensus        95 E~~~~g~l~~~~  106 (309)
T d1u5ra_          95 EYCLGSASDLLE  106 (309)
T ss_dssp             ECCSEEHHHHHH
T ss_pred             EecCCCchHHHH
Confidence            999999987653

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.47  E-value=1.6e-13  Score=117.14  Aligned_cols=101  Identities=24%  Similarity=0.317  Sum_probs=47.0

Q ss_pred             EEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCc
Q 041300          337 TLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANK  416 (716)
Q Consensus       337 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~  416 (716)
                      .|+|++|+++.. + .+..+++|++|++++|+|+ .+|..+..+++|+.|++++|++++ +| .+..+++|++|++++|+
T Consensus         2 ~L~Ls~n~l~~l-~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           2 VLHLAHKDLTVL-C-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             EEECTTSCCSSC-C-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCCCCC-c-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCc
Confidence            344444444422 2 2444455555555555554 334444445555555555555542 22 24455555555555555


Q ss_pred             CCccC-chhhcCcCCCCEEECcCCcCc
Q 041300          417 FNNSV-PESLGNLLKLHYLGLSNNQFV  442 (716)
Q Consensus       417 l~~~~-~~~~~~l~~L~~L~Ls~N~l~  442 (716)
                      +.+.. ...+..+++|+.|++++|+++
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            54322 133444455555555555544

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.5e-14  Score=145.65  Aligned_cols=89  Identities=29%  Similarity=0.561  Sum_probs=73.4

Q ss_pred             cCCcccccccCCCceEEEEEEcCC-CC--EEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeCCee
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELPS-GE--VVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHS  699 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~~-~~--~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~~~~  699 (716)
                      ++|...++||+|+||+||+|.+.+ +.  .||||+++.....   ...++|.+|+++|+++ +|||||+++|+|.+++..
T Consensus        10 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~   86 (309)
T d1fvra_          10 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASK---DDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYL   86 (309)
T ss_dssp             GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC---------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEE
T ss_pred             HHcEEEEEEeeCCCcEEEEEEECCCCeEEEEEEEEECcccCh---HHHHHHHHHHHHHHhccCCCCEeeEEEEEecCCee
Confidence            468888999999999999997653 43  5788888643221   1346799999999998 799999999999999999


Q ss_pred             eEEEcccCCCCHHhHh
Q 041300          700 FLVYEFLERGSLAAIL  715 (716)
Q Consensus       700 ~lv~Ey~~~GsL~~~l  715 (716)
                      ++|||||++|+|.++|
T Consensus        87 ~iV~ey~~~g~L~~~l  102 (309)
T d1fvra_          87 YLAIEYAPHGNLLDFL  102 (309)
T ss_dssp             EEEECCCTTCBHHHHH
T ss_pred             EEEEEecCCCcHHHHH
Confidence            9999999999999987

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=99.47  E-value=3.5e-14  Score=145.05  Aligned_cols=88  Identities=20%  Similarity=0.351  Sum_probs=77.2

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      +.|...+.||+|+||+||+|.. .+|+.||||++....   . ...+.+.+|++++++++|||||++++++.+++..|+|
T Consensus        29 d~Y~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~---~-~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv  104 (352)
T d1koba_          29 DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPY---P-LDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLI  104 (352)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS---H-HHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEE
T ss_pred             cceEEEEEEecCCCeEEEEEEECCCCCEEEEEEECCcc---h-hHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence            4588899999999999999964 579999999987532   1 2446789999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      ||||++|+|.+++
T Consensus       105 mE~~~gg~L~~~~  117 (352)
T d1koba_         105 LEFLSGGELFDRI  117 (352)
T ss_dssp             EECCCCCBHHHHT
T ss_pred             EEcCCCChHHHHH
Confidence            9999999998875

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.45  E-value=2.6e-14  Score=143.39  Aligned_cols=96  Identities=28%  Similarity=0.468  Sum_probs=81.3

Q ss_pred             HHHHHhhcCCcccccccCCCceEEEEEEcC------CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccc
Q 041300          617 DEIVRETNDFDAEYCIGNGGHGSVYRAELP------SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY  690 (716)
Q Consensus       617 ~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~------~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~  690 (716)
                      .+++...++|...+.||+|+||+||+|++.      +++.||||++....   .....++|.+|++++++++|||||+++
T Consensus         6 ~~~e~p~~~~~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~---~~~~~~~~~~E~~il~~l~h~niv~~~   82 (301)
T d1lufa_           6 LSLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEA---SADMQADFQREAALMAEFDNPNIVKLL   82 (301)
T ss_dssp             HHTBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTC---CHHHHHHHHHHHHHHHTCCCTTBCCEE
T ss_pred             hhccCCHHHcEEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhc---ChHHHHHHHHHHHHHHhcCCCCcccce
Confidence            344445678999999999999999999753      35689999997532   122456799999999999999999999


Q ss_pred             eEEEeCCeeeEEEcccCCCCHHhHh
Q 041300          691 GFCSHAQHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       691 g~~~~~~~~~lv~Ey~~~GsL~~~l  715 (716)
                      ++|..++..++|||||++|+|.+++
T Consensus        83 ~~~~~~~~~~~v~e~~~~g~L~~~l  107 (301)
T d1lufa_          83 GVCAVGKPMCLLFEYMAYGDLNEFL  107 (301)
T ss_dssp             EEECSSSSCEEEEECCTTCBHHHHH
T ss_pred             eeeccCCceEEEEEecCCCcHHHHH
Confidence            9999999999999999999999987

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.44  E-value=6.9e-14  Score=137.94  Aligned_cols=92  Identities=23%  Similarity=0.344  Sum_probs=77.8

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccc-----hhhHHHHHHHHHHHhcCC-CCCccccceEEEeC
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQ-----IADQKEFLTEVQALTEIR-HRNIVKFYGFCSHA  696 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~-----~~~~~~~~~ei~~l~~l~-H~niv~l~g~~~~~  696 (716)
                      ++|...+.||+|+||+||+|+. .+|+.||||++++......     ....+.+.+|+.++++++ |||||++++++.++
T Consensus         3 ~~y~~~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~   82 (277)
T d1phka_           3 ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETN   82 (277)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEECS
T ss_pred             ccCEEceEEecCcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeecccC
Confidence            4688899999999999999964 5789999999976432211     112346889999999997 99999999999999


Q ss_pred             CeeeEEEcccCCCCHHhHh
Q 041300          697 QHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       697 ~~~~lv~Ey~~~GsL~~~l  715 (716)
                      +..|+|||||++|+|.++|
T Consensus        83 ~~~~ivmE~~~~g~L~~~l  101 (277)
T d1phka_          83 TFFFLVFDLMKKGELFDYL  101 (277)
T ss_dssp             SEEEEEEECCTTCBHHHHH
T ss_pred             cceEEEEEcCCCchHHHHH
Confidence            9999999999999999887

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.5e-14  Score=145.63  Aligned_cols=91  Identities=24%  Similarity=0.478  Sum_probs=77.4

Q ss_pred             hhcCCcccccccCCCceEEEEEEcC------CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEe
Q 041300          622 ETNDFDAEYCIGNGGHGSVYRAELP------SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSH  695 (716)
Q Consensus       622 ~~~~~~~~~~ig~g~~g~v~~~~~~------~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~  695 (716)
                      ..++|...+.||+|+||+||+|.+.      +++.||||+++...   .......|.+|++++++++|||||+++|+|..
T Consensus        18 ~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~---~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~   94 (308)
T d1p4oa_          18 AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAA---SMRERIEFLNEASVMKEFNCHHVVRLLGVVSQ   94 (308)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTS---CHHHHHHHHHHHHHGGGCCCTTBCCEEEEECS
T ss_pred             cHHHeEEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECccc---ChHHHHHHHHHHHHHHHcCCCCEeeeeeEEec
Confidence            3457888899999999999999753      25789999997532   22244679999999999999999999999999


Q ss_pred             CCeeeEEEcccCCCCHHhHh
Q 041300          696 AQHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       696 ~~~~~lv~Ey~~~GsL~~~l  715 (716)
                      ++..++|||||++|+|.+++
T Consensus        95 ~~~~~lv~e~~~~g~l~~~~  114 (308)
T d1p4oa_          95 GQPTLVIMELMTRGDLKSYL  114 (308)
T ss_dssp             SSSCEEEEECCTTCBHHHHH
T ss_pred             CCceeEEEeecCCCCHHHHH
Confidence            99999999999999999876

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.44  E-value=3.8e-14  Score=142.76  Aligned_cols=91  Identities=24%  Similarity=0.402  Sum_probs=77.6

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ++|...+.||+|+||+||+|+. .+|+.||||++++...... ...+.+.+|+.++++++|||||++++++.+++..|+|
T Consensus         4 ~dy~i~~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~~-~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv   82 (316)
T d1fota_           4 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRL-KQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMI   82 (316)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHT-TCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEE
T ss_pred             hHeEEEEEEecCcCcEEEEEEECCCCCEEEEEEEchHHccCH-HHHHHHHHHHHHHHhccCcChhheeeeEeeCCeeeeE
Confidence            4688899999999999999974 5689999999975321111 1346799999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      ||||++|+|.+++
T Consensus        83 mE~~~gg~l~~~~   95 (316)
T d1fota_          83 MDYIEGGELFSLL   95 (316)
T ss_dssp             ECCCCSCBHHHHH
T ss_pred             eeecCCccccccc
Confidence            9999999998765

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=5e-14  Score=139.86  Aligned_cols=89  Identities=26%  Similarity=0.494  Sum_probs=75.1

Q ss_pred             cCCcccccccCCCceEEEEEEcCCC-----CEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCe
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELPSG-----EVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQH  698 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~~~-----~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~  698 (716)
                      .+|...++||+|+||+||+|.++..     ..||||++....  .. ....+|.+|++++++++|||||+++|+|.+.+.
T Consensus         7 ~~~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~--~~-~~~~~~~~E~~il~~l~H~nIv~~~g~~~~~~~   83 (283)
T d1mqba_           7 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGY--TE-KQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKP   83 (283)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTC--CH-HHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSS
T ss_pred             HHeEeeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECccc--Ch-HHHHHHHHHHHHHHhcCCCCEeeeeEEEecCCc
Confidence            4688899999999999999976532     379999997532  12 234679999999999999999999999999999


Q ss_pred             eeEEEcccCCCCHHhHh
Q 041300          699 SFLVYEFLERGSLAAIL  715 (716)
Q Consensus       699 ~~lv~Ey~~~GsL~~~l  715 (716)
                      .++|||||++|++.+++
T Consensus        84 ~~~v~e~~~~~~l~~~~  100 (283)
T d1mqba_          84 MMIITEYMENGALDKFL  100 (283)
T ss_dssp             EEEEEECCTTEEHHHHH
T ss_pred             eEEEEEecccCcchhhh
Confidence            99999999999998764

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.8e-14  Score=145.30  Aligned_cols=91  Identities=25%  Similarity=0.459  Sum_probs=77.6

Q ss_pred             hhcCCcccccccCCCceEEEEEEc------CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEE
Q 041300          622 ETNDFDAEYCIGNGGHGSVYRAEL------PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCS  694 (716)
Q Consensus       622 ~~~~~~~~~~ig~g~~g~v~~~~~------~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~  694 (716)
                      ..++|...++||+|+||.||+|++      .+++.||||+++...   ......+|.+|+.+++++ +|||||+++|+|.
T Consensus        21 ~~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~---~~~~~~~~~~E~~~~~~l~~HpnIv~~~g~~~   97 (311)
T d1t46a_          21 PRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSA---HLTEREALMSELKVLSYLGNHMNIVNLLGACT   97 (311)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTC---CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred             CHHHeEEeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECccc---CHHHHHHHHHHHHHHHhccCCCCEEEEEEEEe
Confidence            345788899999999999999974      245689999997632   222456799999999999 6999999999999


Q ss_pred             eCCeeeEEEcccCCCCHHhHh
Q 041300          695 HAQHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       695 ~~~~~~lv~Ey~~~GsL~~~l  715 (716)
                      +++..++|||||++|+|.+++
T Consensus        98 ~~~~~~lvmE~~~~g~l~~~l  118 (311)
T d1t46a_          98 IGGPTLVITEYCCYGDLLNFL  118 (311)
T ss_dssp             SSSSCEEEEECCTTEEHHHHH
T ss_pred             eCCEEEEEEEcCCCCCHHHHH
Confidence            999999999999999999886

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=4.4e-14  Score=143.32  Aligned_cols=91  Identities=23%  Similarity=0.291  Sum_probs=78.1

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ++|...++||+|+||+||+|+. .+|+.||||++.+...... ...+.+.+|+.+|++++|||||++++++.+++..|+|
T Consensus         5 ~dy~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~~~~-~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~iv   83 (337)
T d1o6la_           5 NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAK-DEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFV   83 (337)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHT-TCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEE
T ss_pred             HhcEEEEEEecCcCeEEEEEEECCCCCEEEEEEEchhhccCH-HHHHHHHHHHHHHHhCCCCCEEEEEeeeccccccccc
Confidence            4688999999999999999964 5789999999975321111 1346789999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      ||||++|+|.+++
T Consensus        84 ~ey~~gg~L~~~~   96 (337)
T d1o6la_          84 MEYANGGELFFHL   96 (337)
T ss_dssp             EECCTTCBHHHHH
T ss_pred             eeccCCCchhhhh
Confidence            9999999999876

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.43  E-value=7.7e-14  Score=138.21  Aligned_cols=91  Identities=24%  Similarity=0.329  Sum_probs=76.7

Q ss_pred             cCCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC----e
Q 041300          624 NDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ----H  698 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~----~  698 (716)
                      +.|...+.||+|+||+||+|+ ..+|+.||||+++.....+.. ..+.|.+|++++++++|||||++++++...+    .
T Consensus         7 drY~i~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~-~~~~~~~E~~~l~~~~hpniv~~~~~~~~~~~~~~~   85 (277)
T d1o6ya_           7 DRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPS-FYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL   85 (277)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTTTCHH-HHHHHHHHHHHHHTCCCTTBCCEEEEEEEECSSSEE
T ss_pred             ceeEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEchhhccCHH-HHHHHHHHHHHHHhcCCCCCCcccceeeeccCCCce
Confidence            458889999999999999996 457899999999864433322 4567999999999999999999999997754    3


Q ss_pred             eeEEEcccCCCCHHhHh
Q 041300          699 SFLVYEFLERGSLAAIL  715 (716)
Q Consensus       699 ~~lv~Ey~~~GsL~~~l  715 (716)
                      .|+|||||++|+|.+++
T Consensus        86 ~~lvmE~~~g~~L~~~~  102 (277)
T d1o6ya_          86 PYIVMEYVDGVTLRDIV  102 (277)
T ss_dssp             EEEEEECCCEEEHHHHH
T ss_pred             EEEEEECCCCCEehhhh
Confidence            78999999999999875

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=9.3e-14  Score=139.58  Aligned_cols=84  Identities=26%  Similarity=0.515  Sum_probs=69.9

Q ss_pred             cccccCCCceEEEEEEcCCC----CEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEe-CCeeeEEE
Q 041300          629 EYCIGNGGHGSVYRAELPSG----EVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSH-AQHSFLVY  703 (716)
Q Consensus       629 ~~~ig~g~~g~v~~~~~~~~----~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~-~~~~~lv~  703 (716)
                      .++||+|+||+||+|.+.++    ..||||+++...   .....++|.+|+++|++++|||||+++|+|.+ ++..++||
T Consensus        32 ~~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~---~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~  108 (311)
T d1r0pa_          32 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRIT---DIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVL  108 (311)
T ss_dssp             EEEEEEETTEEEEEEEECC----CEEEEEEEECCCC---CHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEETTTEEEEEE
T ss_pred             ceEEeecCCeEEEEEEEECCCCEEEEEEEEEECccc---CHHHHHHHHHHHHHHHhCCCCCEeEEeEEEEecCCceEEEE
Confidence            57899999999999986432    368999997522   22245789999999999999999999999876 45789999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      |||++|+|.+++
T Consensus       109 E~~~~g~l~~~~  120 (311)
T d1r0pa_         109 PYMKHGDLRNFI  120 (311)
T ss_dssp             ECCTTCBHHHHH
T ss_pred             EEeecCchhhhh
Confidence            999999999875

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=5e-14  Score=142.13  Aligned_cols=91  Identities=22%  Similarity=0.389  Sum_probs=75.3

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHh-cCCCCCccccceEEEeCCeeeE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALT-EIRHRNIVKFYGFCSHAQHSFL  701 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~-~l~H~niv~l~g~~~~~~~~~l  701 (716)
                      ++|...++||+|+||+||+|+. .+++.||||++++...... ...+.+.+|+.++. .++|||||++++++.+++..|+
T Consensus         2 ddy~i~~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~~~-~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~~~~~yi   80 (320)
T d1xjda_           2 EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMD-DDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFF   80 (320)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHT-TCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEE
T ss_pred             CCeEEeeEEecCCCcEEEEEEECCCCCEEEEEEEchhhccCh-HHHHHHHHHHHHHHHhCCCCcEEEEEEEEccCCceeE
Confidence            4688899999999999999964 4689999999975321111 13456778888765 6899999999999999999999


Q ss_pred             EEcccCCCCHHhHh
Q 041300          702 VYEFLERGSLAAIL  715 (716)
Q Consensus       702 v~Ey~~~GsL~~~l  715 (716)
                      |||||++|+|.+++
T Consensus        81 vmEy~~~g~L~~~i   94 (320)
T d1xjda_          81 VMEYLNGGDLMYHI   94 (320)
T ss_dssp             EEECCTTCBHHHHH
T ss_pred             EEeecCCCcHHHHh
Confidence            99999999999987

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=6.7e-14  Score=141.85  Aligned_cols=90  Identities=24%  Similarity=0.487  Sum_probs=74.1

Q ss_pred             hcCCcccccccCCCceEEEEEEcCC-C-----CEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEe
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELPS-G-----EVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSH  695 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~~-~-----~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~  695 (716)
                      .++|...++||+|+||+||+|+... +     ..||||++......   .....|.+|+.++.++ +|||||+++|+|.+
T Consensus        36 ~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~---~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~  112 (325)
T d1rjba_          36 RENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADS---SEREALMSELKMMTQLGSHENIVNLLGACTL  112 (325)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC---------CHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred             HHHeEEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccCH---HHHHHHHHHHHHHHHhcCCCcEeEEEEEEee
Confidence            3578889999999999999997532 2     36999998653211   1346799999999998 89999999999999


Q ss_pred             CCeeeEEEcccCCCCHHhHh
Q 041300          696 AQHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       696 ~~~~~lv~Ey~~~GsL~~~l  715 (716)
                      .+..|+|||||++|+|.++|
T Consensus       113 ~~~~~lv~Ey~~~g~L~~~l  132 (325)
T d1rjba_         113 SGPIYLIFEYCCYGDLLNYL  132 (325)
T ss_dssp             SSSCEEEEECCTTCBHHHHH
T ss_pred             CCeEEEEEEcCCCCcHHHHH
Confidence            99999999999999999987

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.3e-13  Score=135.88  Aligned_cols=90  Identities=31%  Similarity=0.466  Sum_probs=65.7

Q ss_pred             cCCcccccccCCCceEEEEEEcC--CC--CEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCee
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP--SG--EVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHS  699 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~--~~--~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~  699 (716)
                      ++|...+.||+|+||+||+|++.  ++  ..||||++.+....... ..++|.+|++++++++|||||+++|+|.+ +..
T Consensus         8 ~d~~~~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~-~~~~~~~Ei~~l~~l~H~nIv~~~g~~~~-~~~   85 (273)
T d1u46a_           8 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPE-AMDDFIREVNAMHSLDHRNLIRLYGVVLT-PPM   85 (273)
T ss_dssp             GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CH-HHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSC
T ss_pred             HHeEEEEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCCHH-HHHHHHHHHHHHHhCCCCCEEEEEEEEee-cch
Confidence            46888899999999999999753  23  37899999764433332 45689999999999999999999999965 467


Q ss_pred             eEEEcccCCCCHHhHh
Q 041300          700 FLVYEFLERGSLAAIL  715 (716)
Q Consensus       700 ~lv~Ey~~~GsL~~~l  715 (716)
                      ++|||||++|++.+++
T Consensus        86 ~lv~e~~~~~~l~~~~  101 (273)
T d1u46a_          86 KMVTELAPLGSLLDRL  101 (273)
T ss_dssp             EEEEECCTTCBHHHHH
T ss_pred             heeeeeecCcchhhhh
Confidence            8999999999998765

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=2.3e-13  Score=136.30  Aligned_cols=85  Identities=32%  Similarity=0.525  Sum_probs=68.5

Q ss_pred             cCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHH--HHHHHHhcCCCCCccccceEEEeCC----
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFL--TEVQALTEIRHRNIVKFYGFCSHAQ----  697 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~--~ei~~l~~l~H~niv~l~g~~~~~~----  697 (716)
                      +.|...+.||+|+||.||+|++ +|+.||||++...       ..+++.  +|+..+..++|||||+++|+|.+.+    
T Consensus         3 ~~~~l~~~iG~G~fg~Vy~~~~-~g~~vAvK~~~~~-------~~~~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~~~~~   74 (303)
T d1vjya_           3 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSR-------EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWT   74 (303)
T ss_dssp             GGEEEEEEEECCSSSEEEEEEE-TTEEEEEEEECGG-------GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSE
T ss_pred             cEEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECcc-------chhHHHHHHHHHHHhhCCCCcCcceEEEEEeCCCcce
Confidence            4577788999999999999987 6789999998642       123344  4455556789999999999998754    


Q ss_pred             eeeEEEcccCCCCHHhHhC
Q 041300          698 HSFLVYEFLERGSLAAILS  716 (716)
Q Consensus       698 ~~~lv~Ey~~~GsL~~~l~  716 (716)
                      ..|+|||||++|+|.++|+
T Consensus        75 ~~~lv~Ey~~~g~L~~~l~   93 (303)
T d1vjya_          75 QLWLVSDYHEHGSLFDYLN   93 (303)
T ss_dssp             EEEEEEECCTTCBHHHHHH
T ss_pred             EEEEEEecccCCCHHHHHh
Confidence            5789999999999999873

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.6e-13  Score=135.49  Aligned_cols=88  Identities=25%  Similarity=0.437  Sum_probs=73.0

Q ss_pred             cCCcccccccCCCceEEEEEEcCC----CCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCee
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELPS----GEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHS  699 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~~----~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~  699 (716)
                      ++|...+.||+|+||+||+|....    +..||||+++...   .....+.|.+|++++++++|||||+++|++. .+..
T Consensus         7 ~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~---~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~~   82 (273)
T d1mp8a_           7 ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCT---SDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPV   82 (273)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTT---SHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSSC
T ss_pred             HHeEEEEEEeeCCCcEEEEEEEecCCceeEEEEEEEecccc---CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEe-cCeE
Confidence            468888999999999999997542    3468999986532   2224567999999999999999999999995 5678


Q ss_pred             eEEEcccCCCCHHhHh
Q 041300          700 FLVYEFLERGSLAAIL  715 (716)
Q Consensus       700 ~lv~Ey~~~GsL~~~l  715 (716)
                      |+|||||++|+|.+++
T Consensus        83 ~iv~E~~~~g~l~~~~   98 (273)
T d1mp8a_          83 WIIMELCTLGELRSFL   98 (273)
T ss_dssp             EEEEECCTTEEHHHHH
T ss_pred             EEEEEeccCCcHHhhh
Confidence            9999999999998864

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.36  E-value=2.4e-13  Score=139.51  Aligned_cols=91  Identities=21%  Similarity=0.251  Sum_probs=73.4

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHH---HHHHHHhcCCCCCccccceEEEeCCee
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFL---TEVQALTEIRHRNIVKFYGFCSHAQHS  699 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~---~ei~~l~~l~H~niv~l~g~~~~~~~~  699 (716)
                      ++|...++||+|+||+||+|+. .+|+.||||++.+...... .....+.   +|+++++.++|||||++++++.+++..
T Consensus         4 ddy~i~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~-~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~~~~   82 (364)
T d1omwa3           4 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMK-QGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKL   82 (364)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHH-TCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEE
T ss_pred             HhCeeeeEEecCCCeEEEEEEECCCCCEEEEEEEchHHcchh-hHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEECCEE
Confidence            4688999999999999999974 4689999999864221111 1222333   447788889999999999999999999


Q ss_pred             eEEEcccCCCCHHhHh
Q 041300          700 FLVYEFLERGSLAAIL  715 (716)
Q Consensus       700 ~lv~Ey~~~GsL~~~l  715 (716)
                      |+|||||++|+|.++|
T Consensus        83 ~ivmE~~~gg~L~~~l   98 (364)
T d1omwa3          83 SFILDLMNGGDLHYHL   98 (364)
T ss_dssp             EEEECCCCSCBHHHHH
T ss_pred             EEEEEecCCCcHHHHH
Confidence            9999999999999886

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=4.2e-12  Score=113.10  Aligned_cols=108  Identities=21%  Similarity=0.149  Sum_probs=78.3

Q ss_pred             CCCEEEccCCcCCccCchhhcCcCCCCEEECcCC-cCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEEC
Q 041300          406 ELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNN-QFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNL  484 (716)
Q Consensus       406 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l  484 (716)
                      ..+.++++++.+. ..|..+..+++|+.|++++| .++...+..|.++++|+.|++++|+|+...|.+|..+++|++|+|
T Consensus         9 ~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3           9 GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            3455666666665 34556666777777777655 366666667777778888888888887777777888888888888


Q ss_pred             cCCcCcccCCcCCcCCCCCCEEEccCCcccc
Q 041300          485 SHNNLSGLIPNCFEGMHGLSIIDISDNQLQG  515 (716)
Q Consensus       485 s~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~  515 (716)
                      ++|+|+.+.++.|..+ +|+.|+|++|++.+
T Consensus        88 s~N~l~~l~~~~~~~~-~l~~L~L~~Np~~C  117 (156)
T d2ifga3          88 SFNALESLSWKTVQGL-SLQELVLSGNPLHC  117 (156)
T ss_dssp             CSSCCSCCCSTTTCSC-CCCEEECCSSCCCC
T ss_pred             cCCCCcccChhhhccc-cccccccCCCcccC
Confidence            8888887666666654 58888888888864

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.32  E-value=5.5e-13  Score=136.03  Aligned_cols=91  Identities=21%  Similarity=0.295  Sum_probs=77.3

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ++|...+.||+|+||+||+|+. .+|+.||||++.+...... ...+.+.+|+++|++++|||||++++++.+.+..++|
T Consensus        41 d~y~i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~~-~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~v  119 (350)
T d1rdqe_          41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKL-KQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMV  119 (350)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHT-TCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             cCeEEEEEeecCcCcEEEEEEECCCCCEEEEEEEchHHccCH-HHHHHHHHHHHHHHHcCCCcEeecccccccccccccc
Confidence            3688889999999999999965 4699999999864321111 1346789999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      |||+.+|+|.+++
T Consensus       120 ~e~~~~g~l~~~l  132 (350)
T d1rdqe_         120 MEYVAGGEMFSHL  132 (350)
T ss_dssp             EECCTTCBHHHHH
T ss_pred             cccccccchhhhH
Confidence            9999999998876

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=5.3e-13  Score=133.51  Aligned_cols=90  Identities=26%  Similarity=0.457  Sum_probs=70.4

Q ss_pred             hcCCcccccccCCCceEEEEEEcC--------CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEE
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAELP--------SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFC  693 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~~--------~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~  693 (716)
                      .++|...+.||+|+||.||+|+..        ++..||||++.....   .....+|.+|+..+.++ +|||||+++|+|
T Consensus        12 ~~~~~l~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~---~~~~~~~~~e~~~l~~~~~HpnIv~~~~~~   88 (299)
T d1fgka_          12 RDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDAT---EKDLSDLISEMEMMKMIGKHKNIINLLGAC   88 (299)
T ss_dssp             GGGEEEEEECC-----CEEEEEEECC----CCCEEEEEEECCCTTCC---HHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             HHHeEEeeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccC---hHHHHHHHHHHHHHHHhcCCCeEEeccccc
Confidence            356888899999999999999642        234799999976321   12457899999999888 899999999999


Q ss_pred             EeCCeeeEEEcccCCCCHHhHh
Q 041300          694 SHAQHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       694 ~~~~~~~lv~Ey~~~GsL~~~l  715 (716)
                      .+++..++|||||++|+|.++|
T Consensus        89 ~~~~~~~~v~e~~~~g~l~~~i  110 (299)
T d1fgka_          89 TQDGPLYVIVEYASKGNLREYL  110 (299)
T ss_dssp             CSSSSCEEEECCCTTCBHHHHH
T ss_pred             ccCCeEEEEEEccCCCcHHHHH
Confidence            9999999999999999999987

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=8.6e-13  Score=131.97  Aligned_cols=86  Identities=33%  Similarity=0.503  Sum_probs=70.9

Q ss_pred             cCCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      ++|...+.||+|+||+||+|. ..+|+.||||+++.....+  ...+.+.+|++++++++|||||++++++.+++..|+|
T Consensus         2 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~--~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~~~~~~iv   79 (298)
T d1gz8a_           2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETE--GVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLV   79 (298)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEC---------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             CCCEeccEEecCcCeEEEEEEECCCCCEEEEEEEehhhcCh--HHHHHHHHHHHHHHhCCCCcEEEeccccccccceeEE
Confidence            468888999999999999996 4578999999996532211  1346799999999999999999999999999999999


Q ss_pred             EcccCCCCH
Q 041300          703 YEFLERGSL  711 (716)
Q Consensus       703 ~Ey~~~GsL  711 (716)
                      ||||.+|.+
T Consensus        80 ~e~~~~~~~   88 (298)
T d1gz8a_          80 FEFLHQDLK   88 (298)
T ss_dssp             EECCSEEHH
T ss_pred             EeecCCchh
Confidence            999987544

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=99.30  E-value=8.7e-13  Score=131.25  Aligned_cols=90  Identities=28%  Similarity=0.409  Sum_probs=77.0

Q ss_pred             cCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY  703 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~  703 (716)
                      ++|...++||+|+||+||+|+.++|+.||||+++..... + ...+.|.+|+.+|++++|||||++++++..++..++|+
T Consensus         2 ~~Y~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~-~-~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~i~~   79 (286)
T d1ob3a_           2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKED-E-GIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVF   79 (286)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGG-G-CCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEE
T ss_pred             CCceeccEEecCCCcEEEEEEeCCCCEEEEEEEehhhcC-h-HHHHHHHHHHHHHHhCCCCcEEeeeeecccCCceeEEE
Confidence            367888999999999999998888999999999764321 1 13467999999999999999999999999999999999


Q ss_pred             cccCCCCHHhHh
Q 041300          704 EFLERGSLAAIL  715 (716)
Q Consensus       704 Ey~~~GsL~~~l  715 (716)
                      ||+.+|.+..+.
T Consensus        80 e~~~~~~~~~~~   91 (286)
T d1ob3a_          80 EHLDQDLKKLLD   91 (286)
T ss_dssp             ECCSEEHHHHHH
T ss_pred             EeehhhhHHHHH
Confidence            999988776553

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.8e-12  Score=130.80  Aligned_cols=88  Identities=23%  Similarity=0.469  Sum_probs=70.0

Q ss_pred             cCCcccccccCCCceEEEEEEcC-CCC----EEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCe
Q 041300          624 NDFDAEYCIGNGGHGSVYRAELP-SGE----VVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQH  698 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~----~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~  698 (716)
                      .+|...++||+|+||+||+|... +|+    .||||++......   ...++|.+|++++++++|||||+++|+|.++ .
T Consensus         9 ~dy~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~~---~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~-~   84 (317)
T d1xkka_           9 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSP---KANKEILDEAYVMASVDNPHVCRLLGICLTS-T   84 (317)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEECC----CCEEEEEEEECC-------CTHHHHHHHHHHHHHCCCTTBCCEEEEEESS-S
T ss_pred             HHCEEeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccccCH---HHHHHHHHHHHHHHhCCCCCEeeEEEEEecC-C
Confidence            35888999999999999999753 343    6899988653211   1457899999999999999999999999764 5


Q ss_pred             eeEEEcccCCCCHHhHh
Q 041300          699 SFLVYEFLERGSLAAIL  715 (716)
Q Consensus       699 ~~lv~Ey~~~GsL~~~l  715 (716)
                      .++|+||+.+|+|.+++
T Consensus        85 ~~~v~e~~~~~~l~~~~  101 (317)
T d1xkka_          85 VQLITQLMPFGCLLDYV  101 (317)
T ss_dssp             EEEEEECCTTCBHHHHH
T ss_pred             eeEEEEeccCCcccccc
Confidence            68889999999998865

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.2e-12  Score=132.85  Aligned_cols=83  Identities=20%  Similarity=0.282  Sum_probs=68.8

Q ss_pred             cCCccc-ccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEe----C
Q 041300          624 NDFDAE-YCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSH----A  696 (716)
Q Consensus       624 ~~~~~~-~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~----~  696 (716)
                      ++|... ++||+|+||+||+|+ ..+++.||||+++..         ..+.+|++++.++ +|||||++++++.+    .
T Consensus        11 ~~y~i~~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~---------~~~~~E~~~~~~~~~hpnIv~l~~~~~~~~~~~   81 (335)
T d2ozaa1          11 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC---------PKARREVELHWRASQCPHIVRIVDVYENLYAGR   81 (335)
T ss_dssp             GTEEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECS---------HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTE
T ss_pred             cCEEEeeEEeeeccCeEEEEEEECCCCCEEEEEEECCc---------HHHHHHHHHHHHhcCCCCCCeEEEEEeecccCC
Confidence            467654 579999999999996 457899999998641         3577899987655 89999999999865    3


Q ss_pred             CeeeEEEcccCCCCHHhHh
Q 041300          697 QHSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       697 ~~~~lv~Ey~~~GsL~~~l  715 (716)
                      ...|+|||||++|+|.++|
T Consensus        82 ~~~~ivmEy~~gg~L~~~i  100 (335)
T d2ozaa1          82 KCLLIVMECLDGGELFSRI  100 (335)
T ss_dssp             EEEEEEEECCCSEEHHHHH
T ss_pred             CEEEEEEECCCCCcHHHHH
Confidence            5689999999999999987

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.29  E-value=1.2e-14  Score=135.69  Aligned_cols=115  Identities=20%  Similarity=0.276  Sum_probs=95.5

Q ss_pred             CCCCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcccccCccCCCccccCCCC
Q 041300           70 FSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSS  149 (716)
Q Consensus        70 ~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  149 (716)
                      .++..+++|++|+|++|+|..+ + .|.++++|++|+|++|.|+ .+|..+..+++|++|++++|.++..  +.+..+++
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~~  116 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEKLVN  116 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH--HHHHHHHH
T ss_pred             hHHhcccccceeECcccCCCCc-c-cccCCccccChhhcccccc-ccccccccccccccccccccccccc--cccccccc
Confidence            3577889999999999999854 3 5889999999999999998 5666666677899999999999853  45888999


Q ss_pred             CceeecccccccCCCC-ccccCCcCCcEEEeeccccccccc
Q 041300          150 IEELFLYSNHLNGSLP-PFLGNLSNIVRLYINNNSLSGSIL  189 (716)
Q Consensus       150 L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~  189 (716)
                      |+.|++++|.++.... ..|..+++|+.|++++|+++...+
T Consensus       117 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~  157 (198)
T d1m9la_         117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK  157 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHC
T ss_pred             ccccccccchhccccccccccCCCccceeecCCCccccCcc
Confidence            9999999999985533 568899999999999999875443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=6.2e-12  Score=111.97  Aligned_cols=68  Identities=22%  Similarity=0.239  Sum_probs=28.4

Q ss_pred             cccCCCCCCcEEEccCC-cccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCc
Q 041300          375 KELGKLNSLTKLILRGN-QLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFV  442 (716)
Q Consensus       375 ~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  442 (716)
                      ..+..+++|+.|++++| .++...+..|.++++|+.|+|++|+|+.+.+.+|.++++|++|+|++|+++
T Consensus        25 ~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~   93 (156)
T d2ifga3          25 HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE   93 (156)
T ss_dssp             TTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS
T ss_pred             ccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCc
Confidence            33333444444444333 233333333444444444444444444433444444444444444444444

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=7.7e-13  Score=132.50  Aligned_cols=87  Identities=25%  Similarity=0.395  Sum_probs=67.7

Q ss_pred             cccccCCCceEEEEEEc-CCCCEEEEEEccccCCccch-hhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEccc
Q 041300          629 EYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQI-ADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFL  706 (716)
Q Consensus       629 ~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~-~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  706 (716)
                      .++||+|+||+||+|+. .+|+.||||+++........ ...+.+.+|++++++++|||||++++++.+++..|+|||||
T Consensus         3 l~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~~~~~~~~ivmE~~   82 (299)
T d1ua2a_           3 LDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDFM   82 (299)
T ss_dssp             EEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCEEEEECC
T ss_pred             ceEeccCcCeEEEEEEECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEEeeeccCCceeehhhhh
Confidence            35799999999999975 46899999999754322111 01246889999999999999999999999999999999999


Q ss_pred             CCCCHHhHh
Q 041300          707 ERGSLAAIL  715 (716)
Q Consensus       707 ~~GsL~~~l  715 (716)
                      ++|++..+.
T Consensus        83 ~~~~~~~~~   91 (299)
T d1ua2a_          83 ETDLEVIIK   91 (299)
T ss_dssp             SEEHHHHHT
T ss_pred             cchHHhhhh
Confidence            998876553

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.28  E-value=6.1e-14  Score=130.85  Aligned_cols=126  Identities=24%  Similarity=0.234  Sum_probs=59.8

Q ss_pred             cCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCC
Q 041300          377 LGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLS  456 (716)
Q Consensus       377 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  456 (716)
                      +..+++|++|+|++|+|+. ++ .+..+++|+.|+|++|.|+. +|..+..+++|+.|++++|+++..  ..+..+++|+
T Consensus        44 l~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~~L~  118 (198)
T d1m9la_          44 LSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIASL--SGIEKLVNLR  118 (198)
T ss_dssp             HHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEECS-CSSHHHHHHHCCEEECSEEECCCH--HHHHHHHHSS
T ss_pred             HhcccccceeECcccCCCC-cc-cccCCccccChhhccccccc-cccccccccccccccccccccccc--cccccccccc
Confidence            3344444444444444442 21 24444445555555554442 233333334455555555555421  2344455555


Q ss_pred             EEECCCCcCccccc-hhccCCCCCCEEECcCCcCcccCCcC----------CcCCCCCCEEE
Q 041300          457 ELDASHNLFGGEIP-FQICSLKSLEKLNLSHNNLSGLIPNC----------FEGMHGLSIID  507 (716)
Q Consensus       457 ~L~ls~N~l~~~~p-~~~~~l~~L~~L~ls~N~l~~~~~~~----------~~~~~~L~~l~  507 (716)
                      .|++++|+++.... ..+..+++|+.|++++|++....+..          +..+++|+.||
T Consensus       119 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             EEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            55555555543221 24555566666666666554433321          33456666665

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=8.9e-13  Score=132.99  Aligned_cols=92  Identities=21%  Similarity=0.326  Sum_probs=76.2

Q ss_pred             cCCcccccccCCCceEEEEEEc----CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCC-CCccccceEEEeCCe
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL----PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRH-RNIVKFYGFCSHAQH  698 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~----~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H-~niv~l~g~~~~~~~  698 (716)
                      ++|...++||+|+||+||+|+.    .+|+.||||++++..........+.+.+|++++++++| ||||++++++.+...
T Consensus        24 ~~y~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~~~~~~  103 (322)
T d1vzoa_          24 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETK  103 (322)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTE
T ss_pred             hceEEEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeeeccCCc
Confidence            4699999999999999999963    24789999999753322211133568899999999976 899999999999999


Q ss_pred             eeEEEcccCCCCHHhHh
Q 041300          699 SFLVYEFLERGSLAAIL  715 (716)
Q Consensus       699 ~~lv~Ey~~~GsL~~~l  715 (716)
                      .++|||||.+|+|.+++
T Consensus       104 ~~~v~e~~~~~~L~~~i  120 (322)
T d1vzoa_         104 LHLILDYINGGELFTHL  120 (322)
T ss_dssp             EEEEECCCCSCBHHHHH
T ss_pred             eeeeeecccccHHHHHH
Confidence            99999999999999876

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=6.8e-12  Score=125.19  Aligned_cols=90  Identities=24%  Similarity=0.366  Sum_probs=77.1

Q ss_pred             cCCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV  702 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv  702 (716)
                      +.|...+.||+|+||+||+|+ ..+++.||||+++..... . .....+.+|+.++++++|||||++++++.+.+..++|
T Consensus         2 ~ry~~i~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~-~-~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~~~~iv   79 (292)
T d1unla_           2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDD-E-GVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLV   79 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSS-T-THHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             CCCEeeeEEecCcCeEEEEEEECCCCcEEEEEEEehhhCC-h-HHHHHHHHHHHHHHhcCcCCEEeeccccccccceeEE
Confidence            358888999999999999996 457899999999754322 2 2457899999999999999999999999999999999


Q ss_pred             EcccCCCCHHhHh
Q 041300          703 YEFLERGSLAAIL  715 (716)
Q Consensus       703 ~Ey~~~GsL~~~l  715 (716)
                      +||+.++++..++
T Consensus        80 ~~~~~~~~l~~~~   92 (292)
T d1unla_          80 FEFCDQDLKKYFD   92 (292)
T ss_dssp             EECCSEEHHHHHH
T ss_pred             eeecccccccccc
Confidence            9999999887754

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=5e-12  Score=126.44  Aligned_cols=91  Identities=24%  Similarity=0.451  Sum_probs=71.4

Q ss_pred             hhcCCcccccccCCCceEEEEEEcC------CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEE
Q 041300          622 ETNDFDAEYCIGNGGHGSVYRAELP------SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCS  694 (716)
Q Consensus       622 ~~~~~~~~~~ig~g~~g~v~~~~~~------~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~  694 (716)
                      ..++|...+.||+|+||+||+|...      +++.||||+++....   ....++|.+|++.+.++ +|+|||.+++++.
T Consensus        11 ~~~~y~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~---~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~   87 (299)
T d1ywna1          11 PRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGAT---HSEHRALMSELKILIHIGHHLNVVNLLGACT   87 (299)
T ss_dssp             CGGGEEEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----C---HHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred             cHHHEEEeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccC---cHHHHHHHHHHHHHHhhcCCCeEEEeeeeec
Confidence            3457889999999999999999742      346899999975321   12456788898888777 7999999999987


Q ss_pred             eCC-eeeEEEcccCCCCHHhHh
Q 041300          695 HAQ-HSFLVYEFLERGSLAAIL  715 (716)
Q Consensus       695 ~~~-~~~lv~Ey~~~GsL~~~l  715 (716)
                      ..+ ..++|||||++|+|.++|
T Consensus        88 ~~~~~~~iv~E~~~~g~L~~~l  109 (299)
T d1ywna1          88 KPGGPLMVIVEFCKFGNLSTYL  109 (299)
T ss_dssp             STTSCCEEEEECCTTCBHHHHH
T ss_pred             cCCCeEEEEEEecCCCcHHHHH
Confidence            654 579999999999999987

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=99.19  E-value=9.2e-12  Score=126.33  Aligned_cols=85  Identities=21%  Similarity=0.373  Sum_probs=72.6

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCC-CCCccccceEEEeC--Cee
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR-HRNIVKFYGFCSHA--QHS  699 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~-H~niv~l~g~~~~~--~~~  699 (716)
                      ++|...++||+|+||+||+|+. .+++.||||+++..       ..+++.+|+++|.+++ |||||++++++...  ...
T Consensus        35 d~y~i~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~-------~~~~~~~Ei~il~~l~~hpnIv~~~~~~~~~~~~~~  107 (328)
T d3bqca1          35 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV-------KKKKIKREIKILENLRGGPNIITLADIVKDPVSRTP  107 (328)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSS-------CHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCSE
T ss_pred             cCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEECHH-------HHHHHHHHHHHHHhccCCCCCcEEEEEEEecCCCce
Confidence            4688999999999999999964 57899999998752       2367899999999995 99999999999754  458


Q ss_pred             eEEEcccCCCCHHhHh
Q 041300          700 FLVYEFLERGSLAAIL  715 (716)
Q Consensus       700 ~lv~Ey~~~GsL~~~l  715 (716)
                      ++|||||++|+|.++.
T Consensus       108 ~~v~e~~~~~~L~~~~  123 (328)
T d3bqca1         108 ALVFEHVNNTDFKQLY  123 (328)
T ss_dssp             EEEEECCCSCBGGGTT
T ss_pred             eEEEeecCCCcHHHHh
Confidence            9999999999998754

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=3.5e-12  Score=125.60  Aligned_cols=92  Identities=20%  Similarity=0.298  Sum_probs=73.8

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccch--hhHHHHHHHHHHHhcCC--CCCccccceEEEeCCe
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQI--ADQKEFLTEVQALTEIR--HRNIVKFYGFCSHAQH  698 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~--~~~~~~~~ei~~l~~l~--H~niv~l~g~~~~~~~  698 (716)
                      ++|...++||+|+||+||+|+. .+|+.||||++.+.......  ....++.+|++++++++  |||||++++++.+++.
T Consensus         4 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~~~~   83 (273)
T d1xwsa_           4 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDS   83 (273)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSSE
T ss_pred             CeEEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEeeCCe
Confidence            4688899999999999999964 57899999999754322211  11234778999999986  9999999999999999


Q ss_pred             eeEEEcccCC-CCHHhHh
Q 041300          699 SFLVYEFLER-GSLAAIL  715 (716)
Q Consensus       699 ~~lv~Ey~~~-GsL~~~l  715 (716)
                      .++||||+.+ +++.+++
T Consensus        84 ~~lv~e~~~~~~~l~~~~  101 (273)
T d1xwsa_          84 FVLILERPEPVQDLFDFI  101 (273)
T ss_dssp             EEEEEECCSSEEEHHHHH
T ss_pred             EEEEEEeccCcchHHHHH
Confidence            9999999986 6776654

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=1.3e-11  Score=126.44  Aligned_cols=88  Identities=23%  Similarity=0.340  Sum_probs=70.0

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC------
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA------  696 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~------  696 (716)
                      ..|...++||+|+||+||+|.. .+|+.||||++..... .. .....+.+|+.++++++|||||++++++...      
T Consensus        17 ~~Y~i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~-~~-~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~~~~~~   94 (355)
T d2b1pa1          17 KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQ-NQ-THAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEF   94 (355)
T ss_dssp             TTEEEEEECSCC--CEEEEEEETTTTEEEEEEEEESTTS-SH-HHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTC
T ss_pred             CCeEEEEEeecCcCeEEEEEEECCCCCEEEEEEEChhhc-CH-HHHHHHHHHHHHHHhcCCCCeeEEEEEEecccccccC
Confidence            4688899999999999999964 4699999999976432 22 2446789999999999999999999999643      


Q ss_pred             CeeeEEEcccCCCCHHh
Q 041300          697 QHSFLVYEFLERGSLAA  713 (716)
Q Consensus       697 ~~~~lv~Ey~~~GsL~~  713 (716)
                      ...|+|||||.+|.+..
T Consensus        95 ~~~~iv~Ey~~~~l~~~  111 (355)
T d2b1pa1          95 QDVYLVMELMDANLCQV  111 (355)
T ss_dssp             CEEEEEEECCSEEHHHH
T ss_pred             ceeEEEEeccchHHHHh
Confidence            57799999998765543

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1.4e-11  Score=125.83  Aligned_cols=88  Identities=23%  Similarity=0.361  Sum_probs=65.8

Q ss_pred             cCCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC-----
Q 041300          624 NDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ-----  697 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~-----  697 (716)
                      ..|...+.||+|+||+||+|. ..+|+.||||++..... .. ...+.+.+|+++|++++|||||+++++|...+     
T Consensus        18 ~~Y~~i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~-~~-~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~~~~~~   95 (346)
T d1cm8a_          18 AVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQ-SE-LFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDF   95 (346)
T ss_dssp             SSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTS-SH-HHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTC
T ss_pred             CcEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEchhhc-Ch-HHHHHHHHHHHHHHhcCCCCeeEEEEEeccCcccccc
Confidence            468888999999999999996 45699999999975322 22 24567899999999999999999999997654     


Q ss_pred             -eeeEEEcccCCCCHHhH
Q 041300          698 -HSFLVYEFLERGSLAAI  714 (716)
Q Consensus       698 -~~~lv~Ey~~~GsL~~~  714 (716)
                       ..|+||||| +++|.++
T Consensus        96 ~~~~lv~e~~-~~~l~~~  112 (346)
T d1cm8a_          96 TDFYLVMPFM-GTDLGKL  112 (346)
T ss_dssp             CCCEEEEECC-SEEHHHH
T ss_pred             ceEEEEEecc-cccHHHH
Confidence             469999999 4566654

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1.5e-11  Score=125.87  Aligned_cols=92  Identities=24%  Similarity=0.343  Sum_probs=74.7

Q ss_pred             hcCCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC-----
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA-----  696 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~-----  696 (716)
                      .+.|...+.||+|+||+||+|+ ..+|+.||||++.....  .....+.+.+|++++++++|||+|++++++...     
T Consensus        17 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~--~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~~~~~   94 (348)
T d2gfsa1          17 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQ--SIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEE   94 (348)
T ss_dssp             ETTEEEEEECGGGTTSSEEEEEETTTTEEEEEEECSCTTS--SHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSTTT
T ss_pred             CCCeEEEEEEecCCCeEEEEEEECCCCCEEEEEEECchhc--ChHHHHHHHHHHHHHHhcCCCCeeeEEEEEeecccccc
Confidence            3468888999999999999996 45799999999976422  222456789999999999999999999998643     


Q ss_pred             CeeeEEEcccCCCCHHhHhC
Q 041300          697 QHSFLVYEFLERGSLAAILS  716 (716)
Q Consensus       697 ~~~~lv~Ey~~~GsL~~~l~  716 (716)
                      ...++|+||+.+|+|.++++
T Consensus        95 ~~~~~i~~~~~gg~L~~~~~  114 (348)
T d2gfsa1          95 FNDVYLVTHLMGADLNNIVK  114 (348)
T ss_dssp             CCCCEEEEECCSEEHHHHHT
T ss_pred             CceEEEEEeecCCchhhhcc
Confidence            23477788899999998863

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=2.3e-11  Score=124.12  Aligned_cols=89  Identities=22%  Similarity=0.249  Sum_probs=69.3

Q ss_pred             cCCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC----e
Q 041300          624 NDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ----H  698 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~----~  698 (716)
                      ..|...+.||+|+||+||+|. ..+|+.||||++.+..   .....+.+.+|+++|++++|||+|++++++....    .
T Consensus         8 ~rY~~~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~---~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~~~~   84 (345)
T d1pmea_           8 PRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFE---HQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMK   84 (345)
T ss_dssp             TTEEEEEECC---CCCEEEEEETTTCSEEEEEEECCTT---CHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCC
T ss_pred             CCeEEEEEEeeccCeEEEEEEECCCCcEEEEEEEehhc---ChHHHHHHHHHHHHHHHcCCCCCCcEEEEEeeccccccc
Confidence            458888999999999999995 4579999999997532   2224567999999999999999999999997653    2


Q ss_pred             eeEEEcccCCCCHHhHh
Q 041300          699 SFLVYEFLERGSLAAIL  715 (716)
Q Consensus       699 ~~lv~Ey~~~GsL~~~l  715 (716)
                      .++++||+.+|+|.+++
T Consensus        85 ~~~l~~~~~~g~L~~~l  101 (345)
T d1pmea_          85 DVYLVTHLMGADLYKLL  101 (345)
T ss_dssp             CEEEEEECCCEEHHHHH
T ss_pred             eEEEEEeecCCchhhhh
Confidence            34556678899999886

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=7.2e-12  Score=128.19  Aligned_cols=80  Identities=31%  Similarity=0.431  Sum_probs=65.0

Q ss_pred             CCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC------
Q 041300          625 DFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ------  697 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~------  697 (716)
                      .|...++||+|+||+||+|+. .+|+.||||++.....        .+.+|+++|++++|||||++++++....      
T Consensus        21 ~Y~~~k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~--------~~~~Ei~il~~l~h~niv~~~~~~~~~~~~~~~~   92 (350)
T d1q5ka_          21 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR--------FKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEV   92 (350)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSS--------SCCHHHHHHHHCCCTTBCCEEEEEEEC--CCSCC
T ss_pred             CcEeeeEEeeCcCeEEEEEEECCCCCEEEEEEECccch--------HHHHHHHHHHhcCCCCCCcEEEEEEecCccCCce
Confidence            577888999999999999975 4689999999975321        2347999999999999999999986532      


Q ss_pred             eeeEEEcccCCCCHH
Q 041300          698 HSFLVYEFLERGSLA  712 (716)
Q Consensus       698 ~~~lv~Ey~~~GsL~  712 (716)
                      ..++|||||++|.+.
T Consensus        93 ~~~lv~Ey~~~~~~~  107 (350)
T d1q5ka_          93 YLNLVLDYVPETVYR  107 (350)
T ss_dssp             EEEEEEECCSEEHHH
T ss_pred             EEEEEEeccCCccHH
Confidence            368999999987433

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=3e-11  Score=121.95  Aligned_cols=90  Identities=24%  Similarity=0.427  Sum_probs=70.5

Q ss_pred             hcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC-----
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA-----  696 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~-----  696 (716)
                      .++|...+.||+|+||+||+|+. .+|+.||||++......+.  ....+.+|+++|++++|||++++++++...     
T Consensus         9 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~--~~~~~~~E~~il~~l~h~nii~~~~~~~~~~~~~~   86 (318)
T d3blha1           9 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEG--FPITALREIKILQLLKHENVVNLIEICRTKASPYN   86 (318)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC----CTTS--SCHHHHHHHHHHHHCCCTTBCCEEEEEEC------
T ss_pred             cCCEEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchH--HHHHHHHHHHHHHHhcCCCccceEeeeeccccccc
Confidence            36788999999999999999974 5799999999865432221  346789999999999999999999998653     


Q ss_pred             ---CeeeEEEcccCCCCHHhH
Q 041300          697 ---QHSFLVYEFLERGSLAAI  714 (716)
Q Consensus       697 ---~~~~lv~Ey~~~GsL~~~  714 (716)
                         +..++|||||++|.+..+
T Consensus        87 ~~~~~~~iv~e~~~~~~~~~~  107 (318)
T d3blha1          87 RCKGSIYLVFDFCEHDLAGLL  107 (318)
T ss_dssp             ----CEEEEEECCCEEHHHHH
T ss_pred             ccCceEEEEEeccCCCccchh
Confidence               357899999998876543

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=1e-10  Score=117.07  Aligned_cols=89  Identities=22%  Similarity=0.427  Sum_probs=66.9

Q ss_pred             hcCCcccccccCCCceEEEEEEc-CC-CCEEEEEEccccCCccchhhHHHHHHHHHHHhcC---CCCCccccceEEEeC-
Q 041300          623 TNDFDAEYCIGNGGHGSVYRAEL-PS-GEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI---RHRNIVKFYGFCSHA-  696 (716)
Q Consensus       623 ~~~~~~~~~ig~g~~g~v~~~~~-~~-~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l---~H~niv~l~g~~~~~-  696 (716)
                      .++|...+.||+|+||+||+|+. .+ ++.||||+++.....+.  ....+.+|+.+++.+   +|||||++++++... 
T Consensus         6 ~~~Y~i~~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~~--~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~   83 (305)
T d1blxa_           6 DQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEG--MPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSR   83 (305)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTS--CBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEE
T ss_pred             cCCEEEEEEEecccCeEEEEEEEECCCCEEEEEEEEehhhccch--HHHHHHHHHHHHHHHhhcCCCCcceeeeeecccc
Confidence            45788999999999999999964 34 66799999965322211  123466777776655   899999999998642 


Q ss_pred             ----CeeeEEEcccCCCCHHh
Q 041300          697 ----QHSFLVYEFLERGSLAA  713 (716)
Q Consensus       697 ----~~~~lv~Ey~~~GsL~~  713 (716)
                          ...+++||||++|.+..
T Consensus        84 ~~~~~~~~~~~e~~~~~~~~~  104 (305)
T d1blxa_          84 TDRETKLTLVFEHVDQDLTTY  104 (305)
T ss_dssp             CSSEEEEEEEEECCSCBHHHH
T ss_pred             cccCceEEEEEEeccCCchhh
Confidence                35799999999987653

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.97  E-value=4.1e-10  Score=111.70  Aligned_cols=85  Identities=22%  Similarity=0.323  Sum_probs=70.8

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCC-CCccccceEEEeCCeeeE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRH-RNIVKFYGFCSHAQHSFL  701 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H-~niv~l~g~~~~~~~~~l  701 (716)
                      ++|...++||+|+||+||+|+. .+|+.||||++....      ...++.+|++.++.++| +|++.+++++..+...++
T Consensus         5 ~~Y~i~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~------~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~~   78 (293)
T d1csna_           5 VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS------DAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVL   78 (293)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT------TSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEE
T ss_pred             CceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEcccc------CcHHHHHHHHHHHHhcCCCCCCEEEEEeecCCccEE
Confidence            4688899999999999999974 468899999986532      12347788888988865 899999999999999999


Q ss_pred             EEcccCCCCHHhHh
Q 041300          702 VYEFLERGSLAAIL  715 (716)
Q Consensus       702 v~Ey~~~GsL~~~l  715 (716)
                      ||||| +|+|.+++
T Consensus        79 vme~~-~~~l~~~~   91 (293)
T d1csna_          79 VIDLL-GPSLEDLL   91 (293)
T ss_dssp             EEECC-CCBHHHHH
T ss_pred             EEEec-CCCHHHHH
Confidence            99999 68998775

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.87  E-value=1.7e-09  Score=107.65  Aligned_cols=84  Identities=21%  Similarity=0.326  Sum_probs=65.5

Q ss_pred             cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEE-EeCCeeeE
Q 041300          624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFC-SHAQHSFL  701 (716)
Q Consensus       624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~-~~~~~~~l  701 (716)
                      +.|...+.||+|+||+||+|+. .+|+.||||++....      ...++.+|+++++.++|+++|..+++| .+++..++
T Consensus         7 ~rY~l~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~------~~~~~~~E~~i~~~l~~~~~i~~~~~~~~~~~~~~i   80 (299)
T d1ckia_           7 NRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT------KHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVM   80 (299)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEESCT------TSCCHHHHHHHHHHSTTSTTCCCEEEEEEETTEEEE
T ss_pred             CEEEEeEEEeeCCCcEEEEEEECCCCCEEEEEEEchhc------cCHHHHHHHHHHHHccCCCcccEEEEEEecCCEEEE
Confidence            3588899999999999999964 568899999986532      123478999999999888776666555 66778899


Q ss_pred             EEcccCCCCHHhH
Q 041300          702 VYEFLERGSLAAI  714 (716)
Q Consensus       702 v~Ey~~~GsL~~~  714 (716)
                      |||||.+ ++.+.
T Consensus        81 vme~~~~-~l~~~   92 (299)
T d1ckia_          81 VMELLGP-SLEDL   92 (299)
T ss_dssp             EEECCCC-BHHHH
T ss_pred             EEEEcCC-chhhh
Confidence            9999954 55544

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=1.1e-08  Score=91.22  Aligned_cols=82  Identities=28%  Similarity=0.210  Sum_probs=40.0

Q ss_pred             cCcCCCCEEECcCCcCcccC--ChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCc-------C
Q 041300          426 GNLLKLHYLGLSNNQFVLEL--PKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPN-------C  496 (716)
Q Consensus       426 ~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~-------~  496 (716)
                      ..+++|++|+|++|+|+...  +..+..+++|+.||+++|.++...+..+.....|+.|++++|.++.....       .
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i  141 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI  141 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence            34455555555555554321  23344555555555555555543333333344556666666665543321       1


Q ss_pred             CcCCCCCCEEE
Q 041300          497 FEGMHGLSIID  507 (716)
Q Consensus       497 ~~~~~~L~~l~  507 (716)
                      +..+++|+.||
T Consensus       142 ~~~~P~L~~LD  152 (162)
T d1koha1         142 RERFPKLLRLD  152 (162)
T ss_dssp             HTTSTTCCEET
T ss_pred             HHHCCCCCEEC
Confidence            34456666554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=1.3e-08  Score=90.76  Aligned_cols=82  Identities=22%  Similarity=0.170  Sum_probs=42.3

Q ss_pred             CCCCCCCEEEccCCcCCccC--chhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccc-------hh
Q 041300          402 GSLIELEYLDFSANKFNNSV--PESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIP-------FQ  472 (716)
Q Consensus       402 ~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p-------~~  472 (716)
                      ..+++|++|+|++|+|+...  +..+..+++|+.|+|++|.|+...+..+.+...|+.|++++|.+.....       ..
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i  141 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI  141 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence            34555555555555555432  2334455666666666666654333233333456666666666654322       22


Q ss_pred             ccCCCCCCEEE
Q 041300          473 ICSLKSLEKLN  483 (716)
Q Consensus       473 ~~~l~~L~~L~  483 (716)
                      +..+|+|+.||
T Consensus       142 ~~~~P~L~~LD  152 (162)
T d1koha1         142 RERFPKLLRLD  152 (162)
T ss_dssp             HTTSTTCCEET
T ss_pred             HHHCCCCCEEC
Confidence            44566776664

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.42  E-value=1.1e-07  Score=87.24  Aligned_cols=83  Identities=14%  Similarity=0.199  Sum_probs=59.9

Q ss_pred             cccccccCCCceEEEEEEcCCCCEEEEEEccccCCc-----c---------chhhHHHHHHHHHHHhcCCCCCccccceE
Q 041300          627 DAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPC-----D---------QIADQKEFLTEVQALTEIRHRNIVKFYGF  692 (716)
Q Consensus       627 ~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~-----~---------~~~~~~~~~~ei~~l~~l~H~niv~l~g~  692 (716)
                      ...+.||+|+||+||+|...+|+.||||+++.....     .         .........+|...+.++.|++++..+++
T Consensus         3 ~vg~~IG~G~~g~Vy~a~~~~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~v~~~~~~   82 (191)
T d1zara2           3 AIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVYAW   82 (191)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCCEEEE
T ss_pred             hhCCEeeeCcceEEEEEECCCCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCCcceEEEe
Confidence            356789999999999998778999999987542111     0         00112345678899999999999987654


Q ss_pred             EEeCCeeeEEEcccCCCCHHh
Q 041300          693 CSHAQHSFLVYEFLERGSLAA  713 (716)
Q Consensus       693 ~~~~~~~~lv~Ey~~~GsL~~  713 (716)
                      .    ..++||||++++.+.+
T Consensus        83 ~----~~~lvme~~~~~~~~~   99 (191)
T d1zara2          83 E----GNAVLMELIDAKELYR   99 (191)
T ss_dssp             E----TTEEEEECCCCEEGGG
T ss_pred             c----CCEEEEEeeccccccc
Confidence            3    2379999999876543

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.24  E-value=5e-07  Score=91.96  Aligned_cols=81  Identities=19%  Similarity=0.223  Sum_probs=62.4

Q ss_pred             CCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCC-----------CCCccccceE
Q 041300          625 DFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR-----------HRNIVKFYGF  692 (716)
Q Consensus       625 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~-----------H~niv~l~g~  692 (716)
                      .|...++||+|+||+||+|+. .+|+.||||+++..    . ...+.+.+|+.++++++           |+|||+++++
T Consensus        14 rY~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~----~-~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~   88 (362)
T d1q8ya_          14 RYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD----K-VYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDH   88 (362)
T ss_dssp             TEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC----H-HHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEE
T ss_pred             cEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEecc----c-cchHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEE
Confidence            488899999999999999964 57899999999752    1 13456788998888775           5789999999


Q ss_pred             EEeC--CeeeEEEcccCCCC
Q 041300          693 CSHA--QHSFLVYEFLERGS  710 (716)
Q Consensus       693 ~~~~--~~~~lv~Ey~~~Gs  710 (716)
                      +...  ...++||+++..+.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~  108 (362)
T d1q8ya_          89 FNHKGPNGVHVVMVFEVLGE  108 (362)
T ss_dssp             EEEEETTEEEEEEEECCCCE
T ss_pred             eeeccccceeeeeeeccccc
Confidence            8653  45667777765544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.66  E-value=2.1e-05  Score=69.54  Aligned_cols=86  Identities=19%  Similarity=0.150  Sum_probs=39.2

Q ss_pred             CcCCCCEEECcCCcCccc----CChhhhCCCCCCEEECCCCcCcccc----chhccCCCCCCEEECcCCcCccc------
Q 041300          427 NLLKLHYLGLSNNQFVLE----LPKELEKLVQLSELDASHNLFGGEI----PFQICSLKSLEKLNLSHNNLSGL------  492 (716)
Q Consensus       427 ~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~ls~N~l~~~~----p~~~~~l~~L~~L~ls~N~l~~~------  492 (716)
                      ..+.|+.|+|++|.+...    +...+...+.|++|++++|.++...    -..+...++|++|++++|++...      
T Consensus        42 ~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~  121 (167)
T d1pgva_          42 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEM  121 (167)
T ss_dssp             TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHH
T ss_pred             hCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHH
Confidence            334444555554444321    1122333345555555555554321    12334445566666666554322      


Q ss_pred             -CCcCCcCCCCCCEEEccCCc
Q 041300          493 -IPNCFEGMHGLSIIDISDNQ  512 (716)
Q Consensus       493 -~~~~~~~~~~L~~l~ls~N~  512 (716)
                       +...+...++|+.|+++.+.
T Consensus       122 ~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_         122 DMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHhCCCccEeeCcCCC
Confidence             12233345566666665543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.60  E-value=3.5e-05  Score=68.10  Aligned_cols=64  Identities=13%  Similarity=0.186  Sum_probs=29.2

Q ss_pred             CCCCCCEEEccCC-ccccc----cCcccCCCCCCcEEEccCCcccccCCc----ccCCCCCCCEEEccCCcCC
Q 041300          355 NMSQLQALDLSLN-HIVGE----IPKELGKLNSLTKLILRGNQLTGRLPT----EIGSLIELEYLDFSANKFN  418 (716)
Q Consensus       355 ~l~~L~~L~L~~n-~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~  418 (716)
                      +.++|+.|+|+++ .++..    +...+...++|+.|+|++|.+......    .+...+.|+.|+|++|.++
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~   85 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT   85 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcc
Confidence            3456666666653 34321    112344445555666655555422111    1223344555555555544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.89  E-value=0.00012  Score=64.50  Aligned_cols=112  Identities=15%  Similarity=0.162  Sum_probs=70.1

Q ss_pred             CCCCCCcEEECCC-CCcccc----CcccccCCCCCCEEECcCCcCcccC----CccccCCCCCCEEEcccccCccC----
Q 041300           73 SSFPQLVHLDLSL-NGFFGT----IPSQIGNLTKLSYISLDSNQLSGKI----PAEVGLLTHLKVLSFQFNELDGS----  139 (716)
Q Consensus        73 ~~l~~L~~L~Ls~-n~i~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~L~~N~l~~~----  139 (716)
                      .+.+.|++|+|++ +.+...    +..++...++|++|+|++|.+....    -..+...+.|+.+++++|.+...    
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            3457888888887 445422    3344567788888888888876432    22345677888888888877532    


Q ss_pred             CCccccCCCCCceeec--ccccccC----CCCccccCCcCCcEEEeecccc
Q 041300          140 IPPEVCQLSSIEELFL--YSNHLNG----SLPPFLGNLSNIVRLYINNNSL  184 (716)
Q Consensus       140 ~~~~~~~l~~L~~L~L--~~N~l~~----~~p~~~~~l~~L~~L~L~~n~l  184 (716)
                      +...+...++|+.++|  ++|.+..    .+...+...++|++|+++.+..
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            2244566677775444  5566643    2234455677788887776543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.76  E-value=0.00041  Score=60.86  Aligned_cols=11  Identities=18%  Similarity=0.302  Sum_probs=5.0

Q ss_pred             CCCCCEEEccC
Q 041300          356 MSQLQALDLSL  366 (716)
Q Consensus       356 l~~L~~L~L~~  366 (716)
                      .++|+.|++++
T Consensus        16 ~~~L~~L~L~~   26 (166)
T d1io0a_          16 DPDLEEVNLNN   26 (166)
T ss_dssp             CTTCCEEECTT
T ss_pred             CCCCcEEEcCC
Confidence            34444444443

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=89.51  E-value=0.15  Score=46.89  Aligned_cols=73  Identities=18%  Similarity=0.154  Sum_probs=50.4

Q ss_pred             cCCC-ceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCC--CCCccccceEEEeCCeeeEEEcccCCC
Q 041300          633 GNGG-HGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR--HRNIVKFYGFCSHAQHSFLVYEFLERG  709 (716)
Q Consensus       633 g~g~-~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~--H~niv~l~g~~~~~~~~~lv~Ey~~~G  709 (716)
                      ..|. -+.||+...+++..+.||.-....       ..++.+|...++.+.  +--+.++++++.+++..++||||+++-
T Consensus        19 ~~G~s~~~v~r~~~~~~~~~vlK~~~~~~-------~~~l~~E~~~l~~L~~~gvpvP~v~~~~~~~~~~~~v~~~i~G~   91 (255)
T d1nd4a_          19 TIGCSDAAVFRLSAQGRPVLFVKTDLSGA-------LNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQ   91 (255)
T ss_dssp             SCTTSSCEEEEEECTTSCCEEEEEECSCT-------TSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCSSE
T ss_pred             CCcccCCeEEEEEeCCCCEEEEEeCCccC-------HhHHHHHHHHHHHHHhcCCCCCceeeecccccceEEEEEeeecc
Confidence            3443 367999988778778888765421       123566777666553  333567788888888899999999886


Q ss_pred             CHH
Q 041300          710 SLA  712 (716)
Q Consensus       710 sL~  712 (716)
                      ++.
T Consensus        92 ~~~   94 (255)
T d1nd4a_          92 DLL   94 (255)
T ss_dssp             ETT
T ss_pred             ccc
Confidence            654

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=88.52  E-value=0.61  Score=42.72  Aligned_cols=89  Identities=12%  Similarity=0.022  Sum_probs=57.8

Q ss_pred             HHhhcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCC-CCCccccceEEEeCCe
Q 041300          620 VRETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR-HRNIVKFYGFCSHAQH  698 (716)
Q Consensus       620 ~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~-H~niv~l~g~~~~~~~  698 (716)
                      ......|...+..+.++-+.||+... ++..+.||+.......    ....+.+|...+..+. +--+.+++.++..++.
T Consensus        10 ~~~~~~~~~~~~~~G~s~~~v~rv~~-~~~~~vlk~~~~~~~~----~~~~~~~E~~~l~~l~~~vpvP~vl~~~~~~~~   84 (263)
T d1j7la_          10 KKLIEKYRCVKDTEGMSPAKVYKLVG-ENENLYLKMTDSRYKG----TTYDVEREKDMMLWLEGKLPVPKVLHFERHDGW   84 (263)
T ss_dssp             HHHHTTSEEEECSCCCSSSEEEEEEC-SSCEEEEEEECGGGTT----STTCHHHHHHHHHHHTTTSCCCCEEEEEEETTE
T ss_pred             HHhhhceEEEEcCCCCCCCcEEEEEe-CCCeEEEEEcCCCccc----chhhHHHHHHHHHHHhccCCCCcEEEEEecCCc
Confidence            33334555555444444578999875 4556778877543211    1224677887776653 4445677888888888


Q ss_pred             eeEEEcccCCCCHHh
Q 041300          699 SFLVYEFLERGSLAA  713 (716)
Q Consensus       699 ~~lv~Ey~~~GsL~~  713 (716)
                      .++||||+++..+.+
T Consensus        85 ~~lv~~~l~G~~~~~   99 (263)
T d1j7la_          85 SNLLMSEADGVLCSE   99 (263)
T ss_dssp             EEEEEECCSSEEHHH
T ss_pred             eEEEEEecccccccc
Confidence            999999999987754